Citrus Sinensis ID: 013448

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---
Protein Sequence
MKGFREKAGASKCFSKSTPDTPNRSLASVGSELGSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL
Secondary Structure (PSIPRED)
ccccEEEccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccEEEcccEEccccccccccccccccHHHHHHHccEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccEEEccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHccccccEEEccccccEEEEEEEEcccEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEcccccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHccccccccccccccEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccccccccEEEEEEccccEEccccccEEccccccccccccccccccccEEEEEEEEEccHHcccHHHHHHHHHHHccccEEEEEccccccEEEEEEEEccEEEEEccccccccEcccccccccccccccccccccccHHcccccEEEEEEEccHHHHHHHHHHHHHHHcccccccEEEEEccccccccccHHccccccccccccccHHHcccccccccHcccEEc
Coil and Loop (DISEMBL)
mkgfrekagaskcfskstpdtpnrslasvgselgssETVKRLVTAGSMRrihervlgpsrtgissstsdIWLLGVCHKIaqdealgdaagnnglaefnqdFSSRILISYrkgfdpigdskitsdvgwgcmlRSSQMLVAQALLFHrlgrpwrkplqkpfdREYVEILHlfgdsetspfsIHNLLQAGKAyglaagswvgpyaMCRSWEALARCQraetglgcqslpMAIYVVsgdedgerggapvvciddasrhcsvfskgqadwtpiLLLVPLVlglekvnpryiptlrltftfpqslgivggkpgastYIVGVQeesaiyldphdvqpvinigkddleadtstyhsDVIRHIhldsidpslaigfycrdkddfDDFCARASKLaeesngaplftvtqthkkpvnhsdvlgetggvpeddslgvmsmndavgnaheddwqll
Flexible Loop (DISEMBL)
mkgfrekagaskcfskstpdtpnrslasvgselgssetVKRLvtagsmrrihervlgpsrtgisssTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAEtglgcqslPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLaeesngaplftvtqthkkpvnhsdvlgetggvpedDSLGVMSMNDAvgnaheddwqll
Low Complexity Region (SEG)
MKGFREKAGASKCFSKSTPDTPNRSLASVGSELGSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQdealgdaagnnglaeFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPIlllvplvlglEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL
Disordered region (IsUnstruct)
******************************************************************TSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARAS************************************************************
Disordered Region (DISOPRED)
*******************************************TAGSMRRIHERVLGPSR***SSSTSDIWLLGVCHKIAQ***********GLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPF*REYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDA*************WTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASK****SNGAPLFTVTQT*********************************NAH*DDWQLL
Disordered Region (DISEMBL)
*************************LASVGSELGSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL
Disordered Region (DISPRO)
********************************LGSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQD*******GNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKK**NHS**************LGVMSMN*****A**D***LL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKGFREKAGASKCFSKSTPDTPNRSLASVGSELGSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	443	2.2.26 [Sep-21-2011]
A2Q1V6	487	Cysteine protease ATG4 OS	N/A	no	0.918	0.835	0.684	1e-157
Q8S929	467	Cysteine protease ATG4a O	yes	no	0.844	0.800	0.647	1e-147
Q9M1Y0	477	Cysteine protease ATG4b O	no	no	0.882	0.819	0.615	1e-140
Q7XPW8	478	Cysteine protease ATG4B O	yes	no	0.943	0.874	0.588	1e-138
Q2XPP4	478	Cysteine protease ATG4B O	N/A	no	0.943	0.874	0.583	1e-137
A2XHJ5	473	Cysteine protease ATG4A O	N/A	no	0.943	0.883	0.569	1e-132
Q75KP8	474	Cysteine protease ATG4A O	no	no	0.941	0.879	0.579	1e-131
Q8BGE6	393	Cysteine protease ATG4B O	yes	no	0.735	0.829	0.327	1e-52
Q6DG88	394	Cysteine protease ATG4B O	yes	no	0.722	0.812	0.352	3e-52
Q9Y4P1	393	Cysteine protease ATG4B O	yes	no	0.735	0.829	0.333	1e-51

>sp|A2Q1V6|ATG4_MEDTR Cysteine protease ATG4 OS=Medicago truncatula GN=ATG4 PE=3 SV=1

 Score =  556 bits (1432), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 282/412 (68%), Positives = 324/412 (78%), Gaps = 5/412 (1%)

Query: 34  GSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNG 93
           G +  V+++V+ GSMRR  ERVLG  RT +SSS  DIWLLGVCHKI+Q E+ GD    N 
Sbjct: 79  GWAAAVRKVVSGGSMRRFQERVLGSCRTDVSSSDGDIWLLGVCHKISQHESTGDVDIRNV 138

Query: 94  LAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRK 153
            A F QDF SRILI+YRKGFD I DSK TSDV WGCMLRSSQMLVAQALLFH+LGR WRK
Sbjct: 139 FAAFEQDFFSRILITYRKGFDAIEDSKYTSDVNWGCMLRSSQMLVAQALLFHKLGRSWRK 198

Query: 154 PLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARC 213
            + KP D+EY++IL LFGDSE + FSIHNLLQAGK YGLA GSWVGPYAMCR+WE LAR 
Sbjct: 199 TVDKPVDKEYIDILQLFGDSEAAAFSIHNLLQAGKGYGLAVGSWVGPYAMCRTWEVLARN 258

Query: 214 QRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 273
           QR +   G Q LPMAIYVVSGDEDGERGGAPVVCI+DA + C  FS+G   WTP+LLLVP
Sbjct: 259 QREKNEQGEQLLPMAIYVVSGDEDGERGGAPVVCIEDACKRCLEFSRGLVPWTPLLLLVP 318

Query: 274 LVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVIN 333
           LVLGL+KVN RYIP L+ TF FPQSLGI+GGKPGASTYI+GVQ + A YLDPH+V+PV+N
Sbjct: 319 LVLGLDKVNLRYIPLLQSTFKFPQSLGILGGKPGASTYIIGVQNDKAFYLDPHEVKPVVN 378

Query: 334 IGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAP 393
           I  D  E +TS+YH ++ RH+ LDSIDPSLAIGFYCRDKDDFDDFC+RA+KLAEESNGAP
Sbjct: 379 ITGDTQEPNTSSYHCNISRHMPLDSIDPSLAIGFYCRDKDDFDDFCSRATKLAEESNGAP 438

Query: 394 LFTVTQTHKKP--VNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL 443
           LFTV Q+   P  V  + V G+     EDDSL +  +NDA    +EDDWQ L
Sbjct: 439 LFTVAQSRSLPMQVTSNSVSGDDTRFEEDDSLSMNLVNDA---GNEDDWQFL 487

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of ATG8 that may be subsequently converted to a smaller form, with a revealed C-terminal glycine. The C-terminal glycine of ATG8 is conjugated to phosphatidylethanolamine by an amide bond. This conjugated form has the capacity for the binding to autophagosomes.
Medicago truncatula (taxid: 3880)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp|Q8S929|ATG4A_ARATH Cysteine protease ATG4a OS=Arabidopsis thaliana GN=ATG4A PE=2 SV=1

 Score =  520 bits (1340), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 244/377 (64%), Positives = 306/377 (81%), Gaps = 3/377 (0%)

Query: 34  GSSETVKRL-VTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNN 92
           G +  VKR+ + +G++RR  ERVLGP+RTG+ S+TSD+WLLGVC+KI+ DE  G+     
Sbjct: 74  GWTAFVKRVSMASGAIRRFQERVLGPNRTGLPSTTSDVWLLGVCYKISADENSGETDTGT 133

Query: 93  GLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWR 152
            LA    DFSS+IL++YRKGF+P  D+  TSDV WGCM+RSSQML AQALLFHRLGR W 
Sbjct: 134 VLAALQLDFSSKILMTYRKGFEPFRDTTYTSDVNWGCMIRSSQMLFAQALLFHRLGRAWT 193

Query: 153 KPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALAR 212
           K  + P ++EY+E L  FGDSE S FSIHNL+ AG +YGLAAGSWVGPYA+CR+WE+LA 
Sbjct: 194 KKSELP-EQEYLETLEPFGDSEPSAFSIHNLIIAGASYGLAAGSWVGPYAICRAWESLAC 252

Query: 213 CQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLV 272
            +R +T    Q+LPMA+++VSG EDGERGGAP++CI+DA++ C  FSKGQ++WTPI+LLV
Sbjct: 253 KKRKQTDSKNQTLPMAVHIVSGSEDGERGGAPILCIEDATKSCLEFSKGQSEWTPIILLV 312

Query: 273 PLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVI 332
           PLVLGL+ VNPRYIP+L  TFTFPQS+GI+GGKPGASTYIVGVQE+   YLDPH+VQ V+
Sbjct: 313 PLVLGLDSVNPRYIPSLVATFTFPQSVGILGGKPGASTYIVGVQEDKGFYLDPHEVQQVV 372

Query: 333 NIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGA 392
            + K+  + DTS+YH +V+R++ L+S+DPSLA+GFYCRDKDDFDDFC RA KLAEESNGA
Sbjct: 373 TVNKETPDVDTSSYHCNVLRYVPLESLDPSLALGFYCRDKDDFDDFCLRALKLAEESNGA 432

Query: 393 PLFTVTQTHKKPVNHSD 409
           PLFTVTQTH   +N S+
Sbjct: 433 PLFTVTQTHTA-INQSN 448

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of ATG8 that may be subsequently converted to a smaller form, with a revealed C-terminal glycine. ATG8 is then activated by ATG7 and is subsequently attached to ATG3, another E2-like enzyme, after which the C-terminal glycine of ATG8 is conjugated to phosphatidylethanolamine by an amide bond. This conjugated form has the capacity for the binding to autophagosomes.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q9M1Y0|ATG4B_ARATH Cysteine protease ATG4b OS=Arabidopsis thaliana GN=ATG4B PE=1 SV=1

 Score =  498 bits (1282), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/401 (61%), Positives = 312/401 (77%), Gaps = 10/401 (2%)

Query: 43  VTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFS 102
           + +G++RR  +RVLGPSRTGISSSTS+IWLLGVC+KI++ E+  +A     LA F QDFS
Sbjct: 87  MASGAIRRFQDRVLGPSRTGISSSTSEIWLLGVCYKISEGESSEEADAGRVLAAFRQDFS 146

Query: 103 SRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDRE 162
           S IL++YR+GF+PIGD+  TSDV WGCMLRS QML AQALLF RLGR WRK   +P D +
Sbjct: 147 SLILMTYRRGFEPIGDTTYTSDVNWGCMLRSGQMLFAQALLFQRLGRSWRKKDSEPADEK 206

Query: 163 YVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGC 222
           Y+EIL LFGD+E S FSIHNL+ AG++YGLAAGSWVGPYA+CRSWE+LAR  + ET    
Sbjct: 207 YLEILELFGDTEASAFSIHNLILAGESYGLAAGSWVGPYAVCRSWESLARKNKEETDDKH 266

Query: 223 QSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVN 282
           +S  MA+++VSG EDGERGGAP++CI+D ++ C  FS+G+ +W PILLLVPLVLGL++VN
Sbjct: 267 KSFSMAVHIVSGSEDGERGGAPILCIEDVTKTCLEFSEGETEWPPILLLVPLVLGLDRVN 326

Query: 283 PRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEAD 342
           PRYIP+L  TFTFPQSLGI+GGKPGASTYIVGVQE+   YLDPHDVQ V+ + K++ + D
Sbjct: 327 PRYIPSLIATFTFPQSLGILGGKPGASTYIVGVQEDKGFYLDPHDVQQVVTVKKENQDVD 386

Query: 343 TSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHK 402
           TS+YH + +R++ L+S+DPSLA+GFYC+ KDDFDDFC RA+KLA +SNGAPLFTVTQ+H+
Sbjct: 387 TSSYHCNTLRYVPLESLDPSLALGFYCQHKDDFDDFCIRATKLAGDSNGAPLFTVTQSHR 446

Query: 403 KPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL 443
           +  N   +   +        +         G  HEDDWQLL
Sbjct: 447 R--NDCGIAETSSSTETSTEIS--------GEEHEDDWQLL 477

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of ATG8 that may be subsequently converted to a smaller form, with a revealed C-terminal glycine. ATG8 is then activated by ATG7 and is subsequently attached to ATG3, another E2-like enzyme, after which the C-terminal glycine of ATG8 is conjugated to phosphatidylethanolamine by an amide bond. This conjugated form has the capacity for the binding to autophagosomes.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q7XPW8|ATG4B_ORYSJ Cysteine protease ATG4B OS=Oryza sativa subsp. japonica GN=ATG4B PE=2 SV=1

 Score =  492 bits (1266), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 256/435 (58%), Positives = 324/435 (74%), Gaps = 17/435 (3%)

Query: 14  FSKSTPDTPNRSLASVGSELGSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLL 73
           F      + N+S  S       S  ++R+V +GSM R     LG S+   SS   D+W L
Sbjct: 56  FEAHQDSSANKSPKSSSGSYDWSRVLRRIVCSGSMWRF----LGTSKVLTSS---DVWFL 108

Query: 74  GVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRS 133
           G C+K++ +E+  D+   +G A F +DFSSRI I+YR+GFD I DSK TSDV WGCM+RS
Sbjct: 109 GKCYKLSSEESSSDSDSESGHATFLEDFSSRIWITYRRGFDAISDSKYTSDVNWGCMVRS 168

Query: 134 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLA 193
           SQMLVAQAL+FH LGR WR+PL+KP++ EY+ ILH+FGDSE   FSIHNLLQAG +YGLA
Sbjct: 169 SQMLVAQALIFHHLGRSWRRPLEKPYNPEYIGILHMFGDSEACAFSIHNLLQAGNSYGLA 228

Query: 194 AGSWVGPYAMCRSWEALARCQRAETGL--GCQSLPMAIYVVSGDEDGERGGAPVVCIDDA 251
           AGSWVGPYAMCR+W+ L R  R +  +  G +S PMA+YVVSGDEDGERGGAPVVCID A
Sbjct: 229 AGSWVGPYAMCRAWQTLVRTNREQHEVVDGNESFPMALYVVSGDEDGERGGAPVVCIDVA 288

Query: 252 SRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTY 311
           ++ C  F+KGQ+ W+PILLLVPLVLGL+K+NPRYIP L+ TFTFPQSLGI+GGKPG STY
Sbjct: 289 AQLCCDFNKGQSTWSPILLLVPLVLGLDKINPRYIPLLKETFTFPQSLGILGGKPGTSTY 348

Query: 312 IVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRD 371
           I GVQ++ A+YLDPH+VQ  ++I  D++EADTS+YH   +R + LD IDPSLAIGFYCRD
Sbjct: 349 IAGVQDDRALYLDPHEVQMAVDIAADNIEADTSSYHCSTVRDLALDLIDPSLAIGFYCRD 408

Query: 372 KDDFDDFCARASKLAEESNGAPLFTVTQT---HKKPVNHSDVLGETGGVPEDDSLGVMSM 428
           KDDFDDFC+RA++L +++NGAPLFTV Q+    K+  N  DVLG +G    D ++ V  +
Sbjct: 409 KDDFDDFCSRATELVDKANGAPLFTVVQSVQPSKQMYNQDDVLGISG----DGNINVEDL 464

Query: 429 NDAVGNAHEDDWQLL 443
            DA G   E++WQ+L
Sbjct: 465 -DASGETGEEEWQIL 478

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of ATG8 that may be subsequently converted to a smaller form, with a revealed C-terminal glycine. The C-terminal glycine of ATG8 is conjugated to phosphatidylethanolamine by an amide bond. This conjugated form has the capacity for the binding to autophagosomes.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q2XPP4|ATG4B_ORYSI Cysteine protease ATG4B OS=Oryza sativa subsp. indica GN=ATG4B PE=1 SV=2

 Score =  487 bits (1253), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 254/435 (58%), Positives = 322/435 (74%), Gaps = 17/435 (3%)

Query: 14  FSKSTPDTPNRSLASVGSELGSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLL 73
           F      + N+S  S          ++R+V +GSM R     LG S+   SS   D+W L
Sbjct: 56  FEAHQDSSANKSPKSSSGSYDWLRVLRRIVCSGSMWRF----LGTSKVLTSS---DVWFL 108

Query: 74  GVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRS 133
           G C+K++ +E+  D+   +G A F +DFSSRI I+YR+GFD I DSK TSDV WGCM+RS
Sbjct: 109 GKCYKLSSEESSSDSDSESGHATFLEDFSSRIWITYRRGFDAISDSKYTSDVNWGCMVRS 168

Query: 134 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLA 193
           SQMLVAQAL+FH LGR WR+P +KP++ EY+ ILH+FGDSE   FSIHNLLQAG +YGLA
Sbjct: 169 SQMLVAQALIFHHLGRSWRRPSEKPYNPEYIGILHMFGDSEACAFSIHNLLQAGNSYGLA 228

Query: 194 AGSWVGPYAMCRSWEALARCQRAETGL--GCQSLPMAIYVVSGDEDGERGGAPVVCIDDA 251
           AGSWVGPYAMCR+W+ L R  R +  +  G +S PMA+YVVSGDEDGERGGAPVVCID A
Sbjct: 229 AGSWVGPYAMCRAWQTLVRTNREQHEVVDGNESFPMALYVVSGDEDGERGGAPVVCIDVA 288

Query: 252 SRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTY 311
           ++ C  F+KGQ+ W+PILLLVPLVLGL+K+NPRYIP L+ TFTFPQSLGI+GGKPG STY
Sbjct: 289 AQLCCDFNKGQSTWSPILLLVPLVLGLDKINPRYIPLLKETFTFPQSLGILGGKPGTSTY 348

Query: 312 IVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRD 371
           I GVQ++ A+YLDPH+VQ  ++I  D++EADTS+YH   +R + LD IDPSLAIGFYCRD
Sbjct: 349 IAGVQDDRALYLDPHEVQMAVDIAADNIEADTSSYHCSTVRDLALDLIDPSLAIGFYCRD 408

Query: 372 KDDFDDFCARASKLAEESNGAPLFTVTQT---HKKPVNHSDVLGETGGVPEDDSLGVMSM 428
           KDDFDDFC+RA++L +++NGAPLFTV Q+    K+  N  DVLG +G    D ++ V  +
Sbjct: 409 KDDFDDFCSRATELVDKANGAPLFTVVQSVQPSKQMYNQDDVLGISG----DGNINVEDL 464

Query: 429 NDAVGNAHEDDWQLL 443
            DA G   E++WQ+L
Sbjct: 465 -DASGETGEEEWQIL 478

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of ATG8 that may be subsequently converted to a smaller form, with a revealed C-terminal glycine. The C-terminal glycine of ATG8 is conjugated to phosphatidylethanolamine by an amide bond. This conjugated form has the capacity for the binding to autophagosomes.

Oryza sativa subsp. indica (taxid: 39946)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|A2XHJ5|ATG4A_ORYSI Cysteine protease ATG4A OS=Oryza sativa subsp. indica GN=ATG4A PE=3 SV=1

 Score =  471 bits (1213), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/434 (56%), Positives = 312/434 (71%), Gaps = 16/434 (3%)

Query: 14  FSKSTPDTPNRSLASVGSELGSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLL 73
           F      + +R L         S  ++R+   GSM R     LG S+   + ++SD+W L
Sbjct: 52  FEAHQDSSAHRPLKPHSGSYAWSRFLRRIACTGSMWRF----LGASK---ALTSSDVWFL 104

Query: 74  GVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRS 133
           G C+K++ +E    +   +G A F +DFSSRI I+YRKGFD I DSK TSDV WGCM+RS
Sbjct: 105 GKCYKLSSEELSNSSDCESGNAAFLEDFSSRIWITYRKGFDAISDSKYTSDVNWGCMVRS 164

Query: 134 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLA 193
           SQMLVAQAL+FH LGR WRKP QKP+  EY+ ILH+FGDSE   FSIHNLLQAGK+YGLA
Sbjct: 165 SQMLVAQALIFHHLGRSWRKPSQKPYSPEYIGILHMFGDSEACAFSIHNLLQAGKSYGLA 224

Query: 194 AGSWVGPYAMCRSWEALARCQRA--ETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDA 251
           AGSWVGPYAMCR+W+ L R  R   E   G  + PMA+YVVSGDEDGERGGAPVVCID A
Sbjct: 225 AGSWVGPYAMCRAWQTLVRTNREHHEAVDGNGNFPMALYVVSGDEDGERGGAPVVCIDVA 284

Query: 252 SRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTY 311
           ++ C  F+KGQ+ W+PILLLVPLVLGL+K+NPRYIP L+ TFTFPQSLGI+GGKPG STY
Sbjct: 285 AQLCCDFNKGQSTWSPILLLVPLVLGLDKLNPRYIPLLKETFTFPQSLGILGGKPGTSTY 344

Query: 312 IVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRD 371
           + GVQ++  +YLDPH+VQ  ++I  D+LEADTS+YH   +R + LD IDPSLAIGFYCRD
Sbjct: 345 VAGVQDDRVLYLDPHEVQLAVDIAADNLEADTSSYHCSTVRDLALDLIDPSLAIGFYCRD 404

Query: 372 KDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDDSLGVMSMN-- 429
           KDDFDDFC+RAS+L +++NGAPLFTV Q+ +      +    +G     D + ++++   
Sbjct: 405 KDDFDDFCSRASELVDKANGAPLFTVMQSVQPSKQMYNEESSSG-----DGMDIINVEGL 459

Query: 430 DAVGNAHEDDWQLL 443
           D  G   E++WQ+L
Sbjct: 460 DGSGETGEEEWQIL 473

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of ATG8 that may be subsequently converted to a smaller form, with a revealed C-terminal glycine. The C-terminal glycine of ATG8 is conjugated to phosphatidylethanolamine by an amide bond. This conjugated form has the capacity for the binding to autophagosomes.

Oryza sativa subsp. indica (taxid: 39946)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q75KP8|ATG4A_ORYSJ Cysteine protease ATG4A OS=Oryza sativa subsp. japonica GN=ATG4A PE=3 SV=1

 Score =  469 bits (1206), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 252/435 (57%), Positives = 312/435 (71%), Gaps = 18/435 (4%)

Query: 14  FSKSTPDTPNRSLASVGSELGSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLL 73
           F      + NRSL         S  ++R+   GSM R     LG S+   + ++SD+W L
Sbjct: 53  FEAHQDSSANRSLKPHSGSYAWSRFLRRIACTGSMWRF----LGASK---ALTSSDVWFL 105

Query: 74  GVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRS 133
           G C+K++ +E    +   +G A F +DFSSRI I+YRKGFD I DSK TSDV WGCM+RS
Sbjct: 106 GKCYKLSSEELSNSSDCESGNAAFLEDFSSRIWITYRKGFDAISDSKYTSDVNWGCMVRS 165

Query: 134 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLA 193
           SQMLVAQAL+FH LGR WRKP QKP+  EY+ ILH+FGDSE   FSIHNLLQAGK+YGLA
Sbjct: 166 SQMLVAQALIFHHLGRSWRKPSQKPYSPEYIGILHMFGDSEACAFSIHNLLQAGKSYGLA 225

Query: 194 AGSWVGPYAMCRSWEALARCQRA--ETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDA 251
           AGSWVGPYAMCR+W+ L    R   E   G  + PMA+YVVSGDEDGERGGAPVVCID A
Sbjct: 226 AGSWVGPYAMCRAWQTLVCTNREHHEAVDGNGNFPMALYVVSGDEDGERGGAPVVCIDVA 285

Query: 252 SRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTY 311
           ++ C  F+K Q+ W+PILLLVPLVLGL+K+NPRYIP L+ T TFPQSLGI+GGKPG STY
Sbjct: 286 AQLCCDFNKNQSTWSPILLLVPLVLGLDKLNPRYIPLLKETLTFPQSLGILGGKPGTSTY 345

Query: 312 IVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRD 371
           I GVQ++ A+YLDPH+VQ  ++I  D+LEA TS+YH   +R + LD IDPSLAIGFYCRD
Sbjct: 346 IAGVQDDRALYLDPHEVQLAVDIAADNLEAGTSSYHCSTVRDLALDLIDPSLAIGFYCRD 405

Query: 372 KDDFDDFCARASKLAEESNGAPLFTVTQT---HKKPVNHSDVLGETGGVPEDDSLGVMSM 428
           KDDFDDFC+RAS+L +++NGAPLFTV Q+    K+  N     G+  G+   DS+ V  +
Sbjct: 406 KDDFDDFCSRASELVDKANGAPLFTVVQSVQPSKQMYNEESSSGD--GM---DSINVEGL 460

Query: 429 NDAVGNAHEDDWQLL 443
            D  G   E++WQ+L
Sbjct: 461 -DGSGETGEEEWQIL 474

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of ATG8 that may be subsequently converted to a smaller form, with a revealed C-terminal glycine. The C-terminal glycine of ATG8 is conjugated to phosphatidylethanolamine by an amide bond. This conjugated form has the capacity for the binding to autophagosomes.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q8BGE6|ATG4B_MOUSE Cysteine protease ATG4B OS=Mus musculus GN=Atg4b PE=1 SV=2

 Score =  207 bits (527), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 184/366 (50%), Gaps = 40/366 (10%)

Query: 66  STSDIWLLGVCHKI--AQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITS 123
           ++  +W+LG  + I   +DE L D A             SR+  +YR+ F  IG +  TS
Sbjct: 22  TSEPVWILGRKYSIFTEKDEILSDVA-------------SRLWFTYRRNFPAIGGTGPTS 68

Query: 124 DVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNL 183
           D GWGCMLR  QM+ AQAL+   LGR WR   +K     Y  +L+ F D + S +SIH +
Sbjct: 69  DTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFNVLNAFLDRKDSYYSIHQI 128

Query: 184 LQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYV-----VSGDEDG 238
            Q G   G + G W GP  + +  + LA      +        +A+++     V  +E  
Sbjct: 129 AQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSS--------LAVHIAMDNTVVMEEIR 180

Query: 239 ERGGAPVVCI------DDASRHCSVFSKGQ------ADWTPILLLVPLVLGLEKVNPRYI 286
               A + C        D+ RHC+ F  G       + W P++LL+PL LGL  +N  Y+
Sbjct: 181 RLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDINEAYV 240

Query: 287 PTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTY 346
            TL+  F  PQSLG++GGKP ++ Y +G   E  IYLDPH  QP + +       D S +
Sbjct: 241 ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPDESFH 300

Query: 347 HSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVN 406
                  + +  +DPS+A+GF+C+ ++DF+D+C +  KL++     P+F + +     + 
Sbjct: 301 CQHPPSRMGIGELDPSIAVGFFCKTEEDFNDWCQQVKKLSQLGGALPMFELVEQQPSHLA 360

Query: 407 HSDVLG 412
             DVL 
Sbjct: 361 CQDVLN 366

Cysteine protease required for autophagy, which cleaves the C-terminal part of either MAP1LC3, GABARAPL2 or GABARAP, allowing the liberation of form I. A subpopulation of form I is subsequently converted to a smaller form (form II). Form II, with a revealed C-terminal glycine, is considered to be the phosphatidylethanolamine (PE)-conjugated form, and has the capacity for the binding to autophagosomes.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q6DG88|ATG4B_DANRE Cysteine protease ATG4B OS=Danio rerio GN=atg4b PE=2 SV=2

 Score =  206 bits (524), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 176/338 (52%), Gaps = 18/338 (5%)

Query: 100 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPF 159
           D +SR+  +YRK F PIG +  TSD GWGCMLR  QM++ +AL+   LGR W+    +  
Sbjct: 45  DVTSRLWFTYRKNFQPIGGTGPTSDTGWGCMLRCGQMILGEALICRHLGRDWKWSPGQRQ 104

Query: 160 DREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP---------YAMCRSWEAL 210
             EYV IL+ F D + S +SIH + Q G   G + G W GP          A+  SW  L
Sbjct: 105 RPEYVSILNAFIDKKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDSWSRL 164

Query: 211 ARCQRAETGLGCQSLPMAIYVVSGDEDGERGGA-----PVVCIDDASRHCSVFSKGQADW 265
           A     +  +  + +     +     D +RG       P     D    C++  +  A W
Sbjct: 165 AVHVAMDNTVVIEEIKR---LCMPWLDFDRGACAVSEEPREMNGDLEGACALAEEETALW 221

Query: 266 TPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDP 325
            P++LL+PL LGL  +N  YI  L+  F  PQSLG++GGKP ++ Y +G   +  IYLDP
Sbjct: 222 KPLVLLIPLRLGLSDINEAYIEPLKQCFMMPQSLGVIGGKPNSAHYFIGFVGDELIYLDP 281

Query: 326 HDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKL 385
           H  QP ++  +D    D S +       +H+  +DPS+A GF+C+ +DDFDD+CA+  K+
Sbjct: 282 HTTQPAVDPSEDGHFPDDSYHCQHPPCRMHICELDPSIAAGFFCQTEDDFDDWCAQIRKV 341

Query: 386 AEESNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDDSL 423
           +    G P+F +  +    +  +DVL  T    + D L
Sbjct: 342 S-NCRGLPMFELVDSQPSHLITADVLNLTPDFSDSDRL 378

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of proteins that may be subsequently converted to a smaller form, with a revealed C-terminal glycine, considered to be the phosphatidylethanolamine (PE)-conjugated form. This conjugated form has the capacity for the binding to autophagosomes.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q9Y4P1|ATG4B_HUMAN Cysteine protease ATG4B OS=Homo sapiens GN=ATG4B PE=1 SV=2

 Score =  204 bits (519), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 181/366 (49%), Gaps = 40/366 (10%)

Query: 66  STSDIWLLGVCHKI--AQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITS 123
           ++  +W+LG  + I   +DE L D A             SR+  +YRK F  IG +  TS
Sbjct: 22  TSEPVWILGRKYSIFTEKDEILSDVA-------------SRLWFTYRKNFPAIGGTGPTS 68

Query: 124 DVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNL 183
           D GWGCMLR  QM+ AQAL+   LGR WR   +K     Y  +L+ F D + S +SIH +
Sbjct: 69  DTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQI 128

Query: 184 LQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYV-----VSGDEDG 238
            Q G   G + G W GP  + +  + LA      +        +A+++     V  +E  
Sbjct: 129 AQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSS--------LAVHIAMDNTVVMEEIR 180

Query: 239 ERGGAPVVCID------DASRHCSVFSKGQ------ADWTPILLLVPLVLGLEKVNPRYI 286
                 V C        D+ RHC+ F  G       + W P++LL+PL LGL  +N  Y+
Sbjct: 181 RLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYV 240

Query: 287 PTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTY 346
            TL+  F  PQSLG++GGKP ++ Y +G   E  IYLDPH  QP +         D S +
Sbjct: 241 ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFH 300

Query: 347 HSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVN 406
                  + +  +DPS+A+GF+C+ +DDF+D+C +  KL+      P+F + +     + 
Sbjct: 301 CQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVELQPSHLA 360

Query: 407 HSDVLG 412
             DVL 
Sbjct: 361 CPDVLN 366

Cysteine protease required for autophagy, which cleaves the C-terminal part of either MAP1LC3, GABARAPL2 or GABARAP, allowing the liberation of form I. A subpopulation of form I is subsequently converted to a smaller form (form II). Form II, with a revealed C-terminal glycine, is considered to be the phosphatidylethanolamine (PE)-conjugated form, and has the capacity for the binding to autophagosomes.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	443
255576671	489	Cysteine protease ATG4B, putative [Ricin	0.995	0.901	0.676	1e-178
359495820	486	PREDICTED: cysteine protease ATG4-like [	0.968	0.882	0.711	1e-175
224117658	482	predicted protein [Populus trichocarpa]	0.986	0.906	0.661	1e-174
147862867	489	hypothetical protein VITISV_021940 [Viti	0.968	0.877	0.711	1e-174
224092798	481	predicted protein [Populus trichocarpa]	0.911	0.839	0.736	1e-173
449442361	483	PREDICTED: cysteine protease ATG4-like [	0.914	0.838	0.739	1e-168
356568569	485	PREDICTED: cysteine protease ATG4-like [	0.911	0.832	0.714	1e-159
356531828	486	PREDICTED: cysteine protease ATG4-like [	0.914	0.833	0.707	1e-158
357507987	487	Cysteine protease ATG4 [Medicago truncat	0.918	0.835	0.684	1e-155
388514549	489	unknown [Lotus japonicus]	0.995	0.901	0.588	1e-145

>gi|255576671|ref|XP_002529225.1| Cysteine protease ATG4B, putative [Ricinus communis] gi|223531343|gb|EEF33181.1| Cysteine protease ATG4B, putative [Ricinus communis]

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 332/491 (67%), Positives = 379/491 (77%), Gaps = 50/491 (10%)

Query: 1   MKGFREKAGASKCFSKSTPDTPNRSLASVGSELGS------------------------- 35
           MKGFRE+  AS+C SK   DTPNRSL S   E GS                         
Sbjct: 1   MKGFRERV-ASRCSSKCPVDTPNRSLTSDCLESGSNFSTKGSLWSSFFASAFSVFETYRE 59

Query: 36  -----------------SETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHK 78
                            +  VK++V+ GSMRRIHERVLGPSRTGISS+TSDIWLLGVC+K
Sbjct: 60  SPPASEKKGSHSRHNGWTSAVKKIVSGGSMRRIHERVLGPSRTGISSTTSDIWLLGVCYK 119

Query: 79  IAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLV 138
           I++DE+ G+A   N LAEF  D+SSRIL++YR+GFD IGDSK  SDVGWGCMLRSSQMLV
Sbjct: 120 ISEDES-GNADTGNALAEFTHDYSSRILMTYRRGFDAIGDSKYISDVGWGCMLRSSQMLV 178

Query: 139 AQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWV 198
           AQALLFH+LGR W KP QKP D+ YVEILHLFGDSE +PFSIHNL+QAGKAY LAAGSWV
Sbjct: 179 AQALLFHKLGRAWTKPFQKPMDQAYVEILHLFGDSEAAPFSIHNLIQAGKAYSLAAGSWV 238

Query: 199 GPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVF 258
           GPYAMCRSWE+LAR +R E  L  QSLPMA+YVVSGDEDGERGGAPVV I+DASRHC  F
Sbjct: 239 GPYAMCRSWESLARSKREENSLEYQSLPMAVYVVSGDEDGERGGAPVVYIEDASRHCLEF 298

Query: 259 SKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEE 318
           S+GQADWTPILLLVPLVLGL+KVNPRYIP+L+ TFTF QSLGI+GGKPGASTYIVGVQ++
Sbjct: 299 SRGQADWTPILLLVPLVLGLDKVNPRYIPSLQATFTFSQSLGIMGGKPGASTYIVGVQDD 358

Query: 319 SAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDF 378
           +A YLDPH+VQ V+NIG+DD+EADTS+YHSD++RHI L SIDPSLAIGFYCRDKDDFD+F
Sbjct: 359 NAFYLDPHEVQSVVNIGRDDIEADTSSYHSDIVRHIPLHSIDPSLAIGFYCRDKDDFDEF 418

Query: 379 CARASKLAEESNGAPLFTVTQTHK--KPVNHSDVL-GETGGVPEDDSLGV-MSMNDAV-- 432
           C  ASKLA++S GAPLFTV   HK  KPV+H D+L  E   V EDDS+ V M +ND    
Sbjct: 419 CLLASKLADDSQGAPLFTVAHCHKLPKPVSHGDMLNNEDDEVQEDDSVNVMMPVNDDAEG 478

Query: 433 GNAHEDDWQLL 443
           G A ED+WQLL
Sbjct: 479 GGAQEDEWQLL 489

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495820|ref|XP_003635099.1| PREDICTED: cysteine protease ATG4-like [Vitis vinifera] gi|296086874|emb|CBI33041.3| unnamed protein product [Vitis vinifera]

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 308/433 (71%), Positives = 357/433 (82%), Gaps = 4/433 (0%)

Query: 15  SKSTPDTPNRSLASVGSELGSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLG 74
           S+S+P    +     G   G +  V+++VT  SMRRI ERVLG S+TGISSSTSDIWLLG
Sbjct: 54  SESSPSASEKKAIDNGRNNGWTTAVRKVVTGVSMRRIQERVLGTSKTGISSSTSDIWLLG 113

Query: 75  VCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSS 134
           +C+KI+Q+E+   A+ +NGLAEF QDFSSRIL++YRKGF+ IGDSK+TSDV WGCMLRSS
Sbjct: 114 LCYKISQEESSNHASSSNGLAEFEQDFSSRILMTYRKGFEAIGDSKLTSDVNWGCMLRSS 173

Query: 135 QMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAA 194
           QMLVAQALL HR+GR WRK   KP D++Y+EILH FGDS+ S FSIHN+LQAGKAYGLAA
Sbjct: 174 QMLVAQALLLHRMGRSWRKTSHKPMDQDYIEILHHFGDSKASAFSIHNILQAGKAYGLAA 233

Query: 195 GSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRH 254
           GSWVGPYAMCRSWE LAR +R ET L CQSLPMAIY+VSGDEDGERGGAPVV I++ASRH
Sbjct: 234 GSWVGPYAMCRSWETLARSKREETDLECQSLPMAIYIVSGDEDGERGGAPVVYIEEASRH 293

Query: 255 CSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVG 314
           C  FSKGQ DWTPILLLVPLVLGLEKVNPRYIP+L  TFTFPQSLGI+GGKPGASTYIVG
Sbjct: 294 CLEFSKGQVDWTPILLLVPLVLGLEKVNPRYIPSLAATFTFPQSLGILGGKPGASTYIVG 353

Query: 315 VQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDD 374
           VQ+E A YLDPH+ Q V++I +++LEADTS+YH ++IRHI LDSIDPSLAIGFYCRDKDD
Sbjct: 354 VQDEKAFYLDPHEAQSVVDIRRENLEADTSSYHCNIIRHICLDSIDPSLAIGFYCRDKDD 413

Query: 375 FDDFCARASKLAEESNGAPLFTVTQTHK--KPVNHSDVLGETGGVPEDDSLGVMSMNDAV 432
           FDDFC RASKLA++SNGAPLFTV   H   KP++ SD + +  G  EDDS  V+S   A 
Sbjct: 414 FDDFCIRASKLADKSNGAPLFTVAHIHSLPKPISCSDGMDDCSGFREDDSFDVVSNKGAE 473

Query: 433 G--NAHEDDWQLL 443
           G  + HEDDWQLL
Sbjct: 474 GYEHEHEDDWQLL 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117658|ref|XP_002331599.1| predicted protein [Populus trichocarpa] gi|222873995|gb|EEF11126.1| predicted protein [Populus trichocarpa]

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 323/488 (66%), Positives = 373/488 (76%), Gaps = 51/488 (10%)

Query: 1   MKGFREKAGASKCFSKSTPDTPNRSLASVGSELGSSET---------------------- 38
           MKGFRE+   +   S ST ++PNRS  S  SELGS++T                      
Sbjct: 1   MKGFRERGFVASSKSSSTAESPNRSFTSDSSELGSADTKFSKPSLWSTFFASAFSVFDTH 60

Query: 39  -----------------------VKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGV 75
                                  VK++V  GSMRRI E VLG S+TGIS++T DIWLLG 
Sbjct: 61  CDSSSTSEKKAPHIRHGNGWTSAVKKIVAGGSMRRIQECVLGTSKTGISNTTGDIWLLGA 120

Query: 76  CHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQ 135
           C+KI+QD + GDAA  N LA FN DFSSRILI+YRKGFD I DSK+TSDV WGCMLRSSQ
Sbjct: 121 CYKISQDNSSGDAAATNALAAFNHDFSSRILITYRKGFDAIEDSKLTSDVSWGCMLRSSQ 180

Query: 136 MLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAG 195
           MLVAQALLFHRLGR WRKPL KP DREYVEILHLFGDSE+S FSIHNLL+AGKAYGLAAG
Sbjct: 181 MLVAQALLFHRLGRSWRKPLDKPLDREYVEILHLFGDSESSAFSIHNLLRAGKAYGLAAG 240

Query: 196 SWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHC 255
           SWVGPYA+C SWE+L R +R ET L  QSL MA+YVVSG EDGERGGAPV+CI++A+RHC
Sbjct: 241 SWVGPYAVCHSWESLVRSRREETNLEYQSLSMAVYVVSGSEDGERGGAPVLCIEEAARHC 300

Query: 256 SVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGV 315
           S FSKGQ DWTPILLLVPLVLGL+K+NPRYIP+L+ TFTFPQSLGI+GGKPGASTYIVGV
Sbjct: 301 SEFSKGQEDWTPILLLVPLVLGLDKINPRYIPSLQATFTFPQSLGILGGKPGASTYIVGV 360

Query: 316 QEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDF 375
           Q+E+A YLDPH+VQPV+N+ +DD+EA+TS+YH +V+RH+ LD IDPSLAIGFYCRDKDDF
Sbjct: 361 QDENAFYLDPHEVQPVVNVSRDDVEANTSSYHCNVVRHMPLDLIDPSLAIGFYCRDKDDF 420

Query: 376 DDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNA 435
           DDFC  ASKL +ESNGAPLFTV  + +K + H     ++G V  DDSLGVM+MND  G  
Sbjct: 421 DDFCTLASKLTDESNGAPLFTVAHS-RKLLKH-----DSGEVRSDDSLGVMTMNDVEGCV 474

Query: 436 HEDDWQLL 443
           HEDDWQLL
Sbjct: 475 HEDDWQLL 482

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862867|emb|CAN81102.1| hypothetical protein VITISV_021940 [Vitis vinifera]

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 310/436 (71%), Positives = 357/436 (81%), Gaps = 7/436 (1%)

Query: 15  SKSTPDTPNRSLASVGSELGSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLG 74
           S+S+P    +     G   G +  V+++VT  SMRRI ERVLG S+TGISSSTSDIWLLG
Sbjct: 54  SESSPSASEKKAIDNGRNNGWTTAVRKVVTGVSMRRIQERVLGTSKTGISSSTSDIWLLG 113

Query: 75  VCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSS 134
           +C+KI+Q+E+   A+ +NGLAEF QDFSSRIL++YRKGF+ IGDSK+TSDV WGCMLRSS
Sbjct: 114 LCYKISQEESSNHASSSNGLAEFEQDFSSRILMTYRKGFEAIGDSKLTSDVNWGCMLRSS 173

Query: 135 QMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAA 194
           QMLVAQALL HR+GR WRK   KP D++Y+EILH FGDS+ S FSIHN+LQAGKAYGLAA
Sbjct: 174 QMLVAQALLLHRMGRSWRKTSHKPMDQDYIEILHHFGDSKASAFSIHNILQAGKAYGLAA 233

Query: 195 GSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRH 254
           GSWVGPYAMCRSWE LAR +R ET L CQSLPMAIY+VSGDEDGERGGAPVV I++ASRH
Sbjct: 234 GSWVGPYAMCRSWETLARSKREETDLECQSLPMAIYIVSGDEDGERGGAPVVYIEEASRH 293

Query: 255 CSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVG 314
           C  FSKGQ DWTPILLLVPLVLGLEKVNPRYIP+L  TFTFPQSLGI+GGKPGASTYIVG
Sbjct: 294 CLEFSKGQVDWTPILLLVPLVLGLEKVNPRYIPSLAATFTFPQSLGILGGKPGASTYIVG 353

Query: 315 VQEESAIYLDPHDVQPVINIGKDDLEADTSTYH---SDVIRHIHLDSIDPSLAIGFYCRD 371
           VQ+E A YLDPH+ Q V++I +++LEADTS+YH   S +IRHI LDSIDPSLAIGFYCRD
Sbjct: 354 VQDEKAFYLDPHEAQSVVDIRRENLEADTSSYHCNCSSIIRHICLDSIDPSLAIGFYCRD 413

Query: 372 KDDFDDFCARASKLAEESNGAPLFTVTQTHK--KPVNHSDVLGETGGVPEDDSLGVMSMN 429
           KDDFDDFC RASKLA+ESNGAPLFTV   H   KP++ SD + +  G  EDDS  V+S  
Sbjct: 414 KDDFDDFCIRASKLADESNGAPLFTVAHIHSLPKPISCSDGMDDCSGFREDDSFDVVSNK 473

Query: 430 DAVG--NAHEDDWQLL 443
            A G  + HEDDWQLL
Sbjct: 474 GAEGYEHEHEDDWQLL 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092798|ref|XP_002309707.1| predicted protein [Populus trichocarpa] gi|222852610|gb|EEE90157.1| predicted protein [Populus trichocarpa]

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 302/410 (73%), Positives = 353/410 (86%), Gaps = 6/410 (1%)

Query: 34  GSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNG 93
           G + +VK++V  G+MRRI ERVLG S+TGIS++TSDIWLLG  +KI+QD++ G+A   N 
Sbjct: 78  GWTSSVKKIVAGGTMRRIQERVLGTSKTGISNTTSDIWLLGARYKISQDDSSGNADATNA 137

Query: 94  LAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRK 153
           LA F++DFSSRILI+YRKGFD I DSK+TSDV WGCMLRSSQMLVAQALLFHRLGR WRK
Sbjct: 138 LAAFHRDFSSRILITYRKGFDMIEDSKLTSDVNWGCMLRSSQMLVAQALLFHRLGRSWRK 197

Query: 154 PLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARC 213
           P+ KP DR+YVEILHLFGDSE S FSIHNLLQAGKAYGLAAGSWVGPYAMCRSWE+LAR 
Sbjct: 198 PVDKPLDRDYVEILHLFGDSEASAFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWESLARS 257

Query: 214 QRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 273
           +R ET L  Q+LPMA+YVVSG EDGERGGAPV+ I+DA+RHCS FSKG+ DWTPILLLVP
Sbjct: 258 KREETNLEYQTLPMAVYVVSGCEDGERGGAPVLSIEDAARHCSEFSKGREDWTPILLLVP 317

Query: 274 LVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVIN 333
           LVLGL+K+NPRYIP+L+ TFTFPQSLGI+GGKPGASTYIVGVQ+E+A YLDPH+VQPV+N
Sbjct: 318 LVLGLDKINPRYIPSLQATFTFPQSLGILGGKPGASTYIVGVQDENAFYLDPHEVQPVVN 377

Query: 334 IGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAP 393
             +DD+EA+TS+YH DV+RHI LD IDPSLAIGFYCRDKDDFDDFC+ ASKLA+ESNGAP
Sbjct: 378 FSRDDVEANTSSYHCDVVRHIPLDLIDPSLAIGFYCRDKDDFDDFCSLASKLADESNGAP 437

Query: 394 LFTVTQTHKKPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL 443
           LFTV  ++K   +      ++  V +DD LGVM+MNDA G  +EDDWQLL
Sbjct: 438 LFTVANSYKSSKH------DSSEVRDDDPLGVMTMNDAEGCLNEDDWQLL 481

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442361|ref|XP_004138950.1| PREDICTED: cysteine protease ATG4-like [Cucumis sativus] gi|449512710|ref|XP_004164121.1| PREDICTED: cysteine protease ATG4-like [Cucumis sativus]

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 301/407 (73%), Positives = 339/407 (83%), Gaps = 2/407 (0%)

Query: 38  TVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEF 97
           TV++++T+GSMRRI ER+LG  R+G+ SS  DIWLLGVCHKI+QD    DAA + G+A +
Sbjct: 78  TVRKVMTSGSMRRIQERLLGSRRSGVYSSGGDIWLLGVCHKISQDHPPDDAASSPGVAGY 137

Query: 98  NQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQK 157
            QDFSSRIL++YRKGF  I DSK TSDV WGCMLRSSQMLVAQALLFHRLGR WRKP QK
Sbjct: 138 EQDFSSRILMTYRKGFHVIQDSKYTSDVNWGCMLRSSQMLVAQALLFHRLGRSWRKPSQK 197

Query: 158 PFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAE 217
           P D+EYVEILHLFGDSETS FSIHNLLQAG+AY LAAGSWVGPYAMCRSWE L R +R  
Sbjct: 198 PLDKEYVEILHLFGDSETSAFSIHNLLQAGRAYDLAAGSWVGPYAMCRSWETLVRSKRET 257

Query: 218 TGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLG 277
             L  Q LPMAIY+VSGDEDGERGGAPV+ IDDASRHC  FSKGQ DW+PILLLVPLVLG
Sbjct: 258 PILQDQQLPMAIYIVSGDEDGERGGAPVLYIDDASRHCFEFSKGQHDWSPILLLVPLVLG 317

Query: 278 LEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKD 337
           LEK+NPRYIP+LR TFTFPQSLGI+GGKPGASTYIVGVQ+E+A YLDPH+VQ V+NI KD
Sbjct: 318 LEKINPRYIPSLRTTFTFPQSLGILGGKPGASTYIVGVQDENAFYLDPHEVQQVVNIDKD 377

Query: 338 DLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTV 397
           DLEADTS+YH +VIRHI L+SIDPSLAIGFYCRDKDDFD+FC RASKLAEES+GAPLFTV
Sbjct: 378 DLEADTSSYHCNVIRHIPLESIDPSLAIGFYCRDKDDFDNFCHRASKLAEESDGAPLFTV 437

Query: 398 TQTHK-KPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL 443
            +TH   P   S  L +   + EDD  GV+ M +    +HEDDWQ L
Sbjct: 438 AETHSTNPGRQSSALNDHSRLVEDDGDGVVHMPNE-EESHEDDWQFL 483

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568569|ref|XP_003552483.1| PREDICTED: cysteine protease ATG4-like [Glycine max]

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 295/413 (71%), Positives = 333/413 (80%), Gaps = 9/413 (2%)

Query: 34  GSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNG 93
           G +  V+++VT GSMRR  ERVLG SRT ISSS  DIWLLGVCHKI+Q E+ G    +NG
Sbjct: 79  GWAAAVRKVVTGGSMRRFQERVLGSSRTDISSSDGDIWLLGVCHKISQQESTGGVDTSNG 138

Query: 94  LAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRK 153
           LA F QDFSS+IL++YRKGFD IGD+K TSDV WGCMLRSSQMLVAQALLFH+LGR WRK
Sbjct: 139 LASFEQDFSSKILVTYRKGFDAIGDTKYTSDVNWGCMLRSSQMLVAQALLFHKLGRSWRK 198

Query: 154 PLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARC 213
           P+ KP D+EY+++L LFGDSE S FSIHNLLQAGK YGLA GSWVGPYAMCR+WE LA  
Sbjct: 199 PIDKPLDKEYIDVLQLFGDSEASAFSIHNLLQAGKGYGLAVGSWVGPYAMCRTWEVLA-- 256

Query: 214 QRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 273
            R +  LG   LPMAIYVVSGDEDGERGGAPVVCI+DAS+ CS FS G A WTP+LLLVP
Sbjct: 257 -RKKNDLGEPPLPMAIYVVSGDEDGERGGAPVVCIEDASKRCSEFSSGLAVWTPLLLLVP 315

Query: 274 LVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVIN 333
           LVLGL+KVNPRYIP LR TF FPQSLGI+GGKPGASTYI+GVQ E A YLDPHDVQ V+N
Sbjct: 316 LVLGLDKVNPRYIPLLRSTFKFPQSLGIMGGKPGASTYIIGVQNEKAFYLDPHDVQQVVN 375

Query: 334 IGKDDLE-ADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGA 392
           I  D  E   TS+YH +V+RHI LDSIDPSLAIGFYCRDKDDFDDFC++ASKLAEESNGA
Sbjct: 376 ISGDTQEPTGTSSYHCNVMRHIPLDSIDPSLAIGFYCRDKDDFDDFCSQASKLAEESNGA 435

Query: 393 PLFTV--TQTHKKPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL 443
           PLFTV  +++  K V++ DV G+  G  EDD  G+   ND V N  EDDWQLL
Sbjct: 436 PLFTVAKSRSFSKQVSN-DVSGDNTGFQEDDFPGMDCGNDTVTN--EDDWQLL 485

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531828|ref|XP_003534478.1| PREDICTED: cysteine protease ATG4-like [Glycine max]

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/413 (70%), Positives = 329/413 (79%), Gaps = 8/413 (1%)

Query: 34  GSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNG 93
           G +  V+++VT GSMRR  ERVLG SRT ISSS  DIWLLGVCHKI+Q E+ G    +NG
Sbjct: 79  GWAAAVRKVVTGGSMRRFQERVLGSSRTDISSSDGDIWLLGVCHKISQQESSGGVDNSNG 138

Query: 94  LAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRK 153
           LA F QDFSS+IL++YRKGFD IGD+K TSDV WGCMLRSSQMLVAQALLFH+LGR WRK
Sbjct: 139 LASFEQDFSSKILVTYRKGFDAIGDTKYTSDVHWGCMLRSSQMLVAQALLFHKLGRSWRK 198

Query: 154 PLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARC 213
           P+ KP D+EY+++L LFGDSE S FSIHNLLQAGK YGLA GSWVGPYAMCR+WE LA  
Sbjct: 199 PIDKPPDKEYIDVLQLFGDSEASAFSIHNLLQAGKGYGLAVGSWVGPYAMCRTWEVLA-- 256

Query: 214 QRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 273
            R +  LG   LPMAIYVVSGDEDGERGGAPVVCI+DAS+ C  FS G A WTP+LLLVP
Sbjct: 257 -RKKNDLGELPLPMAIYVVSGDEDGERGGAPVVCIEDASKRCFEFSSGLAAWTPLLLLVP 315

Query: 274 LVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVIN 333
           LVLGL+KVNPRYIP LR TF FPQSLGI+GGKPGASTYI+G Q E A YLDPHDVQ V+N
Sbjct: 316 LVLGLDKVNPRYIPLLRSTFKFPQSLGIMGGKPGASTYIIGAQNEKAFYLDPHDVQQVVN 375

Query: 334 IGKDDLE-ADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGA 392
           I  D  E   TS+YH +++RHI LDSIDPSLAIGFYCRDKDDFDDFC++ASKLAEESNGA
Sbjct: 376 ISGDTQEPTSTSSYHCNIMRHIPLDSIDPSLAIGFYCRDKDDFDDFCSQASKLAEESNGA 435

Query: 393 PLFTVTQTH--KKPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL 443
           PLFTVTQ+    K V  +DV G+  G  E+D  G+   ND   N  EDDWQLL
Sbjct: 436 PLFTVTQSRSFSKQVTSNDVSGDNTGFQEEDFPGMDRGNDTGTN--EDDWQLL 486

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507987|ref|XP_003624282.1| Cysteine protease ATG4 [Medicago truncatula] gi|147742964|sp|A2Q1V6.1|ATG4_MEDTR RecName: Full=Cysteine protease ATG4; AltName: Full=Autophagy-related protein 4 gi|124359485|gb|ABN05923.1| Peptidase C54 [Medicago truncatula] gi|355499297|gb|AES80500.1| Cysteine protease ATG4 [Medicago truncatula]

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 282/412 (68%), Positives = 324/412 (78%), Gaps = 5/412 (1%)

Query: 34  GSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNG 93
           G +  V+++V+ GSMRR  ERVLG  RT +SSS  DIWLLGVCHKI+Q E+ GD    N 
Sbjct: 79  GWAAAVRKVVSGGSMRRFQERVLGSCRTDVSSSDGDIWLLGVCHKISQHESTGDVDIRNV 138

Query: 94  LAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRK 153
            A F QDF SRILI+YRKGFD I DSK TSDV WGCMLRSSQMLVAQALLFH+LGR WRK
Sbjct: 139 FAAFEQDFFSRILITYRKGFDAIEDSKYTSDVNWGCMLRSSQMLVAQALLFHKLGRSWRK 198

Query: 154 PLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARC 213
            + KP D+EY++IL LFGDSE + FSIHNLLQAGK YGLA GSWVGPYAMCR+WE LAR 
Sbjct: 199 TVDKPVDKEYIDILQLFGDSEAAAFSIHNLLQAGKGYGLAVGSWVGPYAMCRTWEVLARN 258

Query: 214 QRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 273
           QR +   G Q LPMAIYVVSGDEDGERGGAPVVCI+DA + C  FS+G   WTP+LLLVP
Sbjct: 259 QREKNEQGEQLLPMAIYVVSGDEDGERGGAPVVCIEDACKRCLEFSRGLVPWTPLLLLVP 318

Query: 274 LVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVIN 333
           LVLGL+KVN RYIP L+ TF FPQSLGI+GGKPGASTYI+GVQ + A YLDPH+V+PV+N
Sbjct: 319 LVLGLDKVNLRYIPLLQSTFKFPQSLGILGGKPGASTYIIGVQNDKAFYLDPHEVKPVVN 378

Query: 334 IGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAP 393
           I  D  E +TS+YH ++ RH+ LDSIDPSLAIGFYCRDKDDFDDFC+RA+KLAEESNGAP
Sbjct: 379 ITGDTQEPNTSSYHCNISRHMPLDSIDPSLAIGFYCRDKDDFDDFCSRATKLAEESNGAP 438

Query: 394 LFTVTQTHKKP--VNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL 443
           LFTV Q+   P  V  + V G+     EDDSL +  +NDA    +EDDWQ L
Sbjct: 439 LFTVAQSRSLPMQVTSNSVSGDDTRFEEDDSLSMNLVNDA---GNEDDWQFL 487

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514549|gb|AFK45336.1| unknown [Lotus japonicus]

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 288/489 (58%), Positives = 335/489 (68%), Gaps = 48/489 (9%)

Query: 1   MKGFREKAGASKCFSKSTPDTPNRSLASVGSELGSSETV-------KRLVTAG-SMRRIH 52
           +K F ++  A+KC SKS+ +T + S     S+ GSS++            T+G S+   +
Sbjct: 3   LKAFCDRIVAAKCSSKSSTETVDNSQVPACSKAGSSDSKFPKASLWSSFFTSGFSVIETY 62

Query: 53  ERVLGPSRTGISSSTSD----------IWL--------------------------LGVC 76
            +     +  + S  S            WL                          LGVC
Sbjct: 63  SKSPASEKKAVHSQNSGWGCCCEESCYCWLNEEIPRACTLGQAELTFQALMVIYGFLGVC 122

Query: 77  HKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQM 136
           HK +Q E+ GD   +   A F QDFSS+IL++YRKGFD IGDSK TSDV WGCMLRSSQM
Sbjct: 123 HKFSQQESTGDVDNSTVFAAFEQDFSSKILLTYRKGFDAIGDSKYTSDVNWGCMLRSSQM 182

Query: 137 LVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGS 196
           LVAQALLFH+LGR WRK   KP D+EY++IL  FGDSE S FSIHNLLQAGK YGLA GS
Sbjct: 183 LVAQALLFHKLGRMWRKTTDKPLDKEYLDILQHFGDSEASSFSIHNLLQAGKGYGLAVGS 242

Query: 197 WVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCS 256
           WVGPYAMCRSWE LAR QR     G Q LPMA+YVVSGDEDGERGGAPVVCI+DASR CS
Sbjct: 243 WVGPYAMCRSWEVLARNQRETNDHGEQPLPMALYVVSGDEDGERGGAPVVCIEDASRRCS 302

Query: 257 VFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQ 316
            FS+G A WTP+LLLVPLVLGL+KVN RYIP L+ TF FPQSLGI+GGKPGASTYI+GVQ
Sbjct: 303 EFSRGLAAWTPLLLLVPLVLGLDKVNLRYIPLLQSTFKFPQSLGILGGKPGASTYIIGVQ 362

Query: 317 EESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFD 376
            E A YLDPHDVQPV++I  D  + +TS+YH +++R + LDSIDPSLAIGFYCRDKDDFD
Sbjct: 363 NEKAFYLDPHDVQPVVHINGDAQDPNTSSYHCNIVRQMPLDSIDPSLAIGFYCRDKDDFD 422

Query: 377 DFCARASKLAEESNGAPLFTVTQTHKKPVNHS--DVLGETGGVPEDDSLGVMSMNDAVGN 434
           DFC+RASKLAEESNGAPLFTV Q    P   +  DV G+  G  EDDS GV  +NDA  N
Sbjct: 423 DFCSRASKLAEESNGAPLFTVAQFRSFPFQDAGYDVSGDNTGFQEDDSHGVDLLNDAGTN 482

Query: 435 AHEDDWQLL 443
             EDDWQLL
Sbjct: 483 --EDDWQLL 489

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	443
TAIR|locus:2080447	477	AT3G59950 [Arabidopsis thalian	0.882	0.819	0.588	2.3e-131
TAIR|locus:2051754	467	AT2G44140 "AT2G44140" [Arabido	0.887	0.841	0.583	1.1e-129
UNIPROTKB|Q2XPP4	478	ATG4B "Cysteine protease ATG4B	0.943	0.874	0.549	6.1e-126
ZFIN|ZDB-GENE-040917-3	394	atg4b "ATG4 autophagy related	0.720	0.809	0.333	3.8e-46
MGI|MGI:1913865	393	Atg4b "autophagy related 4B, c	0.697	0.786	0.330	1.5e-44
UNIPROTKB|F1MJZ9	393	ATG4B "Cysteine protease ATG4B	0.697	0.786	0.345	1.9e-44
UNIPROTKB|Q6PZ03	393	ATG4B "Cysteine protease ATG4B	0.697	0.786	0.345	1.9e-44
UNIPROTKB|Q9Y4P1	393	ATG4B "Cysteine protease ATG4B	0.697	0.786	0.336	6.4e-44
UNIPROTKB|F1LRG2	394	Atg4b "Protein Atg4b" [Rattus	0.697	0.784	0.327	3.5e-43
ZFIN|ZDB-GENE-050522-430	375	atg4a "ATG4 autophagy related	0.641	0.757	0.331	1.5e-42

TAIR|locus:2080447 AT3G59950 [Arabidopsis thaliana (taxid:3702)]

 Score = 1267 (451.1 bits), Expect = 2.3e-131, Sum P(2) = 2.3e-131
 Identities = 236/401 (58%), Positives = 300/401 (74%)

Query:    43 VTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFS 102
             + +G++RR  +RVLGPSRTGISSSTS+IWLLGVC+KI++               F QDFS
Sbjct:    87 MASGAIRRFQDRVLGPSRTGISSSTSEIWLLGVCYKISEGESSEEADAGRVLAAFRQDFS 146

Query:   103 SRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDRE 162
             S IL++YR+GF+PIGD+  TSDV WGCMLRS QML AQALLF RLGR WRK   +P D +
Sbjct:   147 SLILMTYRRGFEPIGDTTYTSDVNWGCMLRSGQMLFAQALLFQRLGRSWRKKDSEPADEK 206

Query:   163 YVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGC 222
             Y+EIL LFGD+E S FSIHNL+ AG++YGLAAGSWVGPYA+CRSWE+LAR  + ET    
Sbjct:   207 YLEILELFGDTEASAFSIHNLILAGESYGLAAGSWVGPYAVCRSWESLARKNKEETDDKH 266

Query:   223 QSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPIXXXXXXXXXXEKVN 282
             +S  MA+++VSG EDGERGGAP++CI+D ++ C  FS+G+ +W PI          ++VN
Sbjct:   267 KSFSMAVHIVSGSEDGERGGAPILCIEDVTKTCLEFSEGETEWPPILLLVPLVLGLDRVN 326

Query:   283 PRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEAD 342
             PRYIP+L  TFTFPQSLGI+GGKPGASTYIVGVQE+   YLDPHDVQ V+ + K++ + D
Sbjct:   327 PRYIPSLIATFTFPQSLGILGGKPGASTYIVGVQEDKGFYLDPHDVQQVVTVKKENQDVD 386

Query:   343 TSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHK 402
             TS+YH + +R++ L+S+DPSLA+GFYC+ KDDFDDFC RA+KLA +SNGAPLFTVTQ+H+
Sbjct:   387 TSSYHCNTLRYVPLESLDPSLALGFYCQHKDDFDDFCIRATKLAGDSNGAPLFTVTQSHR 446

Query:   403 KPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL 443
             +    +D      G+ E  S    +  +  G  HEDDWQLL
Sbjct:   447 R----NDC-----GIAETSS-STETSTEISGEEHEDDWQLL 477

GO:0005737 "cytoplasm" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2051754 AT2G44140 "AT2G44140" [Arabidopsis thaliana (taxid:3702)]

 Score = 1253 (446.1 bits), Expect = 1.1e-129, Sum P(2) = 1.1e-129
 Identities = 240/411 (58%), Positives = 303/411 (73%)

Query:    34 GSSETVKRL-VTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXX 92
             G +  VKR+ + +G++RR  ERVLGP+RTG+ S+TSD+WLLGVC+KI+            
Sbjct:    74 GWTAFVKRVSMASGAIRRFQERVLGPNRTGLPSTTSDVWLLGVCYKISADENSGETDTGT 133

Query:    93 XXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWR 152
                    DFSS+IL++YRKGF+P  D+  TSDV WGCM+RSSQML AQALLFHRLGR W 
Sbjct:   134 VLAALQLDFSSKILMTYRKGFEPFRDTTYTSDVNWGCMIRSSQMLFAQALLFHRLGRAWT 193

Query:   153 KPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALAR 212
             K  + P ++EY+E L  FGDSE S FSIHNL+ AG +YGLAAGSWVGPYA+CR+WE+LA 
Sbjct:   194 KKSELP-EQEYLETLEPFGDSEPSAFSIHNLIIAGASYGLAAGSWVGPYAICRAWESLAC 252

Query:   213 CQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPIXXXX 272
              +R +T    Q+LPMA+++VSG EDGERGGAP++CI+DA++ C  FSKGQ++WTPI    
Sbjct:   253 KKRKQTDSKNQTLPMAVHIVSGSEDGERGGAPILCIEDATKSCLEFSKGQSEWTPIILLV 312

Query:   273 XXXXXXEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVI 332
                   + VNPRYIP+L  TFTFPQS+GI+GGKPGASTYIVGVQE+   YLDPH+VQ V+
Sbjct:   313 PLVLGLDSVNPRYIPSLVATFTFPQSVGILGGKPGASTYIVGVQEDKGFYLDPHEVQQVV 372

Query:   333 NIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGA 392
              + K+  + DTS+YH +V+R++ L+S+DPSLA+GFYCRDKDDFDDFC RA KLAEESNGA
Sbjct:   373 TVNKETPDVDTSSYHCNVLRYVPLESLDPSLALGFYCRDKDDFDDFCLRALKLAEESNGA 432

Query:   393 PLFTVTQTHKKPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL 443
             PLFTVTQTH   +N S+      G  +DDS           +  EDDWQ+L
Sbjct:   433 PLFTVTQTHTA-INQSNY-----GFADDDS----------EDEREDDWQML 467

GO:0006914 "autophagy" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|Q2XPP4 ATG4B "Cysteine protease ATG4B" [Oryza sativa Indica Group (taxid:39946)]

 Score = 1237 (440.5 bits), Expect = 6.1e-126, P = 6.1e-126
 Identities = 239/435 (54%), Positives = 305/435 (70%)

Query:    14 FSKSTPDTPNRSLASVGSELGSSETVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLL 73
             F      + N+S  S          ++R+V +GSM R     LG S+     ++SD+W L
Sbjct:    56 FEAHQDSSANKSPKSSSGSYDWLRVLRRIVCSGSMWRF----LGTSKV---LTSSDVWFL 108

Query:    74 GVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRS 133
             G C+K++                F +DFSSRI I+YR+GFD I DSK TSDV WGCM+RS
Sbjct:   109 GKCYKLSSEESSSDSDSESGHATFLEDFSSRIWITYRRGFDAISDSKYTSDVNWGCMVRS 168

Query:   134 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLA 193
             SQMLVAQAL+FH LGR WR+P +KP++ EY+ ILH+FGDSE   FSIHNLLQAG +YGLA
Sbjct:   169 SQMLVAQALIFHHLGRSWRRPSEKPYNPEYIGILHMFGDSEACAFSIHNLLQAGNSYGLA 228

Query:   194 AGSWVGPYAMCRSWEALARCQRAETGL--GCQSLPMAIYVVSGDEDGERGGAPVVCIDDA 251
             AGSWVGPYAMCR+W+ L R  R +  +  G +S PMA+YVVSGDEDGERGGAPVVCID A
Sbjct:   229 AGSWVGPYAMCRAWQTLVRTNREQHEVVDGNESFPMALYVVSGDEDGERGGAPVVCIDVA 288

Query:   252 SRHCSVFSKGQADWTPIXXXXXXXXXXEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTY 311
             ++ C  F+KGQ+ W+PI          +K+NPRYIP L+ TFTFPQSLGI+GGKPG STY
Sbjct:   289 AQLCCDFNKGQSTWSPILLLVPLVLGLDKINPRYIPLLKETFTFPQSLGILGGKPGTSTY 348

Query:   312 IVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRD 371
             I GVQ++ A+YLDPH+VQ  ++I  D++EADTS+YH   +R + LD IDPSLAIGFYCRD
Sbjct:   349 IAGVQDDRALYLDPHEVQMAVDIAADNIEADTSSYHCSTVRDLALDLIDPSLAIGFYCRD 408

Query:   372 KDDFDDFCARASKLAEESNGAPLFTVTQT---HKKPVNHSDVLGETGGVPEDDSLGVMSM 428
             KDDFDDFC+RA++L +++NGAPLFTV Q+    K+  N  DVLG +G    D ++ V  +
Sbjct:   409 KDDFDDFCSRATELVDKANGAPLFTVVQSVQPSKQMYNQDDVLGISG----DGNINVEDL 464

Query:   429 NDAVGNAHEDDWQLL 443
              DA G   E++WQ+L
Sbjct:   465 -DASGETGEEEWQIL 478

GO:0005737 "cytoplasm" evidence=ISS

GO:0005775 "vacuolar lumen" evidence=ISS

GO:0005776 "autophagic vacuole" evidence=ISS

GO:0006914 "autophagy" evidence=ISS

GO:0016807 "cysteine-type carboxypeptidase activity" evidence=ISS

GO:0019786 "APG8-specific protease activity" evidence=ISS

ZFIN|ZDB-GENE-040917-3 atg4b "ATG4 autophagy related 4 homolog B (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 113/339 (33%), Positives = 168/339 (49%)

Query:   100 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWR-KPLQKP 158
             D +SR+  +YRK F PIG +  TSD GWGCMLR  QM++ +AL+   LGR W+  P Q+ 
Sbjct:    45 DVTSRLWFTYRKNFQPIGGTGPTSDTGWGCMLRCGQMILGEALICRHLGRDWKWSPGQRQ 104

Query:   159 FDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCR---------SWEA 209
                EYV IL+ F D + S +SIH + Q G   G + G W GP  + +         SW  
Sbjct:   105 RP-EYVSILNAFIDKKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDSWSR 163

Query:   210 LARCQRAETGLGCQSLPMAIYVVSGDEDGERGGA-----PVVCIDDASRHCSVFSKGQAD 264
             LA     +  +  + +           D +RG       P     D    C++  +  A 
Sbjct:   164 LAVHVAMDNTVVIEEIKRLCMPWL---DFDRGACAVSEEPREMNGDLEGACALAEEETAL 220

Query:   265 WTPIXXXXXXXXXXEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLD 324
             W P+            +N  YI  L+  F  PQSLG++GGKP ++ Y +G   +  IYLD
Sbjct:   221 WKPLVLLIPLRLGLSDINEAYIEPLKQCFMMPQSLGVIGGKPNSAHYFIGFVGDELIYLD 280

Query:   325 PHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASK 384
             PH  QP ++  +D    D S +       +H+  +DPS+A GF+C+ +DDFDD+CA+  K
Sbjct:   281 PHTTQPAVDPSEDGHFPDDSYHCQHPPCRMHICELDPSIAAGFFCQTEDDFDDWCAQIRK 340

Query:   385 LAEESNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDDSL 423
             ++    G P+F +  +    +  +DVL  T    + D L
Sbjct:   341 VSN-CRGLPMFELVDSQPSHLITADVLNLTPDFSDSDRL 378

GO:0005737 "cytoplasm" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

MGI|MGI:1913865 Atg4b "autophagy related 4B, cysteine peptidase" [Mus musculus (taxid:10090)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 107/324 (33%), Positives = 161/324 (49%)

Query:   100 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPF 159
             D +SR+  +YR+ F  IG +  TSD GWGCMLR  QM+ AQAL+   LGR WR   +K  
Sbjct:    45 DVASRLWFTYRRNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQ 104

Query:   160 DREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETG 219
                Y  +L+ F D + S +SIH + Q G   G + G W GP  + +  + LA      + 
Sbjct:   105 PDSYFNVLNAFLDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD-TWSS 163

Query:   220 LGCQSLPMAIYVVSGDEDGERGGAPVVCID------DASRHCSVFSKGQ------ADWTP 267
             L    + M   VV  +E      A + C        D+ RHC+ F  G       + W P
Sbjct:   164 LAVH-IAMDNTVVM-EEIRRLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRP 221

Query:   268 IXXXXXXXXXXEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHD 327
             +            +N  Y+ TL+  F  PQSLG++GGKP ++ Y +G   E  IYLDPH 
Sbjct:   222 LVLLIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHT 281

Query:   328 VQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAE 387
              QP + +       D S +       + +  +DPS+A+GF+C+ ++DF+D+C +  KL++
Sbjct:   282 TQPAVELTDSCFIPDESFHCQHPPSRMGIGELDPSIAVGFFCKTEEDFNDWCQQVKKLSQ 341

Query:   388 ESNGAPLFTVTQTHKKPVNHSDVL 411
                  P+F + +     +   DVL
Sbjct:   342 LGGALPMFELVEQQPSHLACQDVL 365

GO:0000045 "autophagic vacuole assembly" evidence=ISO

GO:0004175 "endopeptidase activity" evidence=ISO

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0006508 "proteolysis" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006914 "autophagy" evidence=ISO;ISS

GO:0008152 "metabolic process" evidence=IDA;TAS

GO:0008233 "peptidase activity" evidence=IDA

GO:0008234 "cysteine-type peptidase activity" evidence=ISO;TAS

GO:0010508 "positive regulation of autophagy" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=ISO

UNIPROTKB|F1MJZ9 ATG4B "Cysteine protease ATG4B" [Bos taurus (taxid:9913)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 112/324 (34%), Positives = 157/324 (48%)

Query:   100 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPF 159
             D +SR+  +YRK F  IG +  TSD GWGCMLR  QM+ AQAL+   LGR WR   +K  
Sbjct:    45 DVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQ 104

Query:   160 DREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETG 219
                Y  +L  F D + S +SIH + Q G   G + G W GP  + +  + LA      + 
Sbjct:   105 PDSYCSVLQAFLDRKDSCYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD-TWSA 163

Query:   220 LGCQSLPMAIYVVSGDEDGE-RGGAPVVCID----DASRHCSVFSKGQ------ADWTPI 268
             L    + M   VV  D     R   P    +    D+ RHC+ F  G       A W P+
Sbjct:   164 LAVH-VAMDNTVVMADIRRLCRSSLPCAGAEAFPADSERHCNGFPAGAEGGGRAAPWRPL 222

Query:   269 XXXXXXXXXXEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDV 328
                         VN  Y  TL+  F  PQSLG++GGKP ++ Y +G   E  IYLDPH  
Sbjct:   223 VLLIPLRLGLADVNAAYAGTLKHCFRMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTT 282

Query:   329 QPVINIGKDDLEADTSTYHSD-VIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAE 387
             QP +    D       ++H       + +  +DPS+A+GF+C  +DDF+D+C + SKL+ 
Sbjct:   283 QPAV-AAADRCPVPDESFHCQHPPGRMSIAELDPSIAVGFFCETEDDFNDWCQQVSKLSL 341

Query:   388 ESNGAPLFTVTQTHKKPVNHSDVL 411
                  P+F + +     +   DVL
Sbjct:   342 LGGALPMFELVEQQPSHLACPDVL 365

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q6PZ03 ATG4B "Cysteine protease ATG4B" [Bos taurus (taxid:9913)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 112/324 (34%), Positives = 157/324 (48%)

Query:   100 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPF 159
             D +SR+  +YRK F  IG +  TSD GWGCMLR  QM+ AQAL+   LGR WR   +K  
Sbjct:    45 DVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQ 104

Query:   160 DREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETG 219
                Y  +L  F D + S +SIH + Q G   G + G W GP  + +  + LA      + 
Sbjct:   105 PDSYCSVLQAFLDRKDSCYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD-TWSA 163

Query:   220 LGCQSLPMAIYVVSGDEDGE-RGGAPVVCID----DASRHCSVFSKGQ------ADWTPI 268
             L    + M   VV  D     R   P    +    D+ RHC+ F  G       A W P+
Sbjct:   164 LAVH-VAMDNTVVMADIRRLCRSSLPCAGAEAFPADSERHCNGFPAGAEGGGRAAPWRPL 222

Query:   269 XXXXXXXXXXEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDV 328
                         VN  Y  TL+  F  PQSLG++GGKP ++ Y +G   E  IYLDPH  
Sbjct:   223 VLLIPLRLGLADVNAAYAGTLKHCFRMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTT 282

Query:   329 QPVINIGKDDLEADTSTYHSD-VIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAE 387
             QP +    D       ++H       + +  +DPS+A+GF+C  +DDF+D+C + SKL+ 
Sbjct:   283 QPAV-AAADRCPVPDESFHCQHPPGRMSIAELDPSIAVGFFCETEDDFNDWCQQVSKLSL 341

Query:   388 ESNGAPLFTVTQTHKKPVNHSDVL 411
                  P+F + +     +   DVL
Sbjct:   342 LGGALPMFELVEQQPSHLACPDVL 365

GO:0005737 "cytoplasm" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q9Y4P1 ATG4B "Cysteine protease ATG4B" [Homo sapiens (taxid:9606)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 109/324 (33%), Positives = 158/324 (48%)

Query:   100 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPF 159
             D +SR+  +YRK F  IG +  TSD GWGCMLR  QM+ AQAL+   LGR WR   +K  
Sbjct:    45 DVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQ 104

Query:   160 DREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETG 219
                Y  +L+ F D + S +SIH + Q G   G + G W GP  + +  + LA      + 
Sbjct:   105 PDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD-TWSS 163

Query:   220 LGCQSLPMAIYVVSGDEDGERGGAPVVCID------DASRHCSVFSKGQ------ADWTP 267
             L    + M   VV  +E        V C        D+ RHC+ F  G       + W P
Sbjct:   164 LAVH-IAMDNTVVM-EEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRP 221

Query:   268 IXXXXXXXXXXEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHD 327
             +            +N  Y+ TL+  F  PQSLG++GGKP ++ Y +G   E  IYLDPH 
Sbjct:   222 LVLLIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHT 281

Query:   328 VQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAE 387
              QP +         D S +       + +  +DPS+A+GF+C+ +DDF+D+C +  KL+ 
Sbjct:   282 TQPAVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSL 341

Query:   388 ESNGAPLFTVTQTHKKPVNHSDVL 411
                  P+F + +     +   DVL
Sbjct:   342 LGGALPMFELVELQPSHLACPDVL 365

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006508 "proteolysis" evidence=IDA

GO:0008234 "cysteine-type peptidase activity" evidence=IDA

GO:0006914 "autophagy" evidence=IGI

GO:0000045 "autophagic vacuole assembly" evidence=IGI

GO:0010508 "positive regulation of autophagy" evidence=IDA

GO:0004175 "endopeptidase activity" evidence=IDA

UNIPROTKB|F1LRG2 Atg4b "Protein Atg4b" [Rattus norvegicus (taxid:10116)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 106/324 (32%), Positives = 159/324 (49%)

Query:   100 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPF 159
             D +SR+  +YR+ F  IG +  TSD GWGCMLR  QM+ AQAL+   LGR WR   +K  
Sbjct:    46 DVASRLWFTYRRNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQ 105

Query:   160 DREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETG 219
                Y  +L+ F D + S +SIH + Q G   G + G W GP  + +  + LA      + 
Sbjct:   106 PDSYFSVLNAFLDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD-TWSS 164

Query:   220 LGCQSLPMAIYVVSGDEDGERGGAPVVCIDDAS------RHCSVFSKGQA------DWTP 267
             L    + M   VV  +E      A + C   A+      RHC+    G         W P
Sbjct:   165 LAVH-IAMDNTVVM-EEIRRLCRASLPCAGAAALSMESERHCNGLPAGAEVTNRPLAWRP 222

Query:   268 IXXXXXXXXXXEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHD 327
             +            +N  Y+ TL+  F  PQSLG++GGKP ++ Y +G   E  IYLDPH 
Sbjct:   223 LVLLIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHT 282

Query:   328 VQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAE 387
              QP + +       D S +       + +  +DPS+A+GF+C+ ++DF+D+C +  KL++
Sbjct:   283 TQPAVELTDSCFIPDESFHCQHPPCRMGIGELDPSIAVGFFCKTEEDFNDWCQQVKKLSQ 342

Query:   388 ESNGAPLFTVTQTHKKPVNHSDVL 411
                  P+F + +     +   DVL
Sbjct:   343 LGGALPMFELVEQQPSHLACQDVL 366

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

ZFIN|ZDB-GENE-050522-430 atg4a "ATG4 autophagy related 4 homolog A (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 102/308 (33%), Positives = 155/308 (50%)

Query:   100 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPF 159
             D  SR+  +YRK F PIG +  +SD GWGCMLR  QM++AQAL+   LGR WR   +K  
Sbjct:    45 DVRSRLWFTYRKKFSPIGGTGPSSDAGWGCMLRCGQMILAQALICSHLGRDWRWDPEKHQ 104

Query:   160 DREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETG 219
              +EY  IL  F D + S +SIH + Q G   G + G W GP  + +  + LA      + 
Sbjct:   105 PKEYQRILDCFLDKKDSCYSIHQMAQMGVGEGKSVGEWYGPNTVAQVLKKLALFDDWNS- 163

Query:   220 LGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHC-----SVFSKGQADWTPIXXXXXX 274
                    +++YV S D          V I+D  + C      + S+   DW P+      
Sbjct:   164 -------LSVYV-SMDN--------TVVIEDIKKLCVRADLQLQSQQPLDWRPLLLVIPL 207

Query:   275 XXXXEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINI 334
                   +NP YI  L+  F  PQS G++GGKP  + Y +G  ++  IYLDPH  Q  ++ 
Sbjct:   208 RMGINSINPVYIQALKECFKMPQSCGVLGGKPNLAYYFIGFIDDELIYLDPHTTQQAVDT 267

Query:   335 GKDDLEADTSTYHSDVIRH-IHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAP 393
              +     D  ++H     H + + S+DPS+A+GF+C+ ++DFD +C    +   +     
Sbjct:   268 -ESGSAVDDQSFHCQRTPHRMKITSLDPSVALGFFCKSEEDFDSWCDLVQQELLKKRNLR 326

Query:   394 LFTVTQTH 401
             +F + + H
Sbjct:   327 MFELVEKH 334

GO:0005737 "cytoplasm" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S929	ATG4A_ARATH	3, ., 4, ., 2, 2, ., -	0.6472	0.8442	0.8008	yes	no
Q7XPW8	ATG4B_ORYSJ	3, ., 4, ., 2, 2, ., -	0.5885	0.9435	0.8744	yes	no
Q2XPP4	ATG4B_ORYSI	3, ., 4, ., 2, 2, ., -	0.5839	0.9435	0.8744	N/A	no
A2XHJ5	ATG4A_ORYSI	3, ., 4, ., 2, 2, ., -	0.5691	0.9435	0.8837	N/A	no
A2Q1V6	ATG4_MEDTR	3, ., 4, ., 2, 2, ., -	0.6844	0.9187	0.8357	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	443
pfam03416	277	pfam03416, Peptidase_C54, Peptidase family C54	1e-132

>gnl|CDD|217545 pfam03416, Peptidase_C54, Peptidase family C54

 Score =  380 bits (979), Expect = e-132
 Identities = 133/292 (45%), Positives = 170/292 (58%), Gaps = 18/292 (6%)

Query: 93  GLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWR 152
           GL  F  D  SRI  +YR+GF PIG +  TSD GWGCMLR+ QML+AQAL+ H LGR WR
Sbjct: 3   GLEAFLSDVYSRIWFTYRRGFPPIGGTGFTSDCGWGCMLRTGQMLLAQALIIHHLGRDWR 62

Query: 153 KPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY-GLAAGSWVGPYAMCRSWEALA 211
            P +K  D EY +IL  FGDS  +PFSIH  +Q GK+  G   G W GP  + R  + L 
Sbjct: 63  WPAEKEPDEEYKKILAWFGDSPDAPFSIHQFVQMGKSLCGKKPGEWFGPNTVARILKKLV 122

Query: 212 RCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLL 271
                 +GL           V  D+  E+              CS  + GQ+ W P+LLL
Sbjct: 123 -KFDDWSGL--AVYVAMDGTVVYDDIVEK--------------CSAPNNGQSAWKPLLLL 165

Query: 272 VPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPV 331
           +PL LG++K+NP YI  L+  F+ PQS+GI+GGKP  S Y VG Q +  IYLDPH VQ  
Sbjct: 166 IPLRLGIDKINPVYIEALKECFSLPQSVGIIGGKPNQSLYFVGFQGDELIYLDPHTVQEA 225

Query: 332 INIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARAS 383
           + + +     D  TYH   +R +H   +DPSLAIGF CRD+DDFD++C R  
Sbjct: 226 VTVNQKGFPVDDETYHCRSLRKLHFSDMDPSLAIGFLCRDEDDFDNWCERLQ 277

Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	443
KOG2674	409	consensus Cysteine protease required for autophagy	100.0
PF03416	278	Peptidase_C54: Peptidase family C54 This family be	100.0
PF07910	218	Peptidase_C78: Peptidase family C78; InterPro: IPR	97.88
KOG2433	577	consensus Uncharacterized conserved protein [Funct	97.25
KOG4696	393	consensus Uncharacterized conserved protein [Funct	90.63

>KOG2674 consensus Cysteine protease required for autophagy - Apg4p/Aut2p [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.7e-111  Score=849.77  Aligned_cols=345  Identities=43%  Similarity=0.815  Sum_probs=310.2

Q ss_pred             HHHH-HhcchhhhHHHHhcCCCCCCCCCCCCcEEEeCceecCCccccccccCCCcchHHHHHhccccEEEeecCCCccCC
Q 013448           39 VKRL-VTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIG  117 (443)
Q Consensus        39 ~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~vwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~df~SriWfTYR~~F~pI~  117 (443)
                      +|++ +.+...++..++++.+..++++..+++||+||++|.+..++.          ++|+.||.||||||||++|+||+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lg~~y~is~~~~----------e~f~~D~~Sriw~TYR~~F~pig   86 (409)
T KOG2674|consen   17 VKTLGEASSHIRFLGKTVLFAELENIESGGEDVWILGRRYKISTEES----------EEFLSDVSSRLWFTYRRGFSPIG   86 (409)
T ss_pred             HHHHHhhhhhhhhhhheecccccccCCCCCcceEEEeeeeeeccCHH----------HHHHHhhhhcceeeccCCCCccc
Confidence            5554 667777888889999999999999999999999999987641          79999999999999999999999


Q ss_pred             CCcccccCCcceeccchhHHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhhhcCCCCCCCchhhHHHHHHHHcCCCCccc
Q 013448          118 DSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSW  197 (443)
Q Consensus       118 ~s~~TSD~GWGCMLRsgQMLLAqAL~~~~LGrdwr~~~~~~~~~~~~~IL~lF~D~~~apFSIH~iv~~G~~~gk~pGeW  197 (443)
                      ++++|||+|||||||||||||||||+++||||+|+|+..++.+++|.+||++|.|.|.||||||||+++|..+||++|+|
T Consensus        87 ~t~~ttD~GWGCMlR~gQMllaqaL~~~~lGRdw~w~~~~~~~~~y~~il~~F~D~~~a~~SiHq~~~~G~~~~~~~g~W  166 (409)
T KOG2674|consen   87 GTGPTTDCGWGCMLRCGQMLLAQALICRHLGRDWRWTDEKRLEEEYLKILNLFEDEPDAPFSIHQIVQMGVGEGKAVGSW  166 (409)
T ss_pred             CCCcccCcceeeEEehhHHHHHHHHHHhhcccccccccccccchHHHHHHHhhcCCCccccCHHHHHHHHhhccCCCccc
Confidence            99999999999999999999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeeCC--------CCCCCCCCceeeccccccccccccCCCCCCccEE
Q 013448          198 VGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGD--------EDGERGGAPVVCIDDASRHCSVFSKGQADWTPIL  269 (443)
Q Consensus       198 fGPs~~a~~i~~L~~~~~~~~~~~~~~~~l~v~v~s~~--------~dge~~~~~vv~~dd~~~~c~~~~~~~~~w~plL  269 (443)
                      ||||++|+++++|....        .+.+.++||+.+.        +...+++.+.+++.+..+.|.+++.+..+|+|||
T Consensus       167 fGP~~~a~~~~~L~~~~--------~~~~~~~~v~~~~~vv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ewkpll  238 (409)
T KOG2674|consen  167 FGPNTVAQVLKKLARFD--------PWSSLAVYVAMDNAVIIRDIVEKCRRGPLPALTIEDATKQSLEFSNGITEWKPLL  238 (409)
T ss_pred             cCCcHHHHHHHHhhccC--------CCCCccEEEecccceEEeeeehhcccCCcccceecccchhhcccCCCCCCCcceE
Confidence            99999999999998753        2334566665432        3345567788888888888888988899999999


Q ss_pred             EEEeeeecCCCCCcchHHHHHHhhCCCceeEEecCCCCceEEEEEEecCceEeeCCCCcccccccCCCCCCCCCCccccC
Q 013448          270 LLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSD  349 (443)
Q Consensus       270 lLIPlRLGld~iNp~Y~~~Lk~~f~lpqsvGIiGGkP~~S~YFvG~q~d~LiYLDPH~~Q~av~~~~~~~~~~~~SyHc~  349 (443)
                      ||||||||++.|||.|+++||++|++||||||+||||+||+||||||||+|||||||+||++|++++ ....+.+||||+
T Consensus       239 LLVPvRLG~~~iNp~Yvp~lk~~f~~~q~lGI~GGkP~~S~YFvGyq~d~l~YLDPH~~Q~~V~vs~-~~~~~~esfHC~  317 (409)
T KOG2674|consen  239 LLIPLRLGITSINPSYVPALKECFEMPQSVGIIGGRPNHSLYFVGYQGDELFYLDPHYTQPAVEVSK-AKDVPDETFHCQ  317 (409)
T ss_pred             EEEEeeecccccChHHHHHHHHHhcchhhceeccCCCCcceEEEEEecceEEEeCCccCcccccccc-cCCCCccccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999873 223467899999


Q ss_pred             CcccccccccCCccEEEEEeCChhhHHHHHHHHHHHHhhcCC---CCcEEEecCCC
Q 013448          350 VIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNG---APLFTVTQTHK  402 (443)
Q Consensus       350 ~~r~m~i~~lDPSmalGFyc~~~~Df~df~~~i~~l~~~~~~---~pLF~v~~~~p  402 (443)
                      .++||++.+|||||||||||++++||++||.+++++...++.   +|||+..+.+.
T Consensus       318 ~~~km~f~~mDPS~alGF~c~~~~dF~~~c~~l~k~~~~s~~~~~~~lf~~~~~h~  373 (409)
T KOG2674|consen  318 SLRKMAFEDMDPSLALGFYCKDEDDFDNLCSELKKSLSLSSALEMFELFTRVPSHW  373 (409)
T ss_pred             chhhcchhhcCcceEEEEEecCHHHHHHHHHHHHHHhccccCcccccceecccccc
Confidence            999999999999999999999999999999999998766666   55665555544

>PF03416 Peptidase_C54: Peptidase family C54 This family belongs to family C54 of the peptidase classification

Probab=100.00  E-value=4.1e-100  Score=753.77  Aligned_cols=274  Identities=48%  Similarity=0.917  Sum_probs=213.0

Q ss_pred             chHHHHHhccccEEEeecCCCccCCCCcccccCCcceeccchhHHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhhhcCC
Q 013448           93 GLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGD  172 (443)
Q Consensus        93 ~~~~f~~df~SriWfTYR~~F~pI~~s~~TSD~GWGCMLRsgQMLLAqAL~~~~LGrdwr~~~~~~~~~~~~~IL~lF~D  172 (443)
                      +.++|++||+||||||||+||+||+++++|||+|||||||||||||||||++|++||+|++....+.++.+.+||+||.|
T Consensus         2 ~~~~~~~d~~s~iwfTYR~~F~~i~~s~~tSD~GWGCmlRs~QMlLAqaL~~~~lgr~~~~~~~~~~~~~~~~il~~F~D   81 (278)
T PF03416_consen    2 NKEEFLKDFSSRIWFTYRKGFPPIPGSGLTSDCGWGCMLRSGQMLLAQALLRHHLGRDWRWPDNSDNNEEYRRILSLFQD   81 (278)
T ss_dssp             THHHHHHHHHCSB---EEESS--TTTTS-SB-TTT-HHHHHHHHHHHHHHHHHHC-TT--TTTTSS--HHHHHHHHTTSS
T ss_pred             cHHHHHHHHhhheEEeccCCCCCCCCCCcccCCCcccccchhHHHHHHHHHHHhhcccccccccccCcHHHHHHHHhcCC
Confidence            46899999999999999999999999999999999999999999999999999999999998776667789999999999


Q ss_pred             CCCCCchhhHHHHHHHHc-CCCCccccCchHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeeCCCCCCCCCCceeecccc
Q 013448          173 SETSPFSIHNLLQAGKAY-GLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDA  251 (443)
Q Consensus       173 ~~~apFSIH~iv~~G~~~-gk~pGeWfGPs~~a~~i~~L~~~~~~~~~~~~~~~~l~v~v~s~~~dge~~~~~vv~~dd~  251 (443)
                      +++||||||||+++|.++ ||+||+||||+++|++|++|++..        ....++|||++++         +++.+|+
T Consensus        82 ~~~apfSIh~i~~~g~~~~g~~~G~W~gPs~~~~~l~~l~~~~--------~~~~l~v~v~~d~---------~i~~~d~  144 (278)
T PF03416_consen   82 SPSAPFSIHNIVQEGKSEFGKKPGEWFGPSTIAQALKKLVNEA--------DLSGLRVYVSSDG---------TIYYDDV  144 (278)
T ss_dssp             STTSTTSHHHHHHHHHTT-T--TTS-B-HHHHHHHHHHHHCC---------TTT--EEEE-BTT---------EEEHHHH
T ss_pred             CCCCcchHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHHHhc--------cccCceEEEeecc---------ccchhHH
Confidence            999999999999999987 999999999999999999999743        3446899998753         6788888


Q ss_pred             ccccccc--cCCCCCCccEEEEEeeeecCCCCCcchHHHHHHhhCCCceeEEecCCCCceEEEEEEecCceEeeCCCCcc
Q 013448          252 SRHCSVF--SKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQ  329 (443)
Q Consensus       252 ~~~c~~~--~~~~~~w~plLlLIPlRLGld~iNp~Y~~~Lk~~f~lpqsvGIiGGkP~~S~YFvG~q~d~LiYLDPH~~Q  329 (443)
                      .+.|...  ......|+|||||||+|||++++||+|+++|+++|++|||||||||||++|+||||+|+|+|||||||+||
T Consensus       145 ~~~~~~~~~~~~~~~~~~vLlliplrLGl~~in~~Y~~~l~~~l~~pq~vGiiGG~p~~a~YfvG~~~d~liYLDPH~~Q  224 (278)
T PF03416_consen  145 EELCSNSNPTKQSSWWKPVLLLIPLRLGLDKINPKYIPSLKSLLSLPQSVGIIGGRPNSALYFVGFQGDQLIYLDPHYVQ  224 (278)
T ss_dssp             HHHHCCS-S-----CE--EEEEEEEE-SSSS--GGGHHHHHHHCCSTTEEEEEEEETTEEEEEEEEETTEEEEE---SEE
T ss_pred             HHHHhhhccccccccCceEEEEEEeecCCCCCCHHHHHHHHHHhCCcccceeeccCCCceEEEEEEccCeEEEECCCCCe
Confidence            8776432  12345789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCCCCccccCCcccccccccCCccEEEEEeCChhhHHHHHHHHH
Q 013448          330 PVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARAS  383 (443)
Q Consensus       330 ~av~~~~~~~~~~~~SyHc~~~r~m~i~~lDPSmalGFyc~~~~Df~df~~~i~  383 (443)
                      +|++....+.+.+.+||||..+++|++++|||||+|||||+|++||++||++|+
T Consensus       225 ~a~~~~~~~~~~~~~s~h~~~~~~~~~~~lDPS~~lgF~~~~~~d~~~~~~~i~  278 (278)
T PF03416_consen  225 PAVDSQNNNFELDDSSYHCSSPRKMPISKLDPSMALGFYCRNEEDFEDFCKRIQ  278 (278)
T ss_dssp             E-----TTS-----GGGC-SSSEEEEGGGS-SEEEEEEEESSHHHHHHHHHHHH
T ss_pred             eCCccCCCCCcCCCCceecCCcccCcHhhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence            999876655544458999999999999999999999999999999999999985

; InterPro: IPR005078 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C54 (Aut2 peptidase family, clan CA), which are a group of proteins of unknown function.; PDB: 2CY7_A 2ZZP_A 2D1I_B 2Z0E_A 2Z0D_A 2P82_D.

>PF07910 Peptidase_C78: Peptidase family C78; InterPro: IPR012462 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.88  E-value=1.5e-05  Score=77.45  Aligned_cols=32  Identities=28%  Similarity=0.333  Sum_probs=22.4

Q ss_pred             eEEecCCCCceEEEEEEec-----CceEeeCCCCcccc
Q 013448          299 LGIVGGKPGASTYIVGVQE-----ESAIYLDPHDVQPV  331 (443)
Q Consensus       299 vGIiGGkP~~S~YFvG~q~-----d~LiYLDPH~~Q~a  331 (443)
                      --++|| ..||.=+||+.-     -+|+.||||++-.+
T Consensus       149 Piylqh-~ghS~TIvGie~~~~g~~~LLVlDP~~~~~~  185 (218)
T PF07910_consen  149 PIYLQH-DGHSRTIVGIERNKDGEVNLLVLDPHYTGSD  185 (218)
T ss_dssp             -EEEEE-TTEEEEEEEEEE-TT--EEEEEE-TT--S-S
T ss_pred             CeEeCc-cccceEEEEEEECCCCCEEEEEECCCCCCHH
Confidence            345666 999999999975     47999999987764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry contains UfSP1 and UfSP2, which are cysteine peptidases required for the processing and activation of Ubiquitin fold modifier 1 (Ufm1, IPR005375 from INTERPRO) and for its release from conjugated cellular proteins. UfSP1 and UfSP2 are 217 aa and 461 aa respectively [, ]. The peptidases belong to MEROPS peptidase family C78, clan CA. The UfSP2 family have an N-terminal extension with one or more zinc finger domains of the C2H2 type (IPR007087 from INTERPRO), which have been shown to be involved in protein:protein interaction. UfSP2 is present in most, if not all, multi-cellular organisms including plants, nematodes, flies, and mammals, whereas UfSP1 is not present in plants and nematodes []. ; PDB: 3OQC_B 2Z84_A.

>KOG2433 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.00062  Score=71.02  Aligned_cols=69  Identities=28%  Similarity=0.486  Sum_probs=42.2

Q ss_pred             ccccCCcceeccchhHHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhhhcCC---CCCCCchhhHHHHHHHHcCCCCccc
Q 013448          121 ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGD---SETSPFSIHNLLQAGKAYGLAAGSW  197 (443)
Q Consensus       121 ~TSD~GWGCMLRsgQMLLAqAL~~~~LGrdwr~~~~~~~~~~~~~IL~lF~D---~~~apFSIH~iv~~G~~~gk~pGeW  197 (443)
                      -.-|.||||..||-|.+-.--.+.   |-    + .++ -+.+++|-+...|   .| |.|             +---+|
T Consensus       402 ~idD~GWGCAYRSlQTIcSWFilq---GY----T-~~p-IPtHrEiQqaLvdi~DKp-A~F-------------VGSrQW  458 (577)
T KOG2433|consen  402 GIDDSGWGCAYRSLQTICSWFILQ---GY----T-DKP-IPTHREIQQALVDIQDKP-AKF-------------VGSRQW  458 (577)
T ss_pred             ccccCCcchhhHhHHHHHHHHHHc---Cc----c-CCC-CCcHHHHHHHHHhccCcc-cce-------------ecccce
Confidence            357999999999999876654432   21    1 111 1234444444333   22 111             112379


Q ss_pred             cCchHHHHHHHHHHH
Q 013448          198 VGPYAMCRSWEALAR  212 (443)
Q Consensus       198 fGPs~~a~~i~~L~~  212 (443)
                      .|-+.+..++..|++
T Consensus       459 IGStEis~vLn~ll~  473 (577)
T KOG2433|consen  459 IGSTEISFVLNELLK  473 (577)
T ss_pred             ecchhHHHHHHHHhc
Confidence            999999999999986

>KOG4696 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.63  E-value=0.2  Score=51.10  Aligned_cols=38  Identities=39%  Similarity=0.678  Sum_probs=29.5

Q ss_pred             EeecCCCccCCC----CcccccCCcceeccchhHHHHHHHHH
Q 013448          107 ISYRKGFDPIGD----SKITSDVGWGCMLRSSQMLVAQALLF  144 (443)
Q Consensus       107 fTYR~~F~pI~~----s~~TSD~GWGCMLRsgQMLLAqAL~~  144 (443)
                      ...-|||.-|+.    ...--|.||||..|+.|||++..|..
T Consensus       173 ~awnkGFDi~~ALH~D~R~~G~K~W~~~~~~~qml~s~gl~~  214 (393)
T KOG4696|consen  173 SAWNKGFDIIEALHTDVRSLGDKGWGCGYRNFQMLDSEGLAQ  214 (393)
T ss_pred             HHHhcccchhhhhcccchhcccccccccchhHHHHHHHHHHh
Confidence            455678886653    23456789999999999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	443
2d1i_A	398	Structure Of Human Atg4b Length = 398		2e-46
2cy7_A	396	The Crystal Structure Of Human Atg4b Length = 396		3e-46
2z0d_A	357	The Crystal Structure Of Human Atg4b- Lc3(1-120) Co		2e-44
2zzp_A	357	The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-1		2e-44
2p82_A	355	Cysteine Protease Atg4a Length = 355		3e-44

>pdb|2D1I|A Chain A, Structure Of Human Atg4b Length = 398

Iteration: 1
 Score =  182 bits (463), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 159/330 (48%), Gaps = 25/330 (7%)
Query: 100 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPF 159
           D +SR+  +YRK F  IG +  TSD GWGCMLR  QM+ AQAL+   LGR WR   +K  
Sbjct: 50  DVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQ 109
Query: 160 DREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETG 219
              Y  +L+ F D + S +SIH + Q G   G + G W GP  + +  + LA      + 
Sbjct: 110 PDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSS- 168
Query: 220 LGCQSLPMAIYV-----VSGDEDGERGGAPVVCID------DASRHCSVFSKGQ------ 262
                  +A+++     V  +E        V C        D+ RHC+ F  G       
Sbjct: 169 -------LAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRP 221
Query: 263 ADWTPIXXXXXXXXXXEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIY 322
           + W P+            +N  Y+ TL+  F  PQSLG++GGKP ++ Y +G   E  IY
Sbjct: 222 SPWRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIY 281
Query: 323 LDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARA 382
           LDPH  QP +         D S +       + +  +DPS+A+GF+C+ +DDF+D+C + 
Sbjct: 282 LDPHTTQPAVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQV 341
Query: 383 SKLAEESNGAPLFTVTQTHKKPVNHSDVLG 412
            KL+      P+F + +     +   DVL 
Sbjct: 342 KKLSLLGGALPMFELVEQQPSHLACPDVLN 371

>pdb|2CY7|A Chain A, The Crystal Structure Of Human Atg4b Length = 396

Iteration: 1
 Score =  182 bits (463), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 159/330 (48%), Gaps = 25/330 (7%)
Query: 100 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPF 159
           D +SR+  +YRK F  IG +  TSD GWGCMLR  QM+ AQAL+   LGR WR   +K  
Sbjct: 48  DVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQ 107
Query: 160 DREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETG 219
              Y  +L+ F D + S +SIH + Q G   G + G W GP  + +  + LA      + 
Sbjct: 108 PDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSS- 166
Query: 220 LGCQSLPMAIYV-----VSGDEDGERGGAPVVCID------DASRHCSVFSKGQ------ 262
                  +A+++     V  +E        V C        D+ RHC+ F  G       
Sbjct: 167 -------LAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRP 219
Query: 263 ADWTPIXXXXXXXXXXEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIY 322
           + W P+            +N  Y+ TL+  F  PQSLG++GGKP ++ Y +G   E  IY
Sbjct: 220 SPWRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIY 279
Query: 323 LDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARA 382
           LDPH  QP +         D S +       + +  +DPS+A+GF+C+ +DDF+D+C + 
Sbjct: 280 LDPHTTQPAVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQV 339
Query: 383 SKLAEESNGAPLFTVTQTHKKPVNHSDVLG 412
            KL+      P+F + +     +   DVL 
Sbjct: 340 KKLSLLGGALPMFELVEQQPSHLACPDVLN 369

>pdb|2Z0D|A Chain A, The Crystal Structure Of Human Atg4b- Lc3(1-120) Complex Length = 357

Iteration: 1
 Score =  176 bits (447), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 154/317 (48%), Gaps = 25/317 (7%)
Query: 100 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPF 159
           D +SR+  +YRK F  IG +  TSD GWGCMLR  QM+ AQAL+   LGR WR   +K  
Sbjct: 48  DVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQ 107
Query: 160 DREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETG 219
              Y  +L+ F D + S +SIH + Q G   G + G W GP  + +  + LA      + 
Sbjct: 108 PDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSS- 166
Query: 220 LGCQSLPMAIYV-----VSGDEDGERGGAPVVCID------DASRHCSVFSKGQ------ 262
                  +A+++     V  +E        V C        D+ RHC+ F  G       
Sbjct: 167 -------LAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRP 219
Query: 263 ADWTPIXXXXXXXXXXEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIY 322
           + W P+            +N  Y+ TL+  F  PQSLG++GGKP ++ Y +G   E  IY
Sbjct: 220 SPWRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIY 279
Query: 323 LDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARA 382
           LDP   QP +         D S +       + +  +DPS+A+GF+C+ +DDF+D+C + 
Sbjct: 280 LDPATTQPAVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQV 339
Query: 383 SKLAEESNGAPLFTVTQ 399
            KL+      P+F + +
Sbjct: 340 KKLSLLGGALPMFELVE 356

>pdb|2ZZP|A Chain A, The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-124) Complex Length = 357

Iteration: 1
 Score =  176 bits (447), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 154/317 (48%), Gaps = 25/317 (7%)
Query: 100 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPF 159
           D +SR+  +YRK F  IG +  TSD GWG MLR  QM+ AQAL+   LGR WR   +K  
Sbjct: 48  DVASRLWFTYRKNFPAIGGTGPTSDTGWGSMLRCGQMIFAQALVCRHLGRDWRWTQRKRQ 107
Query: 160 DREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETG 219
              Y  +L+ F D + S +SIH + Q G   G + G W GP  + +  + LA      + 
Sbjct: 108 PDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSS- 166
Query: 220 LGCQSLPMAIYV-----VSGDEDGERGGAPVVCID------DASRHCSVFSKGQ------ 262
                  +A+++     V  +E        V C        D+ RHC+ F  G       
Sbjct: 167 -------LAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRP 219
Query: 263 ADWTPIXXXXXXXXXXEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIY 322
           + W P+            +N  Y+ TL+  F  PQSLG++GGKP ++ Y +G   E  IY
Sbjct: 220 SPWRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIY 279
Query: 323 LDPHDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARA 382
           LDPH  QP +         D S +       + +  +DPS+A+GF+C+ +DDF+D+C + 
Sbjct: 280 LDPHTTQPAVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQV 339
Query: 383 SKLAEESNGAPLFTVTQ 399
            KL+      P+F + +
Sbjct: 340 KKLSLLGGALPMFELVE 356

>pdb|2P82|A Chain A, Cysteine Protease Atg4a Length = 355

Iteration: 1
 Score =  176 bits (445), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 158/316 (50%), Gaps = 22/316 (6%)
Query: 100 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPF 159
           D S+R+  +YR+ F PIG +  +SD GWGCMLR  QM++AQAL+   LGR W    QK  
Sbjct: 44  DISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWSWEKQKEQ 103
Query: 160 DREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP---------YAMCRSWEAL 210
            +EY  IL  F D +   +SIH + Q G   G + G W GP          A+   W +L
Sbjct: 104 PKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNSL 163
Query: 211 ARCQRAETGLGCQSLPMAIYV--VSGDEDGERGGAPVVCIDDA---SRHCSVFSKGQADW 265
           A     +  +  + +     V  +S D  G+R    +   + +   S +CS        W
Sbjct: 164 AVYVSMDNTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSA-------W 216
Query: 266 TPIXXXXXXXXXXEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDP 325
            P+           ++NP Y+   +  F  PQSLG +GGKP  + Y +G   +  I+LDP
Sbjct: 217 KPLLLIVPLRLGINQINPVYVDAFKECFKMPQSLGALGGKPNNAYYFIGFLGDELIFLDP 276
Query: 326 HDVQPVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKL 385
           H  Q  ++  ++    D + +     + +++ ++DPS+A+GF+C+++ DFD++C+   K 
Sbjct: 277 HTTQTFVDTEENGTVNDQTFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWCSLVQKE 336
Query: 386 AEESNGAPLFTVTQTH 401
             + N   +F + Q H
Sbjct: 337 ILKEN-LRMFELVQKH 351
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	443
2cy7_A	396	Cysteine protease APG4B; papain-like fold, autopha	1e-110
2p82_A	355	Cysteine protease ATG4A; autophagy, hydrolase, pro	1e-106

>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A Length = 396

 Score =  328 bits (842), Expect = e-110
 Identities = 117/390 (30%), Positives = 187/390 (47%), Gaps = 26/390 (6%)

Query: 63  ISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKIT 122
              ++  +W+LG  + I  ++            E   D +SR+  +YRK F  IG +  T
Sbjct: 22  FPETSEPVWILGRKYSIFTEKD-----------EILSDVASRLWFTYRKNFPAIGGTGPT 70

Query: 123 SDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHN 182
           SD GWGCMLR  QM+ AQAL+   LGR WR   +K     Y  +L+ F D + S +SIH 
Sbjct: 71  SDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQ 130

Query: 183 LLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIY---VVSGDEDGE 239
           + Q G   G + G W GP  + +  + LA      +     ++   +    +        
Sbjct: 131 IAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSV 190

Query: 240 RGGAPVVCIDDASRHCSVFSKGQ------ADWTPILLLVPLVLGLEKVNPRYIPTLRLTF 293
                     D+ RHC+ F  G       + W P++LL+PL LGL  +N  Y+ TL+  F
Sbjct: 191 PCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYVETLKHCF 250

Query: 294 TFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRH 353
             PQSLG++GGKP ++ Y +G   E  IYLDPH  QP +         D S +       
Sbjct: 251 MMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFHCQHPPCR 310

Query: 354 IHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGE 413
           + +  +DPS+A+GF+C+ +DDF+D+C +  KL+      P+F + +     +   DVL  
Sbjct: 311 MSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPSHLACPDVLNL 370

Query: 414 TGGVPEDDSLGVMSMNDAVGNAHEDDWQLL 443
           +    + + L     ++      ++D+++L
Sbjct: 371 SLDSSDVERLERFFDSE------DEDFEIL 394

>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22 Length = 355

 Score =  316 bits (811), Expect = e-106
 Identities = 105/346 (30%), Positives = 172/346 (49%), Gaps = 23/346 (6%)

Query: 65  SSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSD 124
            +   +W+LG  H +  +++           +   D S+R+  +YR+ F PIG +  +SD
Sbjct: 20  DTDELVWILGKQHLLKTEKS-----------KLLSDISARLWFTYRRKFSPIGGTGPSSD 68

Query: 125 VGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLL 184
            GWGCMLR  QM++AQAL+   LGR W    QK   +EY  IL  F D +   +SIH + 
Sbjct: 69  AGWGCMLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMA 128

Query: 185 QAGKAYGLAAGSWVGPYAMCRSWEALARCQ---------RAETGLGCQSLPMAIYVVSGD 235
           Q G   G + G W GP  + +  + LA              +  +  + +     V+   
Sbjct: 129 QMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRVLPLS 188

Query: 236 EDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTF 295
            D      P      AS      S   + W P+LL+VPL LG+ ++NP Y+   +  F  
Sbjct: 189 ADTAGDRPP--DSLTASNQSKGTSAYCSAWKPLLLIVPLRLGINQINPVYVDAFKECFKM 246

Query: 296 PQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIH 355
           PQSLG +GGKP  + Y +G   +  I+LDPH  Q  ++  ++    D + +     + ++
Sbjct: 247 PQSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTEENGTVNDQTFHCLQSPQRMN 306

Query: 356 LDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTH 401
           + ++DPS+A+GF+C+++ DFD++C+   K   + N   +F + Q H
Sbjct: 307 ILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKEN-LRMFELVQKH 351

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	443
2cy7_A	396	Cysteine protease APG4B; papain-like fold, autopha	100.0
2p82_A	355	Cysteine protease ATG4A; autophagy, hydrolase, pro	100.0
3oqc_A	481	UFSP2, UFM1-specific protease 2; DPH motif Cys pro	98.0
2z84_A	218	UFSP1, UFM1-specific protease 1; alpha/beta, papai	97.88

>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A

Probab=100.00  E-value=1.3e-114  Score=889.58  Aligned_cols=329  Identities=34%  Similarity=0.676  Sum_probs=283.4

Q ss_pred             CCCCCCCCCCcEEEeCceecCCccccccccCCCcchHHHHHhccccEEEeecCCCccCCCCcccccCCcceeccchhHHH
Q 013448           59 SRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLV  138 (443)
Q Consensus        59 ~~~~~~~~~~~vwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~df~SriWfTYR~~F~pI~~s~~TSD~GWGCMLRsgQMLL  138 (443)
                      +..++|.+++||||||++|+..++           .++|++||+||||||||+|||||+++++|||+|||||||||||||
T Consensus        18 ~~~~~~~~~~pv~iLG~~y~~~~~-----------~~~fl~d~~SriWfTYR~~F~~I~~s~~TSD~GWGCMlRsgQMlL   86 (396)
T 2cy7_A           18 EFEDFPETSEPVWILGRKYSIFTE-----------KDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIF   86 (396)
T ss_dssp             CCCCCCCCSSCEEETTEEECTTTC-----------HHHHHHHHHHSBCCCEEESCCCTTTTSCSBCTTTCHHHHHHHHHH
T ss_pred             ccccCCCCCCcEEEeCcEecCCcC-----------HHHHHHHhhhcEEEEccCCCcccCCCCCCCCCCccceeeccHHHH
Confidence            457899999999999999998654           579999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCcCCCCCCCcHHHHHHhhhcCCCCCCCchhhHHHHHHHHcCCCCccccCchHHHHHHHHHHHHHhhhc
Q 013448          139 AQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAET  218 (443)
Q Consensus       139 AqAL~~~~LGrdwr~~~~~~~~~~~~~IL~lF~D~~~apFSIH~iv~~G~~~gk~pGeWfGPs~~a~~i~~L~~~~~~~~  218 (443)
                      ||||++|||||+|||.+.+..+++|.+||+||+|+|+|||||||||++|.++||+||+||||+++|++|++|+..     
T Consensus        87 AqaL~~~~LGrdwr~~~~~~~~~~~~~Il~~F~D~~~apFSIH~iv~~G~~~gk~~GeWfGPs~va~~lk~L~~~-----  161 (396)
T 2cy7_A           87 AQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVF-----  161 (396)
T ss_dssp             HHHHHHHHTCTTCCCCTTSCCCHHHHHHHHTTSSSTTSTTCHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHhcccccccccccCcHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCcccccCHHHHHHHHHHHhhc-----
Confidence            999999999999999877767778999999999999999999999999999999999999999999999999752     


Q ss_pred             cCCCCCCCeEEEEeeCCCCCCCCCCceeecccccccccc--------------------ccC------CCCCCccEEEEE
Q 013448          219 GLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSV--------------------FSK------GQADWTPILLLV  272 (443)
Q Consensus       219 ~~~~~~~~l~v~v~s~~~dge~~~~~vv~~dd~~~~c~~--------------------~~~------~~~~w~plLlLI  272 (443)
                         ..+..++|||++++         +|+.+|+.+.|..                    ++.      ....|+|+||||
T Consensus       162 ---~~~~~l~v~va~D~---------~v~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~plLlli  229 (396)
T 2cy7_A          162 ---DTWSSLAVHIAMDN---------TVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLI  229 (396)
T ss_dssp             ---CTTTCCEEEECCTT---------EEEHHHHHHHHBSSCCC---------------------------CCBCCEEEEE
T ss_pred             ---ccccCceEEEecCC---------ceeHHHHHHHhhcccccccccccccccccccccccccccccccccCCcceEEEE
Confidence               23446899998753         6777887666542                    111      124699999999


Q ss_pred             eeeecCCCCCcchHHHHHHhhCCCceeEEecCCCCceEEEEEEecCceEeeCCCCcccccccCCCCCCCCCCccccCC-c
Q 013448          273 PLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDV-I  351 (443)
Q Consensus       273 PlRLGld~iNp~Y~~~Lk~~f~lpqsvGIiGGkP~~S~YFvG~q~d~LiYLDPH~~Q~av~~~~~~~~~~~~SyHc~~-~  351 (443)
                      |+|||+|+|||+|+++||++|++|||+|||||||++|+||||+|+++|||||||+||+|++...... ...+||||.. +
T Consensus       230 plRLGld~iNp~Y~~~Lk~~l~~pqsvGIiGGkP~~s~YfvG~q~d~liYLDPH~~Q~a~~~~~~~~-~~~~s~hc~~~~  308 (396)
T 2cy7_A          230 PLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCF-IPDESFHCQHPP  308 (396)
T ss_dssp             EEECCSSSCCGGGHHHHHHHTSSTTEEEEEECSTTCCEEEEEEETTEEEEECCCSEEECCC---CCC-CCCGGGBCCSCC
T ss_pred             EEeecCCcCCHHHHHHHHHHhCCcccceEecCccCceEEEEEEeCCEEEeeCCCccccccccccccc-CCCcceeecCcc
Confidence            9999999999999999999999999999999999999999999999999999999999998654332 2457999997 5


Q ss_pred             ccccccccCCccEEEEEeCChhhHHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCcCCCCCC
Q 013448          352 RHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETGG  416 (443)
Q Consensus       352 r~m~i~~lDPSmalGFyc~~~~Df~df~~~i~~l~~~~~~~pLF~v~~~~p~~~~~~d~~~~~~~  416 (443)
                      ++|++++|||||+|||||+|++||++||++++++....+++|||+|++++|+++.++|++....+
T Consensus       309 ~~m~~~~mDPS~~lGFyc~~~~Df~d~~~~~~~~~~~~~~~plF~v~~~~p~~~~~~~~~~~~~~  373 (396)
T 2cy7_A          309 CRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPSHLACPDVLNLSLD  373 (396)
T ss_dssp             EEEEGGGSCSEEEEEEEESSHHHHHHHHHHHHHHHHC----CCSEEESCCC------CCCCCCCC
T ss_pred             cccchhhcCCceEEEEEECCHHHHHHHHHHHHHHhccCCCCceEEeeccCCCcCCCCccccCCCc
Confidence            89999999999999999999999999999999998777789999999999999988887765553

>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22

Probab=100.00  E-value=4.9e-114  Score=875.19  Aligned_cols=316  Identities=34%  Similarity=0.682  Sum_probs=283.0

Q ss_pred             CCCCCCCCCcEEEeCceecCCccccccccCCCcchHHHHHhccccEEEeecCCCccCCCCcccccCCcceeccchhHHHH
Q 013448           60 RTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVA  139 (443)
Q Consensus        60 ~~~~~~~~~~vwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~df~SriWfTYR~~F~pI~~s~~TSD~GWGCMLRsgQMLLA  139 (443)
                      +++++.+++||||||++|+..++           .++|++||+||||||||+|||||+++++|||+||||||||||||||
T Consensus        15 ~~~~~~~~~pv~iLG~~y~~~~~-----------~~~fl~d~~SriWfTYR~~F~~I~~s~~TSD~GWGCMlRsgQMlLA   83 (355)
T 2p82_A           15 YFQGPDTDELVWILGKQHLLKTE-----------KSKLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLA   83 (355)
T ss_dssp             -------CCEEEETTEEEETTTT-----------HHHHHHHHHTSBCCCEEESSCCTTTTSCSCCTTTCHHHHHHHHHHH
T ss_pred             ccccCCCCCeEEEecceecCCcC-----------HHHHHHHhhhcEEEEecCCCccCCCCCccCCCccceeeehhHHHHH
Confidence            45677899999999999998754           6899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCcCCCCCCCcHHHHHHhhhcCCCCCCCchhhHHHHHHHHcCCCCccccCchHHHHHHHHHHHHHhhhcc
Q 013448          140 QALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETG  219 (443)
Q Consensus       140 qAL~~~~LGrdwr~~~~~~~~~~~~~IL~lF~D~~~apFSIH~iv~~G~~~gk~pGeWfGPs~~a~~i~~L~~~~~~~~~  219 (443)
                      |||++|+|||+|||...+..+++|.+||+||+|+|+|||||||||++|.++||+|||||||+++|++|++|++.      
T Consensus        84 qaL~~~~LGr~wr~~~~~~~~~~~~~Il~~F~D~~~apfSIH~iv~~g~~~gk~~GeWfGPs~va~~lk~L~~~------  157 (355)
T 2p82_A           84 QALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALF------  157 (355)
T ss_dssp             HHHHHHHTCTTCCTTSCSSCCHHHHHHHHTTSSSTTSTTSHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTT------
T ss_pred             HHHHHHhcCccccccccccccHHHHHHHHhcCCCCCCCccHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhc------
Confidence            99999999999999877777789999999999999999999999999999999999999999999999999863      


Q ss_pred             CCCCCCCeEEEEeeCCCCCCCCCCceeeccccccccccccC------------------------CCCCCccEEEEEeee
Q 013448          220 LGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSK------------------------GQADWTPILLLVPLV  275 (443)
Q Consensus       220 ~~~~~~~l~v~v~s~~~dge~~~~~vv~~dd~~~~c~~~~~------------------------~~~~w~plLlLIPlR  275 (443)
                        .++.+++|||+++         .+++++|+.+.|.....                        ....|+|||||||+|
T Consensus       158 --~~~~~l~v~va~D---------~~v~~~di~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plLlliplR  226 (355)
T 2p82_A          158 --DEWNSLAVYVSMD---------NTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSAWKPLLLIVPLR  226 (355)
T ss_dssp             --CTTTCCEEEECBT---------TEEEHHHHHHHHEECCSCC----------------------CCCEECCEEEEEEEE
T ss_pred             --ccccCceEEEecC---------CcEeHHHHHHHhhcccccccccccccccccccccccccccccccCCceEEEEEEee
Confidence              2345789999875         37888998887753211                        012699999999999


Q ss_pred             ecCCCCCcchHHHHHHhhCCCceeEEecCCCCceEEEEEEecCceEeeCCCCcccccccCCCCCCCCCCccccCC-cccc
Q 013448          276 LGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDV-IRHI  354 (443)
Q Consensus       276 LGld~iNp~Y~~~Lk~~f~lpqsvGIiGGkP~~S~YFvG~q~d~LiYLDPH~~Q~av~~~~~~~~~~~~SyHc~~-~r~m  354 (443)
                      ||+|+|||+|+++||++|++|||+|||||||++|+||||+|+|+|||||||+||+|++..+... .+.+||||+. +++|
T Consensus       227 LGld~in~~Y~~~Lk~~l~~pqsvGIiGGkP~~s~YfvG~q~d~l~YLDPH~~Q~a~~~~~~~~-~~~~sfhc~~~~~~m  305 (355)
T 2p82_A          227 LGINQINPVYVDAFKECFKMPQSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTEENGT-VNDQTFHCLQSPQRM  305 (355)
T ss_dssp             CCSSSCCGGGHHHHHHHHHSTTEEEEEEEETTEEEEEEEEETTEEEEECCCSEEECCCBCTTSC-BCCGGGBCCSSCEEE
T ss_pred             cCCCcCCHHHHHHHHHHhCccccceEecCCCCceEEEEEEcCCEEEEeCCCCCcccccccccCc-CCCCceeeCCCcCcC
Confidence            9999999999999999999999999999999999999999999999999999999998765433 2468999999 9999


Q ss_pred             cccccCCccEEEEEeCChhhHHHHHHHHHHHHhhcCCCCcEEEecCCCCCC
Q 013448          355 HLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPV  405 (443)
Q Consensus       355 ~i~~lDPSmalGFyc~~~~Df~df~~~i~~l~~~~~~~pLF~v~~~~p~~~  405 (443)
                      ++++|||||+|||||+|++||++||+++++++.. .++|||||++++|+++
T Consensus       306 ~~~~lDPS~~lGF~c~~~~df~d~~~~i~~~~~~-~~~plF~v~~~~p~~~  355 (355)
T 2p82_A          306 NILNLDPSVALGFFCKEEKDFDNWCSLVQKEILK-ENLRMFELVQKHPSHW  355 (355)
T ss_dssp             EGGGSCSEEEEEEEESSHHHHHHHHHHHHHHTTT-SSSCSSEEESSCCCCC
T ss_pred             chhhcCcceEEEEEECCHHHHHHHHHHHHHHhcc-CCCCcEEEeccCCCCC
Confidence            9999999999999999999999999999998877 8899999999999864

>3oqc_A UFSP2, UFM1-specific protease 2; DPH motif Cys protease, hydrolase; 2.60A {Mus musculus}

Probab=98.00  E-value=3.4e-05  Score=80.08  Aligned_cols=46  Identities=26%  Similarity=0.225  Sum_probs=33.2

Q ss_pred             hHHHHHHhhCCCceeEEecCCCCceEEEEEEecC------ceEeeCCCCcccc
Q 013448          285 YIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEE------SAIYLDPHDVQPV  331 (443)
Q Consensus       285 Y~~~Lk~~f~lpqsvGIiGGkP~~S~YFvG~q~d------~LiYLDPH~~Q~a  331 (443)
                      ....|.+-|+-..+-=|+|| ..+|+=++|+.-+      +|+.|||||+-+.
T Consensus       394 l~~~L~~hF~~~GtPImiGG-~~~S~TIlGVe~~~~tG~~~lLIlDPHytg~~  445 (481)
T 3oqc_A          394 QGRELANHFQNVGTPVMVGG-GVLAHTILGVAWNETTGQIKFLILDPHYTGAE  445 (481)
T ss_dssp             GHHHHHHHHTTTCCCEEEEE-TTEEEEEEEEEECTTTCCEEEEEECTTCCSCS
T ss_pred             HHHHHHHHHhccCCCEEecC-CCCCceEEEEEEecCCCeEEEEEECCCCCChH
Confidence            34567777765444556666 6799999999732      5789999998744

>2z84_A UFSP1, UFM1-specific protease 1; alpha/beta, papain like fold, hydrolase, thiol protease, UBL conjugation pathway; 1.70A {Mus musculus}

Probab=97.88  E-value=5.2e-05  Score=72.20  Aligned_cols=27  Identities=30%  Similarity=0.443  Sum_probs=22.7

Q ss_pred             cCCCCceEEEEEEec-----CceEeeCCCCcc
Q 013448          303 GGKPGASTYIVGVQE-----ESAIYLDPHDVQ  329 (443)
Q Consensus       303 GGkP~~S~YFvG~q~-----d~LiYLDPH~~Q  329 (443)
                      ||...||.=+||+..     -+|+.||||++-
T Consensus       144 G~~~ghS~tIvGve~~~~g~~~lLIlDPhy~~  175 (218)
T 2z84_A          144 GDADAQSKALLGICEGPGSEVYVLILDPHYWG  175 (218)
T ss_dssp             CTTTSCCEEEEEEEECTTCCEEEEEECCCCCS
T ss_pred             CCcccccceEEeEEecCCCcEEEEEECCCcCC
Confidence            577899999999962     269999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	443
d2z0da1	350	d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human	1e-129
d2p82a1	334	d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human	1e-122

>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  375 bits (963), Expect = e-129
 Identities = 112/349 (32%), Positives = 173/349 (49%), Gaps = 26/349 (7%)

Query: 63  ISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKIT 122
              ++  +W+LG  + I  ++            E   D +SR+  +YRK F  IG +  T
Sbjct: 15  FPETSEPVWILGRKYSIFTEKD-----------EILSDVASRLWFTYRKNFPAIGGTGPT 63

Query: 123 SDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHN 182
           SD GWGCMLR  QM+ AQAL+   LGR WR   +K     Y  +L+ F D + S +SIH 
Sbjct: 64  SDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQ 123

Query: 183 LLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGG 242
           + Q G   G + G W GP  + +  + LA      +     ++   + +   +E      
Sbjct: 124 IAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVM---EEIRRLCR 180

Query: 243 APVVCID------DASRHCSVF------SKGQADWTPILLLVPLVLGLEKVNPRYIPTLR 290
             V C        D+ RHC+ F      +   + W P++LL+PL LGL  +N  Y+ TL+
Sbjct: 181 TSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYVETLK 240

Query: 291 LTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDV 350
             F  PQSLG++GGKP ++ Y +G   E  IYLDP   QP +         D S +    
Sbjct: 241 HCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPATTQPAVEPTDGCFIPDESFHCQHP 300

Query: 351 IRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQ 399
              + +  +DPS+A+GF+C+ +DDF+D+C +  KL+      P+F + +
Sbjct: 301 PCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVE 349

>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo sapiens) [TaxId: 9606]} Length = 334

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  355 bits (913), Expect = e-122
 Identities = 105/346 (30%), Positives = 171/346 (49%), Gaps = 29/346 (8%)

Query: 68  SDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGW 127
             +W+LG  H +  +++           +   D S+R+  +YR+ F PIG +  +SD GW
Sbjct: 2   ELVWILGKQHLLKTEKS-----------KLLSDISARLWFTYRRKFSPIGGTGPSSDAGW 50

Query: 128 GCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG 187
           GCMLR  QM++AQAL+   LGR W    QK   +EY  IL  F D +   +SIH + Q G
Sbjct: 51  GCMLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMG 110

Query: 188 KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGC------------QSLPMAIYVVSGD 235
              G + G W GP  + +  + LA        L                    +  +S D
Sbjct: 111 VGEGKSIGEWFGPNTVAQVLKKLALFDEWN-SLAVYVSMDNTVVIEDIKKMCRVLPLSAD 169

Query: 236 EDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTF 295
             G+R    +   +         S   + W P+LL+VPL LG+ ++NP Y+   +  F  
Sbjct: 170 TAGDRPPDSLTASNQ----SKGTSAYCSAWKPLLLIVPLRLGINQINPVYVDAFKECFKM 225

Query: 296 PQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDVIRHIH 355
           PQSLG +GGKP  + Y +G   +  I+LDPH  Q  ++  ++    D + +     + ++
Sbjct: 226 PQSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTEENGTVNDQTFHCLQSPQRMN 285

Query: 356 LDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTH 401
           + ++DPS+A+GF+C+++ DFD++C+   K   + N   +F + Q H
Sbjct: 286 ILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKEN-LRMFELVQKH 330

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	443
d2z0da1	350	Cysteine protease ATG4B {Human (Homo sapiens) [Tax	100.0
d2p82a1	334	Cysteine protease ATG4A {Human (Homo sapiens) [Tax	100.0

>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-111  Score=851.45  Aligned_cols=313  Identities=34%  Similarity=0.690  Sum_probs=275.4

Q ss_pred             CCCCCCCCCCcEEEeCceecCCccccccccCCCcchHHHHHhccccEEEeecCCCccCCCCcccccCCcceeccchhHHH
Q 013448           59 SRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLV  138 (443)
Q Consensus        59 ~~~~~~~~~~~vwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~df~SriWfTYR~~F~pI~~s~~TSD~GWGCMLRsgQMLL  138 (443)
                      +..+++.+++||||||++|...++           .++|++||+||||||||+|||||+++++|||+|||||||||||||
T Consensus        11 ~~~~~~~~~~pv~iLG~~y~~~~~-----------~~~fl~d~~s~iwfTYR~~F~~i~~s~~TSD~GWGCMlRsgQMlL   79 (350)
T d2z0da1          11 EFEDFPETSEPVWILGRKYSIFTE-----------KDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIF   79 (350)
T ss_dssp             GGCCCCSSCCCEEETTEEECTTTC-----------HHHHHHHHHHSCCCCEEESCCCGGGTSCSBCTTTCHHHHHHHHHH
T ss_pred             chhhCCCCCCCEEEeceeecCCcC-----------HHHHHHHhhheEEEEccCCCcCCCCCCCcCCCchhHHHHHHHHHH
Confidence            456888899999999999998754           579999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCcCCCCCCCcHHHHHHhhhcCCCCCCCchhhHHHHHHHHcCCCCccccCchHHHHHHHHHHHHHhhhc
Q 013448          139 AQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAET  218 (443)
Q Consensus       139 AqAL~~~~LGrdwr~~~~~~~~~~~~~IL~lF~D~~~apFSIH~iv~~G~~~gk~pGeWfGPs~~a~~i~~L~~~~~~~~  218 (443)
                      ||||++|||||+|||...+..+++|.+||+||.|.|+|||||||||++|.++||+||+||||+++|++|++|++..    
T Consensus        80 A~aL~~~~lgr~wr~~~~~~~~~~~~~Il~~F~D~~~apfSIH~iv~~g~~~gk~~GeWfGPs~~a~~ik~L~~~~----  155 (350)
T d2z0da1          80 AQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD----  155 (350)
T ss_dssp             HHHHHHHHTCTTCCCCTTSCCCHHHHHHHHTTSSSTTSTTCHHHHHHHHHHTTCCTTCCBCHHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHhcCCcccccccccCcHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCccccCHHHHHHHHHHHHhhc----
Confidence            9999999999999999877778889999999999999999999999999999999999999999999999998742    


Q ss_pred             cCCCCCCCeEEEEeeCCCCCCCCCCceeeccccccccccc--------------------------cCCCCCCccEEEEE
Q 013448          219 GLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVF--------------------------SKGQADWTPILLLV  272 (443)
Q Consensus       219 ~~~~~~~~l~v~v~s~~~dge~~~~~vv~~dd~~~~c~~~--------------------------~~~~~~w~plLlLI  272 (443)
                          +...++|||++++         ++|++|+.++|...                          .....+|+|+||||
T Consensus       156 ----~~~~l~v~va~d~---------~v~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~llli  222 (350)
T d2z0da1         156 ----TWSSLAVHIAMDN---------TVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLI  222 (350)
T ss_dssp             ----TTTCCEEEECCTT---------EEEHHHHHHHHTCC-------------------------------CCCCEEEEE
T ss_pred             ----cccCceEEEecCC---------cEehHHHHHHhcccccccccccccccccccccccccchhhcccccCCcceEEEE
Confidence                3446899998753         68888887766321                          01135799999999


Q ss_pred             eeeecCCCCCcchHHHHHHhhCCCceeEEecCCCCceEEEEEEecCceEeeCCCCcccccccCCCCCCCCCCccccCC-c
Q 013448          273 PLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDV-I  351 (443)
Q Consensus       273 PlRLGld~iNp~Y~~~Lk~~f~lpqsvGIiGGkP~~S~YFvG~q~d~LiYLDPH~~Q~av~~~~~~~~~~~~SyHc~~-~  351 (443)
                      |+|||+|+|||+|+++||++|++|||||||||||++|+||||+|+|+|||||||+||+|++....... ...||||.+ +
T Consensus       223 plRLG~d~iN~~Y~~~Lk~~~~~pqsvGIiGGrP~~a~YfvG~q~d~l~YLDPH~~Q~a~~~~~~~~~-~~~S~hc~~~~  301 (350)
T d2z0da1         223 PLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPATTQPAVEPTDGCFI-PDESFHCQHPP  301 (350)
T ss_dssp             EEECSSSSCCHHHHHHHHHTTSSTTEEEEEEEETTEEEEEEEEETTEEEEECCCSEEECCCC-----C-CCGGGSCCSSC
T ss_pred             eeecCCCcCCHHHHHHHHHHhcchhhceEecCCCCCceEEEEEcCCceEeeccccccccccccccccC-CccceecCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999987544332 457999987 5


Q ss_pred             ccccccccCCccEEEEEeCChhhHHHHHHHHHHHHhhcCCCCcEEEecC
Q 013448          352 RHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQT  400 (443)
Q Consensus       352 r~m~i~~lDPSmalGFyc~~~~Df~df~~~i~~l~~~~~~~pLF~v~~~  400 (443)
                      ++|++++|||||+|||||+|++||++||++++++....+++|||||++.
T Consensus       302 ~~~~~~~lDPSm~lGF~~~~~~d~~~~~~~i~~l~~~~~~~plFev~e~  350 (350)
T d2z0da1         302 CRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQ  350 (350)
T ss_dssp             EEEEGGGCCSEEEEEEEESSHHHHHHHHHHHHHC-----CCCSSEEECC
T ss_pred             CcCChhhcCCCeEEEEEECCHHHHHHHHHHHHHHhcccCCCCcEEEeeC
Confidence            6899999999999999999999999999999998888889999999874

>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-110  Score=840.46  Aligned_cols=309  Identities=35%  Similarity=0.706  Sum_probs=278.1

Q ss_pred             CCcEEEeCceecCCccccccccCCCcchHHHHHhccccEEEeecCCCccCCCCcccccCCcceeccchhHHHHHHHHHhh
Q 013448           67 TSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHR  146 (443)
Q Consensus        67 ~~~vwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~df~SriWfTYR~~F~pI~~s~~TSD~GWGCMLRsgQMLLAqAL~~~~  146 (443)
                      +++|||||++|+..++           .++|++||+||||||||+|||||+++++|||+|||||||||||||||||++||
T Consensus         1 d~~v~iLG~~y~~~~~-----------~~~~l~d~~s~iwfTYR~~F~~i~~s~~tSD~GWGCMlRsgQMlLA~aL~~~~   69 (334)
T d2p82a1           1 DELVWILGKQHLLKTE-----------KSKLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRH   69 (334)
T ss_dssp             CCEEEETTEEEETTTT-----------HHHHHHHHHTSBCCCEEESSCCTTTTSCSCCTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEeeeeecCccc-----------HHHHHHHhhhhEEEEccCCCcCCCCCCCcCCcChhHHHHHHHHHHHHHHHHHh
Confidence            5799999999998765           46899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcCCCCCCCcHHHHHHhhhcCCCCCCCchhhHHHHHHHHcCCCCccccCchHHHHHHHHHHHHHhhhccCCCCCCC
Q 013448          147 LGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLP  226 (443)
Q Consensus       147 LGrdwr~~~~~~~~~~~~~IL~lF~D~~~apFSIH~iv~~G~~~gk~pGeWfGPs~~a~~i~~L~~~~~~~~~~~~~~~~  226 (443)
                      |||+|||......+++|.+||+||.|+|+|||||||||++|.++||+||+||||+++|++|++|++.        .+...
T Consensus        70 lgr~wr~~~~~~~~~~~~~Il~~F~D~~~apfSIH~iv~~g~~~gk~~G~WfgPs~~a~~i~~L~~~--------~~~~~  141 (334)
T d2p82a1          70 LGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALF--------DEWNS  141 (334)
T ss_dssp             TCTTCCTTSCSSCCHHHHHHHHTTSSSTTSTTSHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTT--------CTTTC
T ss_pred             cCCccccccccCccHHHHHHHHHhcCCCCCCccHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhh--------ccccC
Confidence            9999999987777889999999999999999999999999999999999999999999999999973        23456


Q ss_pred             eEEEEeeCCCCCCCCCCceeeccccccccccc------------------------cCCCCCCccEEEEEeeeecCCCCC
Q 013448          227 MAIYVVSGDEDGERGGAPVVCIDDASRHCSVF------------------------SKGQADWTPILLLVPLVLGLEKVN  282 (443)
Q Consensus       227 l~v~v~s~~~dge~~~~~vv~~dd~~~~c~~~------------------------~~~~~~w~plLlLIPlRLGld~iN  282 (443)
                      ++|||+++         .++|.+|+.+.|...                        ......|+|+|||||+|||+|+||
T Consensus       142 l~v~v~~d---------~~v~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~llliplrLGld~iN  212 (334)
T d2p82a1         142 LAVYVSMD---------NTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSAWKPLLLIVPLRLGINQIN  212 (334)
T ss_dssp             CEEEECBT---------TEEEHHHHHHHHEECCSCC----------------------CCCEECCEEEEEEEECCSSSCC
T ss_pred             ceEEEecC---------CCEehhhHHHHhhcccccccccccccccchhhhhcccccccccccCCceEEEEeeecCCCCCC
Confidence            89999874         378888887666321                        112245899999999999999999


Q ss_pred             cchHHHHHHhhCCCceeEEecCCCCceEEEEEEecCceEeeCCCCcccccccCCCCCCCCCCccccC-CcccccccccCC
Q 013448          283 PRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSD-VIRHIHLDSIDP  361 (443)
Q Consensus       283 p~Y~~~Lk~~f~lpqsvGIiGGkP~~S~YFvG~q~d~LiYLDPH~~Q~av~~~~~~~~~~~~SyHc~-~~r~m~i~~lDP  361 (443)
                      |+|+++||++|++|||||||||||++|+||||+|+|+|||||||+||+|++.... ...+..||||. .+++|++++|||
T Consensus       213 ~~Y~~~L~~~l~lpqsvGiiGGkp~~a~YfiG~q~d~l~YLDPH~~Q~a~~~~~~-~~~~~~s~h~~~~~~~m~~~~lDP  291 (334)
T d2p82a1         213 PVYVDAFKECFKMPQSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTEEN-GTVNDQTFHCLQSPQRMNILNLDP  291 (334)
T ss_dssp             GGGHHHHHHHHHSTTEEEEEEEETTEEEEEEEEETTEEEEECCCSEEECCCBCTT-SCBCCGGGBCCSSCEEEEGGGSCS
T ss_pred             HHHHHHHHHHhCCcccceEecCCCCCceEEEEEcCCeEEeecCcccccccccccc-CCcCccceecCCccccCchhhcCC
Confidence            9999999999999999999999999999999999999999999999999876532 23456799995 589999999999


Q ss_pred             ccEEEEEeCChhhHHHHHHHHHHHHhhcCCCCcEEEecCCCCCC
Q 013448          362 SLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPV  405 (443)
Q Consensus       362 SmalGFyc~~~~Df~df~~~i~~l~~~~~~~pLF~v~~~~p~~~  405 (443)
                      ||+|||||+|++||++||++++++... ...|||+|++++|++.
T Consensus       292 S~~lgF~~~~~~d~~~~~~~i~~l~~~-~~~plF~v~~~~P~~~  334 (334)
T d2p82a1         292 SVALGFFCKEEKDFDNWCSLVQKEILK-ENLRMFELVQKHPSHW  334 (334)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHHHHTTT-SSSCSSEEESSCCCCC
T ss_pred             CeEEEEEECCHHHHHHHHHHHHHHhcC-CCCCeEEecCCCCCCC
Confidence            999999999999999999999998755 4589999999999863