Query 013449
Match_columns 443
No_of_seqs 132 out of 1254
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:58:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0065 LeuC 3-isopropylmalate 100.0 2E-147 3E-152 1106.9 41.4 415 1-442 3-423 (423)
2 TIGR02083 LEU2 3-isopropylmala 100.0 3E-144 6E-149 1110.4 44.5 415 1-441 1-419 (419)
3 TIGR01343 hacA_fam homoaconita 100.0 2E-141 5E-146 1089.4 44.1 410 2-439 1-412 (412)
4 TIGR02086 IPMI_arch 3-isopropy 100.0 7E-141 2E-145 1085.7 43.0 410 1-440 1-412 (412)
5 PRK00402 3-isopropylmalate deh 100.0 9E-141 2E-145 1086.4 43.9 414 1-442 3-418 (418)
6 PRK12466 isopropylmalate isome 100.0 8E-138 2E-142 1080.1 43.2 414 1-443 4-469 (471)
7 TIGR00170 leuC 3-isopropylmala 100.0 3E-137 6E-142 1075.0 43.3 412 1-441 3-465 (465)
8 PRK05478 isopropylmalate isome 100.0 3E-136 7E-141 1068.1 42.7 413 1-442 3-466 (466)
9 cd01583 IPMI 3-isopropylmalate 100.0 3E-133 6E-138 1022.9 40.3 380 29-435 1-382 (382)
10 TIGR00139 h_aconitase homoacon 100.0 2E-130 4E-135 1059.5 43.5 414 1-442 2-459 (712)
11 cd01585 AcnA_Bact Aconitase ca 100.0 2E-129 5E-134 991.8 40.0 377 28-435 1-380 (380)
12 TIGR01342 acon_putative aconit 100.0 8E-129 2E-133 1046.9 43.3 409 2-441 1-412 (658)
13 cd01581 AcnB Aconitate hydrata 100.0 4E-128 8E-133 995.5 40.5 394 3-435 1-436 (436)
14 PRK07229 aconitate hydratase; 100.0 1E-127 3E-132 1038.6 42.9 410 1-441 3-415 (646)
15 PF00330 Aconitase: Aconitase 100.0 3E-128 7E-133 1010.2 30.9 408 2-433 1-465 (465)
16 TIGR01340 aconitase_mito aconi 100.0 3E-125 7E-130 1026.5 43.4 408 1-435 20-472 (745)
17 cd01584 AcnA_Mitochondrial Aco 100.0 8E-125 2E-129 966.7 38.2 379 29-435 1-412 (412)
18 PRK11413 putative hydratase; P 100.0 3E-122 7E-127 999.5 40.0 406 1-442 35-486 (751)
19 cd01582 Homoaconitase Homoacon 100.0 1E-121 3E-126 927.8 37.4 351 30-435 2-363 (363)
20 PRK09238 bifunctional aconitat 100.0 1E-119 2E-124 981.0 39.6 403 1-442 371-816 (835)
21 TIGR00117 acnB aconitate hydra 100.0 6E-119 1E-123 972.4 39.3 403 1-442 372-816 (844)
22 PLN00094 aconitate hydratase 2 100.0 6E-117 1E-121 955.1 39.0 405 1-442 444-890 (938)
23 cd01351 Aconitase Aconitase ca 100.0 4E-115 8E-120 895.4 37.4 378 29-435 1-389 (389)
24 PRK09277 aconitate hydratase; 100.0 1E-114 2E-119 948.0 38.9 411 18-440 75-569 (888)
25 PRK12881 acnA aconitate hydrat 100.0 5E-114 1E-118 944.3 37.6 411 18-440 74-570 (889)
26 TIGR01341 aconitase_1 aconitat 100.0 7E-114 1E-118 940.5 35.5 412 18-441 57-560 (876)
27 PLN00070 aconitate hydratase 100.0 4E-113 9E-118 937.1 37.6 411 19-440 114-618 (936)
28 PTZ00092 aconitate hydratase-l 100.0 7E-113 2E-117 934.0 39.3 411 18-440 81-583 (898)
29 TIGR02333 2met_isocit_dHY 2-me 100.0 4E-113 8E-118 931.4 35.1 405 18-438 64-539 (858)
30 cd01586 AcnA_IRP Aconitase A c 100.0 6E-113 1E-117 870.9 32.2 366 29-435 1-404 (404)
31 COG1048 AcnA Aconitase A [Ener 100.0 4E-103 9E-108 844.1 27.5 426 2-439 34-549 (861)
32 KOG0453 Aconitase/homoaconitas 100.0 5.1E-91 1.1E-95 722.0 31.6 410 1-438 59-505 (778)
33 KOG0452 RNA-binding translatio 100.0 5.7E-85 1.2E-89 672.3 21.3 416 4-436 63-570 (892)
34 COG1049 AcnB Aconitase B [Ener 100.0 1.1E-64 2.5E-69 525.0 20.9 405 1-442 373-818 (852)
35 KOG0454 3-isopropylmalate dehy 100.0 1.6E-50 3.4E-55 407.6 5.1 431 1-434 67-498 (502)
36 KOG0454 3-isopropylmalate dehy 99.9 1.6E-24 3.5E-29 219.7 7.5 171 256-441 21-225 (502)
37 COG1679 Predicted aconitase [G 96.9 0.019 4.2E-07 59.3 14.3 298 24-384 46-358 (403)
38 PF04412 DUF521: Protein of un 95.5 0.04 8.6E-07 58.1 7.8 290 71-424 92-395 (400)
39 cd01355 AcnX Putative Aconitas 84.3 2.4 5.1E-05 44.8 6.5 296 21-384 33-347 (389)
40 cd01355 AcnX Putative Aconitas 44.7 99 0.0022 32.8 8.4 79 300-384 32-116 (389)
41 PF04412 DUF521: Protein of un 39.4 2.3E+02 0.0049 30.3 10.1 120 300-437 39-171 (400)
42 PF01456 Mucin: Mucin-like gly 29.2 24 0.00053 31.3 0.8 21 412-432 118-138 (143)
43 PRK13237 tyrosine phenol-lyase 25.6 2E+02 0.0044 31.2 7.1 49 269-317 346-394 (460)
44 COG0512 PabA Anthranilate/para 25.6 43 0.00093 32.1 1.8 16 33-49 10-25 (191)
45 KOG1481 Cysteine synthase [Ami 23.0 1.2E+02 0.0025 31.3 4.4 61 179-246 73-137 (391)
46 PF13533 Biotin_lipoyl_2: Biot 21.2 1E+02 0.0022 22.6 2.7 32 103-134 3-35 (50)
47 COG1473 AbgB Metal-dependent a 20.8 2.6E+02 0.0056 29.7 6.7 94 318-430 111-213 (392)
48 COG0129 IlvD Dihydroxyacid deh 20.2 1.3E+02 0.0029 33.5 4.5 35 179-215 55-89 (575)
No 1
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-147 Score=1106.91 Aligned_cols=415 Identities=43% Similarity=0.688 Sum_probs=401.7
Q ss_pred CCHHHHHHHhhcCCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHHHHHHH
Q 013449 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD 80 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~~~~~~ 80 (443)
|||+||||++|++++.+.|||.+.+++|++|.||.|+|++++.|++ .|. +||+|+|+++++||++|+++.+.+++++
T Consensus 3 ~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~lr~-~g~--kV~~p~k~~~~~DH~vPt~~~~~a~~~~ 79 (423)
T COG0065 3 KTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGLRE-AGR--KVRDPEKTVATFDHNVPTPDIKAAEQQK 79 (423)
T ss_pred ccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHHHH-hCC--cccCccceEEEecCCCCCccHHHHHHHH
Confidence 7999999999999998999999999999999999999999999965 774 9999999999999999999999999999
Q ss_pred HHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhcc
Q 013449 81 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT 160 (443)
Q Consensus 81 ~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~t 160 (443)
.+|+||+++||.+||+.++ +|||||+++|+|+++||++|||+||||||+|||||||+|+|+||++.+|+|
T Consensus 80 ~lr~~~ke~Gi~~~~~~g~----------~GI~H~v~pE~G~~~PG~~Iv~gDSHT~T~GAfGAfA~GiGttdva~vlat 149 (423)
T COG0065 80 ELRENAKEFGIVNFYDVGD----------QGIVHQVGPEQGLTLPGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVLAT 149 (423)
T ss_pred HHHHHHHHhCCeeeecCCC----------CcEEEEEeccccccCCCcEEEecccCcccchhhhhhhccccHHHHHHHHHh
Confidence 9999999999999998874 799999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCceeeeccC
Q 013449 161 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 240 (443)
Q Consensus 161 g~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~f~~ 240 (443)
|++||++||+++|+++|+|++|||||||||+||+++|.+|++|+++||+|+.+++|||++|||||||++|+|||+|+|+|
T Consensus 150 g~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme~RmTicNMaIE~GAkaGii~p 229 (423)
T COG0065 150 GKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGIIAP 229 (423)
T ss_pred CceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChhhhhhhhhhhhhhcccceeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhcCC--CCCccccCCCCCcccEEEEEECCCcceeeecCCCCCcccccccccC--ceeeeEEEeccCCCChH
Q 013449 241 DGTTFKYLEDKTS--LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD--VKIDRVYIGSCTGGKTE 316 (443)
Q Consensus 241 D~~t~~yl~~r~~--~~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~--~~Id~a~IGSCTng~~e 316 (443)
|++|++||+.+.. ..|+.+.+|+||+|+++++||+|+|||+||||++|+|+++++|+.+ ++|||||||||||||+|
T Consensus 230 De~T~~Y~k~~~~a~~~~~~l~sD~dA~y~~~v~~d~s~leP~Va~p~~p~nv~~v~e~~~~~i~iDqVFIGSCTNgRie 309 (423)
T COG0065 230 DETTFEYLKEWDGAVAYWKTLKSDEDAVYDKVVELDASDLEPQVAWPTNPDNVVPVSEVEPDPIKIDQVFIGSCTNGRIE 309 (423)
T ss_pred cHhHHHHHHHHhccccccceecCCCCCceeEEEEEEcccCCceeeCCCCcccceecccccCCceeeceEEEeccCCccHH
Confidence 9999999997654 7789999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhCCCccc--ccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccccCC
Q 013449 317 DFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMN 394 (443)
Q Consensus 317 Dl~~aA~iL~~~g~kv~--v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~ 394 (443)
|||+||+||| |+|++ ||++|+|+|++||+||+++| ++++|++|||.| ..||||||+|+| +|+|+
T Consensus 310 DLr~AA~Ilk--grkva~~Vr~iVvP~S~~V~~qA~~eG--------l~~if~~AG~~~-~~pgCg~CLg~~---~gvL~ 375 (423)
T COG0065 310 DLRAAAEILK--GRKVAPGVRAIVVPGSRRVKEQAEKEG--------LDKIFIEAGFEW-REPGCGPCLGMH---PGVLG 375 (423)
T ss_pred HHHHHHHHhc--cCccCCCceEEEecCcHHHHHHHHHcc--------HHHHHHhcCcEE-cCCCCccccccC---CCcCC
Confidence 9999999999 77886 99999999999999999975 699999999999 589999999994 67999
Q ss_pred CCcEEEeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCccCCccccc
Q 013449 395 EPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 442 (443)
Q Consensus 395 ~gev~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I~dp~~~~ 442 (443)
+||+|+|||||||+||||++.+++||+||+++||||++|+|+|||+++
T Consensus 376 ~gE~c~STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i~dpr~~~ 423 (423)
T COG0065 376 PGERCASTSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEIVDPRELL 423 (423)
T ss_pred CCCEEeeccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEecChhhcC
Confidence 999999999999999999999999999999999999999999999874
No 2
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=2.8e-144 Score=1110.45 Aligned_cols=415 Identities=41% Similarity=0.757 Sum_probs=401.7
Q ss_pred CCHHHHHHHhhcCCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHHHHHHH
Q 013449 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD 80 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~~~~~~ 80 (443)
|||+||||++|++++.|+|||+|++++|++|+||.|+|++++.|++ +|. .+||||+|+++++||++|+++++.+++++
T Consensus 1 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~f~~-~g~-~~V~dp~~v~~~~DH~vpa~~~~~a~~~~ 78 (419)
T TIGR02083 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAFKE-YGG-KKVFDPDRVALVPDHFTPNKDIKSAEQCK 78 (419)
T ss_pred CCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEEeccHHHHHHHHHH-cCC-CcCCCCCCEEEEeCCCCCCCCHHHHHHHH
Confidence 8999999999999988999999999999999999999999999975 773 79999999999999999999999999999
Q ss_pred HHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhcc
Q 013449 81 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT 160 (443)
Q Consensus 81 ~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~t 160 (443)
++|+|+|+|||++|||.++ +|||||+++|+||++||++|+|+||||||+||||+||||+|+||++.+|+|
T Consensus 79 ~~r~fa~~~gi~~f~d~g~----------~GI~H~v~~E~g~~~PG~~ivg~DSHT~t~Ga~Ga~a~GvG~td~a~~lat 148 (419)
T TIGR02083 79 MMREFAREQGIEKFFEIGN----------MGIEHALLPEEGIVKPGDLIIGADSHTCTYGALGAFATGVGSTDMAVGMAT 148 (419)
T ss_pred HHHHHHHHcCCcceecCCC----------cceeeeeccccCccCCCeEEEecCCCccccCccceeEEccChHHHHHHHhc
Confidence 9999999999998888752 599999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCceeeeccC
Q 013449 161 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 240 (443)
Q Consensus 161 g~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~f~~ 240 (443)
|++||+|||||+|+|+|+|++||++|||+|+|+++|+.+|++||+|||+|+++++||+++|||||||++|+||+++||||
T Consensus 149 g~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~~R~Tl~NMa~E~GA~~~i~~~ 228 (419)
T TIGR02083 149 GKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMDDRFTIANMAIEAGAKTGIFPV 228 (419)
T ss_pred CCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHHHHhhhhhcccccCceeeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhcCCCCCccccCCCCCcccEEEEEECCCcceeeecCCCCCccccccccc--CceeeeEEEeccCCCChHHH
Q 013449 241 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECK--DVKIDRVYIGSCTGGKTEDF 318 (443)
Q Consensus 241 D~~t~~yl~~r~~~~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~--~~~Id~a~IGSCTng~~eDl 318 (443)
|++|++||+.|+.++|+.+.+|+||.|+++++||||+|||+||+|++|+|++|++|++ +++|||||||||||||+|||
T Consensus 229 D~~t~~yL~~r~~~~~~~~~~D~dA~Y~~~~~iDls~leP~va~P~~pdnv~~v~e~~~~g~~id~v~IGSCTngr~eDl 308 (419)
T TIGR02083 229 DEITIEYEKGRGKREEKIYKADEDAKYVRVIEIDLSELEPQVAFPHLPENTKDISEAGKEEIKIDQVVIGSCTNGRLEDL 308 (419)
T ss_pred ChHHHHHHhhCCccchhcccCCCCCCEEEEEEEEccccceeecCCCCcccCcChhhcccccCccCeEEEEcCCCCChHHH
Confidence 9999999999988889999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHhCCCccc--ccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccccCCCC
Q 013449 319 LAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEP 396 (443)
Q Consensus 319 ~~aA~iL~~~g~kv~--v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~g 396 (443)
++||+||| |+|++ ||++|+|+|++||.+|+++| ++++|.+|||.| .+||||+|+|++ +|.+++|
T Consensus 309 ~~AA~iLk--G~kv~~~vr~~v~P~S~~v~~~a~~~G--------~~~~l~~aGa~i-~~pgCg~C~G~~---~g~l~~g 374 (419)
T TIGR02083 309 RLAAEILK--GKTVAPDVRCIIIPGSQNVYLEAMKEG--------LLEIFIEAGAVV-STPTCGPCLGGH---MGILAEG 374 (419)
T ss_pred HHHHHHHc--CCCCCCCccEEEeCCCHHHHHHHHHCC--------cHHHHHHcCCEE-cCCccccccCcC---CCcCCCC
Confidence 99999998 77886 99999999999999999975 699999999999 699999999984 5689999
Q ss_pred cEEEeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCccCCcccc
Q 013449 397 MVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 441 (443)
Q Consensus 397 ev~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I~dp~~~ 441 (443)
|+||||+||||+||||++++++|||||+|||||||+|+|+|||++
T Consensus 375 e~~vsT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~itdpr~~ 419 (419)
T TIGR02083 375 ERAISTTNRNFVGRMGHPKSEVYLASPAVAAASAIKGYIASPEEV 419 (419)
T ss_pred CEEEEecCCCCCccCCCCCCeEEECCHHHHHHHHhCCCcCCcccC
Confidence 999999999999999998999999999999999999999999985
No 3
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=2.2e-141 Score=1089.35 Aligned_cols=410 Identities=43% Similarity=0.767 Sum_probs=397.1
Q ss_pred CHHHHHHHhhcCCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHHHHHHHH
Q 013449 2 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDI 81 (443)
Q Consensus 2 Tl~EKIl~~~~~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~~~~~~~ 81 (443)
||+||||++|+++ .++|||++++++|++|+||.|+|++++.|++ +|. .+||||+|+++++||++|+++.+.++++++
T Consensus 1 Tl~eKIl~~h~~~-~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~~-~g~-~~v~~P~~v~~~~DH~~p~~~~~~a~~~~~ 77 (412)
T TIGR01343 1 TIAEKILSKHSGK-EVYAGDLIVAEIDQAMVHDITAPLAIRRLEE-YGI-DKVFDPERIVIVVDHVVPASTIKAAEMQKL 77 (412)
T ss_pred CHHHHHHHHhcCC-ccCCCCEEEEECCEEEEecccHHHHHHHHHH-cCC-CcCCCCCcEEEEcCCCCCCCChhHHHHHHH
Confidence 8999999999998 4899999999999999999999999999965 773 799999999999999999999999999999
Q ss_pred HHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhccc
Q 013449 82 LRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTG 161 (443)
Q Consensus 82 ~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~tg 161 (443)
+|+|||+|||++||+. ++|||||+++|+|+++||++|+|+||||||+||||+||||+|+||++.+|+||
T Consensus 78 ~r~fa~~~gi~~~~~~-----------g~GI~H~v~~E~g~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~~atg 146 (412)
T TIGR01343 78 AREFVKKTGIKHFFDV-----------GEGICHQVLPEEGLVKPGDLVVGADSHTCTYGALGAFATGMGSTDIAYAIATG 146 (412)
T ss_pred HHHHHHHcCCceeecC-----------CCCEEEEEchhhCcCCCCcEEEecCCCcCCcCchhheeecccHHHHHHHHhcC
Confidence 9999999999988865 47999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCceeeeccCC
Q 013449 162 KVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPAD 241 (443)
Q Consensus 162 ~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~f~~D 241 (443)
++||||||+|+|+|+|+|++||++|||||+||++++.+|++||+|||+|+++++||+++|||||||++|+||+++|||+|
T Consensus 147 ~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R~ti~NMa~E~GA~~~i~~~D 226 (412)
T TIGR01343 147 KTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEERMTLANMAIEAGGKTGIIEPD 226 (412)
T ss_pred cEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECCcccccCHHHHhhhhccccccCceeeEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCCCccccCCCCCcccEEEEEECCCcceeeecCCCCCcccccccccCceeeeEEEeccCCCChHHHHHH
Q 013449 242 GTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAA 321 (443)
Q Consensus 242 ~~t~~yl~~r~~~~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eDl~~a 321 (443)
++|++||+.|++++|+.+.+|+||.|+++++||||+|||+||+|++|+|++|++|++|++|||||||||||||+|||++|
T Consensus 227 e~t~~yl~~~~~~~~~~~~~D~da~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g~~id~~~IGSCTngr~~Dl~~a 306 (412)
T TIGR01343 227 EKTRAYLKERYKEPFRVYKSDEDAEYAKEVEIDASQLEPVVAAPHNVDNVHPVSEVEGIEVDQVFIGSCTNGRIEDLRVA 306 (412)
T ss_pred HHHHHHHHhhCcccccccCCCCCCCEEEEEEEEcccceeeEecCCCCCcEEEhHHhCCCeeeEEEEecCCCCChHHHHHH
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccc--ccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcEE
Q 013449 322 AKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVC 399 (443)
Q Consensus 322 A~iL~~~g~kv~--v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~ 399 (443)
|+||+ |+|++ ||++|+|+|++||.+++++| ++++|.+|||.| .+||||+|+|++ +|.+++||+|
T Consensus 307 A~il~--G~kv~~~v~~~v~P~S~~V~~~~~~~G--------~~~~l~~aG~~i-~~pgCg~C~G~~---~g~l~~ge~~ 372 (412)
T TIGR01343 307 AKILK--GRKVAPDVRLIVIPASRAVYLQALKEG--------LIEIFVKAGAVV-STPGCGPCLGRH---QGVLAPGEVC 372 (412)
T ss_pred HHHHc--CCCCCCCCCEEEeCCCHHHHHHHHHcC--------cHHHHHHcCCEE-cCCccccccCcC---CCcCCCCCEE
Confidence 99999 77876 99999999999999999976 599999999999 699999999984 5689999999
Q ss_pred EeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCccCCcc
Q 013449 400 VSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 439 (443)
Q Consensus 400 vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I~dp~ 439 (443)
|||+||||+||||++.+++|||||+|||||||+|+|+|||
T Consensus 373 vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~itdpr 412 (412)
T TIGR01343 373 ISTSNRNFKGRMGDPNAEIYLASPATAAASAVKGRIADPR 412 (412)
T ss_pred EEecCCCCCCCCCCCCCcEEECCHHHHHHHHhCcccCCCC
Confidence 9999999999999999999999999999999999999997
No 4
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=7e-141 Score=1085.69 Aligned_cols=410 Identities=45% Similarity=0.750 Sum_probs=396.6
Q ss_pred CCHHHHHHHhhcCCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHHHHHHH
Q 013449 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD 80 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~~~~~~ 80 (443)
|||+||||++|++++ ++|||++++++|++|+||.|+|++++.|++ +| .+||||+|+++++||++|+.+...+++++
T Consensus 1 ~Tl~eKIl~~h~~~~-v~~G~~v~~~vD~~~~hD~t~p~a~~~~~~-~g--~~v~~p~~~~~~~DH~~p~~~~~~a~~~~ 76 (412)
T TIGR02086 1 MTLAEKILSEKVGRP-VEAGEIVEVEVDLAMAHDGTGPLAIETLRE-LG--ARVEDPEKIVIFFDHVVPPPTVEAANRQK 76 (412)
T ss_pred CCHHHHHHHHhcCCc-cCCCCEEEEECCEEEEecccHHHHHHHHHH-cC--CcccCCCCEEEECCCCCCCCCHHHHHHHH
Confidence 899999999999987 899999999999999999999999999975 66 68999999999999999999999999999
Q ss_pred HHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhcc
Q 013449 81 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT 160 (443)
Q Consensus 81 ~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~t 160 (443)
.+|+|++++||++ |+. ++|||||+++|+|+++||++|+|+||||||+||||+||||+|+||++.+|+|
T Consensus 77 ~~r~fa~~~gi~~-~~~-----------g~GI~H~v~~E~G~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~lat 144 (412)
T TIGR02086 77 EIREFAKEHGIPV-FDV-----------GEGICHQVLVEEGYAGPGMVVVGGDSHTCTSGAVGAFATGMGATDVAIALAT 144 (412)
T ss_pred HHHHHHHHcCCcE-ECC-----------CCCeEeEEhhhcCccCCCcEEEecCCCccccchhhheeecccHHHHHHHHhc
Confidence 9999999999975 553 5899999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCceeeeccC
Q 013449 161 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 240 (443)
Q Consensus 161 g~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~f~~ 240 (443)
|++||+|||||+|+|+|+|++||++|||+|+|+++|+.+|++||+|||.|+++++||+++|||||||++|+||++++||+
T Consensus 145 g~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~~i~~~ 224 (412)
T TIGR02086 145 GKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDERMTLCNMAVEAGAKAGIVVP 224 (412)
T ss_pred CCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccccccCHHHHhhhhhcccccCceeeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhcCCCCCccccCCCCCcccEEEEEECCCcceeeecCCCCCcccccccccCceeeeEEEeccCCCChHHHHH
Q 013449 241 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLA 320 (443)
Q Consensus 241 D~~t~~yl~~r~~~~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eDl~~ 320 (443)
|++|++||+.|++.+|+.+.+|+||.|+++++||||+|||+||+|++|+|++|++++++++|||||||||||||+|||++
T Consensus 225 D~~t~~yl~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~va~P~~P~nv~~v~~~~~~~id~~~IGSCTngr~~Dl~~ 304 (412)
T TIGR02086 225 DEETYEYLKKRRGYEFRILRPDPGAKYDDEIEIDLSDLEPLVAVPHSVDNVRPVSDVEGTEIDQVFIGSCTNGRIEDLRI 304 (412)
T ss_pred CHHHHHHHHhcCCcccccccCCCCCCEEEEEEEEccceeEEecCCCChHhcccchhhcccceeEEEEeccCCCChHHHHH
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccc--ccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcE
Q 013449 321 AAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMV 398 (443)
Q Consensus 321 aA~iL~~~g~kv~--v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev 398 (443)
||+||| |+|++ ||++|+|+|++||++++++| ++++|.+|||.| .+||||+|+|++ +|++++||+
T Consensus 305 aA~vLk--G~kv~~~v~~~v~P~S~~v~~~~~~~G--------~~~~~~~aGa~i-~~pgCg~C~G~~---~g~~~~ge~ 370 (412)
T TIGR02086 305 AAEILE--GRRVHPDVRLIVVPASRKVYERALEEG--------IILTLIRAGAII-CPPGCGPCLGRH---MGVLGDGEV 370 (412)
T ss_pred HHHHHc--CCCCCCCcCEEEeCCCHHHHHHHHHcC--------cHHHHHHcCCEE-cCCccccccCcC---CCcCCCCCE
Confidence 999998 77886 99999999999999999975 699999999999 699999999994 568999999
Q ss_pred EEeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCccCCccc
Q 013449 399 CVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 440 (443)
Q Consensus 399 ~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I~dp~~ 440 (443)
||||+||||+||||++++++|||||+|||||||+|+|+|||+
T Consensus 371 ~vsT~NRNF~GR~G~~~~~~yLaSP~~aAAsAi~G~itdpr~ 412 (412)
T TIGR02086 371 CVSTTNRNFRGRMGSPDAEIYLASPATAAASAVEGYITDPQR 412 (412)
T ss_pred EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhCCccCCCCC
Confidence 999999999999999999999999999999999999999985
No 5
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=9.5e-141 Score=1086.40 Aligned_cols=414 Identities=49% Similarity=0.845 Sum_probs=399.8
Q ss_pred CCHHHHHHHhhcCCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHHHHHHH
Q 013449 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD 80 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~~~~~~ 80 (443)
|||+||||++|++++ ++|||++++++|++++||.|+|++++.|++ +| ..+||+|+|+++++||++|+.+...+++++
T Consensus 3 ~Tl~eKIl~~h~~~~-v~~G~~v~v~vD~~~~hD~t~p~a~~~~~~-~g-~~~v~~P~~~~~~~DH~~p~~~~~~a~~~~ 79 (418)
T PRK00402 3 MTLAEKILARHSGRD-VSPGDIVEAKVDLVMAHDITGPLAIKEFEK-IG-GDKVFDPSKIVIVFDHFVPAKDIKSAEQQK 79 (418)
T ss_pred cCHHHHHHHHhcCCC-CCCCCEEEEECCEEEEecccHHHHHHHHHH-cC-CCccCCCCcEEEECCCCCCCCChhhHHHHH
Confidence 699999999999986 789999999999999999999999999965 66 378999999999999999999999999999
Q ss_pred HHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhcc
Q 013449 81 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT 160 (443)
Q Consensus 81 ~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~t 160 (443)
++|+|+|+|||++||+.+ +|||||+++|+|+++||++|+|+||||||+||||+||||+|++|++.+|+|
T Consensus 80 ~~r~fa~~~gi~~~~~~g-----------~GI~H~v~~E~g~~~PG~~ivg~DSHT~t~GalG~~a~GvG~td~~~~l~t 148 (418)
T PRK00402 80 ILREFAKEQGIPNFFDVG-----------EGICHQVLPEKGLVRPGDVVVGADSHTCTYGALGAFATGMGSTDMAAAMAT 148 (418)
T ss_pred HHHHHHHHcCCcceeCCC-----------CCEeeEehhhcCccCCCcEEEeCCCCccccCccceEEecccHHHHHHHHhc
Confidence 999999999999888754 699999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCceeeeccC
Q 013449 161 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 240 (443)
Q Consensus 161 g~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~f~~ 240 (443)
|++||+|||+|+|+|+|+|++||++|||+|+|+++|+.+|++||+|||+|+++++||+++|||||||++|+||+++|||+
T Consensus 149 g~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NM~~E~GA~~~i~~~ 228 (418)
T PRK00402 149 GKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMDERMTLANMAIEAGAKAGIFAP 228 (418)
T ss_pred CcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCccccCCHHHHhhhhhcccccCceeeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhcCCCCCccccCCCCCcccEEEEEECCCcceeeecCCCCCcccccccccCceeeeEEEeccCCCChHHHHH
Q 013449 241 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLA 320 (443)
Q Consensus 241 D~~t~~yl~~r~~~~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eDl~~ 320 (443)
|++|++||+.|+.++|+.+.+|++|.|+++++||||+|||+||+|++|||++|++|+++++|||||||||||||+|||++
T Consensus 229 D~~t~~yl~~~~~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g~~id~~~IGSCTngr~eDl~~ 308 (418)
T PRK00402 229 DEKTLEYLKERAGRDYKPWKSDEDAEYEEVYEIDLSKLEPQVAAPHLPDNVKPVSEVEGTKVDQVFIGSCTNGRLEDLRI 308 (418)
T ss_pred ChHHHHHHHhhcccccccccCCCCCCEEEEEEEEcccceeeeecCCCccceeEchhhCCceeeEEEEecCCCCChHHHHH
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccc--ccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcE
Q 013449 321 AAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMV 398 (443)
Q Consensus 321 aA~iL~~~g~kv~--v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev 398 (443)
||+||| |+|++ ||++|+|+|++||.+++++| ++++|.+|||.| .+||||+|+|++ +|.+++||+
T Consensus 309 aA~il~--G~kv~~~V~~~v~PgS~~V~~~~~~~G--------~~~~l~~aGa~i-~~pgCg~C~G~~---~g~~~~ge~ 374 (418)
T PRK00402 309 AAEILK--GRKVAPGVRLIVIPASQKIYLQALKEG--------LIEIFVDAGAVV-STPTCGPCLGGH---MGVLAPGEV 374 (418)
T ss_pred HHHHHc--CCCCCCCccEEEeCCCHHHHHHHHHcC--------cHHHHHHcCCEE-cCCccccccCcC---CCcCCCCCE
Confidence 999998 77776 99999999999999999975 599999999999 699999999984 468999999
Q ss_pred EEeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCccCCccccc
Q 013449 399 CVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 442 (443)
Q Consensus 399 ~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I~dp~~~~ 442 (443)
||||+||||+||||++.+++|||||++||||||+|+|+|||+++
T Consensus 375 ~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~itdpr~~l 418 (418)
T PRK00402 375 CLSTTNRNFKGRMGSPESEVYLASPAVAAASAVTGKITDPREVL 418 (418)
T ss_pred EEEecCCCCCCCCCCCCCeEEECCHHHHHHHHhCCeeCChHHcC
Confidence 99999999999999999999999999999999999999999975
No 6
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=8.3e-138 Score=1080.13 Aligned_cols=414 Identities=36% Similarity=0.570 Sum_probs=393.3
Q ss_pred CCHHHHHHHhhcCCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCc--------
Q 013449 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSD-------- 72 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~-------- 72 (443)
|||+||||++|++++ +++| +++++||++|+||.|+|++++.|++ +| .++|||+++++++||++|+.+
T Consensus 4 ~Tl~eKI~~~h~~~~-~~~g-~v~~~vD~~~~hD~t~p~a~~~~~~-~g--~~v~~P~~~~~~~DH~vp~~~~~~~~~~~ 78 (471)
T PRK12466 4 RTLYDKLWDSHTVAR-LDDG-HVLLYIDRHLLNEYTSPQAFSGLRA-RG--RTVRRPDLTLAVVDHVVPTRPGRDRGITD 78 (471)
T ss_pred cCHHHHHHHHhcCCC-CCCC-EEEEeccEEEEeccccHHHHHHHHH-cC--CcccCCCCeEEEeCCCCCCCccccccccC
Confidence 699999999999987 7777 9999999999999999999999976 56 489999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChh
Q 013449 73 ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNT 152 (443)
Q Consensus 73 ~~~~~~~~~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~t 152 (443)
...+++++++|+|++++|| +||+.+ ||++|||||+++|+|+++||++|||+||||||+||||+||||||++
T Consensus 79 ~~~~~~~~~~r~~a~~~gi-~~~~~~--------~p~~GI~Hqv~~E~G~~~PG~~ivg~DSHT~t~GalGala~GvG~t 149 (471)
T PRK12466 79 PGGALQVDYLRENCADFGI-RLFDVD--------DPRQGIVHVVAPELGLTLPGMVIVCGDSHTTTYGALGALAFGIGTS 149 (471)
T ss_pred HHHHHHHHHHHHHHHHcCC-eeeccC--------CCCCCEEeEEccccCcccCCceEEccCCCcCCcChhhheEEccCHH
Confidence 8888999999999999999 467654 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcC
Q 013449 153 DAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAG 232 (443)
Q Consensus 153 d~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~G 232 (443)
|++.+|+||++||+|||+|+|+|+|+|++||++|||||+|+++||.+|++||+|||+||+|++||+++|||||||++|+|
T Consensus 150 d~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~~~R~Ti~NMa~E~G 229 (471)
T PRK12466 150 EVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSMEGRMTLCNMAVEAG 229 (471)
T ss_pred HHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHHHHhhhhhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccCChhHHHHhhhcCC-----------CCCccccCCCCCcccEEEEEECCCcceeeecCCCCCccccccc-----
Q 013449 233 GKNGVVPADGTTFKYLEDKTS-----------LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARE----- 296 (443)
Q Consensus 233 A~~~~f~~D~~t~~yl~~r~~-----------~~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e----- 296 (443)
|+++|||+|++|++||+.|++ +.|+.+.+|++|.|+++++||||+|||+||+|++|+|++|++|
T Consensus 230 A~~gi~~~D~~t~~yl~~~~~~~~~~~~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~~~ 309 (471)
T PRK12466 230 ARGGLIAPDETTFDYLRGRPRAPKGALWDAALAYWRTLRSDADAVFDREVEIDAADIAPQVTWGTSPDQAVPITGRVPDP 309 (471)
T ss_pred ceEEEecCChHHHHHHHhCCCchhHHHHHHHHhhhhcccCCCCCceEEEEEEEcccceEeecCCCChhhceEccccCcCh
Confidence 999999999999999999875 3467788999999999999999999999999999999999988
Q ss_pred --------------------------ccCceeeeEEEeccCCCChHHHHHHHHHHHhCCCccc--ccEEEeCCcHHHHHH
Q 013449 297 --------------------------CKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMD 348 (443)
Q Consensus 297 --------------------------~~~~~Id~a~IGSCTng~~eDl~~aA~iL~~~g~kv~--v~~~v~P~S~~v~~~ 348 (443)
+++++|||||||||||||+|||++||+||| |+|++ ||++|+|+|++||.+
T Consensus 310 ~~~~~~~~~~~~~~~~~y~~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~aA~ilk--G~kv~~~V~~~v~PgS~~V~~~ 387 (471)
T PRK12466 310 AAEADPARRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAAAAVLR--GRKVAPGVRAMVVPGSGAVRRQ 387 (471)
T ss_pred hhhcchhhhhhhhhhhhhcccCCCcccCCceEEEEEEeccCCCChHHHHHHHHHHc--CCCCCCCccEEEECCCHHHHHH
Confidence 678999999999999999999999999999 77886 999999999999999
Q ss_pred HhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcEEEeecCCCCCCCCCCCCCceEecCHHHHHH
Q 013449 349 VYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAA 428 (443)
Q Consensus 349 a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GR~G~~~~~~yLaSP~tvaA 428 (443)
|+++| ++++|.+|||.| .+||||+|+|++ ++.+++||+||||+||||+||||+ ++++|||||++|||
T Consensus 388 ~~~~G--------l~~~~~~aG~~i-~~~gCg~C~G~~---~~~~~~ge~~vsT~NRNF~GR~G~-~~~~yLaSP~~vAA 454 (471)
T PRK12466 388 AEAEG--------LARIFIAAGFEW-REPGCSMCLAMN---DDVLAPGERCASTTNRNFEGRQGP-GARTHLMSPAMVAA 454 (471)
T ss_pred HHHCC--------cHHHHHHcCCEE-cCCccccccCcC---CCCCCCCCEEEEecCCCCCCCCCC-CCcEEECCHHHHHH
Confidence 99976 599999999999 699999999985 457889999999999999999997 89999999999999
Q ss_pred HHhcCccCCcccccC
Q 013449 429 SALTGYVTDPREFLE 443 (443)
Q Consensus 429 sAl~G~I~dp~~~~~ 443 (443)
|||+|+|+|||+++.
T Consensus 455 sAi~G~I~dpr~~l~ 469 (471)
T PRK12466 455 AAVAGHITDVRSLLQ 469 (471)
T ss_pred HHhCcEeCCHHHhhc
Confidence 999999999999873
No 7
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=2.6e-137 Score=1075.01 Aligned_cols=412 Identities=36% Similarity=0.573 Sum_probs=390.2
Q ss_pred CCHHHHHHHhhcCCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCc-------H
Q 013449 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSD-------E 73 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~-------~ 73 (443)
|||+||||++|+++. ++||+++++||++|+||.|+|++++.|++ +| .+||+|+|+++++||++|+.+ .
T Consensus 3 ~Tl~eKI~~~h~~~~--~~g~~v~~~vD~~~~hD~t~~~a~~~~~~-~g--~~v~~p~~~~~~~DH~vp~~~~~~~~~~~ 77 (465)
T TIGR00170 3 RTLYEKLFDAHIVYE--AEGETPLLYIDRHLIHEVTSPQAFEGLRQ-AG--RKVRRPQKTFATMDHNIPTQNRDFNIKDE 77 (465)
T ss_pred CCHHHHHHHHhcCCC--CCCCEEEEEeeeeeecccchHHHHHHHHH-cC--CCcCCCcCEEEEeCCCCCCCCccccccCH
Confidence 699999999999986 58999999999999999999999999976 66 489999999999999999976 3
Q ss_pred HHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhH
Q 013449 74 RANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 153 (443)
Q Consensus 74 ~~~~~~~~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td 153 (443)
..+++++++|+|+++|||+ ||+.+ ||++|||||+++|+|+++||++|+|+||||||+||||+||||||+||
T Consensus 78 ~~~~~~~~~r~~a~~~gi~-~~~v~--------~p~~GI~Hqv~~E~g~~~PG~~ivgtDSHT~t~GalGala~GvG~te 148 (465)
T TIGR00170 78 VAKIQVTELEKNCKEFGVR-LFDLH--------SVDQGIVHVMGPEQGLTLPGMTIVCGDSHTSTHGAFGALAFGIGTSE 148 (465)
T ss_pred HHHHHHHHHHHHHHHhCCe-eeccC--------CCCCCEeCeEccccCcccCCceEEecCCCccccccccceEEccCHHH
Confidence 6778889999999999995 56654 57899999999999999999999999999999999999999999999
Q ss_pred HHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCc
Q 013449 154 AGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGG 233 (443)
Q Consensus 154 ~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA 233 (443)
++.+|+||++||+|||+|+|+|+|+|++||++|||||+|+++||.+|++||+|||+|++|++||+++|||||||++|+||
T Consensus 149 ~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~~R~Ti~NMa~E~GA 228 (465)
T TIGR00170 149 VEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEGRMTVCNMAIEAGA 228 (465)
T ss_pred HHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceEEEEEEccccccccHHHhhhhhhcchhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCChhHHHHhhhcCC-----------CCCccccCCCCCcccEEEEEECCCcceeeecCCCCCccccccc------
Q 013449 234 KNGVVPADGTTFKYLEDKTS-----------LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARE------ 296 (443)
Q Consensus 234 ~~~~f~~D~~t~~yl~~r~~-----------~~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e------ 296 (443)
+++|||+|++|++||+.|++ ..|+.+.+|+||.|+++++||||+|||+||+|++|+|++|++|
T Consensus 229 ~~gi~~~D~~t~~yl~~r~~~~~~~~~~~~~~~~~~l~~d~~a~Y~~~i~iDls~leP~Va~P~~P~n~~~v~e~~~~~~ 308 (465)
T TIGR00170 229 RAGLIAPDETTFEYCKGRPHAPKGKEFDKAVAYWKTLKTDEGAVFDTVITLEANDISPQVTWGTNPGQVLPVNSEVPDPE 308 (465)
T ss_pred eeeEecCChhHHHHHhcCCcccchhHHHHHHHhhhhccCCCCCceeEEEEEEcccceeeecCCCChhhccCccccCCChh
Confidence 99999999999999998765 2367788999999999999999999999999999999999998
Q ss_pred -------------------------ccCceeeeEEEeccCCCChHHHHHHHHHHHhCCCccc--ccEEEeCCcHHHHHHH
Q 013449 297 -------------------------CKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDV 349 (443)
Q Consensus 297 -------------------------~~~~~Id~a~IGSCTng~~eDl~~aA~iL~~~g~kv~--v~~~v~P~S~~v~~~a 349 (443)
+++++|||||||||||||+|||++||+||| |+|++ ||++|+|+|++||.+|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA~vlk--G~kv~~~V~~~v~PgS~~V~~~~ 386 (465)
T TIGR00170 309 SFADPVDKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAAAVIK--GRKVADNVKALVVPGSGLVKLQA 386 (465)
T ss_pred hhcchhhhhhhhhhhhhccccCCcccCCCeEEEEEEecCCCCCHHHHHHHHHHhc--CCCcCCCccEEEECCCHHHHHHH
Confidence 678999999999999999999999999999 78887 9999999999999999
Q ss_pred hcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcEEEeecCCCCCCCCCCCCCceEecCHHHHHHH
Q 013449 350 YTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAAS 429 (443)
Q Consensus 350 ~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAs 429 (443)
+++| ++++|.+|||.| .+||||+|+|++ ++.+++||+|+||+||||+||||+ .+++|||||++||||
T Consensus 387 ~~~G--------l~~~l~~aG~~i-~~~gCg~C~G~~---~~~~~~ge~~isTsNRNF~GR~G~-~~~~yLaSP~~vAAs 453 (465)
T TIGR00170 387 EKEG--------LDKIFIEAGFEW-REPGCSMCLGMN---NDRLPEGERCASTSNRNFEGRQGR-GGRTHLVSPAMAAAA 453 (465)
T ss_pred HHCC--------cHHHHHHcCCEE-cCCccccccCcC---CCCCCCCCEEEEecCCCCCCCCCC-CCCEEEcCHHHHHHH
Confidence 9975 599999999999 699999999995 457899999999999999999997 789999999999999
Q ss_pred HhcCccCCcccc
Q 013449 430 ALTGYVTDPREF 441 (443)
Q Consensus 430 Al~G~I~dp~~~ 441 (443)
||+|+|+|||++
T Consensus 454 Ai~G~itdpr~~ 465 (465)
T TIGR00170 454 AIHGHFVDIRKF 465 (465)
T ss_pred HhCceecCcCcC
Confidence 999999999985
No 8
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=3.1e-136 Score=1068.07 Aligned_cols=413 Identities=37% Similarity=0.568 Sum_probs=391.3
Q ss_pred CCHHHHHHHhhcCCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcH-------
Q 013449 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDE------- 73 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~------- 73 (443)
|||+||||++|++++ + |||+++++||++|+||.|+|++++.|++ +| .++|+|+|+++++||++|+++.
T Consensus 3 ~tl~eKIl~~h~~~~-~-~g~~v~~~vD~~~~hD~t~~~a~~~~~~-~g--~~v~~p~~~~~~~DH~v~~~~~~~~~~~~ 77 (466)
T PRK05478 3 KTLYDKLWDAHVVHE-E-EDGPDLLYIDRHLVHEVTSPQAFEGLRL-AG--RKVRRPDLTFATMDHNVPTTDRDLPIADP 77 (466)
T ss_pred CCHHHHHHHHhcCCC-C-CCCEEEEEeccceeecccHHHHHHHHHH-cC--CCccCCCCeEEEcCCCCCCCcccccccCH
Confidence 699999999999986 3 9999999999999999999999999976 56 4899999999999999999876
Q ss_pred HHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhH
Q 013449 74 RANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 153 (443)
Q Consensus 74 ~~~~~~~~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td 153 (443)
..+++++++|+|+++|||+ ||+.+ ||++|||||+++|+|+++||++|||+||||||+||||+||||||++|
T Consensus 78 ~~~~~~~~~r~~a~~~gi~-~~~~~--------~~~~GI~Hqv~~E~g~~~PG~~ivGtDSHT~t~GalGa~a~GvG~td 148 (466)
T PRK05478 78 VSRIQVETLEKNCKEFGIT-LFDLG--------DPRQGIVHVVGPEQGLTLPGMTIVCGDSHTSTHGAFGALAFGIGTSE 148 (466)
T ss_pred HHHHHHHHHHHHHHHcCCe-eeccC--------CCCCCEeCeEccccccccCCceEEecCCCccccchhhheEeCCCHHH
Confidence 7788899999999999994 56654 57899999999999999999999999999999999999999999999
Q ss_pred HHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCc
Q 013449 154 AGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGG 233 (443)
Q Consensus 154 ~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA 233 (443)
++.+|+||++||+|||+|+|+|+|+|++||++|||||+|+++||.+|++|++|||+|||+++||+++|+|||||++|+||
T Consensus 149 ~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~~R~Ti~NMa~E~GA 228 (466)
T PRK05478 149 VEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSMEGRMTICNMSIEAGA 228 (466)
T ss_pred HHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceEEEEEECccccccCHHHHhhhhhcccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCChhHHHHhhhcCCC-----------CCccccCCCCCcccEEEEEECCCcceeeecCCCCCccccccc------
Q 013449 234 KNGVVPADGTTFKYLEDKTSL-----------PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARE------ 296 (443)
Q Consensus 234 ~~~~f~~D~~t~~yl~~r~~~-----------~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e------ 296 (443)
+++|||+|++|++||+.|..+ .|+.+.+|+||+|+++++||||+|||+||+|++|+|++|++|
T Consensus 229 ~~~i~~~De~t~~yl~~r~~~~~~~~~~~a~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~~~~ 308 (466)
T PRK05478 229 RAGLVAPDETTFEYLKGRPFAPKGEDWDKAVAYWKTLKSDEDAVFDKVVTLDAADIEPQVTWGTNPGQVISIDGKVPDPE 308 (466)
T ss_pred eeeeecCCHhHHHHHhcCCccccHHHHHHHHHhhhcccCCCCCceeEEEEEEcccceeeecCCCChhhceEccccCcChh
Confidence 999999999999999987653 467788999999999999999999999999999999999998
Q ss_pred -------------------------ccCceeeeEEEeccCCCChHHHHHHHHHHHhCCCccc--ccEEEeCCcHHHHHHH
Q 013449 297 -------------------------CKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDV 349 (443)
Q Consensus 297 -------------------------~~~~~Id~a~IGSCTng~~eDl~~aA~iL~~~g~kv~--v~~~v~P~S~~v~~~a 349 (443)
+++++|||||||||||||+|||++||+||| |+|++ ||++|+|+|++||.++
T Consensus 309 ~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA~ilk--G~kv~~~V~~~v~PgS~~V~~~~ 386 (466)
T PRK05478 309 DFADPVKRASAERALAYMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAAAVVK--GRKVAPGVRALVVPGSGLVKAQA 386 (466)
T ss_pred hhcchhhhhhhhhhhhhcccccCCccCCCeEEEEEEecCCCCCcHHHHHHHHHhc--CCCCCCCceEEEECCCHHHHHHH
Confidence 688999999999999999999999999999 77886 9999999999999999
Q ss_pred hcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcEEEeecCCCCCCCCCCCCCceEecCHHHHHHH
Q 013449 350 YTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAAS 429 (443)
Q Consensus 350 ~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAs 429 (443)
+++| ++++|.+|||.| .+||||+|+|++ ++.+++||+||||+||||+|||| +.+++|||||++||||
T Consensus 387 ~~~G--------l~~~l~~aG~~i-~~~gCg~C~G~~---~~~l~~ge~~vst~NRNF~GR~G-~~~~~yLaSP~~vaAs 453 (466)
T PRK05478 387 EAEG--------LDKIFIEAGFEW-REPGCSMCLAMN---PDKLPPGERCASTSNRNFEGRQG-KGGRTHLVSPAMAAAA 453 (466)
T ss_pred HHCC--------cHHHHHHcCCEE-cCCccccccCcC---CCCCCCCCEEEEecCCCCCCCCC-CCCCEEEcCHHHHHHH
Confidence 9976 599999999999 699999999985 45789999999999999999999 6789999999999999
Q ss_pred HhcCccCCccccc
Q 013449 430 ALTGYVTDPREFL 442 (443)
Q Consensus 430 Al~G~I~dp~~~~ 442 (443)
||+|+|+|||++.
T Consensus 454 Ai~G~Itdpr~~~ 466 (466)
T PRK05478 454 AITGHFVDVRELL 466 (466)
T ss_pred HhCCCcCChhhcC
Confidence 9999999999873
No 9
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=2.8e-133 Score=1022.90 Aligned_cols=380 Identities=50% Similarity=0.823 Sum_probs=365.6
Q ss_pred EEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHHHHHHHHHHHHHHHcCcceeecccccCCcccCCC
Q 013449 29 ILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPD 108 (443)
Q Consensus 29 ~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~~~~~~~~r~f~~~~gi~~f~~~~~~~~~~~~pp 108 (443)
++|+||.|+|++++.|++ +|. .++|||+|+++++||++|+++...+++++++|+|++++||+ ||+..
T Consensus 1 ~~~~hD~t~p~a~~~~~~-~g~-~~v~dp~k~~~~~DH~vp~~~~~~~~~~~~~r~~a~~~gi~-~~~~~---------- 67 (382)
T cd01583 1 LHLVHDVTSPQAFEGLRE-AGR-EKVWDPEKIVAVFDHNVPTPDIKAAEQVKTLRKFAKEFGIN-FFDVG---------- 67 (382)
T ss_pred CEEEEeccHHHHHHHHHH-hCC-cccCCCCceEEEcCCCCCCCCHHHHHHHHHHHHHHHHhCcc-cccCC----------
Confidence 478999999999999976 664 68999999999999999999999999999999999999984 66652
Q ss_pred CCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHH
Q 013449 109 YKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDL 188 (443)
Q Consensus 109 g~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDv 188 (443)
++|||||+++|+|+++||++|+|+||||||+||||+||||+|+||++.+|+||++||+|||+|+|+|+|+|++||++|||
T Consensus 68 g~GI~H~v~~E~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~vPeti~v~l~G~l~~gV~aKDv 147 (382)
T cd01583 68 RQGICHVILPEKGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKDV 147 (382)
T ss_pred CCCEeeEEeccccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeCCcEEEEEEEeecCCCcCHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCceeeeccCChhHHHHhhhcCCCCCccccCCCCCccc
Q 013449 189 ILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFL 268 (443)
Q Consensus 189 iL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~f~~D~~t~~yl~~r~~~~~~~l~~D~~a~Y~ 268 (443)
||+|+++||.+|++||+|||+|++|++||+++|||||||++|+|||++|||+|++|++||+.|++++|+.+++|+||.|+
T Consensus 148 iL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~yL~~~~~~~~~~~~~D~~a~Y~ 227 (382)
T cd01583 148 ILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEYLKGRGKAYWKELKSDEDAEYD 227 (382)
T ss_pred HHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHHHHhcCccchhhcCCCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCcceeeecCCCCCcccccccccCceeeeEEEeccCCCChHHHHHHHHHHHhCCCccc--ccEEEeCCcHHHH
Q 013449 269 SEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVW 346 (443)
Q Consensus 269 ~~i~iDls~leP~Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eDl~~aA~iL~~~g~kv~--v~~~v~P~S~~v~ 346 (443)
++++||||+|||+||+|++|+|++|++|+++++|||||||||||||+|||++||+||| |+|++ ||++|+|+|++||
T Consensus 228 ~~~~iDls~leP~va~P~~P~nv~~v~e~~~~~Id~v~IGSCTNgr~eDl~~AA~iLk--G~kv~~~Vr~~v~P~S~~V~ 305 (382)
T cd01583 228 KVVEIDASELEPQVAWPHSPDNVVPVSEVEGIKIDQVFIGSCTNGRLEDLRAAAEILK--GRKVADGVRLIVVPASQRVY 305 (382)
T ss_pred EEEEEEcccceeeEecCCCccceEECcccCCcceeEEEEeccCCCChHHHHHHHHHhc--CCCCCCCccEEEECCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 77886 9999999999999
Q ss_pred HHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcEEEeecCCCCCCCCCCCCCceEecCHHHH
Q 013449 347 MDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTA 426 (443)
Q Consensus 347 ~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GR~G~~~~~~yLaSP~tv 426 (443)
++|+++| ++++|.+|||.| .+||||+|+|++ +|++++||+||||+||||+||||++.+++|||||+||
T Consensus 306 ~~~~~~G--------~~~~l~~aGa~i-~~pgCg~C~G~~---~g~~~~ge~~vsT~NRNF~GRmG~~~~~~yLaSP~~v 373 (382)
T cd01583 306 KQAEKEG--------LIEIFIEAGAEV-RPPGCGACLGGH---MGVLAPGERCVSTSNRNFKGRMGSPGARIYLASPATA 373 (382)
T ss_pred HHHHHCC--------cHHHHHHCCCEE-eCCCcccccCCC---CCcCCCCCEEEEecCCCCCcCCCCCCCcEEECCHHHH
Confidence 9999975 699999999999 699999999984 5689999999999999999999999999999999999
Q ss_pred HHHHhcCcc
Q 013449 427 AASALTGYV 435 (443)
Q Consensus 427 aAsAl~G~I 435 (443)
|||||+|+|
T Consensus 374 AAsAi~G~i 382 (382)
T cd01583 374 AASAITGEI 382 (382)
T ss_pred HHHHhcccC
Confidence 999999997
No 10
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=1.7e-130 Score=1059.53 Aligned_cols=414 Identities=30% Similarity=0.504 Sum_probs=390.2
Q ss_pred CCHHHHHHHhhc-----CCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHH
Q 013449 1 MTLTEKIFSRAS-----EKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERA 75 (443)
Q Consensus 1 ~Tl~EKIl~~~~-----~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~ 75 (443)
|||+||||++|+ |+ .|+|||+|+++||++|+||.|+|+++++ . ++| ..+||+|+|+++++||++|+.+.+.
T Consensus 2 ~Tl~EKIl~~h~v~~~~g~-~v~~G~~i~i~vD~~l~hD~t~p~~~~~-~-~~g-~~~V~~p~~~v~~~DH~v~~~~~~~ 77 (712)
T TIGR00139 2 QNLTEKIVQKYAVGLPEGK-FVHSGDYVSIKPAHCMSHDNSWPCALKF-M-GIG-ASKIHNPDQIVMTLDHDIQNKSDKN 77 (712)
T ss_pred CCHHHHHHHHhcccccCCc-ccCCCCEEEEecCEEEEEeccHHHHHHH-H-HcC-CCccCCCCCEEEEcCCCCCCCCHHH
Confidence 799999999998 54 4889999999999999999999998884 3 377 4799999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHH
Q 013449 76 NRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAG 155 (443)
Q Consensus 76 ~~~~~~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a 155 (443)
+++++++|+|||+|||+ ||+ ||+|||||++.|+||++||+++||+||||||+||||+||||+|++|++
T Consensus 78 ~~~~~~l~~fAkk~Gi~-f~~-----------~g~GI~Hqv~~E~g~a~PG~~ivGsDSHT~t~GalGala~GvG~tDva 145 (712)
T TIGR00139 78 LKKYKNIEEFAKKHGID-FYP-----------AGRGIGHQIMIEEGFAFPGNLAVASDSHSNMYGGLGCLGTPIVRTDAA 145 (712)
T ss_pred HHHHHHHHHHHHHhCCe-EEC-----------CCCCeEeEeecccCcccCCeEEEccCcCcCccchhhheeeccchHHHH
Confidence 99999999999999994 665 458999999999999999999999999999999999999999999999
Q ss_pred HHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEec--cccccCChhhHhhHhhhhhhcCc
Q 013449 156 FVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVG--TTVERLSMEERMTLCNMVVEAGG 233 (443)
Q Consensus 156 ~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G--~~v~~Ls~~~R~ti~NMa~E~GA 233 (443)
.+|+||++||+|||+|+|+|+|+||+||++|||||+|+++|+.+|++||+|||+| +|+++||+++|+|||||++|+||
T Consensus 146 ~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv~~Ls~~~R~TI~NM~~E~GA 225 (712)
T TIGR00139 146 AIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLNALPIDHRLTIANMTTEWGA 225 (712)
T ss_pred HHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCcceEEEEEecCcchhhcCCHHHHhhHhhhhHhhCc
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eeeeccCChhHHHHhhhcCCC--------------------------CCccccCCCCCcccEEEEEECCCcceeeecCCC
Q 013449 234 KNGVVPADGTTFKYLEDKTSL--------------------------PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHS 287 (443)
Q Consensus 234 ~~~~f~~D~~t~~yl~~r~~~--------------------------~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~ 287 (443)
++++||+|++|++||+.|++. .|..+.+|+||.|+++++||||+|+|+||+|++
T Consensus 226 ~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~l~aD~~A~Y~~~~~iDLs~leP~vA~P~~ 305 (712)
T TIGR00139 226 LSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAEIPLKADKDAHYAKELFIDLASLSHYVSGPNS 305 (712)
T ss_pred eeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHHHhhccCCCCCCCCEEEEEEEEcccceeeeeCCCC
Confidence 999999999999999987421 125678999999999999999999999999999
Q ss_pred CCcccccccc--cCceeeeEEEeccCCCChHHHHHHHHHHHh-------CCCccc--ccEEEeCCcHHHHHHHhcCCCCC
Q 013449 288 PDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLA-------SGKKVK--VPTFLVPATQKVWMDVYTLPVPG 356 (443)
Q Consensus 288 p~n~~~v~e~--~~~~Id~a~IGSCTng~~eDl~~aA~iL~~-------~g~kv~--v~~~v~P~S~~v~~~a~~~g~~g 356 (443)
|+|++|++++ ++++|||||||||||+|+|||++||+||++ +++||+ |+++|+|+|++|+++|+++|
T Consensus 306 p~~~~~v~el~~~~~~Id~~~IGSCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~G--- 382 (712)
T TIGR00139 306 VKVANPLKDLEAQDIKIDKAYLVSCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNG--- 382 (712)
T ss_pred CCCcCcHHHhhhcCceeeeEEEecCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCC---
Confidence 9999999999 899999999999999999999999999984 247776 99999999999999999975
Q ss_pred CCCchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcEEEeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCccC
Q 013449 357 SGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVT 436 (443)
Q Consensus 357 ~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I~ 436 (443)
++++|.+|||.+ .+||||+|+|++ ++.+++||++|||+||||+||||++++++|||||+|||||||+|+|+
T Consensus 383 -----l~~~l~~AGa~i-~~~gCg~CiG~~---~~~~~~gev~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~It 453 (712)
T TIGR00139 383 -----AWEKLLEAGAIP-LPAGCGPCIGLG---AGLLEPGEVGISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKIS 453 (712)
T ss_pred -----cHHHHHHcCCEE-cCCccccccCcC---CCCCCCCCEEEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCccC
Confidence 599999999999 699999999995 45788999999999999999999999999999999999999999999
Q ss_pred Cccccc
Q 013449 437 DPREFL 442 (443)
Q Consensus 437 dp~~~~ 442 (443)
|||+|+
T Consensus 454 dPr~~~ 459 (712)
T TIGR00139 454 GPAEVL 459 (712)
T ss_pred CHHHHh
Confidence 999875
No 11
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=2.2e-129 Score=991.82 Aligned_cols=377 Identities=33% Similarity=0.543 Sum_probs=360.6
Q ss_pred eEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHHHHHHHHHHHHHHHcCcceeecccccCCcccCC
Q 013449 28 DILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANP 107 (443)
Q Consensus 28 D~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~~~~~~~~r~f~~~~gi~~f~~~~~~~~~~~~p 107 (443)
|++|+||.|+|++++.|++ +|. .++|+| ++++++||++|+++.+.+++++++|+|+|+|||+ ||+.
T Consensus 1 D~~~~hD~t~p~a~~~~~~-~g~-~~v~~~-~~~~~~DH~~p~~~~~~a~~~~~lr~~a~~~gi~-~~~~---------- 66 (380)
T cd01585 1 DQTLTQDATGTMAYLQFEA-MGV-DRVRTE-LSVSYVDHNTLQTDFENADDHRFLQTVAARYGIY-FSRP---------- 66 (380)
T ss_pred CceEEEeccHHHHHHHHHH-cCC-CeeCCC-CeEEEeCCCCCCCChHHHHHHHHHHHHHHHcCCE-EECC----------
Confidence 7899999999999999965 774 689999 6999999999999999999999999999999995 6653
Q ss_pred CCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHH
Q 013449 108 DYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKD 187 (443)
Q Consensus 108 pg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akD 187 (443)
++|||||+++|+ |++||++|+|+||||||+||||+||||||+||++.+|+||++||+|||+|+|+|+|+|++||++||
T Consensus 67 -g~GI~H~v~~E~-~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~vPetv~V~l~G~l~~gV~aKD 144 (380)
T cd01585 67 -GNGICHQVHLER-FAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPMPKVVGVRLTGELPPWVTAKD 144 (380)
T ss_pred -CCCeeeeecHhh-ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccCCcEEEEEEEccCCCCcCHHH
Confidence 589999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCceeeeccCChhHHHHhhhcCCC-CCccccCCCCCc
Q 013449 188 LILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSL-PYEPVYSDEKAS 266 (443)
Q Consensus 188 viL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~f~~D~~t~~yl~~r~~~-~~~~l~~D~~a~ 266 (443)
|+|+|+++||.+|++||+|||+||++++||+++|||||||++|+|||++|||+|++|++||+.+++. +|+.+.+|+||.
T Consensus 145 viL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~yl~~~gr~~~~~~l~~D~~a~ 224 (380)
T cd01585 145 VILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREFLAAQGREDDWVELAADADAE 224 (380)
T ss_pred HHHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHHHHhcCCchhccccCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999998754 688899999999
Q ss_pred ccEEEEEECCCcceeeecCCCCCcccccccccCceeeeEEEeccCCCChHHHHHHHHHHHhCCCccc--ccEEEeCCcHH
Q 013449 267 FLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQK 344 (443)
Q Consensus 267 Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eDl~~aA~iL~~~g~kv~--v~~~v~P~S~~ 344 (443)
|+++++||||+|||+||+|++|+|++|++|+++++|||||||||||||+|||++||+||| |+|++ ||++|+|+|++
T Consensus 225 Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g~~Id~~~IGSCTngr~eDl~~aA~iLk--G~kv~~~V~~~v~P~S~~ 302 (380)
T cd01585 225 YDEEIEIDLSELEPLIARPHSPDNVVPVREVAGIKVDQVAIGSCTNSSYEDLMTVAAILK--GRRVHPHVSMVVAPGSKQ 302 (380)
T ss_pred eEEEEEEEcccceeeecCCCCCCceeEhhhhCCceEEEEEEecCCCCCcHHHHHHHHHHc--CCCCCCCceEEEECCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999 77886 99999999999
Q ss_pred HHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcEEEeecCCCCCCCCCCCCCceEecCHH
Q 013449 345 VWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPY 424 (443)
Q Consensus 345 v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GR~G~~~~~~yLaSP~ 424 (443)
||++|+++| ++++|++|||.| .+||||+|+|++. .+++||+||||+||||+||||++.+++|||||+
T Consensus 303 V~~~a~~~G--------l~~~l~~aGa~i-~~pgCg~C~G~~~----~~~~ge~~vsT~NRNF~GRmG~~~~~~yLaSP~ 369 (380)
T cd01585 303 VLEMLARNG--------ALADLLAAGARI-LESACGPCIGMGQ----APPTGGVSVRTFNRNFEGRSGTKDDLVYLASPE 369 (380)
T ss_pred HHHHHHHCC--------cHHHHHHcCCEE-eCCCceeccCCCC----CCCCCcEEEEccCCCCCccCCCCCCcEEeCCHH
Confidence 999999976 599999999999 6999999999843 367999999999999999999999999999999
Q ss_pred HHHHHHhcCcc
Q 013449 425 TAAASALTGYV 435 (443)
Q Consensus 425 tvaAsAl~G~I 435 (443)
|||||||+|+|
T Consensus 370 ~vaAsAi~G~i 380 (380)
T cd01585 370 VAAAAALTGVI 380 (380)
T ss_pred HHHHHHhCccC
Confidence 99999999997
No 12
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=7.8e-129 Score=1046.92 Aligned_cols=409 Identities=33% Similarity=0.530 Sum_probs=390.2
Q ss_pred CHHHHHHHhhcCCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHHHHHHHH
Q 013449 2 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDI 81 (443)
Q Consensus 2 Tl~EKIl~~~~~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~~~~~~~ 81 (443)
||+||||++|++++.+++|++++++||++++||.|+|+++..|++ +|. .+++ |+++++++||++|+.+.+.+++|++
T Consensus 1 Tl~eKIl~~h~~~~~~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~-~g~-~~v~-~~~~~~~~DH~~~~~d~~~a~~~~~ 77 (658)
T TIGR01342 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEA-LEM-DEVK-TELAAQYCDHNMLQFDFKNADDHKF 77 (658)
T ss_pred CHHHHHHHHhhCCCCCCCCCEEEEEccEEEEeccchHHHHHHHHH-cCC-CccC-CCCeEEECCCCCCCCChhhHHHHHH
Confidence 899999999999888999999999999999999999999999965 774 6776 8999999999999999999999999
Q ss_pred HHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhccc
Q 013449 82 LRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTG 161 (443)
Q Consensus 82 ~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~tg 161 (443)
+|+|+++||+. ||+ ||+|||||++.|+ |++||++|||+||||||+||||+||||+|++|++.+|+||
T Consensus 78 l~~~a~~~gi~-~~~-----------pg~GI~Hqv~~E~-~a~PG~~ivGtDSHT~t~GalG~la~GvG~td~a~~matg 144 (658)
T TIGR01342 78 LMSAAGKFGAW-FSK-----------PGNGICHNVHKEN-FAAPGKTLLGSDSHTPTAGGLGMLAIGAGGIDIAAAMAGE 144 (658)
T ss_pred HHHHHHHhCCe-EEC-----------CCCCEEeeEchhh-ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCC
Confidence 99999999994 664 5689999999987 9999999999999999999999999999999999999999
Q ss_pred eEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCceeeeccCC
Q 013449 162 KVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPAD 241 (443)
Q Consensus 162 ~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~f~~D 241 (443)
++||+|||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||++++||+|
T Consensus 145 ~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if~~D 224 (658)
T TIGR01342 145 AFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPERATITNMGAELGATSSIFPSD 224 (658)
T ss_pred cEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEEEecCCcCccCHHHHhhhhccchhhCceEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCC-CCCccccCCCCCcccEEEEEECCCcceeeecCCCCCcccccccccCceeeeEEEeccCCCChHHHHH
Q 013449 242 GTTFKYLEDKTS-LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLA 320 (443)
Q Consensus 242 ~~t~~yl~~r~~-~~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eDl~~ 320 (443)
++|++||+.+++ ++|..+.+|+||.|+++++||||+|||+||+|++|||++|++|++|++|||||||||||||+|||++
T Consensus 225 ~~t~~yl~~~~r~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~Pd~v~~v~e~~g~~id~v~IGSCTn~~~~Dl~~ 304 (658)
T TIGR01342 225 DITEAWLAAFDREDDFVDLLADADAEYADEIEIDLSDLEPLIAEPHMPDNVVPVREIAGIEVDQVMIGSCTNGAFEDLLP 304 (658)
T ss_pred HHHHHHHHhcCCchheeeccCCCCCcEEEEEEEEccceeeeeeCCCCCCCeeEhHHhCCceeeeEEEeCCCCCChHHHHH
Confidence 999999999866 4588899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccc--ccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcE
Q 013449 321 AAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMV 398 (443)
Q Consensus 321 aA~iL~~~g~kv~--v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev 398 (443)
||+||+ |+|++ ||++|+|+|++|+.++.++| ++++|++|||.+ .+||||+|+|++. .+.++++
T Consensus 305 aA~il~--G~~v~~~v~~~v~PgS~~V~~~~~~~G--------~~~~l~~aGa~i-~~~gCg~CiG~~~----~~~~~~~ 369 (658)
T TIGR01342 305 AAKLLE--GREVHKDTEFAVAPGSKQALELIAQEG--------ALAEFLAAGANF-LEAACGACIGIGF----APASDGV 369 (658)
T ss_pred HHHHhC--CCccCCCccEEEeCCcHHHHHHHHHcC--------cHHHHHHcCCEE-eCCCccccccCCC----CCCCCcE
Confidence 999999 77776 99999999999999999976 599999999999 6999999999843 3668999
Q ss_pred EEeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCccCCcccc
Q 013449 399 CVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 441 (443)
Q Consensus 399 ~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I~dp~~~ 441 (443)
||||+||||+||||++.+++|||||+||||||++|+|+|||++
T Consensus 370 ~vst~NRNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i~dp~~l 412 (658)
T TIGR01342 370 SLRSFNRNFEGRAGIEDAKVYLASPETATAAAIAGEIIDPRDL 412 (658)
T ss_pred EEEccCCCCCccCCCCCCeEEECCHHHHHHHHHcCCcCCHHHh
Confidence 9999999999999999999999999999999999999999986
No 13
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=3.5e-128 Score=995.45 Aligned_cols=394 Identities=26% Similarity=0.361 Sum_probs=369.5
Q ss_pred HHHHHHHhhcCCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHHHHHHHHH
Q 013449 3 LTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDIL 82 (443)
Q Consensus 3 l~EKIl~~~~~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~~~~~~~~ 82 (443)
|+||||++|++++.|+|||+|++++|++|+||.|+|++++.|++ +|. +||||+|+++++||++|+++.+++++++++
T Consensus 1 ~~EKIl~~~~~~~~v~~G~~v~~~vD~~~~~D~t~p~~~~~f~~-~~~--~v~d~~~~v~~~DH~~p~~~~~~a~~~~~~ 77 (436)
T cd01581 1 LAQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGPMTRDELKE-LAC--LGFSADLVMQSFCHTAAYPKPVDVKTHRTL 77 (436)
T ss_pred ChHHHHHHhcCCCCCCCCCEEEEEcCEEEeeccchHHHHHHHHH-cCC--cccCCccEEEEcCCCCCCCCHHHHHHHHHH
Confidence 68999999999988999999999999999999999999999976 663 899999999999999999999999999999
Q ss_pred HHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhccce
Q 013449 83 RDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK 162 (443)
Q Consensus 83 r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~tg~ 162 (443)
|+|+++||| +||+. ++|||||+|+| +++||++|+|+||||||+|| ||||+|++|++.+|+||+
T Consensus 78 r~fa~~~gi-~~~~~-----------g~GI~Hqv~~e--~~~PG~~ivGtDSHT~t~ga---~a~GvG~td~a~~latG~ 140 (436)
T cd01581 78 PDFISNRGG-VALRP-----------GDGVIHSWLNR--MLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGV 140 (436)
T ss_pred HHHHHHcCC-cEECC-----------CCCeeeeeehh--hccCCceEEeeccccCCCCc---eEEeecHHHHHHHHHhCe
Confidence 999999999 57775 47999999988 58999999999999999986 899999999999999999
Q ss_pred EEeecCCEEEEEEEeeCCCCCChHHHHHH----HHHH--------hhccCCCceEEEEeccccccCChhhHhhHhhhhhh
Q 013449 163 VLLKVPPTLRFVLDGEMPDYLLAKDLILQ----IIGE--------ISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 230 (443)
Q Consensus 163 ~~~~vPetv~V~l~G~l~~gV~akDviL~----i~~~--------l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E 230 (443)
+||+|||+|+|+|+|+|++||++|||||+ |+++ +|.+|++||+|||. |+++||+++|||||||++|
T Consensus 141 ~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~--Gv~~Ls~~~R~Ti~NMa~E 218 (436)
T cd01581 141 MPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIE--GLPDLKVEQAFELTDASAE 218 (436)
T ss_pred eeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccCCcccccceEEEEC--CcccCCHhHHHHHHhhhhh
Confidence 99999999999999999999999999997 5677 77778899999997 4999999999999999999
Q ss_pred cCceeeeccCChhH-HHHhhhc----------CC-----------------CCCccccCCCCCcccEEEEEECCCc-cee
Q 013449 231 AGGKNGVVPADGTT-FKYLEDK----------TS-----------------LPYEPVYSDEKASFLSEYRFDISKL-EPL 281 (443)
Q Consensus 231 ~GA~~~~f~~D~~t-~~yl~~r----------~~-----------------~~~~~l~~D~~a~Y~~~i~iDls~l-eP~ 281 (443)
+|||++|||+|++| ++||+.| ++ ++++.+.+|+||.|+++++||||+| ||+
T Consensus 219 ~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~da~Y~~~ieiDls~l~eP~ 298 (436)
T cd01581 219 RSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRIIAMEEWLANPPLLEPDADAEYAAVIEIDLDDIKEPI 298 (436)
T ss_pred hCceEEEecCCHhHHHHHHHhCccccccccccCcccccchhHHHHHHHHHHhhcccccCCCCCceEEEEEEEhHhCCCCe
Confidence 99999999999988 8999986 21 1345678999999999999999999 999
Q ss_pred eecCCCCCcccccccccCceeeeEEEeccCCCChHHHHHHHHHHHhCCCccc-ccEEEeCCcHHHHHHHhcCCCCCCCCc
Q 013449 282 VAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK-VPTFLVPATQKVWMDVYTLPVPGSGGK 360 (443)
Q Consensus 282 Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eDl~~aA~iL~~~g~kv~-v~~~v~P~S~~v~~~a~~~g~~g~~~~ 360 (443)
||+|++|||++|++|+++++|||+||||||| |+|||++||+||| |+++. ||++|+|+|++||.+++++|
T Consensus 299 VA~P~~pdn~~~v~e~~g~~id~~~IGSCTn-r~eDl~~AA~ilk--g~~~~~vr~~v~P~S~~V~~~~~~~G------- 368 (436)
T cd01581 299 LACPNDPDDVKLLSEVAGKKIDEVFIGSCMT-NIGHFRAAAKILR--GKEFKPTRLWVAPPTRMDWAILQEEG------- 368 (436)
T ss_pred ecCCCChhhceEhHHhcCCccceEEEecCCC-CHHHHHHHHHHHc--CCCCCCCCEEEECCCHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999 9999999999999 55665 99999999999999999975
Q ss_pred hHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcEEEeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCcc
Q 013449 361 TCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYV 435 (443)
Q Consensus 361 ~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I 435 (443)
++++|.+|||.+ .+||||+|+|+ ++.+++||+||||+||||+||||+ ++++|||||++||||||+|+|
T Consensus 369 -~~~~l~~aGa~v-~~pgCg~C~G~----~~~~~~gev~vsT~NRNF~GRmG~-~~~~yLaSP~~vAAsAi~G~i 436 (436)
T cd01581 369 -YYSIFGDAGART-EMPGCSLCMGN----QARVADGATVFSTSTRNFDNRVGK-GAEVYLGSAELAAVCALLGRI 436 (436)
T ss_pred -hHHHHHHcCCEE-CCCccccccCc----CCcCCCCCEEEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCccC
Confidence 699999999999 69999999997 357899999999999999999998 899999999999999999997
No 14
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=1.3e-127 Score=1038.59 Aligned_cols=410 Identities=35% Similarity=0.576 Sum_probs=390.5
Q ss_pred CCHHHHHHHhhcCCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHHHHHHH
Q 013449 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD 80 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~~~~~~ 80 (443)
|||+||||++|++++.|++|+.+++++|++++||.|+|+++..|++ +|. .++++|.++ +++||++|..+.+.++.++
T Consensus 3 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~-~G~-~~~~~p~~~-~~~DH~~~~~~~~~~~~~~ 79 (646)
T PRK07229 3 LTLTEKILYAHLVEGELEPGEEIAIRIDQTLTQDATGTMAYLQFEA-MGL-DRVKTELSV-QYVDHNLLQADFENADDHR 79 (646)
T ss_pred cCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEeccchHHHHHHHHH-cCC-CcCCCCCeE-EECCCCCCCCChhhHHHHH
Confidence 6999999999999877999999999999999999999999999975 774 789999766 7899999999999999999
Q ss_pred HHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhcc
Q 013449 81 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT 160 (443)
Q Consensus 81 ~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~t 160 (443)
++|+|++++|| +||+ ||+|||||++.|+ |++||+++|||||||||+||||+||||||++|++.+|+|
T Consensus 80 ~l~~~a~~~gi-~~~~-----------~g~GI~Hqv~~E~-~a~PG~~ivGtDSHT~~~GalG~la~GvG~~d~~~~m~~ 146 (646)
T PRK07229 80 FLQSVAAKYGI-YFSK-----------PGNGICHQVHLER-FAFPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAG 146 (646)
T ss_pred HHHHHHHHhCC-eEEC-----------CCCCCcceehhhh-ccCCCCEEEeCCCCcCcCCcccccEEccCHHHHHHHHhc
Confidence 99999999999 5664 5689999999997 999999999999999999999999999999999999999
Q ss_pred ceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCceeeeccC
Q 013449 161 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 240 (443)
Q Consensus 161 g~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~f~~ 240 (443)
|++||++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+|||+++||+++|+|||||++|+||++++||+
T Consensus 147 g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if~~ 226 (646)
T PRK07229 147 GPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSVPERATITNMGAELGATTSIFPS 226 (646)
T ss_pred CcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECcccccccHHHHhhhhccccccCceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhcCC-CCCccccCCCCCcccEEEEEECCCcceeeecCCCCCcccccccccCceeeeEEEeccCCCChHHHH
Q 013449 241 DGTTFKYLEDKTS-LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFL 319 (443)
Q Consensus 241 D~~t~~yl~~r~~-~~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eDl~ 319 (443)
|++|++||+.+++ ++|..+.+|++|.|+++++||||+|||+||+|++|||++|++|+++.+|||||||||||+|+|||+
T Consensus 227 D~~t~~yL~~~gr~~~~~~l~~D~~a~Y~~~i~iDLs~leP~va~P~~Pd~~~pv~e~~~~~I~~a~IGSCTN~~~~Dl~ 306 (646)
T PRK07229 227 DERTREFLKAQGREDDWVELLADPDAEYDEVIEIDLSELEPLIAGPHSPDNVVPVSEVAGIKVDQVLIGSCTNSSYEDLM 306 (646)
T ss_pred cHHHHHHHHhcCCcccceeccCCCCCCeeEEEEEEccceeeeeecCCCccceeEhHHhCCCeEEEEEEecCCCCChHHHH
Confidence 9999999999866 457889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccc--ccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCc
Q 013449 320 AAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPM 397 (443)
Q Consensus 320 ~aA~iL~~~g~kv~--v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~ge 397 (443)
+||+||+ |+|++ ||++|+|+|++|+.+++++| ++++|++|||.+ .+||||+|+|+. +.+++|+
T Consensus 307 ~aA~iL~--G~~v~~~v~~~v~PgS~~V~~~l~~~G--------l~~~l~~aGa~i-~~~gCg~CiG~g----~~~~~~~ 371 (646)
T PRK07229 307 RAASILK--GKKVHPKVSLVINPGSRQVLEMLARDG--------ALADLIAAGARI-LENACGPCIGMG----QAPATGN 371 (646)
T ss_pred HHHHHhc--CCCCCCCeeEEEeCCCHHHHHHHHHCC--------cHHHHHHcCCEE-eCCCccccccCC----CCCCCCc
Confidence 9999999 77776 99999999999999999976 599999999999 699999999973 2467899
Q ss_pred EEEeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCccCCcccc
Q 013449 398 VCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 441 (443)
Q Consensus 398 v~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I~dp~~~ 441 (443)
++|||+||||+||||++.+++|||||+||||||++|+|+|||++
T Consensus 372 ~~vst~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~dp~~~ 415 (646)
T PRK07229 372 VSLRTFNRNFPGRSGTKDAQVYLASPETAAASALTGVITDPRTL 415 (646)
T ss_pred EEEEccCCCCCccCCCCCCeEEECCHHHHHHHHhcCccCChhhc
Confidence 99999999999999999999999999999999999999999986
No 15
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=3.1e-128 Score=1010.24 Aligned_cols=408 Identities=43% Similarity=0.718 Sum_probs=343.8
Q ss_pred CHHHHHHHhhcCCCC-CCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcH-------
Q 013449 2 TLTEKIFSRASEKPQ-LSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDE------- 73 (443)
Q Consensus 2 Tl~EKIl~~~~~~~~-v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~------- 73 (443)
||+||||++|++... ..+|++|+++||++|+||+|+|++++.|++ +| .++++|+++++++||++|+++.
T Consensus 1 Tl~EKI~~~h~~~~~~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~-~g--~~v~~p~~v~~~~DH~vp~~~~~~~~~~~ 77 (465)
T PF00330_consen 1 TLAEKILARHAGREVVARGGDIVYIRPDRVLLHDITGPPAFKDLRA-MG--EKVRDPDKVVLVIDHSVPADDIGSANLQI 77 (465)
T ss_dssp -HHHHHHHCCCTHCCHTTTTSEEEE--SEEEEEHHHHHHHHHHHHH-HC--HCCHSTTSEEEE--SS--BSS-HHHHHHH
T ss_pred ChHHHHHHHHhCCCccCCCCeEEEEEeceEEeecccCcccchhHHH-CC--CceecCCCceEEecCccccccccchhcch
Confidence 899999999999886 467899999999999999999999999976 56 4789999999999999999886
Q ss_pred ---HHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCC
Q 013449 74 ---RANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIG 150 (443)
Q Consensus 74 ---~~~~~~~~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG 150 (443)
++.++++++|+|++++|+.+| +.+ +.|||||+++|+|+++||++|||+||||||+||||+||||||
T Consensus 78 ~~~~n~~~~~~l~~~~~~~gi~~~-~~~----------~~GI~Hqv~~E~g~~~PG~~vvg~DSHT~t~GalGa~a~GvG 146 (465)
T PF00330_consen 78 EDARNRERYRFLRWFAKEFGIKFF-DPG----------GPGICHQVLPEEGLVLPGMTVVGTDSHTCTYGALGAFATGVG 146 (465)
T ss_dssp HHHHCHHHHHHHHHHHHHCTTEEE-ETT----------SSBSHHHHHHHHTT-STTEEEEESSTTGGGGGGGTSEEEE--
T ss_pred hhHHHHHHHHHHHHHHHHcCCcee-cCC----------CCCeeeeeehhhccccceeEEEeCCCCcchhhhceeEEeccC
Confidence 334567889999999999754 443 359999999999999999999999999999999999999999
Q ss_pred hhHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhh
Q 013449 151 NTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 230 (443)
Q Consensus 151 ~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E 230 (443)
++|++.+|+||++||+|||||+|+|+|+|++||++|||||+|+++||.+|++|++|||+|++|++||+++|||||||++|
T Consensus 147 ~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~~R~Ti~NMa~E 226 (465)
T PF00330_consen 147 STDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAVEFFGPGVESLSMDDRMTICNMAIE 226 (465)
T ss_dssp HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEEEEESGGGGGS-HHHHHHHHHCGGH
T ss_pred HHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEEEEEChhhhhcCHhhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeeeccCChhHHHHhhhcCCCC-----------CccccCCCCCcccEEEEEECCCcceeeecCCCCCcccccccc--
Q 013449 231 AGGKNGVVPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC-- 297 (443)
Q Consensus 231 ~GA~~~~f~~D~~t~~yl~~r~~~~-----------~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~-- 297 (443)
+||+++|||||++|++||+.|++.+ |+.+++|+||.|+++++||||+|||+||+|++|+|++|++|+
T Consensus 227 ~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~~D~dA~Y~~~i~iDls~leP~va~P~~P~~~~~v~e~~~ 306 (465)
T PF00330_consen 227 MGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLKSDPDAEYDKVIEIDLSELEPQVAGPHSPDNVVPVSEVAP 306 (465)
T ss_dssp HTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS--TT---SEEEEEEGGG-SSEEE-SSSTTSEEEHHHHHH
T ss_pred cCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhccCCCccCeeEEEEEEcCccccccccCCCCccccccccccc
Confidence 9999999999999999999987643 577899999999999999999999999999999999988754
Q ss_pred -----------------------------cCceeeeEEEeccCCCChHHHHHHHHHHHhC---CCcccccEEEeCCcHHH
Q 013449 298 -----------------------------KDVKIDRVYIGSCTGGKTEDFLAAAKVFLAS---GKKVKVPTFLVPATQKV 345 (443)
Q Consensus 298 -----------------------------~~~~Id~a~IGSCTng~~eDl~~aA~iL~~~---g~kv~v~~~v~P~S~~v 345 (443)
++++||+||||||||||+|||++||+||+++ +.+.+|+++|+|+|++|
T Consensus 307 ~~~~~~~~v~~~~~~kal~y~~~~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA~il~~~~~~~v~~~v~~~v~PgS~~v 386 (465)
T PF00330_consen 307 DFASILDPVEREAAEKALDYMGLKPGQELEGTKIDQAFIGSCTNGRNEDLRAAAGILKGKAVLKVAPGVKTSVVPGSRQV 386 (465)
T ss_dssp HHHHHH----CCGCC-EEEECHTTEEEEEETTBEEEEEEETTTSCTHHHHHHHHHHHHHHHCTTS-TSSEEEEE-SBHHH
T ss_pred ccccccccccccccccccccccccccccccceeeeEEEEcCCcCCCHHHHHHHHHHhhchhhccCcceeEEEEcCCCHHH
Confidence 2578999999999999999999999999965 33445999999999999
Q ss_pred HHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccccCCC-CcEEEeecCCCCCCCCCCCCCceEecCHH
Q 013449 346 WMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNE-PMVCVSTTNRNFPGRMGHKEGQIYLASPY 424 (443)
Q Consensus 346 ~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~-gev~vsT~NRNF~GR~G~~~~~~yLaSP~ 424 (443)
+.++.++| ++++|.+|||.| .+||||+|+|+++ ..+.+++ |++||||+||||+||||+..+.+|||||+
T Consensus 387 ~~~~~~~G--------l~~~l~~aG~~v-~~~gC~~C~G~~~-~~~~~~~~~~~~vst~NRNF~GR~g~~~~~~yLaSP~ 456 (465)
T PF00330_consen 387 YEQLEREG--------LLEILEEAGFEV-RGPGCGPCIGMSG-LPDVLAPLGEVCVSTSNRNFEGRMGPKDATVYLASPA 456 (465)
T ss_dssp HHHHHHTT--------HHHHHHHTTEEE---SSSGGGGTSBS---CCHCCTTEEEEESSSS-CTTTTTTTTTEEEE--HH
T ss_pred HHHHHHcC--------CchhhhccceEE-ecCCccEEECCCC-CCcccccccceEEEecCCCCCCCCCCCcCeEEECCHH
Confidence 99999875 799999999999 6999999999963 2456777 99999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 013449 425 TAAASALTG 433 (443)
Q Consensus 425 tvaAsAl~G 433 (443)
+||||||+|
T Consensus 457 ~vaA~Ai~G 465 (465)
T PF00330_consen 457 TVAASAIAG 465 (465)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 999999998
No 16
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=3.1e-125 Score=1026.52 Aligned_cols=408 Identities=29% Similarity=0.421 Sum_probs=377.7
Q ss_pred CCHHHHHHHhhcCCCC----------CCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCC
Q 013449 1 MTLTEKIFSRASEKPQ----------LSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFT 70 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~~~----------v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~ 70 (443)
|||+||||++|++++. |++||+|++++|++|+||.|+|+++..|++ +|. .++|+|. .+++||++|+
T Consensus 20 ~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~-~g~-~~v~~P~--~v~~DH~~~~ 95 (745)
T TIGR01340 20 LTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMT-CGL-PQVAVPA--SIHCDHLIVG 95 (745)
T ss_pred cCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHH-cCC-CCCCCCC--eEEeCCCCcc
Confidence 7999999999999763 689999999999999999999999999965 774 6999996 5569999987
Q ss_pred C-----cHHHH-----HHHHHHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCC
Q 013449 71 S-----DERAN-----RNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAG 140 (443)
Q Consensus 71 ~-----~~~~~-----~~~~~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~G 140 (443)
. +.+.+ ++++++|+|++++|| +||+ ||+|||||++.|+ |+.||++||||||||||+|
T Consensus 96 ~~~~~~~~~~a~~~N~e~~~~lr~~a~~~gi-~~~~-----------~g~GI~Hqv~~E~-~a~PG~~ivGtDSHT~t~G 162 (745)
T TIGR01340 96 QKGGDKDLARAIATNKEVFDFLESAGKKYGI-GFWK-----------PGSGIIHQIVLEN-YAFPGLMMLGTDSHTPNAG 162 (745)
T ss_pred ccCccccHHHHhHhHHHHHHHHHHHHHHCCC-EEEC-----------CCCCeeceEchhh-ccCCCCeEEccCCCccccc
Confidence 6 44433 779999999999999 5665 4689999999986 9999999999999999999
Q ss_pred cccccccCCChhHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhh
Q 013449 141 AFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEE 220 (443)
Q Consensus 141 alGala~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~ 220 (443)
|||+||||||++|++.+|+++++||+|||+|+|+|+|+|++||++|||||+|+++|+++|++||+|||+|+|+++||+++
T Consensus 163 alG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~vEf~G~gv~~Ls~~~ 242 (745)
T TIGR01340 163 GLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEYFGPGVESLSCTG 242 (745)
T ss_pred chheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEeCcccccCCHHH
Confidence 99999999999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHhhhhhhcCceeeeccCChhHHHHhhhcCCCC-----------CccccCCCCCcccEEEEEECCCcceeeecCCCCC
Q 013449 221 RMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPD 289 (443)
Q Consensus 221 R~ti~NMa~E~GA~~~~f~~D~~t~~yl~~r~~~~-----------~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~ 289 (443)
|||||||++|+||++||||+|++|++||+.+++++ |+.+++|+||.|+++++||||+|||+||+|++|+
T Consensus 243 R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~vA~P~~Pd 322 (745)
T TIGR01340 243 MATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYSFFKLKADEGAQYDELIEIDLSKLEPHINGPFTPD 322 (745)
T ss_pred hhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHhcccccCCCCCCeEEEEEEEccceeEeecCCCChh
Confidence 99999999999999999999999999999987653 5678899999999999999999999999999999
Q ss_pred cccccccccC--------ceeeeEEEeccCCCChHHHHHHHHHHHh---CCCcccccEEEeCCcHHHHHHHhcCCCCCCC
Q 013449 290 NRALARECKD--------VKIDRVYIGSCTGGKTEDFLAAAKVFLA---SGKKVKVPTFLVPATQKVWMDVYTLPVPGSG 358 (443)
Q Consensus 290 n~~~v~e~~~--------~~Id~a~IGSCTng~~eDl~~aA~iL~~---~g~kv~v~~~v~P~S~~v~~~a~~~g~~g~~ 358 (443)
|++|++|+++ ++|||||||||||||+|||++||+|||+ ++++.+|+++|+|+|++|+.+++++|
T Consensus 323 n~~~v~e~~~~~~~~g~~~~Id~a~IGSCTNgr~~Dl~~AA~ilk~a~~~~v~~~v~~~v~PgS~~V~~~l~~~G----- 397 (745)
T TIGR01340 323 LSTPISKFKETVQKNGWPEKLSAGLIGSCTNSSYEDMSRCASIVKDAEQAGLKPKSPFYVTPGSEQIRATLERDG----- 397 (745)
T ss_pred cccChHHhCchhhhcCCCceecEEEEEcCCCCCHHHHHHHHHHhhhhhhCCCCCCCCEEEECCCHHHHHHHHHCC-----
Confidence 9999999999 7999999999999999999999999995 45555599999999999999999976
Q ss_pred CchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCc--EEEeecCCCCCCCC-CCCCCceEecCHHHHHHHHhcCcc
Q 013449 359 GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPM--VCVSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTGYV 435 (443)
Q Consensus 359 ~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~ge--v~vsT~NRNF~GR~-G~~~~~~yLaSP~tvaAsAl~G~I 435 (443)
++++|.+|||.+ .+||||+|+|+++ +.+.+++|| +||||+||||+||| |+..+++|||||+|||||||+|+|
T Consensus 398 ---l~~~l~~aGa~v-~~~gCg~CiG~~~-~~~~~~~ge~~~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i 472 (745)
T TIGR01340 398 ---ILQTFEKFGGIV-LANACGPCIGQWD-RKDDVKKGEPNTILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSL 472 (745)
T ss_pred ---cHHHHHHcCCEE-eCCCccccccCCC-CcCccCCCCceEEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhcee
Confidence 599999999999 6999999999863 346788999 89999999999999 667799999999999999999999
No 17
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=8.3e-125 Score=966.66 Aligned_cols=379 Identities=28% Similarity=0.413 Sum_probs=350.4
Q ss_pred EEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCC-----cHHHH-----HHHHHHHHHHHHcCcceeeccc
Q 013449 29 ILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTS-----DERAN-----RNVDILRDFCMEQNIKYFYDIK 98 (443)
Q Consensus 29 ~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~-----~~~~~-----~~~~~~r~f~~~~gi~~f~~~~ 98 (443)
++|+||+|+|.+++.|++ +|. .++|+|+ ++++||++|++ +.+.+ ++++++|+|++++||+ ||+
T Consensus 1 rv~~~D~tg~~a~~~f~~-~g~-~~v~~p~--~~~~DH~~~~~~~~~~~~~~a~~~n~~~~~~~r~~a~~~gi~-~~~-- 73 (412)
T cd01584 1 RVAMQDATAQMALLQFMS-SGL-PKVAVPS--TIHCDHLIEAQVGGEKDLKRAKDINKEVYDFLASAGAKYGIG-FWK-- 73 (412)
T ss_pred CeeEEecccHHHHHHHHH-hCC-CCCCCCC--eEEeCCCccccccCCCchhhhhhhhHHHHHHHHHHHHHcCCe-EEC--
Confidence 478999999999999975 774 7999999 56799999874 54444 5778899999999995 665
Q ss_pred ccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhccceEEeecCCEEEEEEEee
Q 013449 99 DLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGE 178 (443)
Q Consensus 99 ~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~ 178 (443)
|++|||||+++|+ +++||++|+|+||||||+||||+||||||+||++.+|+++++||+|||+|+|+|+|+
T Consensus 74 ---------~g~GI~Hqv~~E~-~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vPe~i~v~l~G~ 143 (412)
T cd01584 74 ---------PGSGIIHQIVLEN-YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCPKVIGVKLTGK 143 (412)
T ss_pred ---------CCCCeeceEchhh-ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCCCEEEEEEEcc
Confidence 4589999999998 999999999999999999999999999999999999998888899999999999999
Q ss_pred CCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCceeeeccCChhHHHHhhhcCCCC---
Q 013449 179 MPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP--- 255 (443)
Q Consensus 179 l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~f~~D~~t~~yl~~r~~~~--- 255 (443)
|++||++|||+|+|+++||.+|++||+|||+|+|+++||+++|||||||++|+|||++|||+|++|++||+.+++++
T Consensus 144 l~~gV~aKDliL~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~~ 223 (412)
T cd01584 144 LSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYLKATGRAEIAD 223 (412)
T ss_pred cCCCcCHHHHHHHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHHHhcCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987754
Q ss_pred ----C--ccccCCCCCcccEEEEEECCCcceeeecCCCCCcccccccccC--------ceeeeEEEeccCCCChHHHHHH
Q 013449 256 ----Y--EPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD--------VKIDRVYIGSCTGGKTEDFLAA 321 (443)
Q Consensus 256 ----~--~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~--------~~Id~a~IGSCTng~~eDl~~a 321 (443)
| +.+++|+||.|+++++||||+|||+||+|++|+|++|++|+++ ++|||||||||||||+|||++|
T Consensus 224 ~~~~y~~~~l~~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~~g~~~~Id~a~IGSCTNgr~~Dl~~A 303 (412)
T cd01584 224 LADEFKDDLLVADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEKNGWPLDLRVGLIGSCTNSSYEDMGRA 303 (412)
T ss_pred HHHHHHhcccCCCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhccCCceeEEEEEEeccCCCChHHHHHH
Confidence 5 7889999999999999999999999999999999999999998 7999999999999999999999
Q ss_pred HHHHHh---CCCcccccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCc-
Q 013449 322 AKVFLA---SGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPM- 397 (443)
Q Consensus 322 A~iL~~---~g~kv~v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~ge- 397 (443)
|+|||+ +|+|++||++|+|+|++||++++++| ++++|.+|||.+ .+||||+|+|++.+ ..+.+|+
T Consensus 304 A~ilk~a~~~g~~v~vr~~v~PgS~~V~~~~~~~G--------l~~~l~~aG~~i-~~pgCg~C~G~~~~--~~~~~g~~ 372 (412)
T cd01584 304 ASIAKQALAHGLKCKSIFTITPGSEQIRATIERDG--------LLQTFRDAGGIV-LANACGPCIGQWDR--KDIKKGEK 372 (412)
T ss_pred HHHHhhHHhCCCCCCCcEEEeCCCHHHHHHHHHCC--------cHHHHHHcCCEE-cCCcccccccCCCC--cccCCCCc
Confidence 999983 68899999999999999999999976 599999999999 69999999999542 0354554
Q ss_pred -EEEeecCCCCCCCC-CCCCCceEecCHHHHHHHHhcCcc
Q 013449 398 -VCVSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTGYV 435 (443)
Q Consensus 398 -v~vsT~NRNF~GR~-G~~~~~~yLaSP~tvaAsAl~G~I 435 (443)
+||||+||||+||| |++.+++|||||++||||||+|++
T Consensus 373 ~~~vsT~NRNF~GR~gg~~~~~~YLaSP~~vaAsAi~G~~ 412 (412)
T cd01584 373 NTIVTSYNRNFTGRNDANPATHAFVASPEIVTAMAIAGTL 412 (412)
T ss_pred eEEEEecCCCCCCCCCCCCCceEEeCCHHHHHHHHhcccC
Confidence 89999999999998 677899999999999999999986
No 18
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=3.3e-122 Score=999.50 Aligned_cols=406 Identities=25% Similarity=0.319 Sum_probs=379.4
Q ss_pred CCHHHHHHHhhcCCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCC--cHHHHHH
Q 013449 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTS--DERANRN 78 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~--~~~~~~~ 78 (443)
+||+||||++|++. .+||++++++|++++||.|+|++++.|++ +|. .+| |.++++++||++|+. ....+++
T Consensus 35 ~TlaeKIL~~h~~~---~~g~~v~~~vD~~~~~D~t~~~~~~~f~~-~G~-~~v--p~~~v~~~DH~~~~~~g~~~n~~~ 107 (751)
T PRK11413 35 GTIAWSILSSHNTS---GNMDKLKIKFDSLASHDITFVGIIQTAKA-SGM-ERF--PLPYVLTNCHNSLCAVGGTINEDD 107 (751)
T ss_pred CCHHHHHHHHhhCC---CCCCEEEEEcceeeeehhhHHHHHHHHHH-cCC-CcC--CCCEEEECCCCCcCCCCCCccHHH
Confidence 69999999999985 48999999999999999999999999965 774 677 999999999999998 2334479
Q ss_pred HHHHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHh
Q 013449 79 VDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVL 158 (443)
Q Consensus 79 ~~~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l 158 (443)
|+++|+|||+||| +||+ |++|||||++.|. |++||++|+|+||||+ +||||+||||+|++|++.+|
T Consensus 108 ~~~~~~~a~k~Gi-~f~~-----------pg~GI~Hqv~~E~-~a~PG~~ivGtDSHT~-~GalG~la~GvGgtd~a~~m 173 (751)
T PRK11413 108 HVFGLSAAQKYGG-IFVP-----------PHIAVIHQYMREM-MAGGGKMILGSDSHTR-YGALGTMAVGEGGGELVKQL 173 (751)
T ss_pred HHHHHHHHHHcCC-cEEC-----------CCCCeECcCchhh-ccCCCcEEEeeCcCcc-cchhhhceeCCChHHHHHHH
Confidence 9999999999999 4664 5689999999887 9999999999999995 99999999999999999999
Q ss_pred ccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCC-CceEEEEeccccccCChhhHhhHhhhhhhcCceeee
Q 013449 159 GTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGA-TYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGV 237 (443)
Q Consensus 159 ~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~-~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~ 237 (443)
+++++||+|||+|+|+|+|+|++||++|||||+|+++++.+|+ +||+|||+|||+++||+++|||||||++|+||+++|
T Consensus 174 ag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R~TI~NM~~E~GA~~~i 253 (751)
T PRK11413 174 LNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNGVDVMTTETTCLSSI 253 (751)
T ss_pred hCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCccccCCHhHHhhhhhcccccCceEEE
Confidence 9999999999999999999999999999999999999999999 799999999999999999999999999999999999
Q ss_pred ccCChhHHHHhhhcCC-CCCccccCCCCCcccEEEEEECCCcceeeecCCCCCccccccccc------------------
Q 013449 238 VPADGTTFKYLEDKTS-LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECK------------------ 298 (443)
Q Consensus 238 f~~D~~t~~yl~~r~~-~~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~------------------ 298 (443)
||+|++|++||+.+++ ++|+.+.+|++|.|+++++||||+|||+||+|++|+|++|++|+.
T Consensus 254 fp~De~t~~yL~~~gr~~~~~~l~~D~~A~Yd~~ieiDLs~leP~VA~P~~Pdnv~~v~e~~~~~~~~~~~~~~~~~~~~ 333 (751)
T PRK11413 254 WQTDEEVHNWLALHGRGQDYCELNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDELNQNLTDILREVEIESERVA 333 (751)
T ss_pred ecCcHHHHHHHHhCCChhhceeccCCCCCCeeEEEEEEcccceeeecCCCChhhCcChhhcccchhhhcchhhhhhhhhh
Confidence 9999999999999875 478899999999999999999999999999999999999999984
Q ss_pred ---------------CceeeeEEEeccCCCChHHHHHHHHHHHhCCCccc---ccEEEeCCcHHHHHHHhcCCCCCCCCc
Q 013449 299 ---------------DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK---VPTFLVPATQKVWMDVYTLPVPGSGGK 360 (443)
Q Consensus 299 ---------------~~~Id~a~IGSCTng~~eDl~~aA~iL~~~g~kv~---v~~~v~P~S~~v~~~a~~~g~~g~~~~ 360 (443)
+++|||+|||||||||+|||++||+||+ |++++ ||++|+|+|++||.+++++|
T Consensus 334 ~~~~~~~~~~ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~ILk--gk~v~~~~v~~~V~PgS~~V~~~l~~~G------- 404 (751)
T PRK11413 334 HGKAKLSLLDKIENGRLKVQQGIIAGCSGGNYENVIAAANALR--GQSCGNDTFSLSVYPSSQPVFMDLAKKG------- 404 (751)
T ss_pred hhhccccccccccCCCcEeeeEEEecCCCCCHHHHHHHHHHhc--CcccCCCceeEEEECCCHHHHHHHHHcC-------
Confidence 8899999999999999999999999999 66775 99999999999999999976
Q ss_pred hHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcEEEeecCCCCCCCCCCCCCc-----eEecCHHHHHHHHhc-Cc
Q 013449 361 TCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQ-----IYLASPYTAAASALT-GY 434 (443)
Q Consensus 361 ~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GR~G~~~~~-----~yLaSP~tvaAsAl~-G~ 434 (443)
++++|.+|||.| .+||||+|+|++. .+.+|++||||+||||+||||++.++ +||+||+++||||+. |+
T Consensus 405 -~~~~l~~AGa~i-~~~gCgpCiG~~~----~~~~ge~~isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~ 478 (751)
T PRK11413 405 -VVADLMGAGAII-RTAFCGPCFGAGD----TPANNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGY 478 (751)
T ss_pred -cHHHHHHcCCEE-CCCchhhhhCcCC----cCCCCCEEEeecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCc
Confidence 599999999999 6999999999842 47899999999999999999998886 788889999999999 69
Q ss_pred cCCccccc
Q 013449 435 VTDPREFL 442 (443)
Q Consensus 435 I~dp~~~~ 442 (443)
|+|||++.
T Consensus 479 it~p~~~~ 486 (751)
T PRK11413 479 LTSATELD 486 (751)
T ss_pred cCCHHHcc
Confidence 99999873
No 19
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=1.4e-121 Score=927.80 Aligned_cols=351 Identities=32% Similarity=0.529 Sum_probs=334.7
Q ss_pred EEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHHHHHHHHHHHHHHHcCcceeecccccCCcccCCCC
Q 013449 30 LMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDY 109 (443)
Q Consensus 30 ~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~~~~~~~~r~f~~~~gi~~f~~~~~~~~~~~~ppg 109 (443)
+|+||.|+|++++ |.+ +| ..+||+|+|+++++||++|+.+.+.+++++++|+|+|++||+ ||+. +
T Consensus 2 ~~~hd~t~p~~~~-~~~-~g-~~~v~~p~~~~~~~DH~vp~~~~~~~~~~~~lr~~ak~~gi~-~~~~-----------g 66 (363)
T cd01582 2 CMTHDNSWPVALK-FMS-IG-ATKIHNPDQIVMTLDHDVQNKSEKNLKKYKNIESFAKKHGID-FYPA-----------G 66 (363)
T ss_pred eeEEeCcHHHHHH-HHH-cC-CCccCCCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhCCe-EECC-----------C
Confidence 5889999999999 544 67 479999999999999999999999999999999999999995 6764 4
Q ss_pred CeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHH
Q 013449 110 KGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLI 189 (443)
Q Consensus 110 ~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDvi 189 (443)
+|||||+++|+|+++||++|+|+||||||+||||+||||||+||++.+|+||++|++|||+|+|+|+|+|++||++|||+
T Consensus 67 ~GI~Hqv~~E~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vPe~i~v~l~G~l~~gV~aKDvi 146 (363)
T cd01582 67 RGIGHQIMIEEGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIPPVAKVELKGQLPKGVTGKDVI 146 (363)
T ss_pred CCEEEEeccccCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCCCEEEEEEecccCCCCCHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCceeeeccCChhHHHHhhhcCCCCCccccCCCCCcccE
Q 013449 190 LQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLS 269 (443)
Q Consensus 190 L~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~f~~D~~t~~yl~~r~~~~~~~l~~D~~a~Y~~ 269 (443)
|+|+++|+.+|++||+|||+||++++||+++|||||||++|+||+++|||+| ++
T Consensus 147 L~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D--------------------------~~ 200 (363)
T cd01582 147 VALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD--------------------------AK 200 (363)
T ss_pred HHHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC--------------------------ce
Confidence 9999999999999999999999999999999999999999999999999999 67
Q ss_pred EEEEECCCcceeeecCCCCCcccccccc--cCceeeeEEEeccCCCChHHHHHHHHHHHhCCCc-------cc--ccEEE
Q 013449 270 EYRFDISKLEPLVAKPHSPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKK-------VK--VPTFL 338 (443)
Q Consensus 270 ~i~iDls~leP~Va~P~~p~n~~~v~e~--~~~~Id~a~IGSCTng~~eDl~~aA~iL~~~g~k-------v~--v~~~v 338 (443)
+++||||+|||+||+|++|+|++|++++ ++++|||||||||||||+|||++||+|||+ +| ++ ||++|
T Consensus 201 ~~~iDls~leP~va~P~~p~~~~~~~~~~~~~~~id~~~IGSCTngr~~Dl~~aA~il~g--k~~~~~~~~v~~~Vr~~v 278 (363)
T cd01582 201 HLILDLSTLSPYVSGPNSVKVSTPLKELEAQNIKINKAYLVSCTNSRASDIAAAADVVKG--KKEKNGKIPVAPGVEFYV 278 (363)
T ss_pred EEEEEcccceeeeeCCCCCCCcCCHHHhhhcCceEeEEEEEcCCCCChHHHHHHHHHHhC--ccccccCcccCCCceEEE
Confidence 9999999999999999999999999999 589999999999999999999999999994 44 65 99999
Q ss_pred eCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcEEEeecCCCCCCCCCCCCCce
Q 013449 339 VPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQI 418 (443)
Q Consensus 339 ~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GR~G~~~~~~ 418 (443)
+|+|++||++|+++| ++++|.+|||.| .+||||+|+|++ ++.+++||+||||+||||+||||++++++
T Consensus 279 ~PgS~~V~~~a~~~G--------l~~~l~~aGa~i-~~pgCg~C~G~~---~~~~~~ge~~vsT~NRNF~GR~G~~~~~~ 346 (363)
T cd01582 279 AAASSEVQAAAEKNG--------DWQTLLEAGATP-LPAGCGPCIGLG---QGLLEPGEVGISATNRNFKGRMGSTEALA 346 (363)
T ss_pred eCCCHHHHHHHHHcC--------cHHHHHHCCCEE-ECCCCeeccCCC---CCCCCCCCEEEEecCCCCCcCCCCCCCcE
Confidence 999999999999976 599999999999 699999999995 45788999999999999999999999999
Q ss_pred EecCHHHHHHHHhcCcc
Q 013449 419 YLASPYTAAASALTGYV 435 (443)
Q Consensus 419 yLaSP~tvaAsAl~G~I 435 (443)
|||||++||||||+|+|
T Consensus 347 yLaSP~~vaAsAi~G~i 363 (363)
T cd01582 347 YLASPAVVAASAISGKI 363 (363)
T ss_pred EECCHHHHHHHHhCccC
Confidence 99999999999999987
No 20
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=1e-119 Score=980.97 Aligned_cols=403 Identities=26% Similarity=0.358 Sum_probs=376.7
Q ss_pred CCHHHHHHHhhcCCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHHHHHHH
Q 013449 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD 80 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~~~~~~ 80 (443)
|||+||||++|+|++.|+|||+|++++|.+++||.|+|++++.|++ +|. ++|+|+++++++||++|++++..+++|+
T Consensus 371 ~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~~~-lg~--~~~~~d~v~~~~dH~~p~~~~~~a~~~~ 447 (835)
T PRK09238 371 FTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDTTGPMTRDELKD-LAC--LGFSADLVMQSFCHTAAYPKPVDVKTHH 447 (835)
T ss_pred ccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeeccchHHHHHHHHH-cCC--cccCCCcEEEEccCCCCCCCHHHHHHHH
Confidence 6999999999999988999999999999999999999999999976 773 8999999999999999999999999999
Q ss_pred HHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhcc
Q 013449 81 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT 160 (443)
Q Consensus 81 ~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~t 160 (443)
.+|+|++++|+. ||+. |+|||||+|. ++++||++++|+||||||+|| ||||+|++|++.+|+|
T Consensus 448 ~lr~Fa~~~Gi~-~~~p-----------G~GI~H~vl~--~~~~Pg~vivG~DSHT~t~ga---~a~G~Gs~~vA~a~at 510 (835)
T PRK09238 448 TLPDFIMNRGGV-SLRP-----------GDGVIHSWLN--RMLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAAT 510 (835)
T ss_pred HHHHHHHHcCCc-EeCC-----------CCCeeeeccc--ccccCCeEEEecccccCCCCc---eEeccchHHHHHHHhh
Confidence 999999999996 4654 5899999986 599999999999999999997 7899999999999999
Q ss_pred ceEEeecCCEEEEEEEeeCCCCCChHHHHHHH----HHH--------hhccCCCceEEEEeccccccCChhhHhhHhhhh
Q 013449 161 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQI----IGE--------ISVAGATYKSMEFVGTTVERLSMEERMTLCNMV 228 (443)
Q Consensus 161 g~~~~~vPetv~V~l~G~l~~gV~akDviL~i----~~~--------l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa 228 (443)
|++||+|||||+|+|+|+|++||++|||||+| +++ ++.++++||+|||. |+++||+++|||||||+
T Consensus 511 G~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~~g~~~~~gr~lEf~--Gv~~Lsve~R~Tl~NMa 588 (835)
T PRK09238 511 GVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEIE--GLPDLKVEQAFELTDAS 588 (835)
T ss_pred CceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccccCCccceeeeEEEEc--CcccCCHHHHHhHhhcc
Confidence 99999999999999999999999999999999 664 66677899999996 59999999999999999
Q ss_pred hhcCceeeecc-CChhHHHHhhhc----------CCC-----------------CCccccCCCCCcccEEEEEECCCc-c
Q 013449 229 VEAGGKNGVVP-ADGTTFKYLEDK----------TSL-----------------PYEPVYSDEKASFLSEYRFDISKL-E 279 (443)
Q Consensus 229 ~E~GA~~~~f~-~D~~t~~yl~~r----------~~~-----------------~~~~l~~D~~a~Y~~~i~iDls~l-e 279 (443)
+|+||++++|| +|++|++||+.+ ++. .++.+.+|+||+|+++++||||+| |
T Consensus 589 ~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~ll~aD~dA~Y~~vieIDLs~i~e 668 (835)
T PRK09238 589 AERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAMEEWLANPELLEADADAEYAAVIEIDLAEIKE 668 (835)
T ss_pred HhhCceeceecCChHHHHHHHHhcccccccccccCcccccchhHHHHHHHHHHhhcccccCCCCCceEEEEEEEhhhcCC
Confidence 99999999999 889999999976 221 234578999999999999999999 9
Q ss_pred eeeecCCCCCcccccccccCceeeeEEEeccCCCChHHHHHHHHHHHhCCCcc--cccEEEeCCcHHHHHHHhcCCCCCC
Q 013449 280 PLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVPGS 357 (443)
Q Consensus 280 P~Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eDl~~aA~iL~~~g~kv--~v~~~v~P~S~~v~~~a~~~g~~g~ 357 (443)
|+||+|++|||+++++|+++.+|||||||||| ||++||++||+||| |+++ +||++|+|+|++|+.|+.++|
T Consensus 669 P~VA~P~~Pdnv~~lsev~g~~Id~vfIGSCT-gr~~DlraAA~ILk--g~~v~~~vr~~V~P~S~~v~~~l~~eG---- 741 (835)
T PRK09238 669 PILACPNDPDDVRLLSEVAGTKIDEVFIGSCM-TNIGHFRAAGKLLE--GKKGQLPTRLWVAPPTKMDADQLTEEG---- 741 (835)
T ss_pred CeecCCCChhhheEHHHhcCCccCeEEEEcCC-CCHHHHHHHHHHHc--CCccCCCCCEEEECCCHHHHHHHHHcC----
Confidence 99999999999999999999999999999999 99999999999999 5555 499999999999999999976
Q ss_pred CCchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcEEEeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCccCC
Q 013449 358 GGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTD 437 (443)
Q Consensus 358 ~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I~d 437 (443)
++++|.+|||.+ ..||||+|+|+ ++++++|++||||+||||+||||+ ++++||+||++|||||++|+|+|
T Consensus 742 ----~~~~l~~AGa~v-~~pGCg~C~G~----~~~~~~ge~~vSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I~~ 811 (835)
T PRK09238 742 ----YYSIFGKAGARI-EMPGCSLCMGN----QARVADGATVFSTSTRNFPNRLGK-GANVYLGSAELAAVCALLGRIPT 811 (835)
T ss_pred ----cHHHHHHcCCEE-CCCcchhhhCc----cCcCCCCCEEEeecCCCCCCCCCC-CCCeEeCCHHHHHHHHhCCccCC
Confidence 599999999999 69999999997 358899999999999999999996 89999999999999999999999
Q ss_pred ccccc
Q 013449 438 PREFL 442 (443)
Q Consensus 438 p~~~~ 442 (443)
||+|+
T Consensus 812 p~e~~ 816 (835)
T PRK09238 812 VEEYQ 816 (835)
T ss_pred HHHHH
Confidence 99985
No 21
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=6e-119 Score=972.36 Aligned_cols=403 Identities=26% Similarity=0.378 Sum_probs=374.5
Q ss_pred CCHHHHHHHhhcCCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHHHHHHH
Q 013449 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD 80 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~~~~~~ 80 (443)
|||+||||++|+|++.|+|||+|++++|.+++||.|+|++++.|++ ++. ++|+|+++++++||++|++++..+++|+
T Consensus 372 ~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~~~-l~~--~vfdpd~v~~~~DH~~p~~~~~~a~~~~ 448 (844)
T TIGR00117 372 FTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDELKE-LAC--LGFSADLVLQSFCHTAAYPKPVDVNTHH 448 (844)
T ss_pred hhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeeccccHHHHHHHHH-hCC--ceECCCcEEEEeCCCCCCCCHHHHHHHH
Confidence 6999999999999988999999999999999999999999999976 663 8999999999999999999999999999
Q ss_pred HHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhcc
Q 013449 81 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT 160 (443)
Q Consensus 81 ~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~t 160 (443)
.+|+|++++|+. ||+. |+|||||+|+| +++||++++|+||||||+ +| ||||+|++|++.+|+|
T Consensus 449 ~lr~Fa~~~Gi~-~~~p-----------G~GI~Hqvl~e--~~~PG~vivG~DSHT~t~--~G-~a~G~Gs~dvA~a~at 511 (844)
T TIGR00117 449 TLPDFIMNRGGV-ALRP-----------GDGVIHSWLNR--MLLPDTVGTGGDSHTRFP--LG-ISFPAGSGLVAFAAAT 511 (844)
T ss_pred HHHHHHHHcCCe-EECC-----------CCceecccchh--hccCCeeEEecccccccc--ce-EEecccHHHHHHHHHh
Confidence 999999999995 6664 58999999977 689999999999999997 57 9999999999999999
Q ss_pred ceEEeecCCEEEEEEEeeCCCCCChHHHHHHH----H--HHhhc------cCCCceEEEEeccccccCChhhHhhHhhhh
Q 013449 161 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQI----I--GEISV------AGATYKSMEFVGTTVERLSMEERMTLCNMV 228 (443)
Q Consensus 161 g~~~~~vPetv~V~l~G~l~~gV~akDviL~i----~--~~l~~------~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa 228 (443)
|++||+|||+|+|+|+|+|++||++|||+|+| + +.|+. +|++|++|||.| +++||+++|||||||+
T Consensus 512 G~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g~~ng~~gk~lEf~G--i~~Lsve~R~Ti~NMa 589 (844)
T TIGR00117 512 GVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRILEIEG--LPDLKVEQAFELTDAS 589 (844)
T ss_pred CeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeecccccccccccceEEEECC--cccCCHhHHHHHhhhh
Confidence 99999999999999999999999999999999 4 44433 678999999974 9999999999999999
Q ss_pred hhcCceeeeccCCh-hHHHHhhhc----------CCC-----------------CCccccCCCCCcccEEEEEECCCc-c
Q 013449 229 VEAGGKNGVVPADG-TTFKYLEDK----------TSL-----------------PYEPVYSDEKASFLSEYRFDISKL-E 279 (443)
Q Consensus 229 ~E~GA~~~~f~~D~-~t~~yl~~r----------~~~-----------------~~~~l~~D~~a~Y~~~i~iDls~l-e 279 (443)
+|+||++++|++|+ +|++||+.+ ++. .++.+.+|+||+|+++++||||+| |
T Consensus 590 aE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~ll~aD~dA~Y~~vieIDLs~i~E 669 (844)
T TIGR00117 590 AERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADADAEYAAVIEIDLAEIKE 669 (844)
T ss_pred hhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhhhHHHHHHHHHHhhcccccCCCCCceEEEEEEEhHhCCC
Confidence 99999999999996 489999985 321 234578999999999999999999 9
Q ss_pred eeeecCCCCCcccccccccCceeeeEEEeccCCCChHHHHHHHHHHHhCCCccc-ccEEEeCCcHHHHHHHhcCCCCCCC
Q 013449 280 PLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK-VPTFLVPATQKVWMDVYTLPVPGSG 358 (443)
Q Consensus 280 P~Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eDl~~aA~iL~~~g~kv~-v~~~v~P~S~~v~~~a~~~g~~g~~ 358 (443)
|+||+|++|||++|++|+++.+|||||||||| +|++||++||+||| |+++. ||++|+|+|++|+.++.++|
T Consensus 670 P~VA~P~~PDnv~pvsev~g~~IdqVfIGSCT-~n~~DlraAA~ILk--g~~v~~vrl~V~P~S~~V~~~l~~eG----- 741 (844)
T TIGR00117 670 PILAAPNDPDDVRPLSEVQGDKIDEVFIGSCM-TNIGHFRAAGKILD--AAGQLPTRLWVAPPTRMDEQQLTEEG----- 741 (844)
T ss_pred CeeCCCCChhhccChHhhcCcccceEEEEcCC-CCHHHHHHHHHHHc--CCCcCCCCEEEECCCHHHHHHHHHcC-----
Confidence 99999999999999999999999999999999 89999999999999 55665 99999999999999999976
Q ss_pred CchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcEEEeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCccCCc
Q 013449 359 GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDP 438 (443)
Q Consensus 359 ~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I~dp 438 (443)
++++|.+|||.+ ..||||+|+|+ ++++++|++|+||+||||+||||+ ++++|||||++||||||+|+|+||
T Consensus 742 ---~~~~f~~AGa~i-~~pGCg~C~Gn----~~~v~~Ge~vvSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I~dp 812 (844)
T TIGR00117 742 ---YYSIFGAAGART-EIPGCSLCMGN----QARVADGATVFSTSTRNFPNRMGT-GANVYLGSAELAAVCALLGKIPTP 812 (844)
T ss_pred ---cHHHHHHcCCEE-CCCccccccCC----CCcCCCCCEEEeccCCCCCCCCCC-CccEEeCCHHHHHHHHhCcccCCH
Confidence 599999999999 69999999997 457899999999999999999997 789999999999999999999999
Q ss_pred cccc
Q 013449 439 REFL 442 (443)
Q Consensus 439 ~~~~ 442 (443)
|+|+
T Consensus 813 ~e~~ 816 (844)
T TIGR00117 813 EEYQ 816 (844)
T ss_pred HHHH
Confidence 9985
No 22
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=5.9e-117 Score=955.12 Aligned_cols=405 Identities=24% Similarity=0.342 Sum_probs=369.0
Q ss_pred CCHHHHHHHhhcCC-CCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHHHHHH
Q 013449 1 MTLTEKIFSRASEK-PQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNV 79 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~-~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~~~~~ 79 (443)
|||+||||++|+|+ +.|+|||+|++++|.+++||.|+|++++.|++ ++. .+++|+++++++||++|.+++...++|
T Consensus 444 ~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~TGPmt~~efke-l~~--~~~dpdkv~~~fDH~ap~p~~~~~~~~ 520 (938)
T PLN00094 444 FTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDTTGPMTRDELKD-LAC--LGFSADLVMQSFCHTAAYPKPVDVVTH 520 (938)
T ss_pred hhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeeccccHHHHHHHHH-hcc--cccCcccEEEEccCCCCCCCHHHHHHH
Confidence 69999999999998 46999999999999999999999999999976 653 478999999999999999999999999
Q ss_pred HHHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhc
Q 013449 80 DILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLG 159 (443)
Q Consensus 80 ~~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~ 159 (443)
+.+|+|++++|+. ||+. |+|||||+|+| +++||++++|+|||||+.+++ +||.|++|++.+|+
T Consensus 521 ~~lr~Fa~~~Gi~-~~~~-----------G~GI~HqvL~e--~~lPG~vivGgDSHT~fa~GI---sf~aGsgdvA~a~A 583 (938)
T PLN00094 521 HTLPDFIRNRGGV-SLRP-----------GDGVIHSWLNR--MLLPDTVGTGGDSHTRFPIGI---SFPAGSGLVAFGAA 583 (938)
T ss_pred HHHHHHHHHcCCE-EECC-----------CCceecccccc--cccCCeEEEeecCCCCCcccc---cCCCcHHHHHHHHH
Confidence 9999999999996 7765 47999999876 999999999999999977654 56889999999999
Q ss_pred cceEEeecCCEEEEEEEeeCCCCCChHHHHHHHH------HHhh------ccCCCceEEEEeccccccCChhhHhhHhhh
Q 013449 160 TGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQII------GEIS------VAGATYKSMEFVGTTVERLSMEERMTLCNM 227 (443)
Q Consensus 160 tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~------~~l~------~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NM 227 (443)
||++||+|||+|+|+|+|+|++||++|||||+|+ ++|+ .++++||+||| +|+++||+++|||||||
T Consensus 584 TG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k~gk~~~f~GkilEf--~Gl~~Lsve~R~TL~NM 661 (938)
T PLN00094 584 TGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVFSGRILEI--EGLPHLKCEQAFELSDA 661 (938)
T ss_pred hCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhhcCccceEeeEEEEe--CCcccCCHhHHHHHHhH
Confidence 9999999999999999999999999999999996 4444 34458899999 56999999999999999
Q ss_pred hhhcCceeeeccCC-hhHHHHhhh----------cCC-----------------CCCccccCCCCCcccEEEEEECCCc-
Q 013449 228 VVEAGGKNGVVPAD-GTTFKYLED----------KTS-----------------LPYEPVYSDEKASFLSEYRFDISKL- 278 (443)
Q Consensus 228 a~E~GA~~~~f~~D-~~t~~yl~~----------r~~-----------------~~~~~l~~D~~a~Y~~~i~iDls~l- 278 (443)
++|+||++++|++| ++|++||+. +++ +.++.+.+|+||+|+++|+||||+|
T Consensus 662 aaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt~~~ri~~~e~w~~~~~ll~aD~dA~Y~~vieIDLs~I~ 741 (938)
T PLN00094 662 SAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTLERRIARMQQWLADPELLEADPDAEYAAVIEIDMDEIK 741 (938)
T ss_pred HHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhhHHHHHHHHHHHHhhcccccCCCCCceEEEEEEEhHHCC
Confidence 99999999999999 478999986 221 1234578999999999999999999
Q ss_pred ceeeecCCCCCcccccccccCceeeeEEEeccCCCChHHHHHHHHHHHhCCCcccccEEEeCCcHHHHHHHhcCCCCCCC
Q 013449 279 EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG 358 (443)
Q Consensus 279 eP~Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eDl~~aA~iL~~~g~kv~v~~~v~P~S~~v~~~a~~~g~~g~~ 358 (443)
||+||+|++|||+++++|+++++|||||||||| +|++||++||+||++++.+.+||++|+|+|++||.|+.++|
T Consensus 742 EP~VA~P~~PDnv~~lsev~g~kIDqVFIGSCT-grieDlraAA~ILkGrkv~~~Vrl~V~P~Sr~V~~ql~~eG----- 815 (938)
T PLN00094 742 EPILCAPNDPDDARLLSEVTGDKIDEVFIGSCM-TNIGHFRAAGKLLNDNLSQLPTRLWVAPPTKMDEAQLKAEG----- 815 (938)
T ss_pred CCeEeCCCChhhceECchhcCCccCeEEEEeCC-CCHHHHHHHHHHHcCCCCCCCCcEEEeCCCHHHHHHHHHcC-----
Confidence 999999999999999999999999999999999 79999999999999432333499999999999999999976
Q ss_pred CchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcEEEeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCccCCc
Q 013449 359 GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDP 438 (443)
Q Consensus 359 ~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I~dp 438 (443)
++++|.+|||.+ ..||||+|+|+ ++++++|++||||+||||+||||+ ++++||+||++||||||+|+|+||
T Consensus 816 ---~~~if~~AGA~i-~~PGCg~CmG~----~g~l~~Gev~vSTSNRNF~GRmG~-~a~VYLaSP~~AAASAi~G~Itdp 886 (938)
T PLN00094 816 ---YYSTFGTVGART-EMPGCSLCMGN----QARVAEKSTVVSTSTRNFPNRLGK-GANVYLASAELAAVAAILGRLPTV 886 (938)
T ss_pred ---cHHHHHhCCCEE-cCCccccccCC----CCcCCCCCeEEeecCCCCCCCCCC-CccEEecCHHHHHHHHhCCccCCH
Confidence 589999999999 69999999997 357899999999999999999997 799999999999999999999999
Q ss_pred cccc
Q 013449 439 REFL 442 (443)
Q Consensus 439 ~~~~ 442 (443)
|+|+
T Consensus 887 re~l 890 (938)
T PLN00094 887 EEYL 890 (938)
T ss_pred HHHH
Confidence 9985
No 23
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=3.6e-115 Score=895.43 Aligned_cols=378 Identities=35% Similarity=0.588 Sum_probs=360.9
Q ss_pred EEEEcCCChHHHHHHHHHHhCCCC-cccCCCcEEEeecCCCCCCcHHHHHHHHHHHHHHHHcCcceeecccccCCcccCC
Q 013449 29 ILMTHDVCGPGSFGIFKKEFGENA-KVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANP 107 (443)
Q Consensus 29 ~~~~hD~t~p~~~~~~~~~~g~~~-~v~~p~~v~~~~DH~v~~~~~~~~~~~~~~r~f~~~~gi~~f~~~~~~~~~~~~p 107 (443)
++|+||.|+|++++.|++ ++. . +||||+|+++++||++|+++.+.+++++++|+|+|++||+ ||+.
T Consensus 1 ~v~~hD~tgp~a~~~~~~-~~~-~~~v~~p~~v~~~~DH~~p~~~~~~~~~~~~lr~f~~~~gi~-~~~~---------- 67 (389)
T cd01351 1 RVMLQDATGPMAMKAFEI-LAA-LGKVADPSQIACVHDHAVQLEKPVNNEGHKFLSFFAALQGIA-FYRP---------- 67 (389)
T ss_pred CEEEEecchHHHHHHHHH-cCC-CCCCCCcccEEEEECCCCCCCChhHHHHHHHHHHHHHHcCCc-EECC----------
Confidence 378999999999999965 663 5 8999999999999999999999999999999999999984 6664
Q ss_pred CCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHH
Q 013449 108 DYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKD 187 (443)
Q Consensus 108 pg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akD 187 (443)
++|||||++.|+ +++||++++|+||||||+||||+||||+|++|++.+|+||++|+++|++++|+|+|+|++||++||
T Consensus 68 -g~Gi~H~~~~E~-~~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP~~~~v~l~G~l~~~V~~kD 145 (389)
T cd01351 68 -GVGIIHQIMVEN-LALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKPEVVGVNLTGKLSPGVTGKD 145 (389)
T ss_pred -CCCeECcccccc-cCCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCCcEEEEEEecccCCCceeeH
Confidence 589999999887 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCceeeeccCChhHHHHhhhcCCC--------CCccc
Q 013449 188 LILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSL--------PYEPV 259 (443)
Q Consensus 188 viL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~f~~D~~t~~yl~~r~~~--------~~~~l 259 (443)
++|+|++.|+.+|++|+++||.|+++++||+++|+|||||++|+||++++||+|++|++||+.|++. +|+.+
T Consensus 146 l~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl~~~~~~~~~~~~~~~~~~l 225 (389)
T cd01351 146 VVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWLEATGRPLLKNLWLAFPEEL 225 (389)
T ss_pred HHHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHHHhcCCchhhHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999998876 57788
Q ss_pred cCCCCCcccEEEEEECCCcceeeecCCCCCcccccccccCceeeeEEEeccCCCChHHHHHHHHHHHhCCCccc--ccEE
Q 013449 260 YSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTF 337 (443)
Q Consensus 260 ~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eDl~~aA~iL~~~g~kv~--v~~~ 337 (443)
.+|+||.|+++++||||+|||+|++|++|+|++|++++++.+|||||||||||+|++||++||+||| |+|++ ||++
T Consensus 226 ~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~~~Id~v~IGSCtn~~~~dl~~aA~ilk--gk~v~~~v~~~ 303 (389)
T cd01351 226 LADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEGTKIDQVLIGSCTNNRYSDMLAAAKLLK--GAKVAPGVRLI 303 (389)
T ss_pred CCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccCCceeEEEEecCCCCCHHHHHHHHHHHc--CCcCCCCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 66776 9999
Q ss_pred EeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcEEEeecCCCCCCCCCCCCCc
Q 013449 338 LVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQ 417 (443)
Q Consensus 338 v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GR~G~~~~~ 417 (443)
|+|+|++||+++.++| ++++|++||+.+ .+||||+|+|++ +|.+++|++++||+||||+||||+..++
T Consensus 304 v~P~S~~v~~~a~~~G--------l~~~l~~aG~~i-~~~gC~~C~G~~---~~~~~~g~~~vst~nRNF~GR~g~~~~~ 371 (389)
T cd01351 304 VTPGSRMVYATLSREG--------YYEILVDSGARI-LPPGCGPCMGNG---ARLVADGEVGVSSGNRNFPGRLGTYERH 371 (389)
T ss_pred EECCCHHHHHHHHHcC--------hHHHHHHCCCEE-eCCCCcccCCCC---CCcCCCCcEEEEeecCCCccccCCCCCc
Confidence 9999999999999875 699999999999 699999999994 5688999999999999999999998899
Q ss_pred eEecCHHHHHHHHhcCcc
Q 013449 418 IYLASPYTAAASALTGYV 435 (443)
Q Consensus 418 ~yLaSP~tvaAsAl~G~I 435 (443)
+|||||+|||||||+|+|
T Consensus 372 ~yLaSP~~vaAsAl~G~i 389 (389)
T cd01351 372 VYLASPELAAATAIAGKI 389 (389)
T ss_pred eEECCHHHHHHHHhcCcC
Confidence 999999999999999987
No 24
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=9.7e-115 Score=948.04 Aligned_cols=411 Identities=26% Similarity=0.390 Sum_probs=360.7
Q ss_pred CCCCeEEEeeeEEEEcCCChHHHHHHHHH------HhCCCCcccCCC-cEEEeecCCCCCCcH----HHHHHHHHHHHHH
Q 013449 18 SPGDNVWVNVDILMTHDVCGPGSFGIFKK------EFGENAKVWDRE-KIVIIPDHYIFTSDE----RANRNVDILRDFC 86 (443)
Q Consensus 18 ~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~------~~g~~~~v~~p~-~v~~~~DH~v~~~~~----~~~~~~~~~r~f~ 86 (443)
++|..+..++|++++||+||.+++-.|+. ++|.+++..+|. ++.+++||++++... ...+|+ .++|.
T Consensus 75 ~~~~ei~f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~--~~e~~ 152 (888)
T PRK09277 75 KPDREIPFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNV--ELEFE 152 (888)
T ss_pred CCCceeeeccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHH--HHHHH
Confidence 57889999999999999999554444322 246566678998 699999999987632 222332 23444
Q ss_pred HHcCccee--ecccccCCcccCCCCCeeeeeeecc----------cc--eecCCceEEcCCCCccCCCcccccccCCChh
Q 013449 87 MEQNIKYF--YDIKDLGNFKANPDYKGVCHIALAQ----------EG--HCRPGEVLLGTDSHTCTAGAFGQFATGIGNT 152 (443)
Q Consensus 87 ~~~gi~~f--~~~~~~~~~~~~ppg~GI~Hq~l~e----------~~--~~~PG~~vvg~DSHT~t~GalGala~GvG~t 152 (443)
|+...+.| |....++|+++.|||+|||||+..| .| ++.| ++||||||||||+||||+||||||++
T Consensus 153 rN~er~~fLkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~P-dtlVGtDSHT~t~GalG~la~GVGg~ 231 (888)
T PRK09277 153 RNEERYQFLKWGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYP-DTLVGTDSHTTMINGLGVLGWGVGGI 231 (888)
T ss_pred hCHHHHhHHHHHHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeecc-ceEEecCCCCCCCCcccccEEccCHH
Confidence 44443334 7788889999999999999999999 77 8889 69999999999999999999999999
Q ss_pred HHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcC
Q 013449 153 DAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAG 232 (443)
Q Consensus 153 d~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~G 232 (443)
|++++|++|++||++||+|+|+|+|+|++|||||||||+|+++||.+|++||+|||+|+|+++||+++|||||||++|+|
T Consensus 232 Eaeaam~g~~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~G 311 (888)
T PRK09277 232 EAEAAMLGQPSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYG 311 (888)
T ss_pred HHHHHHhcCcEEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccCChhHHHHhhhcCCCC--------Cc----ccc-CCCCCcccEEEEEECCCcceeeecCCCCCcccccccccC
Q 013449 233 GKNGVVPADGTTFKYLEDKTSLP--------YE----PVY-SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD 299 (443)
Q Consensus 233 A~~~~f~~D~~t~~yl~~r~~~~--------~~----~l~-~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~ 299 (443)
|++||||+|++|++||+.+++.+ |. .+. +|++|.|+++++||||+|+|+||+|++|+|++|++|+.+
T Consensus 312 At~g~fp~De~T~~YL~~tgr~~~~v~~~e~y~ka~~~~~~~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~ 391 (888)
T PRK09277 312 ATCGFFPIDEETLDYLRLTGRDEEQVALVEAYAKAQGLWRDPLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKE 391 (888)
T ss_pred ceEEEecCChhHHHHHHhcCCChHHHHHHHHHHHHHhhhccCCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCc
Confidence 99999999999999999987654 31 122 599999999999999999999999999999999999887
Q ss_pred c----------------------------eeeeEEEeccCCCChHHHHHHHHHHHh----CCCccc--ccEEEeCCcHHH
Q 013449 300 V----------------------------KIDRVYIGSCTGGKTEDFLAAAKVFLA----SGKKVK--VPTFLVPATQKV 345 (443)
Q Consensus 300 ~----------------------------~Id~a~IGSCTng~~eDl~~aA~iL~~----~g~kv~--v~~~v~P~S~~v 345 (443)
. +|++||||||||+|+||+++||+||++ +|+|++ ||++|+|+|++|
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V 471 (888)
T PRK09277 392 AFAKSAELGVQGFGLDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPGSKVV 471 (888)
T ss_pred chhhhchhhhhhhhhhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeCCCHHH
Confidence 5 678999999999999999999999964 499997 999999999999
Q ss_pred HHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccc----cCCCCc---EEEeecCCCCCCCCCCCCCce
Q 013449 346 WMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA----RMNEPM---VCVSTTNRNFPGRMGHKEGQI 418 (443)
Q Consensus 346 ~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g----~l~~ge---v~vsT~NRNF~GR~G~~~~~~ 418 (443)
+.++.++| ++++|.++||.+ .+||||+|+|++++... .+.+++ +||||+||||+||||+..+.+
T Consensus 472 ~~~l~~~G--------l~~~l~~aGf~i-~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~ 542 (888)
T PRK09277 472 TDYLEKAG--------LLPYLEALGFNL-VGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKAN 542 (888)
T ss_pred HHHHHHCC--------hHHHHHHcCCEE-eCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCce
Confidence 99999975 699999999999 69999999998653211 244566 579999999999999988999
Q ss_pred EecCHHHHHHHHhcCccC-----Cccc
Q 013449 419 YLASPYTAAASALTGYVT-----DPRE 440 (443)
Q Consensus 419 yLaSP~tvaAsAl~G~I~-----dp~~ 440 (443)
|||||++||||||+|+|+ ||..
T Consensus 543 yLaSP~lvaA~AlaG~I~~d~~~dplg 569 (888)
T PRK09277 543 YLASPPLVVAYALAGTVDIDLEKDPLG 569 (888)
T ss_pred EEcCHHHHHHHHHcCccccCCCCCCcc
Confidence 999999999999999998 7763
No 25
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=4.7e-114 Score=944.28 Aligned_cols=411 Identities=25% Similarity=0.360 Sum_probs=358.6
Q ss_pred CCCCeEEEeeeEEEEcCCChHHHHHHHH------HHhCCCCcccCCC-cEEEeecCCCCCCc----HHHHHHHHHHHHHH
Q 013449 18 SPGDNVWVNVDILMTHDVCGPGSFGIFK------KEFGENAKVWDRE-KIVIIPDHYIFTSD----ERANRNVDILRDFC 86 (443)
Q Consensus 18 ~~Gd~v~~~vD~~~~hD~t~p~~~~~~~------~~~g~~~~v~~p~-~v~~~~DH~v~~~~----~~~~~~~~~~r~f~ 86 (443)
+.+..|.+++|++++||+|+++++..|. ++.|...+..||. ++.+++||++++.. ....+|+ .++|.
T Consensus 74 ~~~~ei~~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~--~~e~~ 151 (889)
T PRK12881 74 KSDDEIPFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNM--KIEFQ 151 (889)
T ss_pred CCCceeccccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHH--HHHHH
Confidence 3467888999999999999988776652 2256554555666 57799999997753 2222332 33444
Q ss_pred HHcCccee--ecccccCCcccCCCCCeeeeeeeccc-------------ceecCCceEEcCCCCccCCCcccccccCCCh
Q 013449 87 MEQNIKYF--YDIKDLGNFKANPDYKGVCHIALAQE-------------GHCRPGEVLLGTDSHTCTAGAFGQFATGIGN 151 (443)
Q Consensus 87 ~~~gi~~f--~~~~~~~~~~~~ppg~GI~Hq~l~e~-------------~~~~PG~~vvg~DSHT~t~GalGala~GvG~ 151 (443)
|+...+.| |....+.||++.|||+|||||+..|. |++.| +++|||||||||+||||+||||||+
T Consensus 152 rN~ery~fLkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~P-dtlVGtDSHT~~~galG~lg~GVGg 230 (889)
T PRK12881 152 RNAERYQFLKWGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYP-DTLVGTDSHTTMINGIGVLGWGVGG 230 (889)
T ss_pred hhHHHhChHHHHHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecC-CeEEecCCCCCCCccccceEecccH
Confidence 44444444 78888999999999999999999995 79999 6999999999999999999999999
Q ss_pred hHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhc
Q 013449 152 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEA 231 (443)
Q Consensus 152 td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~ 231 (443)
+|++++|++|++||++||+|+|+|+|+|++|||||||||+|+++||.+|++||+|||+|||+++||+++|||||||++|+
T Consensus 231 ~Eaeaamlgq~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~ 310 (889)
T PRK12881 231 IEAEAVMLGQPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEY 310 (889)
T ss_pred HHHHHHHhCCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeccCChhHHHHhhhcCCCCC--------c---c--ccCCCCCcccEEEEEECCCcceeeecCCCCCccccccccc
Q 013449 232 GGKNGVVPADGTTFKYLEDKTSLPY--------E---P--VYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECK 298 (443)
Q Consensus 232 GA~~~~f~~D~~t~~yl~~r~~~~~--------~---~--l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~ 298 (443)
||++||||+|++|++||+.+++.+. . . ..+|++|.|+++++||||+|||+||+|++|+|++++++++
T Consensus 311 GAt~g~fp~De~T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~ 390 (889)
T PRK12881 311 GATMGFFPVDEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGDPKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVK 390 (889)
T ss_pred CceEEEecCChhHHHHHHhcccchHHHHHHHHHHHHHHhhcCcCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcC
Confidence 9999999999999999999776442 1 1 1378999999999999999999999999999999999887
Q ss_pred --------------------------Cc---eeeeEEEeccCCCChHHHHHHHHHHHh----CCCccc--ccEEEeCCcH
Q 013449 299 --------------------------DV---KIDRVYIGSCTGGKTEDFLAAAKVFLA----SGKKVK--VPTFLVPATQ 343 (443)
Q Consensus 299 --------------------------~~---~Id~a~IGSCTng~~eDl~~aA~iL~~----~g~kv~--v~~~v~P~S~ 343 (443)
++ +||+||||||||+|+|||++||+||++ +|+|++ ||++|+|+|+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~ 470 (889)
T PRK12881 391 SAFSDLFSKPVAENGFAKKAQTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAPGSK 470 (889)
T ss_pred cCHHHHhhhHHHhhhhhcccccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEeCCCH
Confidence 22 799999999999999999999999954 389997 9999999999
Q ss_pred HHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccc----cCCCCc---EEEeecCCCCCCCCCCCCC
Q 013449 344 KVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA----RMNEPM---VCVSTTNRNFPGRMGHKEG 416 (443)
Q Consensus 344 ~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g----~l~~ge---v~vsT~NRNF~GR~G~~~~ 416 (443)
+|+.++.++| ++++|.++||.+ .+||||+|+|+++.... .+.+|+ ++|||+||||+||||+..+
T Consensus 471 ~V~~~l~~~G--------l~~~l~~aGf~i-~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~ 541 (889)
T PRK12881 471 VVTEYLERAG--------LLPYLEKLGFGI-VGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIK 541 (889)
T ss_pred HHHHHHHHcC--------cHHHHHHcCCEE-eCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCC
Confidence 9999999976 599999999999 69999999999643211 234564 7899999999999999989
Q ss_pred ceEecCHHHHHHHHhcCccC-----Cccc
Q 013449 417 QIYLASPYTAAASALTGYVT-----DPRE 440 (443)
Q Consensus 417 ~~yLaSP~tvaAsAl~G~I~-----dp~~ 440 (443)
.+|||||++||||||+|+|+ ||..
T Consensus 542 ~~yLaSP~lvaA~AlaG~i~~d~~~dplg 570 (889)
T PRK12881 542 ANFLASPPLVVAYALAGTVRRDLMTEPLG 570 (889)
T ss_pred ceEECCHHHHHHHHhcCceecCCCCCCcc
Confidence 99999999999999999999 7753
No 26
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=6.7e-114 Score=940.48 Aligned_cols=412 Identities=26% Similarity=0.387 Sum_probs=360.2
Q ss_pred CCCCeEEEeeeEEEEcCCCh-HHHHHH--HH---HHhCCCCcccCCC-cEEEeecCCCCCCc----HHHHHHHHHHHHHH
Q 013449 18 SPGDNVWVNVDILMTHDVCG-PGSFGI--FK---KEFGENAKVWDRE-KIVIIPDHYIFTSD----ERANRNVDILRDFC 86 (443)
Q Consensus 18 ~~Gd~v~~~vD~~~~hD~t~-p~~~~~--~~---~~~g~~~~v~~p~-~v~~~~DH~v~~~~----~~~~~~~~~~r~f~ 86 (443)
+.+..|..++|++++||+|| |.++|+ |+ .+.|.++...||. ++.+++||++++.. ....+| ..++|.
T Consensus 57 ~~~~ei~f~p~RvllQD~TGvpa~vdlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n--~~~e~~ 134 (876)
T TIGR01341 57 VADTEIAFKPARVVMQDFTGVPAVVDLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFN--MELEFE 134 (876)
T ss_pred CCCceeccCchhheeccccCchHHHHHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHH--HHHHHH
Confidence 34678889999999999999 555555 32 2257666777888 79999999997753 222233 333555
Q ss_pred HHcCccee--ecccccCCcccCCCCCeeeeeeeccc-------------ceecCCceEEcCCCCccCCCcccccccCCCh
Q 013449 87 MEQNIKYF--YDIKDLGNFKANPDYKGVCHIALAQE-------------GHCRPGEVLLGTDSHTCTAGAFGQFATGIGN 151 (443)
Q Consensus 87 ~~~gi~~f--~~~~~~~~~~~~ppg~GI~Hq~l~e~-------------~~~~PG~~vvg~DSHT~t~GalGala~GvG~ 151 (443)
|+...+.| |....++||++.|||+|||||+..|. |++.| ++||||||||||+||||+||||||+
T Consensus 135 rN~ery~fLkw~~~~f~~~~v~ppg~GI~HqV~lE~la~~v~~~~~~g~g~a~P-dtlVGtDSHT~t~GalG~la~GVGg 213 (876)
T TIGR01341 135 RNLERYQFLKWAQKAFRNFRVVPPGTGIIHQVNLEYLATVVFKAEVDGELTAYP-DSLVGTDSHTTMINGLGVLGWGVGG 213 (876)
T ss_pred hCHHHHhHHHHHHHHcccCCCCCCCCCeeceechhhcccceeecccCCcceecc-ceeeecCCCCCCCCeecceEecccH
Confidence 55554445 77888999999999999999998885 68999 5899999999999999999999999
Q ss_pred hHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhc
Q 013449 152 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEA 231 (443)
Q Consensus 152 td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~ 231 (443)
+|++++|++|++||++||+|+|+|+|+|++|||||||||+|+++||.+|++||+|||+|||+++||+++|||||||++|+
T Consensus 214 ~Eaeavmlgq~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~ 293 (876)
T TIGR01341 214 IEAEAAMLGQPYYMNVPEVIGVKLTGKLQEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEY 293 (876)
T ss_pred HHHHHHHhCCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeccCChhHHHHhhhcCCCC--------C----ccccCC-CCCcccEEEEEECCCcceeeecCCCCCccccccccc
Q 013449 232 GGKNGVVPADGTTFKYLEDKTSLP--------Y----EPVYSD-EKASFLSEYRFDISKLEPLVAKPHSPDNRALARECK 298 (443)
Q Consensus 232 GA~~~~f~~D~~t~~yl~~r~~~~--------~----~~l~~D-~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~ 298 (443)
||++||||+|++|++||+.+++.+ | ..+++| ++|.|+++++||||+|||+||+|++|+|+++++++.
T Consensus 294 GAt~g~fp~De~T~~YL~~tgr~~~~~~l~~~y~k~~~l~~~d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~ 373 (876)
T TIGR01341 294 GATCGFFPIDDVTLQYLRLTGRDGDHVELVEKYARAQGLFYDDSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVK 373 (876)
T ss_pred CceEEEEcCChhHHHHHHhCCCCHHHHHHHHHHHHhcccccCCCCCCceeEEEEEEcccceeeccCCCChhhccChhhcc
Confidence 999999999999999999987754 2 134567 899999999999999999999999999999999887
Q ss_pred Cc-----------------------------------eeeeEEEeccCCCChHHHHHHHHHHHh----CCCccc--ccEE
Q 013449 299 DV-----------------------------------KIDRVYIGSCTGGKTEDFLAAAKVFLA----SGKKVK--VPTF 337 (443)
Q Consensus 299 ~~-----------------------------------~Id~a~IGSCTng~~eDl~~aA~iL~~----~g~kv~--v~~~ 337 (443)
+. +||+||||||||+|+||+++||+||++ +|+|++ ||++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~ 453 (876)
T TIGR01341 374 AKFSKELEKNGGDKGFTLRKEPLKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTS 453 (876)
T ss_pred hhhhhHhhhhcccccccchhhhhheeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEE
Confidence 64 599999999999999999999999964 389997 9999
Q ss_pred EeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccc----cCCCC---cEEEeecCCCCCCC
Q 013449 338 LVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA----RMNEP---MVCVSTTNRNFPGR 410 (443)
Q Consensus 338 v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g----~l~~g---ev~vsT~NRNF~GR 410 (443)
|+|+|+.|+.++.++| ++++|.++||.+ .+||||+|+|++++... .+.++ ++||||+||||+||
T Consensus 454 v~PGS~~V~~~l~~~G--------l~~~L~~aGf~i-~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR 524 (876)
T TIGR01341 454 LAPGSKVVTDYLAESG--------LLPYLEELGFNL-VGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGR 524 (876)
T ss_pred EeCCCHHHHHHHHHCC--------cHHHHHHcCCEE-ecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCC
Confidence 9999999999999975 599999999999 69999999998643211 23334 38999999999999
Q ss_pred CCCCCCceEecCHHHHHHHHhcCcc-----CCcccc
Q 013449 411 MGHKEGQIYLASPYTAAASALTGYV-----TDPREF 441 (443)
Q Consensus 411 ~G~~~~~~yLaSP~tvaAsAl~G~I-----~dp~~~ 441 (443)
||+..+.+|||||++||||||+|+| +||..+
T Consensus 525 ~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dplg~ 560 (876)
T TIGR01341 525 IHPLVKGNYLASPPLVVAYALAGNIDINLYTEPIGT 560 (876)
T ss_pred CCCCCCceEECCHHHHHHHHHhCCcccCccCCCccc
Confidence 9998889999999999999999999 777643
No 27
>PLN00070 aconitate hydratase
Probab=100.00 E-value=4.4e-113 Score=937.11 Aligned_cols=411 Identities=23% Similarity=0.355 Sum_probs=362.4
Q ss_pred CCCeEEEeeeEEEEcCCCh-HHHHHH--HH---HHhCCCCcccCCC-cEEEeecCCCCC----CcHHHHHHHH-HHHHHH
Q 013449 19 PGDNVWVNVDILMTHDVCG-PGSFGI--FK---KEFGENAKVWDRE-KIVIIPDHYIFT----SDERANRNVD-ILRDFC 86 (443)
Q Consensus 19 ~Gd~v~~~vD~~~~hD~t~-p~~~~~--~~---~~~g~~~~v~~p~-~v~~~~DH~v~~----~~~~~~~~~~-~~r~f~ 86 (443)
.+..+..+|++|++||+|+ |.++|+ |+ +++|.+++..||. ++.+++||++.. +..+..+|+. ++++.+
T Consensus 114 ~~~ei~f~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~ 193 (936)
T PLN00070 114 KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNK 193 (936)
T ss_pred CCceeccCCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhH
Confidence 3557778999999999999 776666 32 2356677788998 899999999954 3344445543 455666
Q ss_pred HHcCcceeecccccCCcccCCCCCeeeeeeecc---------cceecCCceEEcCCCCccCCCcccccccCCChhHHHHH
Q 013449 87 MEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQ---------EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFV 157 (443)
Q Consensus 87 ~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e---------~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~ 157 (443)
+++++. .|..+.+.||+++|||+|||||+..| +|++.|| ++|||||||||+||||+||||||++|++++
T Consensus 194 Ery~fl-kw~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~Pd-tlVGtDSHT~~~GglG~lg~GVGg~Eaeaa 271 (936)
T PLN00070 194 ERFAFL-KWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAA 271 (936)
T ss_pred HHhChh-hhhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCC-eEEeCCcccCCCCcccccEecccHHHHHHH
Confidence 666653 38898999999999999999999999 8899995 599999999999999999999999999999
Q ss_pred hccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCceeee
Q 013449 158 LGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGV 237 (443)
Q Consensus 158 l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~ 237 (443)
|++|++||++||+|+|+|+|+|++|||||||||+|+++||.+|++||+|||+|||+++||+++|+|||||++|+||++||
T Consensus 272 Mlgqp~~~~vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~ 351 (936)
T PLN00070 272 MLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGF 351 (936)
T ss_pred HhCCeEEeeCCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHhhhcCCCCC---------c-------cccCCCCCcccEEEEEECCCcceeeecCCCCCcccccccccCc-
Q 013449 238 VPADGTTFKYLEDKTSLPY---------E-------PVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDV- 300 (443)
Q Consensus 238 f~~D~~t~~yl~~r~~~~~---------~-------~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~~- 300 (443)
||+|++|++||+.+++.+. + ...+|++|+|+++++||||+|||+||+|++|+|++|++++...
T Consensus 352 FP~De~T~~YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~ 431 (936)
T PLN00070 352 FPVDHVTLQYLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADW 431 (936)
T ss_pred ecCChHHHHHHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhhH
Confidence 9999999999999876542 1 1257899999999999999999999999999999999887431
Q ss_pred --------------------------------------eeeeEEEeccCCCChHHHHHHHHHHHh----CCCccc--ccE
Q 013449 301 --------------------------------------KIDRVYIGSCTGGKTEDFLAAAKVFLA----SGKKVK--VPT 336 (443)
Q Consensus 301 --------------------------------------~Id~a~IGSCTng~~eDl~~aA~iL~~----~g~kv~--v~~ 336 (443)
.|++||||||||+|+||+++||+||++ +|+|++ |++
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~ 511 (936)
T PLN00070 432 HSCLDNKVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKT 511 (936)
T ss_pred HHhhcccccccccccchhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccE
Confidence 167899999999999999999999975 499997 999
Q ss_pred EEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcc----ccCCCCcE---EEeecCCCCCC
Q 013449 337 FLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTY----ARMNEPMV---CVSTTNRNFPG 409 (443)
Q Consensus 337 ~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~----g~l~~gev---~vsT~NRNF~G 409 (443)
+|+|+|++|+.++.++| ++++|.++||.+ .+||||+|+|++++.. ..+.++++ ||||+||||+|
T Consensus 512 ~vaPGS~~V~~~l~~~G--------l~~~L~~aGf~v-~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeG 582 (936)
T PLN00070 512 SLAPGSGVVTKYLLKSG--------LQKYLNQQGFHI-VGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEG 582 (936)
T ss_pred EEeCCCHHHHHHHHHCC--------cHHHHHHcCCEE-cCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCC
Confidence 99999999999999975 599999999999 6999999999875431 13567775 79999999999
Q ss_pred CCCCCCCceEecCHHHHHHHHhcCcc-----CCccc
Q 013449 410 RMGHKEGQIYLASPYTAAASALTGYV-----TDPRE 440 (443)
Q Consensus 410 R~G~~~~~~yLaSP~tvaAsAl~G~I-----~dp~~ 440 (443)
|||+..+.+|||||++||||||+|+| +||..
T Consensus 583 R~gp~~~~~yLaSP~lVaA~AlaG~i~~d~~~dplg 618 (936)
T PLN00070 583 RVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIG 618 (936)
T ss_pred CCCCCCCceEEcCHHHHHHHHHcCCcccCCCCCCCc
Confidence 99998889999999999999999999 78863
No 28
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=7.4e-113 Score=934.04 Aligned_cols=411 Identities=26% Similarity=0.362 Sum_probs=361.3
Q ss_pred CCCCeEEEeeeEEEEcCCCh-HHHHHH------HHHHhCCCCcccCCC-cEEEeecCCCCCCc----HHHHHHH-HHHHH
Q 013449 18 SPGDNVWVNVDILMTHDVCG-PGSFGI------FKKEFGENAKVWDRE-KIVIIPDHYIFTSD----ERANRNV-DILRD 84 (443)
Q Consensus 18 ~~Gd~v~~~vD~~~~hD~t~-p~~~~~------~~~~~g~~~~v~~p~-~v~~~~DH~v~~~~----~~~~~~~-~~~r~ 84 (443)
.+|..|..++|++++||+|| |.++++ ++ +.|.++...+|. ++.+++||+++... ....+|+ .++++
T Consensus 81 ~~~~ei~~~p~Rvl~QD~Tgvpa~vdlaamR~~~~-~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~r 159 (898)
T PTZ00092 81 KKQIEIPFKPARVLLQDFTGVPAVVDLAAMRDAMK-RLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFER 159 (898)
T ss_pred CCCceeeeccceEEeecccCchHHHHHHHHHHHHH-HcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHHh
Confidence 56889999999999999999 555552 32 256666667888 89999999997753 2333443 34555
Q ss_pred HHHHcCcceeecccccCCcccCCCCCeeeeeeecc---------cceecCCceEEcCCCCccCCCcccccccCCChhHHH
Q 013449 85 FCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQ---------EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAG 155 (443)
Q Consensus 85 f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e---------~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a 155 (443)
.+++|++. .|..+.++||+++|||+|||||++.| .|++.| +++|||||||||+||||+||||||++|++
T Consensus 160 N~ery~fl-~~~~~~f~~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~P-d~lvGtDSHT~~~GalG~la~GVGg~Eae 237 (898)
T PTZ00092 160 NLERFEFL-KWGSKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYP-DSVVGTDSHTTMINGLGVLGWGVGGIEAE 237 (898)
T ss_pred hHHHhChH-HhhhhhhcCCcccCCCCceeceechhhhccccccccCcccC-CeEEecCCCCCCCCcccccEecccHHHHH
Confidence 66666543 37888999999999999999998876 788899 55999999999999999999999999999
Q ss_pred HHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCcee
Q 013449 156 FVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKN 235 (443)
Q Consensus 156 ~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~ 235 (443)
++|++|++||++||+|+|+|+|+|++|||||||||+|+++||.+|++||+|||+|||+++||+++|||||||++|+||++
T Consensus 238 aamlgq~~~~~vPevvgV~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~ 317 (898)
T PTZ00092 238 AVMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATM 317 (898)
T ss_pred HHHhcCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCChhHHHHhhhcCCCCC------------cccc-CCCCCcccEEEEEECCCcceeeecCCCCCcccccccccC---
Q 013449 236 GVVPADGTTFKYLEDKTSLPY------------EPVY-SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD--- 299 (443)
Q Consensus 236 ~~f~~D~~t~~yl~~r~~~~~------------~~l~-~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~--- 299 (443)
||||+|++|++||+.+++.+. ..++ +|++|.|+++++||||+|||+||+|++|+|+++++++..
T Consensus 318 gifp~De~T~~YL~~tgR~~~~~~lve~y~ka~~l~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~ 397 (898)
T PTZ00092 318 GFFPIDEKTLDYLKQTGRSEEKVELIEKYLKANGLFRTYAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFT 397 (898)
T ss_pred EEecCChhHHHHHHhcccchHHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEcccceEeccCCCChhhccCccccCCCHH
Confidence 999999999999999776532 1233 799999999999999999999999999999999998853
Q ss_pred ----------------------ce--------------eeeEEEeccCCCChHHHHHHHHHHHh----CCCccc--ccEE
Q 013449 300 ----------------------VK--------------IDRVYIGSCTGGKTEDFLAAAKVFLA----SGKKVK--VPTF 337 (443)
Q Consensus 300 ----------------------~~--------------Id~a~IGSCTng~~eDl~~aA~iL~~----~g~kv~--v~~~ 337 (443)
++ |++||||||||||+||+++||+||++ +|+|++ ||++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk~~ 477 (898)
T PTZ00092 398 ACLSAPVGFKGFGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIKTS 477 (898)
T ss_pred HhhhhhhhhhccCCCccccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEE
Confidence 12 88999999999999999999999954 489997 9999
Q ss_pred EeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccc----cCCCCcE---EEeecCCCCCCC
Q 013449 338 LVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA----RMNEPMV---CVSTTNRNFPGR 410 (443)
Q Consensus 338 v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g----~l~~gev---~vsT~NRNF~GR 410 (443)
|+|+|++|+.++.++| ++++|.++||.+ .+||||+|+|++++... .+.++++ +|||+||||+||
T Consensus 478 v~PGS~~V~~~l~~~G--------l~~~l~~aGf~i-~~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR 548 (898)
T PTZ00092 478 LSPGSKVVTKYLEASG--------LLKYLEKLGFYT-AGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGR 548 (898)
T ss_pred EeCCCHHHHHHHHHcC--------cHHHHHHcCCEE-eCCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCC
Confidence 9999999999999976 599999999999 69999999999754311 2456776 679999999999
Q ss_pred CCCCCCceEecCHHHHHHHHhcCccC-----Cccc
Q 013449 411 MGHKEGQIYLASPYTAAASALTGYVT-----DPRE 440 (443)
Q Consensus 411 ~G~~~~~~yLaSP~tvaAsAl~G~I~-----dp~~ 440 (443)
||+..+.+|||||++||||||+|+|+ ||..
T Consensus 549 ~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~~dplg 583 (898)
T PTZ00092 549 VHPLTRANYLASPPLVVAYALAGRVNIDFETEPLG 583 (898)
T ss_pred CCCCCCceEEcCHHHHHHHHHcCceecccccCCcc
Confidence 99988899999999999999999999 7754
No 29
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=3.9e-113 Score=931.43 Aligned_cols=405 Identities=23% Similarity=0.305 Sum_probs=360.9
Q ss_pred CCCCeEEEeeeEEEEcCCCh-HHHHHHH--H---HHhCCCCcccCCC-cEEEeecCCCCCC-----cHHHHHHHHHHHHH
Q 013449 18 SPGDNVWVNVDILMTHDVCG-PGSFGIF--K---KEFGENAKVWDRE-KIVIIPDHYIFTS-----DERANRNVDILRDF 85 (443)
Q Consensus 18 ~~Gd~v~~~vD~~~~hD~t~-p~~~~~~--~---~~~g~~~~v~~p~-~v~~~~DH~v~~~-----~~~~~~~~~~~r~f 85 (443)
+.+..|..++++|++||+|+ |.++|+. + .++|.+++..||. ++.+++||++... ......|. -+||
T Consensus 64 ~~~~ei~f~P~RV~mqD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~--~~e~ 141 (858)
T TIGR02333 64 KRDLDFPWYPARVVCHDILGQTALVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNR--AIED 141 (858)
T ss_pred CCCCeeccCcceeeeccccCcchhhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHH--HHHH
Confidence 34567777899999999999 6555542 1 2367678888998 8999999999443 23333344 4488
Q ss_pred HHHcCccee--ecccccCCcccCCCCCeeeeeeeccc---------ceecCCceEEcCCCCccCCCcccccccCCChhHH
Q 013449 86 CMEQNIKYF--YDIKDLGNFKANPDYKGVCHIALAQE---------GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDA 154 (443)
Q Consensus 86 ~~~~gi~~f--~~~~~~~~~~~~ppg~GI~Hq~l~e~---------~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~ 154 (443)
.|+.+++.| |....|.|++++|||+|||||++.|. |++.| +++|||||||||+||||+||||||++|+
T Consensus 142 ~rN~Ery~FLkwa~~af~~~~~~ppG~GI~HQV~lE~la~vv~~~~G~a~P-d~ivGTDSHT~~~GgLG~lg~GVGg~Ea 220 (858)
T TIGR02333 142 RRNEDRFHFINWTKTAFKNVDVIPAGNGIMHQINLEKMSPVIQVKNGVAFP-DTCVGTDSHTPHVDALGVIAIGVGGLEA 220 (858)
T ss_pred hhhHHHHHHHHHHHHHhCCcEEeCCCCCEeeeEchhhccccccccCCcccC-CeEEecCCCCCCCCccceeEecCCHHHH
Confidence 899988877 78888999999999999999999885 89999 6899999999999999999999999999
Q ss_pred HHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCce
Q 013449 155 GFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 234 (443)
Q Consensus 155 a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~ 234 (443)
+++|++|++||++||+|+|+|+|+|++|||||||||+|+++|+.+|++||+|||+|||+++||+++|+|||||++|+||+
T Consensus 221 ~aamlg~p~~l~vPevIgV~LtG~L~~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt 300 (858)
T TIGR02333 221 ETVMLGRASMMRLPDIVGVELTGKRQPGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGAT 300 (858)
T ss_pred HHHHhCCeeeeeCCcEEEEEEEeecCCCCCHhHHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhccchhhCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCChhHHHHhhhcCCCC--Cc---------ccc--CCCCCcccEEEEEECCCcceeeecCCCCCcccccccccCc-
Q 013449 235 NGVVPADGTTFKYLEDKTSLP--YE---------PVY--SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDV- 300 (443)
Q Consensus 235 ~~~f~~D~~t~~yl~~r~~~~--~~---------~l~--~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~~- 300 (443)
+||||+|++|++||+.+++++ ++ .++ +|++|+|+++++||||+|||+||+|++|+|++|++|+++.
T Consensus 301 ~gifp~De~T~~YL~~tgR~~~~~~lve~y~k~~~l~~d~d~~a~Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~ 380 (858)
T TIGR02333 301 AAMFYIDEQTIDYLKLTGREPEQVKLVETYAKAAGLWADSLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARG 380 (858)
T ss_pred EEEECCChhHHHHHHhcCCchhHHHHHHHHHHHHHhhcCcCCCCCeEEEEEEEcccceecccCCCChhhcCCHHHhhhcc
Confidence 999999999999999877654 11 233 5689999999999999999999999999999999988753
Q ss_pred ----------------eeeeEEEeccCCCChHHHHHHHHHHHh----CCCccc--ccEEEeCCcHHHHHHHhcCCCCCCC
Q 013449 301 ----------------KIDRVYIGSCTGGKTEDFLAAAKVFLA----SGKKVK--VPTFLVPATQKVWMDVYTLPVPGSG 358 (443)
Q Consensus 301 ----------------~Id~a~IGSCTng~~eDl~~aA~iL~~----~g~kv~--v~~~v~P~S~~v~~~a~~~g~~g~~ 358 (443)
+|++||||||||+|+||+++||++|++ +|+|++ ||++|+|+|++|+.++.++|
T Consensus 381 ~~~~~~~~~~g~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~G----- 455 (858)
T TIGR02333 381 IAGPAEEQPEGLMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAG----- 455 (858)
T ss_pred ccccccccccCcccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcC-----
Confidence 378999999999999999999999964 489987 99999999999999999976
Q ss_pred CchHHHHHHHcCccccCCCCCccccCCCCCccccCCCC-----------cEEEeecCCCCCCCCCCCCCceEecCHHHHH
Q 013449 359 GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEP-----------MVCVSTTNRNFPGRMGHKEGQIYLASPYTAA 427 (443)
Q Consensus 359 ~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~g-----------ev~vsT~NRNF~GR~G~~~~~~yLaSP~tva 427 (443)
++++|.++||.+ .+||||+|+|+++ .+.++ +++|||+||||+||||+..+.+|||||++||
T Consensus 456 ---l~~~L~~aGf~v-~~~GCg~CiG~~G----~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVa 527 (858)
T TIGR02333 456 ---LLPELEQLGFGI-VAFACTTCNGMSG----ALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVV 527 (858)
T ss_pred ---cHHHHHHcCCEE-eCCcchhccCcCC----CCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHH
Confidence 599999999999 6999999999853 34443 5899999999999999998899999999999
Q ss_pred HHHhcCccC-Cc
Q 013449 428 ASALTGYVT-DP 438 (443)
Q Consensus 428 AsAl~G~I~-dp 438 (443)
||||+|+|+ ||
T Consensus 528 A~AlaG~I~~d~ 539 (858)
T TIGR02333 528 AYAIAGTIRFDI 539 (858)
T ss_pred HHHHhCceeecc
Confidence 999999997 44
No 30
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=6.2e-113 Score=870.90 Aligned_cols=366 Identities=27% Similarity=0.379 Sum_probs=332.4
Q ss_pred EEEEcCCCh-HHHHHHH-----HHHhCCCCcccCCC-cEEEeecCCCCCC-----cHHHHHHHHHHHHHHHHcCcceeec
Q 013449 29 ILMTHDVCG-PGSFGIF-----KKEFGENAKVWDRE-KIVIIPDHYIFTS-----DERANRNVDILRDFCMEQNIKYFYD 96 (443)
Q Consensus 29 ~~~~hD~t~-p~~~~~~-----~~~~g~~~~v~~p~-~v~~~~DH~v~~~-----~~~~~~~~~~~r~f~~~~gi~~f~~ 96 (443)
++++||+|+ |.++|+. ..+.|.+++..||. ++.+++||++++. +....++.+.+++.+++|++.+ |.
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~-~~ 79 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLK-WG 79 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHH-HH
Confidence 367899999 7777652 12367677888998 8999999999876 3444456678889999998754 67
Q ss_pred ccccCCcccCCCCCeeeeeeecc-------------cceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhccceE
Q 013449 97 IKDLGNFKANPDYKGVCHIALAQ-------------EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKV 163 (443)
Q Consensus 97 ~~~~~~~~~~ppg~GI~Hq~l~e-------------~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~tg~~ 163 (443)
...++|+++.||++|||||++.| +|+++| ++|+|+||||||+||||+||||||++|++.+|++|++
T Consensus 80 ~~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P-~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~ 158 (404)
T cd01586 80 QKAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYP-DSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPI 158 (404)
T ss_pred HHHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEee-eeEeecCCCCccCCcccceEecccHHHHHHHHhCCcc
Confidence 77888999999999999999866 789999 5999999999999999999999999999999999999
Q ss_pred EeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCceeeeccCChh
Q 013449 164 LLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGT 243 (443)
Q Consensus 164 ~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~f~~D~~ 243 (443)
||++||+|+|+|+|+|++||++|||||+|+++|+.+|++|++|||+|+++++||+++|||||||++|+||+++|||+|
T Consensus 159 ~~~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D-- 236 (404)
T cd01586 159 SMLLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD-- 236 (404)
T ss_pred ccCCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCccccCCCCCcccEEEEEECCCcceeeecCCCCCcccccccccCceeeeEEEeccCCCChHHHHHHHH
Q 013449 244 TFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAK 323 (443)
Q Consensus 244 t~~yl~~r~~~~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eDl~~aA~ 323 (443)
+++++||||+|||+||+|++|+|++|+ +.+|||||||||||||+|||++||+
T Consensus 237 ------------------------d~~i~iDls~leP~Va~P~~Pd~v~~v----~~~Id~v~IGSCTNgr~eDl~~aA~ 288 (404)
T cd01586 237 ------------------------TQVVELDLSTVEPSVSGPKRPQDRVPL----HGSVVIAAITSCTNTSNPSVMLAAG 288 (404)
T ss_pred ------------------------ceEEEEEcccceeeecCCCCcccccCc----CCcEeEEEEEcCCCCCCHHHHHHHH
Confidence 689999999999999999999999999 4599999999999999999999999
Q ss_pred HHHh----CCCccc--ccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcc----ccC
Q 013449 324 VFLA----SGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTY----ARM 393 (443)
Q Consensus 324 iL~~----~g~kv~--v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~----g~l 393 (443)
||.+ +|+|++ ||++|+|+|++|+++++++| ++++|.+|||.| .+||||+|+|++++.. ..+
T Consensus 289 iL~~~a~~kG~kv~~~V~~~v~PgS~~V~~~~~~~G--------l~~~l~~aGa~v-~~pgCg~CiG~~g~~~~~~~~~~ 359 (404)
T cd01586 289 LLAKKAVELGLKVKPYVKTSLAPGSRVVTKYLEASG--------LLPYLEKLGFHV-VGYGCTTCIGNSGPLPEEVEEAI 359 (404)
T ss_pred HHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCC--------hHHHHHHcCCEE-cCCcchhccCCCCCCCchhhhhc
Confidence 9932 488987 99999999999999999975 699999999999 6999999999864321 117
Q ss_pred CCCcEE---EeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCcc
Q 013449 394 NEPMVC---VSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYV 435 (443)
Q Consensus 394 ~~gev~---vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I 435 (443)
.+||+| |||+||||+||||+..+++|||||++||||||+|+|
T Consensus 360 ~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~vAAsAi~G~i 404 (404)
T cd01586 360 KENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLVVAYALAGTV 404 (404)
T ss_pred cCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHHHHHHhcccC
Confidence 889995 799999999999998889999999999999999987
No 31
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=4e-103 Score=844.13 Aligned_cols=426 Identities=27% Similarity=0.404 Sum_probs=362.7
Q ss_pred CHHHHHHHhhcCCC---------CCCCC-------CeEEEeeeEEEEcCCCh-HHHHH------HHHHHhCCCC-cccCC
Q 013449 2 TLTEKIFSRASEKP---------QLSPG-------DNVWVNVDILMTHDVCG-PGSFG------IFKKEFGENA-KVWDR 57 (443)
Q Consensus 2 Tl~EKIl~~~~~~~---------~v~~G-------d~v~~~vD~~~~hD~t~-p~~~~------~~~~~~g~~~-~v~~p 57 (443)
+.++|||.+|.-+. .+..+ ..+..+++++++||+|+ |.+++ .+.+ .|.++ +++.+
T Consensus 34 p~s~kiL~e~l~r~~d~~~~~i~~~~~w~~~~~~~~ei~~~p~RVvmQD~tgvpa~vdla~mr~a~~~-~g~dp~~inP~ 112 (861)
T COG1048 34 PYSLKILLENLLRGEDGTEEHIEALARWLPSGKPEKEIAFRPARVVMQDFTGVPAVVDLAAMRDAMVE-LGGDPAKINPV 112 (861)
T ss_pred ChhHHHHHHHhccccccchhHHHHHhccccccCcccccccccceeeeecccCCCeeEEhhhHHHHHHH-hcCChhhcCCC
Confidence 67889999886543 12222 56778999999999999 44332 2333 44444 55444
Q ss_pred CcEEEeecCCCCCC----cHHHHHHHHHHHHHHHHcCccee--ecccccCCcccCCCCCeeeeeeecccc----eecCC-
Q 013449 58 EKIVIIPDHYIFTS----DERANRNVDILRDFCMEQNIKYF--YDIKDLGNFKANPDYKGVCHIALAQEG----HCRPG- 126 (443)
Q Consensus 58 ~~v~~~~DH~v~~~----~~~~~~~~~~~r~f~~~~gi~~f--~~~~~~~~~~~~ppg~GI~Hq~l~e~~----~~~PG- 126 (443)
-++++++||++... ..+.++|.+ ++|.|+...+.| |..+.|.||+++|||+|||||+..|.. ++.||
T Consensus 113 ~pvdLviDHsv~vd~~g~~~a~~~n~~--~e~~rN~ery~FL~w~~kaf~n~~vvPPGtGIiHQVnLE~la~vv~~~~g~ 190 (861)
T COG1048 113 VPVDLVIDHSVQVDVGGDPDAFEKNVE--LEFERNGERYKFLKWAAKAFYNFRVVPPGTGIIHQVNLEYLAKVVWAKPGV 190 (861)
T ss_pred CcceeeecceeeeecCCChhhhhhhhh--hHhhhhhHHHHHHHHHHHhcCCcEEECCCCceeeeehHhhhccceeccCcc
Confidence 49999999999432 333444444 377888877777 677778999999999999999876642 44589
Q ss_pred ---ceEEcCCCCccCCCcccccccCCChhHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCc
Q 013449 127 ---EVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATY 203 (443)
Q Consensus 127 ---~~vvg~DSHT~t~GalGala~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~ 203 (443)
|++|||||||+|+|+||+||||||++|++++|+++++||++||+|+|+|+|+|++|||||||||+|+++|+++|+++
T Consensus 191 a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGVkLtGkl~~gvTatDlvL~vt~~Lr~~gvVg 270 (861)
T COG1048 191 AYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGVKLTGKLPEGVTATDLVLTVTGMLRKKGVVG 270 (861)
T ss_pred cccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEEEEeccCCCCCCHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccccccCChhhHhhHhhhhhhcCceeeeccCChhHHHHhhhcCCCC--------Ccc---c---cCCCCCcccE
Q 013449 204 KSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP--------YEP---V---YSDEKASFLS 269 (443)
Q Consensus 204 ~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~f~~D~~t~~yl~~r~~~~--------~~~---l---~~D~~a~Y~~ 269 (443)
|+|||+|||+++||+++|+|||||++|+||++|+||.|++|++||+.++|.+ |.. + .+|++|+|++
T Consensus 271 kfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR~~~~i~lve~y~~~~~l~~~~~~~~a~Y~~ 350 (861)
T COG1048 271 KFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGRSEEQVALVEAYAKAQGLWYDPADKDAEYDK 350 (861)
T ss_pred eEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCCchHHHHHHHHHHHHhcccCCccccCCccce
Confidence 9999999999999999999999999999999999999999999999877743 211 2 2567999999
Q ss_pred EEEEECCCcceeeecCCCCCcccccccccC------------------------ceeeeEEEeccCCCChHHHHHHHHHH
Q 013449 270 EYRFDISKLEPLVAKPHSPDNRALARECKD------------------------VKIDRVYIGSCTGGKTEDFLAAAKVF 325 (443)
Q Consensus 270 ~i~iDls~leP~Va~P~~p~n~~~v~e~~~------------------------~~Id~a~IGSCTng~~eDl~~aA~iL 325 (443)
+++||||+|+|+||+|++|+|+.++++++. .+|.+++|+||||+++||+++||+||
T Consensus 351 ~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~V~iaaItSCTNtSnp~v~~aAgll 430 (861)
T COG1048 351 VLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIKRVYSLLGKELGDGKVVIAAITSCTNTSNPDVLIAAGLL 430 (861)
T ss_pred eEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhcccccccccccCCCCcEEEEEEeeccCCCCHHHHHHHHHH
Confidence 999999999999999999999999987765 78999999999999999999999999
Q ss_pred Hh----CCCccc--ccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcc----ccCCC
Q 013449 326 LA----SGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTY----ARMNE 395 (443)
Q Consensus 326 ~~----~g~kv~--v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~----g~l~~ 395 (443)
++ +|++++ |+++++|+|+.|...+.+.| ++++|.++||.+ .++|||+|+|+++... -.+.+
T Consensus 431 ak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~G--------l~~~L~~lGf~i-v~~gCttCIGnsg~L~~~i~~~I~~ 501 (861)
T COG1048 431 AKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKAG--------LLPYLEKLGFNI-VGYGCTTCIGNSGPLPEEIEKAIND 501 (861)
T ss_pred HhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHcC--------CHHHHHhcCCEE-eccccccccCCCCCCChhhhhcccc
Confidence 85 477776 99999999999999998875 599999999999 7999999999864311 12444
Q ss_pred Cc---EEEeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCcc-CCcc
Q 013449 396 PM---VCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYV-TDPR 439 (443)
Q Consensus 396 ge---v~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I-~dp~ 439 (443)
++ .+|.|+||||+||+|+.....|||||++|+||||+|+| .||+
T Consensus 502 ~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~i~~d~~ 549 (861)
T COG1048 502 NDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGTINFDLT 549 (861)
T ss_pred CceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcccccCcc
Confidence 44 34679999999999999999999999999999999999 4553
No 32
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-91 Score=722.01 Aligned_cols=410 Identities=29% Similarity=0.429 Sum_probs=363.7
Q ss_pred CCHHHHHHHhhcCCC----CCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCC------
Q 013449 1 MTLTEKIFSRASEKP----QLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFT------ 70 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~~----~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~------ 70 (443)
+|++||||..|...+ -++-++++.+++|++++||.|..|++-+|.. .| ..+|.+|.. ++.||.+-+
T Consensus 59 ~tl~EKIlyshl~~p~~~~i~Rg~~Yl~lrPdrva~qDasaqma~LqFms-~G-l~kvavPst--IhCdhli~a~~gg~~ 134 (778)
T KOG0453|consen 59 LTLTEKILYSHLDNPPEQKIVRGGSYLKLRPDRVAMQDASAQMALLQFMS-SG-LKKVAVPST--IHCDHLIEAQVGGDK 134 (778)
T ss_pred chhhHHHHHhhccCCcccceecccceEEEcccceecccchhhHHHHHHHh-cC-cccccCCce--EEecceeeeccCCcc
Confidence 489999999998543 2556789999999999999997665555533 56 478988885 577886633
Q ss_pred ----CcHHHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccc
Q 013449 71 ----SDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFA 146 (443)
Q Consensus 71 ----~~~~~~~~~~~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala 146 (443)
......+.++++..||++|||. ||. ||.||+||++.|+ |+.||-++|||||||+++|+||+++
T Consensus 135 Dl~~a~~~Nkevydfl~saakkygi~-Fw~-----------pGsGIiHQIvlEn-YAfPG~m~igTDSHTpn~GGLG~l~ 201 (778)
T KOG0453|consen 135 DLQRASDLNKEVYDFLESAAKKYGIG-FWK-----------PGSGIIHQIVLEN-YAFPGLMMIGTDSHTPNAGGLGCLA 201 (778)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCC-ccC-----------CCCceeeeeeeec-ccCCcceEEeccCCCCCCCccceee
Confidence 2233345578999999999996 564 6789999999987 9999999999999999999999999
Q ss_pred cCCChhHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhh
Q 013449 147 TGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCN 226 (443)
Q Consensus 147 ~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~N 226 (443)
+|||++|++.+|++.++.++.|++++|+|+|+|+.|.++|||||++.+.|..+|+++++|||+||||++||.+.|.||||
T Consensus 202 igVggaDAvdvmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv~slSctgm~TIcN 281 (778)
T KOG0453|consen 202 IGVGGADAVDVMATQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNSLSCTGMATICN 281 (778)
T ss_pred eccccchHHHHhcCCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCccceeccccceeecc
Confidence 99999999999999777699999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCceeeeccCChhHHHHhhhcCCCCC--------c-cccCCCCCcccEEEEEECCCcceeeecCCCCCcccccccc
Q 013449 227 MVVEAGGKNGVVPADGTTFKYLEDKTSLPY--------E-PVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC 297 (443)
Q Consensus 227 Ma~E~GA~~~~f~~D~~t~~yl~~r~~~~~--------~-~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~ 297 (443)
|.+|.||++++||.|++..+||+..++... . .+.+|++|.|++.|+||||+|+|.|.+|++||-..|++++
T Consensus 282 MgaEiGAtTs~FP~n~~m~~yL~atgr~~ia~~a~~~~~~~l~AD~~a~Ydk~ieIdLstL~P~vnGPfTpdl~~pvskl 361 (778)
T KOG0453|consen 282 MGAEIGATTSLFPYNERMIDYLQATGRNEIAREARETLDAILAADKGAHYDKIIEIDLSTLEPHVNGPFTPDLSTPVSKL 361 (778)
T ss_pred ccccccccccccCCCHHHHHHHHHhCcccchhhhHHhhhhcccCCCCCCcceEEEEEhhhcccccCCCCCccccChHHHH
Confidence 999999999999999999999998766431 1 4789999999999999999999999999999999999877
Q ss_pred cC--------ceeeeEEEeccCCCChHHHHHHHHHHH---hCCCcccccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHH
Q 013449 298 KD--------VKIDRVYIGSCTGGKTEDFLAAAKVFL---ASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIF 366 (443)
Q Consensus 298 ~~--------~~Id~a~IGSCTng~~eDl~~aA~iL~---~~g~kv~v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l 366 (443)
.. ++|..++||||||+|+|||-.||.|.+ ++|+|.+|.+.|+|+|.+|...+.+.| .+++|
T Consensus 362 ~e~~~kn~wp~~i~~gligSCTNSsyeDm~raa~iv~~a~~~glk~~v~F~VtpgSeqirAtierdG--------~~e~l 433 (778)
T KOG0453|consen 362 GENSEKNGWPIKIKVGLIGSCTNSSYEDMSRAADIVKQAKGKGLKPKVPFYVTPGSEQIRATIERDG--------IWETL 433 (778)
T ss_pred hHHhhhcCCceeeeeeEEEeecCccHHHHHHHHHHHHHHHhcCCCCCcceEeccChHHhhhhHhhcc--------hHHHH
Confidence 64 678899999999999999999999994 458888899999999999999988765 59999
Q ss_pred HHcCccccCCCCCccccCCCCCccccCCCCcEE--EeecCCCCCCCCCCCC-CceEecCHHHHHHHHhcCccCCc
Q 013449 367 EEAGCDTPASPSCGACLGGPKDTYARMNEPMVC--VSTTNRNFPGRMGHKE-GQIYLASPYTAAASALTGYVTDP 438 (443)
Q Consensus 367 ~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~--vsT~NRNF~GR~G~~~-~~~yLaSP~tvaAsAl~G~I~dp 438 (443)
.++|+.+ ++.+||||+|.+.. -.+.+||+- |++.||||.|||+... ...||+||++|+|+|++|++.-|
T Consensus 434 ~~~G~~v-LanaCGPCIGqw~r--~dvk~GE~ntivts~NRNFtgRnd~np~t~afltSP~iVtA~aiaG~l~fn 505 (778)
T KOG0453|consen 434 EKAGGIV-LANACGPCIGQWDR--KDIKKGEKNTIVTSYNRNFTGRNDANPATHAFLTSPEIVTALAIAGDLSFN 505 (778)
T ss_pred HhcCCEE-cccCcCCccccccc--ccccCCCcCceeeeecccccccCCCCcchhhcccCHHHHHHHHHhccccCC
Confidence 9999999 79999999998642 147788865 9999999999998776 88899999999999999999855
No 33
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-85 Score=672.26 Aligned_cols=416 Identities=24% Similarity=0.382 Sum_probs=351.3
Q ss_pred HHHHHHhhc-CCCCCCCCCeEEEeeeEEEEcCCCh-HHHHHH------HHHHhCCCCcccCCC-cEEEeecCCCCCCc--
Q 013449 4 TEKIFSRAS-EKPQLSPGDNVWVNVDILMTHDVCG-PGSFGI------FKKEFGENAKVWDRE-KIVIIPDHYIFTSD-- 72 (443)
Q Consensus 4 ~EKIl~~~~-~~~~v~~Gd~v~~~vD~~~~hD~t~-p~~~~~------~~~~~g~~~~v~~p~-~v~~~~DH~v~~~~-- 72 (443)
+||||.=.. .+++| .|-.++-++++||+|| |.++|+ +++ +|.++.-.||- ++.+++||++..+.
T Consensus 63 Ve~IldW~~t~~k~v----EvpFkPARViLQDFTGvPavVD~AaMRdAv~~-lGgdp~KinP~cP~DLviDHSvQvDf~r 137 (892)
T KOG0452|consen 63 VENILDWKNTQKKQV----EVPFKPARVILQDFTGVPAVVDFAAMRDAVKN-LGGDPEKINPLCPVDLVIDHSVQVDFAR 137 (892)
T ss_pred HHHHhCccccCccce----eeccccceeeeecccCCchheeHHHHHHHHHH-cCCCHHHcCCCCCcceEeeeeeEEeecc
Confidence 577776432 12222 4556778888899999 766554 343 56555556776 89999999995432
Q ss_pred --HHHHHHHHHHHHHHHHcCccee--ecccccCCcccCCCCCeeeeee---------ecccceecCCceEEcCCCCccCC
Q 013449 73 --ERANRNVDILRDFCMEQNIKYF--YDIKDLGNFKANPDYKGVCHIA---------LAQEGHCRPGEVLLGTDSHTCTA 139 (443)
Q Consensus 73 --~~~~~~~~~~r~f~~~~gi~~f--~~~~~~~~~~~~ppg~GI~Hq~---------l~e~~~~~PG~~vvg~DSHT~t~ 139 (443)
.+.++|+.. ||.|+.+...| |....|.|..|+|||.||+||+ +.+..+..| |-||||||||+|.
T Consensus 138 ~~~alqkN~~l--EF~RNkERf~FlKWgs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyP-DSvVGTDSHtTMi 214 (892)
T KOG0452|consen 138 SADALQKNQEL--EFERNKERFTFLKWGSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESKDLLYP-DSVVGTDSHTTMI 214 (892)
T ss_pred CHHHHhhccee--eeecchhhhhhhhhhhHhhcceEEeCCCCceeEEeehhhhhheeeccCceecc-cccccccCcceee
Confidence 223334433 78888776556 7788899999999999999994 334566777 7799999999999
Q ss_pred CcccccccCCChhHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChh
Q 013449 140 GAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSME 219 (443)
Q Consensus 140 GalGala~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~ 219 (443)
.++|++|||||+.|.+++|+++++.|.+||+|+.+|+|||.++||+.|++|.|++.||..|++||+|||+|+|+++||+.
T Consensus 215 dGlGvlGWGVGGIEaEAvMLGqpiSmvlP~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSia 294 (892)
T KOG0452|consen 215 DGLGVLGWGVGGIEAEAVMLGQPISMVLPEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIA 294 (892)
T ss_pred cccceeeccccceehhhhhhcCchheecccceeEEeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhHhhhhhhcCceeeeccCChhHHHHhhhcCCCCC---------------ccc-cCCCCCcccEEEEEECCCcceeee
Q 013449 220 ERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPY---------------EPV-YSDEKASFLSEYRFDISKLEPLVA 283 (443)
Q Consensus 220 ~R~ti~NMa~E~GA~~~~f~~D~~t~~yl~~r~~~~~---------------~~l-~~D~~a~Y~~~i~iDls~leP~Va 283 (443)
||+||+||++|+||+.|+||.|+.|++||+..++.+- +.+ .++.+..|.+++++||++++|+|+
T Consensus 295 DRaTIaNMcPEYGAt~gfFPvD~vtl~yl~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vS 374 (892)
T KOG0452|consen 295 DRATIANMCPEYGATMGFFPVDEVTLQYLKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVS 374 (892)
T ss_pred hhhhhhhcCccccceeeeeccchhHHHHHHHcCCcHHHHHHHHHHHHHHhhhhhccCcccCcceeeEEEEecCceeeccC
Confidence 9999999999999999999999999999998776431 111 256789999999999999999999
Q ss_pred cCCCCCcccccccccC---------------------------------------ceeeeEEEeccCCCChHHHHHHHHH
Q 013449 284 KPHSPDNRALARECKD---------------------------------------VKIDRVYIGSCTGGKTEDFLAAAKV 324 (443)
Q Consensus 284 ~P~~p~n~~~v~e~~~---------------------------------------~~Id~a~IGSCTng~~eDl~~aA~i 324 (443)
+|++|++++++++++. -.|-+|.|+||||++++.++.+|.+
T Consensus 375 GPKRPhDrV~v~dmk~Df~scL~~~vgFKgFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgL 454 (892)
T KOG0452|consen 375 GPKRPHDRVAVSDMKADFHSCLDSKVGFKGFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGL 454 (892)
T ss_pred CCCCCccccchhhHHHHHHHhhcCcccccccccChhHhhceEEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhH
Confidence 9999999999986641 1234799999999999999999999
Q ss_pred HHhC----CCccc--ccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcc----ccCC
Q 013449 325 FLAS----GKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTY----ARMN 394 (443)
Q Consensus 325 L~~~----g~kv~--v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~----g~l~ 394 (443)
|++| |++|+ +|+.++|+|.-|-..+.++| ++.||.+.|+.| .++||.+|+|+.+... ..+.
T Consensus 455 lAKkAv~~GL~v~PyikTSLsPGSgvVt~YL~~SG--------v~pyL~klGF~I-vGYGC~TCiGNsgpl~e~V~~ai~ 525 (892)
T KOG0452|consen 455 LAKKAVELGLNVKPYIKTSLSPGSGVVTKYLSESG--------VLPYLEKLGFDI-VGYGCMTCIGNSGPLDEAVVNAIE 525 (892)
T ss_pred HHHHHHhcCceecceeecccCCCCchhhhhhhhcc--------chhHHHhcCcee-eccccceeccCCCCCCHHHHHhhh
Confidence 9976 88886 99999999999988888765 589999999999 6999999999864321 1355
Q ss_pred CCcE---EEeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCccC
Q 013449 395 EPMV---CVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVT 436 (443)
Q Consensus 395 ~gev---~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I~ 436 (443)
.++. .|.|+||||+||+++....+|||||++|.||||+|++.
T Consensus 526 ~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvvaYaiaGtV~ 570 (892)
T KOG0452|consen 526 QNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVVAYAIAGTVN 570 (892)
T ss_pred cCCeEEEEEeecCCCccccccccchhhhccCchHHhhhhhcceee
Confidence 5553 38999999999999999999999999999999999985
No 34
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=1.1e-64 Score=524.97 Aligned_cols=405 Identities=25% Similarity=0.367 Sum_probs=357.4
Q ss_pred CCHHHHHHHhhcCCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHHHHHHH
Q 013449 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD 80 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~~~~~~ 80 (443)
.|++|||+.|++|.+.++||..+..++..|-+||.||||+.+++++... -.++-+-+.-.+.|....+.+...++|.
T Consensus 373 ~TlaqKmvgrAcGv~girpGtycepkmttVGSQDTTGpMTrdElk~lAc---lgfsaD~vmQSfCHTAaypkpvdv~th~ 449 (852)
T COG1049 373 FTLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGPMTRDELKDLAC---LGFSADLVMQSFCHTAAYPKPVDVKTHH 449 (852)
T ss_pred ccHHHHHhhhccCCccccCCCcccceeeeeccccCCCCccHHHHHHHHh---hcccchhhhhhcccccccCCccchhccc
Confidence 4899999999999999999999999999999999999999999976433 3567788888999998777777888899
Q ss_pred HHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhcc
Q 013449 81 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT 160 (443)
Q Consensus 81 ~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~t 160 (443)
.|.+|..++|. ++.. ||.||+|.||.+ +++|..+..|+||||.+.-+ ++|+.|+.-++++.+|
T Consensus 450 ~Lp~Fi~~rGg-----------Vslr-pgdGVIHswLNr--mllpDtvgtGGDSHTRfpiG---isFpAgSGlVAfAaat 512 (852)
T COG1049 450 TLPDFIMNRGG-----------VSLR-PGDGVIHSWLNR--MLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAAT 512 (852)
T ss_pred cchHHHhhcCc-----------eecC-CCCccHHHHHHh--ccCCcceecCCccccccccc---ceecCCCchhhhhHhc
Confidence 99988777664 3334 468999999976 89999999999999998654 7899999999999999
Q ss_pred ceEEeecCCEEEEEEEeeCCCCCChHHHHHHH----HHH--hhcc------CCCceEEEEeccccccCChhhHhhHhhhh
Q 013449 161 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQI----IGE--ISVA------GATYKSMEFVGTTVERLSMEERMTLCNMV 228 (443)
Q Consensus 161 g~~~~~vPetv~V~l~G~l~~gV~akDviL~i----~~~--l~~~------g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa 228 (443)
|.+.|.+||+|.|+|+|+|.||++-+||+.+| |++ |.++ =..|+++|.. |+.+|.+++-++|+..+
T Consensus 513 GvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRIlEie--glp~LkveQAFeltDas 590 (852)
T COG1049 513 GVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEIE--GLPDLKVEQAFELTDAS 590 (852)
T ss_pred CcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccceecceeEEec--cCcccchhhheeccchh
Confidence 99999999999999999999999999999886 333 4422 2468889988 58999999999999999
Q ss_pred hhcCceeeecc-CChhHHHHhhhc----------CCCC-----------------CccccCCCCCcccEEEEEECCCc-c
Q 013449 229 VEAGGKNGVVP-ADGTTFKYLEDK----------TSLP-----------------YEPVYSDEKASFLSEYRFDISKL-E 279 (443)
Q Consensus 229 ~E~GA~~~~f~-~D~~t~~yl~~r----------~~~~-----------------~~~l~~D~~a~Y~~~i~iDls~l-e 279 (443)
.|..|+.+.+- .+|...+||+.. +.++ ...+.+|.||+|..+|+|||+.| |
T Consensus 591 AErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~wla~p~lle~D~dAeYaavIeidL~~IkE 670 (852)
T COG1049 591 AERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPELLEADADAEYAAVIEIDLADIKE 670 (852)
T ss_pred hhhhhccceEecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhcCccccCCCCCCceeEEEEeeHHHcCC
Confidence 99999998655 777888999853 1111 23467999999999999999999 9
Q ss_pred eeeecCCCCCcccccccccCceeeeEEEeccCCCChHHHHHHHHHHHhCCCcccccEEEeCCcHHHHHHHhcCCCCCCCC
Q 013449 280 PLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGG 359 (443)
Q Consensus 280 P~Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eDl~~aA~iL~~~g~kv~v~~~v~P~S~~v~~~a~~~g~~g~~~ 359 (443)
|++++|.+||+++.++|+.+.+||.+|||||... +-++|++|++|++.+..++.|++|+|.++-.-.|+.++|
T Consensus 671 Pila~PNdpDd~r~lse~~~~~idevFiGSCMtn-iGh~ra~~klL~~~~~~~~~rLwvapPTkmd~~qL~~EG------ 743 (852)
T COG1049 671 PILAAPNDPDDVRLLSEVAGDKIDEVFIGSCMTN-IGHFRAAGKLLENAKGELPTRLWVAPPTKMDAAQLTEEG------ 743 (852)
T ss_pred CeecCCCCchHhhHhHHhcCCccceeeeehhhcc-chhHHHHHHHHHhcccCCCcceEecCCccccHHHHhhcc------
Confidence 9999999999999999999999999999999877 699999999999765577899999999999999988865
Q ss_pred chHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcEEEeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCccCCcc
Q 013449 360 KTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 439 (443)
Q Consensus 360 ~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I~dp~ 439 (443)
++.+|-++|+.++ .|||+.|+|| +.+.++|.+++|||+|||++|||. .+.+||+|.+++|.+|+.|+|...+
T Consensus 744 --~y~ifg~agar~E-~PGCsLCMGN----Qarv~dgatV~sTSTRnF~nRlg~-~a~vyL~Saelaav~aiLGkiPt~e 815 (852)
T COG1049 744 --YYSIFGKAGARIE-MPGCSLCMGN----QARVADGATVFSTSTRNFPNRLGK-GANVYLASAELAAVCAILGKIPTVE 815 (852)
T ss_pred --hHHHHhhccceec-CCCccccccc----HhhhccCCEEEeeccccCCccccc-ccceeeeccHHHHHHHHHcCCCCHH
Confidence 6999999999995 7999999998 347889999999999999999996 6899999999999999999999999
Q ss_pred ccc
Q 013449 440 EFL 442 (443)
Q Consensus 440 ~~~ 442 (443)
+|+
T Consensus 816 EY~ 818 (852)
T COG1049 816 EYM 818 (852)
T ss_pred HHH
Confidence 885
No 35
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-50 Score=407.62 Aligned_cols=431 Identities=32% Similarity=0.316 Sum_probs=394.7
Q ss_pred CCHHHHHHHhhcCCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHHHHHHH
Q 013449 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD 80 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~~~~~~ 80 (443)
||++|||+++.+.+.-+.+|+..+.++|.+|.||..++.....+.++++..++||+|+|+++.+||.+..++....+++.
T Consensus 67 ~~vtd~i~a~~~ersL~ymGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv~g~Kia~n~k~am~vpgsglvkk~a 146 (502)
T KOG0454|consen 67 MTVTDKILARASERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVVDGEKIAVNPKHAMFVPGSGLVKKVA 146 (502)
T ss_pred cccchHHHHhhhhhceeeccCCCCcccceeeecceeccccccccHHHHhhhhhccccceeEecccceEEecCchhhHhHH
Confidence 79999999999999888999999999999999999999988888888887789999999999999999999999999999
Q ss_pred HHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhcc
Q 013449 81 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT 160 (443)
Q Consensus 81 ~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~t 160 (443)
++++.+|.+.+..||+.....++++.|-..|+||.-...++.-+|++...|+||||++.++.++|+.|+++.++.....+
T Consensus 147 eaegld~if~eagF~wreagcs~clgmnpd~l~~yercastsnRnfEgrqGa~srThlma~s~qfAagi~~~~~~~~~~~ 226 (502)
T KOG0454|consen 147 EAEGLDRIFNEAGFYWREAGCSFCLGMNPDGLCHYERCASTSNRNFEGRQGADSRTHLMAASMQFAAGIGGHDLGFREFT 226 (502)
T ss_pred HHHhhHHHHHhhceehhhccccccccCCchhccHHHHhhhccCCCccccccccccchhhhhhHHhhcccccccccccccc
Confidence 99999999999999888788899999988999999888889999999999999999999999999999999999999999
Q ss_pred ceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCceeeeccC
Q 013449 161 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 240 (443)
Q Consensus 161 g~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~f~~ 240 (443)
++..+++|.++.+.++|..++-..++|+++.++...-.++..++.+||.+-.. +|+++.|+|||||..|.+-+.+|+|+
T Consensus 227 ~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m~~F~tLc~vv~dNiDTD~IIP~ 305 (502)
T KOG0454|consen 227 GKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGMETFHTLCGVVADNIDTDQIIPA 305 (502)
T ss_pred ccccccCCCCceEEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccCcceeeeehhhhhhCCcCcccCh
Confidence 99999999999999999999999999999999998888889999999998877 99999999999999999999999999
Q ss_pred ChhHHHHhhhcCCCCCccccCCCC-CcccEEEEEECCCcceeeecCCCCCcccccccccCceeeeEEEeccCCCChHHHH
Q 013449 241 DGTTFKYLEDKTSLPYEPVYSDEK-ASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFL 319 (443)
Q Consensus 241 D~~t~~yl~~r~~~~~~~l~~D~~-a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eDl~ 319 (443)
|-.|+-|-..-....+-+++.|.+ +.|...+.+|.+-++|.+..|++ ||.---++.+..||+..++|+|+.+.-++.+
T Consensus 306 qfltli~~~~~~~~~f~~~~~dg~~k~~~~dFv~~vE~~~~~siii~~-DNFGCGSSREHAPv~L~~~GakaivA~Sya~ 384 (502)
T KOG0454|consen 306 QFLTLIPSTGLILSCFYEVALDGLPKSFVTDFVLPVEPLRKYSIIIGG-DNFGCGSSREHAPVCLGAAGAKAIVAPSYAR 384 (502)
T ss_pred hhhcccccchhhhhhhhhheecCCchhhccceeccccccceeEEEecc-CCcccccccccCcchhhhcccceecchhHHH
Confidence 988876665544455556677776 88999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcccccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcEE
Q 013449 320 AAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVC 399 (443)
Q Consensus 320 ~aA~iL~~~g~kv~v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~ 399 (443)
++++..-+.|+.+.+...+.|..+.++..-....+++.++..++.++.+.+.. .+.|-|+.|.+++.+..+....-+.+
T Consensus 385 IFfrN~~atG~l~~~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f-~lkP~~~aclV~~ad~I~~~~~ke~m 463 (502)
T KOG0454|consen 385 IFFRNSVATGELPPLPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYF-KLKPFGDACLVIDADGIFAYARKEGM 463 (502)
T ss_pred HHHHhHHhcCCccCCCceeeecccceecceeeEEcccCCcceeeeeeccccee-ecCcccccCcccCchHHHHhhccccc
Confidence 99998877798888888888988888876666556665555677788888883 36899999999876656677778999
Q ss_pred EeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCc
Q 013449 400 VSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGY 434 (443)
Q Consensus 400 vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~ 434 (443)
|+|+||||++|||.+++++|||||.+|+|++++|+
T Consensus 464 Iss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 464 ISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred cchhhhcCccccCccccceEEccccchhhhhhcCC
Confidence 99999999999999999999999999999999998
No 36
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.90 E-value=1.6e-24 Score=219.66 Aligned_cols=171 Identities=29% Similarity=0.424 Sum_probs=149.4
Q ss_pred CccccCCCCCcccEEEEEECCCcceeeecCCCCCcccccc-------------------------------cccCceeee
Q 013449 256 YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAR-------------------------------ECKDVKIDR 304 (443)
Q Consensus 256 ~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~-------------------------------e~~~~~Id~ 304 (443)
|+.+.+|+.|.|+.+++|..-++.|.+.|-.+|+++-|++ .+.-.++|.
T Consensus 21 wktl~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd~i~a~~~ersL~ymGl~pnt~v~s~~~dk 100 (502)
T KOG0454|consen 21 WKTLFPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTDKILARASERSLVYMGLNPNTNVDSLMTDK 100 (502)
T ss_pred hhcccCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccchHHHHhhhhhceeeccCCCCcccceeeecc
Confidence 5678899999999999999999999999999999876643 112256789
Q ss_pred EEEeccCCCChHHHHHHHHHHHhCCCccc--c-cEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCcc
Q 013449 305 VYIGSCTGGKTEDFLAAAKVFLASGKKVK--V-PTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGA 381 (443)
Q Consensus 305 a~IGSCTng~~eDl~~aA~iL~~~g~kv~--v-~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~ 381 (443)
||||||||+|+|||+.||++++ |.|+. + ..+++|+|+.|..++..+ |+.++|.++|+.++ ..||+.
T Consensus 101 Vfigsctn~riedlr~aAaVv~--g~Kia~n~k~am~vpgsglvkk~aeae--------gld~if~eagF~wr-eagcs~ 169 (502)
T KOG0454|consen 101 VFIGSCTNIRIEDLREAAAVVD--GEKIAVNPKHAMFVPGSGLVKKVAEAE--------GLDRIFNEAGFYWR-EAGCSF 169 (502)
T ss_pred eeccccccccHHHHhhhhhccc--cceeEecccceEEecCchhhHhHHHHH--------hhHHHHHhhceehh-hccccc
Confidence 9999999999999999999999 77876 3 378999999999998865 47999999999995 899999
Q ss_pred ccCCCCCccccCCCCcEEEeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCccCCcccc
Q 013449 382 CLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 441 (443)
Q Consensus 382 C~G~~~~~~g~l~~gev~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I~dp~~~ 441 (443)
|+|++.+ .+-.-|+|-||+||||+||+|. +++++|+||...+|.++.|+..+-++.
T Consensus 170 clgmnpd---~l~~yercastsnRnfEgrqGa-~srThlma~s~qfAagi~~~~~~~~~~ 225 (502)
T KOG0454|consen 170 CLGMNPD---GLCHYERCASTSNRNFEGRQGA-DSRTHLMAASMQFAAGIGGHDLGFREF 225 (502)
T ss_pred cccCCch---hccHHHHhhhccCCCccccccc-cccchhhhhhHHhhccccccccccccc
Confidence 9998643 3666789999999999999997 699999999999999999998877654
No 37
>COG1679 Predicted aconitase [General function prediction only]
Probab=96.95 E-value=0.019 Score=59.33 Aligned_cols=298 Identities=12% Similarity=0.108 Sum_probs=170.1
Q ss_pred EEeeeEEEEcCCChHHHHHHHHHH--hCCCCcccCCC-cEEEeecCCCCC---CcHHHHHHHHHHHHHHHHcCcceeecc
Q 013449 24 WVNVDILMTHDVCGPGSFGIFKKE--FGENAKVWDRE-KIVIIPDHYIFT---SDERANRNVDILRDFCMEQNIKYFYDI 97 (443)
Q Consensus 24 ~~~vD~~~~hD~t~p~~~~~~~~~--~g~~~~v~~p~-~v~~~~DH~v~~---~~~~~~~~~~~~r~f~~~~gi~~f~~~ 97 (443)
...+|-+. ...-++.=++++++. +| .||.-|. .--..+|+.-+. -+++..+.+.++.+.-++.|+..-|..
T Consensus 46 sAhIsGvs-Y~tiG~AGL~Fle~lae~g--arV~VptTlNp~~~Dl~~w~~~gv~e~f~~~q~ri~~A~~~MGv~~t~TC 122 (403)
T COG1679 46 SAHISGVS-YKTIGDAGLEFLEDLAEMG--ARVSVPTTLNPAGVDLERWRELGVDEEFAEKQRRIAKAYESMGVRVTFTC 122 (403)
T ss_pred cceeccee-ecccchhHhHHHHHHHhcC--CeEEeeeccCcceecccchhhcCCChHHhHHHHHHHHHHHHcCCceeEec
Confidence 34566655 344454444444332 35 3555554 234567765542 356677777777778888898764433
Q ss_pred cccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhccceEEe---ecC----CE
Q 013449 98 KDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLL---KVP----PT 170 (443)
Q Consensus 98 ~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~tg~~~~---~vP----et 170 (443)
. +..-..+|+-|=-|. -.|..-+.=-..|+| -||.-.|+ ..++++++. |++.+ -.+ .+
T Consensus 123 t--PY~~~~~p~~Gd~~A-WaESsAV~fANSVlG--ArTnRegg---------p~aL~aAi~-Gr~P~yG~hl~EnR~~~ 187 (403)
T COG1679 123 T--PYLLGNLPSFGDHLA-WAESSAVSFANSVLG--ARTNREGG---------PLALAAAIT-GRTPLYGLHLDENRRPT 187 (403)
T ss_pred c--ccccCCCccccceee-eeccchhhhhhhhhh--hhccccCC---------HHHHHHHHh-CCCccccccccccccce
Confidence 2 233334455554444 345554444566777 48888884 455555554 34331 222 25
Q ss_pred EEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCceee--eccCChhHHHHh
Q 013449 171 LRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNG--VVPADGTTFKYL 248 (443)
Q Consensus 171 v~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~--~f~~D~~t~~yl 248 (443)
+.|+++..+... |.-.-+++-+ .|+.+++.=|-++.....++-.|--++.-+++..+ ++-....|=+|-
T Consensus 188 ~~v~ve~~~~~~----d~~~~~lGy~-----~G~~~~d~IP~~~~~~~p~~d~lKalgAA~atsgavam~HvegvTPE~~ 258 (403)
T COG1679 188 VIVEVEFPPKED----DSEYGALGYL-----AGEAAGDGIPYFRLALFPSEDELKALGAAMATSGAVAMYHVEGVTPEAR 258 (403)
T ss_pred EEEEEecCCCcc----hhhhHHHHHH-----HHHhccCCCCeeccCCCCCHHHHHHHHHHHhhcCceeEEEecCCCcccc
Confidence 667787766554 4433333322 23333333344444443344444444444444443 344444333332
Q ss_pred hhcCCCCCccccCCCCCcccEEEEEECCCcceeeecCCCCCcccccccccCceeeeEEEeccCCCChHHHHHHHHHHHhC
Q 013449 249 EDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLAS 328 (443)
Q Consensus 249 ~~r~~~~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eDl~~aA~iL~~~ 328 (443)
+ . +-..-...|+|+..++. +...-.+.+..++|.++|| |---+++.++..|++|+++
T Consensus 259 ~---------~---~~~d~~e~i~i~~~d~~----------da~~~l~~~~~epdli~iG-cPHaS~~E~~~la~~l~~r 315 (403)
T COG1679 259 A---------L---AFGDKAEKIEIEREDID----------DAWERLNTADGEPDLIALG-CPHASLEELRRLAELLKGR 315 (403)
T ss_pred c---------c---cccccCceeeeeHHHHH----------HHHHHhhcCCCCCCEEEeC-CCCCCHHHHHHHHHHHhcc
Confidence 0 0 00111234456655542 3333334555689999998 7777899999999999966
Q ss_pred CCcccccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccC
Q 013449 329 GKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLG 384 (443)
Q Consensus 329 g~kv~v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G 384 (443)
++..++.++|+ .|++|+.||.++| +++.++++|..+ . |.+|+-
T Consensus 316 ~~~~~~~~~V~-~sr~v~~~a~~~G--------~~~~le~~g~~v-v---~DtC~v 358 (403)
T COG1679 316 KRPAGVPLYVT-TSRAVYAQARKEG--------YLAKLEELGVKV-V---SDTCMV 358 (403)
T ss_pred CCCCCCCEEEE-cCHHHHHHHhhhh--------hHHHHHHcCCEE-e---cCceeE
Confidence 55566888776 6999999998864 699999999998 4 356875
No 38
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=95.52 E-value=0.04 Score=58.09 Aligned_cols=290 Identities=15% Similarity=0.178 Sum_probs=153.6
Q ss_pred CcHHHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCC--cccccccC
Q 013449 71 SDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAG--AFGQFATG 148 (443)
Q Consensus 71 ~~~~~~~~~~~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~G--alGala~G 148 (443)
-++...+.++++.+.-++.|+..-|. |-.++.. ..-..|+-+.=++|+...|- -+||-.-=
T Consensus 92 ~~~~~~~~q~~i~~a~~~mG~~~t~T----------------CtPY~~~-~~P~~Ge~iAW~ESsAV~yaNSVlGARTNr 154 (400)
T PF04412_consen 92 VDEEFAEKQKRIIDAYRKMGAQPTFT----------------CTPYLLG-NRPRFGEHIAWSESSAVIYANSVLGARTNR 154 (400)
T ss_pred CCHHHHHHHHHHHHHHHHcCCccccc----------------CcCccCC-CCCCCCCEEEEecccceeeeecccchhcCC
Confidence 35666777788888888888865332 2222222 12334566666666544321 12222221
Q ss_pred C-ChhHHHHHhccceEE---eecC----CEEEEEEEeeCCCCCChHHHHHHHHHHh-hccCCCceEEEEeccccccCChh
Q 013449 149 I-GNTDAGFVLGTGKVL---LKVP----PTLRFVLDGEMPDYLLAKDLILQIIGEI-SVAGATYKSMEFVGTTVERLSME 219 (443)
Q Consensus 149 v-G~td~a~~l~tg~~~---~~vP----etv~V~l~G~l~~gV~akDviL~i~~~l-~~~g~~~~~vEF~G~~v~~Ls~~ 219 (443)
- |-+++++|+ +|.+. +-+. .++.|+++..+.. .|..-.+++-+ |.. +..++==|.|--- ..+.+
T Consensus 155 eg~~~al~aAi-tGrtP~~G~hl~EnR~~~~~v~v~~~~~~----d~~~~~~LG~~iG~~-~~~~IPvi~g~~~-~p~~d 227 (400)
T PF04412_consen 155 EGGPSALAAAI-TGRTPYYGLHLDENRRATILVEVEAPPEE----DDADWGLLGYLIGKK-VGDRIPVITGLER-RPSED 227 (400)
T ss_pred CCcHHHHHHHH-hCCCCcccccCccCCCCeEEEEeCCCCCc----CcchHHHHHHHHHHh-cCCCcCeEeCCCC-CCCHH
Confidence 1 445565555 45443 2222 3688999888776 33333344442 211 1112222222111 35555
Q ss_pred hHhhHhhhhhhcCceeeeccCChhHHHHhhhcCCCCCccccCCCCCcccEEEEEECCCcceeeecCCCCCcccccccccC
Q 013449 220 ERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD 299 (443)
Q Consensus 220 ~R~ti~NMa~E~GA~~~~f~~D~~t~~yl~~r~~~~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~ 299 (443)
+-..++--..=.|+.. +|-....|= +...+...-+-. .++++|+.++|+-.... +..-.+
T Consensus 228 ~lK~lgAA~Atsgs~~-m~Hi~GvTP---------Ea~~~~~a~~~~-~e~i~i~~~dl~~~~~~---------l~~~~~ 287 (400)
T PF04412_consen 228 DLKALGAAMATSGSVA-MFHIVGVTP---------EAPTLEAAFGGK-AERITITDADLEEVYEE---------LNTAGD 287 (400)
T ss_pred HHHHHhhhhhccccee-eEEEeCCCC---------CCCcchhhhcCC-ceEEEeCHHHHHHHHHH---------hccCCC
Confidence 5444433222222222 232221111 011111111111 57889988877644332 213345
Q ss_pred ceeeeEEEeccCCCChHHHHHHHHHHHhCCCcccccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCC
Q 013449 300 VKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSC 379 (443)
Q Consensus 300 ~~Id~a~IGSCTng~~eDl~~aA~iL~~~g~kv~v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgC 379 (443)
.++|.++|| |=--+++.++..|++|++++++.+++++|+ .|+.|+.+|.+.| +.+.|+++|+.+ ..
T Consensus 288 ~~~D~V~lG-cPH~S~~El~~ia~ll~gr~~~~~~~~~i~-t~~~v~~~a~~~G--------~~~~le~~G~~i-v~--- 353 (400)
T PF04412_consen 288 EKVDLVALG-CPHLSLEELREIAELLEGRKVHPNVPLWIT-TSRAVYELAERMG--------YVERLEKAGVQI-VT--- 353 (400)
T ss_pred CCCCEEEEC-CCCCCHHHHHHHHHHHhCCCCCCCceEEEE-CCHHHHHHHHhCC--------HHHHHHHcCCEE-Ec---
Confidence 789999998 788889999999999995443355888776 6889999998764 799999999998 43
Q ss_pred ccccCCCCCccccCCCCcEEEee-cC--CCCCCCCCCCCCceEecCHH
Q 013449 380 GACLGGPKDTYARMNEPMVCVST-TN--RNFPGRMGHKEGQIYLASPY 424 (443)
Q Consensus 380 g~C~G~~~~~~g~l~~gev~vsT-~N--RNF~GR~G~~~~~~yLaSP~ 424 (443)
++|+-... ....+...|-| |. .+|-.++.. .+++++|=+
T Consensus 354 dTC~~v~p----~~~~~~~~v~TnS~K~a~Y~~~~~g--~~v~~~sl~ 395 (400)
T PF04412_consen 354 DTCMVVSP----IIPKGYKVVATNSGKAAHYLPGLCG--VKVRFGSLE 395 (400)
T ss_pred cccceecc----ccCCCCceEEECcHHHHHhccccCC--CceEecCHH
Confidence 34654311 12233333322 21 556666632 467776643
No 39
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=84.27 E-value=2.4 Score=44.78 Aligned_cols=296 Identities=17% Similarity=0.187 Sum_probs=145.2
Q ss_pred CeEEEeeeEEEEcCCChHHHHHHHHH--HhCCCCcccCCC-cEEEeecCC--CCCCcHHHHHHHHHHHHHHHHcCcceee
Q 013449 21 DNVWVNVDILMTHDVCGPGSFGIFKK--EFGENAKVWDRE-KIVIIPDHY--IFTSDERANRNVDILRDFCMEQNIKYFY 95 (443)
Q Consensus 21 d~v~~~vD~~~~hD~t~p~~~~~~~~--~~g~~~~v~~p~-~v~~~~DH~--v~~~~~~~~~~~~~~r~f~~~~gi~~f~ 95 (443)
++-.+.+|-+. +-..|+.-++++++ +.| .+|.-|. .--..+|+. ...-++...+.+.++.+.-++.|++.-|
T Consensus 33 ~I~~ahisGvs-y~tiG~agl~f~e~l~~~g--akv~VpTTlNp~~~D~~w~~~gvd~~f~~~q~~i~~ay~~mG~~~t~ 109 (389)
T cd01355 33 DIKSAHISGVS-YKTIGDAGLEFLERLADQG--AKVAVPTTLNPISMDLHWRELGVDEEFAEKQARLVKAYKAMGVDPTF 109 (389)
T ss_pred cccceEEccee-ecccchhhHHHHHHHHhCC--CeEeecCccCCcccCcchhhcCCCHHHHHHHHHHHHHHHHcCCcccc
Confidence 34455666665 33455555555554 344 3343332 112234543 1133566777888888888999987654
Q ss_pred cccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhccceEE--------eec
Q 013449 96 DIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVL--------LKV 167 (443)
Q Consensus 96 ~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~tg~~~--------~~v 167 (443)
... +.+--.+|..|=-+- ..|..-+.--..|+|+ .|..+| |-+++++|+ +|++. =|.
T Consensus 110 TCt--PY~~~~~P~~Ge~iA-WaESnAV~yANSVlGA--RTnreg---------g~~aLaaAi-tGr~P~~GlhldEnR~ 174 (389)
T cd01355 110 TCT--PYQLENLPKKGEHIA-WAESSAVVYANSVLGA--RTNREG---------GPSALAAAI-TGRTPEYGVHLDENRK 174 (389)
T ss_pred ccc--CccCCCCCCCCCeee-Eecccceeeeeccccc--cccCCC---------CHHHHHHHH-hCCCCccccccccCcC
Confidence 332 111112233332222 2343333333445553 445555 456666666 44443 244
Q ss_pred CCEEEEEEEeeCCCCCChHHHHHHHHHHh-hccCCCceEEEEeccccccCChhhHhhHhhhhhhcCceeeeccCChhHHH
Q 013449 168 PPTLRFVLDGEMPDYLLAKDLILQIIGEI-SVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFK 246 (443)
Q Consensus 168 Petv~V~l~G~l~~gV~akDviL~i~~~l-~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~f~~D~~t~~ 246 (443)
|. +.|+++..... .|.---+++-+ |.. ...++==|.|-. ...+.|+.-.+|--..=.|+.. +|-..
T Consensus 175 ~~-~~v~v~~~~~~----d~~~~~~LG~~iG~~-~~~~IP~i~gl~-~~p~~d~LKalgAA~Atsgs~a-m~Hi~----- 241 (389)
T cd01355 175 AR-LIVEVEAAEPL----DDSDYGALGYLVGKI-AGDRIPVITGLD-ARPSEDELKALGAAMATSGSVA-MFHIV----- 241 (389)
T ss_pred Ce-EEEEeccCCCc----cccchhHHHHhhccc-cCCCCCeeecCC-CCCCHHHHHHHhHHHhhcccce-eEEEe-----
Confidence 44 44888733221 34333344222 110 001110122211 1234444444443333333322 22211
Q ss_pred HhhhcCCCCCccccCCC---CCcccEEEEEECCCcceeeecCCCCCcccccccccCceeeeEEEeccCCCChHHHHHHHH
Q 013449 247 YLEDKTSLPYEPVYSDE---KASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAK 323 (443)
Q Consensus 247 yl~~r~~~~~~~l~~D~---~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eDl~~aA~ 323 (443)
.++|.. ...-.++++|+-++|+-.... +. -.+.++|.++|| |=--+++.++.-|+
T Consensus 242 -----------gvTPE~~~~~~~~~e~i~i~~~dl~~~~~~---------~~-~~~~~~dlv~lG-cPH~Sl~E~~~la~ 299 (389)
T cd01355 242 -----------GVTPEAPTLGLDAAETVELTRADLDEAREN---------LN-ADGSEPDLVVLG-CPHASLEELRKLAD 299 (389)
T ss_pred -----------CCCCCCcccCCCcceEEEecHHHHHHHHHh---------hc-CcccCCCEEEec-CCCCCHHHHHHHHH
Confidence 122211 112224667774444221110 01 111268999995 78888999999999
Q ss_pred HHHhCCCccc--ccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccC
Q 013449 324 VFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLG 384 (443)
Q Consensus 324 iL~~~g~kv~--v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G 384 (443)
+|+ |++.+ ++++|+ .|+.|| +.+. |+.+.++++|+.+ ..-+|- |+-
T Consensus 300 ll~--g~~~~~~~~~~v~-t~r~v~--a~~~--------g~~~~ie~~G~~i-~~DtC~-~v~ 347 (389)
T cd01355 300 LLA--GRRVAPSVPLYVT-TSRAVY--AKRM--------GYVDVIEKLGARV-LTDTCM-VVS 347 (389)
T ss_pred Hhc--CCccCCCCCEEEE-ccHHHH--Hhhc--------cHHHHHHHcCCEE-Eeeecc-eee
Confidence 998 65443 677665 577887 4433 4799999999999 454444 443
No 40
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=44.75 E-value=99 Score=32.83 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=48.1
Q ss_pred ceeeeEEEeccCCCC--hHHHHHHHHHHHhCCCcccccEEEeCCcHHHH-HHHhcCCCCC---CCCchHHHHHHHcCccc
Q 013449 300 VKIDRVYIGSCTGGK--TEDFLAAAKVFLASGKKVKVPTFLVPATQKVW-MDVYTLPVPG---SGGKTCSQIFEEAGCDT 373 (443)
Q Consensus 300 ~~Id~a~IGSCTng~--~eDl~~aA~iL~~~g~kv~v~~~v~P~S~~v~-~~a~~~g~~g---~~~~~~~~~l~~aGa~~ 373 (443)
++|.+|-|-.|+--. --.|.-+-++. +.|.|+.|++.+-|.|.... .. .|++- ....-+.+.|.+.|+..
T Consensus 32 v~I~~ahisGvsy~tiG~agl~f~e~l~-~~gakv~VpTTlNp~~~D~~w~~---~gvd~~f~~~q~~i~~ay~~mG~~~ 107 (389)
T cd01355 32 IDIKSAHISGVSYKTIGDAGLEFLERLA-DQGAKVAVPTTLNPISMDLHWRE---LGVDEEFAEKQARLVKAYKAMGVDP 107 (389)
T ss_pred ccccceEEcceeecccchhhHHHHHHHH-hCCCeEeecCccCCcccCcchhh---cCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 477788888887722 23444433433 45878999999999986321 11 01000 00012578899999985
Q ss_pred cCCCCCccccC
Q 013449 374 PASPSCGACLG 384 (443)
Q Consensus 374 ~~~pgCg~C~G 384 (443)
.++|.|=.-
T Consensus 108 --t~TCtPY~~ 116 (389)
T cd01355 108 --TFTCTPYQL 116 (389)
T ss_pred --cccccCccC
Confidence 589988743
No 41
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=39.37 E-value=2.3e+02 Score=30.26 Aligned_cols=120 Identities=23% Similarity=0.256 Sum_probs=69.2
Q ss_pred ceeeeEEEeccCCC-ChHHHHHHHHHHHhCCCcccccEEEeCCcHHH--HHHHhcCCCCCC---CCchHHHHHHHcCccc
Q 013449 300 VKIDRVYIGSCTGG-KTEDFLAAAKVFLASGKKVKVPTFLVPATQKV--WMDVYTLPVPGS---GGKTCSQIFEEAGCDT 373 (443)
Q Consensus 300 ~~Id~a~IGSCTng-~~eDl~~aA~iL~~~g~kv~v~~~v~P~S~~v--~~~a~~~g~~g~---~~~~~~~~l~~aGa~~ 373 (443)
++|.+|-|-+|+-. .-..|.-+-++++ .|-|+.|++.+-|.+... |.+. |.+-. ...-+.+.|.+.|+..
T Consensus 39 V~I~~aHi~g~~y~iG~~gl~f~e~l~~-~ga~v~VptT~Np~~~D~~~~~~~---~~~~~~~~~q~~i~~a~~~mG~~~ 114 (400)
T PF04412_consen 39 VPITSAHISGVSYKIGDAGLEFLEDLAD-MGARVRVPTTLNPIGMDLERWREL---GVDEEFAEKQKRIIDAYRKMGAQP 114 (400)
T ss_pred eeeeceEEcceecccCchhhHHHHHHHh-CCCCEEecCccCcceeccccHhhc---CCCHHHHHHHHHHHHHHHHcCCcc
Confidence 57888999888864 2345655555554 477888999988887654 2211 11000 0012577899999975
Q ss_pred cCCCCCccccCCCCCccccCCCCcEE-------EeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCccCC
Q 013449 374 PASPSCGACLGGPKDTYARMNEPMVC-------VSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTD 437 (443)
Q Consensus 374 ~~~pgCg~C~G~~~~~~g~l~~gev~-------vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I~d 437 (443)
.++|.|=.-.+ .+..||.. |.=.|-=+=-|-. +. +-+++-++||+|++..
T Consensus 115 --t~TCtPY~~~~-----~P~~Ge~iAW~ESsAV~yaNSVlGARTN-re------g~~~al~aAitGrtP~ 171 (400)
T PF04412_consen 115 --TFTCTPYLLGN-----RPRFGEHIAWSESSAVIYANSVLGARTN-RE------GGPSALAAAITGRTPY 171 (400)
T ss_pred --cccCcCccCCC-----CCCCCCEEEEecccceeeeecccchhcC-CC------CcHHHHHHHHhCCCCc
Confidence 58888877431 23345432 2222211111111 11 4467888999999753
No 42
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=29.16 E-value=24 Score=31.31 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.7
Q ss_pred CCCCCceEecCHHHHHHHHhc
Q 013449 412 GHKEGQIYLASPYTAAASALT 432 (443)
Q Consensus 412 G~~~~~~yLaSP~tvaAsAl~ 432 (443)
|+..+..|++.|.+.|+|||+
T Consensus 118 gSls~sawv~apl~la~sala 138 (143)
T PF01456_consen 118 GSLSSSAWVCAPLLLAVSALA 138 (143)
T ss_pred CCcccchHHHHHHHHHHHHHH
Confidence 666688999999999999986
No 43
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=25.63 E-value=2e+02 Score=31.20 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=32.4
Q ss_pred EEEEEECCCcceeeecCCCCCcccccccccCceeeeEEEeccCCCChHH
Q 013449 269 SEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTED 317 (443)
Q Consensus 269 ~~i~iDls~leP~Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eD 317 (443)
.-+-||..++-|.+..-.-|.+.-...=....-|-.+=|||+..||.++
T Consensus 346 H~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~ 394 (460)
T PRK13237 346 HAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPK 394 (460)
T ss_pred eEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCC
Confidence 6788999999888865555554433322223345567799999998654
No 44
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=25.60 E-value=43 Score=32.12 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=9.4
Q ss_pred cCCChHHHHHHHHHHhC
Q 013449 33 HDVCGPGSFGIFKKEFG 49 (443)
Q Consensus 33 hD~t~p~~~~~~~~~~g 49 (443)
+|..+-+++++|++ +|
T Consensus 10 yDSFtyNLv~yl~~-lg 25 (191)
T COG0512 10 YDSFTYNLVQYLRE-LG 25 (191)
T ss_pred ccchHHHHHHHHHH-cC
Confidence 45555666677753 44
No 45
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=23.03 E-value=1.2e+02 Score=31.26 Aligned_cols=61 Identities=21% Similarity=0.180 Sum_probs=42.3
Q ss_pred CCCCCChHH-HHHHHHHHhhccCCC---ceEEEEeccccccCChhhHhhHhhhhhhcCceeeeccCChhHHH
Q 013449 179 MPDYLLAKD-LILQIIGEISVAGAT---YKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFK 246 (443)
Q Consensus 179 l~~gV~akD-viL~i~~~l~~~g~~---~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~f~~D~~t~~ 246 (443)
++||=+.|| |+|+|++.--+.|-. +-++| |. .=.--..|+-.|.-+|-++-+.-||+...+
T Consensus 73 ~NPggS~KDRvAl~iir~Aee~GkL~~gg~v~E--Gt-----aGsTgIslA~v~~a~Gyk~~I~mPddqs~e 137 (391)
T KOG1481|consen 73 LNPGGSVKDRVALYIIRTAEEKGKLVRGGTVVE--GT-----AGSTGISLAHVARALGYKCHIYMPDDQSQE 137 (391)
T ss_pred cCCCCChhhhhHHHHHHHHHHcCCcccCceEEe--cC-----CCccchhHHHhhhhcCcceEEECCChHHHH
Confidence 689999999 999999887655532 22333 22 222234577778889999998888876554
No 46
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=21.18 E-value=1e+02 Score=22.60 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=24.0
Q ss_pred cccCCCCCeeeeeeecccc-eecCCceEEcCCC
Q 013449 103 FKANPDYKGVCHIALAQEG-HCRPGEVLLGTDS 134 (443)
Q Consensus 103 ~~~~ppg~GI~Hq~l~e~~-~~~PG~~vvg~DS 134 (443)
+.|.+|-.|.+..+..++| .++.||+++-=|+
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~ 35 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDS 35 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECc
Confidence 3455667799988877766 7889998887665
No 47
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=20.85 E-value=2.6e+02 Score=29.69 Aligned_cols=94 Identities=18% Similarity=0.134 Sum_probs=54.6
Q ss_pred HHHHHHHHHhC--CCcccccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCc---ccc
Q 013449 318 FLAAAKVFLAS--GKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDT---YAR 392 (443)
Q Consensus 318 l~~aA~iL~~~--g~kv~v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~---~g~ 392 (443)
+.-||..|++. ..+-.|+++.-|+ |++.+ | ....++.|+.- .+ |-..+|.|... .|.
T Consensus 111 lLgaA~~L~~~~~~~~Gtv~~ifQPA---------EE~~~-----G-a~~mi~~G~~~--~~-vD~v~g~H~~p~~~~g~ 172 (392)
T COG1473 111 LLGAALALAEHKDNLPGTVRLIFQPA---------EEGGG-----G-AKAMIEDGVFD--DF-VDAVFGLHPGPGLPVGT 172 (392)
T ss_pred HHHHHHHHHhhhhhCCcEEEEEeccc---------ccccc-----c-HHHHHhcCCcc--cc-ccEEEEecCCCCCCCce
Confidence 45566777643 3333499999984 34321 3 57799999753 45 99999986421 122
Q ss_pred --CCCCcEEEe--ecCCCCCCCCCCCCCceEecCHHHHHHHH
Q 013449 393 --MNEPMVCVS--TTNRNFPGRMGHKEGQIYLASPYTAAASA 430 (443)
Q Consensus 393 --l~~gev~vs--T~NRNF~GR~G~~~~~~yLaSP~tvaAsA 430 (443)
+.+|.+..+ .-.=.|+||-|+. +.=+++.=+++||+.
T Consensus 173 v~~~~G~~~aa~d~~~i~~~GkggH~-a~Ph~~~d~i~aa~~ 213 (392)
T COG1473 173 VALRPGALMAAADEFEITFKGKGGHA-AAPHLGIDALVAAAQ 213 (392)
T ss_pred EEeecccceeecceEEEEEEeCCccc-CCcccccCHHHHHHH
Confidence 233332211 1123578888885 666666555555553
No 48
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=20.21 E-value=1.3e+02 Score=33.47 Aligned_cols=35 Identities=29% Similarity=0.223 Sum_probs=25.2
Q ss_pred CCCCCChHHHHHHHHHHhhccCCCceEEEEecccccc
Q 013449 179 MPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVER 215 (443)
Q Consensus 179 l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~ 215 (443)
.|-++--+|+.-.+-+.+++.| +.-+||.=+++.+
T Consensus 55 ~p~h~hl~~l~~~vk~~i~~aG--g~p~ef~t~~v~D 89 (575)
T COG0129 55 VPGHQHLKDLAQLVKEGIREAG--GVPVEFGTIAVCD 89 (575)
T ss_pred cCchhhHHHHHHHHHHHHHHcC--CceeEeCCCCccC
Confidence 4566777888888888888777 5678888655544
Done!