Query 013449
Match_columns 443
No_of_seqs 132 out of 1254
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 10:47:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c96_A Mitochondrial aconitase 100.0 7E-123 3E-127 1009.6 40.0 414 1-440 35-483 (753)
2 2b3y_A Iron-responsive element 100.0 4E-116 1E-120 966.5 28.2 426 1-436 52-566 (888)
3 1l5j_A Aconitate hydratase 2; 100.0 2E-112 6E-117 932.7 41.1 405 1-442 382-827 (865)
4 1usm_A DCOH, hepatocyte nuclea 27.4 97 0.0033 24.0 5.1 39 153-191 33-71 (80)
5 3jst_A Putative pterin-4-alpha 24.7 93 0.0032 25.0 4.7 40 152-191 50-89 (97)
6 2ebb_A Pterin-4-alpha-carbinol 21.6 1.3E+02 0.0043 24.5 5.0 40 152-191 46-85 (101)
7 3hxa_A Pterin-4-alpha-carbinol 20.6 1.4E+02 0.0049 24.3 5.1 40 152-191 54-93 (104)
8 2v6u_A Pterin-4A-carbinolamine 20.5 1.2E+02 0.0043 24.6 4.7 40 152-191 53-92 (104)
9 3ewt_E Tumor necrosis factor r 20.0 81 0.0028 19.6 2.6 16 76-91 10-25 (25)
10 1ru0_A DCOH-like protein dcohm 19.1 1.5E+02 0.005 24.2 4.9 39 153-191 57-95 (105)
No 1
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=100.00 E-value=7.4e-123 Score=1009.65 Aligned_cols=414 Identities=26% Similarity=0.386 Sum_probs=379.6
Q ss_pred CCHHHHHHHhhcCCCC----CCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCC-----
Q 013449 1 MTLTEKIFSRASEKPQ----LSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTS----- 71 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~~~----v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~----- 71 (443)
|||+||||++|+++.. +++||++.+++|++++||+|+|+++..|+. +|. .++++|+++ ++||++|+.
T Consensus 35 ~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~-~G~-~~v~~P~~~--~~DH~v~~~~~~~~ 110 (753)
T 1c96_A 35 LTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS-SGL-PKVAVPSTI--HCDHLIEAQLGGEK 110 (753)
T ss_dssp CCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHH-HTC-SSCSSCEEE--ECCSSCCBSSCHHH
T ss_pred CCHHHHHHHHHhCCcccccccCCCCEEEEEccEEEEeccccHHHHHHHHH-hCC-CCCCCCCce--ecCCCCCCCCCccc
Confidence 7999999999998752 367899999999999999999999999965 674 579999874 799999987
Q ss_pred c-----HHHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccc
Q 013449 72 D-----ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFA 146 (443)
Q Consensus 72 ~-----~~~~~~~~~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala 146 (443)
+ +...++++++|+||+++||. ||+ |++|||||+++|. ++.||+++||+||||||+||||+||
T Consensus 111 d~~~~~~~n~e~~~~l~~~a~~~gi~-~~~-----------pg~GI~Hqv~~E~-~~~Pg~~ivGtDSHT~t~GalG~la 177 (753)
T 1c96_A 111 DLRRAKDINQEVYNFLATAGAKYGVG-FWR-----------PGSGIIHQIILEN-YAYPGVLLIGTDSHTPNGGGLGGIC 177 (753)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTCE-EEC-----------TTSBCHHHHHHHH-TCCTTCEEEESSTTGGGGGGGTCEE
T ss_pred chhhhhhhHHHHHHHHHHHHHHCCCE-EEC-----------CCCCeeCeEeccc-ccCCCcEEecCCCCCCccchhhhhe
Confidence 2 23447789999999999994 554 5799999998886 9999999999999999999999999
Q ss_pred cCCChhHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhh
Q 013449 147 TGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCN 226 (443)
Q Consensus 147 ~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~N 226 (443)
||||++|++.+|+++++||++||+|+|+|+|+|++|||+|||||+|+++|+++|++||+|||+||||++||+++||||||
T Consensus 178 ~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~~LS~~~R~TI~N 257 (753)
T 1c96_A 178 IGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICN 257 (753)
T ss_dssp EECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGGGSCHHHHHHHHH
T ss_pred eccCHHHHHHHHhCCeeeccCCcEEEEEEeeecCCCccHHHHHHHHHHHhccCCcceEEEEEECCccccCCcchhhhhhc
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCceeeeccCChhHHHHhhhcCCC--------CCccccCCCCCcccEEEEEECCCcceeeecCCCCCccccccccc
Q 013449 227 MVVEAGGKNGVVPADGTTFKYLEDKTSL--------PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECK 298 (443)
Q Consensus 227 Ma~E~GA~~~~f~~D~~t~~yl~~r~~~--------~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~ 298 (443)
|++|+||++|+||+|++|++||+.+++. .|+.+.+|+||.|+++++||||+|+|+||+|++|+|++|++|+.
T Consensus 258 Ma~E~GA~~gifp~De~T~~YL~~~gr~~~~~~~~~y~~~l~~D~~A~Yd~~ieiDls~leP~va~P~~P~~~~~v~e~~ 337 (753)
T 1c96_A 258 MGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEVG 337 (753)
T ss_dssp HGGGGTCSEEECCCCHHHHHHHHHTTCHHHHHHHHHTGGGSSCCTTCCCSEEEEEEGGGCCCEEECSSSTTCEEEHHHHH
T ss_pred cchhhCcccccccCcHHHHHHHHhcCCcHHHHHHHHHHhhccCCCCCceeEEEEEEccccceeecCCCCCcceeEhHHhh
Confidence 9999999999999999999999998872 23678899999999999999999999999999999999999999
Q ss_pred Cc--------eeeeEEEeccCCCChHHHHHHHHHHHh---CCCcccccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHH
Q 013449 299 DV--------KIDRVYIGSCTGGKTEDFLAAAKVFLA---SGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFE 367 (443)
Q Consensus 299 ~~--------~Id~a~IGSCTng~~eDl~~aA~iL~~---~g~kv~v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~ 367 (443)
+. +||+||||||||+|+|||++||.|||+ +|++.+||++|+|+|++|+.++.++| ++++|.
T Consensus 338 ~~~~~~~~~~~Vd~~~IGSCTN~~~~Dl~~AA~ilkga~~~~v~~~V~~~v~PgS~~V~~~~~~~G--------l~~~l~ 409 (753)
T 1c96_A 338 SVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDG--------YAQVLR 409 (753)
T ss_dssp HHHHHHTCCCBEEEEEEBTTTBCSHHHHHHHHHHHHHHHTTTCCCSSEEEECCSBHHHHHHHHHTT--------HHHHHH
T ss_pred hhHhhcCCccceEEEEEecCCCCCHHHHHHHHHHhccHhhcCCCCCceEEEeCCCHHHHHHHHHcC--------cHHHHH
Confidence 88 999999999999999999999999997 66677799999999999999999975 799999
Q ss_pred HcCccccCCCCCccccCCCCCccccCCCCcEEEeecCCCCCCCC-CCCCCceEecCHHHHHHHHhcCccC-Cccc
Q 013449 368 EAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTGYVT-DPRE 440 (443)
Q Consensus 368 ~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GR~-G~~~~~~yLaSP~tvaAsAl~G~I~-dp~~ 440 (443)
+|||.| .+||||+|+|++.+..+..+++++|+||+||||+||| |++.+++|||||++||||||+|+|+ ||+.
T Consensus 410 ~aG~~i-~~~gCg~CiG~~~~~~~~~~~~~~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~ 483 (753)
T 1c96_A 410 DVGGIV-LANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPET 483 (753)
T ss_dssp HTTEEE-CCSSCGGGGTCBCCCSSCTTCCEEEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTT
T ss_pred HcCcEE-ecCCceeeecCCCCcccccCCcceEEecccCCcccccCCCCCCceeecCHHHHHHHHHcCCcccCccc
Confidence 999999 6999999999976432345667789999999999999 5778899999999999999999999 7763
No 2
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=100.00 E-value=3.5e-116 Score=966.50 Aligned_cols=426 Identities=22% Similarity=0.315 Sum_probs=376.6
Q ss_pred CCHHHHHHHhhcCC-CCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHH------hCCCCcccCCC-cEEEeecCCCCCCc
Q 013449 1 MTLTEKIFSRASEK-PQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKE------FGENAKVWDRE-KIVIIPDHYIFTSD 72 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~-~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~------~g~~~~v~~p~-~v~~~~DH~v~~~~ 72 (443)
.|++||++.++++- +..++|+++.+++|++++||+|+|+++..|+.+ +|......+|. ++++++||++|+.+
T Consensus 52 ~~~~~~~v~~~~~~~~~~~~~~~i~~~pdrvl~qD~Tg~~a~~~l~~mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~ 131 (888)
T 2b3y_A 52 FLVKKQDIENILHWNVTQHKNIEVPFKPARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDF 131 (888)
T ss_dssp SSSCHHHHHHHHTHHHHTTTTCEEEECCSEEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSS
T ss_pred cchhHHHHHHHhcccccCCCCCEEEEeccEEEEEccccHHHHHHHHHHHHHHHhcCCChhhcCCCCCeeEEeCCCCCcCC
Confidence 37889999998863 335789999999999999999999999887542 25444444677 48999999999876
Q ss_pred HH--HHHHHHHHHHHHHHcCccee--ecccccCCcccCCCCCeeeeeeecc---------cceecCCceEEcCCCCccCC
Q 013449 73 ER--ANRNVDILRDFCMEQNIKYF--YDIKDLGNFKANPDYKGVCHIALAQ---------EGHCRPGEVLLGTDSHTCTA 139 (443)
Q Consensus 73 ~~--~~~~~~~~r~f~~~~gi~~f--~~~~~~~~~~~~ppg~GI~Hq~l~e---------~~~~~PG~~vvg~DSHT~t~ 139 (443)
.. .+..++.+++|.|+++++.| |....+.||++.|||+|||||++.| +|++.|| +||||||||||+
T Consensus 132 ~~~~da~~~n~~~e~~rN~e~~~fL~w~~~~f~~~~~~~pG~GI~Hqv~lE~la~~v~~~~G~~~P~-tlVGtDSHT~t~ 210 (888)
T 2b3y_A 132 NRRADSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPD-SLVGTDSHTTMI 210 (888)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECTTSCCHHHHHHHTTCCSEEEETTEEEEC-EEEESSGGGGGG
T ss_pred ccccCHHHHHHHHHHHHhcchHHHHHHHHHhccCCCCCCCCCCCcceehhhhccccccccCcccccC-eEEecCCCcccc
Confidence 33 45566778899999988766 6777788999999999999999888 8999995 899999999999
Q ss_pred CcccccccCCChhHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChh
Q 013449 140 GAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSME 219 (443)
Q Consensus 140 GalGala~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~ 219 (443)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||+|||||+|+++|+++|++||+|||+|+|+++||++
T Consensus 211 GglG~la~GVGg~eae~~mag~~~~~~~PevvgV~ltG~L~~gVtakDviL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~ 290 (888)
T 2b3y_A 211 DGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIA 290 (888)
T ss_dssp GGGTCEEEECCHHHHHHHHTTCCEEEECCCEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCTTCEEEEESGGGTTSCHH
T ss_pred CcceeEEEccCHHHHHHHHhcCcEeecCCCEEEEEEEccCCCCcchhHHHHHHHHHhccCCccceEEEEecCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhHhhhhhhcCceeeeccCChhHHHHhhhcCCCC--------C-------ccccCC-CCCcccEEEEEECCCcceeee
Q 013449 220 ERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP--------Y-------EPVYSD-EKASFLSEYRFDISKLEPLVA 283 (443)
Q Consensus 220 ~R~ti~NMa~E~GA~~~~f~~D~~t~~yl~~r~~~~--------~-------~~l~~D-~~a~Y~~~i~iDls~leP~Va 283 (443)
+|||||||++|+||++|+||+|++|++||+.+++.+ | +.+.+| ++|+|+++++||||+|||+||
T Consensus 291 ~R~TI~NMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~~~~~e~y~~a~~l~~~l~~d~~dA~Yd~~ieiDLs~leP~VA 370 (888)
T 2b3y_A 291 DRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCS 370 (888)
T ss_dssp HHHHHHHTHHHHTCSEEECCCCHHHHHHHHHTTCCHHHHHHHHHHHHHHTCCCCTTCGGGCCCCSEEEEEEGGGCCSEEE
T ss_pred chhhhhhcchhhCCeeEEecCcHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhccCCCCCCCceEEEEEEEhhheeEeec
Confidence 999999999999999999999999999999987743 2 222345 899999999999999999999
Q ss_pred cCCCCCccccccccc--------------Cc-------------------------eeeeEEEeccCCCChHHHHHHHHH
Q 013449 284 KPHSPDNRALARECK--------------DV-------------------------KIDRVYIGSCTGGKTEDFLAAAKV 324 (443)
Q Consensus 284 ~P~~p~n~~~v~e~~--------------~~-------------------------~Id~a~IGSCTng~~eDl~~aA~i 324 (443)
+|++|+|++|++++. |. +|++||||||||+|+||+++||+|
T Consensus 371 gP~~P~~~~plse~~~~~~~~l~~~~g~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~l 450 (888)
T 2b3y_A 371 GPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGL 450 (888)
T ss_dssp CSSCTTCEEEGGGHHHHHHHHHHSCSBTTBCCCCGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHH
T ss_pred CCCCcccccChHHhhhhHHHhhhcccccccccccchhhcccceeecCCccccccCCcEEEEEEecCCCCCcHHHHHHHHH
Confidence 999999999998764 11 478999999999999999999999
Q ss_pred HHh----CCCccc--ccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccc----cCC
Q 013449 325 FLA----SGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA----RMN 394 (443)
Q Consensus 325 L~~----~g~kv~--v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g----~l~ 394 (443)
|++ +|+|++ ||++|+|+|++|+.++.++| ++++|.+|||.+ .+||||+|+|++++... .+.
T Consensus 451 Lak~A~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~G--------l~~~l~~aGf~i-~~~GC~~CiG~~~~l~~~~~~~i~ 521 (888)
T 2b3y_A 451 LAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESG--------VMPYLSQLGFDV-VGYGCMTCIGNSGPLPEPVVEAIT 521 (888)
T ss_dssp HHHHHHHTTCCCCTTSEEEECCSSHHHHHHHHHTS--------CHHHHHHTTCCB-CCSSCGGGGTCCCCCCHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCceEEEeCCCHHHHHHHHHcC--------cHHHHHHcCCEE-eCCCCcceeCCCCCCCchhhhhhc
Confidence 943 388887 99999999999999999976 599999999999 69999999999754211 112
Q ss_pred CCc---EEEeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCccC
Q 013449 395 EPM---VCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVT 436 (443)
Q Consensus 395 ~ge---v~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I~ 436 (443)
+|| ++|||+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 522 ~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AiaG~i~ 566 (888)
T 2b3y_A 522 QGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIR 566 (888)
T ss_dssp HHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHHHHHHCBSC
T ss_pred cCCeeEEEEeccCCCcCcCCCCCccccEecCHHHHHHHHhcCeee
Confidence 366 569999999999999988899999999999999999998
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=1.7e-112 Score=932.67 Aligned_cols=405 Identities=24% Similarity=0.344 Sum_probs=369.7
Q ss_pred CCHHHHHHHhhcCCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHHHHHHH
Q 013449 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD 80 (443)
Q Consensus 1 ~Tl~EKIl~~~~~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~~~~~~ 80 (443)
|||+||||++|+|.+.|+|||+|.+++|++++||+|+|++.+.|++ +| ..+|+|++++.++||.++.++....+.++
T Consensus 382 ~TlaEKIl~~~~g~~~v~~G~~v~~~~D~v~~qD~Tg~~~~~~~~~-lg--~~~~~~d~vv~~~dh~~~~~~~~~~e~~~ 458 (865)
T 1l5j_A 382 FSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKD-LA--CLGFSADLVMQSFCHTAAYPKPVDVNTHH 458 (865)
T ss_dssp CCHHHHHHHHTTTSSCCCTTCEECCBCSEEEECTTTHHHHHHHHHH-TT--CCSCCSSCEEECCCSSSSSCCHHHHHHHH
T ss_pred ccHHHHHHHHHhCCCccCCCCEEEEEeeEEEEeccCcHHHHHHHHH-cC--CCcCCCCeEEEECCCCCcCCCHHHHHHHH
Confidence 6999999999999888999999999999999999999999999975 66 35899999999999999999999999999
Q ss_pred HHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhcc
Q 013449 81 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT 160 (443)
Q Consensus 81 ~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~t 160 (443)
.+++|++++++. || |||+|||||++.| ++.||+++||+||||||+|+ +|+|.|++|++.+|++
T Consensus 459 ~~~~Fa~~~g~~-~~-----------~pg~GI~Hq~l~~--~~~PG~~ivGtDSHT~~~~G---lg~g~G~g~vA~a~at 521 (865)
T 1l5j_A 459 TLPDFIMNRGGV-SL-----------RPGDGVIHSWLNR--MLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAAT 521 (865)
T ss_dssp HHHHHHHTTTCE-EC-----------CTTSBCHHHHHGG--GCCTTCEEEESSTTCCCSSS---EECCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCe-Ee-----------CCCCceeeeeecc--cccccceEEeCCCCcccccc---ceeCccHHHHHHHHHc
Confidence 999999999984 44 4679999998764 99999999999999999995 5668899999999999
Q ss_pred ceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHh------hc------cCCCceEEEEeccccccCChhhHhhHhhhh
Q 013449 161 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEI------SV------AGATYKSMEFVGTTVERLSMEERMTLCNMV 228 (443)
Q Consensus 161 g~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l------~~------~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa 228 (443)
|++|+++||+|+|+|+|+|++|||+|||||+|++.+ ++ ++++||+|||. |+++||+++|||||||+
T Consensus 522 G~~~~~vPevv~V~l~G~L~~gVtaKDvIL~i~~~~i~~G~l~v~k~g~~~~~~G~~vEf~--Gv~~LS~~~R~TI~NMa 599 (865)
T 1l5j_A 522 GVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIE--GLPDLKVEQAFELTDAS 599 (865)
T ss_dssp SBCCEECCCEEEEEEESCCCTTCCHHHHHHHHHHHHHHTTSBCSCSTTCCBTTTTSEEEEE--SCTTCCHHHHHHHHHGG
T ss_pred CceeecCCCEEEEEEEeeCCCCCChHHHHHHHHHHHHhcccccccccCcccceeeEEEEEc--ccccCChhhhhhHhhcc
Confidence 999999999999999999999999999999996543 33 45689999994 79999999999999999
Q ss_pred hhcCceeeeccCC-hhHHHHhhh----------cCCC-------------C----CccccCCCCCcccEEEEEECCCc-c
Q 013449 229 VEAGGKNGVVPAD-GTTFKYLED----------KTSL-------------P----YEPVYSDEKASFLSEYRFDISKL-E 279 (443)
Q Consensus 229 ~E~GA~~~~f~~D-~~t~~yl~~----------r~~~-------------~----~~~l~~D~~a~Y~~~i~iDls~l-e 279 (443)
+|+||++|+||+| ++|++||+. +++. + +..+.+|+||.|+++++||||+| |
T Consensus 600 ~E~GA~~g~f~~dDe~t~~YL~~~~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~D~dA~Y~~~ieiDLs~l~e 679 (865)
T 1l5j_A 600 AERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADADAEYAAVIDIDLADIKE 679 (865)
T ss_dssp GTTTCSEEEECCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSCCCCCCCTTCCCSEEEEEEGGGCCS
T ss_pred hhcCCeeEEEeCCHHHHHHHHHhhhhhhhhhhccCCccchhHHHHHHHHHHHHhccceeccCCCCcEEEEEEEEcccCCC
Confidence 9999999999966 788999997 3431 1 23478999999999999999999 8
Q ss_pred eeeecCCCCCcccccccccCceeeeEEEeccCCCChHHHHHHHHHHHhCCCcccccEEEeCCcHHHHHHHhcCCCCCCCC
Q 013449 280 PLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGG 359 (443)
Q Consensus 280 P~Va~P~~p~n~~~v~e~~~~~Id~a~IGSCTng~~eDl~~aA~iL~~~g~kv~v~~~v~P~S~~v~~~a~~~g~~g~~~ 359 (443)
|+||+|++|+|++|++++++.+||+||||||||+ ++||++||+|||++.++.+||++|+|+|++|+.++.++|
T Consensus 680 P~VA~P~~Pd~~~~vse~~~~~Id~v~IGSCTtn-~eDl~~AA~ilkg~~v~~~v~~~V~PgS~~V~~~l~~eG------ 752 (865)
T 1l5j_A 680 PILCAPNDPDDARPLSAVQGEKIDEVFIGSCMTN-IGHFRAAGKLLDAHKGQLPTRLWVAPPTRMDAAQLTEEG------ 752 (865)
T ss_dssp CEEECTTCTTCEEEGGGTTTCBCCEEEECSTTCC-HHHHHHHHHHHHHSCSCCSSEEEECCSBHHHHHHHHHTT------
T ss_pred CEecCCCChHhccchhhhcccccceEEEecCCCC-HHHHHHHHHHHcCcccCCCCCEEEECCCHHHHHHHHHcC------
Confidence 9999999999999999999999999999999888 999999999999543333499999999999999999975
Q ss_pred chHHHHHHHcCccccCCCCCccccCCCCCccccCCCCcEEEeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCccCCcc
Q 013449 360 KTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 439 (443)
Q Consensus 360 ~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I~dp~ 439 (443)
++++|.+|||.+ .+||||+|+|++ +.+++|++|+||+||||+|||| +.+++|||||++||||||+|+|+|||
T Consensus 753 --l~~~l~~aGa~v-~~pgCg~CiGn~----~~~~~ge~~isTsNRNF~GR~G-~~~~~yLaSP~~vAAsAiaG~i~~p~ 824 (865)
T 1l5j_A 753 --YYSVFGKSGARI-EIPGCSLCMGNQ----ARVADGATVVSTSTRNFPNRLG-TGANVFLASAELAAVAALIGKLPTPE 824 (865)
T ss_dssp --HHHHHHHHTCEE-CCSSCGGGTCSS----SCCCTTCEEEESSSCCCTTSSS-TTCEEEECCHHHHHHHHHHSBCCCHH
T ss_pred --cHHHHHHcCCEE-cCCccccccCcC----CcCCCCCEEEecCCcCCCCCCC-CCcceEECCHHHHHHHHhCCcCCCHH
Confidence 799999999999 699999999985 3689999999999999999999 67999999999999999999999999
Q ss_pred ccc
Q 013449 440 EFL 442 (443)
Q Consensus 440 ~~~ 442 (443)
++.
T Consensus 825 e~~ 827 (865)
T 1l5j_A 825 EYQ 827 (865)
T ss_dssp HHH
T ss_pred HHH
Confidence 873
No 4
>1usm_A DCOH, hepatocyte nuclear factor 1-alpha; transcriptional stimulator, dimerization cofactor, dehydratase, 4A-carbinolamine dehydratase; 1.2A {Thermus thermophilus} SCOP: d.74.1.1 PDB: 1uso_A
Probab=27.39 E-value=97 Score=23.98 Aligned_cols=39 Identities=8% Similarity=-0.227 Sum_probs=32.9
Q ss_pred HHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHH
Q 013449 153 DAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQ 191 (443)
Q Consensus 153 d~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~ 191 (443)
+++-.+---|-|......|.|+|+-.=..|+|.+|+.|+
T Consensus 33 ~~Ae~~~HHPdi~~~y~~V~v~l~THd~gGlt~~D~~lA 71 (80)
T 1usm_A 33 ALAERENHHPRLTVEWGRVTVEWWTHSAGGVTEKDREMA 71 (80)
T ss_dssp HHHHHHTCCCEEEEETTEEEEEECBTTTTBCCHHHHHHH
T ss_pred HHHHHhCCCCcEEEeCCEEEEEEEeCCCCCCCHHHHHHH
Confidence 455566667889999999999998877889999999986
No 5
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=24.69 E-value=93 Score=25.02 Aligned_cols=40 Identities=8% Similarity=-0.043 Sum_probs=34.5
Q ss_pred hHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHH
Q 013449 152 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQ 191 (443)
Q Consensus 152 td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~ 191 (443)
.+++-.+---|-|..+...|.|+|+=.=..|+|.+|+.|+
T Consensus 50 a~~Ae~~~HHPdi~~~y~~V~v~l~THd~gGlT~~D~~lA 89 (97)
T 3jst_A 50 ALYAEKLDHHPEWFNAYNRVDVTLATHSENGVTELDIKMA 89 (97)
T ss_dssp HHHHHHHTCCCEEEEETTEEEEEECBGGGTBCCHHHHHHH
T ss_pred HHHHHHhCCCCeEEEeCCEEEEEEEeCCCCCCCHHHHHHH
Confidence 3566677777999999999999998888889999999986
No 6
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}
Probab=21.55 E-value=1.3e+02 Score=24.46 Aligned_cols=40 Identities=10% Similarity=-0.121 Sum_probs=33.8
Q ss_pred hHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHH
Q 013449 152 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQ 191 (443)
Q Consensus 152 td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~ 191 (443)
.+++-.+---|-|......|.|+|+-.=..|+|.+|+.|+
T Consensus 46 a~~Ae~~~HHPdi~~~y~~V~v~l~THd~gGlt~~D~~lA 85 (101)
T 2ebb_A 46 AAISENANHHPFISIDYKLITVKLSSWRAKGLTKLDFDLA 85 (101)
T ss_dssp HHHHHHTTCCCEEEEETTEEEEEECBTTTTBCCHHHHHHH
T ss_pred HHHHHHhCCCCcEEEeCCEEEEEEEeCCCCCCCHHHHHHH
Confidence 3555666667899999999999998877889999999987
No 7
>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A
Probab=20.56 E-value=1.4e+02 Score=24.25 Aligned_cols=40 Identities=15% Similarity=0.033 Sum_probs=34.8
Q ss_pred hHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHH
Q 013449 152 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQ 191 (443)
Q Consensus 152 td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~ 191 (443)
.+++-.+---|-|..+...|.|+|+=.=..|+|.+|++|+
T Consensus 54 a~~AE~~~HHPdi~~~y~~V~v~l~THd~gGlT~~D~~lA 93 (104)
T 3hxa_A 54 ALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLA 93 (104)
T ss_dssp HHHHHHHTCCCEEEEETTEEEEEECBTTTTBCCHHHHHHH
T ss_pred HHHHHHhCCCCeEEEeCCEEEEEEEeCCCCCCCHHHHHHH
Confidence 3566677777999999999999999888899999999987
No 8
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Probab=20.53 E-value=1.2e+02 Score=24.62 Aligned_cols=40 Identities=18% Similarity=0.004 Sum_probs=34.0
Q ss_pred hHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHH
Q 013449 152 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQ 191 (443)
Q Consensus 152 td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~ 191 (443)
.+++-.+---|-|......|.|+|+-.=..|+|.+|+.|+
T Consensus 53 a~~Ae~~~HHPdi~~~y~~V~v~l~THd~gGlT~~D~~lA 92 (104)
T 2v6u_A 53 ALYADKVDHHPNWYNVYNTVDVELSTHDAAGLTEKDFALA 92 (104)
T ss_dssp HHHHHHHTCCCEEEEETTEEEEEECBGGGTBCCHHHHHHH
T ss_pred HHHHHHhCCCCcEEEeCCEEEEEEEeCCCCCCCHHHHHHH
Confidence 3566667778999999999999998777789999999987
No 9
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=19.99 E-value=81 Score=19.60 Aligned_cols=16 Identities=6% Similarity=0.258 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHcCc.
Q 013449 76 NRNVDILRDFCMEQNI. 91 (443)
Q Consensus 76 ~~~~~~~r~f~~~~gi. 91 (443)
.--++..++|+|++|+
T Consensus 10 ~M~~~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 10 VMTLSQVKGFVRKNGVx 26 (26)
T ss_pred HHhHHHHHHHHHHcCC.
Confidence 3345778999999885
No 10
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1
Probab=19.06 E-value=1.5e+02 Score=24.21 Aligned_cols=39 Identities=13% Similarity=0.033 Sum_probs=33.7
Q ss_pred HHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHH
Q 013449 153 DAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQ 191 (443)
Q Consensus 153 d~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~ 191 (443)
+++-.+---|-|..+...|.|+|+=.=..|+|.+|++|+
T Consensus 57 ~~Ae~~~HHPdi~~~y~~V~v~l~THd~gGlt~~D~~lA 95 (105)
T 1ru0_A 57 LQAEKMNHHPEWFNVYNKVQITLTSHDCGGLTKRDVKLA 95 (105)
T ss_dssp HHHHHHTCCCEEEEETTEEEEEECBTTTTBCBHHHHHHH
T ss_pred HHHHHhCCCCcEEEeCCEEEEEEEeCCCCCCCHHHHHHH
Confidence 566667777999999999999998777789999999987
Done!