Query 013446
Match_columns 443
No_of_seqs 303 out of 1884
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 10:44:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 5.7E-32 1.9E-36 254.5 19.6 164 254-431 13-180 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 2.8E-31 9.5E-36 236.1 20.1 161 257-431 1-166 (166)
3 2qfj_A FBP-interacting repress 100.0 1.1E-31 3.7E-36 249.9 15.1 179 253-436 25-209 (216)
4 1l3k_A Heterogeneous nuclear r 100.0 1.1E-30 3.8E-35 239.5 20.1 176 252-437 9-188 (196)
5 1fxl_A Paraneoplastic encephal 100.0 4.7E-30 1.6E-34 228.3 19.9 158 256-429 2-167 (167)
6 1b7f_A Protein (SXL-lethal pro 100.0 3.1E-30 1.1E-34 230.5 18.3 159 255-429 2-168 (168)
7 2cjk_A Nuclear polyadenylated 100.0 1.7E-30 6E-35 232.2 15.3 161 255-432 2-166 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 8.7E-30 3E-34 228.7 19.6 161 255-430 2-175 (175)
9 3smz_A Protein raver-1, ribonu 100.0 1.7E-29 5.7E-34 246.1 16.7 166 255-433 94-265 (284)
10 1fje_B Nucleolin RBD12, protei 100.0 2.5E-29 8.4E-34 227.1 13.8 163 252-431 9-173 (175)
11 2g4b_A Splicing factor U2AF 65 100.0 1.3E-28 4.6E-33 221.0 18.4 156 255-430 3-172 (172)
12 2ghp_A U4/U6 snRNA-associated 100.0 3.2E-29 1.1E-33 245.1 14.6 235 160-431 49-290 (292)
13 2yh0_A Splicing factor U2AF 65 100.0 5.1E-28 1.7E-32 222.0 20.9 174 255-434 3-196 (198)
14 3tyt_A Heterogeneous nuclear r 100.0 4E-28 1.4E-32 228.5 18.4 170 255-429 3-204 (205)
15 2adc_A Polypyrimidine tract-bi 100.0 1.1E-27 3.9E-32 227.5 21.6 173 253-433 31-229 (229)
16 2ghp_A U4/U6 snRNA-associated 100.0 5.6E-28 1.9E-32 236.2 17.6 160 251-433 36-198 (292)
17 1qm9_A Polypyrimidine tract-bi 100.0 6.2E-28 2.1E-32 222.7 16.9 171 255-433 2-198 (198)
18 3pgw_A U1-A; protein-RNA compl 100.0 2.2E-27 7.6E-32 230.8 21.2 173 252-430 5-281 (282)
19 3smz_A Protein raver-1, ribonu 99.9 1.2E-26 4.1E-31 225.9 20.2 154 253-433 19-176 (284)
20 3sde_A Paraspeckle component 1 99.9 3.5E-26 1.2E-30 221.6 19.3 154 253-432 19-179 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 3.1E-21 1.1E-25 172.6 15.3 145 285-432 2-150 (158)
22 4f25_A Polyadenylate-binding p 99.8 2.3E-20 7.8E-25 159.4 8.9 109 255-370 4-113 (115)
23 2i2y_A Fusion protein consists 99.8 1.9E-19 6.6E-24 160.0 13.2 138 289-432 6-148 (150)
24 4fxv_A ELAV-like protein 1; RN 99.7 6E-18 2E-22 141.0 11.1 79 353-432 18-99 (99)
25 4f25_A Polyadenylate-binding p 99.7 9.5E-17 3.2E-21 136.9 11.1 79 353-432 4-83 (115)
26 2lxi_A RNA-binding protein 10; 99.7 2.5E-17 8.4E-22 135.0 7.1 78 354-432 1-83 (91)
27 2lea_A Serine/arginine-rich sp 99.7 3.3E-17 1.1E-21 144.0 7.9 123 297-436 5-131 (135)
28 1whw_A Hypothetical protein ri 99.7 2.2E-16 7.4E-21 130.1 12.0 88 353-441 7-97 (99)
29 4fxv_A ELAV-like protein 1; RN 99.7 1E-16 3.5E-21 133.5 9.6 78 254-332 17-97 (99)
30 2dgo_A Cytotoxic granule-assoc 99.7 5.7E-16 2E-20 131.2 13.7 85 351-436 12-99 (115)
31 2cq3_A RNA-binding protein 9; 99.7 5.9E-16 2E-20 128.6 13.5 82 351-433 12-94 (103)
32 2cpz_A CUG triplet repeat RNA- 99.7 3.6E-16 1.2E-20 132.6 12.2 80 352-432 23-105 (115)
33 2d9p_A Polyadenylate-binding p 99.7 3E-16 1E-20 130.4 11.4 82 351-433 12-94 (103)
34 2dnh_A Bruno-like 5, RNA bindi 99.7 3.5E-16 1.2E-20 130.3 11.8 82 351-433 12-98 (105)
35 2cq0_A Eukaryotic translation 99.7 4.6E-16 1.6E-20 129.2 12.0 82 351-433 12-96 (103)
36 2hvz_A Splicing factor, argini 99.7 1.9E-16 6.6E-21 131.0 9.5 100 257-364 1-101 (101)
37 3p5t_L Cleavage and polyadenyl 99.7 5.6E-17 1.9E-21 132.0 6.1 81 355-436 2-87 (90)
38 2cqi_A Nucleolysin TIAR; RNA r 99.7 1E-15 3.5E-20 127.1 13.8 83 352-435 13-96 (103)
39 2lkz_A RNA-binding protein 5; 99.7 8.7E-17 3E-21 133.4 7.2 79 353-432 8-95 (95)
40 3md1_A Nuclear and cytoplasmic 99.7 5.2E-16 1.8E-20 123.4 11.5 78 354-432 1-81 (83)
41 2cqd_A RNA-binding region cont 99.7 8.4E-16 2.9E-20 130.5 13.2 88 351-440 14-104 (116)
42 2cpf_A RNA binding motif prote 99.7 5.4E-16 1.8E-20 127.5 11.5 83 353-436 4-92 (98)
43 2dnm_A SRP46 splicing factor; 99.7 2.9E-16 9.8E-21 130.5 9.8 80 352-432 11-93 (103)
44 3s8s_A Histone-lysine N-methyl 99.7 5E-16 1.7E-20 131.9 11.5 78 353-431 5-85 (110)
45 2dnz_A Probable RNA-binding pr 99.7 7E-16 2.4E-20 125.9 11.9 83 353-436 4-89 (95)
46 2dgv_A HnRNP M, heterogeneous 99.7 3.8E-16 1.3E-20 126.8 10.0 82 353-435 7-89 (92)
47 3bs9_A Nucleolysin TIA-1 isofo 99.7 6.5E-16 2.2E-20 123.9 11.1 79 353-432 5-86 (87)
48 1x5t_A Splicing factor 3B subu 99.7 4.5E-16 1.5E-20 127.3 10.3 81 353-434 4-88 (96)
49 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4.7E-16 1.6E-20 128.8 10.4 82 352-434 10-94 (102)
50 2cqc_A Arginine/serine-rich sp 99.6 1.1E-15 3.6E-20 124.7 12.2 80 351-431 12-94 (95)
51 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4.4E-16 1.5E-20 124.4 9.6 77 353-430 6-85 (85)
52 2do4_A Squamous cell carcinoma 99.6 9.4E-16 3.2E-20 126.7 11.7 80 352-432 15-96 (100)
53 2dgx_A KIAA0430 protein; RRM d 99.6 8.5E-16 2.9E-20 126.5 11.2 81 353-435 8-93 (96)
54 2dgs_A DAZ-associated protein 99.6 1E-15 3.6E-20 126.2 11.7 81 352-433 8-90 (99)
55 2do0_A HnRNP M, heterogeneous 99.6 2.5E-15 8.5E-20 126.9 13.9 79 352-431 13-93 (114)
56 3lqv_A PRE-mRNA branch site pr 99.6 4.3E-16 1.5E-20 132.0 9.1 102 254-380 6-108 (115)
57 2cph_A RNA binding motif prote 99.6 1.1E-15 3.9E-20 127.4 11.5 81 351-432 12-97 (107)
58 2e5h_A Zinc finger CCHC-type a 99.6 1.1E-15 3.6E-20 124.6 11.0 78 352-430 14-94 (94)
59 1x5s_A Cold-inducible RNA-bind 99.6 6.1E-16 2.1E-20 128.1 9.7 84 353-437 11-97 (102)
60 1x4h_A RNA-binding protein 28; 99.6 1.3E-15 4.4E-20 127.9 11.8 82 351-433 12-102 (111)
61 2x1f_A MRNA 3'-END-processing 99.6 1E-15 3.5E-20 125.7 10.9 80 354-434 2-84 (96)
62 2cjk_A Nuclear polyadenylated 99.6 2.1E-16 7.2E-21 140.6 7.2 154 158-332 9-164 (167)
63 2fy1_A RNA-binding motif prote 99.6 9.1E-16 3.1E-20 131.2 10.7 82 353-435 6-89 (116)
64 2ywk_A Putative RNA-binding pr 99.6 1.1E-15 3.8E-20 124.8 10.6 79 352-431 14-94 (95)
65 4a8x_A RNA-binding protein wit 99.6 8.8E-16 3E-20 123.2 9.9 79 353-432 3-85 (88)
66 1x5u_A Splicing factor 3B subu 99.6 1.5E-15 5E-20 126.4 11.1 83 352-435 13-98 (105)
67 1rk8_A CG8781-PA, CG8781-PA pr 99.6 9.6E-16 3.3E-20 138.6 10.8 131 301-433 11-153 (165)
68 2cq3_A RNA-binding protein 9; 99.6 2.5E-15 8.4E-20 124.8 12.3 81 253-334 12-93 (103)
69 1p27_B RNA-binding protein 8A; 99.6 1.1E-15 3.9E-20 127.3 10.2 80 352-432 21-103 (106)
70 3ucg_A Polyadenylate-binding p 99.6 1.8E-15 6.1E-20 121.9 10.9 79 353-432 5-85 (89)
71 3s8s_A Histone-lysine N-methyl 99.6 1.1E-15 3.8E-20 129.8 10.0 78 254-332 4-84 (110)
72 2cqi_A Nucleolysin TIAR; RNA r 99.6 2E-15 6.8E-20 125.4 11.4 80 253-333 12-92 (103)
73 2cpe_A RNA-binding protein EWS 99.6 1.5E-15 5.3E-20 128.1 10.9 81 351-432 12-103 (113)
74 1oo0_B CG8781-PA, drosophila Y 99.6 1.6E-15 5.4E-20 127.4 10.9 81 351-432 23-106 (110)
75 4f02_A Polyadenylate-binding p 99.6 4.9E-17 1.7E-21 152.4 1.6 155 159-332 22-179 (213)
76 2dng_A Eukaryotic translation 99.6 4.9E-15 1.7E-19 123.1 13.6 80 352-433 13-94 (103)
77 2dgp_A Bruno-like 4, RNA bindi 99.6 1.7E-15 5.8E-20 126.3 10.5 83 351-434 10-98 (106)
78 2div_A TRNA selenocysteine ass 99.6 1.3E-15 4.5E-20 125.4 9.7 80 353-433 8-95 (99)
79 2err_A Ataxin-2-binding protei 99.6 1E-15 3.4E-20 129.3 9.2 81 351-432 26-107 (109)
80 3s7r_A Heterogeneous nuclear r 99.6 2.4E-15 8.2E-20 120.9 10.6 77 352-429 9-87 (87)
81 2jwn_A Embryonic polyadenylate 99.6 2.4E-15 8.3E-20 128.9 11.1 83 350-433 32-116 (124)
82 1x4a_A Splicing factor, argini 99.6 4.6E-15 1.6E-19 124.5 12.5 80 352-433 20-100 (109)
83 2dgv_A HnRNP M, heterogeneous 99.6 3.1E-15 1.1E-19 121.3 11.1 80 254-334 6-86 (92)
84 2jrs_A RNA-binding protein 39; 99.6 2.1E-15 7.3E-20 127.2 10.4 81 351-432 23-106 (108)
85 2kt5_A RNA and export factor-b 99.6 3.4E-15 1.2E-19 128.3 11.7 86 352-438 33-120 (124)
86 1sjq_A Polypyrimidine tract-bi 99.6 2E-15 6.8E-20 127.8 9.8 79 352-435 14-95 (105)
87 1s79_A Lupus LA protein; RRM, 99.6 1.6E-15 5.6E-20 127.4 9.2 77 353-430 10-87 (103)
88 2khc_A Testis-specific RNP-typ 99.6 2.8E-15 9.4E-20 127.5 10.7 79 351-430 37-118 (118)
89 1x4b_A Heterogeneous nuclear r 99.6 6.1E-15 2.1E-19 125.1 12.7 85 351-436 24-110 (116)
90 1u6f_A Tcubp1, RNA-binding pro 99.6 3.9E-15 1.3E-19 130.1 11.7 84 351-435 39-125 (139)
91 3ulh_A THO complex subunit 4; 99.6 4.2E-15 1.4E-19 124.1 11.4 78 352-430 27-106 (107)
92 2dnm_A SRP46 splicing factor; 99.6 2.9E-15 1E-19 124.3 10.4 82 252-334 9-93 (103)
93 2fc9_A NCL protein; structure 99.6 3.8E-15 1.3E-19 123.2 11.0 82 352-437 13-96 (101)
94 2dh8_A DAZ-associated protein 99.6 3.5E-15 1.2E-19 124.3 10.7 81 352-433 14-96 (105)
95 3p5t_L Cleavage and polyadenyl 99.6 9.9E-16 3.4E-20 124.5 7.2 76 257-333 2-82 (90)
96 3ns6_A Eukaryotic translation 99.6 5.3E-16 1.8E-20 129.0 5.7 78 353-431 5-92 (100)
97 1s79_A Lupus LA protein; RRM, 99.6 1.9E-15 6.5E-20 126.9 9.1 80 252-332 7-87 (103)
98 2cqg_A TDP-43, TAR DNA-binding 99.6 1E-14 3.4E-19 121.1 13.3 84 352-437 13-98 (103)
99 1x4g_A Nucleolysin TIAR; struc 99.6 4.8E-15 1.6E-19 124.6 11.5 83 351-438 22-105 (109)
100 2ywk_A Putative RNA-binding pr 99.6 3E-15 1E-19 122.1 10.0 79 253-332 13-93 (95)
101 1wi8_A EIF-4B, eukaryotic tran 99.6 6.2E-15 2.1E-19 122.7 12.0 80 352-433 13-95 (104)
102 2d9p_A Polyadenylate-binding p 99.6 4E-15 1.4E-19 123.5 10.7 81 253-334 12-93 (103)
103 2cpf_A RNA binding motif prote 99.6 2.5E-15 8.6E-20 123.5 9.4 79 255-334 4-88 (98)
104 3s7r_A Heterogeneous nuclear r 99.6 3E-15 1E-19 120.3 9.6 79 252-331 7-87 (87)
105 2dhg_A TRNA selenocysteine ass 99.6 3.1E-15 1.1E-19 124.2 9.9 84 352-435 7-93 (104)
106 2lxi_A RNA-binding protein 10; 99.6 8.6E-16 2.9E-20 125.8 6.3 76 256-332 1-81 (91)
107 1p1t_A Cleavage stimulation fa 99.6 1.4E-15 4.7E-20 126.2 7.6 81 352-433 6-89 (104)
108 2cqc_A Arginine/serine-rich sp 99.6 3.9E-15 1.3E-19 121.3 10.1 79 253-332 12-93 (95)
109 2dnz_A Probable RNA-binding pr 99.6 6.9E-15 2.4E-19 120.0 11.6 79 255-334 4-85 (95)
110 2la6_A RNA-binding protein FUS 99.6 3.3E-15 1.1E-19 123.3 9.8 78 352-430 11-99 (99)
111 2kxn_B Transformer-2 protein h 99.6 3.3E-15 1.1E-19 130.3 10.3 81 351-432 43-126 (129)
112 2dgo_A Cytotoxic granule-assoc 99.6 7.9E-15 2.7E-19 124.1 12.4 82 252-334 11-95 (115)
113 2dgs_A DAZ-associated protein 99.6 6.7E-15 2.3E-19 121.3 11.6 80 253-333 7-88 (99)
114 3mdf_A Peptidyl-prolyl CIS-tra 99.6 2.4E-15 8.2E-20 120.1 8.6 78 254-332 5-85 (85)
115 3md3_A Nuclear and cytoplasmic 99.6 6.6E-16 2.3E-20 136.5 5.8 79 253-332 84-165 (166)
116 1x4a_A Splicing factor, argini 99.6 9.8E-15 3.3E-19 122.5 12.7 80 253-334 19-99 (109)
117 2err_A Ataxin-2-binding protei 99.6 2.1E-15 7.3E-20 127.2 8.6 80 252-332 25-105 (109)
118 2cpz_A CUG triplet repeat RNA- 99.6 5.5E-15 1.9E-19 125.2 11.2 81 253-334 22-105 (115)
119 3md1_A Nuclear and cytoplasmic 99.6 3.9E-15 1.3E-19 118.3 9.6 76 256-332 1-79 (83)
120 2cpi_A CCR4-NOT transcription 99.6 3.8E-15 1.3E-19 126.0 10.1 81 352-433 13-102 (111)
121 2dnh_A Bruno-like 5, RNA bindi 99.6 8.2E-15 2.8E-19 121.9 12.0 80 253-333 12-96 (105)
122 3pgw_S U1-70K; protein-RNA com 99.6 1E-15 3.5E-20 159.5 8.0 80 352-432 100-182 (437)
123 2lkz_A RNA-binding protein 5; 99.6 1.5E-15 5.3E-20 125.9 7.4 78 254-332 7-93 (95)
124 3ex7_B RNA-binding protein 8A; 99.6 2.7E-15 9.3E-20 129.0 9.2 83 352-435 20-105 (126)
125 2dgx_A KIAA0430 protein; RRM d 99.6 4.1E-15 1.4E-19 122.4 9.9 77 255-333 8-89 (96)
126 2cq0_A Eukaryotic translation 99.6 4.7E-15 1.6E-19 123.1 10.2 80 253-333 12-94 (103)
127 2qfj_A FBP-interacting repress 99.6 3E-15 1E-19 138.6 10.0 81 253-334 122-205 (216)
128 2cqp_A RNA-binding protein 12; 99.6 2.6E-15 8.9E-20 123.4 8.6 80 352-432 13-95 (98)
129 2e5h_A Zinc finger CCHC-type a 99.6 3.6E-15 1.2E-19 121.5 9.3 78 254-332 14-94 (94)
130 1h2v_Z 20 kDa nuclear CAP bind 99.6 8.2E-15 2.8E-19 130.9 12.3 82 352-434 37-121 (156)
131 2ki2_A SS-DNA binding protein 99.6 6.6E-16 2.3E-20 125.0 4.6 81 355-437 2-85 (90)
132 2dnq_A RNA-binding protein 4B; 99.6 9E-15 3.1E-19 118.5 11.4 77 352-435 6-83 (90)
133 1wf1_A RNA-binding protein RAL 99.6 5.4E-15 1.9E-19 124.4 10.4 76 353-435 26-103 (110)
134 2mss_A Protein (musashi1); RNA 99.6 1.8E-15 6.3E-20 118.2 6.9 73 356-429 1-75 (75)
135 2cph_A RNA binding motif prote 99.6 7.6E-15 2.6E-19 122.3 11.1 81 252-333 11-96 (107)
136 3bs9_A Nucleolysin TIA-1 isofo 99.6 3.9E-15 1.3E-19 119.4 8.9 77 255-332 5-84 (87)
137 3r27_A HnRNP L, heterogeneous 99.6 4.6E-15 1.6E-19 124.5 9.6 76 352-432 19-97 (100)
138 2nlw_A Eukaryotic translation 99.6 3.8E-15 1.3E-19 124.8 9.0 80 352-432 13-100 (105)
139 2cq1_A PTB-like protein L; RRM 99.6 1.3E-14 4.5E-19 121.6 12.3 79 352-435 13-94 (101)
140 1whw_A Hypothetical protein ri 99.6 8.2E-15 2.8E-19 120.6 10.7 80 254-334 6-88 (99)
141 1x5u_A Splicing factor 3B subu 99.6 8.2E-15 2.8E-19 121.9 10.8 80 253-333 12-94 (105)
142 2dgt_A RNA-binding protein 30; 99.6 1.7E-14 5.7E-19 117.4 12.4 78 352-436 8-86 (92)
143 1b7f_A Protein (SXL-lethal pro 99.6 1.3E-15 4.4E-20 135.4 6.2 154 159-331 10-168 (168)
144 1p27_B RNA-binding protein 8A; 99.6 6.2E-15 2.1E-19 122.8 10.0 79 253-332 20-101 (106)
145 2ad9_A Polypyrimidine tract-bi 99.6 5.8E-15 2E-19 127.6 10.1 82 352-438 29-113 (119)
146 1sjq_A Polypyrimidine tract-bi 99.6 6.2E-15 2.1E-19 124.8 10.0 77 253-334 13-92 (105)
147 2do4_A Squamous cell carcinoma 99.6 9E-15 3.1E-19 120.7 10.8 79 253-332 14-94 (100)
148 2fy1_A RNA-binding motif prote 99.6 9.2E-15 3.2E-19 124.9 11.2 80 254-334 5-86 (116)
149 1x4c_A Splicing factor, argini 99.6 1.3E-14 4.6E-19 121.9 12.0 76 353-434 14-95 (108)
150 2khc_A Testis-specific RNP-typ 99.6 1.4E-14 4.9E-19 123.0 12.1 80 252-332 36-118 (118)
151 2dgw_A Probable RNA-binding pr 99.6 1.2E-14 4.2E-19 117.9 11.1 78 353-432 9-87 (91)
152 2dis_A Unnamed protein product 99.6 7.4E-15 2.5E-19 123.0 10.1 82 353-435 7-95 (109)
153 2ek1_A RNA-binding protein 12; 99.6 3.1E-15 1.1E-19 122.1 7.6 78 353-431 14-94 (95)
154 2la6_A RNA-binding protein FUS 99.6 8E-15 2.7E-19 120.9 10.0 79 252-331 9-98 (99)
155 3n9u_C Cleavage and polyadenyl 99.6 6.8E-15 2.3E-19 132.6 10.4 78 353-431 54-136 (156)
156 2x1f_A MRNA 3'-END-processing 99.6 7E-15 2.4E-19 120.6 9.6 77 256-333 2-81 (96)
157 2cpd_A Apobec-1 stimulating pr 99.6 2.4E-14 8.3E-19 118.0 12.9 78 351-435 12-92 (99)
158 2dnp_A RNA-binding protein 14; 99.6 1.3E-14 4.5E-19 117.6 11.1 77 352-435 7-84 (90)
159 2m2b_A RNA-binding protein 10; 99.6 2.7E-15 9.1E-20 130.6 7.3 82 350-433 19-109 (131)
160 2hvz_A Splicing factor, argini 99.6 4.1E-15 1.4E-19 123.0 8.1 75 355-433 1-76 (101)
161 1x5o_A RNA binding motif, sing 99.6 9E-15 3.1E-19 123.6 10.3 80 352-432 23-112 (114)
162 2cpy_A RNA-binding protein 12; 99.6 3.8E-15 1.3E-19 126.6 8.0 80 352-432 13-94 (114)
163 2krb_A Eukaryotic translation 99.6 5.2E-15 1.8E-19 117.8 8.2 73 256-329 1-81 (81)
164 2jrs_A RNA-binding protein 39; 99.6 1.2E-14 4.2E-19 122.6 11.0 80 252-332 22-104 (108)
165 2dgu_A Heterogeneous nuclear r 99.6 1.7E-14 5.8E-19 119.9 11.7 79 352-437 9-88 (103)
166 2cq4_A RNA binding motif prote 99.6 7.4E-15 2.5E-19 124.2 9.5 79 352-431 23-103 (114)
167 1x4d_A Matrin 3; structural ge 99.6 4.6E-15 1.6E-19 124.8 8.1 77 352-433 13-93 (102)
168 2rs2_A Musashi-1, RNA-binding 99.6 1.4E-14 5E-19 122.2 11.3 81 351-432 22-104 (109)
169 2wbr_A GW182, gawky, LD47780P; 99.6 8E-15 2.7E-19 120.0 9.3 72 354-430 7-79 (89)
170 1x4e_A RNA binding motif, sing 99.6 1.9E-15 6.7E-20 120.9 5.5 77 353-430 4-83 (85)
171 1x4h_A RNA-binding protein 28; 99.6 1.5E-14 5.1E-19 121.3 11.2 80 253-333 12-100 (111)
172 3ulh_A THO complex subunit 4; 99.6 8.5E-15 2.9E-19 122.2 9.5 79 253-332 26-106 (107)
173 3nmr_A Cugbp ELAV-like family 99.6 1.6E-15 5.5E-20 135.4 5.5 77 254-331 93-174 (175)
174 1x4e_A RNA binding motif, sing 99.6 6.1E-15 2.1E-19 118.0 8.3 78 254-332 3-83 (85)
175 1why_A Hypothetical protein ri 99.6 1.3E-14 4.5E-19 119.2 10.4 76 352-432 15-93 (97)
176 1x5t_A Splicing factor 3B subu 99.6 8.2E-15 2.8E-19 119.8 9.0 78 255-333 4-85 (96)
177 3ucg_A Polyadenylate-binding p 99.6 1.2E-14 4E-19 117.0 9.8 78 255-333 5-84 (89)
178 3ns6_A Eukaryotic translation 99.6 3.6E-15 1.2E-19 123.9 6.9 78 254-332 4-91 (100)
179 2ytc_A PRE-mRNA-splicing facto 99.6 1.5E-14 5.2E-19 115.5 10.4 74 352-430 10-85 (85)
180 2div_A TRNA selenocysteine ass 99.6 9.4E-15 3.2E-19 120.2 9.4 79 254-333 7-93 (99)
181 2dgp_A Bruno-like 4, RNA bindi 99.6 1.2E-14 4.1E-19 121.1 10.0 81 252-333 9-95 (106)
182 2krb_A Eukaryotic translation 99.6 3.3E-15 1.1E-19 118.9 6.3 72 355-427 2-81 (81)
183 1x5s_A Cold-inducible RNA-bind 99.6 9.1E-15 3.1E-19 121.0 9.1 79 254-333 10-91 (102)
184 2dhg_A TRNA selenocysteine ass 99.6 1.5E-14 5.3E-19 120.0 10.5 80 253-333 6-89 (104)
185 1wez_A HnRNP H', FTP-3, hetero 99.6 6E-15 2.1E-19 123.4 8.0 83 352-436 13-96 (102)
186 2cqd_A RNA-binding region cont 99.6 2E-14 6.7E-19 122.0 11.2 81 252-334 13-96 (116)
187 2dh8_A DAZ-associated protein 99.6 1.5E-14 5.2E-19 120.4 10.3 80 253-333 13-94 (105)
188 2jvo_A Nucleolar protein 3; nu 99.6 1.2E-14 4E-19 122.8 9.7 77 349-432 26-103 (108)
189 2mss_A Protein (musashi1); RNA 99.6 4.8E-15 1.6E-19 115.9 6.8 73 258-331 1-75 (75)
190 2cpx_A Hypothetical protein FL 99.6 2E-14 6.7E-19 121.5 11.1 79 352-433 23-106 (115)
191 2jvr_A Nucleolar protein 3; RN 99.6 8.1E-15 2.8E-19 125.1 8.7 77 353-432 27-105 (111)
192 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.2E-14 7.7E-19 124.8 11.7 78 351-429 60-140 (140)
193 1wi8_A EIF-4B, eukaryotic tran 99.6 1.3E-14 4.4E-19 120.8 9.5 78 254-333 13-93 (104)
194 2hgn_A Heterogeneous nuclear r 99.5 1.7E-15 5.8E-20 134.3 4.4 125 296-435 1-126 (139)
195 2dng_A Eukaryotic translation 99.5 2E-14 7E-19 119.3 10.6 79 253-333 12-92 (103)
196 1wex_A Hypothetical protein (r 99.5 1.2E-14 4E-19 122.5 9.2 77 352-433 13-92 (104)
197 2kxn_B Transformer-2 protein h 99.5 1.6E-14 5.4E-19 126.0 10.2 80 253-333 43-125 (129)
198 2kt5_A RNA and export factor-b 99.5 4.4E-14 1.5E-18 121.3 12.8 81 253-334 32-114 (124)
199 2cq4_A RNA binding motif prote 99.5 8.2E-15 2.8E-19 124.0 8.1 79 253-332 22-102 (114)
200 2nlw_A Eukaryotic translation 99.5 9.7E-15 3.3E-19 122.2 8.4 79 253-332 12-98 (105)
201 1fjc_A Nucleolin RBD2, protein 99.5 1.4E-14 4.7E-19 118.6 9.0 79 352-434 14-93 (96)
202 2cpi_A CCR4-NOT transcription 99.5 9.9E-15 3.4E-19 123.4 8.4 80 254-334 13-101 (111)
203 2db1_A Heterogeneous nuclear r 99.5 1.5E-14 5.1E-19 123.9 9.6 77 353-430 16-96 (118)
204 2cpj_A Non-POU domain-containi 99.5 1.5E-14 5.2E-19 119.2 9.3 77 352-433 13-90 (99)
205 2do0_A HnRNP M, heterogeneous 99.5 3.4E-14 1.2E-18 119.9 11.6 80 254-334 13-94 (114)
206 3lqv_A PRE-mRNA branch site pr 99.5 1.2E-14 4.1E-19 122.9 8.9 77 353-431 7-84 (115)
207 2cqh_A IGF-II mRNA-binding pro 99.5 1.2E-14 4E-19 118.5 8.5 75 353-433 7-84 (93)
208 1whx_A Hypothetical protein ri 99.5 2E-14 6.7E-19 121.9 10.2 76 353-433 9-85 (111)
209 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1E-14 3.5E-19 120.7 8.2 79 254-333 10-91 (102)
210 1oo0_B CG8781-PA, drosophila Y 99.5 1.5E-14 5E-19 121.5 9.3 79 253-332 23-104 (110)
211 1uaw_A Mouse-musashi-1; RNP-ty 99.5 4.6E-15 1.6E-19 116.2 5.8 73 355-429 1-76 (77)
212 4a8x_A RNA-binding protein wit 99.5 1.2E-14 4.1E-19 116.6 8.3 77 255-332 3-83 (88)
213 1nu4_A U1A RNA binding domain; 99.5 9.4E-15 3.2E-19 119.6 7.7 78 353-432 7-89 (97)
214 2la4_A Nuclear and cytoplasmic 99.5 1.2E-14 4.1E-19 120.2 8.4 74 353-431 26-100 (101)
215 2cpe_A RNA-binding protein EWS 99.5 2.6E-14 8.8E-19 120.6 10.2 82 252-334 11-103 (113)
216 1wg5_A Heterogeneous nuclear r 99.5 2.8E-14 9.6E-19 119.2 10.2 80 352-432 13-94 (104)
217 2fc8_A NCL protein; structure 99.5 4.8E-14 1.6E-18 116.6 11.4 81 351-435 12-95 (102)
218 2kvi_A Nuclear polyadenylated 99.5 1.2E-14 4.1E-19 119.5 7.7 79 352-437 8-88 (96)
219 2wbr_A GW182, gawky, LD47780P; 99.5 1.4E-14 4.9E-19 118.6 8.0 72 255-331 6-78 (89)
220 2xnq_A Nuclear polyadenylated 99.5 4.2E-14 1.4E-18 116.9 11.0 75 351-432 19-95 (97)
221 1u6f_A Tcubp1, RNA-binding pro 99.5 3.3E-14 1.1E-18 124.2 10.9 82 252-334 38-122 (139)
222 2cqg_A TDP-43, TAR DNA-binding 99.5 4.3E-14 1.5E-18 117.2 11.0 81 252-334 11-93 (103)
223 2j76_E EIF-4B, EIF4B, eukaryot 99.5 7.1E-15 2.4E-19 121.9 6.0 80 351-432 16-98 (100)
224 1p1t_A Cleavage stimulation fa 99.5 7.4E-15 2.5E-19 121.8 6.1 78 254-332 6-86 (104)
225 2j76_E EIF-4B, EIF4B, eukaryot 99.5 9.9E-15 3.4E-19 121.0 6.9 79 252-332 15-96 (100)
226 2dnn_A RNA-binding protein 12; 99.5 2.7E-14 9.2E-19 121.4 9.7 75 354-430 16-91 (109)
227 2dnq_A RNA-binding protein 4B; 99.5 6E-14 2.1E-18 113.6 11.3 74 254-334 6-80 (90)
228 2a3j_A U1 small nuclear ribonu 99.5 2.1E-14 7.2E-19 125.3 9.1 78 353-432 28-110 (127)
229 2g4b_A Splicing factor U2AF 65 99.5 5.4E-15 1.8E-19 132.0 5.4 76 255-331 93-171 (172)
230 1iqt_A AUF1, heterogeneous nuc 99.5 5.4E-15 1.8E-19 115.4 4.7 73 356-429 1-75 (75)
231 2jwn_A Embryonic polyadenylate 99.5 1.7E-14 5.9E-19 123.6 8.2 80 253-333 33-114 (124)
232 2cq1_A PTB-like protein L; RRM 99.5 5.4E-14 1.8E-18 117.9 10.9 76 254-334 13-91 (101)
233 3ex7_B RNA-binding protein 8A; 99.5 3.3E-14 1.1E-18 122.2 9.8 81 253-334 19-102 (126)
234 1wez_A HnRNP H', FTP-3, hetero 99.5 1.9E-14 6.6E-19 120.3 8.1 78 254-333 13-91 (102)
235 3r27_A HnRNP L, heterogeneous 99.5 4.4E-14 1.5E-18 118.5 10.2 76 253-333 18-96 (100)
236 3n9u_C Cleavage and polyadenyl 99.5 2.2E-14 7.6E-19 129.2 9.0 77 255-332 54-135 (156)
237 1wg5_A Heterogeneous nuclear r 99.5 3.1E-14 1.1E-18 118.9 9.2 78 254-332 13-92 (104)
238 2e5j_A Methenyltetrahydrofolat 99.5 2.6E-14 9E-19 117.5 8.6 77 352-432 17-94 (97)
239 2rs2_A Musashi-1, RNA-binding 99.5 3.2E-14 1.1E-18 120.1 9.2 80 252-332 21-102 (109)
240 2ad9_A Polypyrimidine tract-bi 99.5 4.1E-14 1.4E-18 122.3 10.1 75 255-334 30-107 (119)
241 1x4g_A Nucleolysin TIAR; struc 99.5 4.7E-14 1.6E-18 118.5 10.2 78 252-334 21-99 (109)
242 2e5j_A Methenyltetrahydrofolat 99.5 3.7E-14 1.3E-18 116.7 9.3 76 253-332 16-92 (97)
243 2ki2_A SS-DNA binding protein 99.5 9.3E-15 3.2E-19 118.2 5.5 76 257-334 2-80 (90)
244 1wex_A Hypothetical protein (r 99.5 6.1E-14 2.1E-18 118.1 10.6 76 254-334 13-91 (104)
245 1x4b_A Heterogeneous nuclear r 99.5 4.4E-14 1.5E-18 119.8 9.8 79 254-333 25-105 (116)
246 2db1_A Heterogeneous nuclear r 99.5 1.7E-14 5.7E-19 123.6 7.3 79 253-332 14-96 (118)
247 2cpy_A RNA-binding protein 12; 99.5 1.8E-14 6E-19 122.4 7.3 79 253-332 12-92 (114)
248 2la4_A Nuclear and cytoplasmic 99.5 4.1E-14 1.4E-18 116.9 9.3 74 254-332 25-99 (101)
249 2dgw_A Probable RNA-binding pr 99.5 4.2E-14 1.4E-18 114.7 9.1 79 253-333 7-86 (91)
250 2xs2_A Deleted in azoospermia- 99.5 2.7E-14 9.2E-19 118.3 8.0 78 352-431 7-85 (102)
251 1x4d_A Matrin 3; structural ge 99.5 3.4E-14 1.2E-18 119.5 8.6 75 255-334 14-92 (102)
252 1iqt_A AUF1, heterogeneous nuc 99.5 1.2E-14 4.1E-19 113.4 5.4 73 258-331 1-75 (75)
253 1fxl_A Paraneoplastic encephal 99.5 7.9E-14 2.7E-18 123.2 11.4 80 354-434 2-84 (167)
254 1uaw_A Mouse-musashi-1; RNP-ty 99.5 1.5E-14 5.3E-19 113.2 6.0 73 257-331 1-76 (77)
255 2hgl_A HNRPF protein, heteroge 99.5 1.7E-14 5.8E-19 127.4 7.0 78 353-431 43-124 (136)
256 1x5o_A RNA binding motif, sing 99.5 8.5E-14 2.9E-18 117.5 11.0 79 253-332 22-110 (114)
257 1why_A Hypothetical protein ri 99.5 7.9E-14 2.7E-18 114.5 10.4 74 255-333 16-92 (97)
258 2lea_A Serine/arginine-rich sp 99.5 1.9E-14 6.5E-19 126.3 7.0 81 253-334 44-127 (135)
259 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 5.2E-14 1.8E-18 122.5 9.7 76 255-331 62-140 (140)
260 1x5p_A Negative elongation fac 99.5 1.5E-13 5.2E-18 112.9 12.0 74 352-432 13-87 (97)
261 2ytc_A PRE-mRNA-splicing facto 99.5 5.1E-14 1.7E-18 112.4 8.8 75 253-332 9-85 (85)
262 2ek1_A RNA-binding protein 12; 99.5 1.7E-14 6E-19 117.6 6.2 77 255-332 14-93 (95)
263 1h2v_Z 20 kDa nuclear CAP bind 99.5 4.4E-14 1.5E-18 126.1 9.3 80 253-333 36-118 (156)
264 2hgl_A HNRPF protein, heteroge 99.5 2.3E-14 7.7E-19 126.6 7.3 78 254-332 42-123 (136)
265 1fj7_A Nucleolin RBD1, protein 99.5 8.1E-15 2.8E-19 121.2 4.2 78 353-432 16-95 (101)
266 2lmi_A GRSF-1, G-rich sequence 99.5 9.5E-15 3.3E-19 122.7 4.6 79 352-431 9-91 (107)
267 2dis_A Unnamed protein product 99.5 6.4E-14 2.2E-18 117.2 9.6 79 255-334 7-92 (109)
268 1whx_A Hypothetical protein ri 99.5 4.3E-14 1.5E-18 119.8 8.6 75 255-334 9-84 (111)
269 2cqp_A RNA-binding protein 12; 99.5 2.3E-14 8E-19 117.6 6.8 77 255-332 14-93 (98)
270 1wel_A RNA-binding protein 12; 99.5 1.9E-14 6.4E-19 123.9 6.3 78 254-332 23-102 (124)
271 1wg1_A KIAA1579 protein, homol 99.5 5.4E-14 1.8E-18 113.7 8.5 75 353-433 4-79 (88)
272 2lmi_A GRSF-1, G-rich sequence 99.5 1.9E-14 6.6E-19 120.8 5.9 79 253-332 8-90 (107)
273 2kn4_A Immunoglobulin G-bindin 99.5 6.4E-14 2.2E-18 124.9 9.7 81 253-334 67-150 (158)
274 2jvo_A Nucleolar protein 3; nu 99.5 7E-14 2.4E-18 118.0 9.4 75 252-333 27-102 (108)
275 1x4f_A Matrin 3; structural ge 99.5 4.4E-14 1.5E-18 120.8 8.2 77 351-432 22-102 (112)
276 1x4c_A Splicing factor, argini 99.5 8.2E-14 2.8E-18 117.0 9.6 73 255-333 14-92 (108)
277 2jvr_A Nucleolar protein 3; RN 99.5 3.4E-14 1.2E-18 121.2 7.3 76 254-332 26-103 (111)
278 2e5g_A U6 snRNA-specific termi 99.5 1.7E-13 5.7E-18 112.0 11.2 75 255-333 7-81 (94)
279 2xnq_A Nuclear polyadenylated 99.5 9.1E-14 3.1E-18 114.8 9.6 74 252-332 18-93 (97)
280 3q2s_C Cleavage and polyadenyl 99.5 4.1E-14 1.4E-18 135.1 8.3 78 353-431 67-149 (229)
281 2cpj_A Non-POU domain-containi 99.5 1.2E-13 4.2E-18 113.8 10.1 76 253-333 12-88 (99)
282 3egn_A RNA-binding protein 40; 99.5 4.1E-14 1.4E-18 124.5 7.5 78 353-432 44-130 (143)
283 2dgt_A RNA-binding protein 30; 99.5 1.5E-13 5.2E-18 111.7 10.3 75 253-334 7-82 (92)
284 2dnn_A RNA-binding protein 12; 99.5 4.7E-14 1.6E-18 119.8 7.5 76 255-332 15-91 (109)
285 2a3j_A U1 small nuclear ribonu 99.5 8.4E-14 2.9E-18 121.5 9.2 77 254-332 27-108 (127)
286 2e5g_A U6 snRNA-specific termi 99.5 2.3E-13 8E-18 111.2 11.2 76 353-432 7-82 (94)
287 2i2y_A Fusion protein consists 99.5 9.8E-14 3.4E-18 123.0 9.5 77 252-332 69-146 (150)
288 2dnp_A RNA-binding protein 14; 99.5 1.1E-13 3.7E-18 112.1 8.9 75 253-334 6-81 (90)
289 2yh0_A Splicing factor U2AF 65 99.5 5.2E-14 1.8E-18 128.4 7.7 79 253-332 111-192 (198)
290 1wel_A RNA-binding protein 12; 99.5 4.3E-14 1.5E-18 121.6 6.7 78 353-431 24-103 (124)
291 2hgm_A HNRPF protein, heteroge 99.5 7.3E-14 2.5E-18 121.8 8.1 77 254-332 40-119 (126)
292 2f3j_A RNA and export factor b 99.5 7.1E-14 2.4E-18 128.4 8.4 83 353-436 87-171 (177)
293 2e44_A Insulin-like growth fac 99.5 1.3E-13 4.3E-18 112.8 9.0 77 353-432 14-92 (96)
294 2fc9_A NCL protein; structure 99.5 1.5E-13 5E-18 113.6 9.4 78 253-334 12-91 (101)
295 3zzy_A Polypyrimidine tract-bi 99.5 2.4E-13 8.3E-18 119.2 11.2 76 353-432 27-106 (130)
296 2cpd_A Apobec-1 stimulating pr 99.5 3.6E-13 1.2E-17 111.0 11.7 74 253-333 12-88 (99)
297 2lcw_A RNA-binding protein FUS 99.2 4.4E-15 1.5E-19 126.2 0.0 80 352-432 5-95 (116)
298 1l3k_A Heterogeneous nuclear r 99.5 2.3E-13 7.9E-18 123.9 11.5 80 352-432 11-92 (196)
299 2kvi_A Nuclear polyadenylated 99.5 1.1E-13 3.8E-18 113.7 8.4 75 253-334 7-83 (96)
300 1nu4_A U1A RNA binding domain; 99.5 4.2E-14 1.5E-18 115.7 5.7 78 253-332 5-87 (97)
301 3beg_B Splicing factor, argini 99.5 1.4E-13 4.7E-18 117.3 8.8 74 353-432 15-94 (115)
302 2hgm_A HNRPF protein, heteroge 99.5 5.8E-14 2E-18 122.5 6.6 77 353-431 41-120 (126)
303 2cpx_A Hypothetical protein FL 99.5 2.1E-13 7E-18 115.2 9.6 78 254-334 23-105 (115)
304 1wf1_A RNA-binding protein RAL 99.5 2.3E-13 7.9E-18 114.4 9.6 72 255-333 26-99 (110)
305 2m2b_A RNA-binding protein 10; 99.5 5.6E-14 1.9E-18 122.2 6.0 79 253-333 20-107 (131)
306 1fj7_A Nucleolin RBD1, protein 99.4 5.3E-14 1.8E-18 116.3 5.4 77 254-332 15-93 (101)
307 1sjr_A Polypyrimidine tract-bi 99.4 2.2E-13 7.6E-18 123.9 9.9 77 353-432 45-124 (164)
308 2dha_A FLJ20171 protein; RRM d 99.4 6.3E-14 2.2E-18 121.6 6.0 78 352-430 21-103 (123)
309 2voo_A Lupus LA protein; RNA-b 99.4 5.7E-13 2E-17 123.9 12.8 80 351-431 106-186 (193)
310 2hgn_A Heterogeneous nuclear r 99.4 3.9E-14 1.3E-18 125.5 4.7 78 254-333 44-122 (139)
311 1rk8_A CG8781-PA, CG8781-PA pr 99.4 2.2E-13 7.6E-18 123.0 9.5 80 253-333 69-151 (165)
312 1fjc_A Nucleolin RBD2, protein 99.4 9E-14 3.1E-18 113.7 6.1 76 253-332 13-89 (96)
313 2f3j_A RNA and export factor b 99.4 9.6E-13 3.3E-17 120.8 13.6 81 253-334 85-167 (177)
314 3q2s_C Cleavage and polyadenyl 99.4 1.6E-13 5.5E-18 131.0 8.7 77 255-332 67-148 (229)
315 3d2w_A TAR DNA-binding protein 99.4 3.2E-13 1.1E-17 110.0 9.2 76 352-432 9-84 (89)
316 1wf0_A TDP-43, TAR DNA-binding 99.4 2.1E-13 7.1E-18 110.0 8.0 77 353-434 4-80 (88)
317 2dgu_A Heterogeneous nuclear r 99.4 2.8E-13 9.7E-18 112.5 8.8 73 255-334 10-83 (103)
318 2xs2_A Deleted in azoospermia- 99.4 7.4E-14 2.5E-18 115.6 5.2 77 254-332 7-84 (102)
319 2hzc_A Splicing factor U2AF 65 99.4 4.9E-13 1.7E-17 107.0 9.7 71 353-428 5-86 (87)
320 1x4f_A Matrin 3; structural ge 99.4 3.3E-13 1.1E-17 115.4 9.2 76 253-333 22-101 (112)
321 3tyt_A Heterogeneous nuclear r 99.4 5.4E-13 1.8E-17 125.0 11.3 76 353-432 3-80 (205)
322 1qm9_A Polypyrimidine tract-bi 99.4 1.9E-12 6.6E-17 118.7 14.6 75 254-332 118-195 (198)
323 2e44_A Insulin-like growth fac 99.4 3.1E-13 1.1E-17 110.4 8.3 75 255-332 14-90 (96)
324 2cq2_A Hypothetical protein LO 99.4 3.1E-13 1.1E-17 115.9 8.4 74 353-431 24-105 (114)
325 2dha_A FLJ20171 protein; RRM d 99.4 1.5E-13 5.1E-18 119.3 6.5 78 254-332 21-103 (123)
326 2pe8_A Splicing factor 45; RRM 99.4 1.1E-12 3.7E-17 110.6 11.3 79 352-431 6-93 (105)
327 2hzc_A Splicing factor U2AF 65 99.4 3.4E-13 1.2E-17 107.9 7.8 71 255-330 5-86 (87)
328 1x5p_A Negative elongation fac 99.4 1.4E-12 4.8E-17 107.1 11.7 73 254-333 13-86 (97)
329 2cqh_A IGF-II mRNA-binding pro 99.4 1.7E-13 5.7E-18 111.5 5.9 74 254-333 6-82 (93)
330 1wg1_A KIAA1579 protein, homol 99.4 2.1E-13 7.3E-18 110.2 6.5 73 255-333 4-77 (88)
331 2adc_A Polypyrimidine tract-bi 99.4 1.3E-12 4.3E-17 123.7 12.8 75 254-332 149-226 (229)
332 2e5i_A Heterogeneous nuclear r 99.4 7.8E-13 2.7E-17 115.0 10.1 75 353-432 24-102 (124)
333 2lcw_A RNA-binding protein FUS 99.1 2E-14 7E-19 122.0 0.0 80 253-333 4-94 (116)
334 2fc8_A NCL protein; structure 99.4 5.6E-13 1.9E-17 110.1 8.7 78 252-333 11-91 (102)
335 3pgw_S U1-70K; protein-RNA com 99.4 3.8E-13 1.3E-17 140.1 9.4 80 253-333 99-181 (437)
336 3d2w_A TAR DNA-binding protein 99.4 4.1E-13 1.4E-17 109.4 7.5 73 253-332 8-82 (89)
337 3egn_A RNA-binding protein 40; 99.4 2.7E-13 9.2E-18 119.2 6.1 78 254-333 43-129 (143)
338 3beg_B Splicing factor, argini 99.4 4.4E-13 1.5E-17 114.1 7.2 70 255-330 15-85 (115)
339 2cq2_A Hypothetical protein LO 99.4 5.5E-13 1.9E-17 114.4 7.0 74 254-332 23-104 (114)
340 1fje_B Nucleolin RBD12, protei 99.4 1.1E-13 3.9E-18 124.1 2.6 75 254-332 97-172 (175)
341 2bz2_A Negative elongation fac 99.4 1.1E-12 3.7E-17 113.1 8.3 74 352-432 37-111 (121)
342 1sjr_A Polypyrimidine tract-bi 99.4 1.5E-12 5.1E-17 118.4 9.4 77 255-334 45-124 (164)
343 1wf0_A TDP-43, TAR DNA-binding 99.4 8.2E-13 2.8E-17 106.4 6.6 74 255-333 4-77 (88)
344 2diu_A KIAA0430 protein; struc 99.3 1.5E-12 5.1E-17 107.8 7.8 69 355-432 10-84 (96)
345 2dnl_A Cytoplasmic polyadenyla 99.3 1.4E-12 4.8E-17 110.6 7.3 73 255-331 7-85 (114)
346 3zzy_A Polypyrimidine tract-bi 99.3 2.9E-12 9.8E-17 112.3 9.1 76 255-334 27-106 (130)
347 2voo_A Lupus LA protein; RNA-b 99.3 2.7E-12 9.2E-17 119.3 9.4 79 254-333 107-186 (193)
348 3pgw_A U1-A; protein-RNA compl 99.3 3.6E-12 1.2E-16 123.3 10.7 80 352-433 7-91 (282)
349 2e5i_A Heterogeneous nuclear r 99.3 9.2E-12 3.2E-16 108.2 12.1 74 256-334 25-102 (124)
350 2dnl_A Cytoplasmic polyadenyla 99.3 3.6E-12 1.2E-16 108.0 9.3 72 353-428 7-84 (114)
351 2bz2_A Negative elongation fac 99.3 2.7E-12 9.1E-17 110.6 8.6 74 253-333 36-110 (121)
352 2dit_A HIV TAT specific factor 99.3 9.9E-12 3.4E-16 105.1 10.5 80 350-432 11-102 (112)
353 2diu_A KIAA0430 protein; struc 99.3 7E-12 2.4E-16 103.7 8.9 68 257-333 10-83 (96)
354 3u1l_A PRE-mRNA-splicing facto 99.3 3.2E-12 1.1E-16 123.0 8.0 80 353-437 133-234 (240)
355 2pe8_A Splicing factor 45; RRM 99.3 9.7E-12 3.3E-16 104.7 9.7 79 253-332 5-92 (105)
356 3v4m_A Splicing factor U2AF 65 99.3 8.7E-12 3E-16 105.0 8.7 78 353-431 4-96 (105)
357 2j8a_A Histone-lysine N-methyl 99.3 4.5E-12 1.5E-16 110.7 6.7 76 257-332 3-94 (136)
358 2j8a_A Histone-lysine N-methyl 99.3 7.5E-12 2.6E-16 109.3 7.8 76 355-431 3-95 (136)
359 3sde_A Paraspeckle component 1 99.3 1.4E-11 4.9E-16 118.7 10.4 76 351-431 19-95 (261)
360 1jmt_A Splicing factor U2AF 35 99.2 3.9E-12 1.3E-16 106.9 5.0 70 359-429 20-103 (104)
361 2dit_A HIV TAT specific factor 99.2 3.6E-11 1.2E-15 101.6 9.4 77 253-332 12-100 (112)
362 3u1l_A PRE-mRNA-splicing facto 99.2 2.1E-11 7.2E-16 117.4 8.1 77 253-334 131-229 (240)
363 3ue2_A Poly(U)-binding-splicin 99.2 4.4E-11 1.5E-15 103.0 8.8 78 352-430 18-107 (118)
364 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.9E-10 6.6E-15 96.1 11.2 63 364-432 27-90 (100)
365 1jmt_A Splicing factor U2AF 35 99.1 3.3E-11 1.1E-15 101.2 3.7 70 261-331 20-103 (104)
366 3s6e_A RNA-binding protein 39; 99.1 2.8E-10 9.4E-15 97.4 9.1 75 353-430 6-91 (114)
367 3v4m_A Splicing factor U2AF 65 99.1 2E-10 7E-15 96.5 7.1 77 255-332 4-95 (105)
368 3tht_A Alkylated DNA repair pr 99.0 3.3E-10 1.1E-14 114.4 8.9 74 352-430 16-97 (345)
369 3ue2_A Poly(U)-binding-splicin 99.0 5.3E-10 1.8E-14 96.1 7.4 77 255-332 19-107 (118)
370 3tht_A Alkylated DNA repair pr 99.0 5.2E-10 1.8E-14 113.0 7.8 75 253-332 15-97 (345)
371 2d9o_A DNAJ (HSP40) homolog, s 98.9 9.3E-09 3.2E-13 85.8 11.5 62 266-333 27-89 (100)
372 3s6e_A RNA-binding protein 39; 98.9 5.9E-09 2E-13 89.1 8.3 76 254-332 5-91 (114)
373 2dnr_A Synaptojanin-1; RRM dom 98.8 2.2E-08 7.6E-13 82.0 8.9 72 354-432 7-86 (91)
374 1owx_A Lupus LA protein, SS-B, 98.7 6.9E-08 2.3E-12 83.4 8.9 73 254-331 16-93 (121)
375 3dxb_A Thioredoxin N-terminall 98.5 1.1E-07 3.9E-12 89.0 7.6 64 366-430 141-211 (222)
376 2dnr_A Synaptojanin-1; RRM dom 98.5 1.5E-07 5.2E-12 77.0 7.2 71 255-332 6-84 (91)
377 1owx_A Lupus LA protein, SS-B, 98.5 2.1E-07 7.2E-12 80.3 8.3 73 352-429 16-93 (121)
378 1ufw_A Synaptojanin 2; RNP dom 98.4 2.3E-07 8E-12 76.4 5.1 71 353-430 14-93 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.3 7E-07 2.4E-11 73.6 6.3 70 255-331 14-92 (95)
380 3dxb_A Thioredoxin N-terminall 98.2 1.3E-06 4.5E-11 81.7 7.0 64 268-332 141-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 97.8 5.9E-05 2E-09 63.6 7.9 73 254-330 19-96 (117)
382 2l9w_A U4/U6 snRNA-associated- 97.7 0.00015 5.2E-09 61.2 8.5 70 354-428 21-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 97.4 0.0011 3.7E-08 55.3 10.4 88 255-367 7-99 (104)
384 1wey_A Calcipressin 1; structu 97.0 0.0016 5.6E-08 54.3 7.0 75 353-432 4-84 (104)
385 2dhx_A Poly (ADP-ribose) polym 96.5 0.023 8E-07 47.3 10.5 70 353-428 7-80 (104)
386 1wey_A Calcipressin 1; structu 96.4 0.012 4.1E-07 49.1 8.1 72 256-332 5-82 (104)
387 1uw4_A UPF3X; nonsense mediate 96.2 0.019 6.4E-07 46.8 8.4 74 355-429 2-85 (91)
388 1wwh_A Nucleoporin 35, nucleop 95.9 0.052 1.8E-06 46.3 9.9 71 353-429 23-94 (119)
389 1wwh_A Nucleoporin 35, nucleop 95.8 0.029 1E-06 47.9 7.9 71 255-331 23-94 (119)
390 1uw4_A UPF3X; nonsense mediate 95.3 0.076 2.6E-06 43.2 8.4 65 257-322 2-71 (91)
391 1whv_A Poly(A)-specific ribonu 94.7 0.073 2.5E-06 43.9 6.6 53 255-315 15-67 (100)
392 1whv_A Poly(A)-specific ribonu 94.6 0.058 2E-06 44.4 6.0 52 354-413 16-67 (100)
393 3pq1_A Poly(A) RNA polymerase; 93.7 0.017 6E-07 60.1 1.4 64 250-318 47-110 (464)
394 3ctr_A Poly(A)-specific ribonu 93.6 0.089 3E-06 43.4 5.0 53 355-415 7-60 (101)
395 3ctr_A Poly(A)-specific ribonu 93.3 0.13 4.5E-06 42.5 5.6 51 257-315 7-57 (101)
396 2l08_A Regulator of nonsense t 93.1 0.13 4.5E-06 42.3 5.4 75 354-429 9-93 (97)
397 3p3d_A Nucleoporin 53; structu 92.3 0.15 5.1E-06 44.2 4.9 73 257-331 8-96 (132)
398 3p3d_A Nucleoporin 53; structu 92.2 0.16 5.5E-06 44.0 5.0 74 355-430 8-97 (132)
399 3pq1_A Poly(A) RNA polymerase; 91.3 0.082 2.8E-06 55.1 2.6 64 350-418 49-112 (464)
400 2l08_A Regulator of nonsense t 88.4 0.37 1.3E-05 39.6 3.7 65 256-321 9-78 (97)
401 3d45_A Poly(A)-specific ribonu 63.7 15 0.00051 38.4 7.7 54 354-415 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 61.0 16 0.00056 38.1 7.4 54 256-317 440-494 (507)
403 2g0c_A ATP-dependent RNA helic 24.4 1.8E+02 0.0062 21.3 6.2 66 258-331 2-74 (76)
404 4e8u_A Putative uncharacterize 21.6 2.2E+02 0.0077 25.3 7.0 59 258-317 14-83 (172)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=5.7e-32 Score=254.52 Aligned_cols=164 Identities=25% Similarity=0.394 Sum_probs=147.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
.+.+||||+|||+++|+++|+++|++||.|.+|+|++|+. .++|||||+|.+. ++|.+|+. +++..+.|+.|++.+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~-~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP-ADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH-HHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCH-HHHHHHHHHhhhhhcCCccccccc
Confidence 3568999999999999999999999999999999998874 4789999999999 99999998 999999999999988
Q ss_pred CCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHH
Q 013446 331 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIA 410 (443)
Q Consensus 331 S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~ 410 (443)
+... .........+|||+|||+.+|+++|+++|++ ||.|..++|+.|.+.++|||||+|.+.++|.+
T Consensus 92 ~~~~------------~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~ 158 (213)
T 4f02_A 92 SQRD------------PSLRKSGVGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDENGSKGYGFVHFETQEAAER 158 (213)
T ss_dssp CCCC------------THHHHHCTTEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEETTEEEEEEEEEESSHHHHHH
T ss_pred cccc------------ccccccccccceECCcccccHHHHHHHHHhh-cCCeEEEEeeccCCCCceEEEEEeCCHHHHHH
Confidence 7421 1222334578999999999999999999999 99999999999887789999999999999999
Q ss_pred HHh-hCCceeCCeeeEEeecCC
Q 013446 411 ALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 411 Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
|++ |||..|+|++|+|.||++
T Consensus 159 Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 159 AIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp HHHHHTTCEETTEECEEEECCC
T ss_pred HHHHhCCCEECCEEEEEEEcCC
Confidence 999 999999999999999864
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.8e-31 Score=236.11 Aligned_cols=161 Identities=21% Similarity=0.338 Sum_probs=146.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCCC
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKTA 334 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~-~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~~ 334 (443)
++|||+|||.++|+++|.++|++||.|.+++++.++. .++|||||+|.+. ++|.+|+. ++|..+.|++|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~-~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQS-HDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSH-HHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCH-HHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999998874 5789999999999 99999996 9999999999999987432
Q ss_pred cCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHH
Q 013446 335 IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAAL 412 (443)
Q Consensus 335 ~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al 412 (443)
. ........+|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+
T Consensus 80 ~------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 146 (166)
T 3md3_A 80 Q------------QSSSDDTFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 146 (166)
T ss_dssp C------------CCCCTTCEEEEEESCCTTCCHHHHHHHHTT-STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHH
T ss_pred C------------CCCCCCCceEEECCCCCCCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 1 112334689999999999999999999999 9999999998874 789999999999999999999
Q ss_pred h-hCCceeCCeeeEEeecCC
Q 013446 413 N-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 413 ~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
. |||..++|++|+|+||++
T Consensus 147 ~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 147 DSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHTTCEETTEECEEEESCC
T ss_pred HHhCCCccCCcEEEEEecCC
Confidence 9 999999999999999874
No 3
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=1.1e-31 Score=249.86 Aligned_cols=179 Identities=24% Similarity=0.312 Sum_probs=150.4
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
....++|||+|||.++|+++|+++|+.||.|.+|+++.++. .++|||||+|.+. ++|.+|++ |+|..+.|++|.|.
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~A~~~l~~~~~~g~~l~v~ 103 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP-EAAQLALEQMNSVMLGGRNIKVG 103 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSH-HHHHHHHHHHSSCCCC-CCCEEE
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCH-HHHHHHHHHccCCeeCCeeEEEe
Confidence 34569999999999999999999999999999999998763 4799999999999 99999999 99999999999998
Q ss_pred CCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHH
Q 013446 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAES 407 (443)
Q Consensus 330 ~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~ 407 (443)
++......... ...........++|||+|||..+|+++|+++|++ ||.|..++++.+. +.++|||||+|.+.++
T Consensus 104 ~~~~~~~~~~~---~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 179 (216)
T 2qfj_A 104 RPSNIGQAQPI---IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEA-FGKIKSATLARDPTTGKHKGYGFIEYEKAQS 179 (216)
T ss_dssp CCSCCGGGHHH---HHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTT-SSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred cCCCccccchh---hhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcCceEEEEecCHHH
Confidence 87432100000 0000112345689999999999999999999999 9999999999875 6889999999999999
Q ss_pred HHHHHh-hCCceeCCeeeEEeecCCCCCCC
Q 013446 408 AIAALN-CSGVVLGSLPIRVSPSKTPVRPR 436 (443)
Q Consensus 408 A~~Al~-lnG~~l~Gr~L~V~~Ak~~~~~~ 436 (443)
|.+|+. |||..|+|+.|+|.|++++..+.
T Consensus 180 A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 180 SQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHHHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HHHHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 999999 99999999999999998764443
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1.1e-30 Score=239.45 Aligned_cols=176 Identities=18% Similarity=0.260 Sum_probs=146.8
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHHhcccccCCcceeec
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVL 329 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~ 329 (443)
.+...++|||+|||+++|+++|+++|+.||.|.+|+++.++. .++|||||+|.+. ++|.+|+.+++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~A~~~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAMNARPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH-HHHHHHHHTCSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCH-HHHHHHHhcCCCEECCEEeeee
Confidence 344679999999999999999999999999999999998874 4689999999999 9999999999999999999999
Q ss_pred CCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHH
Q 013446 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAES 407 (443)
Q Consensus 330 ~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~ 407 (443)
++....... ........++|||+|||..+|+++|+++|++ ||.|..++++.+. +.++|||||+|.+.++
T Consensus 88 ~~~~~~~~~--------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~ 158 (196)
T 1l3k_A 88 RAVSREDSQ--------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ-YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS 158 (196)
T ss_dssp ECCC-------------------CCSEEEEECCTTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred cccCccccc--------ccccCCCcceEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEeecCCCCCccceEEEEECCHHH
Confidence 875322111 1112234589999999999999999999999 9999999999875 6899999999999999
Q ss_pred HHHHHhhCCceeCCeeeEEeecCCCCCCCC
Q 013446 408 AIAALNCSGVVLGSLPIRVSPSKTPVRPRA 437 (443)
Q Consensus 408 A~~Al~lnG~~l~Gr~L~V~~Ak~~~~~~~ 437 (443)
|.+|+..+|..++|+.|.|.||.+......
T Consensus 159 A~~A~~~~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 159 VDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHHHHHCSCCEETTEECEEEECC-------
T ss_pred HHHHHHhCCcEECCEEEEEEecCChhHhcc
Confidence 999999779999999999999986544433
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=4.7e-30 Score=228.34 Aligned_cols=158 Identities=23% Similarity=0.427 Sum_probs=143.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 256 ~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
.++|||+|||+++|+++|+++|+.||.|.+++++.++ +.++|||||+|.+. ++|.+|++ ++|..+.|++|.|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~-~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP-KDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSH-HHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCH-HHHHHHHHHcCCCccCCceEEEEecC
Confidence 5899999999999999999999999999999999876 34689999999999 99999998 99999999999999884
Q ss_pred CCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHH
Q 013446 333 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIA 410 (443)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~ 410 (443)
.. .......+|+|+|||..+|+++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.+
T Consensus 81 ~~--------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ 145 (167)
T 1fxl_A 81 PS--------------SASIRDANLYVSGLPKTMTQKELEQLFSQ-YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 145 (167)
T ss_dssp CC--------------CGGGTTCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CC--------------cccCCCCcEEECCCCCcCCHHHHHHHHHh-cCCEeEEEEEecCCCCCccceEEEEeCCHHHHHH
Confidence 21 11234578999999999999999999999 9999999998875 6789999999999999999
Q ss_pred HHh-hCCceeCCe--eeEEeec
Q 013446 411 ALN-CSGVVLGSL--PIRVSPS 429 (443)
Q Consensus 411 Al~-lnG~~l~Gr--~L~V~~A 429 (443)
|+. |||..++|+ +|+|+||
T Consensus 146 A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 146 AIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCccCCCccceEEEeC
Confidence 999 999999996 4999886
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=3.1e-30 Score=230.45 Aligned_cols=159 Identities=24% Similarity=0.406 Sum_probs=144.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
+.++|||+|||+++|+++|+++|+.||.|.+|+++.++. .++|||||+|.+. ++|.+|++ ++|..+.|++|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSE-MDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSH-HHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCH-HHHHHHHHhcCCCEeCCcEEEEEec
Confidence 458999999999999999999999999999999998764 3689999999999 99999998 9999999999999998
Q ss_pred CCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHH
Q 013446 332 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAI 409 (443)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~ 409 (443)
.... .....++|+|+|||..+|+++|+++|++ ||.|..++++++. +.++|||||+|.+.++|.
T Consensus 81 ~~~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 145 (168)
T 1b7f_A 81 RPGG--------------ESIKDTNLYVTNLPRTITDDQLDTIFGK-YGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 145 (168)
T ss_dssp CCCS--------------STTTTCEEEEESCCTTCCHHHHHHHHTS-SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCCc--------------ccCCCCCEEEeCCCCCCCHHHHHHhhhc-CCcEEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 5221 1234579999999999999999999999 9999999998875 688999999999999999
Q ss_pred HHHh-hCCceeCC--eeeEEeec
Q 013446 410 AALN-CSGVVLGS--LPIRVSPS 429 (443)
Q Consensus 410 ~Al~-lnG~~l~G--r~L~V~~A 429 (443)
+|+. |||..+.| ++|+|+||
T Consensus 146 ~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 146 EAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCEecCCCeEEEEEeC
Confidence 9999 99999988 99999986
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.7e-30 Score=232.25 Aligned_cols=161 Identities=17% Similarity=0.266 Sum_probs=144.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~ 332 (443)
+.++|||+|||+++|+++|+++|+.||.|.+|+++.++ +.++|||||+|.+. ++|.+|+. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~-~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKP-SSVDEVVK-TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESST-HHHHHHHH-SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccH-HHHHHHHh-cccccCCeEccccccc
Confidence 46899999999999999999999999999999999886 45799999999999 99999999 3678999999988763
Q ss_pred CCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHH
Q 013446 333 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIA 410 (443)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~ 410 (443)
. .......++|||+|||..+|+++|+++|++ ||.|.+++++.+. +.++|||||+|.+.++|.+
T Consensus 80 ~--------------~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 144 (167)
T 2cjk_A 80 P--------------RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQ-WGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDR 144 (167)
T ss_dssp C--------------HHHHHHCEEEEEEEECTTCCHHHHHHHHHT-TSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHH
T ss_pred c--------------hhhccCCCeEEECCCCCCCCHHHHHHHHHh-CccEEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 1 122345679999999999999999999999 9999999998875 7899999999999999999
Q ss_pred HHhhCCceeCCeeeEEeecCCC
Q 013446 411 ALNCSGVVLGSLPIRVSPSKTP 432 (443)
Q Consensus 411 Al~lnG~~l~Gr~L~V~~Ak~~ 432 (443)
|++++|..++|++|+|.||+|.
T Consensus 145 A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 145 VCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHCSEECSSSSCEEEEECCCC
T ss_pred HHhCCCEEeCCeEEEEeecCCC
Confidence 9999999999999999999863
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=8.7e-30 Score=228.69 Aligned_cols=161 Identities=23% Similarity=0.332 Sum_probs=141.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC----CCceEEEEEEcChHHHHHHHHH-hcccccC---Ccce
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN----SVLRFAFIEFTDEAEGARAALN-LAGTMLG---FYPV 326 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~----~skG~aFVeF~t~~e~A~~Al~-lng~~l~---Gr~I 326 (443)
+.++|||+|||+++|+++|+++|++||.|.+|++++++. .++|||||+|.+. ++|.+|++ |+|..+. ++++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~-~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTR-KAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSH-HHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCH-HHHHHHHHHhcCcEEccCCccce
Confidence 468999999999999999999999999999999998774 3689999999999 99999998 9997765 5777
Q ss_pred eecCCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCH
Q 013446 327 RVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMA 405 (443)
Q Consensus 327 ~V~~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~ 405 (443)
.+.++... .......++|||+|||..+|+++|+++|++ ||.|.+++++++. +.++|||||+|.+.
T Consensus 81 ~~~~~~~~-------------~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~~~~~~~g~~~g~afV~f~~~ 146 (175)
T 3nmr_A 81 QMKPADSE-------------KNNAVEDRKLFIGMISKKCTENDIRVMFSS-FGQIEECRILRGPDGLSRGCAFVTFTTR 146 (175)
T ss_dssp EEEECGGG-------------CCSCGGGSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred EEcccccc-------------ccccCCCCeEEEcCCCCcCCHHHHHHHHHh-CCCEEEEEEEECCCCCEEEEEEEEECCH
Confidence 77765321 112235679999999999999999999999 9999999999876 78899999999999
Q ss_pred HHHHHHHh-hCCceeC---CeeeEEeecC
Q 013446 406 ESAIAALN-CSGVVLG---SLPIRVSPSK 430 (443)
Q Consensus 406 e~A~~Al~-lnG~~l~---Gr~L~V~~Ak 430 (443)
++|.+|+. |||..+. |++|+|.||+
T Consensus 147 ~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 147 AMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999998 9998776 4999999985
No 9
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.7e-29 Score=246.14 Aligned_cols=166 Identities=17% Similarity=0.190 Sum_probs=148.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
..++|||+|||+.+|+++|.++|+.||.|.+++++.++. .++|||||+|.+. ++|.+|+. |+|..++|++|.|.++
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKK-DSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH-HHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCH-HHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 458999999999999999999999999999999988763 4689999999999 99999997 9999999999999998
Q ss_pred CCCcCCCCCCCCCCCcccccccceeeeeeCCCCCC-CHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHH
Q 013446 332 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKV-TQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAI 409 (443)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~-TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~ 409 (443)
..... .......++|||+|||..+ |+++|+++|++ ||.|..++|+.+. +.++|||||+|.+.++|.
T Consensus 173 ~~~~~-----------~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~ 240 (284)
T 3smz_A 173 DAGQL-----------TPALLHSRCLCVDRLPPGFNDVDALCRALSA-VHSPTFCQLACGQDGQLKGFAVLEYETAEMAE 240 (284)
T ss_dssp CGGGC-----------CTTTTSCSEEEEECCCTTCCCHHHHHHHTCS-SSCCSEEEEEECSSCCEEEEEEEECSSHHHHH
T ss_pred CCCCC-----------CcccCCccEEEEecCCcccCCHHHHHHHhhC-CCCeEEEEEEECCCCCcccEEEEEeCCHHHHH
Confidence 53321 1122356899999999995 99999999999 9999999998876 788999999999999999
Q ss_pred HHHh-hCCceeCCeeeEEeecCCCC
Q 013446 410 AALN-CSGVVLGSLPIRVSPSKTPV 433 (443)
Q Consensus 410 ~Al~-lnG~~l~Gr~L~V~~Ak~~~ 433 (443)
+|+. |||..++|++|+|.|+++..
T Consensus 241 ~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 241 EAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp HHHHHHTTCEETTEECEEEECCSSS
T ss_pred HHHHHhCCCccCCeEEEEEEecCCC
Confidence 9999 99999999999999998653
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=2.5e-29 Score=227.09 Aligned_cols=163 Identities=17% Similarity=0.249 Sum_probs=139.3
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEec-CCCCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecC
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-DPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~-dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~ 330 (443)
.+...++|||+|||+++|+++|+++|..||.+..+.+.. ..+.++|||||+|.+. ++|.+|++|+|..+.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~-~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESA-EDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSH-HHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCH-HHHHHHHhcCCCEeCCeEEEEec
Confidence 345679999999999999999999999998765522221 1245789999999999 99999999999999999999999
Q ss_pred CCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHH
Q 013446 331 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIA 410 (443)
Q Consensus 331 S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~ 410 (443)
+.... .......++|||+|||..+|+++|+++|++ ||.|..+ ...+.++|||||+|.+.++|.+
T Consensus 88 ~~~~~------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~g~v~~~---~~~~~~~g~afV~f~~~~~A~~ 151 (175)
T 1fje_B 88 PKGRD------------SKKVRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV---SQDGKSKGIAYIEFKSEADAEK 151 (175)
T ss_dssp CCCSS------------CSTTGGGGEEEEESCCSSCCHHHHHHHCTT-CSEEEEE---CSSSSCCSEEEEECSSHHHHHH
T ss_pred CCCcc------------ccccccCCEEEEeCCCCCCCHHHHHHHHHh-cCeEEEe---cCCCCCceEEEEEECCHHHHHH
Confidence 85321 112335689999999999999999999999 9988876 4447899999999999999999
Q ss_pred HHh-hCCceeCCeeeEEeecCC
Q 013446 411 ALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 411 Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
|+. |||..++|++|+|+||++
T Consensus 152 A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 152 NLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp HHHHHTEEEETTEEEEEEECSS
T ss_pred HHHHhCCCEECCeEEEEEecCC
Confidence 999 999999999999999975
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=1.3e-28 Score=221.01 Aligned_cols=156 Identities=23% Similarity=0.346 Sum_probs=140.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGC----G-------QVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGF 323 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~----G-------~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~G 323 (443)
+.++|||+|||+++|+++|+++|++| | .|.++.+..+ +|||||+|.+. ++|.+|+.++|..+.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~----~g~afV~f~~~-~~A~~A~~~~~~~~~g 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSV-DETTQAMAFDGIIFQG 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT----TTEEEEEESSH-HHHHHHGGGTTCEETT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC----CCEEEEEeCCH-HHHHHHHHhCCcEecC
Confidence 46899999999999999999999999 7 7788877654 58999999999 9999999999999999
Q ss_pred cceeecCCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEE
Q 013446 324 YPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVE 401 (443)
Q Consensus 324 r~I~V~~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVe 401 (443)
++|.|.++..... ....++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+
T Consensus 78 ~~i~v~~~~~~~~--------------~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~ 142 (172)
T 2g4b_A 78 QSLKIRRPHDYQP--------------LPGAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDSATGLSKGYAFCE 142 (172)
T ss_dssp EECEEECCSSCCC--------------CTTTTCEEEECCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTTCSEEEEEEEE
T ss_pred ceeeecCCcccCC--------------CCCCCEEEEEcCCCcCCHHHHHHHHHh-cCCceEEEEEecCCCCCcceEEEEE
Confidence 9999998743211 123689999999999999999999999 9999999999884 7889999999
Q ss_pred eCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 402 FVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 402 F~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
|.+.++|.+|+. |||..++|++|+|+||.
T Consensus 143 f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 143 YVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp ESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999 99999999999999973
No 12
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=3.2e-29 Score=245.09 Aligned_cols=235 Identities=20% Similarity=0.252 Sum_probs=172.6
Q ss_pred CcchhhHHHHHHHHhccCCccccccCCccCccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCcchhccccCCCCCCC
Q 013446 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSFGQGK 239 (443)
Q Consensus 160 ~~~~~~~~eL~elfs~~gpla~~~~PP~~~~a~~~~~~~~~~~gg~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~f~~g~ 239 (443)
+|+..+.++|.++|++||++..+.++....... .+++..+. .+ ........ .+.
T Consensus 49 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~--g~afV~f~-----~~-------------~~A~~A~~-~~~----- 102 (292)
T 2ghp_A 49 LPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNF--RFARIEFA-----RY-------------DGALAAIT-KTH----- 102 (292)
T ss_dssp ECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSS--EEEEEEES-----SH-------------HHHHHHHT-TTT-----
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCc--EEEEEEEC-----CH-------------HHHHHHHH-hCC-----
Confidence 888899999999999999999887765432110 01111110 00 00000000 000
Q ss_pred CCCCCCccccccccCCCcEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH-h
Q 013446 240 RRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN-L 316 (443)
Q Consensus 240 ~r~~~~~~~~~~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G-~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-l 316 (443)
....+.... ......++|||+|||+.+|+++|.++|+.|| .|.+|++..++ +.++|||||+|.+. ++|.+|+. |
T Consensus 103 ~~~~g~~i~--v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~-~~a~~A~~~l 179 (292)
T 2ghp_A 103 KVVGQNEII--VSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSK-EDARYCVEKL 179 (292)
T ss_dssp CEETTEECE--EEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSH-HHHHHHHHHH
T ss_pred cEeCCcEEE--EEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCH-HHHHHHHHHh
Confidence 011111111 1123579999999999999999999999999 99999998876 45799999999999 99999999 9
Q ss_pred cccccCCcceeecCCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccC---C
Q 013446 317 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDY---H 392 (443)
Q Consensus 317 ng~~l~Gr~I~V~~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~-~TeedL~elF~~~fG~V~~vrI~~d~---~ 392 (443)
+|..+.|++|.|.++....... .........++|||+|||.. +|+++|+++|++ ||.|..++++.+. +
T Consensus 180 ~g~~~~g~~l~v~~a~~~~~~~-------~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~tg 251 (292)
T 2ghp_A 180 NGLKIEGYTLVTKVSNPLEKSK-------RTDSATLEGREIMIRNLSTELLDENLLRESFEG-FGSIEKINIPAGQKEHS 251 (292)
T ss_dssp TTCEETTEECEEEECCCC----------------CCTTTEEEEEEECTTTCCHHHHHHHHGG-GSCEEEEECCSCCC---
T ss_pred CCCEeCCcEEEEEECCCCcccc-------cccccCCCCceEEEECCCcccCCHHHHHHHHhc-cCCeeEEEEEecCCcCC
Confidence 9999999999999885321110 00122345689999999999 999999999999 9999999998875 6
Q ss_pred CCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecCC
Q 013446 393 HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 393 ~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak~ 431 (443)
.++|||||+|.+.++|.+|+.|||..|+|++|+|.||++
T Consensus 252 ~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 252 FNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADK 290 (292)
T ss_dssp CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCC
T ss_pred CCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEecC
Confidence 789999999999999999999999999999999999985
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=5.1e-28 Score=222.04 Aligned_cols=174 Identities=21% Similarity=0.295 Sum_probs=145.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGC----G-------QVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGF 323 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~----G-------~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~G 323 (443)
..++|||+|||+++|+++|.++|+.| | .|.++.+.. ++|||||+|.+. ++|.+|+.|+|..+.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~----~~g~afV~F~~~-~~A~~Al~l~g~~~~g 77 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSV-DETTQAMAFDGIIFQG 77 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET----TTTEEEEEESCS-HHHHHHGGGTTEEETT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC----CCCEEEEEeCCH-HHHHHHHHhcCCEEcC
Confidence 46899999999999999999999999 5 677776653 468999999999 9999999999999999
Q ss_pred cceeecCCCCCcCCCCCCCC-----C-CCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCc
Q 013446 324 YPVRVLPSKTAIAPVNPTFL-----P-RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHST 395 (443)
Q Consensus 324 r~I~V~~S~~~~~p~~~~~~-----~-~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~sr 395 (443)
++|.|.++.....+...... + ..........++|||+|||..+|+++|+++|++ ||.|..++++.+. +.++
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHT-BSCEEEEEEEECTTTCSEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccEEEEeecCCCCCcc
Confidence 99999988654222111000 0 011112345689999999999999999999999 9999999999874 7889
Q ss_pred eEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCCCCC
Q 013446 396 RIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVR 434 (443)
Q Consensus 396 GfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~~~~ 434 (443)
|||||+|.+.++|.+|+. |||..++|+.|+|+|+++...
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999 999999999999999987643
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=4e-28 Score=228.48 Aligned_cols=170 Identities=14% Similarity=0.146 Sum_probs=140.8
Q ss_pred CCcEEEEcCCC-CCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 255 IRRTVYVSDID-QQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 255 ~~~tLfVgNLp-~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
+.++|||+||| +.+|+++|.++|++||.|.+|++++++ +|||||+|.+. ++|++|++ |||..+.|++|.|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~-~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---PGAAMVEMADG-YAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---TTCEEEEESSH-HHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---CCEEEEEECCH-HHHHHHHHHhCCCEECCceEEEEEcc
Confidence 46899999999 899999999999999999999998764 69999999999 99999998 99999999999999986
Q ss_pred CCcC-CCCCCCCC---------------CCcc-------cccccceeeeeeCCCCCCCHHHHHHHhhhcCCce--EEEEE
Q 013446 333 TAIA-PVNPTFLP---------------RTED-------EREMCARTIYCTNIDKKVTQADVKLFFESVCGEV--YRLRL 387 (443)
Q Consensus 333 ~~~~-p~~~~~~~---------------~~~~-------~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V--~~vrI 387 (443)
.... +..+...+ +... ....++++|||+|||+.+|+++|+++|++ ||.| ..+++
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~-~G~v~~~~v~~ 157 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE-LGVKRPTSVKV 157 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHH-HTCCCCSEEEE
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEE
Confidence 4321 11100000 0000 01134578999999999999999999999 9999 89999
Q ss_pred eccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCe----eeEEeec
Q 013446 388 LGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSL----PIRVSPS 429 (443)
Q Consensus 388 ~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr----~L~V~~A 429 (443)
+.+.+..+|||||+|.+.++|.+|+. |||..|.|. ++.|.+|
T Consensus 158 ~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 88776667999999999999999999 999999987 5666654
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=1.1e-27 Score=227.51 Aligned_cols=173 Identities=26% Similarity=0.325 Sum_probs=145.1
Q ss_pred cCCCcEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~-~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
..+.++|||+|||+ ++|+++|+++|+.||.|.+|+++.++ +|||||+|.+. ++|.+|++ |+|..+.|++|.|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~-~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADG-NQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCH-HHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCH-HHHHHHHHHhCCCeECCeEEEEEE
Confidence 34679999999999 99999999999999999999999876 68999999999 99999998 999999999999998
Q ss_pred CCCCcCCCCCC------------------CC-CC--CcccccccceeeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEe
Q 013446 331 SKTAIAPVNPT------------------FL-PR--TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLL 388 (443)
Q Consensus 331 S~~~~~p~~~~------------------~~-~~--~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG-~V~~vrI~ 388 (443)
++......... .. +. .........++|||+|||..+|+++|+++|++ || .|..+++.
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~ 185 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKFF 185 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHT-TSCCEEEEEEC
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHH-cCCCeeEEEEE
Confidence 86431110000 00 00 00011234689999999999999999999999 99 99999995
Q ss_pred ccCCCCceEEEEEeCCHHHHHHHHh-hCCceeC-CeeeEEeecCCCC
Q 013446 389 GDYHHSTRIAFVEFVMAESAIAALN-CSGVVLG-SLPIRVSPSKTPV 433 (443)
Q Consensus 389 ~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~-Gr~L~V~~Ak~~~ 433 (443)
.+ .+|||||+|.+.++|.+|+. |||..++ |++|+|+|+++++
T Consensus 186 ~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~i 229 (229)
T 2adc_A 186 QK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 229 (229)
T ss_dssp SS---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSCC
T ss_pred EC---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCCC
Confidence 53 37899999999999999999 9999999 9999999999764
No 16
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=5.6e-28 Score=236.24 Aligned_cols=160 Identities=20% Similarity=0.301 Sum_probs=141.0
Q ss_pred cccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecC
Q 013446 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330 (443)
Q Consensus 251 ~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~ 330 (443)
..+...++|||+|||+++|+++|.++|+.||.|.+|+++.++..++|||||+|.+. ++|.+|++++|..+.|++|.|.+
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~-~~A~~A~~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARY-DGALAAITKTHKVVGQNEIIVSH 114 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSH-HHHHHHHTTTTCEETTEECEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCH-HHHHHHHHhCCcEeCCcEEEEEE
Confidence 34567899999999999999999999999999999999998877899999999999 99999999999999999999987
Q ss_pred CCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccC-CCCceEEEEEeCCHHHH
Q 013446 331 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDY-HHSTRIAFVEFVMAESA 408 (443)
Q Consensus 331 S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG-~V~~vrI~~d~-~~srGfAFVeF~t~e~A 408 (443)
+. .++|||+|||..+|+++|+++|++ || .|..++++.+. +.++|||||+|.+.++|
T Consensus 115 ~~---------------------~~~l~v~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a 172 (292)
T 2ghp_A 115 LT---------------------ECTLWMTNFPPSYTQRNIRDLLQD-INVVALSIRLPSLRFNTSRRFAYIDVTSKEDA 172 (292)
T ss_dssp CC---------------------SCEEEEECCCTTCCHHHHHHHHHH-TTCCCCEEECC-------CCEEEEECSSHHHH
T ss_pred CC---------------------CCEEEEECCCCCCCHHHHHHHHHH-hCCCeEEEEEEeCCCCCcceEEEEEECCHHHH
Confidence 62 479999999999999999999999 99 99999998876 67899999999999999
Q ss_pred HHHHh-hCCceeCCeeeEEeecCCCC
Q 013446 409 IAALN-CSGVVLGSLPIRVSPSKTPV 433 (443)
Q Consensus 409 ~~Al~-lnG~~l~Gr~L~V~~Ak~~~ 433 (443)
.+|+. |+|..++|+.|.|.|+.+..
T Consensus 173 ~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 173 RYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp HHHHHHHTTCEETTEECEEEECCCC-
T ss_pred HHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 99999 99999999999999998653
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=6.2e-28 Score=222.69 Aligned_cols=171 Identities=26% Similarity=0.339 Sum_probs=143.8
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 255 IRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 255 ~~~tLfVgNLp~-~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
.+++|||+|||+ ++|+++|+++|+.||.|.+|+++.++ +|||||+|.+. ++|.+|+. |+|..+.|++|.|.+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~-~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADG-NQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTT-HHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCH-HHHHHHHHHhCCCeecCeEEEEEEec
Confidence 358999999999 99999999999999999999999876 68999999999 99999998 99999999999999875
Q ss_pred CCcCCCCCC------------------CC-C--CCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEecc
Q 013446 333 TAIAPVNPT------------------FL-P--RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGD 390 (443)
Q Consensus 333 ~~~~p~~~~------------------~~-~--~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG-~V~~vrI~~d 390 (443)
......... +. + .........+++|||+|||..+|+++|+++|++ || .|..+++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKFFQK 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHH-TTSCCCEEEESST
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHH-cCCCceEEEEEeC
Confidence 431111000 00 0 000011234789999999999999999999999 99 9999999654
Q ss_pred CCCCceEEEEEeCCHHHHHHHHh-hCCceeC-CeeeEEeecCCCC
Q 013446 391 YHHSTRIAFVEFVMAESAIAALN-CSGVVLG-SLPIRVSPSKTPV 433 (443)
Q Consensus 391 ~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~-Gr~L~V~~Ak~~~ 433 (443)
.+|||||+|.+.++|.+|+. |||..++ |++|+|.|+++++
T Consensus 157 ---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~i 198 (198)
T 1qm9_A 157 ---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 198 (198)
T ss_dssp ---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCCC
T ss_pred ---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecccC
Confidence 37999999999999999999 9999999 9999999999764
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=2.2e-27 Score=230.84 Aligned_cols=173 Identities=23% Similarity=0.341 Sum_probs=143.5
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcce
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLA----ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPV 326 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~----e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I 326 (443)
+..+.++|||+|||+++|+++|+ ++|+.||.|.+|++.+ .+.++|||||+|.+. ++|.+|++ |+|..+.|++|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEV-SSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCH-HHHHHHHHHhcCCeeCCcEE
Confidence 34567999999999999999966 8999999999999886 345789999999999 99999997 99999999999
Q ss_pred eecCCCCCcCCCC---CCC-------------------------------------------------------------
Q 013446 327 RVLPSKTAIAPVN---PTF------------------------------------------------------------- 342 (443)
Q Consensus 327 ~V~~S~~~~~p~~---~~~------------------------------------------------------------- 342 (443)
+|.+++....... ...
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 9998754321000 000
Q ss_pred -------------CC--------------------CCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEec
Q 013446 343 -------------LP--------------------RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG 389 (443)
Q Consensus 343 -------------~~--------------------~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~ 389 (443)
.+ ..........++|||+|||..+|+++|+++|++ ||.|.+++++.
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~i~~v~~~~ 241 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQ-FPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHh-cCCeEEEEEec
Confidence 00 000012234688999999999999999999999 99999999986
Q ss_pred cCCCCceEEEEEeCCHHHHHHHHh-hCCceeC-CeeeEEeecC
Q 013446 390 DYHHSTRIAFVEFVMAESAIAALN-CSGVVLG-SLPIRVSPSK 430 (443)
Q Consensus 390 d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~-Gr~L~V~~Ak 430 (443)
+. +|||||+|.+.++|.+|+. |||..++ |++|+|+||+
T Consensus 242 ~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 242 GR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 54 6899999999999999999 9999999 9999999987
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=1.2e-26 Score=225.89 Aligned_cols=154 Identities=20% Similarity=0.233 Sum_probs=141.2
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
....++|||+|||+++|+++|.++|+.|| |.+|.+ +.++|||||+|.+. ++|.+|+. ++|..+.|++|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~----~~~~g~afV~f~~~-~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV----DKYKGTAFVTLLNG-EQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE----ETTTTEEEEEESSH-HHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE----ecCCCEEEEEeCCH-HHHHHHHHHcCCCeeCCeEEEEEec
Confidence 34679999999999999999999999999 999988 34568999999999 99999998 9999999999999986
Q ss_pred CCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHH
Q 013446 332 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAI 409 (443)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~ 409 (443)
. ..++|||+|||..+|+++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.
T Consensus 93 ~--------------------~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 151 (284)
T 3smz_A 93 P--------------------TDALLCVANLPPSLTQQQFEELVRP-FGSLERCFLVYSERTGQSKGYGFAEYMKKDSAA 151 (284)
T ss_dssp C--------------------CSCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred C--------------------CCCEEEEcCCCCcCCHHHHHHHHHh-cCCeeEEEEEeeCCCCccceEEEEEECCHHHHH
Confidence 2 2369999999999999999999999 9999999998775 789999999999999999
Q ss_pred HHHh-hCCceeCCeeeEEeecCCCC
Q 013446 410 AALN-CSGVVLGSLPIRVSPSKTPV 433 (443)
Q Consensus 410 ~Al~-lnG~~l~Gr~L~V~~Ak~~~ 433 (443)
+|+. |+|..++|+.|.|.|+++..
T Consensus 152 ~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 152 RAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp HHHHHHTTCEETTEECEEEECCGGG
T ss_pred HHHHHhCCCEeCCcEEEEEECCCCC
Confidence 9998 99999999999999997653
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=3.5e-26 Score=221.60 Aligned_cols=154 Identities=27% Similarity=0.365 Sum_probs=140.2
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
....++|||+|||+++|+++|.++|+.||.|.+|.+.++ +|||||+|.+. ++|.+|+. ++|..+.|++|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~-~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD----RGFGFIRLESR-TLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT----TTEEEEECSSH-HHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CcEEEEEECCH-HHHHHHHHHcCCcEECCceeEeeec
Confidence 346689999999999999999999999999999999754 58999999999 99999998 9999999999999988
Q ss_pred CCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHH
Q 013446 332 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIA 410 (443)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~ 410 (443)
. ...+|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+
T Consensus 94 ~--------------------~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 152 (261)
T 3sde_A 94 T--------------------HGAALTVKNLSPVVSNELLEQAFSQ-FGPVEKAVVVVDDRGRATGKGFVEFAAKPPARK 152 (261)
T ss_dssp C--------------------CSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEETTSCEEEEEEEEESSHHHHHH
T ss_pred c--------------------cCCcccccCCCCCCCHHHHHHHHHh-cCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHH
Confidence 4 1368999999999999999999999 9999999998886 7899999999999999999
Q ss_pred HHh-h-CCceeC---CeeeEEeecCCC
Q 013446 411 ALN-C-SGVVLG---SLPIRVSPSKTP 432 (443)
Q Consensus 411 Al~-l-nG~~l~---Gr~L~V~~Ak~~ 432 (443)
|+. | ++..+. +++|.|.++++.
T Consensus 153 A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 153 ALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHhcCCeEEecCCCceEEEeecccc
Confidence 999 8 556665 999999998753
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=3.1e-21 Score=172.57 Aligned_cols=145 Identities=15% Similarity=0.118 Sum_probs=110.0
Q ss_pred EEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCCCcCCCCCCCCCCCcccccccceeeeeeCCC
Q 013446 285 DCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNID 363 (443)
Q Consensus 285 ~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp 363 (443)
.+++..+..+++|||||+|.+. ++|++|+. +++.......+.+............. ............++|||+|||
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~-~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDA-ATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS-HHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSH-HHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC-CCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCccccchhHHHHHHH-HhHHHHHHhhcccCCCCCcccccCccccccccccc-cccccccCCCCCCEEEEeCCC
Confidence 4667777778899999999999 99999997 66543322222222111100000000 001112223456899999999
Q ss_pred CCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCCC
Q 013446 364 KKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 432 (443)
Q Consensus 364 ~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~~ 432 (443)
+.+|+++|+++|++ ||.|..++|+.|. +.++|||||+|.+.++|.+|+. |||..++|++|+|+||++.
T Consensus 80 ~~~~~~~l~~~F~~-~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 80 YRTSPDTLRRVFEK-YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp TTCCHHHHHHHHHH-HSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred CCCCHHHHHHHHHh-cCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 99999999999999 9999999999885 7899999999999999999999 9999999999999999876
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=2.3e-20 Score=159.39 Aligned_cols=109 Identities=20% Similarity=0.356 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKT 333 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~ 333 (443)
..++|||+|||+++|+++|+++|++||.|.+|+|+.|+++++|||||+|.+. ++|++|++ |+|..++|++|.|.+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~-~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQ-EAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCH-HHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCH-HHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4579999999999999999999999999999999999888899999999999 99999998 999999999999998753
Q ss_pred CcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHH
Q 013446 334 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 370 (443)
Q Consensus 334 ~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~Teed 370 (443)
.... ...........++|||+|||+.+|++.
T Consensus 83 ~~~~------~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKER------EAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------------
T ss_pred cccc------ccccccccCCCCceEeCCCCCCccccc
Confidence 2111 011122233456899999999999864
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=1.9e-19 Score=160.02 Aligned_cols=138 Identities=14% Similarity=0.113 Sum_probs=112.3
Q ss_pred ecCCCCCceEEEEEEcChHHHHHHHHH-h-cccccCCcceeecCCCCCcCCCCC--CCCCCCcccccccceeeeeeCCCC
Q 013446 289 CGDPNSVLRFAFIEFTDEAEGARAALN-L-AGTMLGFYPVRVLPSKTAIAPVNP--TFLPRTEDEREMCARTIYCTNIDK 364 (443)
Q Consensus 289 ~~dk~~skG~aFVeF~t~~e~A~~Al~-l-ng~~l~Gr~I~V~~S~~~~~p~~~--~~~~~~~~~~~~~~~tIfV~NLp~ 364 (443)
..+-..-+|+++|+|.+. ++|++|++ + +|..++| +|.+.++......... ..............++|||+|||+
T Consensus 6 ~l~g~~l~G~~~ve~~~~-~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~ 83 (150)
T 2i2y_A 6 ILNGKTLKGETTTEAVDA-ATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGN 83 (150)
T ss_dssp EECCSSSCEEEEEECSSH-HHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCS
T ss_pred eeccccccccceeeecCH-HHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 333344589999999999 99999998 8 9999999 9999987542111000 000111222344568999999999
Q ss_pred CCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCCC
Q 013446 365 KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 432 (443)
Q Consensus 365 ~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~~ 432 (443)
.+|+++|+++|++ ||.|.+++++.+ ++|||||+|.+.++|.+|+. |||..++|++|+|+|+++.
T Consensus 84 ~~t~~~l~~~F~~-~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 84 NGNKTELERAFGY-YGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CCSCHHHHHHHHH-HSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCHHHHHHHHHh-hCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999 999999999876 58999999999999999999 9999999999999999875
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=6e-18 Score=141.02 Aligned_cols=79 Identities=30% Similarity=0.443 Sum_probs=74.4
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
..++|||+|||+.+|+++|+++|++ ||.|.++++++|. +.++|||||+|.+.++|.+|++ |||..++|++|+|+||
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3578999999999999999999999 9999999999876 7899999999999999999999 9999999999999999
Q ss_pred CCC
Q 013446 430 KTP 432 (443)
Q Consensus 430 k~~ 432 (443)
+|.
T Consensus 97 kPS 99 (99)
T 4fxv_A 97 RPS 99 (99)
T ss_dssp CBC
T ss_pred eCC
Confidence 863
No 25
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.69 E-value=9.5e-17 Score=136.86 Aligned_cols=79 Identities=23% Similarity=0.349 Sum_probs=74.2
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
..++|||+|||+.+|+++|+++|++ ||.|.+|+|+.|.+.++|||||+|.+.++|.+|+. |+|..++|++|+|.++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~-~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhc-cCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3578999999999999999999999 99999999999987789999999999999999998 999999999999999975
Q ss_pred C
Q 013446 432 P 432 (443)
Q Consensus 432 ~ 432 (443)
.
T Consensus 83 ~ 83 (115)
T 4f25_A 83 R 83 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.69 E-value=2.5e-17 Score=135.01 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=72.0
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-h-CCceeCCeeeEEee
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-C-SGVVLGSLPIRVSP 428 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG-~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-l-nG~~l~Gr~L~V~~ 428 (443)
+++|||+|||+.+|+++|+++|++ || .|.+|+|++|. +.++|||||+|.+.++|.+|++ + ++..++|++|+|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~-~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQS-HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHH-HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 368999999999999999999999 89 89999999876 7899999999999999999998 6 56789999999999
Q ss_pred cCCC
Q 013446 429 SKTP 432 (443)
Q Consensus 429 Ak~~ 432 (443)
|++.
T Consensus 80 a~~~ 83 (91)
T 2lxi_A 80 SDPK 83 (91)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 9864
No 27
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=3.3e-17 Score=144.04 Aligned_cols=123 Identities=16% Similarity=0.157 Sum_probs=78.8
Q ss_pred eEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHh
Q 013446 297 RFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375 (443)
Q Consensus 297 G~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF 375 (443)
-+.|++|.+. ..+..|+. ++|....|+.- +.++. ........++|||+|||..+|+++|+++|
T Consensus 5 ~~~~~~~~~~-~~~~~a~~~~~g~~~~g~~~-~~~~~--------------~~~~~~~~~~l~V~nLp~~~te~~L~~~F 68 (135)
T 2lea_A 5 HHHHHHSSGL-VPRGSHMASMTGGQQMGRGS-MSYGR--------------PPPDVEGMTSLKVDNLTYRTSPDTLRRVF 68 (135)
T ss_dssp --------------------------------CCSCC--------------SCSSGGGCCCEEEECCCSSCHHHHHHHHH
T ss_pred ccccccccCC-CchhhhhhhccCCCCCCCCC-CCcCC--------------CCCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3677888888 88888888 87766555431 11211 11123346899999999999999999999
Q ss_pred hhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCCCCCCC
Q 013446 376 ESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRPR 436 (443)
Q Consensus 376 ~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~~~~~~ 436 (443)
++ ||.|..|+|+.+. +.++|||||+|.+.++|.+|+. |||..++|++|+|+|+++...+.
T Consensus 69 ~~-~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 69 EK-YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp GG-GSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred Hh-cCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 99 9999999998875 6899999999999999999999 99999999999999998764443
No 28
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-16 Score=130.11 Aligned_cols=88 Identities=20% Similarity=0.328 Sum_probs=79.2
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
..++|||+|||..+|+++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.+|+. |||..++|++|+|.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSA-YGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4689999999999999999999999 9999999998875 6899999999999999999998 9999999999999999
Q ss_pred CCCCCCCCCCCC
Q 013446 430 KTPVRPRAPRLP 441 (443)
Q Consensus 430 k~~~~~~~pr~~ 441 (443)
++......+.++
T Consensus 86 ~~~~~~~~~~~~ 97 (99)
T 1whw_A 86 TIKKEASQSGPS 97 (99)
T ss_dssp CCCSTTCCCCCC
T ss_pred CCCcccccCCCC
Confidence 877555444443
No 29
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=133.51 Aligned_cols=78 Identities=23% Similarity=0.411 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
..+++|||+|||+++|+++|+++|++||.|.+|++++|+. .++|||||+|.+. ++|.+|++ |+|..++|++|+|.+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~-~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA-KDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSH-HHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCH-HHHHHHHHHhCCCEECCEEEEEEE
Confidence 3568999999999999999999999999999999998874 4789999999999 99999998 999999999999999
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
++
T Consensus 96 Ak 97 (99)
T 4fxv_A 96 AR 97 (99)
T ss_dssp CC
T ss_pred ee
Confidence 84
No 30
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=5.7e-16 Score=131.17 Aligned_cols=85 Identities=21% Similarity=0.287 Sum_probs=77.4
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
....++|||+|||..+|+++|+++|++ ||.|..|+|+.+. +.++|||||+|.+.++|.+|++ |||..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345689999999999999999999999 9999999999874 7889999999999999999999 99999999999999
Q ss_pred ecCCCCCCC
Q 013446 428 PSKTPVRPR 436 (443)
Q Consensus 428 ~Ak~~~~~~ 436 (443)
|+++...++
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 998654443
No 31
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.9e-16 Score=128.58 Aligned_cols=82 Identities=20% Similarity=0.303 Sum_probs=76.4
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
....++|||+|||..+|+++|+++|++ ||.|..|+|+.+...++|||||+|.+.++|.+|+. |||..|+|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGG-TSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 345689999999999999999999999 99999999998876689999999999999999999 9999999999999999
Q ss_pred CCCC
Q 013446 430 KTPV 433 (443)
Q Consensus 430 k~~~ 433 (443)
++..
T Consensus 91 ~~~~ 94 (103)
T 2cq3_A 91 TARV 94 (103)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8753
No 32
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.67 E-value=3.6e-16 Score=132.59 Aligned_cols=80 Identities=19% Similarity=0.290 Sum_probs=75.3
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
...++|||+|||..+|+++|+++|++ ||.|..|+|+.+. +.++|||||+|.+.++|.+|++ |||..|+|++|+|+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMP-FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGG-GSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45689999999999999999999999 9999999998875 6899999999999999999998 999999999999999
Q ss_pred cCCC
Q 013446 429 SKTP 432 (443)
Q Consensus 429 Ak~~ 432 (443)
+++.
T Consensus 102 a~~~ 105 (115)
T 2cpz_A 102 KRSK 105 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9876
No 33
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=130.36 Aligned_cols=82 Identities=18% Similarity=0.333 Sum_probs=76.6
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
....++|||+|||..+|+++|+++|++ ||.|..+.++.+.+.++|||||+|.+.++|.+|+. |||..+.|++|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSP-FGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTT-TSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 345789999999999999999999999 99999999998877889999999999999999999 9999999999999999
Q ss_pred CCCC
Q 013446 430 KTPV 433 (443)
Q Consensus 430 k~~~ 433 (443)
++..
T Consensus 91 ~~~~ 94 (103)
T 2d9p_A 91 QRKE 94 (103)
T ss_dssp SSCC
T ss_pred cccc
Confidence 8753
No 34
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.67 E-value=3.5e-16 Score=130.26 Aligned_cols=82 Identities=22% Similarity=0.237 Sum_probs=76.0
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCC---eeeE
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGS---LPIR 425 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~G---r~L~ 425 (443)
....++|||+|||..+|+++|+++|++ ||.|..++|+.+. +.++|||||+|.+.++|.+|++ |||..+.| ++|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQP-FGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 345789999999999999999999999 9999999999886 7889999999999999999999 99999998 9999
Q ss_pred EeecCCCC
Q 013446 426 VSPSKTPV 433 (443)
Q Consensus 426 V~~Ak~~~ 433 (443)
|.||++..
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99998763
No 35
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.6e-16 Score=129.21 Aligned_cols=82 Identities=27% Similarity=0.343 Sum_probs=76.4
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
....++|||+|||..+|+++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..++|++|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRP-FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTT-TCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 345689999999999999999999999 9999999999875 6899999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 013446 428 PSKTPV 433 (443)
Q Consensus 428 ~Ak~~~ 433 (443)
|+++..
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998763
No 36
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=131.05 Aligned_cols=100 Identities=22% Similarity=0.276 Sum_probs=82.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCCCc
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKTAI 335 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~~~ 335 (443)
++|||+|||.++|+++|+++|++||.|.+|.+..+ ++|||||+|.+. ++|.+|++ |+|..+.|++|.|.+++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDP-RDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSH-HHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCH-HHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999999987 679999999999 99999999 99999999999999986543
Q ss_pred CCCCCCCCCCCcccccccceeeeeeCCCC
Q 013446 336 APVNPTFLPRTEDEREMCARTIYCTNIDK 364 (443)
Q Consensus 336 ~p~~~~~~~~~~~~~~~~~~tIfV~NLp~ 364 (443)
.... ............+|||+||+.
T Consensus 77 ~~~~----~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 77 RRSR----FDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CSSC----CCSCCCSCCCCSCCCSCCCCC
T ss_pred Cccc----CCCCCccccCCCceecCCCCC
Confidence 2111 111112223467999999973
No 37
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.66 E-value=5.6e-17 Score=131.96 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=68.7
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCC--ceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG--~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
.+|||+|||..+|+++|+++|++ || .|.+++++.|. +.++|||||+|.+.++|.+|++ |||..++|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHT-TTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHH-hCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 58999999999999999999999 99 99999999875 7899999999999999999998 9999999999999999
Q ss_pred CCCCCCC
Q 013446 430 KTPVRPR 436 (443)
Q Consensus 430 k~~~~~~ 436 (443)
+++..++
T Consensus 81 ~~~~~~~ 87 (90)
T 3p5t_L 81 NKLEHHH 87 (90)
T ss_dssp -------
T ss_pred CCCcccc
Confidence 8764443
No 38
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1e-15 Score=127.08 Aligned_cols=83 Identities=24% Similarity=0.340 Sum_probs=76.9
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
...++|||+|||..+|+++|+++|++ ||.|..|+|+.+...++|||||+|.+.++|.+|+. |||..+.|++|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQ-IGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHH-HSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHh-cCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 45689999999999999999999999 99999999999876689999999999999999999 99999999999999998
Q ss_pred CCCCC
Q 013446 431 TPVRP 435 (443)
Q Consensus 431 ~~~~~ 435 (443)
++...
T Consensus 92 ~~~~~ 96 (103)
T 2cqi_A 92 TPSSQ 96 (103)
T ss_dssp CTTCC
T ss_pred CCccc
Confidence 75433
No 39
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.66 E-value=8.7e-17 Score=133.44 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=72.4
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCc--eEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCc----eeCCee
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGE--VYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGV----VLGSLP 423 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~--V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~----~l~Gr~ 423 (443)
...+|||+|||+.+|+++|+++|++ ||. +.+|++++|+ +.++|||||+|.+.++|.+|++ |||. .++|++
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~-~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSP-YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTT-TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHh-hCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 4579999999999999999999999 995 6789999886 7899999999999999999999 9985 599999
Q ss_pred eEEeecCCC
Q 013446 424 IRVSPSKTP 432 (443)
Q Consensus 424 L~V~~Ak~~ 432 (443)
|+|+||+.+
T Consensus 87 i~V~~Akss 95 (95)
T 2lkz_A 87 IGVDFAKSA 95 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEEccCC
Confidence 999999853
No 40
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.66 E-value=5.2e-16 Score=123.40 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=73.5
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
+.+|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+. |||..++|++|+|+|++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTT-STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 368999999999999999999999 9999999998875 7889999999999999999999 99999999999999998
Q ss_pred CC
Q 013446 431 TP 432 (443)
Q Consensus 431 ~~ 432 (443)
+.
T Consensus 80 ~~ 81 (83)
T 3md1_A 80 KL 81 (83)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 41
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.4e-16 Score=130.47 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=79.7
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
....++|||+|||..+|+++|+++|++ ||.|..|+|+.+. +.++|||||+|.+.++|.+|+. +++ .|.|++|+|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEG-FGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHT-TSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 445689999999999999999999999 9999999999875 6899999999999999999999 898 8999999999
Q ss_pred ecCCCCCCCCCCC
Q 013446 428 PSKTPVRPRAPRL 440 (443)
Q Consensus 428 ~Ak~~~~~~~pr~ 440 (443)
++++...++..++
T Consensus 92 ~a~~~~~~~~~~~ 104 (116)
T 2cqd_A 92 LAYLGAKPRSLQT 104 (116)
T ss_dssp ESTTTCCCCCCCC
T ss_pred EcccCCCccccCC
Confidence 9987766666544
No 42
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.4e-16 Score=127.52 Aligned_cols=83 Identities=20% Similarity=0.303 Sum_probs=75.7
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCC-----CCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEE
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH-----HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~-----~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V 426 (443)
..++|||+|||..+|+++|+++|++ ||.|..+.++.+.. .++|||||+|.+.++|.+|+. |||..++|++|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSK-VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4589999999999999999999999 99999999987653 789999999999999999999 9999999999999
Q ss_pred eecCCCCCCC
Q 013446 427 SPSKTPVRPR 436 (443)
Q Consensus 427 ~~Ak~~~~~~ 436 (443)
.++++...++
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998764443
No 43
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.9e-16 Score=130.46 Aligned_cols=80 Identities=20% Similarity=0.220 Sum_probs=75.2
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
...++|||+|||..+|+++|+++|++ ||.|..+.|+.+. +.++|||||+|.+.++|.+|+. |||..++|+.|+|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEK-YGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34689999999999999999999999 9999999998875 6889999999999999999999 999999999999999
Q ss_pred cCCC
Q 013446 429 SKTP 432 (443)
Q Consensus 429 Ak~~ 432 (443)
+++.
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 9865
No 44
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.66 E-value=5e-16 Score=131.92 Aligned_cols=78 Identities=14% Similarity=0.091 Sum_probs=73.8
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
..++|||+|||+.+|+++|+++|++ ||.|.+++|+.|. +.++|||||+|.+.++|.+|++ |||..++|+.|+|+++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~-~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRK-YGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4579999999999999999999999 9999999999886 6899999999999999999999 9999999999999998
Q ss_pred CC
Q 013446 430 KT 431 (443)
Q Consensus 430 k~ 431 (443)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 45
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7e-16 Score=125.94 Aligned_cols=83 Identities=23% Similarity=0.355 Sum_probs=76.5
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
..++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+. |||..+.|++|+|+|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEP-FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4589999999999999999999999 9999999999875 6899999999999999999999 9999999999999999
Q ss_pred CCCCCCC
Q 013446 430 KTPVRPR 436 (443)
Q Consensus 430 k~~~~~~ 436 (443)
++.....
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 8764443
No 46
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.65 E-value=3.8e-16 Score=126.78 Aligned_cols=82 Identities=24% Similarity=0.260 Sum_probs=76.8
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
..++|||+|||..+|+++|+++|++ ||.|..++++++.+.++|||||+|.+.++|.+|+. |||..++|++|+|+++++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNE-CGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHT-TSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4589999999999999999999999 99999999998778899999999999999999999 999999999999999987
Q ss_pred CCCC
Q 013446 432 PVRP 435 (443)
Q Consensus 432 ~~~~ 435 (443)
+..+
T Consensus 86 ~~~~ 89 (92)
T 2dgv_A 86 ASGP 89 (92)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6544
No 47
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.65 E-value=6.5e-16 Score=123.95 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=72.8
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
..++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+. |||..++|+.|+|+||
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4589999999999999999999999 9999999999874 7899999999999999999999 9999999999999999
Q ss_pred CCC
Q 013446 430 KTP 432 (443)
Q Consensus 430 k~~ 432 (443)
++.
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 853
No 48
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.5e-16 Score=127.32 Aligned_cols=81 Identities=22% Similarity=0.308 Sum_probs=75.4
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEE-EEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRL-RLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~v-rI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
..++|||+|||..+|+++|+++|++ ||.|..+ +++.+. +.++|||||+|.+.++|.+|+. |||..++|++|+|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSA-FGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHT-TSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4689999999999999999999999 9999999 998874 7889999999999999999999 999999999999999
Q ss_pred cCCCCC
Q 013446 429 SKTPVR 434 (443)
Q Consensus 429 Ak~~~~ 434 (443)
+++...
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987643
No 49
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.7e-16 Score=128.77 Aligned_cols=82 Identities=27% Similarity=0.365 Sum_probs=75.9
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
...++|||+|||..+|+++|+++|++ ||.|..+.|+.+. +.++|||||+|.+.++|.+|+. |||..++|++|+|.|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTT-TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhc-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34689999999999999999999999 9999999998875 6889999999999999999998 999999999999999
Q ss_pred cCCCCC
Q 013446 429 SKTPVR 434 (443)
Q Consensus 429 Ak~~~~ 434 (443)
+++...
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987633
No 50
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-15 Score=124.71 Aligned_cols=80 Identities=23% Similarity=0.252 Sum_probs=74.9
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
....++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+. |||..++|++|+|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHT-TSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345689999999999999999999999 9999999998876 6889999999999999999999 99999999999999
Q ss_pred ecCC
Q 013446 428 PSKT 431 (443)
Q Consensus 428 ~Ak~ 431 (443)
||++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9975
No 51
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.65 E-value=4.4e-16 Score=124.38 Aligned_cols=77 Identities=29% Similarity=0.420 Sum_probs=72.6
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
..++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+. |||..++|++|+|+||
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhc-cCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4589999999999999999999999 9999999998874 6789999999999999999998 9999999999999998
Q ss_pred C
Q 013446 430 K 430 (443)
Q Consensus 430 k 430 (443)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 52
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=9.4e-16 Score=126.66 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=75.3
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
...++|||+|||..+|+++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.+|+. |||..++|++|+|.|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKA-HGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45689999999999999999999999 9999999999887 7889999999999999999998 9999999999999999
Q ss_pred CCC
Q 013446 430 KTP 432 (443)
Q Consensus 430 k~~ 432 (443)
++.
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 53
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.5e-16 Score=126.55 Aligned_cols=81 Identities=23% Similarity=0.266 Sum_probs=74.5
Q ss_pred cceeeeeeCCCCCCCHHHHH----HHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 353 CARTIYCTNIDKKVTQADVK----LFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~----elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
..++|||+|||..+|+++|+ ++|++ ||.|.+|+|+.+... +|||||+|.+.++|.+|+. |||..++|++|+|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~-~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFAR-HGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccc-cCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 35799999999999999999 99999 999999999988744 8999999999999999999 99999999999999
Q ss_pred ecCCCCCC
Q 013446 428 PSKTPVRP 435 (443)
Q Consensus 428 ~Ak~~~~~ 435 (443)
+|++...+
T Consensus 86 ~a~~~~~~ 93 (96)
T 2dgx_A 86 LATGASGP 93 (96)
T ss_dssp ECCCSSCC
T ss_pred EcCCCCCC
Confidence 99876443
No 54
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1e-15 Score=126.16 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=75.5
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeec
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~A 429 (443)
...++|||+|||..+|+++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.+|++|++..++|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKK-FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSS-SSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34589999999999999999999999 9999999999875 67899999999999999999999999999999999999
Q ss_pred CCCC
Q 013446 430 KTPV 433 (443)
Q Consensus 430 k~~~ 433 (443)
++..
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8653
No 55
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.5e-15 Score=126.87 Aligned_cols=79 Identities=28% Similarity=0.361 Sum_probs=74.1
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
...++|||+|||..+|+++|+++|++ ||.|..++|+.+. +.++|||||+|.+.++|.+|+. |||..++|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSM-AGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 34689999999999999999999999 9999999998876 6889999999999999999999 9999999999999999
Q ss_pred CC
Q 013446 430 KT 431 (443)
Q Consensus 430 k~ 431 (443)
+.
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 56
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.64 E-value=4.3e-16 Score=131.97 Aligned_cols=102 Identities=22% Similarity=0.363 Sum_probs=89.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
...++|||+|||..+|+++|+++|+.||.|.+|.+..+.. ++|||||+|.+. ++|.+|+. |+|..++|+.|.|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE-TRGTAYVVYEDI-FDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT-TTTCEEEEESSH-HHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-CCcEEEEEECCH-HHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4568999999999999999999999999999999987643 589999999999 99999999 99999999999999984
Q ss_pred CCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHhhhcCC
Q 013446 333 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG 380 (443)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG 380 (443)
.. .. -++++...++++|.++|++ ||
T Consensus 84 ~~--------------~~--------~~~~~~~~~~~~l~~~~~~-~g 108 (115)
T 3lqv_A 84 AN--------------RA--------FQKMDTKKKEEQLKLLKEK-YG 108 (115)
T ss_dssp HH--------------HH--------TTTSCHHHHHHHHHHHHHH-HC
T ss_pred CC--------------hh--------hhhhhHhHhHHHHHHHHHH-hC
Confidence 11 00 1567888899999999998 77
No 57
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=127.38 Aligned_cols=81 Identities=20% Similarity=0.281 Sum_probs=75.6
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEecc---CCCCceEEEEEeCCHHHHHHHHh-h-CCceeCCeeeE
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD---YHHSTRIAFVEFVMAESAIAALN-C-SGVVLGSLPIR 425 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d---~~~srGfAFVeF~t~e~A~~Al~-l-nG~~l~Gr~L~ 425 (443)
....++|||+|||..+|+++|+++|++ ||.|..|+++.+ .+.++|||||+|.+.++|.+|+. | ||..++|++|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFST-FGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHc-cCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 345689999999999999999999999 999999999987 37899999999999999999999 9 99999999999
Q ss_pred EeecCCC
Q 013446 426 VSPSKTP 432 (443)
Q Consensus 426 V~~Ak~~ 432 (443)
|+|+++.
T Consensus 91 v~~a~~~ 97 (107)
T 2cph_A 91 LEWADSE 97 (107)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 9999875
No 58
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=124.61 Aligned_cols=78 Identities=23% Similarity=0.317 Sum_probs=73.4
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
...++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++ |||..++|++|+|+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSK-YGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTT-TSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 35689999999999999999999999 9999999998875 6789999999999999999998 999999999999999
Q ss_pred cC
Q 013446 429 SK 430 (443)
Q Consensus 429 Ak 430 (443)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 59
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.1e-16 Score=128.11 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=76.9
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
..++|||+|||..+|+++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.+|++ |||..++|++|+|+|+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSK-YGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHH-HSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4589999999999999999999999 9999999999875 6789999999999999999998 9999999999999999
Q ss_pred CCCCCCCC
Q 013446 430 KTPVRPRA 437 (443)
Q Consensus 430 k~~~~~~~ 437 (443)
++....+.
T Consensus 90 ~~~~~~~~ 97 (102)
T 1x5s_A 90 GKSSDNRS 97 (102)
T ss_dssp ECCCCCCC
T ss_pred CCCCCCCC
Confidence 87654443
No 60
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=127.90 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=75.9
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hC------CceeCC
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CS------GVVLGS 421 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-ln------G~~l~G 421 (443)
....++|||+|||..+|+++|+++|++ ||.|..|+|+.+. +.++|||||+|.+.++|.+|+. || |..++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQ-FGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 345689999999999999999999999 9999999999876 6889999999999999999999 99 999999
Q ss_pred eeeEEeecCCCC
Q 013446 422 LPIRVSPSKTPV 433 (443)
Q Consensus 422 r~L~V~~Ak~~~ 433 (443)
++|+|.|+++..
T Consensus 91 ~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 RQLKVDLAVTRD 102 (111)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEEEECCCCc
Confidence 999999998653
No 61
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.64 E-value=1e-15 Score=125.66 Aligned_cols=80 Identities=26% Similarity=0.321 Sum_probs=74.9
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
+++|||+|||..+|+++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.+|+. |||..++|+.|+|++|+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSN-VGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 479999999999999999999999 9999999999875 6889999999999999999998 99999999999999998
Q ss_pred CCCC
Q 013446 431 TPVR 434 (443)
Q Consensus 431 ~~~~ 434 (443)
+...
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7543
No 62
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=2.1e-16 Score=140.56 Aligned_cols=154 Identities=15% Similarity=0.305 Sum_probs=105.4
Q ss_pred CCCcchhhHHHHHHHHhccCCccccccCCccCccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCcchhccccCCCCC
Q 013446 158 GGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSFGQ 237 (443)
Q Consensus 158 ~~~~~~~~~~eL~elfs~~gpla~~~~PP~~~~a~~~~~~~~~~~gg~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~f~~ 237 (443)
+++|+..+.++|.++|++||++..+.++....+...-++++..+. ... ...........+ .
T Consensus 9 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~-----~~~-------------~a~~A~~~~~~~-~ 69 (167)
T 2cjk_A 9 GGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFE-----KPS-------------SVDEVVKTQHIL-D 69 (167)
T ss_dssp CSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEES-----STH-------------HHHHHHHSCCEE-T
T ss_pred eCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEc-----cHH-------------HHHHHHhccccc-C
Confidence 347889999999999999999999888776433221111111110 000 000000000000 0
Q ss_pred CCCCCCCCccccccccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH
Q 013446 238 GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN 315 (443)
Q Consensus 238 g~~r~~~~~~~~~~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~ 315 (443)
|+. ...............++|||+|||.++|+++|.++|++||.|.++++..++ +.++|||||+|.+. ++|.+|++
T Consensus 70 g~~-i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~ 147 (167)
T 2cjk_A 70 GKV-IDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA-DAVDRVCQ 147 (167)
T ss_dssp TEE-CCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSH-HHHHHHHH
T ss_pred CeE-cccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCH-HHHHHHHh
Confidence 011 000000111122346899999999999999999999999999999999876 45799999999999 99999999
Q ss_pred hcccccCCcceeecCCC
Q 013446 316 LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 316 lng~~l~Gr~I~V~~S~ 332 (443)
++|..++|++|.|.++.
T Consensus 148 ~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 148 NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp CSEECSSSSCEEEEECC
T ss_pred CCCEEeCCeEEEEeecC
Confidence 99999999999999984
No 63
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=9.1e-16 Score=131.15 Aligned_cols=82 Identities=21% Similarity=0.327 Sum_probs=76.1
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
..++|||+|||..+|+++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|+. |||..++|+.|+|++++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGK-HGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHT-SSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4589999999999999999999999 9999999999886 7899999999999999999999 99999999999999998
Q ss_pred CCCCC
Q 013446 431 TPVRP 435 (443)
Q Consensus 431 ~~~~~ 435 (443)
++..+
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 65544
No 64
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=124.76 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=74.3
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
...++|||+|||+.+|+++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.+|+. |||..++|++|+|+|+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQ-AGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 35689999999999999999999999 9999999999876 7889999999999999999999 9999999999999998
Q ss_pred CC
Q 013446 430 KT 431 (443)
Q Consensus 430 k~ 431 (443)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 65
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.63 E-value=8.8e-16 Score=123.25 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=73.3
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--C-CCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--H-HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~-~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
..++|||+|||..+|+++|+++|++ ||.|..+.++.+. + .++|||||+|.+.++|.+|+. |||..++|+.|+|++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3579999999999999999999999 9999999998876 2 389999999999999999999 999999999999999
Q ss_pred cCCC
Q 013446 429 SKTP 432 (443)
Q Consensus 429 Ak~~ 432 (443)
+.++
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9765
No 66
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=126.44 Aligned_cols=83 Identities=25% Similarity=0.311 Sum_probs=76.8
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
...++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+. |||..++|++|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQ-AGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45689999999999999999999999 9999999998875 6899999999999999999999 999999999999999
Q ss_pred cCCCCCC
Q 013446 429 SKTPVRP 435 (443)
Q Consensus 429 Ak~~~~~ 435 (443)
+++....
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9876443
No 67
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.63 E-value=9.6e-16 Score=138.55 Aligned_cols=131 Identities=17% Similarity=0.125 Sum_probs=75.5
Q ss_pred EEEcChHHHHHHHHH-hcccccC--CcceeecCCCCCcCC-CCCCC--C---CCCcccccccceeeeeeCCCCCCCHHHH
Q 013446 301 IEFTDEAEGARAALN-LAGTMLG--FYPVRVLPSKTAIAP-VNPTF--L---PRTEDEREMCARTIYCTNIDKKVTQADV 371 (443)
Q Consensus 301 VeF~t~~e~A~~Al~-lng~~l~--Gr~I~V~~S~~~~~p-~~~~~--~---~~~~~~~~~~~~tIfV~NLp~~~TeedL 371 (443)
.+|.+. +++..|+. +++.... |+......+...... ..+.. . ...........++|||+|||..+|+++|
T Consensus 11 ee~e~~-~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVD-EDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEI 89 (165)
T ss_dssp --------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHH
T ss_pred hhhhcc-ccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 568888 88888887 7765544 555554443211100 00000 0 0011112344679999999999999999
Q ss_pred HHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCCCC
Q 013446 372 KLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPV 433 (443)
Q Consensus 372 ~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~~~ 433 (443)
+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..|+|++|+|.|+++..
T Consensus 90 ~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 90 QEKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 153 (165)
T ss_dssp HHHHGG-GSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred HHHhhc-CCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 999999 9999999999874 6889999999999999999999 99999999999999997543
No 68
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.5e-15 Score=124.79 Aligned_cols=81 Identities=21% Similarity=0.314 Sum_probs=75.7
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
+...++|||+|||..+|+++|+++|+.||.|.+|+++.++..++|||||+|.+. ++|.+|+. |+|..+.|++|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS-ADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCH-HHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCH-HHHHHHHHHhCCCEECCEEEEEEEc
Confidence 446799999999999999999999999999999999998877899999999999 99999998 9999999999999998
Q ss_pred CCC
Q 013446 332 KTA 334 (443)
Q Consensus 332 ~~~ 334 (443)
+..
T Consensus 91 ~~~ 93 (103)
T 2cq3_A 91 TAR 93 (103)
T ss_dssp CSS
T ss_pred ccC
Confidence 643
No 69
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=127.30 Aligned_cols=80 Identities=23% Similarity=0.253 Sum_probs=74.8
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
...++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+. |||..++|+.|+|+|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-cCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45689999999999999999999999 9999999998875 6889999999999999999999 999999999999999
Q ss_pred cCCC
Q 013446 429 SKTP 432 (443)
Q Consensus 429 Ak~~ 432 (443)
|++.
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 9754
No 70
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.62 E-value=1.8e-15 Score=121.86 Aligned_cols=79 Identities=32% Similarity=0.516 Sum_probs=74.3
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak 430 (443)
..++|||+|||..+|+++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.+|+.|||..++|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGG-GCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999 9999999999874 788999999999999999999999999999999999998
Q ss_pred CC
Q 013446 431 TP 432 (443)
Q Consensus 431 ~~ 432 (443)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 71
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=129.79 Aligned_cols=78 Identities=22% Similarity=0.220 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
.+.++|||+|||+.+|+++|+++|++||.|.+|+|+.|+. .++|||||+|.+. ++|++|++ |||..+.|++|.|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~-~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTST-RGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH-HHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCH-HHHHHHHHHhCCCEECCeEEEEEE
Confidence 3568999999999999999999999999999999998875 4799999999999 99999998 999999999999998
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
+.
T Consensus 83 a~ 84 (110)
T 3s8s_A 83 DI 84 (110)
T ss_dssp CS
T ss_pred CC
Confidence 74
No 72
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=125.35 Aligned_cols=80 Identities=29% Similarity=0.408 Sum_probs=75.4
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
+...++|||+|||+.+|+++|+++|++||.|.+|+++.++.+++|||||+|.+. ++|.+|+. |+|..+.|++|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEH-RDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSH-HHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCH-HHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 446799999999999999999999999999999999999888899999999999 99999999 9999999999999998
Q ss_pred CC
Q 013446 332 KT 333 (443)
Q Consensus 332 ~~ 333 (443)
+.
T Consensus 91 ~~ 92 (103)
T 2cqi_A 91 TT 92 (103)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 73
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=128.10 Aligned_cols=81 Identities=23% Similarity=0.323 Sum_probs=75.0
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceE--------EEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCcee
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVY--------RLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVL 419 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~--------~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l 419 (443)
....++|||+|||..+|+++|+++|++ ||.|. .|+|+.+. +.++|||||+|.+.++|.+|+. |||..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQ-CGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTT-TSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345689999999999999999999999 99999 69998874 7889999999999999999999 999999
Q ss_pred CCeeeEEeecCCC
Q 013446 420 GSLPIRVSPSKTP 432 (443)
Q Consensus 420 ~Gr~L~V~~Ak~~ 432 (443)
.|+.|+|.++++.
T Consensus 91 ~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 91 QGSKLKVSLARKK 103 (113)
T ss_dssp TTEECEEECSSCC
T ss_pred CCCEEEEEECCCC
Confidence 9999999999875
No 74
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.62 E-value=1.6e-15 Score=127.43 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=75.3
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
....++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+. |||..++|++|+|+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345689999999999999999999999 9999999998875 6889999999999999999999 99999999999999
Q ss_pred ecCCC
Q 013446 428 PSKTP 432 (443)
Q Consensus 428 ~Ak~~ 432 (443)
|+++.
T Consensus 102 ~a~~~ 106 (110)
T 1oo0_B 102 WCFVK 106 (110)
T ss_dssp ESEES
T ss_pred EcccC
Confidence 99764
No 75
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.62 E-value=4.9e-17 Score=152.45 Aligned_cols=155 Identities=19% Similarity=0.238 Sum_probs=104.8
Q ss_pred CCcchhhHHHHHHHHhccCCccccccCCccCccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCcchhccccCCC-CC
Q 013446 159 GGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSF-GQ 237 (443)
Q Consensus 159 ~~~~~~~~~eL~elfs~~gpla~~~~PP~~~~a~~~~~~~~~~~gg~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~f-~~ 237 (443)
++|+..+.++|.++|++||++..+.++....+...-.+++..+. .. ..........+.. -.
T Consensus 22 nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~-----~~-------------~~A~~Ai~~~~~~~~~ 83 (213)
T 4f02_A 22 DLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ-----QP-------------ADAERALDTMNFDVIK 83 (213)
T ss_dssp SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEES-----SH-------------HHHHHHHHHHTTCEET
T ss_pred CCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeC-----CH-------------HHHHHHHHHhhhhhcC
Confidence 37889999999999999999998877654332211011111110 00 0000000000000 00
Q ss_pred CCC-CCCCCccccccccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-
Q 013446 238 GKR-RMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN- 315 (443)
Q Consensus 238 g~~-r~~~~~~~~~~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~- 315 (443)
|+. +................+|||+|||+.+|+++|+++|+.||.|.+|+|+.|+++++|||||+|.+. ++|.+|++
T Consensus 84 g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~-~~a~~Ai~~ 162 (213)
T 4f02_A 84 GKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQ-EAAERAIEK 162 (213)
T ss_dssp TEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSH-HHHHHHHHH
T ss_pred CcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCH-HHHHHHHHH
Confidence 000 000000011112234579999999999999999999999999999999999888899999999999 99999998
Q ss_pred hcccccCCcceeecCCC
Q 013446 316 LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 316 lng~~l~Gr~I~V~~S~ 332 (443)
|+|..++|++|.|.+++
T Consensus 163 lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 163 MNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp HTTCEETTEECEEEECC
T ss_pred hCCCEECCEEEEEEEcC
Confidence 99999999999999874
No 76
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=4.9e-15 Score=123.11 Aligned_cols=80 Identities=25% Similarity=0.359 Sum_probs=74.3
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeec
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~A 429 (443)
...++|||+|||..+|+++|+++|++ || |..|+++.+. +.++|||||+|.+.++|.+|+.|||..|+|++|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKD-LS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTT-SC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHh-CC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 34689999999999999999999999 87 9999999876 68899999999999999999999999999999999999
Q ss_pred CCCC
Q 013446 430 KTPV 433 (443)
Q Consensus 430 k~~~ 433 (443)
++..
T Consensus 91 ~~~~ 94 (103)
T 2dng_A 91 EGRK 94 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8653
No 77
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.62 E-value=1.7e-15 Score=126.28 Aligned_cols=83 Identities=27% Similarity=0.420 Sum_probs=75.9
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCcee---CCeee
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVL---GSLPI 424 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l---~Gr~L 424 (443)
....++|||+|||..+|+++|+++|++ ||.|..|+++.+. +.++|||||+|.+.++|.+|+. |||..+ .|++|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEE-FGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHH-HSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345689999999999999999999999 9999999999875 6889999999999999999999 999988 89999
Q ss_pred EEeecCCCCC
Q 013446 425 RVSPSKTPVR 434 (443)
Q Consensus 425 ~V~~Ak~~~~ 434 (443)
+|.|+++...
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987543
No 78
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=125.38 Aligned_cols=80 Identities=15% Similarity=0.249 Sum_probs=75.1
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceE-EEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCee----e
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVY-RLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLP----I 424 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~-~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~----L 424 (443)
..++|||+|||..+|+++|+++|++ ||.|. .++++.+. +.++|||||+|.+.++|.+|+. |||..+.|+. |
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFAT-MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHH-TTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH-hCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4689999999999999999999999 99999 99999875 6899999999999999999999 9999999999 9
Q ss_pred EEeecCCCC
Q 013446 425 RVSPSKTPV 433 (443)
Q Consensus 425 ~V~~Ak~~~ 433 (443)
+|+||++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998763
No 79
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1e-15 Score=129.25 Aligned_cols=81 Identities=19% Similarity=0.285 Sum_probs=76.0
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
....++|||+|||..+|+++|+++|++ ||.|..++++.+.+.++|||||+|.+.++|.+|+. |||..++|++|+|+++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGG-TCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHh-cCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 445689999999999999999999999 99999999998877789999999999999999999 9999999999999999
Q ss_pred CCC
Q 013446 430 KTP 432 (443)
Q Consensus 430 k~~ 432 (443)
++.
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 864
No 80
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.61 E-value=2.4e-15 Score=120.91 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=72.0
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeec
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~A 429 (443)
...++|||+|||+.+|+++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.+|+.+++..++|+.|+|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTK-FGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 45689999999999999999999999 9999999998875 78999999999999999999998888999999999986
No 81
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.61 E-value=2.4e-15 Score=128.95 Aligned_cols=83 Identities=31% Similarity=0.531 Sum_probs=76.6
Q ss_pred ccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEe
Q 013446 350 REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVS 427 (443)
Q Consensus 350 ~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~ 427 (443)
.....++|||+|||..+|+++|+++|++ ||.|..|+++.+. +.++|||||+|.+.++|.+|+.|||..|+|+.|+|+
T Consensus 32 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 32 KEIDKRSVYVGNVDYGSTAQDLEAHFSS-CGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVL 110 (124)
T ss_dssp HHHHHTEEEEEEECTTCCHHHHHHHHHT-TSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 3445789999999999999999999999 9999999999874 789999999999999999999999999999999999
Q ss_pred ecCCCC
Q 013446 428 PSKTPV 433 (443)
Q Consensus 428 ~Ak~~~ 433 (443)
|+++..
T Consensus 111 ~a~~~~ 116 (124)
T 2jwn_A 111 PKRTNM 116 (124)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998653
No 82
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.6e-15 Score=124.53 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=73.7
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
...++|||+|||..+|+++|+++|++ ||.|..+.++.+ +.++|||||+|.+.++|.+|++ ||+..|+|+.|+|+|++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYK-YGAIRDIDLKNR-RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEECCS-SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 45689999999999999999999999 999999999665 4579999999999999999998 99999999999999998
Q ss_pred CCC
Q 013446 431 TPV 433 (443)
Q Consensus 431 ~~~ 433 (443)
+..
T Consensus 98 ~~~ 100 (109)
T 1x4a_A 98 SGR 100 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
No 83
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.61 E-value=3.1e-15 Score=121.34 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
.+.++|||+|||.++|+++|+++|++||.|.+|++..+.+.++|||||+|.+. ++|.+|+. |+|..+.|++|.|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~-~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESP-EVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSH-HHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCH-HHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 35699999999999999999999999999999999987677899999999999 99999999 99999999999999986
Q ss_pred CC
Q 013446 333 TA 334 (443)
Q Consensus 333 ~~ 334 (443)
..
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 84
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=127.24 Aligned_cols=81 Identities=22% Similarity=0.354 Sum_probs=75.3
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
....++|||+|||..+|+++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.+|+. |||..++|++|+|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTT-TSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345689999999999999999999999 9999999998875 6889999999999999999999 99999999999999
Q ss_pred ecCCC
Q 013446 428 PSKTP 432 (443)
Q Consensus 428 ~Ak~~ 432 (443)
++++.
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 99764
No 85
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.61 E-value=3.4e-15 Score=128.31 Aligned_cols=86 Identities=21% Similarity=0.272 Sum_probs=78.8
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
...++|||+|||..+|+++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.+|+. |||..++|++|+|++|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHT-TSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 45689999999999999999999999 9999999999876 6789999999999999999999 9999999999999999
Q ss_pred CCCCCCCCC
Q 013446 430 KTPVRPRAP 438 (443)
Q Consensus 430 k~~~~~~~p 438 (443)
.+...++++
T Consensus 112 ~~~~~~~~~ 120 (124)
T 2kt5_A 112 ASQIDLEHH 120 (124)
T ss_dssp CCTTCCCCC
T ss_pred CCCCCCCCC
Confidence 876555553
No 86
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=127.77 Aligned_cols=79 Identities=25% Similarity=0.255 Sum_probs=71.0
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hC--CceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS--GVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-ln--G~~l~Gr~L~V~~ 428 (443)
...++|||+|||+.+|+++|+++|++ ||.|.+|+|+++ ||||||+|.+.++|.+|++ |+ +..+.|++|+|+|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~-fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHH-HCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 34689999999999999999999999 999999999875 7999999999999999998 76 4899999999999
Q ss_pred cCCCCCC
Q 013446 429 SKTPVRP 435 (443)
Q Consensus 429 Ak~~~~~ 435 (443)
|++....
T Consensus 89 A~~~~~~ 95 (105)
T 1sjq_A 89 SNHKELK 95 (105)
T ss_dssp CSSSSCC
T ss_pred cCCCCCC
Confidence 9864333
No 87
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=127.36 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=73.0
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak 430 (443)
..++|||+|||+.+|+++|+++|++ ||.|.+|+|+.|. +.++|||||+|.+.++|.+|+.++|..++|+.|.|.+++
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~-~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHT-SSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhh-cCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 4589999999999999999999999 9999999999876 789999999999999999999999999999999999875
No 88
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.61 E-value=2.8e-15 Score=127.51 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=73.5
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
....++|||+|||..+|+++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.+|++ |||..++|++|+|+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLP-FGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTT-SCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 445689999999999999999999999 9999999998875 6899999999999999999999 99999999999999
Q ss_pred ecC
Q 013446 428 PSK 430 (443)
Q Consensus 428 ~Ak 430 (443)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 985
No 89
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.1e-15 Score=125.14 Aligned_cols=85 Identities=13% Similarity=0.196 Sum_probs=77.3
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEee
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 428 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~ 428 (443)
....++|||+|||..+|+++|+++|++ ||.|..|+|+.+. +.++|||||+|.+.++|.+|+..++..|+|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQ-WGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTS-SCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEE
Confidence 445689999999999999999999999 9999999999875 6889999999999999999999899999999999999
Q ss_pred cCCCCCCC
Q 013446 429 SKTPVRPR 436 (443)
Q Consensus 429 Ak~~~~~~ 436 (443)
+++.....
T Consensus 103 a~~~~~~~ 110 (116)
T 1x4b_A 103 AVAREESG 110 (116)
T ss_dssp CSSCCCCC
T ss_pred CCCCccCC
Confidence 98764433
No 90
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.60 E-value=3.9e-15 Score=130.14 Aligned_cols=84 Identities=19% Similarity=0.305 Sum_probs=77.0
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
....++|||+|||..+|+++|+++|+. ||.|..|+|+.+. +.++|||||+|.+.++|.+|+. |||..++|+.|+|+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFER-YGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHH-HSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 445689999999999999999999999 9999999998875 6789999999999999999999 99999999999999
Q ss_pred ecCCCCCC
Q 013446 428 PSKTPVRP 435 (443)
Q Consensus 428 ~Ak~~~~~ 435 (443)
++++....
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99875433
No 91
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.60 E-value=4.2e-15 Score=124.07 Aligned_cols=78 Identities=23% Similarity=0.314 Sum_probs=73.8
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
...++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+. |||..++|+.|+|++|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45689999999999999999999999 9999999998876 7889999999999999999999 9999999999999998
Q ss_pred C
Q 013446 430 K 430 (443)
Q Consensus 430 k 430 (443)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 6
No 92
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.9e-15 Score=124.31 Aligned_cols=82 Identities=24% Similarity=0.319 Sum_probs=74.8
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceee
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRV 328 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V 328 (443)
...+.++|||+|||.++|+++|+++|+.||.|..|.+..++. .++|||||+|.+. ++|.+|+. |+|..+.|++|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDR-RDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSS-SHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCH-HHHHHHHHHcCCCEECCcEEEE
Confidence 344679999999999999999999999999999999998764 4689999999999 99999999 9999999999999
Q ss_pred cCCCCC
Q 013446 329 LPSKTA 334 (443)
Q Consensus 329 ~~S~~~ 334 (443)
.+++..
T Consensus 88 ~~a~~~ 93 (103)
T 2dnm_A 88 QVARYG 93 (103)
T ss_dssp EECSSC
T ss_pred EECCcC
Confidence 998643
No 93
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=123.17 Aligned_cols=82 Identities=23% Similarity=0.312 Sum_probs=72.8
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
...++|||+|||..+|+++|+++|++ ||.| +++.+. +.++|||||+|.+.++|.+|+. |||..+.|++|+|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEK-ATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSS-CSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 45689999999999999999999999 8987 455554 7899999999999999999999 9999999999999999
Q ss_pred CCCCCCCC
Q 013446 430 KTPVRPRA 437 (443)
Q Consensus 430 k~~~~~~~ 437 (443)
++..++..
T Consensus 89 ~~~~~~~~ 96 (101)
T 2fc9_A 89 GPRGSPNS 96 (101)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 87755443
No 94
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.5e-15 Score=124.27 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=75.3
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeec
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~A 429 (443)
...++|||+|||..+|+++|+++|++ ||.|..|+|+.+. +.++|||||+|.+.++|.+|+..++..|+|+.|+|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQ-YGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHT-TSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 45689999999999999999999999 9999999999875 68999999999999999999988999999999999999
Q ss_pred CCCC
Q 013446 430 KTPV 433 (443)
Q Consensus 430 k~~~ 433 (443)
++..
T Consensus 93 ~~~~ 96 (105)
T 2dh8_A 93 TPRG 96 (105)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 8653
No 95
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.60 E-value=9.9e-16 Score=124.55 Aligned_cols=76 Identities=17% Similarity=0.280 Sum_probs=67.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCG--QVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G--~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
.+|||+|||+++|+++|+++|++|| .|.+++++.|+. .++|||||+|.+. ++|.+|++ |+|..++|++|.|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~-~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSE-ASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CH-HHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCH-HHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 6899999999999999999999999 999999998864 5799999999999 99999998 9999999999999998
Q ss_pred CC
Q 013446 332 KT 333 (443)
Q Consensus 332 ~~ 333 (443)
..
T Consensus 81 ~~ 82 (90)
T 3p5t_L 81 NK 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 96
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.60 E-value=5.3e-16 Score=128.96 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=73.5
Q ss_pred cceeeeeeCCCC------CCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCC-e
Q 013446 353 CARTIYCTNIDK------KVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGS-L 422 (443)
Q Consensus 353 ~~~tIfV~NLp~------~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~G-r 422 (443)
..++|||+|||. .+++++|+++|++ ||.|.+++|+.+. +.++|||||+|.+.++|.+|+. |||..+.| +
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~-~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSK-AGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHT-TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHh-cCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 357999999999 9999999999999 9999999999886 7899999999999999999998 99999999 9
Q ss_pred eeEEeecCC
Q 013446 423 PIRVSPSKT 431 (443)
Q Consensus 423 ~L~V~~Ak~ 431 (443)
+|+|.+|++
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999864
No 97
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=126.94 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=73.3
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecC
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~ 330 (443)
.+...++|||+|||+++|+++|+++|++||.|.+|+++.|+ +.++|||||+|.+. ++|.+|+.++|..++|++|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~-e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSI-ESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSH-HHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCH-HHHHHHHHcCCCEECCEEEEEEE
Confidence 34456999999999999999999999999999999999876 45799999999999 99999999999999999999987
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
+.
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 63
No 98
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1e-14 Score=121.07 Aligned_cols=84 Identities=18% Similarity=0.266 Sum_probs=75.6
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeec
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~A 429 (443)
...++|||+|||..+|+++|+++|++ ||.|..|+|+.+. +.++|||||+|.+.++|.+|+. ++..++|++|+|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFST-FGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHh-cCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEec
Confidence 45689999999999999999999999 9999999999875 7899999999999999999998 578999999999999
Q ss_pred CCCCCCCC
Q 013446 430 KTPVRPRA 437 (443)
Q Consensus 430 k~~~~~~~ 437 (443)
++...+..
T Consensus 91 ~~~~~~~~ 98 (103)
T 2cqg_A 91 NSKQSQDS 98 (103)
T ss_dssp CTTCCCCC
T ss_pred CCCCcCCC
Confidence 87544433
No 99
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.8e-15 Score=124.57 Aligned_cols=83 Identities=20% Similarity=0.323 Sum_probs=75.0
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
....++|||+|||..+|+++|+++|++ ||.|..|+++.+ +|||||+|.+.++|.+|+. |+|..++|++|+|.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSP-FGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHH-HSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 345689999999999999999999999 999999999876 7999999999999999998 9999999999999999
Q ss_pred CCCCCCCCC
Q 013446 430 KTPVRPRAP 438 (443)
Q Consensus 430 k~~~~~~~p 438 (443)
++...++.+
T Consensus 97 ~~~~~~~~~ 105 (109)
T 1x4g_A 97 KESPDMTSG 105 (109)
T ss_dssp CCCCSSCCC
T ss_pred CCCCCCCCC
Confidence 876554443
No 100
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.60 E-value=3e-15 Score=122.14 Aligned_cols=79 Identities=32% Similarity=0.486 Sum_probs=73.2
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~-~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
+...++|||+|||+.+|+++|+++|++||.|.+|++..++. .++|||||+|.+. ++|.+|+. |+|..+.|++|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP-ESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESST-HHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCH-HHHHHHHHHhCCCEECCCEEEEEE
Confidence 34569999999999999999999999999999999998764 4689999999999 99999999 999999999999999
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
++
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 101
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.2e-15 Score=122.70 Aligned_cols=80 Identities=24% Similarity=0.313 Sum_probs=74.2
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC---CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY---HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~---~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~ 428 (443)
...++|||+|||..+|+++|+++|++ || |..|+|+.+. +.++|||||+|.+.++|.+|+.|||..++|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTT-SC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHH-CC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 34589999999999999999999999 89 9999998875 6789999999999999999999999999999999999
Q ss_pred cCCCC
Q 013446 429 SKTPV 433 (443)
Q Consensus 429 Ak~~~ 433 (443)
+++..
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98653
No 102
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4e-15 Score=123.50 Aligned_cols=81 Identities=20% Similarity=0.388 Sum_probs=74.7
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
+...++|||+|||+.+|+++|+++|++||.|.+|++..+.+.++|||||+|.+. ++|.+|+. |+|..+.|++|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSP-EEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSH-HHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCH-HHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 346799999999999999999999999999999999988556799999999999 99999999 9999999999999998
Q ss_pred CCC
Q 013446 332 KTA 334 (443)
Q Consensus 332 ~~~ 334 (443)
+..
T Consensus 91 ~~~ 93 (103)
T 2d9p_A 91 QRK 93 (103)
T ss_dssp SSC
T ss_pred ccc
Confidence 643
No 103
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-15 Score=123.45 Aligned_cols=79 Identities=27% Similarity=0.439 Sum_probs=73.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEEcChHHHHHHHHH-hcccccCCcceee
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-----SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRV 328 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~-----~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V 328 (443)
+.++|||+|||+++|+++|+++|++||.|..|.+..++. .++|||||+|.+. ++|.+|+. |+|..+.|++|.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKP-EQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSH-HHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCH-HHHHHHHHHhCCCeeCCeEEEE
Confidence 568999999999999999999999999999999998765 4689999999999 99999999 9999999999999
Q ss_pred cCCCCC
Q 013446 329 LPSKTA 334 (443)
Q Consensus 329 ~~S~~~ 334 (443)
.+++..
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 998654
No 104
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.60 E-value=3e-15 Score=120.32 Aligned_cols=79 Identities=25% Similarity=0.366 Sum_probs=72.0
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHHhcccccCCcceeec
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVL 329 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~ 329 (443)
.+.+.++|||+|||+++|+++|+++|++||.|.+|+++.++. .++|||||+|.+. ++|.+|+++++..+.|++|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDA-ASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESST-HHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCH-HHHHHHHHhCCCEECCEEEEEE
Confidence 345679999999999999999999999999999999998764 4699999999999 9999999988889999999997
Q ss_pred CC
Q 013446 330 PS 331 (443)
Q Consensus 330 ~S 331 (443)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 105
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.1e-15 Score=124.25 Aligned_cols=84 Identities=24% Similarity=0.308 Sum_probs=76.1
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCce-eCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVV-LGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~-l~Gr~L~V~~ 428 (443)
...++|||+|||..+|+++|+++|++.||.|..++|+.+. +.++|||||+|.+.++|.+|+. |+|.. ++|++|+|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 3458999999999999999999999647999999999886 7889999999999999999999 99999 9999999999
Q ss_pred cCCCCCC
Q 013446 429 SKTPVRP 435 (443)
Q Consensus 429 Ak~~~~~ 435 (443)
+++....
T Consensus 87 a~~~~~~ 93 (104)
T 2dhg_A 87 AIPKASR 93 (104)
T ss_dssp CCCCCSC
T ss_pred ccCCCcC
Confidence 9765433
No 106
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.59 E-value=8.6e-16 Score=125.75 Aligned_cols=76 Identities=20% Similarity=0.220 Sum_probs=69.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-h-cccccCCcceeecC
Q 013446 256 RRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-L-AGTMLGFYPVRVLP 330 (443)
Q Consensus 256 ~~tLfVgNLp~~tTeeeL~e~F~~~G-~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-l-ng~~l~Gr~I~V~~ 330 (443)
+.+|||+|||+++|+++|+++|++|| .|.+|++++|+. .++|||||+|.+. ++|.+|++ + ++..++|++|.|.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~-~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHL-QDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSH-HHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCH-HHHHHHHHhcCCCeEECCEEEEEEE
Confidence 47899999999999999999999999 899999998874 4799999999999 99999998 6 46679999999999
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
++
T Consensus 80 a~ 81 (91)
T 2lxi_A 80 SD 81 (91)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 107
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-15 Score=126.20 Aligned_cols=81 Identities=23% Similarity=0.375 Sum_probs=75.2
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
...++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++ |||..++|+.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSE-VGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHT-TSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHh-cCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34689999999999999999999999 9999999998875 6889999999999999999998 999999999999999
Q ss_pred cCCCC
Q 013446 429 SKTPV 433 (443)
Q Consensus 429 Ak~~~ 433 (443)
+++..
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 98653
No 108
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.9e-15 Score=121.30 Aligned_cols=79 Identities=24% Similarity=0.259 Sum_probs=73.4
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
+.+.++|||+|||+.+|+++|+++|++||.|.+|.+..++. .++|||||+|.+. ++|.+|+. |+|..+.|++|.|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV-DDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSH-HHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCH-HHHHHHHHHhCCCEECCEEEEEE
Confidence 34579999999999999999999999999999999998874 4689999999999 99999999 99999999999999
Q ss_pred CCC
Q 013446 330 PSK 332 (443)
Q Consensus 330 ~S~ 332 (443)
+++
T Consensus 91 ~a~ 93 (95)
T 2cqc_A 91 GPS 93 (95)
T ss_dssp CCS
T ss_pred ecC
Confidence 985
No 109
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6.9e-15 Score=119.99 Aligned_cols=79 Identities=29% Similarity=0.422 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
+.++|||+|||.++|+++|+++|++||.|.+|++..++. .++|||||+|.+. ++|.+|+. |+|..+.|++|+|.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDS-ECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCH-HHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCH-HHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 569999999999999999999999999999999998864 4789999999999 99999999 9999999999999998
Q ss_pred CCC
Q 013446 332 KTA 334 (443)
Q Consensus 332 ~~~ 334 (443)
+..
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 643
No 110
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.59 E-value=3.3e-15 Score=123.26 Aligned_cols=78 Identities=27% Similarity=0.310 Sum_probs=73.0
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEE--------EEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYR--------LRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLG 420 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~--------vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~ 420 (443)
...++|||+|||..+|+++|+++|++ ||.|.. ++++.+. +.++|||||+|.+.++|.+|++ |||..++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTT-TSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-hCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 34689999999999999999999999 999999 9998875 6899999999999999999999 9999999
Q ss_pred CeeeEEeecC
Q 013446 421 SLPIRVSPSK 430 (443)
Q Consensus 421 Gr~L~V~~Ak 430 (443)
|++|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999985
No 111
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.59 E-value=3.3e-15 Score=130.26 Aligned_cols=81 Identities=23% Similarity=0.233 Sum_probs=75.6
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
....++|||+|||..+|+++|+++|++ ||.|..|+++.+. +.++|||||+|.+.++|.+|+. |||..|+|++|+|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTT-TSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345689999999999999999999999 9999999999875 6899999999999999999999 99999999999999
Q ss_pred ecCCC
Q 013446 428 PSKTP 432 (443)
Q Consensus 428 ~Ak~~ 432 (443)
|+++.
T Consensus 122 ~a~~~ 126 (129)
T 2kxn_B 122 FSITK 126 (129)
T ss_dssp CCSSS
T ss_pred EecCC
Confidence 99864
No 112
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.59 E-value=7.9e-15 Score=124.09 Aligned_cols=82 Identities=23% Similarity=0.396 Sum_probs=75.0
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceee
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRV 328 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V 328 (443)
.....++|||+|||..+|+++|+++|+.||.|.+|+++.++ +.++|||||+|.+. ++|++|++ |+|..++|++|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK-WDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH-HHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHHhCCCEECCEEEEE
Confidence 34567999999999999999999999999999999999886 34689999999999 99999998 9999999999999
Q ss_pred cCCCCC
Q 013446 329 LPSKTA 334 (443)
Q Consensus 329 ~~S~~~ 334 (443)
.+++..
T Consensus 90 ~~a~~~ 95 (115)
T 2dgo_A 90 NWATRK 95 (115)
T ss_dssp EESSCC
T ss_pred EEccCC
Confidence 998654
No 113
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6.7e-15 Score=121.27 Aligned_cols=80 Identities=23% Similarity=0.276 Sum_probs=73.9
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHHhcccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~ 330 (443)
+...++|||+|||..+|+++|+++|++||.|.+|+++.++. .++|||||+|.+. ++|.+|+++++..+.|++|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE-QSVDQAVNMHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSH-HHHHHHHHHCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCH-HHHHHHHHhCCCEECCeEEEEEE
Confidence 34679999999999999999999999999999999998864 4789999999999 99999999999999999999999
Q ss_pred CCC
Q 013446 331 SKT 333 (443)
Q Consensus 331 S~~ 333 (443)
++.
T Consensus 86 a~~ 88 (99)
T 2dgs_A 86 AEP 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 853
No 114
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.59 E-value=2.4e-15 Score=120.08 Aligned_cols=78 Identities=31% Similarity=0.425 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
.+.++|||+|||.++|+++|+++|++||.|.++.+..++.+ ++|||||+|.+. ++|.+|++ |+|..++|++|+|.+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA-EDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSH-HHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCH-HHHHHHHHHhCCCEECCcEEEEEE
Confidence 46799999999999999999999999999999999887543 689999999999 99999997 999999999999998
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 115
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=6.6e-16 Score=136.51 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=73.1
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
....++|||+|||..+|+++|.++|++||.|.++.+..++. .++|||||+|.+. ++|.+|+. |+|..++|++|.|.
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ-DDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCH-HHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCH-HHHHHHHHHhCCCccCCcEEEEE
Confidence 44678999999999999999999999999999999998763 4689999999999 99999999 99999999999999
Q ss_pred CCC
Q 013446 330 PSK 332 (443)
Q Consensus 330 ~S~ 332 (443)
+++
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 116
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=9.8e-15 Score=122.52 Aligned_cols=80 Identities=21% Similarity=0.324 Sum_probs=72.5
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
+...++|||+|||.++|+++|+++|++||.|..|.+..+. .++|||||+|.+. ++|++|++ |++..+.|++|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR-GGPPFAFVEFEDP-RDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS-SSSCCEEEEESCH-HHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcEEEEEECCH-HHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3456999999999999999999999999999999997653 4789999999999 99999997 9999999999999998
Q ss_pred CCC
Q 013446 332 KTA 334 (443)
Q Consensus 332 ~~~ 334 (443)
+..
T Consensus 97 ~~~ 99 (109)
T 1x4a_A 97 RSG 99 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 643
No 117
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=127.22 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=75.1
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
.....++|||+|||.++|+++|+++|++||.|.+|++..+++.++|||||+|.+. ++|.+|+. |+|..++|++|.|.+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~-~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS-ADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCS-HHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCH-HHHHHHHHHcCCCEECCEEEEEEE
Confidence 3446799999999999999999999999999999999998877899999999999 99999999 999999999999999
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
++
T Consensus 104 a~ 105 (109)
T 2err_A 104 AT 105 (109)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 118
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.59 E-value=5.5e-15 Score=125.24 Aligned_cols=81 Identities=19% Similarity=0.387 Sum_probs=74.0
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
..+.++|||+|||+++|+++|+++|+.||.|.+|+++.++. .++|||||+|.+. ++|++|++ |++..+.|++|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP-VSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSH-HHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCH-HHHHHHHHHcCCCEECCEEEEEE
Confidence 34568999999999999999999999999999999998863 4689999999999 99999997 99999999999999
Q ss_pred CCCCC
Q 013446 330 PSKTA 334 (443)
Q Consensus 330 ~S~~~ 334 (443)
+++..
T Consensus 101 ~a~~~ 105 (115)
T 2cpz_A 101 LKRSK 105 (115)
T ss_dssp CCCCS
T ss_pred EcCCC
Confidence 98643
No 119
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.59 E-value=3.9e-15 Score=118.34 Aligned_cols=76 Identities=22% Similarity=0.376 Sum_probs=71.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 256 ~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
+.+|||+|||.++|+++|+++|++||.|.++.+..++. .++|||||+|.+. ++|.+|+. |+|..++|++|+|.+++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~-~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ-DDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCH-HHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCH-HHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 37899999999999999999999999999999998764 4689999999999 99999999 99999999999999985
No 120
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.8e-15 Score=125.99 Aligned_cols=81 Identities=15% Similarity=0.352 Sum_probs=74.3
Q ss_pred ccceeeeeeCCCCCCCHHHHH---HHhhhcCCceEEEEEeccCC-----CCceEEEEEeCCHHHHHHHHh-hCCceeCCe
Q 013446 352 MCARTIYCTNIDKKVTQADVK---LFFESVCGEVYRLRLLGDYH-----HSTRIAFVEFVMAESAIAALN-CSGVVLGSL 422 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~---elF~~~fG~V~~vrI~~d~~-----~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr 422 (443)
...++|||+|||+.+|+++|+ ++|++ ||.|..+.|+++.. .++|||||+|.+.++|.+|+. |||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~-~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGK-FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTT-TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhc-cCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 345799999999999999999 99999 99999999988763 567999999999999999999 999999999
Q ss_pred eeEEeecCCCC
Q 013446 423 PIRVSPSKTPV 433 (443)
Q Consensus 423 ~L~V~~Ak~~~ 433 (443)
+|+|+||++..
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998653
No 121
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.59 E-value=8.2e-15 Score=121.87 Aligned_cols=80 Identities=26% Similarity=0.379 Sum_probs=73.2
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH-hcccccCC---ccee
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN-LAGTMLGF---YPVR 327 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-lng~~l~G---r~I~ 327 (443)
....++|||+|||..+|+++|+++|+.||.|.+|+++.++ +.++|||||+|.+. ++|.+|++ |+|..+.| ++|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~-~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSH-TEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSH-HHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCH-HHHHHHHHHHcCCccCCCCCccEE
Confidence 3457999999999999999999999999999999999886 34689999999999 99999998 99999988 9999
Q ss_pred ecCCCC
Q 013446 328 VLPSKT 333 (443)
Q Consensus 328 V~~S~~ 333 (443)
|.+++.
T Consensus 91 V~~a~~ 96 (105)
T 2dnh_A 91 VKFADT 96 (105)
T ss_dssp EEESCS
T ss_pred EEECcc
Confidence 999864
No 122
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.59 E-value=1e-15 Score=159.47 Aligned_cols=80 Identities=15% Similarity=0.279 Sum_probs=74.9
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
...++|||+|||+.+|+++|.++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+||. |||..|+|+.|.|.|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44689999999999999999999999 9999999999874 7889999999999999999998 999999999999999
Q ss_pred cCCC
Q 013446 429 SKTP 432 (443)
Q Consensus 429 Ak~~ 432 (443)
+++.
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 9864
No 123
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=125.88 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCC--eeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hccc----ccCCc
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQ--VVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGT----MLGFY 324 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~--I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~----~l~Gr 324 (443)
..-.||||+|||+.+|+++|+++|++||. +.+|++++|+. .++|||||+|.+. ++|.+|++ |+|. .++|+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~-~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSA-MDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSS-HHHHHHHHHHHSSSSCEEETTE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCH-HHHHHHHHHhcCCCCCceECCE
Confidence 34589999999999999999999999995 67899998874 4799999999999 99999999 9986 48999
Q ss_pred ceeecCCC
Q 013446 325 PVRVLPSK 332 (443)
Q Consensus 325 ~I~V~~S~ 332 (443)
+|.|.+++
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99999985
No 124
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.59 E-value=2.7e-15 Score=128.99 Aligned_cols=83 Identities=23% Similarity=0.257 Sum_probs=75.8
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
...++|||+|||..+|+++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..|+|+.|+|+|
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34689999999999999999999999 9999999998875 6889999999999999999998 999999999999999
Q ss_pred cCCCCCC
Q 013446 429 SKTPVRP 435 (443)
Q Consensus 429 Ak~~~~~ 435 (443)
|++...+
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9754333
No 125
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.1e-15 Score=122.40 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=72.9
Q ss_pred CCcEEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 255 IRRTVYVSDIDQQVTEEQLA----ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~----e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
+.++|||+|||+.+|+++|+ ++|++||.|.+|++..|+.+ +|||||+|.+. ++|.+|++ |+|..++|++|+|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~-~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENL-QDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSH-HHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCH-HHHHHHHHHhCCCEECCeEEEEE
Confidence 46899999999999999999 99999999999999998877 89999999999 99999999 99999999999999
Q ss_pred CCCC
Q 013446 330 PSKT 333 (443)
Q Consensus 330 ~S~~ 333 (443)
+++.
T Consensus 86 ~a~~ 89 (96)
T 2dgx_A 86 LATG 89 (96)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 9853
No 126
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.7e-15 Score=123.10 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=74.0
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
..+.++|||+|||..+|+++|+++|++||.|.+|.+..++. .++|||||+|.+. ++|.+|+. |+|..+.|++|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR-EDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSH-HHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCH-HHHHHHHHHcCCCeeCCcEEEEE
Confidence 44679999999999999999999999999999999998763 4689999999999 99999999 99999999999999
Q ss_pred CCCC
Q 013446 330 PSKT 333 (443)
Q Consensus 330 ~S~~ 333 (443)
+++.
T Consensus 91 ~a~~ 94 (103)
T 2cq0_A 91 WAKP 94 (103)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9864
No 127
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.59 E-value=3e-15 Score=138.59 Aligned_cols=81 Identities=20% Similarity=0.382 Sum_probs=74.5
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
....++|||+|||.++|+++|+++|++||.|.+|++..++ +.++|||||+|.+. ++|.+|+. |+|..++|++|.|.
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~-~~A~~A~~~l~g~~~~g~~i~V~ 200 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKA-QSSQDAVSSMNLFDLGGQYLRVG 200 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSH-HHHHHHHHHHTTCBCSSSBCEEE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCH-HHHHHHHHHccCCEeCCcEEEEE
Confidence 3467899999999999999999999999999999999886 34689999999999 99999999 99999999999999
Q ss_pred CCCCC
Q 013446 330 PSKTA 334 (443)
Q Consensus 330 ~S~~~ 334 (443)
++...
T Consensus 201 ~a~~~ 205 (216)
T 2qfj_A 201 KAVTP 205 (216)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98654
No 128
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.6e-15 Score=123.37 Aligned_cols=80 Identities=20% Similarity=0.142 Sum_probs=72.9
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
...++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+. |||..|+|++|+|++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTT-SCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34689999999999999999999999 9999877776654 6889999999999999999998 999999999999999
Q ss_pred cCCC
Q 013446 429 SKTP 432 (443)
Q Consensus 429 Ak~~ 432 (443)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 129
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.6e-15 Score=121.45 Aligned_cols=78 Identities=26% Similarity=0.322 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
...++|||+|||..+|+++|+++|++||.|.+|++..++. .++|||||+|.+. ++|.+|++ |+|..+.|++|+|.+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK-DSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCH-HHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCH-HHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3568999999999999999999999999999999998764 4789999999999 99999998 999999999999998
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 130
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.59 E-value=8.2e-15 Score=130.85 Aligned_cols=82 Identities=20% Similarity=0.230 Sum_probs=76.1
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
...++|||+|||..+|+++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..|.|+.|+|+|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSK-SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45689999999999999999999999 9999999999876 6789999999999999999999 999999999999999
Q ss_pred cCCCCC
Q 013446 429 SKTPVR 434 (443)
Q Consensus 429 Ak~~~~ 434 (443)
|++...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 986543
No 131
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=6.6e-16 Score=125.01 Aligned_cols=81 Identities=23% Similarity=0.336 Sum_probs=70.2
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.+ |.+|+. |||..++|+.|+|++|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQ-FGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHH-HTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHh-cCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999999999999999999 9999999999876 788999999999999 999999 999999999999999987
Q ss_pred CCCCCC
Q 013446 432 PVRPRA 437 (443)
Q Consensus 432 ~~~~~~ 437 (443)
...+..
T Consensus 80 ~~~~~~ 85 (90)
T 2ki2_A 80 KKSLEH 85 (90)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 654444
No 132
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=9e-15 Score=118.55 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=71.0
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
...++|||+|||..+|+++|+++|++ ||.|..+.++ +|||||+|.+.++|.+|+. |||..++|++|+|+|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQ-YGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHT-SSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 34689999999999999999999999 9999999996 6899999999999999998 99999999999999998
Q ss_pred CCCCC
Q 013446 431 TPVRP 435 (443)
Q Consensus 431 ~~~~~ 435 (443)
+...+
T Consensus 79 ~~~~~ 83 (90)
T 2dnq_A 79 NKSKA 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76443
No 133
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.58 E-value=5.4e-15 Score=124.42 Aligned_cols=76 Identities=22% Similarity=0.343 Sum_probs=70.0
Q ss_pred cceeeeeeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 353 CARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 353 ~~~tIfV~NLp~~-~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
..++|||+|||.. +|+++|+++|++ ||.|..|.+ ++|||||+|.+.++|.+|++ |+|..++|++|+|+|++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~-~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSK-YGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGG-GSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4589999999999 999999999999 999999988 47999999999999999998 99999999999999998
Q ss_pred CCCCC
Q 013446 431 TPVRP 435 (443)
Q Consensus 431 ~~~~~ 435 (443)
++...
T Consensus 99 ~~~~~ 103 (110)
T 1wf1_A 99 EPKPD 103 (110)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 65433
No 134
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=1.8e-15 Score=118.25 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=69.4
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeec
Q 013446 356 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429 (443)
Q Consensus 356 tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~A 429 (443)
+|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++++|..++|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQ-FGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHT-TSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 5899999999999999999999 9999999998875 68999999999999999999999999999999999986
No 135
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=7.6e-15 Score=122.31 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=74.1
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecC-C--CCCceEEEEEEcChHHHHHHHHH-h-cccccCCcce
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD-P--NSVLRFAFIEFTDEAEGARAALN-L-AGTMLGFYPV 326 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~d-k--~~skG~aFVeF~t~~e~A~~Al~-l-ng~~l~Gr~I 326 (443)
.+...++|||+|||+.+|+++|+++|+.||.|.+|+++.+ + +.++|||||+|.+. ++|.+|+. | ++..+.|++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~-~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITK-QDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSH-HHHHHHHHHHHTCCBSSSCBC
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCH-HHHHHHHHHhccCCeECCCEE
Confidence 3456799999999999999999999999999999999988 3 45799999999999 99999998 8 8999999999
Q ss_pred eecCCCC
Q 013446 327 RVLPSKT 333 (443)
Q Consensus 327 ~V~~S~~ 333 (443)
.|.+++.
T Consensus 90 ~v~~a~~ 96 (107)
T 2cph_A 90 VLEWADS 96 (107)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9999864
No 136
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.58 E-value=3.9e-15 Score=119.38 Aligned_cols=77 Identities=25% Similarity=0.416 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
+.++|||+|||.++|+++|+++|++||.|.+|++..++ +.++|||||+|.+. ++|.+|+. |+|..++|++|+|.++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK-WDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH-HHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCH-HHHHHHHHHcCCCEECCeEEEEEec
Confidence 56899999999999999999999999999999999875 44689999999999 99999999 9999999999999998
Q ss_pred C
Q 013446 332 K 332 (443)
Q Consensus 332 ~ 332 (443)
+
T Consensus 84 ~ 84 (87)
T 3bs9_A 84 T 84 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 137
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.58 E-value=4.6e-15 Score=124.49 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=69.2
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCc--eeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGV--VLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~--~l~Gr~L~V~~ 428 (443)
.++++|||+|||+.+|+++|+++|++ ||.|.++++++ .||||||+|.+.++|.+|++ |+|. .+.|++|+|+|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~-fG~V~~v~i~~----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQE-FGPISYVVVMP----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 45689999999999999999999999 99999999975 47999999999999999999 8875 48999999999
Q ss_pred cCCC
Q 013446 429 SKTP 432 (443)
Q Consensus 429 Ak~~ 432 (443)
|++.
T Consensus 94 S~~k 97 (100)
T 3r27_A 94 STSQ 97 (100)
T ss_dssp CSCS
T ss_pred cccc
Confidence 9853
No 138
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.58 E-value=3.8e-15 Score=124.75 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=73.7
Q ss_pred ccceeeeeeCCCCCC------CHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCe-e
Q 013446 352 MCARTIYCTNIDKKV------TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSL-P 423 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~------TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr-~ 423 (443)
...++|||+|||..+ |+++|+++|++ ||.|..+.+++..+.++|||||+|.+.++|.+|+. |||..++|+ +
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGG-GSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhc-CCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 346899999999999 78999999999 99999999986668899999999999999999999 999999998 9
Q ss_pred eEEeecCCC
Q 013446 424 IRVSPSKTP 432 (443)
Q Consensus 424 L~V~~Ak~~ 432 (443)
|+|.++..-
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999999753
No 139
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=121.63 Aligned_cols=79 Identities=23% Similarity=0.253 Sum_probs=71.0
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-h--CCceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-C--SGVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-l--nG~~l~Gr~L~V~~ 428 (443)
.++++|||+|||..+|+++|+++|++ ||.|..+.++++ +|||||+|.+.++|.+|++ | ++..+.|++|+|+|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~-fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLP-FGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 45689999999999999999999999 999999999765 7999999999999999998 6 57889999999999
Q ss_pred cCCCCCC
Q 013446 429 SKTPVRP 435 (443)
Q Consensus 429 Ak~~~~~ 435 (443)
|++....
T Consensus 88 a~~~~~~ 94 (101)
T 2cq1_A 88 SNHKELK 94 (101)
T ss_dssp CSCSSCC
T ss_pred cCcccCc
Confidence 9865433
No 140
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=8.2e-15 Score=120.59 Aligned_cols=80 Identities=25% Similarity=0.315 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
.+.++|||+|||.++|+++|+++|+.||.|.+|++..++ +.++|||||+|.+. ++|.+|+. |+|..+.|++|.|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFP-EHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSH-HHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCH-HHHHHHHHHhCCCEECCcEEEEEE
Confidence 457999999999999999999999999999999999886 34789999999999 99999997 999999999999999
Q ss_pred CCCC
Q 013446 331 SKTA 334 (443)
Q Consensus 331 S~~~ 334 (443)
++..
T Consensus 85 a~~~ 88 (99)
T 1whw_A 85 STIK 88 (99)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8643
No 141
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.2e-15 Score=121.87 Aligned_cols=80 Identities=31% Similarity=0.423 Sum_probs=73.8
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
....++|||+|||+.+|+++|+++|++||.|.+|.++.++ +.++|||||+|.+. ++|.+|+. |+|..+.|++|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE-EDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSH-HHHHHHHHHSSSCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCH-HHHHHHHHHhCCCeECCeEEEEE
Confidence 3467999999999999999999999999999999999876 34789999999999 99999999 99999999999999
Q ss_pred CCCC
Q 013446 330 PSKT 333 (443)
Q Consensus 330 ~S~~ 333 (443)
+++.
T Consensus 91 ~a~~ 94 (105)
T 1x5u_A 91 KASA 94 (105)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 9853
No 142
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=117.42 Aligned_cols=78 Identities=22% Similarity=0.306 Sum_probs=71.0
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
...++|||+|||..+|+++|+++|++ ||.|..+.+++ +||||+|.+.++|.+|+. |||..+.|+.|+|+|++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEE-YGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHT-TSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45689999999999999999999999 99999999964 499999999999999998 99999999999999998
Q ss_pred CCCCCC
Q 013446 431 TPVRPR 436 (443)
Q Consensus 431 ~~~~~~ 436 (443)
+...+.
T Consensus 81 ~~~~~~ 86 (92)
T 2dgt_A 81 SRLRTA 86 (92)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 764433
No 143
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.58 E-value=1.3e-15 Score=135.36 Aligned_cols=154 Identities=19% Similarity=0.272 Sum_probs=102.0
Q ss_pred CCcchhhHHHHHHHHhccCCccccccCCccCccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCcchhccccCCCCCC
Q 013446 159 GGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSFGQG 238 (443)
Q Consensus 159 ~~~~~~~~~eL~elfs~~gpla~~~~PP~~~~a~~~~~~~~~~~gg~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~f~~g 238 (443)
+.|+..+.++|.++|++||++..+.++....+...-++++..+. ... ........-+...-+
T Consensus 10 nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~-----~~~-------------~A~~a~~~l~~~~~~ 71 (168)
T 1b7f_A 10 YLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFT-----SEM-------------DSQRAIKVLNGITVR 71 (168)
T ss_dssp CCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEES-----SHH-------------HHHHHHHHHTTCEET
T ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEEC-----CHH-------------HHHHHHHhcCCCEeC
Confidence 37888899999999999999999888765432211011111110 000 000000000000000
Q ss_pred CCCCCCCccccccccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-
Q 013446 239 KRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN- 315 (443)
Q Consensus 239 ~~r~~~~~~~~~~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~- 315 (443)
.+...-............++|||+|||..+|+++|+++|++||.|..+.+..++ +.++|||||+|.+. ++|.+|+.
T Consensus 72 g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~-~~A~~A~~~ 150 (168)
T 1b7f_A 72 NKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR-EEAQEAISA 150 (168)
T ss_dssp TEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSH-HHHHHHHHH
T ss_pred CcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHH
Confidence 000000000011123456899999999999999999999999999999999876 34689999999999 99999999
Q ss_pred hcccccCC--cceeecCC
Q 013446 316 LAGTMLGF--YPVRVLPS 331 (443)
Q Consensus 316 lng~~l~G--r~I~V~~S 331 (443)
|+|..+.| ++|+|.++
T Consensus 151 l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 151 LNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HTTCCCTTCSSCCEEEEC
T ss_pred hcCCEecCCCeEEEEEeC
Confidence 99999987 99999864
No 144
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.2e-15 Score=122.84 Aligned_cols=79 Identities=20% Similarity=0.311 Sum_probs=73.3
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
....++|||+|||..+|+++|+++|+.||.|.+|.+..++. .++|||||+|.+. ++|.+|+. |+|..++|++|.|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY-KEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCH-HHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCH-HHHHHHHHHhcCCEECCcEEEEE
Confidence 34679999999999999999999999999999999998874 4689999999999 99999998 99999999999999
Q ss_pred CCC
Q 013446 330 PSK 332 (443)
Q Consensus 330 ~S~ 332 (443)
+++
T Consensus 99 ~a~ 101 (106)
T 1p27_B 99 WCF 101 (106)
T ss_dssp ESE
T ss_pred eec
Confidence 985
No 145
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.8e-15 Score=127.62 Aligned_cols=82 Identities=24% Similarity=0.246 Sum_probs=72.8
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hC--CceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS--GVVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-ln--G~~l~Gr~L~V~~ 428 (443)
.++++|||+|||+.+|+++|+++|++ ||.|.+|+|+++ ||||||+|.+.++|.+|+. ++ +..+.|++|+|+|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~-fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTT-TSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 45689999999999999999999999 999999999876 7999999999999999998 77 4689999999999
Q ss_pred cCCCCCCCCC
Q 013446 429 SKTPVRPRAP 438 (443)
Q Consensus 429 Ak~~~~~~~p 438 (443)
|++....+..
T Consensus 104 a~~k~~~~~~ 113 (119)
T 2ad9_A 104 SNHKELKTDS 113 (119)
T ss_dssp CSSSSCCCCC
T ss_pred ccCCCCCccc
Confidence 9865444443
No 146
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.2e-15 Score=124.76 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=69.8
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hc--ccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LA--GTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-ln--g~~l~Gr~I~V~ 329 (443)
+.+.++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+. ++|..|++ ++ +..+.|++|.|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~-~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTE-EAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSH-HHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCH-HHHHHHHHHhccCCceECCEEEEEE
Confidence 446799999999999999999999999999999999976 58999999999 99999998 76 478999999999
Q ss_pred CCCCC
Q 013446 330 PSKTA 334 (443)
Q Consensus 330 ~S~~~ 334 (443)
+++..
T Consensus 88 ~A~~~ 92 (105)
T 1sjq_A 88 FSNHK 92 (105)
T ss_dssp CCSSS
T ss_pred EcCCC
Confidence 98643
No 147
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=9e-15 Score=120.71 Aligned_cols=79 Identities=20% Similarity=0.353 Sum_probs=73.1
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
+.+.++|||+|||..+|+++|+++|++||.|.+|++..++ +.++|||||+|.+. ++|.+|++ |+|..+.|++|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENE-SQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSH-HHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCH-HHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999887 34689999999999 99999997 999999999999999
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
++
T Consensus 93 a~ 94 (100)
T 2do4_A 93 SN 94 (100)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 148
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.58 E-value=9.2e-15 Score=124.87 Aligned_cols=80 Identities=21% Similarity=0.354 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
...++|||+|||.++|+++|+++|++||.|.+|.+..++ +.++|||||+|.+. ++|++|+. |+|..+.|++|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~-~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENP-ADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSH-HHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCH-HHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456999999999999999999999999999999999887 44789999999999 99999998 9999999999999998
Q ss_pred CCC
Q 013446 332 KTA 334 (443)
Q Consensus 332 ~~~ 334 (443)
+..
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
No 149
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=121.85 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=71.0
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCC-----eeeEE
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGS-----LPIRV 426 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~G-----r~L~V 426 (443)
..++|||+|||+.+|+++|+++|++ ||.|..+.|+.+ |||||+|.+.++|.+|++ |||..|.| +.|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 4589999999999999999999999 999999999876 899999999999999999 99999999 99999
Q ss_pred eecCCCCC
Q 013446 427 SPSKTPVR 434 (443)
Q Consensus 427 ~~Ak~~~~ 434 (443)
++|++..+
T Consensus 88 ~~a~~~~~ 95 (108)
T 1x4c_A 88 KVDGPRSP 95 (108)
T ss_dssp EESSCCSC
T ss_pred EeCCCCCC
Confidence 99987533
No 150
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.57 E-value=1.4e-14 Score=123.03 Aligned_cols=80 Identities=23% Similarity=0.406 Sum_probs=72.9
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceee
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRV 328 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V 328 (443)
.+.+.++|||+|||+++|+++|+++|++||.|.+|+++.++. .++|||||+|.+. ++|.+|++ |+|..++|++|+|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNP-DSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESS-HHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCH-HHHHHHHHHcCCCEECCEEEEE
Confidence 344679999999999999999999999999999999998764 5799999999999 99999998 9999999999999
Q ss_pred cCCC
Q 013446 329 LPSK 332 (443)
Q Consensus 329 ~~S~ 332 (443)
.+++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 8863
No 151
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=117.87 Aligned_cols=78 Identities=23% Similarity=0.301 Sum_probs=73.2
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecCC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak~ 431 (443)
..++|||+|||..+|+++|+++|++ | .|..++++.+. +.++|||||+|.+.++|.+|+.|||..++|+.|+|.++++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~-~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAP-L-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTT-S-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhh-C-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCc
Confidence 4589999999999999999999999 8 89999999875 7889999999999999999999999999999999999976
Q ss_pred C
Q 013446 432 P 432 (443)
Q Consensus 432 ~ 432 (443)
.
T Consensus 87 ~ 87 (91)
T 2dgw_A 87 G 87 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 152
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.4e-15 Score=122.95 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=73.8
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCc-eEEEEEe-ccC--CCCceEEEEEeCCHHHHHHHHh-hC--CceeCCeeeE
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGE-VYRLRLL-GDY--HHSTRIAFVEFVMAESAIAALN-CS--GVVLGSLPIR 425 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~-V~~vrI~-~d~--~~srGfAFVeF~t~e~A~~Al~-ln--G~~l~Gr~L~ 425 (443)
..++|||+|||..+|+++|+++|++ ||. |..+.++ .+. +.++|||||+|.+.++|.+|+. |+ +..++|+.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAK-VTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHH-HSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHH-hcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 4589999999999999999999999 898 9999998 555 5899999999999999999999 95 5999999999
Q ss_pred EeecCCCCCC
Q 013446 426 VSPSKTPVRP 435 (443)
Q Consensus 426 V~~Ak~~~~~ 435 (443)
|+||++...+
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999865443
No 153
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.57 E-value=3.1e-15 Score=122.06 Aligned_cols=78 Identities=21% Similarity=0.153 Sum_probs=71.1
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
..++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+. |||..++|++|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTT-SCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 4589999999999999999999999 9999888777654 6889999999999999999999 9999999999999998
Q ss_pred CC
Q 013446 430 KT 431 (443)
Q Consensus 430 k~ 431 (443)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 154
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.57 E-value=8e-15 Score=120.95 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=72.8
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeE--------EEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccc
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD--------CRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTM 320 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~--------v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~ 320 (443)
.+...++|||+|||.++|+++|+++|++||.|.+ +++..++. .++|||||+|.+. ++|.+|++ |+|..
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~-~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDP-PSAKAAIDWFDGKE 87 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSH-HHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCH-HHHHHHHHHhCCCE
Confidence 3456799999999999999999999999999999 99998764 4689999999999 99999998 99999
Q ss_pred cCCcceeecCC
Q 013446 321 LGFYPVRVLPS 331 (443)
Q Consensus 321 l~Gr~I~V~~S 331 (443)
++|++|+|.++
T Consensus 88 ~~g~~l~V~~A 98 (99)
T 2la6_A 88 FSGNPIKVSFA 98 (99)
T ss_dssp SSSSBCEEEEC
T ss_pred eCCcEEEEEec
Confidence 99999999886
No 155
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.57 E-value=6.8e-15 Score=132.61 Aligned_cols=78 Identities=21% Similarity=0.228 Sum_probs=72.7
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCC--ceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG--~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
..++|||+|||+.+|+++|+++|++ || .|..|+|+.|. +.++|||||+|.+.++|.+|+. |||..|+|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRS-IGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4579999999999999999999999 99 99999999885 7899999999999999999999 99999999999999
Q ss_pred ecCC
Q 013446 428 PSKT 431 (443)
Q Consensus 428 ~Ak~ 431 (443)
+|++
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 9864
No 156
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.57 E-value=7e-15 Score=120.64 Aligned_cols=77 Identities=34% Similarity=0.465 Sum_probs=72.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 256 ~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
+++|||+|||..+|+++|+++|++||.|.+|++..++ +.++|||||+|.+. ++|.+|++ |+|..++|++|.|.+++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDL-ESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSH-HHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCH-HHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5899999999999999999999999999999999886 35799999999999 99999998 99999999999999985
Q ss_pred C
Q 013446 333 T 333 (443)
Q Consensus 333 ~ 333 (443)
.
T Consensus 81 ~ 81 (96)
T 2x1f_A 81 N 81 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 157
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.4e-14 Score=118.05 Aligned_cols=78 Identities=26% Similarity=0.392 Sum_probs=71.0
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcC--CceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVC--GEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~f--G~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
....++|||+|||..+|+++|+++|++ | |.|..++++ +|||||+|.+.++|.+|+. |||..++|++|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNN-IKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHT-TSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 345689999999999999999999999 9 899999874 5799999999999999999 99999999999999
Q ss_pred ecCCCCCC
Q 013446 428 PSKTPVRP 435 (443)
Q Consensus 428 ~Ak~~~~~ 435 (443)
|+++....
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpd_A 85 LAKPVDKD 92 (99)
T ss_dssp CCCCCCCC
T ss_pred ECCCCCCC
Confidence 99876443
No 158
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=117.56 Aligned_cols=77 Identities=22% Similarity=0.275 Sum_probs=70.6
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
...++|||+|||..+|+++|+++|++ ||.|..+++++ +||||+|.+.++|.+|+. |||..++|++|+|++++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFER-RGRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHH-HSCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHc-CCCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 34689999999999999999999999 99999999964 499999999999999999 99999999999999998
Q ss_pred CCCCC
Q 013446 431 TPVRP 435 (443)
Q Consensus 431 ~~~~~ 435 (443)
+....
T Consensus 80 ~~~~~ 84 (90)
T 2dnp_A 80 KGQKK 84 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76433
No 159
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.57 E-value=2.7e-15 Score=130.61 Aligned_cols=82 Identities=17% Similarity=0.201 Sum_probs=75.2
Q ss_pred ccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEE--EEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCc----eeC
Q 013446 350 REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYR--LRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGV----VLG 420 (443)
Q Consensus 350 ~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~--vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~----~l~ 420 (443)
.....++|||+|||+.+|+++|+++|++ ||.|.. |+|++|. +.++|||||+|.+. +|.+|+. |||. .++
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAP-YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGG-GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 3456789999999999999999999999 999977 9999886 78999999999999 9999999 9999 999
Q ss_pred CeeeEEeecCCCC
Q 013446 421 SLPIRVSPSKTPV 433 (443)
Q Consensus 421 Gr~L~V~~Ak~~~ 433 (443)
|++|+|+++++..
T Consensus 97 gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 97 GKTINVEFAKGSK 109 (131)
T ss_dssp GCCCCCEECCCSC
T ss_pred CEEEEEEECCCCC
Confidence 9999999998653
No 160
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=4.1e-15 Score=123.01 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=70.8
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCCCC
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPV 433 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~~~ 433 (443)
++|||+|||..+|+++|+++|++ ||.|..+.++.+ ++|||||+|.+.++|.+|+. |+|..++|+.|+|+|+++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSY-YGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHH-HCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 48999999999999999999999 999999999887 78999999999999999999 99999999999999998654
No 161
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9e-15 Score=123.56 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=74.3
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCcee--------CC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVL--------GS 421 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l--------~G 421 (443)
...++|||+|||..+|+++|+++|++ ||.|..++|+.+. +.++|||||+|.+.++|.+|+. |||..+ .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKP-FGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 45689999999999999999999999 9999999999886 6889999999999999999999 999999 68
Q ss_pred eeeEEeecCCC
Q 013446 422 LPIRVSPSKTP 432 (443)
Q Consensus 422 r~L~V~~Ak~~ 432 (443)
++|+|.||+|+
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999865
No 162
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.8e-15 Score=126.58 Aligned_cols=80 Identities=20% Similarity=0.093 Sum_probs=74.1
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCce-EEEEEeccC-CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeec
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEV-YRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V-~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~A 429 (443)
...++|||+|||+.+|+++|+++|++ ||.| ..|+|+.|. +.++|||||+|.+.++|.+|+.+|+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEG-IPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTT-SCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHh-CCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 44689999999999999999999999 8999 889998887 78999999999999999999999999999999999999
Q ss_pred CCC
Q 013446 430 KTP 432 (443)
Q Consensus 430 k~~ 432 (443)
.+.
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 163
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.57 E-value=5.2e-15 Score=117.78 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=67.1
Q ss_pred CcEEEEcCCCCCC------cHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCc-cee
Q 013446 256 RRTVYVSDIDQQV------TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFY-PVR 327 (443)
Q Consensus 256 ~~tLfVgNLp~~t------TeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr-~I~ 327 (443)
+++|||+|||..+ |+++|+++|++||.|.+|.+.++.+.++|||||+|.+. ++|.+|+. |+|..++|+ +|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~-~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASP-AHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSH-HHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCH-HHHHHHHHHhcCcccCCceeEE
Confidence 3799999999999 88999999999999999998865567899999999999 99999999 999999999 888
Q ss_pred ec
Q 013446 328 VL 329 (443)
Q Consensus 328 V~ 329 (443)
|.
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 73
No 164
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=122.57 Aligned_cols=80 Identities=26% Similarity=0.389 Sum_probs=73.9
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceee
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRV 328 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V 328 (443)
.+.+.++|||+|||..+|+++|+++|++||.|.+|+++.++. .++|||||+|.+. ++|.+|++ |+|..++|++|+|
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~-~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS-ECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCH-HHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH-HHHHHHHHHcCCCEECCEEEEE
Confidence 445679999999999999999999999999999999998764 4689999999999 99999998 9999999999999
Q ss_pred cCCC
Q 013446 329 LPSK 332 (443)
Q Consensus 329 ~~S~ 332 (443)
.+++
T Consensus 101 ~~a~ 104 (108)
T 2jrs_A 101 GHVT 104 (108)
T ss_dssp ECSC
T ss_pred EEcc
Confidence 9985
No 165
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.57 E-value=1.7e-14 Score=119.94 Aligned_cols=79 Identities=23% Similarity=0.372 Sum_probs=71.3
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
...++|||+|||..+|+++|+++|++ ||.|..+.++ ++||||+|.+.++|.+|+. |||..|.|+.|+|.|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQ-FGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHH-HSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 34689999999999999999999999 9999999986 4699999999999999999 99999999999999998
Q ss_pred CCCCCCC
Q 013446 431 TPVRPRA 437 (443)
Q Consensus 431 ~~~~~~~ 437 (443)
+....+.
T Consensus 82 ~~~~~~~ 88 (103)
T 2dgu_A 82 PPDQKRK 88 (103)
T ss_dssp CCCCCCC
T ss_pred CCcccch
Confidence 6554433
No 166
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.4e-15 Score=124.24 Aligned_cols=79 Identities=32% Similarity=0.542 Sum_probs=74.3
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeec
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~A 429 (443)
...++|||+|||..+|+++|+++|++ ||.|..|+|+.+. +.++|||||+|.+.++|.+|+.|||..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSA-VGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 45689999999999999999999999 9999999999876 68899999999999999999999999999999999999
Q ss_pred CC
Q 013446 430 KT 431 (443)
Q Consensus 430 k~ 431 (443)
++
T Consensus 102 ~~ 103 (114)
T 2cq4_A 102 QA 103 (114)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 167
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=4.6e-15 Score=124.81 Aligned_cols=77 Identities=21% Similarity=0.265 Sum_probs=69.6
Q ss_pred ccceeeeeeCCCC-CCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCC--ceeCCeeeEEe
Q 013446 352 MCARTIYCTNIDK-KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSG--VVLGSLPIRVS 427 (443)
Q Consensus 352 ~~~~tIfV~NLp~-~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG--~~l~Gr~L~V~ 427 (443)
.++++|||+|||+ .+|+++|+++|++ ||.|.+|+|+++ +|||||+|.+.++|.+|++ ||+ ..|.|++|+|+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~-fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEP-FGVISNHLILNK----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGG-GSCEEEEEECSS----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHh-cCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 3568999999999 9999999999999 999999999765 5899999999999999998 875 56999999999
Q ss_pred ecCCCC
Q 013446 428 PSKTPV 433 (443)
Q Consensus 428 ~Ak~~~ 433 (443)
||++..
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 998643
No 168
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.56 E-value=1.4e-14 Score=122.21 Aligned_cols=81 Identities=20% Similarity=0.209 Sum_probs=72.0
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEee
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 428 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~ 428 (443)
....++|||+|||..+|+++|+++|++ ||.|..|+++.+. +.++|||||+|.+.++|.+|+...|..++|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHc-cCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 345689999999999999999999999 9999999999876 7899999999999999999999446999999999999
Q ss_pred cCCC
Q 013446 429 SKTP 432 (443)
Q Consensus 429 Ak~~ 432 (443)
+.+.
T Consensus 101 a~~~ 104 (109)
T 2rs2_A 101 AFPR 104 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9854
No 169
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.56 E-value=8e-15 Score=120.03 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=68.2
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
+.-|||+||++.+|+++|+++|.+ ||+|.++.+.. ++|||||+|.+.++|.+|+. |||..++|++|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q-~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQ-HGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHH-HSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHh-hCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 578999999999999999999999 89999999954 68999999999999999999 99999999999999984
No 170
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.9e-15 Score=120.93 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=72.3
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
..++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+. |||..+.|+.|+++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQP-YGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTT-TSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4589999999999999999999999 9999999998875 6889999999999999999999 9999999999999886
Q ss_pred C
Q 013446 430 K 430 (443)
Q Consensus 430 k 430 (443)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 171
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-14 Score=121.32 Aligned_cols=80 Identities=23% Similarity=0.305 Sum_probs=73.8
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hc------ccccCC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LA------GTMLGF 323 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-ln------g~~l~G 323 (443)
....++|||+|||+.+|+++|+++|+.||.|.+|+++.|+. .++|||||+|.+. ++|.+|+. ++ +..+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQ-EAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSH-HHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCH-HHHHHHHHHhccccccCCcEEcC
Confidence 34679999999999999999999999999999999998874 4799999999999 99999998 99 999999
Q ss_pred cceeecCCCC
Q 013446 324 YPVRVLPSKT 333 (443)
Q Consensus 324 r~I~V~~S~~ 333 (443)
++|.|.++..
T Consensus 91 ~~l~v~~a~~ 100 (111)
T 1x4h_A 91 RQLKVDLAVT 100 (111)
T ss_dssp CEEEEECCCC
T ss_pred EEEEEEECCC
Confidence 9999999853
No 172
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.56 E-value=8.5e-15 Score=122.19 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=72.7
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
....++|||+|||+.+|+++|+++|++||.|.+|+++.++ +.++|||||+|.+. ++|.+|+. |+|..+.|++|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK-ADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSH-HHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCH-HHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467999999999999999999999999999999999887 34689999999999 99999999 999999999999998
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 63
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.56 E-value=1.6e-15 Score=135.41 Aligned_cols=77 Identities=25% Similarity=0.427 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEEcChHHHHHHHHH-hcccccC---Ccceee
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEAEGARAALN-LAGTMLG---FYPVRV 328 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~-~skG~aFVeF~t~~e~A~~Al~-lng~~l~---Gr~I~V 328 (443)
...++|||+|||..+|+++|+++|++||.|.++++..++. .++|||||+|.+. ++|.+|+. |+|..+. +++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~-~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTR-AMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSH-HHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCH-HHHHHHHHHhcCCcccCCCCCCeEE
Confidence 3568999999999999999999999999999999998763 4699999999999 99999998 9998765 499999
Q ss_pred cCC
Q 013446 329 LPS 331 (443)
Q Consensus 329 ~~S 331 (443)
.++
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 886
No 174
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.1e-15 Score=117.99 Aligned_cols=78 Identities=17% Similarity=0.272 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
.+.++|||+|||+.+|+++|+++|++||.|.+|.+..++ +.++|||||+|.+. ++|.+|++ |+|..+.|+.|++.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSP-SAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCH-HHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCH-HHHHHHHHHhcCCeEeeEEEeecC
Confidence 356999999999999999999999999999999999876 34789999999999 99999999 999999999999887
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
++
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 175
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=119.21 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=70.7
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeC--CeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLG--SLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~--Gr~L~V~~ 428 (443)
...++|||+|||..+|+++|+++|++ ||.|..+.++.+ +|||||+|.+.++|.+|++ |||..+. |++|+|+|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDR-FGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHT-TSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 44689999999999999999999999 999999999654 7899999999999999999 9999999 99999999
Q ss_pred cCCC
Q 013446 429 SKTP 432 (443)
Q Consensus 429 Ak~~ 432 (443)
+++.
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9865
No 176
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.2e-15 Score=119.78 Aligned_cols=78 Identities=23% Similarity=0.439 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEE-EEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDC-RICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v-~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
+.++|||+|||..+|+++|+++|++||.|.++ +++.++ +.++|||||+|.+. ++|.+|+. |+|..+.|++|.|.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF-DASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSH-HHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCH-HHHHHHHHHcCCCEECCEEEEEEE
Confidence 56999999999999999999999999999999 999875 34689999999999 99999999 999999999999999
Q ss_pred CCC
Q 013446 331 SKT 333 (443)
Q Consensus 331 S~~ 333 (443)
+..
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 854
No 177
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.56 E-value=1.2e-14 Score=117.01 Aligned_cols=78 Identities=36% Similarity=0.613 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~ 332 (443)
..++|||+|||+++|+++|+++|+.||.|.++++..++ +.++|||||+|.+. ++|.+|+.++|..+.|++|.|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK-ESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESST-HHHHHHGGGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCH-HHHHHHHhcCCCEECCcEEEEEEcc
Confidence 45899999999999999999999999999999999876 45799999999999 9999999999999999999999985
Q ss_pred C
Q 013446 333 T 333 (443)
Q Consensus 333 ~ 333 (443)
.
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 178
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.56 E-value=3.6e-15 Score=123.94 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCC------CCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCC-
Q 013446 254 IIRRTVYVSDIDQ------QVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGF- 323 (443)
Q Consensus 254 ~~~~tLfVgNLp~------~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~G- 323 (443)
...++|||+|||+ ++++++|+++|++||.|.+|+|+.|+. .++|||||+|.+. ++|.+|+. |+|..+.|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~-~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSM-NDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSH-HHHHHHHHHHTTCBSSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCH-HHHHHHHHHhCCcccCCC
Confidence 3568999999999 999999999999999999999998875 4799999999999 99999998 99999999
Q ss_pred cceeecCCC
Q 013446 324 YPVRVLPSK 332 (443)
Q Consensus 324 r~I~V~~S~ 332 (443)
++|.|.++.
T Consensus 83 r~l~V~~a~ 91 (100)
T 3ns6_A 83 HRLFLYTMK 91 (100)
T ss_dssp CBCEEEESH
T ss_pred eEEEEEECc
Confidence 999999873
No 179
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.5e-14 Score=115.53 Aligned_cols=74 Identities=18% Similarity=0.367 Sum_probs=69.2
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-h-CCceeCCeeeEEeec
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-C-SGVVLGSLPIRVSPS 429 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-l-nG~~l~Gr~L~V~~A 429 (443)
...++|||+|||..+|+++|+++|++ ||.|..++++++ +|||||+|.+.++|.+|+. | +|..++|++|+|+||
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~-~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQ-FGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHT-TSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHh-CCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 34689999999999999999999999 999999999764 7999999999999999999 8 999999999999998
Q ss_pred C
Q 013446 430 K 430 (443)
Q Consensus 430 k 430 (443)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 180
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=9.4e-15 Score=120.23 Aligned_cols=79 Identities=18% Similarity=0.297 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCee-EEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcc----
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVV-DCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYP---- 325 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~-~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~---- 325 (443)
...++|||+|||+.+|+++|+++|++||.|. +|+++.++. .++|||||+|.+. ++|++|++ |+|..+.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADL-ATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCH-HHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCH-HHHHHHHHHHcCCccCCCCccee
Confidence 3569999999999999999999999999999 999998874 4689999999999 99999999 9999999999
Q ss_pred eeecCCCC
Q 013446 326 VRVLPSKT 333 (443)
Q Consensus 326 I~V~~S~~ 333 (443)
|+|.+++.
T Consensus 86 l~v~~a~~ 93 (99)
T 2div_A 86 FKLNYATY 93 (99)
T ss_dssp CCEEETTC
T ss_pred EEEeecCC
Confidence 99998853
No 181
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.56 E-value=1.2e-14 Score=121.08 Aligned_cols=81 Identities=20% Similarity=0.316 Sum_probs=73.7
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hccccc---CCcc
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTML---GFYP 325 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l---~Gr~ 325 (443)
.+...++|||+|||..+|+++|+++|++||.|.+|+++.++. .++|||||+|.+. ++|.+|+. |+|..+ .|++
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCER-ESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSH-HHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCH-HHHHHHHHHhcCCcccCCCCce
Confidence 345679999999999999999999999999999999998764 4789999999999 99999998 999887 8999
Q ss_pred eeecCCCC
Q 013446 326 VRVLPSKT 333 (443)
Q Consensus 326 I~V~~S~~ 333 (443)
|.|.+++.
T Consensus 88 l~v~~a~~ 95 (106)
T 2dgp_A 88 IQVKPADS 95 (106)
T ss_dssp CEEEECCC
T ss_pred EEEEECCc
Confidence 99999853
No 182
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.56 E-value=3.3e-15 Score=118.89 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=67.2
Q ss_pred eeeeeeCCCCCC------CHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCe-eeEE
Q 013446 355 RTIYCTNIDKKV------TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSL-PIRV 426 (443)
Q Consensus 355 ~tIfV~NLp~~~------TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr-~L~V 426 (443)
++|||+|||..+ |+++|+++|++ ||.|..++++++.+.++|||||+|.+.++|.+|+. |||..++|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHT-TCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhh-cCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 78999999999 99999999986668899999999999999999999 999999999 8877
Q ss_pred e
Q 013446 427 S 427 (443)
Q Consensus 427 ~ 427 (443)
+
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 183
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9.1e-15 Score=120.98 Aligned_cols=79 Identities=19% Similarity=0.342 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
.+.++|||+|||+++|+++|+++|++||.|..|+++.++. .++|||||+|.+. ++|.+|++ |++..+.|++|+|.+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENI-DDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSH-HHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCH-HHHHHHHHHhCCCEECCeEEEEEE
Confidence 3569999999999999999999999999999999998764 4789999999999 99999997 999999999999999
Q ss_pred CCC
Q 013446 331 SKT 333 (443)
Q Consensus 331 S~~ 333 (443)
++.
T Consensus 89 a~~ 91 (102)
T 1x5s_A 89 AGK 91 (102)
T ss_dssp EEC
T ss_pred CCC
Confidence 853
No 184
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.5e-14 Score=120.00 Aligned_cols=80 Identities=25% Similarity=0.378 Sum_probs=73.4
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhc-CCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH-hcccc-cCCcceee
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN-LAGTM-LGFYPVRV 328 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~-~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-lng~~-l~Gr~I~V 328 (443)
....++|||+|||+++|+++|+++|++ ||.|.+|+++.++ +.++|||||+|.+. ++|.+|+. |+|.. +.|++|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~-~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDE-LEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCH-HHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCH-HHHHHHHHHccCCcccCCEeEEE
Confidence 346699999999999999999999999 9999999999886 34689999999999 99999999 99999 99999999
Q ss_pred cCCCC
Q 013446 329 LPSKT 333 (443)
Q Consensus 329 ~~S~~ 333 (443)
.++..
T Consensus 85 ~~a~~ 89 (104)
T 2dhg_A 85 SVAIP 89 (104)
T ss_dssp CBCCC
T ss_pred EEccC
Confidence 99853
No 185
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6e-15 Score=123.42 Aligned_cols=83 Identities=18% Similarity=0.157 Sum_probs=75.0
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak 430 (443)
....+|||+|||+.+|+++|+++|++ ||.+ .|+|+.|. +.++|||||+|.+.++|.+|+.+|+..++|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSP-LNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCS-CCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 34589999999999999999999999 9954 99998876 789999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 013446 431 TPVRPR 436 (443)
Q Consensus 431 ~~~~~~ 436 (443)
++....
T Consensus 91 ~~~~~~ 96 (102)
T 1wez_A 91 TAGTSG 96 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 765543
No 186
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2e-14 Score=122.00 Aligned_cols=81 Identities=15% Similarity=0.254 Sum_probs=73.6
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceee
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRV 328 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V 328 (443)
.+...++|||+|||+.+|+++|+++|++||.|.+|+++.++. .++|||||+|.+. ++|++|+. +++ .+.|++|.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR-AAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSH-HHHHHHHTCSSC-EETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCH-HHHHHHHHhCCC-cCCCEEEEE
Confidence 345679999999999999999999999999999999998864 4789999999999 99999999 887 899999999
Q ss_pred cCCCCC
Q 013446 329 LPSKTA 334 (443)
Q Consensus 329 ~~S~~~ 334 (443)
.++...
T Consensus 91 ~~a~~~ 96 (116)
T 2cqd_A 91 NLAYLG 96 (116)
T ss_dssp EESTTT
T ss_pred EEcccC
Confidence 998644
No 187
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.5e-14 Score=120.39 Aligned_cols=80 Identities=25% Similarity=0.355 Sum_probs=73.6
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHHhcccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~ 330 (443)
+...++|||+|||+.+|+++|+++|+.||.|.+|+++.++. .++|||||+|.+. ++|.+|+..++..+.|++|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESST-THHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCH-HHHHHHHHhCCCeECCEEEEEEE
Confidence 44679999999999999999999999999999999998864 4689999999999 99999999899999999999999
Q ss_pred CCC
Q 013446 331 SKT 333 (443)
Q Consensus 331 S~~ 333 (443)
+..
T Consensus 92 a~~ 94 (105)
T 2dh8_A 92 CTP 94 (105)
T ss_dssp SCC
T ss_pred ccC
Confidence 863
No 188
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.55 E-value=1.2e-14 Score=122.82 Aligned_cols=77 Identities=29% Similarity=0.475 Sum_probs=70.8
Q ss_pred cccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 349 EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 349 ~~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
......++|||+|||..+|+++|+++|++ ||.|..+.++ +|||||+|.+.++|.+|+. |||..++|++|+|+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGP-FGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTT-TSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34456789999999999999999999999 9999999996 7999999999999999999 99999999999999
Q ss_pred ecCCC
Q 013446 428 PSKTP 432 (443)
Q Consensus 428 ~Ak~~ 432 (443)
|+++.
T Consensus 99 ~a~~~ 103 (108)
T 2jvo_A 99 YSKLP 103 (108)
T ss_dssp SCSCC
T ss_pred EecCC
Confidence 99865
No 189
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.55 E-value=4.8e-15 Score=115.87 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=68.2
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCC
Q 013446 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS 331 (443)
Q Consensus 258 tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S 331 (443)
+|||+|||+++|+++|+++|++||.|.+|.+..++ +.++|||||+|.+. ++|++|++++|..++|++|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESE-DIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCH-HHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCH-HHHHHHHHCCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999876 45799999999999 999999999999999999999874
No 190
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2e-14 Score=121.50 Aligned_cols=79 Identities=23% Similarity=0.286 Sum_probs=70.7
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCce----EEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEE
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEV----YRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V----~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V 426 (443)
...++|||+|||..+|+++|+++|++ ||.| ..+++. .+.++|||||+|.+.++|.+|+. |||..++|++|+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFAR-FQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHH-HHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-hCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 35689999999999999999999999 8998 445444 47889999999999999999999 9999999999999
Q ss_pred eecCCCC
Q 013446 427 SPSKTPV 433 (443)
Q Consensus 427 ~~Ak~~~ 433 (443)
+|+++..
T Consensus 100 ~~a~~~~ 106 (115)
T 2cpx_A 100 EFGKNKK 106 (115)
T ss_dssp EECCCCS
T ss_pred EEccCCC
Confidence 9998753
No 191
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.55 E-value=8.1e-15 Score=125.06 Aligned_cols=77 Identities=17% Similarity=0.120 Sum_probs=70.3
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG-~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
...+|||+|||+.+|+++|+++|++ || .|..+.++.+ .++|||||+|.+.++|.+|++ |||..++|+.|+|++++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~-~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARE-NSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHH-HTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-hCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3589999999999999999999999 89 8999988643 478999999999999999998 99999999999999997
Q ss_pred CC
Q 013446 431 TP 432 (443)
Q Consensus 431 ~~ 432 (443)
.+
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 192
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.55 E-value=2.2e-14 Score=124.81 Aligned_cols=78 Identities=27% Similarity=0.398 Sum_probs=72.5
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
....++|||+|||+.+|+++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.+|++ |||..++|++|+|+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHh-cCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345789999999999999999999999 9999999998875 6899999999999999999998 99999999999999
Q ss_pred ec
Q 013446 428 PS 429 (443)
Q Consensus 428 ~A 429 (443)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 193
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=120.79 Aligned_cols=78 Identities=26% Similarity=0.405 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC---CCceEEEEEEcChHHHHHHHHHhcccccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN---SVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~---~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~ 330 (443)
.+.++|||+|||+++|+++|+++|+.|| |.+|+++.++. .++|||||+|.+. ++|.+|+.|++..+.|++|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~-~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDL-DSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSH-HHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCH-HHHHHHHhcCCCEeCCcEEEEEE
Confidence 4569999999999999999999999999 99999998874 4699999999999 99999999999999999999999
Q ss_pred CCC
Q 013446 331 SKT 333 (443)
Q Consensus 331 S~~ 333 (443)
++.
T Consensus 91 a~~ 93 (104)
T 1wi8_A 91 ADQ 93 (104)
T ss_dssp CCC
T ss_pred ccC
Confidence 853
No 194
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.55 E-value=1.7e-15 Score=134.35 Aligned_cols=125 Identities=16% Similarity=0.075 Sum_probs=73.9
Q ss_pred ceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCCHHHHHHHh
Q 013446 296 LRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 375 (443)
Q Consensus 296 kG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~TeedL~elF 375 (443)
+|+||.+|.-+ +.+..++.-.....+|...--... ...........++|||+|||+.+|+++|+++|
T Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~~~~~gg~~~g~~~g------------~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F 67 (139)
T 2hgn_A 1 MGSSHHHHHHS-SGLVPRGSHMASMTGGQQMGRGSG------------DSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 67 (139)
T ss_dssp ---------------------------------------------------------CCCCEECCSCCTTCCHHHHHHHH
T ss_pred CCcccccccCc-cccchhcccchhccCCCCCCCCCC------------CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 46788888887 666665552122223322210000 00111123345799999999999999999999
Q ss_pred hhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecCCCCCC
Q 013446 376 ESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRP 435 (443)
Q Consensus 376 ~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak~~~~~ 435 (443)
++ || |..|+|+.|. +.++|||||+|.+.++|.+|+.+|+..|+|+.|+|.++.++...
T Consensus 68 ~~-~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 68 SP-LN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGAS 126 (139)
T ss_dssp CS-CC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC-
T ss_pred Hh-cC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCCC
Confidence 99 99 6799998876 78999999999999999999999999999999999998865443
No 195
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=2e-14 Score=119.34 Aligned_cols=79 Identities=22% Similarity=0.386 Sum_probs=72.5
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHHhcccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~ 330 (443)
+.+.++|||+|||+++|+++|+++|+.|| |.+|+++.++. .++|||||+|.+. ++|.+|+.|+|..+.|++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEV-DSLKEALTYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSH-HHHHHHGGGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCH-HHHHHHHhhCCCeECCeEEEEEE
Confidence 34579999999999999999999999997 99999998874 4689999999999 99999999999999999999999
Q ss_pred CCC
Q 013446 331 SKT 333 (443)
Q Consensus 331 S~~ 333 (443)
++.
T Consensus 90 a~~ 92 (103)
T 2dng_A 90 AEG 92 (103)
T ss_dssp CCC
T ss_pred ecC
Confidence 864
No 196
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=122.49 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=69.3
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCC--ceeCCeeeEEee
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSG--VVLGSLPIRVSP 428 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG--~~l~Gr~L~V~~ 428 (443)
.++++|||+|||..+|+++|+++|++ ||.|..|.++++ ||||||+|.+.++|.+|++ |++ ..++|++|+|+|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~-fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEK-FGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTT-TSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 35689999999999999999999999 999999998764 7999999999999999998 765 569999999999
Q ss_pred cCCCC
Q 013446 429 SKTPV 433 (443)
Q Consensus 429 Ak~~~ 433 (443)
+++..
T Consensus 88 a~~~~ 92 (104)
T 1wex_A 88 STSKR 92 (104)
T ss_dssp CSSSS
T ss_pred ccCcc
Confidence 98643
No 197
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.55 E-value=1.6e-14 Score=125.96 Aligned_cols=80 Identities=26% Similarity=0.247 Sum_probs=73.9
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
+.+.++|||+|||+++|+++|+++|++||.|.+|+++.|+. .++|||||+|.+. ++|++|+. |+|..+.|++|.|.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~-~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV-DDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCH-HHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCH-HHHHHHHHHhCCCEECCEEEEEE
Confidence 34579999999999999999999999999999999998864 4799999999999 99999999 99999999999999
Q ss_pred CCCC
Q 013446 330 PSKT 333 (443)
Q Consensus 330 ~S~~ 333 (443)
++..
T Consensus 122 ~a~~ 125 (129)
T 2kxn_B 122 FSIT 125 (129)
T ss_dssp CCSS
T ss_pred EecC
Confidence 9853
No 198
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.55 E-value=4.4e-14 Score=121.32 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=74.4
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
....++|||+|||..+|+++|+++|+.||.|.+|++..++ +.++|||||+|.+. ++|.+|+. |+|..++|++|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~-~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERR-ADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSH-HHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCH-HHHHHHHHHcCCCEECCcEEEEEE
Confidence 3467999999999999999999999999999999999877 34689999999999 99999999 999999999999999
Q ss_pred CCCC
Q 013446 331 SKTA 334 (443)
Q Consensus 331 S~~~ 334 (443)
+...
T Consensus 111 a~~~ 114 (124)
T 2kt5_A 111 VASQ 114 (124)
T ss_dssp ECCT
T ss_pred eCCC
Confidence 8654
No 199
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8.2e-15 Score=123.96 Aligned_cols=79 Identities=29% Similarity=0.429 Sum_probs=73.1
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHHhcccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~ 330 (443)
+...++|||+|||..+|+++|+++|+.||.|.+|+++.++. .++|||||+|.+. ++|.+|+.|+|..+.|++|.|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEI-QSVPLAIGLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCG-GGHHHHHHHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcH-HHHHHHHHcCCCEeCCeEEEEEe
Confidence 34569999999999999999999999999999999998874 4789999999999 99999999999999999999998
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
++
T Consensus 101 a~ 102 (114)
T 2cq4_A 101 SQ 102 (114)
T ss_dssp HH
T ss_pred cC
Confidence 74
No 200
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.55 E-value=9.7e-15 Score=122.25 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=72.3
Q ss_pred cCCCcEEEEcCCCCCC------cHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCc-
Q 013446 253 EIIRRTVYVSDIDQQV------TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFY- 324 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~t------TeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr- 324 (443)
+...++|||+|||+.+ |+++|+++|++||.|.+|.+.+..+.++|||||+|.+. ++|.+|+. |+|..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~-~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASP-AHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSS-SHHHHHHHHCSSEECSTTC
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCH-HHHHHHHHHhCCcccCCCc
Confidence 3456899999999999 88999999999999999999865567899999999999 99999999 999999998
Q ss_pred ceeecCCC
Q 013446 325 PVRVLPSK 332 (443)
Q Consensus 325 ~I~V~~S~ 332 (443)
+|.|.++.
T Consensus 91 ~l~V~~a~ 98 (105)
T 2nlw_A 91 TFRVNLFT 98 (105)
T ss_dssp EEEEECSC
T ss_pred eEEEEEcc
Confidence 99999984
No 201
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=118.59 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=71.0
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
...++|||+|||..+|+++|+++|++ ||.|..+ ...+.++|||||+|.+.++|.+|+. |+|..++|++|+|++++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~-~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFED-ALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCS-EEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhh-CCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 45689999999999999999999999 8988766 3447889999999999999999999 99999999999999998
Q ss_pred CCCC
Q 013446 431 TPVR 434 (443)
Q Consensus 431 ~~~~ 434 (443)
+...
T Consensus 90 ~~~~ 93 (96)
T 1fjc_A 90 EKGG 93 (96)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6543
No 202
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=9.9e-15 Score=123.39 Aligned_cols=80 Identities=14% Similarity=0.253 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHH---HHhhcCCCeeEEEEecCCC-----CCceEEEEEEcChHHHHHHHHH-hcccccCCc
Q 013446 254 IIRRTVYVSDIDQQVTEEQLA---ALFVGCGQVVDCRICGDPN-----SVLRFAFIEFTDEAEGARAALN-LAGTMLGFY 324 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~---e~F~~~G~I~~v~i~~dk~-----~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr 324 (443)
...++|||+|||+++|+++|+ ++|++||.|.+|.+..++. .++|||||+|.+. ++|++|++ |+|..++|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~-~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRS-EDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSH-HHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcH-HHHHHHHHHhCCCEECCE
Confidence 356899999999999999999 9999999999999998774 3579999999999 99999999 999999999
Q ss_pred ceeecCCCCC
Q 013446 325 PVRVLPSKTA 334 (443)
Q Consensus 325 ~I~V~~S~~~ 334 (443)
+|+|.++...
T Consensus 92 ~l~V~~a~~k 101 (111)
T 2cpi_A 92 TLKASLGTTK 101 (111)
T ss_dssp EEEEESCCCC
T ss_pred EEEEEecccc
Confidence 9999998643
No 203
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.54 E-value=1.5e-14 Score=123.95 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=72.4
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCc---eEEEEEeccC-CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEee
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGE---VYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 428 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~---V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~ 428 (443)
..++|||+|||+.+|+++|+++|+. ||. |..|+|+.+. +.++|||||+|.+.++|.+|+.+|+..|+|+.|+|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 4589999999999999999999999 998 8999998876 7899999999999999999999999999999999999
Q ss_pred cC
Q 013446 429 SK 430 (443)
Q Consensus 429 Ak 430 (443)
++
T Consensus 95 a~ 96 (118)
T 2db1_A 95 SH 96 (118)
T ss_dssp EC
T ss_pred CC
Confidence 84
No 204
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=119.24 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=71.3
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
...++|||+|||..+|+++|+++|++ ||.|..++++++ +|||||+|.+.++|.+|++ |||..++|++|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEK-YGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTST-TCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhh-cCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 45689999999999999999999999 999999999754 7999999999999999998 99999999999999998
Q ss_pred CCC
Q 013446 431 TPV 433 (443)
Q Consensus 431 ~~~ 433 (443)
+..
T Consensus 88 ~~~ 90 (99)
T 2cpj_A 88 HSA 90 (99)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 205
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.4e-14 Score=119.86 Aligned_cols=80 Identities=25% Similarity=0.328 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~-~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
...++|||+|||..+|+++|+++|..||.|.+|+++.++. .++|||||+|.+. ++|.+|+. |+|..+.|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQS-IEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSH-HHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCH-HHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 3568999999999999999999999999999999998764 4689999999999 99999999 9999999999999998
Q ss_pred CCC
Q 013446 332 KTA 334 (443)
Q Consensus 332 ~~~ 334 (443)
+..
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 643
No 206
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.54 E-value=1.2e-14 Score=122.95 Aligned_cols=77 Identities=19% Similarity=0.247 Sum_probs=72.1
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
.+++|||+|||..+|+++|+++|++ ||.|..+.++.+ +.++|||||+|.+.++|.+|+. |||..++|+.|+|.|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGK-YGPIRQIRVGNT-PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEECS-TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4579999999999999999999999 999999999876 4568999999999999999999 999999999999999975
No 207
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=118.45 Aligned_cols=75 Identities=27% Similarity=0.296 Sum_probs=67.8
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCc-eEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCC-ceeCCeeeEEeec
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGE-VYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSG-VVLGSLPIRVSPS 429 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~-V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG-~~l~Gr~L~V~~A 429 (443)
..++|||+|||..+|+++|+++|++ ||. |..+.+. ++|||||+|.+.++|.+|++ ||| ..++|++|+|+|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGD-RKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHH-TTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 4589999999999999999999999 999 6666552 47899999999999999999 999 9999999999999
Q ss_pred CCCC
Q 013446 430 KTPV 433 (443)
Q Consensus 430 k~~~ 433 (443)
++..
T Consensus 81 ~~~~ 84 (93)
T 2cqh_A 81 VSKK 84 (93)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8753
No 208
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=121.89 Aligned_cols=76 Identities=20% Similarity=0.202 Sum_probs=70.3
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
..++|||+|||+.+|+++|+++|++ ||.|..|.+++ ++|||||+|.+.++|.+|+. |||..++|++|+|+||+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSR-FGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 4689999999999999999999999 99999998864 57899999999999999999 999999999999999975
Q ss_pred CC
Q 013446 432 PV 433 (443)
Q Consensus 432 ~~ 433 (443)
..
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 209
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1e-14 Score=120.67 Aligned_cols=79 Identities=30% Similarity=0.414 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
.+.++|||+|||+.+|+++|+++|+.||.|.+|+++.++. .++|||||+|.+. ++|.+|++ |+|..+.|++|.|.+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA-EDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSH-HHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCH-HHHHHHHHHhCCCEECCcEEEEEe
Confidence 3569999999999999999999999999999999988764 4789999999999 99999998 999999999999999
Q ss_pred CCC
Q 013446 331 SKT 333 (443)
Q Consensus 331 S~~ 333 (443)
++.
T Consensus 89 a~~ 91 (102)
T 2cqb_A 89 AKP 91 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 853
No 210
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.54 E-value=1.5e-14 Score=121.48 Aligned_cols=79 Identities=18% Similarity=0.258 Sum_probs=73.2
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
..+.++|||+|||..+|+++|+++|+.||.|.+|.+..++. .++|||||+|.+. ++|.+|+. |+|..++|++|.|.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETH-KQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSH-HHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCH-HHHHHHHHHcCCCEECCcEEEEE
Confidence 44679999999999999999999999999999999988763 4689999999999 99999999 99999999999999
Q ss_pred CCC
Q 013446 330 PSK 332 (443)
Q Consensus 330 ~S~ 332 (443)
+++
T Consensus 102 ~a~ 104 (110)
T 1oo0_B 102 WCF 104 (110)
T ss_dssp ESE
T ss_pred Ecc
Confidence 985
No 211
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4.6e-15 Score=116.21 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=69.1
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+. ++ ..++|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTT-TSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999 9999999999875 6889999999999999999999 88 9999999999987
No 212
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=116.55 Aligned_cols=77 Identities=16% Similarity=0.278 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC---CceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS---VLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~---skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
..++|||+|||.++|+++|+++|++||.|.++.+..++.+ ++|||||+|.+. ++|.+|+. |+|..++|++|.|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENP-DEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSH-HHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecH-HHHHHHHHHcCCCeECCeEEEEEE
Confidence 3589999999999999999999999999999999887743 689999999999 99999999 999999999999998
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
+.
T Consensus 82 a~ 83 (88)
T 4a8x_A 82 VL 83 (88)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 213
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.54 E-value=9.4e-15 Score=119.64 Aligned_cols=78 Identities=27% Similarity=0.399 Sum_probs=72.2
Q ss_pred cceeeeeeCCCCCCCHHHHH----HHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 353 CARTIYCTNIDKKVTQADVK----LFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~----elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
.+++|||+|||..+|+++|+ ++|++ ||.|..+.+++. +.++|||||+|.+.++|.+|+. |||..++|++|+|+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~-~G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSR-FGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGG-GSCEEEEECCHH-HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-CCCEEEEEEEcC-CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 46899999999999999999 99999 999999998743 5678999999999999999999 99999999999999
Q ss_pred ecCCC
Q 013446 428 PSKTP 432 (443)
Q Consensus 428 ~Ak~~ 432 (443)
|+++.
T Consensus 85 ~a~~~ 89 (97)
T 1nu4_A 85 YAKTD 89 (97)
T ss_dssp ECSSC
T ss_pred EccCC
Confidence 99875
No 214
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.2e-14 Score=120.15 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=69.7
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
..++|||+|||..+|+++|+++|++ ||.|.+++++ .++|||||+|.+.++|.+|+. |||..++|++|+|+|+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQN-FGFILDFKHY----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHT-TSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHh-CCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 4589999999999999999999999 9999999996 457999999999999999998 999999999999999975
No 215
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.6e-14 Score=120.56 Aligned_cols=82 Identities=24% Similarity=0.327 Sum_probs=74.0
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCee--------EEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccc
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV--------DCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTM 320 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~--------~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~ 320 (443)
.+...++|||+|||..+|+++|+++|+.||.|. .|+++.++. .++|||||+|.+. ++|.+|+. |+|..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP-PTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSH-HHHHHHHHHHTTCE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCH-HHHHHHHHHcCCCc
Confidence 345679999999999999999999999999998 699988763 4689999999999 99999999 99999
Q ss_pred cCCcceeecCCCCC
Q 013446 321 LGFYPVRVLPSKTA 334 (443)
Q Consensus 321 l~Gr~I~V~~S~~~ 334 (443)
+.|++|.|.+++..
T Consensus 90 ~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 90 FQGSKLKVSLARKK 103 (113)
T ss_dssp ETTEECEEECSSCC
T ss_pred cCCCEEEEEECCCC
Confidence 99999999998643
No 216
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.8e-14 Score=119.22 Aligned_cols=80 Identities=23% Similarity=0.206 Sum_probs=73.3
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEE-EEEeccC-CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeec
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYR-LRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~-vrI~~d~-~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~A 429 (443)
....+|||+|||+.+|+++|+++|++ ||.|.. +.|+.+. +.++|||||+|.+.++|.+|+..++..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSG-LEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTT-CCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 34589999999999999999999999 999987 8888775 78999999999999999999998999999999999998
Q ss_pred CCC
Q 013446 430 KTP 432 (443)
Q Consensus 430 k~~ 432 (443)
.+.
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 754
No 217
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4.8e-14 Score=116.61 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=70.7
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
....++|||+|||..+|+++|+++|+. |+ .+.++.+. +.++|||||+|.+.++|.+|+. |||..|.|++|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDG-SV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTT-CS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcC-Ce---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345689999999999999999999998 65 45566654 6889999999999999999999 99999999999999
Q ss_pred ecCCCCCC
Q 013446 428 PSKTPVRP 435 (443)
Q Consensus 428 ~Ak~~~~~ 435 (443)
|+++....
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99875433
No 218
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.2e-14 Score=119.49 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=70.4
Q ss_pred ccceeeeeeCCCC-CCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 352 MCARTIYCTNIDK-KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 352 ~~~~tIfV~NLp~-~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
...++|||+|||. .+|+++|+++|++ ||.|..+.++ +|||||+|.+.++|.+|+. |||..+.|++|+|+|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTT-TCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 4568999999998 9999999999999 9999999984 6899999999999999999 9999999999999999
Q ss_pred CCCCCCCC
Q 013446 430 KTPVRPRA 437 (443)
Q Consensus 430 k~~~~~~~ 437 (443)
++...+..
T Consensus 81 ~~~~~~~~ 88 (96)
T 2kvi_A 81 SSNARPQF 88 (96)
T ss_dssp ECCCC---
T ss_pred CcCCCCCC
Confidence 87655544
No 219
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.53 E-value=1.4e-14 Score=118.57 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
.+..|||+||++.+||++|+++|.+||+|.++.+.. ++|||||+|.+. ++|.+|++ ||+..+.|++|+|..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~-~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTR-EEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSH-HHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCH-HHHHHHHHHhcCCEECCcEEEEEEC
Confidence 358899999999999999999999999999999975 579999999999 99999999 9999999999999987
No 220
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.53 E-value=4.2e-14 Score=116.87 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=69.8
Q ss_pred cccceeeeeeCCCC-CCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 351 EMCARTIYCTNIDK-KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 351 ~~~~~tIfV~NLp~-~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
....++|||+|||. .+|+++|+++|++ ||.|..+++. +|||||+|.+.++|.+|+. |||..++|++|+|++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~-~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGG-GSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34568999999998 9999999999999 9999999983 7999999999999999999 999999999999999
Q ss_pred cCCC
Q 013446 429 SKTP 432 (443)
Q Consensus 429 Ak~~ 432 (443)
+++.
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9865
No 221
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.53 E-value=3.3e-14 Score=124.24 Aligned_cols=82 Identities=24% Similarity=0.340 Sum_probs=75.2
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcChHHHHHHHHH-hcccccCCcceee
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRV 328 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V 328 (443)
.+...++|||+|||.++|+++|+++|+.||.|.+|+++.++.+ ++|||||+|.+. ++|.+|++ |+|..+.|++|+|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSG-SSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSH-HHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHHhCCCEECCeEEEE
Confidence 4556799999999999999999999999999999999988753 699999999999 99999999 9999999999999
Q ss_pred cCCCCC
Q 013446 329 LPSKTA 334 (443)
Q Consensus 329 ~~S~~~ 334 (443)
.+++..
T Consensus 117 ~~a~~~ 122 (139)
T 1u6f_A 117 ALAASG 122 (139)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 998643
No 222
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.3e-14 Score=117.22 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=72.6
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeec
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVL 329 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~ 329 (443)
.....++|||+|||+.+|+++|+++|+.||.|..|+++.++ +.++|||||+|.+. ++|.+|+. ++..+.|++|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~-~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEY-ETQVKVMS-QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSH-HHHHHHHH-SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCH-HHHHHHHH-cCCeeCCeEEEEE
Confidence 34467999999999999999999999999999999999886 45789999999999 99999999 5778999999999
Q ss_pred CCCCC
Q 013446 330 PSKTA 334 (443)
Q Consensus 330 ~S~~~ 334 (443)
++...
T Consensus 89 ~a~~~ 93 (103)
T 2cqg_A 89 LPNSK 93 (103)
T ss_dssp CCCTT
T ss_pred ecCCC
Confidence 98643
No 223
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.53 E-value=7.1e-15 Score=121.90 Aligned_cols=80 Identities=24% Similarity=0.323 Sum_probs=72.0
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC---CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEe
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY---HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVS 427 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~---~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~ 427 (443)
....++|||+|||..+|+++|+++|++ || |..++++.+. +.++|||||+|.+.++|.+|+.|||..++|+.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCS-SC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 345689999999999999999999999 99 9999998874 688999999999999999999999999999999999
Q ss_pred ecCCC
Q 013446 428 PSKTP 432 (443)
Q Consensus 428 ~Ak~~ 432 (443)
++++.
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99764
No 224
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=7.4e-15 Score=121.79 Aligned_cols=78 Identities=32% Similarity=0.442 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
...++|||+|||..+|+++|+++|+.||.|.+|++..++. .++|||||+|.+. ++|.+|++ |+|..+.|++|.|.+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ-ETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCH-HHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCH-HHHHHHHHHhCCCeeCCcEEEEEe
Confidence 3568999999999999999999999999999999998764 4689999999999 99999998 999999999999999
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
+.
T Consensus 85 a~ 86 (104)
T 1p1t_A 85 AA 86 (104)
T ss_dssp TT
T ss_pred CC
Confidence 85
No 225
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.53 E-value=9.9e-15 Score=121.01 Aligned_cols=79 Identities=25% Similarity=0.405 Sum_probs=70.0
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC---CCCceEEEEEEcChHHHHHHHHHhcccccCCcceee
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP---NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk---~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V 328 (443)
.....++|||+|||+++|+++|+++|+.|| |.+|++..++ +.++|||||+|.+. ++|.+|+.|+|..++|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~-~~a~~Ai~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDL-DSLLSALSLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCH-HHHHHHHHTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCH-HHHHHHHhcCCCEECCeEEEE
Confidence 345679999999999999999999999999 9999999876 44799999999999 999999999999999999999
Q ss_pred cCCC
Q 013446 329 LPSK 332 (443)
Q Consensus 329 ~~S~ 332 (443)
.+++
T Consensus 93 ~~a~ 96 (100)
T 2j76_E 93 DVAD 96 (100)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9985
No 226
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.7e-14 Score=121.35 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=70.9
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecC
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak 430 (443)
..+|||+|||+.+|++||+++|++ | .|..|+|+.|. +.++|||||+|.+.++|.+|+.+|+..|+|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~-~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHG-L-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTT-S-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhcc-C-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 479999999999999999999999 8 89999999876 789999999999999999999999999999999998875
No 227
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=6e-14 Score=113.64 Aligned_cols=74 Identities=23% Similarity=0.415 Sum_probs=69.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
.+.++|||+|||.++|+++|+++|++||.|.+|++. +|||||+|.+. ++|.+|+. |+|..+.|++|+|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDK-TAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSH-HHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCH-HHHHHHHHHhcCCccCCcEEEEEECC
Confidence 467999999999999999999999999999999998 47999999999 99999998 99999999999999986
Q ss_pred CC
Q 013446 333 TA 334 (443)
Q Consensus 333 ~~ 334 (443)
..
T Consensus 79 ~~ 80 (90)
T 2dnq_A 79 NK 80 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 228
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=125.31 Aligned_cols=78 Identities=22% Similarity=0.331 Sum_probs=71.0
Q ss_pred cceeeeeeCCCCCCCHHHHH----HHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 353 CARTIYCTNIDKKVTQADVK----LFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~----elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
..++|||+|||+.+++++|+ ++|++ ||.|..|.+.++ +.++|||||+|.+.++|.+|+. |||..|.|++|+|+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~-~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASS-QGDILDIVVDLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhcc-CCCeEEEEeccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 45799999999999999876 69999 999999988653 6789999999999999999998 99999999999999
Q ss_pred ecCCC
Q 013446 428 PSKTP 432 (443)
Q Consensus 428 ~Ak~~ 432 (443)
||++.
T Consensus 106 ~a~~~ 110 (127)
T 2a3j_A 106 FSETP 110 (127)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 99864
No 229
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.52 E-value=5.4e-15 Score=132.03 Aligned_cols=76 Identities=18% Similarity=0.316 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
..++|||+|||..+|+++|+++|++||.|.++.+..++ +.++|||||+|.+. ++|.+|+. |+|..++|++|.|.++
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDI-NVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESST-THHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCH-HHHHHHHHHcCCCEECCeEEEEEeC
Confidence 46999999999999999999999999999999999885 34699999999999 99999999 9999999999999886
No 230
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.52 E-value=5.4e-15 Score=115.41 Aligned_cols=73 Identities=15% Similarity=0.264 Sum_probs=68.9
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeec
Q 013446 356 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429 (443)
Q Consensus 356 tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~A 429 (443)
+|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+.+++..++|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGG-FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHH-HSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 6899999999999999999999 9999999998875 68899999999999999999998899999999999886
No 231
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.52 E-value=1.7e-14 Score=123.59 Aligned_cols=80 Identities=33% Similarity=0.550 Sum_probs=73.7
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~ 330 (443)
+...++|||+|||.++|+++|+++|+.||.|.+|++..++ +.++|||||+|.+. ++|.+|+.|+|..++|+.|.|.+
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAER-NSVDAAVAMDETVFRGRTIKVLP 111 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSH-HHHHHHHTTTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCH-HHHHHHHhcCCCeECCeEEEEEE
Confidence 3456999999999999999999999999999999999875 45799999999999 99999999999999999999999
Q ss_pred CCC
Q 013446 331 SKT 333 (443)
Q Consensus 331 S~~ 333 (443)
++.
T Consensus 112 a~~ 114 (124)
T 2jwn_A 112 KRT 114 (124)
T ss_dssp SSC
T ss_pred CCC
Confidence 864
No 232
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.4e-14 Score=117.89 Aligned_cols=76 Identities=24% Similarity=0.281 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hc--ccccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LA--GTMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-ln--g~~l~Gr~I~V~~ 330 (443)
.+.++|||+|||+++|+++|+++|++||.|.+|.++++ +|||||+|.+. ++|.+|++ |+ +..+.|++|.|.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~-~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATE-EAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSH-HHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCH-HHHHHHHHHhccCCceECCcEEEEEE
Confidence 35689999999999999999999999999999999876 58999999999 99999998 64 6779999999999
Q ss_pred CCCC
Q 013446 331 SKTA 334 (443)
Q Consensus 331 S~~~ 334 (443)
++..
T Consensus 88 a~~~ 91 (101)
T 2cq1_A 88 SNHK 91 (101)
T ss_dssp CSCS
T ss_pred cCcc
Confidence 8643
No 233
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.52 E-value=3.3e-14 Score=122.19 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=74.0
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
....++|||+|||+.+|+++|.++|+.||.|.+|.++.++ +.++|||||+|.+. ++|.+|++ |+|..+.|++|.|.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY-KEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSH-HHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCH-HHHHHHHHHhCCCeeCCeEEEEE
Confidence 3457999999999999999999999999999999999886 34689999999999 99999998 99999999999999
Q ss_pred CCCCC
Q 013446 330 PSKTA 334 (443)
Q Consensus 330 ~S~~~ 334 (443)
++...
T Consensus 98 ~a~~~ 102 (126)
T 3ex7_B 98 WCFVR 102 (126)
T ss_dssp ESEES
T ss_pred EecCC
Confidence 98543
No 234
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.9e-14 Score=120.32 Aligned_cols=78 Identities=21% Similarity=0.189 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~ 332 (443)
...++|||+|||+++|+++|+++|++||.+ +|+|+.|+ ..++|||||+|.+. ++|++|+++++..++|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~-~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATH-EDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSS-HHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCH-HHHHHHHHhCCCeECCcEEEEEECC
Confidence 356899999999999999999999999954 99999887 34799999999999 9999999999999999999999875
Q ss_pred C
Q 013446 333 T 333 (443)
Q Consensus 333 ~ 333 (443)
.
T Consensus 91 ~ 91 (102)
T 1wez_A 91 T 91 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 235
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.52 E-value=4.4e-14 Score=118.48 Aligned_cols=76 Identities=24% Similarity=0.211 Sum_probs=69.0
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccc--cCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTM--LGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~--l~Gr~I~V~ 329 (443)
..++++|||+|||+++|+++|+++|++||.|.+++++++ +|||||+|.+. ++|.+|++ |++.. +.|++|.|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~----kg~AFVef~~~-~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK----KRQALVEFEDV-LGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT----TTEEEEEESSH-HHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC----CCEEEEEECCH-HHHHHHHHHhcCCCceeCCcEEEEE
Confidence 346799999999999999999999999999999999854 57999999999 99999998 88865 789999999
Q ss_pred CCCC
Q 013446 330 PSKT 333 (443)
Q Consensus 330 ~S~~ 333 (443)
+|+.
T Consensus 93 ~S~~ 96 (100)
T 3r27_A 93 YSTS 96 (100)
T ss_dssp ECSC
T ss_pred eccc
Confidence 9863
No 236
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.52 E-value=2.2e-14 Score=129.21 Aligned_cols=77 Identities=25% Similarity=0.344 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCG--QVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G--~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
..++|||+|||+++|+++|+++|+.|| .|.+|+++.|+. .++|||||+|.+. ++|.+|+. |+|..++|++|.|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~-~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASE-NSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCH-HHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCH-HHHHHHHHHcCCCEECCeEeEEE
Confidence 458999999999999999999999999 999999998864 4699999999999 99999999 89999999999999
Q ss_pred CCC
Q 013446 330 PSK 332 (443)
Q Consensus 330 ~S~ 332 (443)
++.
T Consensus 133 ~a~ 135 (156)
T 3n9u_C 133 PAT 135 (156)
T ss_dssp ECC
T ss_pred EcC
Confidence 884
No 237
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.1e-14 Score=118.95 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEecCC-CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD-CRICGDP-NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS 331 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~-v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S 331 (443)
...++|||+|||+++|+++|+++|+.||.|.+ |.|+.+. +.++|||||+|.+. ++|.+|+..++..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~-~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQ-EIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSH-HHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCH-HHHHHHHHhCcchhCCcEEEEEEC
Confidence 35689999999999999999999999999987 8887774 45799999999999 999999999999999999999887
Q ss_pred C
Q 013446 332 K 332 (443)
Q Consensus 332 ~ 332 (443)
.
T Consensus 92 ~ 92 (104)
T 1wg5_A 92 S 92 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 238
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=117.53 Aligned_cols=77 Identities=26% Similarity=0.370 Sum_probs=69.7
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
...++|||+|||..+|+++|+++|++ ||.|. +.++.+ .++|||||+|.+.++|.+|+. |||..++|++|+|++++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~-~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRE-LGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHH-TTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHh-cCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34689999999999999999999999 99996 566543 678999999999999999998 99999999999999998
Q ss_pred CC
Q 013446 431 TP 432 (443)
Q Consensus 431 ~~ 432 (443)
+.
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 239
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.52 E-value=3.2e-14 Score=120.12 Aligned_cols=80 Identities=21% Similarity=0.329 Sum_probs=70.1
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeec
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVL 329 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~ 329 (443)
.+...++|||+|||+++|+++|+++|+.||.|.+|++..++ +.++|||||+|.+. ++|.+|+...+..++|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~-~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ-AGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSH-HHHHHHHHSSCEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCH-HHHHHHHHHCCCcCCCEEEEEE
Confidence 44567999999999999999999999999999999999887 45799999999999 9999999955799999999999
Q ss_pred CCC
Q 013446 330 PSK 332 (443)
Q Consensus 330 ~S~ 332 (443)
++.
T Consensus 100 ~a~ 102 (109)
T 2rs2_A 100 VAF 102 (109)
T ss_dssp ECC
T ss_pred Ecc
Confidence 885
No 240
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.1e-14 Score=122.29 Aligned_cols=75 Identities=24% Similarity=0.296 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcc--cccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAG--TMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng--~~l~Gr~I~V~~S 331 (443)
+.++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+. ++|.+|++ +++ ..+.|++|.|.++
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~-e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTE-EAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCH-HHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCH-HHHHHHHHHhccCCceECCeEEEEEEc
Confidence 5689999999999999999999999999999999976 58999999999 99999998 764 6899999999998
Q ss_pred CCC
Q 013446 332 KTA 334 (443)
Q Consensus 332 ~~~ 334 (443)
+..
T Consensus 105 ~~k 107 (119)
T 2ad9_A 105 NHK 107 (119)
T ss_dssp SSS
T ss_pred cCC
Confidence 643
No 241
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.7e-14 Score=118.46 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=72.1
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
.+...++|||+|||..+|+++|+++|+.||.|.+|++..+ +|||||+|.+. ++|.+|+. |+|..+.|++|.|.+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTH-ESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSH-HHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCH-HHHHHHHHHcCCCEECCcEEEEEe
Confidence 4456799999999999999999999999999999999977 57999999999 99999997 999999999999999
Q ss_pred CCCC
Q 013446 331 SKTA 334 (443)
Q Consensus 331 S~~~ 334 (443)
++..
T Consensus 96 a~~~ 99 (109)
T 1x4g_A 96 GKES 99 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8643
No 242
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.7e-14 Score=116.66 Aligned_cols=76 Identities=25% Similarity=0.367 Sum_probs=68.2
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
....++|||+|||+.+|+++|+++|+.||.|. +.++.+ .++|||||+|.+. ++|.+|+. |+|..+.|++|.|.++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDS-AAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSH-HHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCH-HHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34568999999999999999999999999996 666654 4679999999999 99999998 9999999999999998
Q ss_pred C
Q 013446 332 K 332 (443)
Q Consensus 332 ~ 332 (443)
+
T Consensus 92 ~ 92 (97)
T 2e5j_A 92 R 92 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 243
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.51 E-value=9.3e-15 Score=118.18 Aligned_cols=76 Identities=26% Similarity=0.411 Sum_probs=69.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCC
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKT 333 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~ 333 (443)
++|||+|||.++|+++|+++|++||.|.+|.+..++ +.++|||||+|.+. + |.+|+. |+|..++|++|.|.++..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEE-S-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTT-H-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCH-H-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 689999999999999999999999999999999887 45799999999999 8 999998 999999999999999864
Q ss_pred C
Q 013446 334 A 334 (443)
Q Consensus 334 ~ 334 (443)
.
T Consensus 80 ~ 80 (90)
T 2ki2_A 80 K 80 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 244
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=6.1e-14 Score=118.11 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hccc--ccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGT--MLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~--~l~Gr~I~V~~ 330 (443)
.+.++|||+|||+++|+++|+++|++||.|.+|.++++ +|||||+|.+. ++|.+|++ |++. .+.|++|.|.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~-~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENI-DSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSH-HHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCH-HHHHHHHHHhccCCceECCEEEEEEE
Confidence 35689999999999999999999999999999999865 57999999999 99999998 8764 58999999999
Q ss_pred CCCC
Q 013446 331 SKTA 334 (443)
Q Consensus 331 S~~~ 334 (443)
++..
T Consensus 88 a~~~ 91 (104)
T 1wex_A 88 STSK 91 (104)
T ss_dssp CSSS
T ss_pred ccCc
Confidence 8643
No 245
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.4e-14 Score=119.81 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=73.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS 331 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S 331 (443)
...++|||+|||+.+|+++|+++|+.||.|..|+++.++. .++|||||+|.+. ++|.+|+..++..+.|++|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM-AEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSH-HHHHHHHTSCSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCH-HHHHHHHHhCCcEECCEEEEEEEC
Confidence 3569999999999999999999999999999999998864 4789999999999 999999998999999999999998
Q ss_pred CC
Q 013446 332 KT 333 (443)
Q Consensus 332 ~~ 333 (443)
..
T Consensus 104 ~~ 105 (116)
T 1x4b_A 104 VA 105 (116)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 246
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=1.7e-14 Score=123.63 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=72.3
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEecCC-CCCceEEEEEEcChHHHHHHHHHhcccccCCcceee
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQ---VVDCRICGDP-NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~---I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V 328 (443)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++ +.++|||||+|.+. ++|.+|+.+++..++|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~-~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESE-DDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSH-HHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCH-HHHHHHHhcCCCeECCeEEEE
Confidence 345699999999999999999999999998 8999998776 45799999999999 999999999999999999999
Q ss_pred cCCC
Q 013446 329 LPSK 332 (443)
Q Consensus 329 ~~S~ 332 (443)
.++.
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8874
No 247
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.8e-14 Score=122.42 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=72.4
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCe-eEEEEecCC-CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQV-VDCRICGDP-NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I-~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~ 330 (443)
+.+.++|||+|||+++|+++|+++|+.||.| ..|+|+.|+ +.++|||||+|.+. ++|.+|+.+++..++|++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~-~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNE-DDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSH-HHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCH-HHHHHHHHhCCCccCCeEEEEEE
Confidence 3456999999999999999999999999999 889999887 34799999999999 99999999999999999999998
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
+.
T Consensus 91 a~ 92 (114)
T 2cpy_A 91 VT 92 (114)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 248
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=4.1e-14 Score=116.91 Aligned_cols=74 Identities=24% Similarity=0.253 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
...++|||+|||.++|+++|+++|+.||.|.++++.. ++|||||+|.+. ++|.+|+. |+|..++|+.|+|.+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~----~~g~afV~f~~~-~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP----EKGCCFIKYDTH-EQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET----TTTEEEEECSSH-HHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec----CCCEEEEEECCH-HHHHHHHHHhCCCeECCeEEEEEecc
Confidence 3568999999999999999999999999999999983 468999999999 99999998 99999999999999985
No 249
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.2e-14 Score=114.66 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=72.1
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS 331 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S 331 (443)
+...++|||+|||+++|+++|+++|+.| .|.+|+++.+. +.++|||||+|.+. ++|.+|+.++|..++|++|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~-~~a~~A~~~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNE-EEVKQALKCNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSH-HHHHHHHHSCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCH-HHHHHHHHhCCceeCCcEEEEEEC
Confidence 3456999999999999999999999999 89999999874 34699999999999 999999999999999999999998
Q ss_pred CC
Q 013446 332 KT 333 (443)
Q Consensus 332 ~~ 333 (443)
+.
T Consensus 85 ~~ 86 (91)
T 2dgw_A 85 KS 86 (91)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 250
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.51 E-value=2.7e-14 Score=118.25 Aligned_cols=78 Identities=18% Similarity=0.387 Sum_probs=72.9
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak 430 (443)
...++|||+|||..+|+++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.+|+. ++..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFAR-YGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 34689999999999999999999999 9999999999886 6789999999999999999999 9999999999999986
Q ss_pred C
Q 013446 431 T 431 (443)
Q Consensus 431 ~ 431 (443)
+
T Consensus 85 ~ 85 (102)
T 2xs2_A 85 R 85 (102)
T ss_dssp E
T ss_pred c
Confidence 4
No 251
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.4e-14 Score=119.49 Aligned_cols=75 Identities=31% Similarity=0.312 Sum_probs=68.3
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hccc--ccCCcceeecC
Q 013446 255 IRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGT--MLGFYPVRVLP 330 (443)
Q Consensus 255 ~~~tLfVgNLp~-~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~--~l~Gr~I~V~~ 330 (443)
+.++|||+|||+ ++|+++|+++|++||.|.+|+|++++ |||||+|.+. ++|..|++ |++. .+.|++|.|.+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k----g~aFVef~~~-~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI----NEAFIEMATT-EDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----SCEEEEESSH-HHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCH-HHHHHHHHHHcCCCceECCcEEEEEE
Confidence 579999999999 99999999999999999999998764 7999999999 99999998 8864 59999999999
Q ss_pred CCCC
Q 013446 331 SKTA 334 (443)
Q Consensus 331 S~~~ 334 (443)
++..
T Consensus 89 a~~~ 92 (102)
T 1x4d_A 89 SQKY 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8643
No 252
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.51 E-value=1.2e-14 Score=113.42 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=67.7
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCC
Q 013446 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS 331 (443)
Q Consensus 258 tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S 331 (443)
+|||+|||+++|+++|+++|++||.|.+|.+..++. .++|||||+|.+. ++|.+|+.+++..+.|++|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEE-EPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSS-HHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCH-HHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999988764 4799999999999 999999999999999999998764
No 253
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.51 E-value=7.9e-14 Score=123.18 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=74.6
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
.++|||+|||+.+|+++|+++|++ ||.|.+++++++. +.++|||||+|.+.++|.+|++ |+|..++|++|+|.+++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGS-IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 479999999999999999999999 9999999998875 6889999999999999999999 99999999999999998
Q ss_pred CCCC
Q 013446 431 TPVR 434 (443)
Q Consensus 431 ~~~~ 434 (443)
+...
T Consensus 81 ~~~~ 84 (167)
T 1fxl_A 81 PSSA 84 (167)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 6543
No 254
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.5e-14 Score=113.20 Aligned_cols=73 Identities=23% Similarity=0.386 Sum_probs=67.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
++|||+|||+++|+++|+++|++||.|.++.+..++. .++|||||+|.+. ++|.+|+. ++ ..++|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ-AGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCT-THHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCH-HHHHHHHHhCC-CccCCEEEEEEec
Confidence 5799999999999999999999999999999998763 5799999999999 99999999 77 9999999999875
No 255
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.50 E-value=1.7e-14 Score=127.38 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=73.0
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCc---eEEEEEeccC-CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEee
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGE---VYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 428 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~---V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~ 428 (443)
..++|||+|||+.+|+++|+++|++ ||. |..|+|+.|. +.++|||||+|.+.++|.+|+.+||..|+|+.|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEE
Confidence 4589999999999999999999999 999 8899998876 7899999999999999999999999999999999999
Q ss_pred cCC
Q 013446 429 SKT 431 (443)
Q Consensus 429 Ak~ 431 (443)
+.+
T Consensus 122 a~~ 124 (136)
T 2hgl_A 122 SHR 124 (136)
T ss_dssp CCH
T ss_pred CCh
Confidence 853
No 256
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.5e-14 Score=117.53 Aligned_cols=79 Identities=22% Similarity=0.338 Sum_probs=70.0
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH-hccccc--------C
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN-LAGTML--------G 322 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-lng~~l--------~ 322 (443)
+...++|||+|||+.+|+++|+++|+.||.|.+|+++.++ +.++|||||+|.+. ++|.+|+. |+|..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~-~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMEST-EKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCH-HHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCH-HHHHHHHHHhCCCEEcCCccccCC
Confidence 3466999999999999999999999999999999999887 34689999999999 99999999 999999 4
Q ss_pred CcceeecCCC
Q 013446 323 FYPVRVLPSK 332 (443)
Q Consensus 323 Gr~I~V~~S~ 332 (443)
+++|.|.+++
T Consensus 101 ~~~l~v~~a~ 110 (114)
T 1x5o_A 101 TEPLLCKFSG 110 (114)
T ss_dssp SSCBEEEECC
T ss_pred CCceeEEccC
Confidence 6667777764
No 257
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=7.9e-14 Score=114.52 Aligned_cols=74 Identities=23% Similarity=0.278 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccC--CcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLG--FYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~--Gr~I~V~~S 331 (443)
+.++|||+|||.++|+++|+++|++||.|.+|.+..+ +|||||+|.+. ++|++|++ |+|..+. |++|+|.++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~-~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESL-DAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSH-HHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCH-HHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 5689999999999999999999999999999999865 57999999999 99999999 9999999 999999998
Q ss_pred CC
Q 013446 332 KT 333 (443)
Q Consensus 332 ~~ 333 (443)
+.
T Consensus 91 ~~ 92 (97)
T 1why_A 91 KS 92 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 258
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.50 E-value=1.9e-14 Score=126.32 Aligned_cols=81 Identities=23% Similarity=0.336 Sum_probs=74.2
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
+...++|||+|||+++|+++|+++|+.||.|..|++..++ +.++|||||+|.+. ++|++|+. |+|..+.|++|.|.
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~-~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK-RDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCH-HHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCH-HHHHHHHHHcCCCEECCEEEEEE
Confidence 3456999999999999999999999999999999999876 35799999999999 99999998 99999999999999
Q ss_pred CCCCC
Q 013446 330 PSKTA 334 (443)
Q Consensus 330 ~S~~~ 334 (443)
+++..
T Consensus 123 ~a~~~ 127 (135)
T 2lea_A 123 MARYG 127 (135)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98644
No 259
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.50 E-value=5.2e-14 Score=122.51 Aligned_cols=76 Identities=30% Similarity=0.418 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
..++|||+|||..+|+++|+++|++||.|.++++..++. .++|||||+|.+. ++|.+|++ |+|..++|++|+|.++
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA-EDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCH-HHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCH-HHHHHHHHHhCCCEECCEEEEEEeC
Confidence 569999999999999999999999999999999998764 4799999999999 99999998 9999999999999874
No 260
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.5e-13 Score=112.92 Aligned_cols=74 Identities=22% Similarity=0.287 Sum_probs=68.2
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
...++|||+|+ .+|+++|+++|++ ||.|..|.+. .++|||||+|.+.++|.+|+. |||..++|++|+|.|++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~-~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTT-TSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhh-CCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 34689999996 8999999999999 9999999984 568999999999999999998 99999999999999998
Q ss_pred CC
Q 013446 431 TP 432 (443)
Q Consensus 431 ~~ 432 (443)
+.
T Consensus 86 ~~ 87 (97)
T 1x5p_A 86 KQ 87 (97)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 261
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.1e-14 Score=112.44 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=69.3
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-h-cccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-L-AGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-l-ng~~l~Gr~I~V~~ 330 (443)
+...++|||+|||..+|+++|+++|++||.|.+|++.++ +|||||+|.+. ++|.+|+. | +|..+.|++|+|.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~----kg~afV~f~~~-~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR----QQCAFIQFATR-QAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSH-HHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC----CCEEEEEECCH-HHHHHHHHHhcCCeeECCCEEEEEe
Confidence 446799999999999999999999999999999999874 57999999999 99999999 8 99999999999998
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 262
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.50 E-value=1.7e-14 Score=117.58 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
..++|||+|||+++|+++|+++|++||.|..+.++.++. .++|||||+|.+. ++|.+|++ |++..+.|++|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~-~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR-DEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSH-HHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCH-HHHHHHHHHhCCCeECCcEEEEEec
Confidence 359999999999999999999999999998887777654 4689999999999 99999998 9999999999999987
Q ss_pred C
Q 013446 332 K 332 (443)
Q Consensus 332 ~ 332 (443)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 263
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.50 E-value=4.4e-14 Score=126.09 Aligned_cols=80 Identities=25% Similarity=0.289 Sum_probs=74.1
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
....++|||+|||..+|+++|.++|++||.|..|.|+.++. .++|||||+|.+. ++|.+|+. |++..+.|++|.|.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSR-ADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH-HHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCH-HHHHHHHHHhCCCEECCeEEEEE
Confidence 34679999999999999999999999999999999998874 4689999999999 99999999 99999999999999
Q ss_pred CCCC
Q 013446 330 PSKT 333 (443)
Q Consensus 330 ~S~~ 333 (443)
+++.
T Consensus 115 ~a~~ 118 (156)
T 1h2v_Z 115 WDAG 118 (156)
T ss_dssp EESC
T ss_pred ECCC
Confidence 9863
No 264
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.50 E-value=2.3e-14 Score=126.57 Aligned_cols=78 Identities=15% Similarity=0.171 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEecCC-CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeec
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQ---VVDCRICGDP-NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVL 329 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~---I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~ 329 (443)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.|+ +.++|||||+|.+. ++|++|+++++..++|++|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~-e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSE-DDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSH-HHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCH-HHHHHHHhcCCCEECCEEEEEE
Confidence 45699999999999999999999999998 8899999876 45799999999999 9999999999999999999999
Q ss_pred CCC
Q 013446 330 PSK 332 (443)
Q Consensus 330 ~S~ 332 (443)
++.
T Consensus 121 ~a~ 123 (136)
T 2hgl_A 121 KSH 123 (136)
T ss_dssp ECC
T ss_pred ECC
Confidence 873
No 265
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=8.1e-15 Score=121.20 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=70.8
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak 430 (443)
..++|||+|||..+|+++|+++|++ ||.|.. .++.+. +.++|||||+|.+.++|.+|++|||..+.|+.|+|.+++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISE-LFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHH-HHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 4689999999999999999999999 898887 555553 688999999999999999999999999999999999998
Q ss_pred CC
Q 013446 431 TP 432 (443)
Q Consensus 431 ~~ 432 (443)
+.
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 266
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.50 E-value=9.5e-15 Score=122.71 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=73.4
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCc---eEEEEEeccC-CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEe
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGE---VYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVS 427 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~---V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~ 427 (443)
....+|||+|||+.+|+++|+++|+. ||. |..|+|+.+. +.++|||||+|.+.++|.+|+.+++..++|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~-~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTT-SCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHh-cCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 34589999999999999999999999 898 8999998876 789999999999999999999999999999999999
Q ss_pred ecCC
Q 013446 428 PSKT 431 (443)
Q Consensus 428 ~Ak~ 431 (443)
++.+
T Consensus 88 ~a~~ 91 (107)
T 2lmi_A 88 EINN 91 (107)
T ss_dssp ECCH
T ss_pred ECCH
Confidence 9864
No 267
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.4e-14 Score=117.22 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEe-cCCC--CCceEEEEEEcChHHHHHHHHH-hc--ccccCCccee
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQ-VVDCRIC-GDPN--SVLRFAFIEFTDEAEGARAALN-LA--GTMLGFYPVR 327 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~-I~~v~i~-~dk~--~skG~aFVeF~t~~e~A~~Al~-ln--g~~l~Gr~I~ 327 (443)
+.++|||+|||+.+|+++|+++|..||. |.+|.++ .++. .++|||||+|.+. ++|.+|+. |+ +..+.|++|.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~-~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESH-RAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSH-HHHHHHHTTTTTCCSCBTTBCCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCH-HHHHHHHHHhhCCCceecCCeEE
Confidence 5699999999999999999999999998 9999998 5664 5799999999999 99999999 85 5899999999
Q ss_pred ecCCCCC
Q 013446 328 VLPSKTA 334 (443)
Q Consensus 328 V~~S~~~ 334 (443)
|.+++..
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9998643
No 268
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.3e-14 Score=119.79 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKT 333 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~ 333 (443)
..++|||+|||+.+|+++|+++|++||.|.+|.+.. ++|||||+|.+. ++|.+|+. |+|..+.|++|.|.++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~-~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEP-LEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCH-HHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCH-HHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 468999999999999999999999999999998874 458999999999 99999998 999999999999999865
Q ss_pred C
Q 013446 334 A 334 (443)
Q Consensus 334 ~ 334 (443)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 269
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.3e-14 Score=117.62 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
..++|||+|||+.+|+++|+++|++||.|..+.++.++. .++|||||+|.+. ++|++|++ |+|..++|++|+|.++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~-~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR-DEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCH-HHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCH-HHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 468999999999999999999999999998777776553 4689999999999 99999997 9999999999999998
Q ss_pred C
Q 013446 332 K 332 (443)
Q Consensus 332 ~ 332 (443)
.
T Consensus 93 ~ 93 (98)
T 2cqp_A 93 S 93 (98)
T ss_dssp S
T ss_pred C
Confidence 5
No 270
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.9e-14 Score=123.92 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS 331 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S 331 (443)
...++|||+|||+++|+++|+++|+.||.|.++.++.+. +.++|||||+|.+. ++|.+|+.|+|..++|++|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~-~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNE-ADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSS-HHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCH-HHHHHHHHhCCCeECCcEEEEEEC
Confidence 456999999999999999999999999999875444433 45699999999999 999999999999999999999987
Q ss_pred C
Q 013446 332 K 332 (443)
Q Consensus 332 ~ 332 (443)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 271
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.49 E-value=5.4e-14 Score=113.73 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=69.2
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~ 431 (443)
..++|||+|||+.+|+++|+++|++ | .|..+++. .++|||||+|.+.++|.+|++ |||..++|++|+|+|+.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKD-Y-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCS-S-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhh-C-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 3579999999999999999999999 8 89999884 578999999999999999999 999999999999999975
Q ss_pred CC
Q 013446 432 PV 433 (443)
Q Consensus 432 ~~ 433 (443)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 272
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.49 E-value=1.9e-14 Score=120.81 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=72.3
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEecCC-CCCceEEEEEEcChHHHHHHHHHhcccccCCcceee
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQ---VVDCRICGDP-NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~---I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V 328 (443)
....++|||+|||+++|+++|+++|+.||. |.+|+++.|+ +.++|||||+|.+. ++|.+|+.+++..++|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~-~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESE-QDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSH-HHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCH-HHHHHHHHhCcceeCCeEEEE
Confidence 346799999999999999999999999987 8999999876 45799999999999 999999999999999999999
Q ss_pred cCCC
Q 013446 329 LPSK 332 (443)
Q Consensus 329 ~~S~ 332 (443)
.++.
T Consensus 87 ~~a~ 90 (107)
T 2lmi_A 87 YEIN 90 (107)
T ss_dssp EECC
T ss_pred EECC
Confidence 9874
No 273
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.49 E-value=6.4e-14 Score=124.85 Aligned_cols=81 Identities=23% Similarity=0.336 Sum_probs=74.4
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
....++|||+|||+++|+++|+++|+.||.|.+|++..|+ +.++|||||+|.+. ++|.+|+. |+|..++|++|.|.
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK-RDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBH-HHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCH-HHHHHHHHHhCCCEECCeEEEEE
Confidence 3457999999999999999999999999999999999886 45799999999999 99999998 99999999999999
Q ss_pred CCCCC
Q 013446 330 PSKTA 334 (443)
Q Consensus 330 ~S~~~ 334 (443)
+++..
T Consensus 146 ~a~~~ 150 (158)
T 2kn4_A 146 MARYG 150 (158)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 98643
No 274
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.49 E-value=7e-14 Score=117.99 Aligned_cols=75 Identities=28% Similarity=0.462 Sum_probs=69.6
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
.+...++|||+|||.++|+++|+++|++||.|.+|.+. +|||||+|.+. ++|.+|+. |+|..++|++|.|.+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~-~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEA-ESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSH-HHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCH-HHHHHHHHHcCCCEECCeEEEEEE
Confidence 45567999999999999999999999999999999998 58999999999 99999998 999999999999999
Q ss_pred CCC
Q 013446 331 SKT 333 (443)
Q Consensus 331 S~~ 333 (443)
++.
T Consensus 100 a~~ 102 (108)
T 2jvo_A 100 SKL 102 (108)
T ss_dssp CSC
T ss_pred ecC
Confidence 853
No 275
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4.4e-14 Score=120.83 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=69.3
Q ss_pred cccceeeeeeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hC--CceeCCeeeEE
Q 013446 351 EMCARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS--GVVLGSLPIRV 426 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~-~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-ln--G~~l~Gr~L~V 426 (443)
..++++|||+|||+. +|+++|+++|++ ||.|.+|+|++ ++|||||+|.+.++|.+|++ |+ +..+.|++|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~-fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEP-YGKIKNYILMR----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTT-TSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHh-cCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 445789999999998 999999999999 99999999964 47999999999999999998 75 56799999999
Q ss_pred eecCCC
Q 013446 427 SPSKTP 432 (443)
Q Consensus 427 ~~Ak~~ 432 (443)
+||+..
T Consensus 97 ~~a~~~ 102 (112)
T 1x4f_A 97 DLSEKY 102 (112)
T ss_dssp EEECSC
T ss_pred EECccc
Confidence 999754
No 276
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=8.2e-14 Score=117.04 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=68.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCC-----cceee
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGF-----YPVRV 328 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~G-----r~I~V 328 (443)
..++|||+|||+++|+++|+++|++||.|..|.++.+ |||||+|.+. ++|++|++ |+|..+.| ++|.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~-~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRK-EDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSH-HHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCH-HHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 4699999999999999999999999999999999977 7999999999 99999999 99999999 99999
Q ss_pred cCCCC
Q 013446 329 LPSKT 333 (443)
Q Consensus 329 ~~S~~ 333 (443)
.+++.
T Consensus 88 ~~a~~ 92 (108)
T 1x4c_A 88 KVDGP 92 (108)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 99864
No 277
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.49 E-value=3.4e-14 Score=121.17 Aligned_cols=76 Identities=14% Similarity=0.068 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G-~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
...++|||+|||+++|+++|+++|++|| .|..+.+..+ .++|||||+|.+. ++|++|++ |+|..+.|++|.|.++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~--~~rGfaFV~F~~~-e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR--DFDGTGALEFPSE-EILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC--SSSCCEEEEESSH-HHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC--CCCCEEEEEECCH-HHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3568999999999999999999999999 8999988643 3689999999999 99999998 9999999999999988
Q ss_pred C
Q 013446 332 K 332 (443)
Q Consensus 332 ~ 332 (443)
+
T Consensus 103 ~ 103 (111)
T 2jvr_A 103 D 103 (111)
T ss_dssp C
T ss_pred C
Confidence 5
No 278
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.7e-13 Score=112.04 Aligned_cols=75 Identities=29% Similarity=0.396 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~~ 333 (443)
..++|||+|||+++|+++|+++|++||.|.+| +.++.+.+ ||||+|.+. ++|.+|+.|+|..++|++|.|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~-~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDV-GAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSH-HHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCH-HHHHHHHhcCCeEECCEEEEEEECCc
Confidence 45899999999999999999999999999987 44554444 999999999 99999999999999999999998753
No 279
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.49 E-value=9.1e-14 Score=114.85 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=68.4
Q ss_pred ccCCCcEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 252 EEIIRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~-~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
...+.++|||+|||. ++|+++|+++|+.||.|.+|++. +|||||+|.+. ++|.+|+. |+|..++|++|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~-~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNP-QSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSH-HHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCH-HHHHHHHHHcCCCEECCEEEEEE
Confidence 445679999999998 99999999999999999999883 68999999999 99999999 99999999999999
Q ss_pred CCC
Q 013446 330 PSK 332 (443)
Q Consensus 330 ~S~ 332 (443)
+++
T Consensus 91 ~a~ 93 (97)
T 2xnq_A 91 VSS 93 (97)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 280
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.48 E-value=4.1e-14 Score=135.15 Aligned_cols=78 Identities=17% Similarity=0.182 Sum_probs=72.6
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCC--ceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG--~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
..++|||+|||+.+|+++|+++|++ || .|..|+|+.|. +.++|||||+|.+.++|.+||+ |||..|.|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH-HCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 4679999999999999999999999 99 99999999885 7899999999999999999999 99999999999999
Q ss_pred ecCC
Q 013446 428 PSKT 431 (443)
Q Consensus 428 ~Ak~ 431 (443)
+|++
T Consensus 146 ~a~~ 149 (229)
T 3q2s_C 146 PVNK 149 (229)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 9864
No 281
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.2e-13 Score=113.80 Aligned_cols=76 Identities=25% Similarity=0.266 Sum_probs=70.1
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
..+.++|||+|||+.+|+++|+++|++||.|.+|++.++ +|||||+|.+. ++|.+|++ |+|..+.|++|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~-~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETR-TLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSS-HHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCH-HHHHHHHHHhCCCEeCCceEEEEEc
Confidence 346699999999999999999999999999999999865 57999999999 99999998 9999999999999998
Q ss_pred CC
Q 013446 332 KT 333 (443)
Q Consensus 332 ~~ 333 (443)
+.
T Consensus 87 ~~ 88 (99)
T 2cpj_A 87 CH 88 (99)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 282
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.48 E-value=4.1e-14 Score=124.52 Aligned_cols=78 Identities=26% Similarity=0.332 Sum_probs=69.8
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEE--------EEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCee
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRL--------RLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLP 423 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~v--------rI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~ 423 (443)
.+++|||+|||+.+|+++|+++|++ ||.|..+ ++. ..+.++|||||+|.+.++|.+|+. |||..++|++
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGR-YVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGG-GCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4589999999999999999999999 9988763 332 237889999999999999999999 9999999999
Q ss_pred eEEeecCCC
Q 013446 424 IRVSPSKTP 432 (443)
Q Consensus 424 L~V~~Ak~~ 432 (443)
|+|.||++.
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999865
No 283
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.5e-13 Score=111.68 Aligned_cols=75 Identities=25% Similarity=0.360 Sum_probs=69.1
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
....++|||+|||.++|+++|+++|++||.|.+|.+.+ +||||+|.+. ++|.+|+. |+|..+.|++|.|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------~~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK------DYAFVHMERA-EDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------SEEEEEESCH-HHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEECCH-HHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 44679999999999999999999999999999999973 4999999999 99999998 9999999999999998
Q ss_pred CCC
Q 013446 332 KTA 334 (443)
Q Consensus 332 ~~~ 334 (443)
+..
T Consensus 80 ~~~ 82 (92)
T 2dgt_A 80 TSR 82 (92)
T ss_dssp SCC
T ss_pred cCC
Confidence 643
No 284
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=4.7e-14 Score=119.82 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~ 332 (443)
..++|||+|||+++|+++|+++|+.| .|.+|+|+.|+ +.++|||||+|.+. ++|++|+.+++..++|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~-~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSP-QDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSH-HHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCH-HHHHHHHhcCCCeECCeEEEEEECC
Confidence 34899999999999999999999999 89999999876 45799999999999 9999999999999999999998763
No 285
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=8.4e-14 Score=121.48 Aligned_cols=77 Identities=23% Similarity=0.303 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceee
Q 013446 254 IIRRTVYVSDIDQQVTEEQLA----ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRV 328 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~----e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V 328 (443)
.+.++|||+|||+.+++++|+ ++|++||.|.+|.+..+ ..++|||||+|.+. ++|..|+. |+|..+.|++|+|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-~~~rG~aFV~F~~~-~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-DDNSGKAYIVFATQ-ESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-CSSCCCEEEEESSH-HHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-CCcCCEEEEEECCH-HHHHHHHHHHCCCEeCCCEEEE
Confidence 356899999999999999876 69999999999988642 45789999999999 99999998 9999999999999
Q ss_pred cCCC
Q 013446 329 LPSK 332 (443)
Q Consensus 329 ~~S~ 332 (443)
.+++
T Consensus 105 ~~a~ 108 (127)
T 2a3j_A 105 TFSE 108 (127)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9985
No 286
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.3e-13 Score=111.16 Aligned_cols=76 Identities=24% Similarity=0.333 Sum_probs=66.7
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecCCC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 432 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak~~ 432 (443)
..++|||+|||..+|+++|+++|++ ||.|..| +.+....+ ||||+|.+.++|.+|+.|||..++|+.|+|.++.+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLA-FGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGG-TSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcC
Confidence 4579999999999999999999999 9999987 33332223 999999999999999999999999999999998743
No 287
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.47 E-value=9.8e-14 Score=123.01 Aligned_cols=77 Identities=27% Similarity=0.338 Sum_probs=71.6
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
.....++|||+|||+++|+++|+++|++||.|.+|++..+ ++|||||+|.+. ++|.+|+. |+|..+.|++|.|.+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDP-RDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSH-HHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCH-HHHHHHHHHcCCCEECCeEEEEEE
Confidence 3446799999999999999999999999999999999877 579999999999 99999998 999999999999999
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
++
T Consensus 145 a~ 146 (150)
T 2i2y_A 145 SN 146 (150)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 288
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=112.14 Aligned_cols=75 Identities=24% Similarity=0.432 Sum_probs=69.0
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
+...++|||+|||+++|+++|+++|++||.|.+|++.+ +||||+|.+. ++|.+|+. |+|..+.|++|.|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------~~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK------DYAFVHMEKE-ADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESCH-HHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC------CEEEEEECCH-HHHHHHHHHhCCCEECCcEEEEEEC
Confidence 34679999999999999999999999999999999983 4999999999 99999999 9999999999999998
Q ss_pred CCC
Q 013446 332 KTA 334 (443)
Q Consensus 332 ~~~ 334 (443)
+..
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 289
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.47 E-value=5.2e-14 Score=128.43 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=73.4
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
....++|||+|||..+|+++|+++|++||.|.+|.+..++ +.++|||||+|.+. ++|.+|+. |+|..++|++|.|.
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDI-NVTDQAIAGLNGMQLGDKKLLVQ 189 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSS-SHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCH-HHHHHHHHHcCCCEECCEEEEEE
Confidence 3567999999999999999999999999999999999885 44699999999999 99999999 99999999999999
Q ss_pred CCC
Q 013446 330 PSK 332 (443)
Q Consensus 330 ~S~ 332 (443)
+++
T Consensus 190 ~a~ 192 (198)
T 2yh0_A 190 RAS 192 (198)
T ss_dssp ESC
T ss_pred ECC
Confidence 985
No 290
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.3e-14 Score=121.62 Aligned_cols=78 Identities=22% Similarity=0.182 Sum_probs=70.0
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEecc-C-CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-Y-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d-~-~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak 430 (443)
...+|||+|||+.+|+++|+++|+. ||.|..+.++.+ . +.++|||||+|.+.++|.+|+.|||..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKK-LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCS-SCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 4589999999999999999999999 999987444443 3 789999999999999999999999999999999999986
Q ss_pred C
Q 013446 431 T 431 (443)
Q Consensus 431 ~ 431 (443)
+
T Consensus 103 ~ 103 (124)
T 1wel_A 103 K 103 (124)
T ss_dssp H
T ss_pred H
Confidence 4
No 291
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.47 E-value=7.3e-14 Score=121.82 Aligned_cols=77 Identities=23% Similarity=0.323 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCee--EEEEecCC-CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVV--DCRICGDP-NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~--~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~ 330 (443)
...++|||+|||+++|+++|+++|+.| .|. +|+|+.|+ +.++|||||+|.+. ++|++|+++++..++|++|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~-e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQ-ELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESST-THHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCH-HHHHHHHHHCCCEECCEEEEEEE
Confidence 356899999999999999999999999 576 89998876 45799999999999 99999999888999999999987
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 63
No 292
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.47 E-value=7.1e-14 Score=128.38 Aligned_cols=83 Identities=22% Similarity=0.297 Sum_probs=76.4
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
..++|||+|||+.+|+++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..|+|+.|+|+||.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHH-TSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 3589999999999999999999999 9999999998876 7889999999999999999999 99999999999999998
Q ss_pred CCCCCC
Q 013446 431 TPVRPR 436 (443)
Q Consensus 431 ~~~~~~ 436 (443)
+.....
T Consensus 166 ~~~~~~ 171 (177)
T 2f3j_A 166 SQIDLE 171 (177)
T ss_dssp SGGGGC
T ss_pred CCCCCC
Confidence 654433
No 293
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=112.77 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=69.9
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEE-EeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR-LLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vr-I~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
..++|||+|||+.+|+++|+++|++ ||.|..++ ++.+.. .|.|||+|.+.++|.+|+. |||..++|++|+|++++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~i~~~~~--~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQ-YGVVESCEQVNTDSE--TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHH-HSCEEEEEEECCSSS--SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHh-cCCeEEEEEeecCCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4589999999999999999999999 99999995 777653 3449999999999999999 99999999999999998
Q ss_pred CC
Q 013446 431 TP 432 (443)
Q Consensus 431 ~~ 432 (443)
+.
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 294
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.5e-13 Score=113.59 Aligned_cols=78 Identities=23% Similarity=0.278 Sum_probs=68.8
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
+.+.++|||+|||+++|+++|+++|++||.| +++.+. +.++|||||+|.+. ++|++|+. |++..+.|++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASF-EDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSH-HHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCH-HHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4467999999999999999999999999976 455553 45789999999999 99999999 999999999999999
Q ss_pred CCCC
Q 013446 331 SKTA 334 (443)
Q Consensus 331 S~~~ 334 (443)
++..
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8643
No 295
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.47 E-value=2.4e-13 Score=119.17 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=69.5
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceE-EEEEeCCHHHHHHHHh-hCCceeCC--eeeEEee
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRI-AFVEFVMAESAIAALN-CSGVVLGS--LPIRVSP 428 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGf-AFVeF~t~e~A~~Al~-lnG~~l~G--r~L~V~~ 428 (443)
....|||+||++.+|+++|+++|++ ||.|.+|+++.+. +|| |||+|.+.++|.+|++ |||..|.| ++|+|+|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~-yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTT-SSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhC-cCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 4468889999999999999999999 9999999887643 677 9999999999999999 99999988 9999999
Q ss_pred cCCC
Q 013446 429 SKTP 432 (443)
Q Consensus 429 Ak~~ 432 (443)
|++.
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 9865
No 296
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.6e-13 Score=110.95 Aligned_cols=74 Identities=26% Similarity=0.395 Sum_probs=68.2
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcC--CCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGC--GQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~--G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
....++|||+|||+.+|+++|+++|++| |.|.+|++. +|||||+|.+. ++|.+|+. |+|..+.|++|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNR-EDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSH-HHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCH-HHHHHHHHHhCCCEeCCcEEEEE
Confidence 3457999999999999999999999999 999998875 47999999999 99999999 99999999999999
Q ss_pred CCCC
Q 013446 330 PSKT 333 (443)
Q Consensus 330 ~S~~ 333 (443)
+++.
T Consensus 85 ~a~~ 88 (99)
T 2cpd_A 85 LAKP 88 (99)
T ss_dssp CCCC
T ss_pred ECCC
Confidence 9864
No 297
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=4.4e-15 Score=126.17 Aligned_cols=80 Identities=26% Similarity=0.297 Sum_probs=74.1
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEE--------EEEeccC--CCCceEEEEEeCCHHHHHHHHh-hCCceeC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYR--------LRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLG 420 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~--------vrI~~d~--~~srGfAFVeF~t~e~A~~Al~-lnG~~l~ 420 (443)
...++|||+|||..+|+++|+++|++ ||.|.. ++++.+. +.++|||||+|.+.++|.+|+. |||..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 35689999999999999999999999 999998 8888774 6889999999999999999999 9999999
Q ss_pred CeeeEEeecCCC
Q 013446 421 SLPIRVSPSKTP 432 (443)
Q Consensus 421 Gr~L~V~~Ak~~ 432 (443)
|++|+|+++++.
T Consensus 84 g~~l~V~~a~~~ 95 (116)
T 2lcw_A 84 GNPIKVSFATRR 95 (116)
Confidence 999999999764
No 298
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.46 E-value=2.3e-13 Score=123.91 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=74.2
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeec
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~A 429 (443)
...++|||+|||+.+|+++|+++|++ ||.|..|+++++. +.++|||||+|.+.++|.+|+++++..++|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 45689999999999999999999999 9999999999875 67899999999999999999999999999999999998
Q ss_pred CCC
Q 013446 430 KTP 432 (443)
Q Consensus 430 k~~ 432 (443)
.+.
T Consensus 90 ~~~ 92 (196)
T 1l3k_A 90 VSR 92 (196)
T ss_dssp CC-
T ss_pred cCc
Confidence 754
No 299
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.1e-13 Score=113.68 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=68.2
Q ss_pred cCCCcEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~-~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
..+.++|||+|||+ .+|+++|+++|++||.|.+|.+. +|||||+|.+. ++|.+|+. |+|..+.|++|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNP-QSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCH-HHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCH-HHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34679999999998 99999999999999999999984 58999999999 99999999 999999999999999
Q ss_pred CCCC
Q 013446 331 SKTA 334 (443)
Q Consensus 331 S~~~ 334 (443)
++..
T Consensus 80 a~~~ 83 (96)
T 2kvi_A 80 SSSN 83 (96)
T ss_dssp EECC
T ss_pred cCcC
Confidence 8543
No 300
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.46 E-value=4.2e-14 Score=115.70 Aligned_cols=78 Identities=23% Similarity=0.412 Sum_probs=70.1
Q ss_pred cCCCcEEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCccee
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLA----ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVR 327 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~----e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~ 327 (443)
..+.++|||+|||.++|+++|+ ++|++||.|.+|.+... +.++|||||+|.+. ++|..|+. |+|..+.|++|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-~~~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-LKMRGQAFVIFKEV-SSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-HHHTTCEEEEESSH-HHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-CCcCcEEEEEeCCH-HHHHHHHHHhCCCEECCcEEE
Confidence 3467999999999999999999 99999999999988732 34579999999999 99999998 999999999999
Q ss_pred ecCCC
Q 013446 328 VLPSK 332 (443)
Q Consensus 328 V~~S~ 332 (443)
|.+++
T Consensus 83 v~~a~ 87 (97)
T 1nu4_A 83 IQYAK 87 (97)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99985
No 301
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.46 E-value=1.4e-13 Score=117.27 Aligned_cols=74 Identities=20% Similarity=0.230 Sum_probs=66.3
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCee-----eEE
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLP-----IRV 426 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~-----L~V 426 (443)
...+|||+|||+.+|+++|+++|++ ||.|..+.|+.+ |||||+|.+.++|.+|++ |||..|+|+. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGG-GSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 3589999999999999999999999 999999999776 899999999999999999 9999999998 888
Q ss_pred eecCCC
Q 013446 427 SPSKTP 432 (443)
Q Consensus 427 ~~Ak~~ 432 (443)
..+.+.
T Consensus 89 ~~~~~~ 94 (115)
T 3beg_B 89 KVDGPR 94 (115)
T ss_dssp EECC--
T ss_pred ccCCCC
Confidence 877654
No 302
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.46 E-value=5.8e-14 Score=122.49 Aligned_cols=77 Identities=25% Similarity=0.199 Sum_probs=70.3
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceE--EEEEeccC-CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeec
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVY--RLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~--~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~A 429 (443)
..++|||+|||+.+|+++|+++|++ | .|. .|+|+.|. +.++|||||+|.+.++|.+|+.+++..|+|+.|+|.++
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~-~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSG-L-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTT-S-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc-C-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 4578999999999999999999999 8 566 89998876 78999999999999999999997789999999999988
Q ss_pred CC
Q 013446 430 KT 431 (443)
Q Consensus 430 k~ 431 (443)
.+
T Consensus 119 ~~ 120 (126)
T 2hgm_A 119 SQ 120 (126)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 303
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.1e-13 Score=115.18 Aligned_cols=78 Identities=24% Similarity=0.309 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCe----eEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceee
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRV 328 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I----~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V 328 (443)
.+.++|||+|||..+|+++|+++|+.||.| ..+.+. .+.++|||||+|.+. ++|.+|+. |+|..+.|++|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~-~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNK-EIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSH-HHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCH-HHHHHHHHHhCCCEeCCcEEEE
Confidence 457999999999999999999999999988 555555 455789999999999 99999998 9999999999999
Q ss_pred cCCCCC
Q 013446 329 LPSKTA 334 (443)
Q Consensus 329 ~~S~~~ 334 (443)
.+++..
T Consensus 100 ~~a~~~ 105 (115)
T 2cpx_A 100 EFGKNK 105 (115)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 998643
No 304
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.45 E-value=2.3e-13 Score=114.39 Aligned_cols=72 Identities=22% Similarity=0.475 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 255 IRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 255 ~~~tLfVgNLp~~-tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
..++|||+|||+. +|+++|+++|++||.|.+|.+ ++|||||+|.+. ++|.+|+. |+|..+.|++|.|.+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNE-RHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSS-HHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCH-HHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4589999999999 999999999999999999988 468999999999 99999997 99999999999999985
Q ss_pred C
Q 013446 333 T 333 (443)
Q Consensus 333 ~ 333 (443)
.
T Consensus 99 ~ 99 (110)
T 1wf1_A 99 E 99 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 305
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.45 E-value=5.6e-14 Score=122.20 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=70.0
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeE--EEEecCC--CCCceEEEEEEcChHHHHHHHHH-hccc----ccCC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD--CRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGT----MLGF 323 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~--v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~----~l~G 323 (443)
+...++|||+|||+++|+++|+++|++||.|.. |+|+.|+ +.++|||||+|.+. +|.+|+. |+|. .+.|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~--~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI--EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH--HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH--HHHHHHHHhcCCCCCccCCC
Confidence 346789999999999999999999999999976 9999887 34799999999998 5667776 9999 9999
Q ss_pred cceeecCCCC
Q 013446 324 YPVRVLPSKT 333 (443)
Q Consensus 324 r~I~V~~S~~ 333 (443)
++|.|.+++.
T Consensus 98 r~l~V~~a~~ 107 (131)
T 2m2b_A 98 KTINVEFAKG 107 (131)
T ss_dssp CCCCCEECCC
T ss_pred EEEEEEECCC
Confidence 9999999854
No 306
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.45 E-value=5.3e-14 Score=116.26 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPS 331 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S 331 (443)
...++|||+|||+++|+++|+++|+.||.|.. .++.++ +.++|||||+|.+. ++|.+|++|+|..+.|++|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~-~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESA-EDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSH-HHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCH-HHHHHHHhcCCcEECCcEEEEEEc
Confidence 35689999999999999999999999998877 444443 45789999999999 999999999999999999999998
Q ss_pred C
Q 013446 332 K 332 (443)
Q Consensus 332 ~ 332 (443)
+
T Consensus 93 ~ 93 (101)
T 1fj7_A 93 K 93 (101)
T ss_dssp S
T ss_pred C
Confidence 5
No 307
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.45 E-value=2.2e-13 Score=123.88 Aligned_cols=77 Identities=19% Similarity=0.158 Sum_probs=70.0
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCC--eeeEEeec
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGS--LPIRVSPS 429 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~G--r~L~V~~A 429 (443)
...+|||+||++.+|+++|+++|++ ||.|.+|+|..+ .++|||||+|.+.++|.+|++ |||..|+| ++|+|+||
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~-fG~V~~V~i~~k--~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHH-HSCEEEEEEEES--SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHh-cCCEEEEEEEeC--CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 3578999999999999999999999 999999998654 357999999999999999999 99999966 99999999
Q ss_pred CCC
Q 013446 430 KTP 432 (443)
Q Consensus 430 k~~ 432 (443)
++.
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 865
No 308
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=6.3e-14 Score=121.65 Aligned_cols=78 Identities=22% Similarity=0.139 Sum_probs=71.1
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCce----EEEEEeccC-CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEE
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEV----YRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 426 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V----~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V 426 (443)
....+|||+|||+.+|++||+++|++ ||.| ..|+|+.+. ++++|||||+|.+.++|.+|+..|+..++|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~-~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQ-HCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHT-TSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-hCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 34589999999999999999999999 8875 688888876 78999999999999999999998999999999999
Q ss_pred eecC
Q 013446 427 SPSK 430 (443)
Q Consensus 427 ~~Ak 430 (443)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8874
No 309
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.44 E-value=5.7e-13 Score=123.88 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=72.8
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeec
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 429 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~A 429 (443)
....++|||+|||+.+|+++|+++|++ ||.|..|+++++. +.++|||||+|.+.++|.+|+.+.+..++|++|.|.++
T Consensus 106 ~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 106 DVKNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 184 (193)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHTT-SCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEET
T ss_pred ccccCEEEecCCCCcCCHHHHHHHHhc-CCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEh
Confidence 345689999999999999999999999 9999999999876 78999999999999999999994456999999999998
Q ss_pred CC
Q 013446 430 KT 431 (443)
Q Consensus 430 k~ 431 (443)
+.
T Consensus 185 ~~ 186 (193)
T 2voo_A 185 DD 186 (193)
T ss_dssp TT
T ss_pred HH
Confidence 75
No 310
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.44 E-value=3.9e-14 Score=125.52 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~-~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~ 332 (443)
...++|||+|||+++|+++|+++|++|| |.+|+|+.|+. .++|||||+|.+. ++|++|+.+++..++|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~-e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATH-EEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHH-HHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCH-HHHHHHHhhCCCEECCEEEEEEECC
Confidence 3568999999999999999999999999 67999988764 5799999999999 9999999999999999999998875
Q ss_pred C
Q 013446 333 T 333 (443)
Q Consensus 333 ~ 333 (443)
.
T Consensus 122 ~ 122 (139)
T 2hgn_A 122 T 122 (139)
T ss_dssp C
T ss_pred C
Confidence 3
No 311
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.44 E-value=2.2e-13 Score=122.96 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=72.9
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
....++|||+|||+.+|+++|.++|++||.|..|.|+.++. .++|||||+|.+. ++|.+|+. |+|..|.|++|.|.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETH-KQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSH-HHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCH-HHHHHHHHHhCCCEECCEEEEEE
Confidence 34578999999999999999999999999999999998864 4689999999999 99999998 99999999999999
Q ss_pred CCCC
Q 013446 330 PSKT 333 (443)
Q Consensus 330 ~S~~ 333 (443)
++..
T Consensus 148 ~a~~ 151 (165)
T 1rk8_A 148 WCFV 151 (165)
T ss_dssp ESEE
T ss_pred EecC
Confidence 9853
No 312
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=9e-14 Score=113.67 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=68.0
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
+...++|||+|||..+|+++|+++|+.||.|..+ ...+.++|||||+|.+. ++|.+|+. |+|..+.|++|.|.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSE-ADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSH-HHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCH-HHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3467999999999999999999999999987665 33455789999999999 99999999 9999999999999998
Q ss_pred C
Q 013446 332 K 332 (443)
Q Consensus 332 ~ 332 (443)
.
T Consensus 89 ~ 89 (96)
T 1fjc_A 89 G 89 (96)
T ss_dssp S
T ss_pred C
Confidence 5
No 313
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.44 E-value=9.6e-13 Score=120.80 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=74.2
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
....++|||+|||+.+|+++|+++|+.||.|.+|.+..++ +.++|||||+|.+. ++|.+|+. |+|..+.|++|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~-~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERR-ADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCH-HHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCH-HHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457999999999999999999999999999999999887 34789999999999 99999999 999999999999999
Q ss_pred CCCC
Q 013446 331 SKTA 334 (443)
Q Consensus 331 S~~~ 334 (443)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8543
No 314
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.44 E-value=1.6e-13 Score=130.96 Aligned_cols=77 Identities=17% Similarity=0.273 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEecCCC--CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCG--QVVDCRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G--~I~~v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
..++|||+||++.+|+++|+++|+.|| .|.+|+|+.|+. .++|||||+|.+. ++|.+||+ |++..|.|+.|.|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~-~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSE-ASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCT-THHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCH-HHHHHHHHHcCCCeECCEEeEEE
Confidence 568999999999999999999999999 999999999864 4799999999999 99999999 99999999999999
Q ss_pred CCC
Q 013446 330 PSK 332 (443)
Q Consensus 330 ~S~ 332 (443)
+++
T Consensus 146 ~a~ 148 (229)
T 3q2s_C 146 PVN 148 (229)
T ss_dssp ECC
T ss_pred ECC
Confidence 874
No 315
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.44 E-value=3.2e-13 Score=110.02 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=63.4
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecCC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 431 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak~ 431 (443)
....+|||+|||+.+|+++|+++|++ ||.|.+++|+.+ ++|||||+|.+.++|.++ .-..+.+.|++|.|.+|++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~-~G~i~~v~i~~~---srGfaFV~F~~~~~A~~~-~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQ-YGEVVDVFIPKP---FRAFAFVTFADDKVAQSL-CGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCSS---CCSEEEEEESCHHHHHHH-TTCEEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEeeC---CCCEEEEEECCHHHHHHH-cCCCcccCCEEEEEEEcCC
Confidence 34689999999999999999999999 999999999875 789999999999999843 2123456799999999975
Q ss_pred C
Q 013446 432 P 432 (443)
Q Consensus 432 ~ 432 (443)
.
T Consensus 84 k 84 (89)
T 3d2w_A 84 K 84 (89)
T ss_dssp -
T ss_pred C
Confidence 4
No 316
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=110.00 Aligned_cols=77 Identities=14% Similarity=0.285 Sum_probs=67.0
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEeecCCC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 432 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~Ak~~ 432 (443)
..++|||+|||..+|+++|+++|++ ||.|..++++.+ ++|||||+|.+.++|++|+.. +..+.|++|+|.++++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQ-YGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTT-TSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 4589999999999999999999999 999999999865 689999999999999865432 46679999999999865
Q ss_pred CC
Q 013446 433 VR 434 (443)
Q Consensus 433 ~~ 434 (443)
..
T Consensus 79 ~~ 80 (88)
T 1wf0_A 79 HN 80 (88)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 317
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.43 E-value=2.8e-13 Score=112.50 Aligned_cols=73 Identities=25% Similarity=0.415 Sum_probs=68.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKT 333 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~ 333 (443)
..++|||+|||+++|+++|+++|++||.|.+|.+. +|||||+|.+. ++|.+|+. |++..+.|++|.|.+++.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~-~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDER-DGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSH-HHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCH-HHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 56899999999999999999999999999999987 35999999999 99999999 999999999999999864
Q ss_pred C
Q 013446 334 A 334 (443)
Q Consensus 334 ~ 334 (443)
.
T Consensus 83 ~ 83 (103)
T 2dgu_A 83 P 83 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 318
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.43 E-value=7.4e-14 Score=115.60 Aligned_cols=77 Identities=19% Similarity=0.381 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~ 332 (443)
...++|||+|||+++|+++|+++|+.||.|.+|++..++ +.++|||||+|.+. ++|.+|+. ++..+.|++|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~-~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYND-VDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSC-CCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCH-HHHHHHHh-CCCeECCEEEEEEECC
Confidence 356999999999999999999999999999999999887 33689999999999 99999999 9999999999998763
No 319
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.43 E-value=4.9e-13 Score=107.01 Aligned_cols=71 Identities=24% Similarity=0.468 Sum_probs=66.2
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcC----C-------ceEEEEEeccCCCCceEEEEEeCCHHHHHHHHhhCCceeCC
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVC----G-------EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGS 421 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~f----G-------~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~lnG~~l~G 421 (443)
..++|||+|||..+|+++|+++|++ | | .|.+++++++ +|||||+|.+.++|.+|+.|||..++|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~-~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~g 79 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQG 79 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEECC
Confidence 4589999999999999999999999 8 8 8999999654 799999999999999999999999999
Q ss_pred eeeEEee
Q 013446 422 LPIRVSP 428 (443)
Q Consensus 422 r~L~V~~ 428 (443)
++|+|+.
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999974
No 320
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=3.3e-13 Score=115.40 Aligned_cols=76 Identities=18% Similarity=0.175 Sum_probs=67.8
Q ss_pred cCCCcEEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcc--cccCCcceee
Q 013446 253 EIIRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAG--TMLGFYPVRV 328 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~-tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng--~~l~Gr~I~V 328 (443)
..+.++|||+|||++ +|+++|+++|++||.|.+|++.++ +|||||+|.+. ++|..|++ |++ ..+.|++|.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~----kg~aFVef~~~-~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM----KSQAFIEMETR-EDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT----TTEEEEECSSH-HHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEECCH-HHHHHHHHHhccCCceECCEEEEE
Confidence 335799999999998 999999999999999999999754 58999999999 99999998 764 5699999999
Q ss_pred cCCCC
Q 013446 329 LPSKT 333 (443)
Q Consensus 329 ~~S~~ 333 (443)
.+++.
T Consensus 97 ~~a~~ 101 (112)
T 1x4f_A 97 DLSEK 101 (112)
T ss_dssp EEECS
T ss_pred EECcc
Confidence 99854
No 321
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.43 E-value=5.4e-13 Score=125.04 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=70.6
Q ss_pred cceeeeeeCCC-CCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 353 CARTIYCTNID-KKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 353 ~~~tIfV~NLp-~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
.+++|||+||| ..+|+++|+++|++ ||.|.+|+++++ .+|||||+|.+.++|.+|++ |||..+.|++|+|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~-~G~v~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCL-YGNVEKVKFMKS---KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTT-TSCEEEEEECTT---STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHh-cCCeEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 35799999999 89999999999999 999999999875 37999999999999999999 99999999999999997
Q ss_pred CC
Q 013446 431 TP 432 (443)
Q Consensus 431 ~~ 432 (443)
..
T Consensus 79 ~~ 80 (205)
T 3tyt_A 79 QP 80 (205)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 322
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.42 E-value=1.9e-12 Score=118.66 Aligned_cols=75 Identities=32% Similarity=0.315 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccC-CcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLG-FYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G-~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~-Gr~I~V~~ 330 (443)
.+.++|||+|||..+|+++|+++|++|| .|.+++++++. +|||||+|.+. ++|.+|+. |+|..++ |++|+|.+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~---~g~afV~f~~~-~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSV-EEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT---SSCEEEECSSH-HHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC---CcEEEEEeCCH-HHHHHHHHHhcCCccCCCCeEEEEe
Confidence 4579999999999999999999999999 99999997643 58999999999 99999999 9999999 99999999
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
++
T Consensus 194 a~ 195 (198)
T 1qm9_A 194 SK 195 (198)
T ss_dssp EC
T ss_pred ec
Confidence 85
No 323
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.1e-13 Score=110.42 Aligned_cols=75 Identities=24% Similarity=0.388 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEE-EecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCR-ICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~-i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
..++|||+|||+.+|+++|+++|+.||.|.+|+ ++.++.+ |.|||+|.+. ++|.+|+. |+|..++|++|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~--~~afV~f~~~-~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET--AVVNVTYSSK-DQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS--EEEEEEESSH-HHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC--CEEEEEECCH-HHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 468999999999999999999999999999994 7777653 4499999999 99999998 99999999999999985
No 324
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.1e-13 Score=115.92 Aligned_cols=74 Identities=14% Similarity=0.244 Sum_probs=67.7
Q ss_pred cceeeee--eCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCcee-----CCeee
Q 013446 353 CARTIYC--TNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL-----GSLPI 424 (443)
Q Consensus 353 ~~~tIfV--~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l-----~Gr~L 424 (443)
++++||| +||+..+|+++|+++|++ ||.|..|.++. .+|||||+|.+.++|.+|++ |||..+ .|++|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~-fG~v~~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHH-HSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHh-cCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 4678999 679999999999999999 99999998864 37999999999999999999 999998 79999
Q ss_pred EEeecCC
Q 013446 425 RVSPSKT 431 (443)
Q Consensus 425 ~V~~Ak~ 431 (443)
.|.|++.
T Consensus 99 ~v~~a~~ 105 (114)
T 2cq2_A 99 YLNFVEK 105 (114)
T ss_dssp EEEEESC
T ss_pred EEEeccc
Confidence 9999973
No 325
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.5e-13 Score=119.30 Aligned_cols=78 Identities=22% Similarity=0.178 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCe----eEEEEecCC-CCCceEEEEEEcChHHHHHHHHHhcccccCCcceee
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDCRICGDP-NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I----~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V 328 (443)
...++|||+|||+++|+++|+++|+.||.| ..|+|+.|+ +.++|||||+|.+. ++|.+|+..++..++|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~-~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE-EYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSH-HHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCH-HHHHHHHHhCCCeeCCeEEEE
Confidence 356899999999999999999999999975 688888775 35799999999999 999999999999999999999
Q ss_pred cCCC
Q 013446 329 LPSK 332 (443)
Q Consensus 329 ~~S~ 332 (443)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8763
No 326
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.41 E-value=1.1e-12 Score=110.59 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=70.2
Q ss_pred ccceeeeeeCCCC-----CCCHHHHHHHhhhcCCceEEEEEeccC---CCCceEEEEEeCCHHHHHHHHh-hCCceeCCe
Q 013446 352 MCARTIYCTNIDK-----KVTQADVKLFFESVCGEVYRLRLLGDY---HHSTRIAFVEFVMAESAIAALN-CSGVVLGSL 422 (443)
Q Consensus 352 ~~~~tIfV~NLp~-----~~TeedL~elF~~~fG~V~~vrI~~d~---~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr 422 (443)
.++++|+|+||.. .-++++|+++|++ ||.|.++.|++++ +.++|||||+|.+.++|.+|+. |||..++||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~-~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEK-YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGG-GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHh-cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4568999999963 2378999999999 9999999999875 4789999999999999999999 999999999
Q ss_pred eeEEeecCC
Q 013446 423 PIRVSPSKT 431 (443)
Q Consensus 423 ~L~V~~Ak~ 431 (443)
.|+|.++++
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 327
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.41 E-value=3.4e-13 Score=107.90 Aligned_cols=71 Identities=27% Similarity=0.461 Sum_probs=66.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGC----G-------QVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGF 323 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~----G-------~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~G 323 (443)
..++|||+|||+++|+++|+++|++| | .|.++++..+ +|||||+|.+. ++|.+|+.|+|..+.|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~-~~a~~A~~l~g~~~~g 79 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSV-DETTQAMAFDGIIFQG 79 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSH-HHHHHHGGGTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCH-HHHHHHHhcCCCEECC
Confidence 46999999999999999999999999 8 8999998865 58999999999 9999999999999999
Q ss_pred cceeecC
Q 013446 324 YPVRVLP 330 (443)
Q Consensus 324 r~I~V~~ 330 (443)
++|+|..
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999874
No 328
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.4e-12 Score=107.08 Aligned_cols=73 Identities=23% Similarity=0.308 Sum_probs=66.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
...++|||+|| ++|+++|+++|++||.|.+|.+. .++|||||+|.+. ++|.+|+. |+|..+.|++|.|.+++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~-~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKM-ESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSH-HHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCH-HHHHHHHHHhCCCeECCeEEEEEECC
Confidence 45689999996 89999999999999999999985 4568999999999 99999997 99999999999999985
Q ss_pred C
Q 013446 333 T 333 (443)
Q Consensus 333 ~ 333 (443)
.
T Consensus 86 ~ 86 (97)
T 1x5p_A 86 K 86 (97)
T ss_dssp S
T ss_pred C
Confidence 4
No 329
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.7e-13 Score=111.54 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=66.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcc-cccCCcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQ-VVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAG-TMLGFYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~-I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng-~~l~Gr~I~V~~ 330 (443)
...++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+. ++|.+|+. |+| ..++|++|+|.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~-~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQ-NWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCH-HHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCH-HHHHHHHHHccCCeeECCEEEEEEE
Confidence 35689999999999999999999999998 6666553 368999999999 99999998 999 999999999999
Q ss_pred CCC
Q 013446 331 SKT 333 (443)
Q Consensus 331 S~~ 333 (443)
++.
T Consensus 80 a~~ 82 (93)
T 2cqh_A 80 SVS 82 (93)
T ss_dssp CCC
T ss_pred ccC
Confidence 853
No 330
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.41 E-value=2.1e-13 Score=110.19 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=67.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKT 333 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~ 333 (443)
..++|||+|||+++|+++|+++|++| .|.++++. .++|||||+|.+. ++|.+|++ |+|..++|++|+|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~-~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNG-EQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCH-HHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCH-HHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 45899999999999999999999999 99999884 5679999999999 99999999 999999999999999853
No 331
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.41 E-value=1.3e-12 Score=123.66 Aligned_cols=75 Identities=32% Similarity=0.305 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccC-CcceeecC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLG-FYPVRVLP 330 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G-~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~-Gr~I~V~~ 330 (443)
.+.++|||+|||..+|+++|+++|++|| .|.+++++++ ++|||||+|.+. ++|.+|+. |+|..++ |++|+|.+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~---~~g~afV~f~~~-~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSV-EEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS---STTCEEEEESSH-HHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC---CCcEEEEEECCH-HHHHHHHHHHCCCccCCCCeEEEEE
Confidence 4579999999999999999999999999 9999999763 358999999999 99999999 9999999 99999999
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
++
T Consensus 225 a~ 226 (229)
T 2adc_A 225 SK 226 (229)
T ss_dssp CS
T ss_pred ec
Confidence 85
No 332
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=7.8e-13 Score=115.01 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=67.4
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceE-EEEEeCCHHHHHHHHh-hCCceeCC--eeeEEee
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRI-AFVEFVMAESAIAALN-CSGVVLGS--LPIRVSP 428 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGf-AFVeF~t~e~A~~Al~-lnG~~l~G--r~L~V~~ 428 (443)
....|||+||++.+|+++|+++|++ ||.|..|+|... +|| |||+|.+.++|.+|++ |||..|+| +.|+|+|
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~-yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNP-VGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTT-TSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHh-cCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 3456789999999999999999999 999999998653 386 9999999999999999 99999987 6999999
Q ss_pred cCCC
Q 013446 429 SKTP 432 (443)
Q Consensus 429 Ak~~ 432 (443)
|++.
T Consensus 99 Ak~~ 102 (124)
T 2e5i_A 99 ARPT 102 (124)
T ss_dssp CSCS
T ss_pred ecCC
Confidence 9875
No 333
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.11 E-value=2e-14 Score=122.01 Aligned_cols=80 Identities=23% Similarity=0.332 Sum_probs=73.0
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeE--------EEEecCCC--CCceEEEEEEcChHHHHHHHHH-hccccc
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD--------CRICGDPN--SVLRFAFIEFTDEAEGARAALN-LAGTML 321 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~--------v~i~~dk~--~skG~aFVeF~t~~e~A~~Al~-lng~~l 321 (443)
..+.++|||+|||..+|+++|+++|++||.|.. |+++.++. .++|||||+|.+. ++|.+|+. |+|..+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDP-PSAKAAIDWFDGKEF 82 (116)
Confidence 446799999999999999999999999999998 88887764 4789999999999 99999999 999999
Q ss_pred CCcceeecCCCC
Q 013446 322 GFYPVRVLPSKT 333 (443)
Q Consensus 322 ~Gr~I~V~~S~~ 333 (443)
.|++|.|.+++.
T Consensus 83 ~g~~l~V~~a~~ 94 (116)
T 2lcw_A 83 SGNPIKVSFATR 94 (116)
Confidence 999999999853
No 334
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=5.6e-13 Score=110.12 Aligned_cols=78 Identities=28% Similarity=0.371 Sum_probs=68.4
Q ss_pred ccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceee
Q 013446 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRV 328 (443)
Q Consensus 252 ~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V 328 (443)
.....++|||+|||+++|+++|+++|+.|+ .|.++.++ +.++|||||+|.+. ++|.+|+. |+|..+.|++|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSE-EDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSH-HHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCH-HHHHHHHHHhCCCeECCeEEEE
Confidence 344679999999999999999999999774 66677665 34689999999999 99999998 9999999999999
Q ss_pred cCCCC
Q 013446 329 LPSKT 333 (443)
Q Consensus 329 ~~S~~ 333 (443)
.+++.
T Consensus 87 ~~a~~ 91 (102)
T 2fc8_A 87 DWAKP 91 (102)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99864
No 335
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.40 E-value=3.8e-13 Score=140.10 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=73.5
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk--~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
..+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++ +.++|||||+|.+. ++|.+||. |+|..|.|++|.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~-e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHE-RDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccH-HHHHHHHHHcCCCEECCEEEEEE
Confidence 3456899999999999999999999999999999999886 34689999999999 99999997 99999999999999
Q ss_pred CCCC
Q 013446 330 PSKT 333 (443)
Q Consensus 330 ~S~~ 333 (443)
++..
T Consensus 178 ~a~~ 181 (437)
T 3pgw_S 178 VERG 181 (437)
T ss_pred EeCC
Confidence 9864
No 336
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.40 E-value=4.1e-13 Score=109.37 Aligned_cols=73 Identities=27% Similarity=0.411 Sum_probs=61.5
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccc--cCCcceeecC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTM--LGFYPVRVLP 330 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~--l~Gr~I~V~~ 330 (443)
+....+|||+|||+++|+++|+++|++||.|.+|+++.+ ++|||||+|.+. ++|.+ +++.. +.|+.|.|.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~-~~A~~---~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADD-KVAQS---LCGEDLIIKGISVHISN 80 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCH-HHHHH---HTTCEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCH-HHHHH---HcCCCcccCCEEEEEEE
Confidence 446799999999999999999999999999999999875 679999999999 88874 44444 5689999988
Q ss_pred CC
Q 013446 331 SK 332 (443)
Q Consensus 331 S~ 332 (443)
+.
T Consensus 81 a~ 82 (89)
T 3d2w_A 81 AE 82 (89)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 337
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.39 E-value=2.7e-13 Score=119.23 Aligned_cols=78 Identities=23% Similarity=0.277 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEE--------EEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCc
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDC--------RICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFY 324 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v--------~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr 324 (443)
.+.++|||+|||+.+|+++|+++|+.||.|..| ++. ..+.++|||||+|.+. ++|.+|+. |+|..+.|+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~-~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNE-KAAAKALKEANGYVLFGK 120 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSH-HHHHHHHHHHTTBEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCH-HHHHHHHHHhCCCEeCCc
Confidence 456899999999999999999999999988764 222 2356789999999999 99999999 999999999
Q ss_pred ceeecCCCC
Q 013446 325 PVRVLPSKT 333 (443)
Q Consensus 325 ~I~V~~S~~ 333 (443)
+|.|.+++.
T Consensus 121 ~l~V~~a~~ 129 (143)
T 3egn_A 121 PMVVQFARS 129 (143)
T ss_dssp ECEEEECCC
T ss_pred EEEEEECCC
Confidence 999999864
No 338
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.39 E-value=4.4e-13 Score=114.13 Aligned_cols=70 Identities=19% Similarity=0.151 Sum_probs=63.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
..++|||+|||+++|+++|+++|++||.|.+|.|+.+ |||||+|.+. ++|++|++ |+|..+.|++|.|.+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~-~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRK-EDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSH-HHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCH-HHHHHHHHHhCCCEECCcEeeeEE
Confidence 4589999999999999999999999999999999876 8999999999 99999999 999999999944433
No 339
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=5.5e-13 Score=114.35 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=66.8
Q ss_pred CCCcEEEE--cCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hccccc-----CCcc
Q 013446 254 IIRRTVYV--SDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTML-----GFYP 325 (443)
Q Consensus 254 ~~~~tLfV--gNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l-----~Gr~ 325 (443)
.+.++||| |||++++|+++|+++|++||.|.+|.+..+ +|||||+|.+. ++|++|++ |||..+ .|++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~----rgfaFV~f~~~-~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTT-EESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT----CSCEEEEESSH-HHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCH-HHHHHHHHHhCCCEEccccCCCcE
Confidence 45789999 779999999999999999999999988643 68999999999 99999998 999987 6899
Q ss_pred eeecCCC
Q 013446 326 VRVLPSK 332 (443)
Q Consensus 326 I~V~~S~ 332 (443)
|.|.+++
T Consensus 98 l~v~~a~ 104 (114)
T 2cq2_A 98 LYLNFVE 104 (114)
T ss_dssp CEEEEES
T ss_pred EEEEecc
Confidence 9998875
No 340
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.37 E-value=1.1e-13 Score=124.10 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
...++|||+|||..+|+++|+++|++||.|..+ ...+.++|||||+|.+. ++|.+|+. |+|..++|++|.|.+++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~-~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSE-ADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSH-HHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCH-HHHHHHHHHhCCCEECCeEEEEEecC
Confidence 356899999999999999999999999987765 44456799999999999 99999999 99999999999999985
No 341
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.36 E-value=1.1e-12 Score=113.09 Aligned_cols=74 Identities=22% Similarity=0.287 Sum_probs=68.3
Q ss_pred ccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 352 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
...++|||+|+ .+|+++|+++|++ ||.|..|.+. .++|||||+|.+.++|.+|+. |||..++|+.|+|.|++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~-~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHST-TCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHc-cCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 45689999996 6999999999999 9999999985 568999999999999999998 99999999999999998
Q ss_pred CC
Q 013446 431 TP 432 (443)
Q Consensus 431 ~~ 432 (443)
+.
T Consensus 110 ~~ 111 (121)
T 2bz2_A 110 KQ 111 (121)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 342
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.36 E-value=1.5e-12 Score=118.41 Aligned_cols=77 Identities=21% Similarity=0.157 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCC--cceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGF--YPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~G--r~I~V~~S 331 (443)
...+|||+||++.+|+++|+++|++||.|.+|++..+. ++|||||+|.+. ++|..|++ |+|..|.| ++|+|.++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~-~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADP-VSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCH-HHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCH-HHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 45789999999999999999999999999999987543 578999999999 99999999 99999965 99999998
Q ss_pred CCC
Q 013446 332 KTA 334 (443)
Q Consensus 332 ~~~ 334 (443)
+..
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 643
No 343
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=8.2e-13 Score=106.44 Aligned_cols=74 Identities=23% Similarity=0.329 Sum_probs=63.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSKT 333 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~~ 333 (443)
..++|||+|||.++|+++|+++|++||.|.+|++..+ ++|||||+|.+. ++|++|+.. ...+.|++|.|.++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~-~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADD-QIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCH-HHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCH-HHHHHHhcC-CceeCCEEEEEEecCC
Confidence 4699999999999999999999999999999999865 579999999999 988764333 3456899999998753
No 344
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=107.75 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=62.3
Q ss_pred eeeeeeCCCCCCCHHH----HHHHhhhcCC-ceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEee
Q 013446 355 RTIYCTNIDKKVTQAD----VKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 428 (443)
Q Consensus 355 ~tIfV~NLp~~~Teed----L~elF~~~fG-~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~ 428 (443)
+.|||+|||+.+++++ |+++|++ || +|.+| ..|+|||.|.+.++|.+|++ |+|..+.|++|+|+|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~-yGG~Vl~V--------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDN-CGGKVLSI--------TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHT-TTCCEEEC--------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHH-cCCeeEEE--------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 4599999999999988 5589999 95 99988 12999999999999999999 999999999999999
Q ss_pred cCCC
Q 013446 429 SKTP 432 (443)
Q Consensus 429 Ak~~ 432 (443)
|++.
T Consensus 81 A~~~ 84 (96)
T 2diu_A 81 TPKN 84 (96)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 9864
No 345
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=110.61 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=61.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEEcChHHHHHHHHH-hcccccCCcceee
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-----SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRV 328 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~-----~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V 328 (443)
..++|||+|||+++|+++|+++|++||.|. +.++.++. .++|||||+|.+. ++|++|++ |++ +.|+.+.+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~-~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEE-SSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSH-HHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCH-HHHHHHHHhhhh--cCCcEEEe
Confidence 468999999999999999999999999999 77776653 5699999999999 99999998 732 56666665
Q ss_pred cCC
Q 013446 329 LPS 331 (443)
Q Consensus 329 ~~S 331 (443)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 346
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.33 E-value=2.9e-12 Score=112.34 Aligned_cols=76 Identities=22% Similarity=0.225 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceE-EEEEEcChHHHHHHHHH-hcccccCC--cceeecC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRF-AFIEFTDEAEGARAALN-LAGTMLGF--YPVRVLP 330 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~-aFVeF~t~~e~A~~Al~-lng~~l~G--r~I~V~~ 330 (443)
....|||+||++.+|+++|.++|++||.|.+|++..+. +|| |||+|.+. ++|..|++ |+|..+.| ++|+|.+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~-~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADP-VSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCH-HHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCH-HHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 45788999999999999999999999999999887643 577 99999999 99999999 99999987 8999999
Q ss_pred CCCC
Q 013446 331 SKTA 334 (443)
Q Consensus 331 S~~~ 334 (443)
++..
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 9643
No 347
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.33 E-value=2.7e-12 Score=119.33 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHHhcccccCCcceeecCCC
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~~S~ 332 (443)
...++|||+|||+++|+++|+++|++||.|.+|++.++. +.++|||||+|.+. ++|.+|+.+.+..++|++|.|.+.+
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~-e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSI-ESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSH-HHHHHHHHCTTCEETTEECEEEETT
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCH-HHHHHHHHhCCCeECCEEEEEEEhH
Confidence 356999999999999999999999999999999999876 44799999999999 9999999955679999999999875
Q ss_pred C
Q 013446 333 T 333 (443)
Q Consensus 333 ~ 333 (443)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 3
No 348
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.33 E-value=3.6e-12 Score=123.34 Aligned_cols=80 Identities=26% Similarity=0.370 Sum_probs=73.0
Q ss_pred ccceeeeeeCCCCCCCHHHHH----HHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEE
Q 013446 352 MCARTIYCTNIDKKVTQADVK----LFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426 (443)
Q Consensus 352 ~~~~tIfV~NLp~~~TeedL~----elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V 426 (443)
...++|||+|||..+|+++|+ ++|++ ||.|..|++++ .+.++|||||+|.+.++|.+|+. |||..+.|+.|+|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~-~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQ-FGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 346899999999999999977 89999 99999999876 46789999999999999999998 9999999999999
Q ss_pred eecCCCC
Q 013446 427 SPSKTPV 433 (443)
Q Consensus 427 ~~Ak~~~ 433 (443)
.|+++..
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9997643
No 349
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=9.2e-12 Score=108.23 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=65.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceE-EEEEEcChHHHHHHHHH-hcccccCC--cceeecCC
Q 013446 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRF-AFIEFTDEAEGARAALN-LAGTMLGF--YPVRVLPS 331 (443)
Q Consensus 256 ~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~-aFVeF~t~~e~A~~Al~-lng~~l~G--r~I~V~~S 331 (443)
...|||+||++.+|+++|.++|++||.|.+|++... .|| |||+|.+. ++|..|++ |+|..|.| ++|+|.++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~-~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESV-LCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSH-HHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCH-HHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 355789999999999999999999999999998753 286 99999999 99999999 99999977 68999998
Q ss_pred CCC
Q 013446 332 KTA 334 (443)
Q Consensus 332 ~~~ 334 (443)
+..
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 643
No 350
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=3.6e-12 Score=108.04 Aligned_cols=72 Identities=13% Similarity=0.196 Sum_probs=60.1
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-----CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEE
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-----HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~-----~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V 426 (443)
..++|||+|||+.+|+++|+++|++ ||.|. +.++.+. +.++|||||+|.+.++|.+|++ |+ .++|+.|.+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRR-FGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTT-TCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHh-cCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4589999999999999999999999 99999 8777664 4789999999999999999998 72 245554444
Q ss_pred ee
Q 013446 427 SP 428 (443)
Q Consensus 427 ~~ 428 (443)
..
T Consensus 83 ~~ 84 (114)
T 2dnl_A 83 VS 84 (114)
T ss_dssp EC
T ss_pred cc
Confidence 43
No 351
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.33 E-value=2.7e-12 Score=110.64 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=67.2
Q ss_pred cCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCC
Q 013446 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPS 331 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S 331 (443)
+...++|||+|| ++|+++|+++|++||.|.+|.+. .++|||||+|.+. ++|.+|+. |+|..+.|++|.|.++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~-~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKM-ESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSH-HHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCH-HHHHHHHHHhCCCEECCeEEEEEEe
Confidence 346799999996 69999999999999999999986 4568999999999 99999997 9999999999999998
Q ss_pred CC
Q 013446 332 KT 333 (443)
Q Consensus 332 ~~ 333 (443)
+.
T Consensus 109 ~~ 110 (121)
T 2bz2_A 109 RK 110 (121)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 352
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=9.9e-12 Score=105.10 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=68.5
Q ss_pred ccccceeeeeeCCCCCC-----------CHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCc
Q 013446 350 REMCARTIYCTNIDKKV-----------TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGV 417 (443)
Q Consensus 350 ~~~~~~tIfV~NLp~~~-----------TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~ 417 (443)
....+++|+|+||.... ++++|+++|++ ||.|..|.| .+. .++|||||+|.+.++|.+|+. |||.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~-~G~v~~v~i-~~~-~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK-FGQIRKLLL-FDR-HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG-TSCCSEEEE-ETT-CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc-cCCEeEEEE-ecC-CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34457899999995433 26899999999 999999966 443 479999999999999999998 9999
Q ss_pred eeCCeeeEEeecCCC
Q 013446 418 VLGSLPIRVSPSKTP 432 (443)
Q Consensus 418 ~l~Gr~L~V~~Ak~~ 432 (443)
.++|++|+|.|+++.
T Consensus 88 ~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 88 WFGGRQITAQAWDGT 102 (112)
T ss_dssp EETTEECEEEECCSC
T ss_pred EECCcEEEEEEeCCC
Confidence 999999999999764
No 353
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=7e-12 Score=103.75 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=61.3
Q ss_pred cEEEEcCCCCCCcHHH----HHHHhhcC-CCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 257 RTVYVSDIDQQVTEEQ----LAALFVGC-GQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 257 ~tLfVgNLp~~tTeee----L~e~F~~~-G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
++|||+|||+.+++++ |.++|++| |.|.+|. .|+|||.|.+. ++|.+|++ |+|..+.|++|+|.+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--------gG~AfV~F~~~-esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--------GCSAILRFINQ-DSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--------TTCEEEEESSH-HHHHHHHHHHTTCCSSSSCCEEES
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--------cCEEEEEECCH-HHHHHHHHHhcCCccCCceEEEEe
Confidence 4499999999999988 55899999 5999981 29999999999 99999998 999999999999999
Q ss_pred CCC
Q 013446 331 SKT 333 (443)
Q Consensus 331 S~~ 333 (443)
++.
T Consensus 81 A~~ 83 (96)
T 2diu_A 81 TPK 83 (96)
T ss_dssp SCC
T ss_pred cCC
Confidence 864
No 354
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.30 E-value=3.2e-12 Score=123.03 Aligned_cols=80 Identities=24% Similarity=0.358 Sum_probs=68.8
Q ss_pred cceeeeeeCCCCCC---------CHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCcee---
Q 013446 353 CARTIYCTNIDKKV---------TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL--- 419 (443)
Q Consensus 353 ~~~tIfV~NLp~~~---------TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l--- 419 (443)
..++|||+||+..+ ++++|+++|++ ||.|.+|+|+. ++|||||+|.+.++|+.|++ |+|..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~-fG~I~~v~v~~----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSR-LGDIDRIRYVE----SKNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHT-TSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHc-cCCEEEEEEEC----CCCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 46899999999998 79999999999 99999999975 47999999999999999999 999999
Q ss_pred ---------CCeeeEEeecCCCCCCCC
Q 013446 420 ---------GSLPIRVSPSKTPVRPRA 437 (443)
Q Consensus 420 ---------~Gr~L~V~~Ak~~~~~~~ 437 (443)
.|+.|.|.||+....|..
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~pnp~~ 234 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDPDPAA 234 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC-------
T ss_pred ccccccccCCCCEEEEEEccCCCCHHH
Confidence 899999999986544433
No 355
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.29 E-value=9.7e-12 Score=104.74 Aligned_cols=79 Identities=22% Similarity=0.201 Sum_probs=69.6
Q ss_pred cCCCcEEEEcCCCC-----CCcHHHHHHHhhcCCCeeEEEEecCCC---CCceEEEEEEcChHHHHHHHHH-hcccccCC
Q 013446 253 EIIRRTVYVSDIDQ-----QVTEEQLAALFVGCGQVVDCRICGDPN---SVLRFAFIEFTDEAEGARAALN-LAGTMLGF 323 (443)
Q Consensus 253 ~~~~~tLfVgNLp~-----~tTeeeL~e~F~~~G~I~~v~i~~dk~---~skG~aFVeF~t~~e~A~~Al~-lng~~l~G 323 (443)
..++++|+|+||.. +.++++|++.|++||.|.+|.|+.++. .++|||||+|.+. ++|.+|+. |||..++|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~-~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERV-ESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSH-HHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCH-HHHHHHHHHHCCCEECC
Confidence 34679999999963 347999999999999999999998763 4799999999999 99999998 99999999
Q ss_pred cceeecCCC
Q 013446 324 YPVRVLPSK 332 (443)
Q Consensus 324 r~I~V~~S~ 332 (443)
++|.|.++.
T Consensus 84 r~i~v~~a~ 92 (105)
T 2pe8_A 84 RVVKACFYN 92 (105)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 999999874
No 356
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.28 E-value=8.7e-12 Score=104.97 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=67.6
Q ss_pred cceeeeeeCC--CCCC--------CHHHHHHHhhhcCCceEEEEEeccC----CCCceEEEEEeCCHHHHHHHHh-hCCc
Q 013446 353 CARTIYCTNI--DKKV--------TQADVKLFFESVCGEVYRLRLLGDY----HHSTRIAFVEFVMAESAIAALN-CSGV 417 (443)
Q Consensus 353 ~~~tIfV~NL--p~~~--------TeedL~elF~~~fG~V~~vrI~~d~----~~srGfAFVeF~t~e~A~~Al~-lnG~ 417 (443)
+++.|.+.|+ |..+ .++||+++|++ ||.|.+|.|+++. +.++|+|||+|.+.++|.+|+. |||.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k-~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT-TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHc-cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4678899998 3333 34799999999 9999999999876 2579999999999999999999 9999
Q ss_pred eeCCeeeEEeecCC
Q 013446 418 VLGSLPIRVSPSKT 431 (443)
Q Consensus 418 ~l~Gr~L~V~~Ak~ 431 (443)
.++||.|+|+|+.+
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999863
No 357
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.27 E-value=4.5e-12 Score=110.75 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=66.1
Q ss_pred cEEEEcCC----CCCCcHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEEcC----hHHH---HHHHHH---hcccc
Q 013446 257 RTVYVSDI----DQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD----EAEG---ARAALN---LAGTM 320 (443)
Q Consensus 257 ~tLfVgNL----p~~tTeeeL~e~F~~~G~I~~v~i~~dk~~--skG~aFVeF~t----~~e~---A~~Al~---lng~~ 320 (443)
..|||+|| |+.+++++|+++|+.||+|.+|.++.|+.+ |+|||||+|.+ +.++ |.+|+. ++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999999966 79999999995 2022 677765 69999
Q ss_pred cCCcceeecCCC
Q 013446 321 LGFYPVRVLPSK 332 (443)
Q Consensus 321 l~Gr~I~V~~S~ 332 (443)
++|++|+|.+-+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999764
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.26 E-value=7.5e-12 Score=109.34 Aligned_cols=76 Identities=16% Similarity=0.296 Sum_probs=67.4
Q ss_pred eeeeeeCC----CCCCCHHHHHHHhhhcCCceEEEEEeccC--CCCceEEEEEeCC----HHH----HHHHHh---hCCc
Q 013446 355 RTIYCTNI----DKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVM----AES----AIAALN---CSGV 417 (443)
Q Consensus 355 ~tIfV~NL----p~~~TeedL~elF~~~fG~V~~vrI~~d~--~~srGfAFVeF~t----~e~----A~~Al~---lnG~ 417 (443)
++|||+|| |+.+++.+|+++|++ ||+|.++.++.|+ +.++|||||+|.+ +++ |.+|+. ++|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~-fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKK-YGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHT-TSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 999999999999999 9999999999998 7999999999996 333 788875 6999
Q ss_pred eeCCeeeEEeecCC
Q 013446 418 VLGSLPIRVSPSKT 431 (443)
Q Consensus 418 ~l~Gr~L~V~~Ak~ 431 (443)
.|+|++|+|.+-+.
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998654
No 359
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.26 E-value=1.4e-11 Score=118.74 Aligned_cols=76 Identities=21% Similarity=0.294 Sum_probs=70.4
Q ss_pred cccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeec
Q 013446 351 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 429 (443)
Q Consensus 351 ~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~A 429 (443)
....++|||+|||+.+|+++|+++|++ ||.|..|.+.+ ++|||||+|.+.++|.+|+. |+|..+.|+.|+|.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFER-YGEPSEVFINR----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGG-GCCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEeC----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 345689999999999999999999999 99999999954 47999999999999999999 9999999999999998
Q ss_pred CC
Q 013446 430 KT 431 (443)
Q Consensus 430 k~ 431 (443)
.+
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.25 E-value=3.9e-12 Score=106.89 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=60.1
Q ss_pred eeCCCCCCCHHHHHHHh------------hhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeee
Q 013446 359 CTNIDKKVTQADVKLFF------------ESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPI 424 (443)
Q Consensus 359 V~NLp~~~TeedL~elF------------~~~fG~V~~vrI~~d~-~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L 424 (443)
+.|||..+++++|++.| ++ ||.|.+|.|+++. ++++|||||+|.+.++|.+|+. |||..++|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~-~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEK-YGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhcc-CCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 34555666666666555 98 9999999999876 6889999999999999999999 99999999999
Q ss_pred EEeec
Q 013446 425 RVSPS 429 (443)
Q Consensus 425 ~V~~A 429 (443)
+|+|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=3.6e-11 Score=101.60 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=66.7
Q ss_pred cCCCcEEEEcCCCCCC-----------cHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccc
Q 013446 253 EIIRRTVYVSDIDQQV-----------TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTM 320 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~t-----------TeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~ 320 (443)
+.++++|+|.||.... ++++|+++|++||.|.+|.| .++ .++|||||+|.+. ++|.+|+. |+|..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~-~~~G~afV~f~~~-~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR-HPDGVASVSFRDP-EEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT-CTTCEEEEECSCH-HHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC-CCCEEEEEEECCH-HHHHHHHHHcCCCE
Confidence 4467999999995443 26899999999999999966 444 3789999999999 99999998 99999
Q ss_pred cCCcceeecCCC
Q 013446 321 LGFYPVRVLPSK 332 (443)
Q Consensus 321 l~Gr~I~V~~S~ 332 (443)
++|++|.|.++.
T Consensus 89 ~~gr~l~v~~a~ 100 (112)
T 2dit_A 89 FGGRQITAQAWD 100 (112)
T ss_dssp ETTEECEEEECC
T ss_pred ECCcEEEEEEeC
Confidence 999999999974
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.20 E-value=2.1e-11 Score=117.36 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=69.3
Q ss_pred cCCCcEEEEcCCCCCC---------cHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hccccc-
Q 013446 253 EIIRRTVYVSDIDQQV---------TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTML- 321 (443)
Q Consensus 253 ~~~~~tLfVgNLp~~t---------TeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l- 321 (443)
....++||||||+..+ |+++|+++|++||.|.+|+|+.+ +|||||+|.+. ++|+.|++ |+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~----kG~AFV~F~~~-~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES----KNCGFVKFKYQ-ANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSH-HHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC----CCEEEEEeCCH-HHHHHHHHHhCCCEEe
Confidence 3457999999999998 89999999999999999999864 58999999999 99999998 999999
Q ss_pred -----------CCcceeecCCCCC
Q 013446 322 -----------GFYPVRVLPSKTA 334 (443)
Q Consensus 322 -----------~Gr~I~V~~S~~~ 334 (443)
.|+.|.|.|++..
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC--
T ss_pred ccccccccccCCCCEEEEEEccCC
Confidence 8999999999643
No 363
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.19 E-value=4.4e-11 Score=102.95 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=67.9
Q ss_pred ccceeeeeeCCCC--C---CCHHHHHHHhhhcCCceEEEEEeccC------CCCceEEEEEeCCHHHHHHHHh-hCCcee
Q 013446 352 MCARTIYCTNIDK--K---VTQADVKLFFESVCGEVYRLRLLGDY------HHSTRIAFVEFVMAESAIAALN-CSGVVL 419 (443)
Q Consensus 352 ~~~~tIfV~NLp~--~---~TeedL~elF~~~fG~V~~vrI~~d~------~~srGfAFVeF~t~e~A~~Al~-lnG~~l 419 (443)
.++++|+|.|+-. + -.++||+++|++ ||.|.+|.|+++. +.++|++||+|.+.++|.+|+. |||..+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k-~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTT-TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhc-cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 3578999999843 2 236899999999 9999999998874 2467999999999999999999 999999
Q ss_pred CCeeeEEeecC
Q 013446 420 GSLPIRVSPSK 430 (443)
Q Consensus 420 ~Gr~L~V~~Ak 430 (443)
+||.|+|.|+.
T Consensus 97 ~GR~i~v~~~~ 107 (118)
T 3ue2_A 97 AGRKVVAEVYD 107 (118)
T ss_dssp TTEECEEEEEC
T ss_pred CCcEEEEEEcC
Confidence 99999999975
No 364
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.9e-10 Score=96.10 Aligned_cols=63 Identities=24% Similarity=0.266 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecCCC
Q 013446 364 KKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 432 (443)
Q Consensus 364 ~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak~~ 432 (443)
..+|+++|+++|++ ||.|..|.|+ +.++|||||+|.+.++|..|+. +++ +.|++|+|+|+++.
T Consensus 27 ~~~te~~L~~~F~~-~G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK-YGEVLNLVLS---SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHT-TSCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHh-cCCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 56899999999999 9999999997 3679999999999999999999 655 67999999999865
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.10 E-value=3.3e-11 Score=101.19 Aligned_cols=70 Identities=17% Similarity=0.358 Sum_probs=61.6
Q ss_pred EcCCCCCCcHHHHHHHh------------hcCCCeeEEEEecCC-CCCceEEEEEEcChHHHHHHHHH-hcccccCCcce
Q 013446 261 VSDIDQQVTEEQLAALF------------VGCGQVVDCRICGDP-NSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPV 326 (443)
Q Consensus 261 VgNLp~~tTeeeL~e~F------------~~~G~I~~v~i~~dk-~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I 326 (443)
+.||++.+|+++|++.| ++||.|.+|.|+++. +.++|||||+|.+. ++|.+|+. |||..++|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~-~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE-EDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCH-HHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCH-HHHHHHHHHHCCCEECCEEE
Confidence 56777888888877766 999999999999876 35799999999999 99999998 99999999999
Q ss_pred eecCC
Q 013446 327 RVLPS 331 (443)
Q Consensus 327 ~V~~S 331 (443)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.09 E-value=2.8e-10 Score=97.39 Aligned_cols=75 Identities=17% Similarity=0.122 Sum_probs=64.3
Q ss_pred cceeeeeeCCCCCC----------CHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCC
Q 013446 353 CARTIYCTNIDKKV----------TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGS 421 (443)
Q Consensus 353 ~~~tIfV~NLp~~~----------TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~G 421 (443)
.+++|.+.|+-..- .++||+++|++ ||.|.+|.|+++. ++|+|||+|.+.++|.+|+. |||..++|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~k-fG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNK-HGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTT-TTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhc-cCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45788888874322 23688999999 9999999997763 58999999999999999999 99999999
Q ss_pred eeeEEeecC
Q 013446 422 LPIRVSPSK 430 (443)
Q Consensus 422 r~L~V~~Ak 430 (443)
|.|+|+|+.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999984
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.06 E-value=2e-10 Score=96.52 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=66.8
Q ss_pred CCcEEEEcCC--CCCC--------cHHHHHHHhhcCCCeeEEEEecCCC----CCceEEEEEEcChHHHHHHHHH-hccc
Q 013446 255 IRRTVYVSDI--DQQV--------TEEQLAALFVGCGQVVDCRICGDPN----SVLRFAFIEFTDEAEGARAALN-LAGT 319 (443)
Q Consensus 255 ~~~tLfVgNL--p~~t--------TeeeL~e~F~~~G~I~~v~i~~dk~----~skG~aFVeF~t~~e~A~~Al~-lng~ 319 (443)
+++.|.+.|+ +.+. ++++|++.|++||.|.+|.|.+++. .++|||||+|.+. ++|.+|+. |||.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~-~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSV-FDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSH-HHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCH-HHHHHHHHHhCCC
Confidence 5789999998 3233 3479999999999999999988764 3689999999999 99999998 9999
Q ss_pred ccCCcceeecCCC
Q 013446 320 MLGFYPVRVLPSK 332 (443)
Q Consensus 320 ~l~Gr~I~V~~S~ 332 (443)
.++|++|.|.++.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999863
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.04 E-value=3.3e-10 Score=114.41 Aligned_cols=74 Identities=15% Similarity=0.237 Sum_probs=64.8
Q ss_pred ccceeeeeeC--CCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeC---Ce--e
Q 013446 352 MCARTIYCTN--IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLG---SL--P 423 (443)
Q Consensus 352 ~~~~tIfV~N--Lp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~---Gr--~ 423 (443)
.++.+|||+| |++.+|+++|+++|++ ||+|.+|.++. +||||||+|.+.++|++|++ |||..+. |+ .
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHT-TSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHh-cCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 4568999999 5789999999999999 99999998854 57999999999999999999 9998873 44 6
Q ss_pred eEEeecC
Q 013446 424 IRVSPSK 430 (443)
Q Consensus 424 L~V~~Ak 430 (443)
|.|.|++
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 8888875
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.00 E-value=5.3e-10 Score=96.14 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCC-----CCcHHHHHHHhhcCCCeeEEEEecCCC------CCceEEEEEEcChHHHHHHHHH-hcccccC
Q 013446 255 IRRTVYVSDIDQ-----QVTEEQLAALFVGCGQVVDCRICGDPN------SVLRFAFIEFTDEAEGARAALN-LAGTMLG 322 (443)
Q Consensus 255 ~~~tLfVgNLp~-----~tTeeeL~e~F~~~G~I~~v~i~~dk~------~skG~aFVeF~t~~e~A~~Al~-lng~~l~ 322 (443)
++++|++.|+-. +-.+++|++.|++||.|.+|.|+.++. .++|++||+|.+. ++|.+|+. |||..++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~-e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIA-SETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSH-HHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCH-HHHHHHHHHHCCCEEC
Confidence 679999999842 235899999999999999999997653 2579999999999 99999999 9999999
Q ss_pred CcceeecCCC
Q 013446 323 FYPVRVLPSK 332 (443)
Q Consensus 323 Gr~I~V~~S~ 332 (443)
|++|.|.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999863
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.99 E-value=5.2e-10 Score=112.98 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=64.1
Q ss_pred cCCCcEEEEcC--CCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccC---Cc--
Q 013446 253 EIIRRTVYVSD--IDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLG---FY-- 324 (443)
Q Consensus 253 ~~~~~tLfVgN--Lp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~---Gr-- 324 (443)
..++.+|||+| |++.+||++|+++|++||.|.+|.+.+ ++|||||+|.+. ++|++|++ |||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~-~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTT-EESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSH-HHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCH-HHHHHHHHHhCCCccccccCCce
Confidence 45679999999 578999999999999999999987754 468999999999 99999999 9998872 44
Q ss_pred ceeecCCC
Q 013446 325 PVRVLPSK 332 (443)
Q Consensus 325 ~I~V~~S~ 332 (443)
+|.|.+..
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 67777764
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=9.3e-09 Score=85.83 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=54.8
Q ss_pred CCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCCC
Q 013446 266 QQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSKT 333 (443)
Q Consensus 266 ~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~~ 333 (443)
..+|+++|+++|++||.|.+|.|+. .++|||||+|.+. ++|..|+. +++ +.|++|+|.+++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~-~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATV-KAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCH-HHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCH-HHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 5689999999999999999999983 5689999999999 99999999 444 6799999999853
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.85 E-value=5.9e-09 Score=89.08 Aligned_cols=76 Identities=13% Similarity=0.108 Sum_probs=64.2
Q ss_pred CCCcEEEEcCCCCC----------CcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccC
Q 013446 254 IIRRTVYVSDIDQQ----------VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLG 322 (443)
Q Consensus 254 ~~~~tLfVgNLp~~----------tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~ 322 (443)
.+++.|.+.|+=.. -.+++|++.|++||.|.+|.+.++ +++|||||+|.+. ++|.+|+. |||..++
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~--~~~G~~fV~f~~~-e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN--SAQGNVYVKCPSI-AAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT--CTTCCEEEECSSH-HHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC--CCcEEEEEEECCH-HHHHHHHHHhCCCEEC
Confidence 45788889888321 135688999999999999998755 3589999999999 99999998 9999999
Q ss_pred CcceeecCCC
Q 013446 323 FYPVRVLPSK 332 (443)
Q Consensus 323 Gr~I~V~~S~ 332 (443)
|++|.|.++.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999863
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=2.2e-08 Score=82.03 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=61.1
Q ss_pred ceeeeeeCCC----CCCCH----HHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeE
Q 013446 354 ARTIYCTNID----KKVTQ----ADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIR 425 (443)
Q Consensus 354 ~~tIfV~NLp----~~~Te----edL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~ 425 (443)
..||+|.-.+ .++-+ .+|.+.|.+ ||.|..+++..|. +||+|.+.++|.+|++|||..++||.|+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFAS-FGEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRTIT 79 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHT-TCCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHh-CCCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeEEE
Confidence 3577777655 23333 678899999 9999999998764 8999999999999999999999999999
Q ss_pred EeecCCC
Q 013446 426 VSPSKTP 432 (443)
Q Consensus 426 V~~Ak~~ 432 (443)
|+++.|.
T Consensus 80 V~lkt~d 86 (91)
T 2dnr_A 80 IALKSPS 86 (91)
T ss_dssp EEECCCS
T ss_pred EEeCCCC
Confidence 9998764
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=6.9e-08 Score=83.40 Aligned_cols=73 Identities=16% Similarity=0.054 Sum_probs=63.9
Q ss_pred CCCcEEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcC-hHHHHHHHHH-h--cccccCCcceee
Q 013446 254 IIRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTD-EAEGARAALN-L--AGTMLGFYPVRV 328 (443)
Q Consensus 254 ~~~~tLfVgNLp~~-tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t-~~e~A~~Al~-l--ng~~l~Gr~I~V 328 (443)
..++.|||+||+.. +++++|+++|++||.|..|.+..+.. .|||+|.+ . ++|..|+. + .+..|.|..+.+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~----tgfVrf~~~~-~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK----EGIILFKEKA-KEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS----EEEEEESSCH-HHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC----EEEEEECCCh-HHHHHHHHHhhcCCcEEeCcEEEE
Confidence 35799999999999 99999999999999999999998876 79999999 7 78888887 7 467888888887
Q ss_pred cCC
Q 013446 329 LPS 331 (443)
Q Consensus 329 ~~S 331 (443)
...
T Consensus 91 evL 93 (121)
T 1owx_A 91 EVL 93 (121)
T ss_dssp EEC
T ss_pred EEC
Confidence 654
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.54 E-value=1.1e-07 Score=89.00 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=58.3
Q ss_pred CCHHHHHHHhhhcCCceEEEEEeccC------CCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEeecC
Q 013446 366 VTQADVKLFFESVCGEVYRLRLLGDY------HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 430 (443)
Q Consensus 366 ~TeedL~elF~~~fG~V~~vrI~~d~------~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~~Ak 430 (443)
-.+++|++.|++ ||.|.++.|+++. ++++|++||+|.+.++|.+|+. |||..++||.|.+.|+.
T Consensus 141 e~~~dl~~e~~~-~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTT-TSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHc-cCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 466899999999 9999999998653 3789999999999999999999 99999999999999975
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=1.5e-07 Score=77.04 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=61.0
Q ss_pred CCcEEEEcCCCC----CCcH----HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcce
Q 013446 255 IRRTVYVSDIDQ----QVTE----EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPV 326 (443)
Q Consensus 255 ~~~tLfVgNLp~----~tTe----eeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I 326 (443)
+..||+|.-.+. ..-. .+|.+.|.+||.|..+++..|+ +||+|.+. ++|.+|+.|+|..++|+.|
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~-~sAlaAi~mnG~~v~Gr~L 78 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEG-SSALNVLSLNGKELLNRTI 78 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSH-HHHHHGGGGTTCEETTEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECCh-HHHHHHHhcCCeEeCCeEE
Confidence 457888887762 2333 6788999999999999999764 89999999 9999999999999999999
Q ss_pred eecCCC
Q 013446 327 RVLPSK 332 (443)
Q Consensus 327 ~V~~S~ 332 (443)
+|++.+
T Consensus 79 kV~lkt 84 (91)
T 2dnr_A 79 TIALKS 84 (91)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 999874
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=2.1e-07 Score=80.33 Aligned_cols=73 Identities=11% Similarity=0.166 Sum_probs=63.7
Q ss_pred ccceeeeeeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCC-HHHHHHHHh-hC--CceeCCeeeEE
Q 013446 352 MCARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM-AESAIAALN-CS--GVVLGSLPIRV 426 (443)
Q Consensus 352 ~~~~tIfV~NLp~~-~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t-~e~A~~Al~-ln--G~~l~Gr~L~V 426 (443)
.....|+|+||+.. +++++|+++|++ ||.|.+|.+.++. ..|||+|.+ .++|..|+. +| +..|.|..+++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~-~G~V~~Vd~~~g~----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSN-HGEIKWIDFVRGA----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCS-SCCEEEEECCTTC----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHh-cCCEEEEEEecCC----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 34589999999999 999999999999 9999999997764 269999999 899999998 74 78999988888
Q ss_pred eec
Q 013446 427 SPS 429 (443)
Q Consensus 427 ~~A 429 (443)
+..
T Consensus 91 evL 93 (121)
T 1owx_A 91 EVL 93 (121)
T ss_dssp EEC
T ss_pred EEC
Confidence 654
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=2.3e-07 Score=76.40 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=60.2
Q ss_pred cceeeeeeCCCCC-----CCH----HHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHhhCCceeCCee
Q 013446 353 CARTIYCTNIDKK-----VTQ----ADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLP 423 (443)
Q Consensus 353 ~~~tIfV~NLp~~-----~Te----edL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~ 423 (443)
+..||+|.-++.. +-+ .+|.+.|.. ||.|..+++..|. +||+|.+.++|.+|++|+|..++||.
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGS-YGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHH-HSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHH-CCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 3468888877632 322 568899999 9999999998874 99999999999999999999999999
Q ss_pred eEEeecC
Q 013446 424 IRVSPSK 430 (443)
Q Consensus 424 L~V~~Ak 430 (443)
|+|++-.
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9999843
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.33 E-value=7e-07 Score=73.57 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=60.6
Q ss_pred CCcEEEEcCCCCC-----CcH----HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcc
Q 013446 255 IRRTVYVSDIDQQ-----VTE----EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYP 325 (443)
Q Consensus 255 ~~~tLfVgNLp~~-----tTe----eeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~ 325 (443)
+..||+|.-++.. .-. .+|.+.|..||.|..+++..|+ +||+|.+. ++|.+|++|+|..++|+.
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~-~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADS-HSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCS-HHHHHHHHGGGSEETTEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcCh-HHHHHHHhcCCeeeCCeE
Confidence 5689999988643 222 5688999999999999999775 99999999 999999999999999999
Q ss_pred eeecCC
Q 013446 326 VRVLPS 331 (443)
Q Consensus 326 I~V~~S 331 (443)
|+|++-
T Consensus 87 L~V~~k 92 (95)
T 1ufw_A 87 VKISGP 92 (95)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999874
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.24 E-value=1.3e-06 Score=81.68 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=57.1
Q ss_pred CcHHHHHHHhhcCCCeeEEEEecCCC------CCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecCCC
Q 013446 268 VTEEQLAALFVGCGQVVDCRICGDPN------SVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLPSK 332 (443)
Q Consensus 268 tTeeeL~e~F~~~G~I~~v~i~~dk~------~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~S~ 332 (443)
-.+++|.+.|++||.|.++.++.+.. .++|++||+|.+. ++|.+|+. |+|..++|++|.+.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~-~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIA-SETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSH-HHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCH-HHHHHHHHHhcCceECCeEEEEEEcC
Confidence 36789999999999999999985432 4689999999999 99999999 99999999999999873
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=5.9e-05 Score=63.64 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=63.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcC-----CCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcceee
Q 013446 254 IIRRTVYVSDIDQQVTEEQLAALFVGC-----GQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRV 328 (443)
Q Consensus 254 ~~~~tLfVgNLp~~tTeeeL~e~F~~~-----G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V 328 (443)
...++|=+-|||..+++..|+.+..++ |.|..+.+.+|-+ -|+|+|.+.+.++.+++.|+|..+.|++|++
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC----ceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 346899999999999999999999999 9999999998864 8999999994445555569999999999987
Q ss_pred cC
Q 013446 329 LP 330 (443)
Q Consensus 329 ~~ 330 (443)
.-
T Consensus 95 gT 96 (117)
T 2l9w_A 95 GT 96 (117)
T ss_dssp EC
T ss_pred cC
Confidence 53
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00015 Score=61.15 Aligned_cols=70 Identities=19% Similarity=0.228 Sum_probs=63.6
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcC-----CceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEEe
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVC-----GEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 427 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~f-----G~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V~ 427 (443)
.++|-+-|||..+++..|+.+.++ + |.+..+.+..|. +=|+|+|.+...|.+|.- |+|..|.|+.|++.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~-~~~i~~g~i~KI~L~pDH----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQE-EIHINEKDIRKILLVSDF----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHH-HTCCCTTTCSEEEEETTT----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhh-hhccCccceeEEEEecCC----CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 578899999999999999999999 9 999999887774 569999999999999987 99999999999985
Q ss_pred e
Q 013446 428 P 428 (443)
Q Consensus 428 ~ 428 (443)
-
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 4
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=0.0011 Score=55.31 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhc----C-CCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCCcceeec
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVG----C-GQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGFYPVRVL 329 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~----~-G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~Gr~I~V~ 329 (443)
...+|.|.|||..+.++.|.-+|++ - |+|.++.... +-|+|+|.+. +.|++.++.....+.+.+|.|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~-~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREP-ADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSH-HHHHHHHTCSCCBSSSSBCEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcCh-HHHHHHhcCCcceecCeEEEEE
Confidence 4589999999999999999999986 2 5888887764 3799999999 9999999877888999999997
Q ss_pred CCCCCcCCCCCCCCCCCcccccccceeeeeeCCCCCCC
Q 013446 330 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT 367 (443)
Q Consensus 330 ~S~~~~~p~~~~~~~~~~~~~~~~~~tIfV~NLp~~~T 367 (443)
+.- .....+++++||++.++
T Consensus 80 P~~------------------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PAP------------------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp ECC------------------CCCCCCCCCCSCCCCCC
T ss_pred cCC------------------CCCcceEeeecCCCCCC
Confidence 641 11246888999988764
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.98 E-value=0.0016 Score=54.30 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=62.2
Q ss_pred cceeeeeeCCCCCC-C----HHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hCCceeCCeeeEE
Q 013446 353 CARTIYCTNIDKKV-T----QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRV 426 (443)
Q Consensus 353 ~~~tIfV~NLp~~~-T----eedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr~L~V 426 (443)
..++|+|.||+..+ + .+.++++|.. |+++......+... =..|.|.++++|.+|.. |++..++|.+|+|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~-~~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRT-YDKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHT-TCSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHh-hCcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 35789999998754 2 2567899998 89888887766652 35899999999999998 9999999999999
Q ss_pred eecCCC
Q 013446 427 SPSKTP 432 (443)
Q Consensus 427 ~~Ak~~ 432 (443)
-++++.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 999843
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.50 E-value=0.023 Score=47.26 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=59.3
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhc----CCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHhhCCceeCCeeeEEee
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESV----CGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 428 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~----fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~lnG~~l~Gr~L~V~~ 428 (443)
...+|.|.|||..++++.|.-+|+.- -|.|..+.... +-|+|+|.+.+.|++.+.-..+.|++.+|.|.+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence 34799999999999999999999962 25788887643 468999999999999998657889999999976
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.38 E-value=0.012 Score=49.07 Aligned_cols=72 Identities=13% Similarity=0.076 Sum_probs=60.2
Q ss_pred CcEEEEcCCCCCC-c----HHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeec
Q 013446 256 RRTVYVSDIDQQV-T----EEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVL 329 (443)
Q Consensus 256 ~~tLfVgNLp~~t-T----eeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~ 329 (443)
..+|+|.||+.++ + .+.++++|..|+++......+.- +-..|.|.+. ++|.+|.. |++..+.|+.++|.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF----RRirv~F~~~-~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF----KRVRINFSNP-LSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT----TEEEEECSST-THHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc----eEEEEEeCCh-HHHHHHHHHhccceecCceeEEE
Confidence 4899999998764 2 36778999999998887776443 3678999999 89888887 99999999999999
Q ss_pred CCC
Q 013446 330 PSK 332 (443)
Q Consensus 330 ~S~ 332 (443)
++.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 986
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.22 E-value=0.019 Score=46.80 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=57.2
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC----CCCceEEEEEeCCHHHHHHHHh-hCCceeCCe-----ee
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY----HHSTRIAFVEFVMAESAIAALN-CSGVVLGSL-----PI 424 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~----~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr-----~L 424 (443)
++|.|++||+.+|++++.+.+++ ...+......... ...-.-|+|.|.+.+++..-.+ ++|..+.+. +-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~-~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQP-MPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCS-CCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcC-cccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 58999999999999999999998 6777776654322 2344579999999999999888 999765442 44
Q ss_pred EEeec
Q 013446 425 RVSPS 429 (443)
Q Consensus 425 ~V~~A 429 (443)
.|++|
T Consensus 81 ~VE~A 85 (91)
T 1uw4_A 81 IVEFA 85 (91)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 56665
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.90 E-value=0.052 Score=46.35 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=58.7
Q ss_pred cceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHhhCCceeCC-eeeEEeec
Q 013446 353 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGS-LPIRVSPS 429 (443)
Q Consensus 353 ~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~lnG~~l~G-r~L~V~~A 429 (443)
..+-|.|-+.|... ...|...|++ ||.|.....+ ...++-.|.|.++.+|++||..||..++| ..|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~-~G~Iv~~~~~----~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQ-YGNILKHVMS----NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHT-TSCEEEEEEC----SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHh-hCcEEEeccC----CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 45788899999885 6667888888 9999988762 23569999999999999999999999985 77878774
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.78 E-value=0.029 Score=47.88 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=58.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcccccCC-cceeecCC
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAGTMLGF-YPVRVLPS 331 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng~~l~G-r~I~V~~S 331 (443)
..+-|.|-+.|... ...+...|++||.|.+...... ..+-.|.|.++ .+|++||..||..++| ..|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~----~NWihI~Y~s~-~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT----GNWMHIRYQSK-LQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS----SSEEEEEESSH-HHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC----CCeEEEEeCCH-HHHHHHHHhCCeEecCCEEEEEEEC
Confidence 45889999999885 6778889999999998876222 35999999999 9999999999999985 55666664
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.30 E-value=0.076 Score=43.15 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=53.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC----CCceEEEEEEcChHHHHHHHHH-hcccccC
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN----SVLRFAFIEFTDEAEGARAALN-LAGTMLG 322 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~----~skG~aFVeF~t~~e~A~~Al~-lng~~l~ 322 (443)
+.|-|++||+.+||+++.+.++.+..+.....+..+. ..-.-|+|.|.+. +++....+ ++|..+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~-e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQ-EDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSS-HHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCH-HHHHHHHHHhCCcEEE
Confidence 5788999999999999999999988777666665432 2356799999999 99888887 8988763
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.66 E-value=0.073 Score=43.87 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=45.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH
Q 013446 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN 315 (443)
Q Consensus 255 ~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~ 315 (443)
..+.++| ++|......||.++|++||.| .|+.+.|. -|||.|.++ +.|..|+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-----sAlvvf~~~-~~a~~al~ 67 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-----SAFVSLSQP-EQVQIAVN 67 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-----EEEEECSCH-HHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-----eEEEEecCH-HHHHHHHH
Confidence 4477778 999999999999999999854 45566554 799999999 99999988
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.64 E-value=0.058 Score=44.44 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=43.3
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 413 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~ 413 (443)
...++| +.|+++...||.++|++ ||.| .|+++.|. -|||.|.+++.|..|++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~-fggv-~I~WidDT-----sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSA-FGNI-QISWIDDT-----SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTT-TCSC-CCEEEETT-----EEEEECSCHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhc-cCCE-EEEEEcCC-----eEEEEecCHHHHHHHHH
Confidence 355666 89999999999999999 8843 45665654 79999999999999998
No 393
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.74 E-value=0.017 Score=60.14 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=48.3
Q ss_pred ccccCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhcc
Q 013446 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLAG 318 (443)
Q Consensus 250 ~~~~~~~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~lng 318 (443)
.+.....++|||. .+..+++.+|.++|++||+|.++.+..+++ -|+.|+|.+. +++..++...+
T Consensus 47 ~r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~-~~~~~~~~~~~ 110 (464)
T 3pq1_A 47 ERREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQK-ESIGSLQNGTH 110 (464)
T ss_dssp HHHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC----CCHHHHSSCC
T ss_pred HHHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCH-HHHHHHHhccC
Confidence 4455567999997 799999999999999999999998886654 6999999999 99988776433
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.55 E-value=0.089 Score=43.45 Aligned_cols=53 Identities=21% Similarity=0.321 Sum_probs=43.8
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hC
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS 415 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-ln 415 (443)
..++| +.|+++...||.++|++ || =..|+++.|. -|||.|.+++.|..|++ ++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~-fg-gv~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSA-FG-NIQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTT-SE-EEEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhc-cC-CEEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 34556 89999999999999999 98 4456666664 79999999999999998 53
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.30 E-value=0.13 Score=42.45 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=43.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN 315 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~ 315 (443)
+.++| ++|......||.++|++||. ..|+.+.|. -|||.|.++ +.|..|+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-----sAlvvf~~~-~~a~~al~ 57 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-----SAFVSLSQP-EQVKIAVN 57 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-----EEEEEEEEE-CHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-----eEEEEecCH-HHHHHHHH
Confidence 55666 99999999999999999994 356666554 799999999 99999998
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.14 E-value=0.13 Score=42.26 Aligned_cols=75 Identities=11% Similarity=0.177 Sum_probs=53.1
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEec-cC---CCCceEEEEEeCCHHHHHHHHh-hCCceeCCe-----e
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG-DY---HHSTRIAFVEFVMAESAIAALN-CSGVVLGSL-----P 423 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~-d~---~~srGfAFVeF~t~e~A~~Al~-lnG~~l~Gr-----~ 423 (443)
+-+|.|+.||+.+|++++.+.+++. -.+....... +. ...-.-|+|.|.+.++...-.+ ++|..+-+. +
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~-~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPL-PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCC-SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCc-CccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 4689999999999999999998874 3444333222 21 1222468999999999999888 998765432 4
Q ss_pred eEEeec
Q 013446 424 IRVSPS 429 (443)
Q Consensus 424 L~V~~A 429 (443)
-.|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 556665
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.28 E-value=0.15 Score=44.18 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=53.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEE-EEec--------------CCC-CCceEEEEEEcChHHHHHHHHHhcccc
Q 013446 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDC-RICG--------------DPN-SVLRFAFIEFTDEAEGARAALNLAGTM 320 (443)
Q Consensus 257 ~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v-~i~~--------------dk~-~skG~aFVeF~t~~e~A~~Al~lng~~ 320 (443)
.-|.|-+.|.+. ...+.+.|++||.|.+- ...+ -+. +...+-.|.|.++ .+|.+||..||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~-~~A~rAL~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNP-ASAVDALLENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSH-HHHHHHHTTTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCH-HHHHHHHHhCCeE
Confidence 567777886554 45677889999998762 1110 010 1246789999999 9999999999999
Q ss_pred cCCcceeecCC
Q 013446 321 LGFYPVRVLPS 331 (443)
Q Consensus 321 l~Gr~I~V~~S 331 (443)
+.|.-|-|.+.
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99987777765
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.24 E-value=0.16 Score=43.98 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=54.2
Q ss_pred eeeeeeCCCCCCCHHHHHHHhhhcCCceEE-EEEec-------------c-CC-CCceEEEEEeCCHHHHHHHHhhCCce
Q 013446 355 RTIYCTNIDKKVTQADVKLFFESVCGEVYR-LRLLG-------------D-YH-HSTRIAFVEFVMAESAIAALNCSGVV 418 (443)
Q Consensus 355 ~tIfV~NLp~~~TeedL~elF~~~fG~V~~-vrI~~-------------d-~~-~srGfAFVeF~t~e~A~~Al~lnG~~ 418 (443)
.-|.|-+.|...+ ..|.+.|++ ||.|.. +...+ . +. ...++-.|+|.++.+|.+||..||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~-~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQE-FGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGG-GSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHh-hceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 5677778866554 456778888 898765 21111 0 00 13568899999999999999999999
Q ss_pred eCCeeeEEeecC
Q 013446 419 LGSLPIRVSPSK 430 (443)
Q Consensus 419 l~Gr~L~V~~Ak 430 (443)
++|..|-|.+.+
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988887764
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.34 E-value=0.082 Score=55.07 Aligned_cols=64 Identities=20% Similarity=0.250 Sum_probs=47.5
Q ss_pred ccccceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHhhCCce
Q 013446 350 REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVV 418 (443)
Q Consensus 350 ~~~~~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~lnG~~ 418 (443)
+.+..+.|+|. .|...++.+|.+.|++ ||.|.++...++.| -||.|+|.+.+++..++...+..
T Consensus 49 ~~qa~rsv~v~-~~~~~~~~~l~~y~~~-~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~~~~p 112 (464)
T 3pq1_A 49 REQAQRTVLIH-CPEKISENKFLKYLSQ-FGPINNHFFYESFG---LYAVVEFCQKESIGSLQNGTHTP 112 (464)
T ss_dssp HHHHHTEEEEE-ECCC---CHHHHHHGG-GSCCCCEEEECSSS---EEEEEECC---CCHHHHSSCCCC
T ss_pred HHHhcceEEEE-cCCCCCHHHHHHHHHh-cCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhccCCC
Confidence 34566899998 7999999999999999 99999998876553 59999999999999887643333
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=88.42 E-value=0.37 Score=39.57 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=47.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCC----CCceEEEEEEcChHHHHHHHHH-hccccc
Q 013446 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN----SVLRFAFIEFTDEAEGARAALN-LAGTML 321 (443)
Q Consensus 256 ~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~----~skG~aFVeF~t~~e~A~~Al~-lng~~l 321 (443)
+-.|-|+.||+.+||+++.+.++.+-.+.....+..+. ..-.-|+|.|.+. +++....+ .+|..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~-edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNP-DDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCH-HHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCH-HHHHHHHHHcCCcEE
Confidence 46789999999999999998887765543333332221 1245799999999 88888777 888776
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=63.73 E-value=15 Score=38.39 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=43.3
Q ss_pred ceeeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHh-hC
Q 013446 354 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS 415 (443)
Q Consensus 354 ~~tIfV~NLp~~~TeedL~elF~~~fG~V~~vrI~~d~~~srGfAFVeF~t~e~A~~Al~-ln 415 (443)
...++++ +|..+...+|.++|+. ||.+ +|+++.| ..|||.|.+.+.|..++. ++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~-fg~v-~V~widd-----t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSA-FGNI-QISWIDD-----TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGG-GCCC-EEEECSS-----SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHh-cCCE-EEEEEcC-----CeEEEEECCHHHHHHHHHHHH
Confidence 3566666 9999999999999998 8954 5555444 379999999999999998 64
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=61.02 E-value=16 Score=38.11 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=44.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hc
Q 013446 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LA 317 (443)
Q Consensus 256 ~~tLfVgNLp~~tTeeeL~e~F~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-ln 317 (443)
...++|+ +|..+...+|.++|+.||.+ +|+.+.|. .|||.|.+. +.|..++. +.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-----~a~V~~~~~-~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-----SAFVSLSQP-EQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-----EEEEECSCH-HHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-----eEEEEECCH-HHHHHHHHHHH
Confidence 4678887 88899999999999999954 56555443 799999999 99999887 53
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=24.41 E-value=1.8e+02 Score=21.34 Aligned_cols=66 Identities=9% Similarity=0.147 Sum_probs=39.5
Q ss_pred EEEEcCC-CCCCcHHHHHHHhhcCC-----CeeEEEEecCCCCCceEEEEEEcChHHHHHHHHH-hcccccCCcceeecC
Q 013446 258 TVYVSDI-DQQVTEEQLAALFVGCG-----QVVDCRICGDPNSVLRFAFIEFTDEAEGARAALN-LAGTMLGFYPVRVLP 330 (443)
Q Consensus 258 tLfVgNL-p~~tTeeeL~e~F~~~G-----~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~-lng~~l~Gr~I~V~~ 330 (443)
++||..= ...++..+|..++..-+ .|-.+.+.. .|.||+-... .+..++. |++..+.|+++.|..
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d------~~s~v~v~~~--~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD------NASYVEILNG--KGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS------SCEEEEECTT--CHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC------CcEEEEECHH--HHHHHHHHhccccCcCceEEEEE
Confidence 4566322 23366777777776543 344566642 3899998877 5666776 999999999998876
Q ss_pred C
Q 013446 331 S 331 (443)
Q Consensus 331 S 331 (443)
+
T Consensus 74 ~ 74 (76)
T 2g0c_A 74 A 74 (76)
T ss_dssp C
T ss_pred C
Confidence 5
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=21.63 E-value=2.2e+02 Score=25.30 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=41.8
Q ss_pred EEEEcCCCC-C--------CcHHHHHHHh--hcCCCeeEEEEecCCCCCceEEEEEEcChHHHHHHHHHhc
Q 013446 258 TVYVSDIDQ-Q--------VTEEQLAALF--VGCGQVVDCRICGDPNSVLRFAFIEFTDEAEGARAALNLA 317 (443)
Q Consensus 258 tLfVgNLp~-~--------tTeeeL~e~F--~~~G~I~~v~i~~dk~~skG~aFVeF~t~~e~A~~Al~ln 317 (443)
++.|-|+|. . ....+|.+.| +.|.++. ++...++....|++.|.|......-..|+.+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~fe 83 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNGLHNGLLFD 83 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHHHHHHHHHH
Confidence 456667775 1 3457899977 8888765 55555666678999999999856666677653
Done!