RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013449
(443 letters)
>gnl|CDD|153133 cd01583, IPMI, 3-isopropylmalate dehydratase catalyzes the
isomerization between 2-isopropylmalate and
3-isopropylmalate. Aconatase-like catalytic domain of
3-isopropylmalate dehydratase and related
uncharacterized proteins. 3-isopropylmalate dehydratase
catalyzes the isomerization between 2-isopropylmalate
and 3-isopropylmalate, via the formation of
2-isopropylmaleate 3-isopropylmalate. IPMI is involved
in fungal and bacterial leucine biosynthesis and is also
found in eukaryotes.
Length = 382
Score = 561 bits (1447), Expect = 0.0
Identities = 186/407 (45%), Positives = 244/407 (59%), Gaps = 25/407 (6%)
Query: 29 ILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCME 88
+ + HDV P +F ++ E KVWD EKIV + DH + T D +A V LR F E
Sbjct: 1 LHLVHDVTSPQAFEGLREAGRE--KVWDPEKIVAVFDHNVPTPDIKAAEQVKTLRKFAKE 58
Query: 89 QNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATG 148
I F+D+ +G+CH+ L ++G PG ++G DSHTCT GAFG FATG
Sbjct: 59 FGIN-FFDV----------GRQGICHVILPEKGLTLPGMTIVGGDSHTCTHGAFGAFATG 107
Query: 149 IGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEF 208
IG TD VL TGK+ +VP T+R ++G++P + AKD+IL IIG+I V GATYK+MEF
Sbjct: 108 IGTTDVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEF 167
Query: 209 VGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFL 268
G +E LSMEERMTLCNM +EAG K G+V D TTF+YL+ + ++ + SDE A +
Sbjct: 168 AGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEYLKGRGKAYWKELKSDEDAEYD 227
Query: 269 SEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLAS 328
D S+LEP VA PHSPDN E + +KID+V+IGSCT G+ ED AAA++
Sbjct: 228 KVVEIDASELEPQVAWPHSPDNVVPVSEVEGIKIDQVFIGSCTNGRLEDLRAAAEILKGR 287
Query: 329 GKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKD 388
V +VPA+Q+V+ + +IF EAG + P CGACLGG
Sbjct: 288 KVADGVRLIVVPASQRVYKQAEK--------EGLIEIFIEAGAEVRP-PGCGACLGGHMG 338
Query: 389 TYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYV 435
+ CVST+NRNF GRMG +IYLASP TAAASA+TG +
Sbjct: 339 ---VLAPGERCVSTSNRNFKGRMGSPGARIYLASPATAAASAITGEI 382
>gnl|CDD|234748 PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit;
Reviewed.
Length = 418
Score = 530 bits (1367), Expect = 0.0
Identities = 203/444 (45%), Positives = 277/444 (62%), Gaps = 30/444 (6%)
Query: 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 60
MTL EKI +R S + SPGD V VD++M HD+ GP + F+K G+ KV+D KI
Sbjct: 3 MTLAEKILARHSGRDV-SPGDIVEAKVDLVMAHDITGPLAIKEFEKIGGD--KVFDPSKI 59
Query: 61 VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 120
VI+ DH++ D ++ ILR+F EQ I F+D+ + G+CH L ++
Sbjct: 60 VIVFDHFVPAKDIKSAEQQKILREFAKEQGIPNFFDVGE-----------GICHQVLPEK 108
Query: 121 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 180
G RPG+V++G DSHTCT GA G FATG+G+TD + TGK KVP T++ VL+G++P
Sbjct: 109 GLVRPGDVVVGADSHTCTYGALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLP 168
Query: 181 DYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 240
+ AKD+IL IIG+I V GATYK++EF G T+E LSM+ERMTL NM +EAG K G+
Sbjct: 169 PGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMDERMTLANMAIEAGAKAGIFAP 228
Query: 241 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDV 300
D T +YL+++ Y+P SDE A + Y D+SKLEP VA PH PDN E +
Sbjct: 229 DEKTLEYLKERAGRDYKPWKSDEDAEYEEVYEIDLSKLEPQVAAPHLPDNVKPVSEVEGT 288
Query: 301 KIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSG 358
K+D+V+IGSCT G+ ED AA++ G+KV V ++PA+QK+++ +
Sbjct: 289 KVDQVFIGSCTNGRLEDLRIAAEIL--KGRKVAPGVRLIVIPASQKIYLQALKEGL---- 342
Query: 359 GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQI 418
+IF +AG ++P+CG CLGG + VC+STTNRNF GRMG E ++
Sbjct: 343 ----IEIFVDAGA-VVSTPTCGPCLGG---HMGVLAPGEVCLSTTNRNFKGRMGSPESEV 394
Query: 419 YLASPYTAAASALTGYVTDPREFL 442
YLASP AAASA+TG +TDPRE L
Sbjct: 395 YLASPAVAAASAVTGKITDPREVL 418
>gnl|CDD|223143 COG0065, LeuC, 3-isopropylmalate dehydratase large subunit [Amino
acid transport and metabolism].
Length = 423
Score = 473 bits (1221), Expect = e-166
Identities = 177/448 (39%), Positives = 242/448 (54%), Gaps = 33/448 (7%)
Query: 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 60
TL EKI K ++ G+ V + +D+ + HDV P +F ++ KV D EK
Sbjct: 3 KTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGLREA---GRKVRDPEKT 59
Query: 61 VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 120
V DH + T D +A LR+ E I FYD+ D +G+ H ++
Sbjct: 60 VATFDHNVPTPDIKAAEQQKELRENAKEFGIVNFYDVGD----------QGIVHQVGPEQ 109
Query: 121 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 180
G PG ++G DSHTCT GAFG FA GIG TD VL TGK+ +VP T++ ++G++P
Sbjct: 110 GLTLPGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLP 169
Query: 181 DYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 240
+ AKD+IL +IG+I V G T ++EF G + LSME RMTLCNM +EAG K G++
Sbjct: 170 PGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGIIAP 229
Query: 241 DGTTFKYLE--DKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC- 297
D TTF+YL+ D ++ + SDE A + D S LEP VA P +PDN E
Sbjct: 230 DETTFEYLKEWDGAVAYWKTLKSDEDAVYDKVVELDASDLEPQVAWPTNPDNVVPVSEVE 289
Query: 298 -KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPV 354
+KID+V+IGSCT G+ ED AAA++ G+KV V +VP +++V +
Sbjct: 290 PDPIKIDQVFIGSCTNGRIEDLRAAAEI--LKGRKVAPGVRAIVVPGSRRVKEQAEKEGL 347
Query: 355 PGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHK 414
+IF EAG + P CG CLG + C ST+NRNF GR G
Sbjct: 348 --------DKIFIEAGFEW-REPGCGPCLGMHPG---VLGPGERCASTSNRNFEGRQGSP 395
Query: 415 EGQIYLASPYTAAASALTGYVTDPREFL 442
+ YLASP AAA+A+ G + DPRE L
Sbjct: 396 GARTYLASPAMAAAAAVEGEIVDPRELL 423
>gnl|CDD|130410 TIGR01343, hacA_fam, homoaconitate hydratase family protein. This
model represents a subfamily of proteins consisting of
aconitase, homoaconitase, 3-isopropylmalate dehydratase,
and uncharacterized proteins. The majority of the
members of this family have been designated as
3-isopropylmalate dehydratase large subunit (LeuC) in
microbial genome annotation, but the only characterized
member is Thermus thermophilus homoaconitase, an enzyme
of a non-aspartate pathway of Lys biosynthesis.
Length = 412
Score = 428 bits (1103), Expect = e-148
Identities = 176/440 (40%), Positives = 263/440 (59%), Gaps = 30/440 (6%)
Query: 2 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIV 61
T+ EKI S+ S K ++ GD + +D M HD+ P + ++ + KV+D E+IV
Sbjct: 1 TIAEKILSKHSGK-EVYAGDLIVAEIDQAMVHDITAPLAIRRLEEYGID--KVFDPERIV 57
Query: 62 IIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEG 121
I+ DH + S +A + R+F + IK+F+D+ +G+CH L +EG
Sbjct: 58 IVVDHVVPASTIKAAEMQKLAREFVKKTGIKHFFDVG-----------EGICHQVLPEEG 106
Query: 122 HCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPD 181
+PG++++G DSHTCT GA G FATG+G+TD + + TGK +VP +++ L G++
Sbjct: 107 LVKPGDLVVGADSHTCTYGALGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNP 166
Query: 182 YLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPAD 241
+ AKD+IL++IG+I V GATY +MEF G T++ ++MEERMTL NM +EAGGK G++ D
Sbjct: 167 GVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEERMTLANMAIEAGGKTGIIEPD 226
Query: 242 GTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVK 301
T YL+++ P+ SDE A + E D S+LEP+VA PH+ DN E + ++
Sbjct: 227 EKTRAYLKERYKEPFRVYKSDEDAEYAKEVEIDASQLEPVVAAPHNVDNVHPVSEVEGIE 286
Query: 302 IDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGG 359
+D+V+IGSCT G+ ED AAK+ G+KV V ++PA++ V++
Sbjct: 287 VDQVFIGSCTNGRIEDLRVAAKIL--KGRKVAPDVRLIVIPASRAVYLQALK-------- 336
Query: 360 KTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIY 419
+ +IF +AG ++P CG CLG + VC+ST+NRNF GRMG +IY
Sbjct: 337 EGLIEIFVKAGA-VVSTPGCGPCLGR---HQGVLAPGEVCISTSNRNFKGRMGDPNAEIY 392
Query: 420 LASPYTAAASALTGYVTDPR 439
LASP TAAASA+ G + DPR
Sbjct: 393 LASPATAAASAVKGRIADPR 412
>gnl|CDD|233715 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratase, large subunit.
This subfamily is a subset of the larger HacA family
(Homoaconitate hydratase family, TIGR01343) and is most
closely related to the 3-isopropylmalate dehydratase,
large subunits which form TIGR00170. This subfamily
includes the members of TIGR01343 which are gene
clustered with other genes of leucine biosynthesis. The
rest of the subfamily includes mainly archaeal species
which exhibit two hits to this model. In these cases it
is possible that one or the other of the hits does not
have a 3-isopropylmalate dehydratase activity but rather
one of the other related aconitase-like activities.
Length = 412
Score = 401 bits (1033), Expect = e-138
Identities = 180/440 (40%), Positives = 243/440 (55%), Gaps = 28/440 (6%)
Query: 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 60
MTL EKI S +P + G+ V V VD+ M HD GP + ++ A+V D EKI
Sbjct: 1 MTLAEKILSEKVGRP-VEAGEIVEVEVDLAMAHDGTGPLAIETLREL---GARVEDPEKI 56
Query: 61 VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 120
VI DH + A +R+F E I F +G+CH L +E
Sbjct: 57 VIFFDHVVPPPTVEAANRQKEIREFAKEHGIP---------VFDVG---EGICHQVLVEE 104
Query: 121 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 180
G+ PG V++G DSHTCT+GA G FATG+G TD L TGK LKVP +++ V++G+
Sbjct: 105 GYAGPGMVVVGGDSHTCTSGAVGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPE 164
Query: 181 DYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 240
+ + AKD+ L I+GE+ GATY ++EF G +E +SM+ERMTLCNM VEAG K G+V
Sbjct: 165 EGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDERMTLCNMAVEAGAKAGIVVP 224
Query: 241 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDV 300
D T++YL+ + + + D A + E D+S LEPLVA PHS DN + +
Sbjct: 225 DEETYEYLKKRRGYEFRILRPDPGAKYDDEIEIDLSDLEPLVAVPHSVDNVRPVSDVEGT 284
Query: 301 KIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGK 360
+ID+V+IGSCT G+ ED AA++ V +VPA++KV+ +
Sbjct: 285 EIDQVFIGSCTNGRIEDLRIAAEILEGRRVHPDVRLIVVPASRKVYERALEEGI------ 338
Query: 361 TCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYL 420
AG P CG CLG + VCVSTTNRNF GRMG + +IYL
Sbjct: 339 --ILTLIRAGA-IICPPGCGPCLGRHMGVLG---DGEVCVSTTNRNFRGRMGSPDAEIYL 392
Query: 421 ASPYTAAASALTGYVTDPRE 440
ASP TAAASA+ GY+TDP+
Sbjct: 393 ASPATAAASAVEGYITDPQR 412
>gnl|CDD|131138 TIGR02083, LEU2, 3-isopropylmalate dehydratase, large subunit.
Homoaconitase, aconitase, and 3-isopropylmalate
dehydratase have similar overall structures. All are
dehydratases (EC 4.2.1.-) and bind a Fe-4S iron-sulfur
cluster. 3-isopropylmalate dehydratase is split into
large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble the leuC and
leuD pair in length and sequence but even more closely
resemble the respective domains of homoaconitase, and
their identity is uncertain. These homologs are
described by a separate model of subfamily (rather than
equivalog) homology type (TIGR01343). This model along
with TIGR00170 describe clades which consist only of
LeuC sequences. Here, the genes from Pyrococcus
furiosus, Clostridium acetobutylicum, Thermotoga
maritima and others are gene clustered with related
genes from the leucine biosynthesis pathway [Amino acid
biosynthesis, Pyruvate family].
Length = 419
Score = 362 bits (931), Expect = e-122
Identities = 174/444 (39%), Positives = 262/444 (59%), Gaps = 30/444 (6%)
Query: 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 60
MT+ EKI ++ + + PG+ + +DI++ +D+ P + FK+ G+ KV+D +++
Sbjct: 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAFKEYGGK--KVFDPDRV 58
Query: 61 VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 120
++PDH+ D ++ ++R+F EQ I+ F++I GN G+ H L +E
Sbjct: 59 ALVPDHFTPNKDIKSAEQCKMMREFAREQGIEKFFEI---GNM-------GIEHALLPEE 108
Query: 121 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 180
G +PG++++G DSHTCT GA G FATG+G+TD + TGK +VP ++FVL G++
Sbjct: 109 GIVKPGDLIIGADSHTCTYGALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLK 168
Query: 181 DYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 240
++ KDLIL IIG I V GA YKSMEF G ++ LSM++R T+ NM +EAG K G+ P
Sbjct: 169 PWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMDDRFTIANMAIEAGAKTGIFPV 228
Query: 241 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC--K 298
D T +Y + + + +DE A ++ D+S+LEP VA PH P+N E +
Sbjct: 229 DEITIEYEKGRGKREEKIYKADEDAKYVRVIEIDLSELEPQVAFPHLPENTKDISEAGKE 288
Query: 299 DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPG 356
++KID+V IGSCT G+ ED AA++ GK V V ++P +Q V+++
Sbjct: 289 EIKIDQVVIGSCTNGRLEDLRLAAEIL--KGKTVAPDVRCIIIPGSQNVYLEAMK----- 341
Query: 357 SGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEG 416
+ +IF EAG ++P+CG CLGG A E +STTNRNF GRMGH +
Sbjct: 342 ---EGLLEIFIEAGA-VVSTPTCGPCLGGHMGILA---EGERAISTTNRNFVGRMGHPKS 394
Query: 417 QIYLASPYTAAASALTGYVTDPRE 440
++YLASP AAASA+ GY+ P E
Sbjct: 395 EVYLASPAVAAASAIKGYIASPEE 418
>gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit;
Provisional.
Length = 471
Score = 288 bits (740), Expect = 4e-93
Identities = 156/490 (31%), Positives = 216/490 (44%), Gaps = 105/490 (21%)
Query: 19 PGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDER---- 74
+V + +D + ++ P +F V + + + DH + T R
Sbjct: 20 DDGHVLLYIDRHLLNEYTSPQAF---SGLRARGRTVRRPDLTLAVVDHVVPTRPGRDRGI 76
Query: 75 ----ANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLL 130
VD LR+ C + I+ F D+ D P +G+ H+ + G PG V++
Sbjct: 77 TDPGGALQVDYLRENCADFGIRLF-DVDD-------PR-QGIVHVVAPELGLTLPGMVIV 127
Query: 131 GTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLIL 190
DSHT T GA G A GIG ++ VL T ++ + P T+R +DGE+P + AKDLIL
Sbjct: 128 CGDSHTTTYGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLIL 187
Query: 191 QIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLED 250
+I I GAT ++EF G + LSME RMTLCNM VEAG + G++ D TTF YL
Sbjct: 188 ALIARIGADGATGYAIEFAGEAIRALSMEGRMTLCNMAVEAGARGGLIAPDETTFDYLRG 247
Query: 251 KTSLPYEP--------------VYSDEKASFLSEYRFDISKLEPLVAKPHSPD------- 289
+ P P + SD A F E D + + P V SPD
Sbjct: 248 R---PRAPKGALWDAALAYWRTLRSDADAVFDREVEIDAADIAPQVTWGTSPDQAVPITG 304
Query: 290 -----------------NRALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVF 325
RAL + IDRV+IGSCT G+ ED AAA V
Sbjct: 305 RVPDPAAEADPARRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAAAAV- 363
Query: 326 LASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPS 378
G+KV V + VPGSG + ++IF AG + P
Sbjct: 364 -LRGRKVAPG-------------VRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWRE-PG 408
Query: 379 CGACLGGPKDTYARMNEPMV-----CVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTG 433
C CL MN+ ++ C STTNRNF GR G + +L SP AA+A+ G
Sbjct: 409 CSMCLA--------MNDDVLAPGERCASTTNRNFEGRQG-PGARTHLMSPAMVAAAAVAG 459
Query: 434 YVTDPREFLE 443
++TD R L+
Sbjct: 460 HITDVRSLLQ 469
>gnl|CDD|235490 PRK05478, PRK05478, isopropylmalate isomerase large subunit;
Validated.
Length = 466
Score = 260 bits (668), Expect = 2e-82
Identities = 155/456 (33%), Positives = 207/456 (45%), Gaps = 105/456 (23%)
Query: 53 KVWDREKIVIIPDHYIFT-------SDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKA 105
KV + DH + T +D + V+ L C E I +D+ D
Sbjct: 50 KVRRPDLTFATMDHNVPTTDRDLPIADPVSRIQVETLEKNCKEFGIT-LFDLGD------ 102
Query: 106 NPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLL 165
+G+ H+ ++G PG ++ DSHT T GAFG A GIG ++ VL T +L
Sbjct: 103 --PRQGIVHVVGPEQGLTLPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLLQ 160
Query: 166 KVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLC 225
K P T++ +DG++P + AKD+IL IIG+I AG T +EF G + LSME RMT+C
Sbjct: 161 KKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSMEGRMTIC 220
Query: 226 NMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEP--------------VYSDEKASFLSEY 271
NM +EAG + G+V D TTF+YL+ + P+ P + SDE A F
Sbjct: 221 NMSIEAGARAGLVAPDETTFEYLKGR---PFAPKGEDWDKAVAYWKTLKSDEDAVFDKVV 277
Query: 272 RFDISKLEPLV-------------------AKPHSPDNRALAREC------------KDV 300
D + +EP V P RA A D+
Sbjct: 278 TLDAADIEPQVTWGTNPGQVISIDGKVPDPEDFADPVKRASAERALAYMGLKPGTPITDI 337
Query: 301 KIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-- 358
KID+V+IGSCT + ED AAA V G+KV V V VPGSG
Sbjct: 338 KIDKVFIGSCTNSRIEDLRAAAAV--VKGRKVA---------PGVRALV----VPGSGLV 382
Query: 359 -------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMV-----CVSTTNRN 406
G +IF EAG + P C CL MN + C ST+NRN
Sbjct: 383 KAQAEAEG--LDKIFIEAGFEW-REPGCSMCLA--------MNPDKLPPGERCASTSNRN 431
Query: 407 FPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 442
F GR G K G+ +L SP AAA+A+TG+ D RE L
Sbjct: 432 FEGRQG-KGGRTHLVSPAMAAAAAITGHFVDVRELL 466
>gnl|CDD|153129 cd01351, Aconitase, Aconitase catalytic domain; Aconitase catalyzes
the reversible isomerization of citrate and isocitrate
as part of the TCA cycle. Aconitase catalytic domain.
Aconitase (aconitate hydratase) catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Cis-aconitate is formed as an intermediate
product during the course of the reaction. In eukaryotes
two isozymes of aconitase are known to exist: one found
in the mitochondrial matrix and the other found in the
cytoplasm. Aconitase, in its active form, contains a
4Fe-4S iron-sulfur cluster; three cysteine residues
have been shown to be ligands of the 4Fe-4S cluster.
This is the Aconitase core domain, including structural
domains 1, 2 and 3, which binds the Fe-S cluster. The
aconitase family also contains the following proteins: -
Iron-responsive element binding protein (IRE-BP), a
cytosolic protein that binds to iron-responsive elements
(IREs). IREs are stem-loop structures found in the
5'UTR of ferritin, and delta aminolevulinic acid
synthase mRNAs, and in the 3'UTR of transferrin
receptor mRNA. IRE-BP also express aconitase activity. -
3-isopropylmalate dehydratase (isopropylmalate
isomerase), the enzyme that catalyzes the second step in
the biosynthesis of leucine. - Homoaconitase
(homoaconitate hydratase), an enzyme that participates
in the alpha-aminoadipate pathway of lysine
biosynthesis and that converts cis-homoaconitate into
homoisocitric acid.
Length = 389
Score = 242 bits (620), Expect = 3e-76
Identities = 131/412 (31%), Positives = 194/412 (47%), Gaps = 34/412 (8%)
Query: 30 LMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQ 89
+M D GP + F+ KV D +I + DH + N L F Q
Sbjct: 2 VMLQDATGPMAMKAFE-ILAALGKVADPSQIACVHDHAVQLEKPVNNEGHKFLSFFAALQ 60
Query: 90 NIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGI 149
I FY G+ H + E PG++L+G+DSHT + G G +TG
Sbjct: 61 GI-AFYRPGV-----------GIIH-QIMVENLALPGDLLVGSDSHTTSYGGLGAISTGA 107
Query: 150 GNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFV 209
G D FV+ G LK P + L G++ + KD++L++ G + V G + +EF
Sbjct: 108 GGGDVAFVMAGGPAWLKKPEVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFY 167
Query: 210 GTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLED--------KTSLPYEPVYS 261
G V LS+E+R+T+CNM+ E G G+ P D TT K+LE E + +
Sbjct: 168 GEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWLEATGRPLLKNLWLAFPEELLA 227
Query: 262 DEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAA 321
DE A + D+S+LEP ++ P+ PD+ E + KID+V IGSCT + D LAA
Sbjct: 228 DEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEGTKIDQVLIGSCTNNRYSDMLAA 287
Query: 322 AKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGA 381
AK+ + V + P ++ V+ + +I ++G P CG
Sbjct: 288 AKLLKGAKVAPGVRLIVTPGSRMVYATLSREGY--------YEILVDSGARILP-PGCGP 338
Query: 382 CLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTG 433
C+G + + V VS+ NRNFPGR+G E +YLASP AAA+A+ G
Sbjct: 339 CMGN---GARLVADGEVGVSSGNRNFPGRLGTYERHVYLASPELAAATAIAG 387
>gnl|CDD|235974 PRK07229, PRK07229, aconitate hydratase; Validated.
Length = 646
Score = 238 bits (609), Expect = 7e-72
Identities = 128/353 (36%), Positives = 175/353 (49%), Gaps = 57/353 (16%)
Query: 111 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPT 170
G+CH + E PG+ LLG+DSHT TAG G A G G D + G LK+P
Sbjct: 98 GICH-QVHLERFAFPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGGPYYLKMPKV 156
Query: 171 LRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 230
+ L G++P ++ AKD+IL+++ ++V G K +E+ G V LS+ ER T+ NM E
Sbjct: 157 VGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSVPERATITNMGAE 216
Query: 231 AGGKNGVVPADGTTFKYL------EDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAK 284
G + P+D T ++L +D + + +D A + D+S+LEPL+A
Sbjct: 217 LGATTSIFPSDERTREFLKAQGREDD-----WVELLADPDAEYDEVIEIDLSELEPLIAG 271
Query: 285 PHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQK 344
PHSPDN E +K+D+V IGSCT ED + AA + GKKV K
Sbjct: 272 PHSPDNVVPVSEVAGIKVDQVLIGSCTNSSYEDLMRAASI--LKGKKVHP---------K 320
Query: 345 VWMDVYTLPVPGSGGKTCSQI------------FEEAGCDTPASPSCGACLGGPKDTYAR 392
V + + PGS Q+ AG +CG C+G
Sbjct: 321 VSLVI----NPGS-----RQVLEMLARDGALADLIAAGA-RILENACGPCIG-------- 362
Query: 393 M----NEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 441
M V + T NRNFPGR G K+ Q+YLASP TAAASALTG +TDPR
Sbjct: 363 MGQAPATGNVSLRTFNRNFPGRSGTKDAQVYLASPETAAASALTGVITDPRTL 415
>gnl|CDD|232854 TIGR00170, leuC, 3-isopropylmalate dehydratase, large subunit.
Members of this family are 3-isopropylmalate
dehydratase, large subunit, or the large subunit domain
of single-chain forms. Homoaconitase, aconitase, and
3-isopropylmalate dehydratase have similar overall
structures. All are dehydratases (EC 4.2.1.-) and bind a
Fe-4S iron-sulfur cluster. 3-isopropylmalate dehydratase
is split into large (leuC) and small (leuD) chains in
eubacteria. Several pairs of archaeal proteins resemble
the leuC and leuD pair in length and sequence but even
more closely resemble the respective domains of
homoaconitase, and their identity is uncertain. These
homologs are now described by a separate model of
subfamily (rather than equivalog) homology type, and the
priors and cutoffs for this model have been changed to
focus this equivalog family more narrowly [Amino acid
biosynthesis, Pyruvate family].
Length = 465
Score = 219 bits (560), Expect = 2e-66
Identities = 159/501 (31%), Positives = 230/501 (45%), Gaps = 100/501 (19%)
Query: 2 TLTEKIFS-----RASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWD 56
TL EK+F A + L + +D + H+V P +F ++ KV
Sbjct: 4 TLYEKLFDAHIVYEAEGETPL-------LYIDRHLIHEVTSPQAFEGLRQA---GRKVRR 53
Query: 57 REKIVIIPDHYIFTS-------DERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDY 109
+K DH I T DE A V L C E ++ F D+ +
Sbjct: 54 PQKTFATMDHNIPTQNRDFNIKDEVAKIQVTELEKNCKEFGVRLF-DLHSV--------D 104
Query: 110 KGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPP 169
+G+ H+ ++G PG ++ DSHT T GAFG A GIG ++ VL T +
Sbjct: 105 QGIVHVMGPEQGLTLPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLKQARAK 164
Query: 170 TLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVV 229
T++ +DG++ + AKD+IL IIG+ VAG T +EF G + LSME RMT+CNM +
Sbjct: 165 TMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEGRMTVCNMAI 224
Query: 230 EAGGKNGVVPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKL 278
EAG + G++ D TTF+Y + + P ++ + +DE A F + + + +
Sbjct: 225 EAGARAGLIAPDETTFEYCKGRPHAPKGKEFDKAVAYWKTLKTDEGAVFDTVITLEANDI 284
Query: 279 EPLVA----------------KPHS---PDNRALAREC------------KDVKIDRVYI 307
P V P S P ++A A KD+K+D+V+I
Sbjct: 285 SPQVTWGTNPGQVLPVNSEVPDPESFADPVDKASAERALAYMGLEPGTPLKDIKVDKVFI 344
Query: 308 GSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GK 360
GSCT + ED AAA V G+KV +V L VPGSG +
Sbjct: 345 GSCTNSRIEDLRAAAAV--IKGRKVA-------------DNVKALVVPGSGLVKLQAEKE 389
Query: 361 TCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYL 420
+IF EAG + P C CLG D R+ E C ST+NRNF GR G + G+ +L
Sbjct: 390 GLDKIFIEAGFEW-REPGCSMCLGMNND---RLPEGERCASTSNRNFEGRQG-RGGRTHL 444
Query: 421 ASPYTAAASALTGYVTDPREF 441
SP AAA+A+ G+ D R+F
Sbjct: 445 VSPAMAAAAAIHGHFVDIRKF 465
>gnl|CDD|215861 pfam00330, Aconitase, Aconitase family (aconitate hydratase).
Length = 464
Score = 215 bits (550), Expect = 4e-65
Identities = 144/480 (30%), Positives = 215/480 (44%), Gaps = 64/480 (13%)
Query: 2 TLTEKIF-SRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 60
TL EKI + + +++ D ++ DV P +F + G + I
Sbjct: 1 TLYEKILDAHVDDPANERGTPYLYIRPDRVLMQDVTSPQAFLGLR-AAGRPVRRVPGTTI 59
Query: 61 VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 120
DH I + + ++++I + EQ ++K G P G+ H +
Sbjct: 60 TC--DHNI-PTQDGGEKDLNIAIERNKEQYDFLEKNVKAFGVGFWGPGSTGIVHQIGLEN 116
Query: 121 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 180
G PG L+GTDSHT T G G A G+G ++A VL K P + L G++
Sbjct: 117 GFTLPGLTLVGTDSHTPTHGGLGALAFGVGGSEAEHVLAGQPWEQKKPKVMGIKLTGKLN 176
Query: 181 DYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 240
+ AKD+IL++IG+++V G T K +EF G ++ LSME RMT+CNM +E G G+ P
Sbjct: 177 GGITAKDVILKVIGKLTVKGGTGKIVEFFGEGIDDLSMEGRMTICNMAIEIGATTGLFPP 236
Query: 241 DGTTFKYLE-----------DKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPD 289
D TTFKYL+ D+ ++ + SD+ A + D+S +EP V P +P
Sbjct: 237 DETTFKYLKGTGRAPKAEEADEAVAKWKTLKSDKDAQYDKVIEIDLSDIEPHVTGPTTPQ 296
Query: 290 -----------------------NRALA-------RECKDVKIDRVYIGSCTGGKTEDFL 319
+ALA KD+K+D+ +IGSCT ED
Sbjct: 297 DAVPISEVPPDPNNFLDPVVKSMEKALAYMGLWPGTPLKDIKVDKAFIGSCTNSSYEDLR 356
Query: 320 AAAKVF---LASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPAS 376
AA + G K V +VP +++V T G +IF+EAG + A
Sbjct: 357 RAAAIVKGAAGKGLKPWVKATVVPGSEQV---KATAERDG-----LDKIFDEAGFEWRA- 407
Query: 377 PSCGACLG--GPKDTYARMNEPMV-CVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTG 433
C C+G D + CVS++NRNF GR G +LASP AA+A+ G
Sbjct: 408 NGCSPCIGMNDRPD---IIKGEKNTCVSSSNRNFEGRQGANGRTHWLASPAMVAAAAIAG 464
>gnl|CDD|153135 cd01585, AcnA_Bact, Aconitase catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Bacterial Aconitase-like catalytic domain.
Aconitase (aconitate hydratase or citrate hydrolyase)
catalyzes the reversible isomerization of citrate and
isocitrate as part of the TCA cycle. Cis-aconitate is
formed as an intermediate product during the course of
the reaction. This distinct subfamily is found only in
bacteria and Archaea. Its exact characteristics are not
known.
Length = 380
Score = 212 bits (541), Expect = 1e-64
Identities = 118/342 (34%), Positives = 166/342 (48%), Gaps = 47/342 (13%)
Query: 111 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPT 170
G+CH + E PG+ LLG+DSHT TAG G A G G D + + +P
Sbjct: 69 GICH-QVHLERFAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPMPKV 127
Query: 171 LRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 230
+ L GE+P ++ AKD+IL+++ ++V G K E+ G V LS+ ER T+ NM E
Sbjct: 128 VGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAE 187
Query: 231 AGGKNGVVPADGTTFKYLEDK-TSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPD 289
G + P+D T ++L + + + +D A + E D+S+LEPL+A+PHSPD
Sbjct: 188 LGATTSIFPSDERTREFLAAQGREDDWVELAADADAEYDEEIEIDLSELEPLIARPHSPD 247
Query: 290 NRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDV 349
N RE +K+D+V IGSCT ED + A + G++V +V A
Sbjct: 248 NVVPVREVAGIKVDQVAIGSCTNSSYEDLMTVAAIL--KGRRVHPHVSMVVA-------- 297
Query: 350 YTLPVPGSGGKTCSQIFE------------EAGCDTPASPSCGACLG----GPKDTYARM 393
PGS Q+ E AG +CG C+G P
Sbjct: 298 -----PGS-----KQVLEMLARNGALADLLAAGARI-LESACGPCIGMGQAPPTGG---- 342
Query: 394 NEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYV 435
V V T NRNF GR G K+ +YLASP AAA+ALTG +
Sbjct: 343 ----VSVRTFNRNFEGRSGTKDDLVYLASPEVAAAAALTGVI 380
>gnl|CDD|130409 TIGR01342, acon_putative, aconitate hydratase, putative, Aquifex
type. This model represents a small family of proteins
homologous (and likely functionally equivalent to)
aconitase 1. Members are found, so far in the anaerobe
Clostridium acetobutylicum, in the microaerophilic,
early-branching bacterium Aquifex aeolicus, and in the
halophilic archaeon Halobacterium sp. NRC-1. No member
is experimentally characterized [Energy metabolism, TCA
cycle].
Length = 658
Score = 214 bits (545), Expect = 9e-63
Identities = 149/460 (32%), Positives = 218/460 (47%), Gaps = 64/460 (13%)
Query: 2 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIV 61
TL EKI + L PG+ + + +D ++ D G + F+ + K E
Sbjct: 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEALEMDEVKT---ELAA 57
Query: 62 IIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEG 121
DH + D +N D + F M K+ GN G+CH + +E
Sbjct: 58 QYCDHNMLQFD---FKNADDHK-FLMSAAGKFGAWFSKPGN--------GICH-NVHKEN 104
Query: 122 HCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPD 181
PG+ LLG+DSHT TAG G A G G D + L++P + L+GE+P+
Sbjct: 105 FAAPGKTLLGSDSHTPTAGGLGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPE 164
Query: 182 YLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPAD 241
+ AKD+IL+++ +SV G K E+ G VE LS+ ER T+ NM E G + + P+D
Sbjct: 165 WATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPERATITNMGAELGATSSIFPSD 224
Query: 242 GTTFKYL-----EDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARE 296
T +L ED + + +D A + E D+S LEPL+A+PH PDN RE
Sbjct: 225 DITEAWLAAFDREDD----FVDLLADADAEYADEIEIDLSDLEPLIAEPHMPDNVVPVRE 280
Query: 297 CKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPG 356
+++D+V IGSCT G ED L AAK L G++V T A PG
Sbjct: 281 IAGIEVDQVMIGSCTNGAFEDLLPAAK--LLEGREVHKDTEFAVA-------------PG 325
Query: 357 SGGKTCSQI---------FEEAGCDTPASPSCGACLG----GPKDTYARMNEPMVCVSTT 403
S K ++ F AG + + +CGAC+G D V + +
Sbjct: 326 S--KQALELIAQEGALAEFLAAGANFLEA-ACGACIGIGFAPASDG--------VSLRSF 374
Query: 404 NRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE 443
NRNF GR G ++ ++YLASP TA A+A+ G + DPR+ +
Sbjct: 375 NRNFEGRAGIEDAKVYLASPETATAAAIAGEIIDPRDLAD 414
>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion].
Length = 861
Score = 190 bits (485), Expect = 4e-53
Identities = 106/399 (26%), Positives = 155/399 (38%), Gaps = 69/399 (17%)
Query: 102 NFKANPDYKGVCHIA----LAQEGHCRPG----EVLLGTDSHTCTAGAFGQFATGIGNTD 153
NF+ P G+ H LA+ +PG + L+GTDSHT G G G+G +
Sbjct: 161 NFRVVPPGTGIIHQVNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIE 220
Query: 154 AGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTV 213
A + + +P + L G++P+ + A DL+L + G + G K +EF G V
Sbjct: 221 AEAAMLGQPWYMLIPEVVGVKLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGV 280
Query: 214 ERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLE----DKTSLPYEPVY--------- 260
LS+ +R T+ NM E G +G P D T YL + + Y
Sbjct: 281 ASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGRSEEQVALVEAYAKAQGLWYD 340
Query: 261 -SDEKASFLSEYRFDISKLEPLVAKPHSPDNR------------------------ALAR 295
+D+ A + D+S +EP +A P P +R L +
Sbjct: 341 PADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIKRVYSLLGK 400
Query: 296 ECKDVKIDRVYIGSCTGGKTEDFLAAA----KVFLASGKKVK--VPTFLVPATQKVWMDV 349
E D K+ I SCT D L AA K + G KVK V T + P ++ V +
Sbjct: 401 ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYL 460
Query: 350 YTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPM-------VCVST 402
G E+ G + C C+G + + + V +
Sbjct: 461 ------EKAGLL--PYLEKLGFNIVGY-GCTTCIGNSGPLPEEIEKAINDNDLVVTAVLS 511
Query: 403 TNRNFPGRMGHKEGQIYLASPYTAAASALTGYVT-DPRE 440
NRNF GR+G YLASP A AL G + D
Sbjct: 512 GNRNFEGRIGPLVKANYLASPPLVVAYALAGTINFDLTT 550
>gnl|CDD|129245 TIGR00139, h_aconitase, homoaconitase. Homoaconitase is known only
as a fungal enzyme from two species, where it is part of
an unusual lysine biosynthesis pathway. Because This
model is based on just two sequences from a narrow
taxonomic range, it may not recognize distant orthologs,
should any exist. Homoaconitase, aconitase, and
3-isopropylmalate dehydratase have similar overall
structures, but 3-isopropylmalate dehydratase is split
into large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble leuC and
leuD over their lengths but are even closer to the
respective domains of homoaconitase, and their identity
is uncertain [Amino acid biosynthesis, Aspartate
family].
Length = 712
Score = 180 bits (457), Expect = 5e-50
Identities = 134/480 (27%), Positives = 218/480 (45%), Gaps = 62/480 (12%)
Query: 2 TLTEKIF-SRASEKPQ---LSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENA-KVWD 56
LTEKI A P+ + GD V + M+HD P + K G A K+ +
Sbjct: 3 NLTEKIVQKYAVGLPEGKFVHSGDYVSIKPAHCMSHDNSWPCAL----KFMGIGASKIHN 58
Query: 57 REKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIA 116
++IV+ DH I ++ + + +F + I ++ P +G+ H
Sbjct: 59 PDQIVMTLDHDIQNKSDKNLKKYKNIEEFAKKHGIDFY------------PAGRGIGHQI 106
Query: 117 LAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLD 176
+ +EG PG + + +DSH+ G G T I TDA + TGK ++PP +
Sbjct: 107 MIEEGFAFPGNLAVASDSHSNMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFK 166
Query: 177 GEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGT--TVERLSMEERMTLCNMVVEAGGK 234
G++P + KD+I+ + G + ++EF G+ ++ L ++ R+T+ NM E G
Sbjct: 167 GQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLNALPIDHRLTIANMTTEWGAL 226
Query: 235 NGVVPADGTTFKYLEDKTSL--------PYE------------------PVYSDEKASFL 268
+G+ P D T +L+ K +L P+ P+ +D+ A +
Sbjct: 227 SGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAEIPLKADKDAHYA 286
Query: 269 SEYRFDISKLEPLVAKPHSPD--NRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFL 326
E D++ L V+ P+S N E +D+KID+ Y+ SCT + D AAA VF
Sbjct: 287 KELFIDLASLSHYVSGPNSVKVANPLKDLEAQDIKIDKAYLVSCTNSRASDIAAAADVFC 346
Query: 327 ASGKK--VKVPTFLVPATQKVWMDVYTLPVPGSGGKTCS-QIFEEAGCDTPASPSCGACL 383
+ K K+ + + ++ ++ + + + EAG P CG C+
Sbjct: 347 EAADKNGGKINK--IAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGA-IPLPAGCGPCI 403
Query: 384 GGPKDTYARMNEP-MVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 442
G A + EP V +S +NRNF GRMG K+ + YLASP AASAL G ++ P E L
Sbjct: 404 G----LGAGLLEPGEVGISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKISGPAEVL 459
>gnl|CDD|153132 cd01582, Homoaconitase, Homoaconitase and other uncharacterized
proteins of the Aconitase family. Homoaconitase
catalytic domain. Homoaconitase and other
uncharacterized proteins of the Aconitase family.
Homoaconitase is part of an unusual lysine biosynthesis
pathway found only in filamentous fungi, in which lysine
is synthesized via the alpha-aminoadipate pathway. In
this pathway, homoaconitase catalyzes the conversion of
cis-homoaconitic acid into homoisocitric acid. The
reaction mechanism is believed to be similar to that of
other aconitases.
Length = 363
Score = 168 bits (426), Expect = 5e-48
Identities = 119/408 (29%), Positives = 183/408 (44%), Gaps = 54/408 (13%)
Query: 31 MTHDVCGPGSFGIFKKEFGENA-KVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQ 89
MTHD P + K A K+ + ++IV+ DH + E+ + + F +
Sbjct: 3 MTHDNSWP----VALKFMSIGATKIHNPDQIVMTLDHDVQNKSEKNLKKYKNIESFAKKH 58
Query: 90 NIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGI 149
I ++ P +G+ H + +EG+ PG + + +DSH+ G G T I
Sbjct: 59 GIDFY------------PAGRGIGHQIMIEEGYAFPGTLAVASDSHSNMYGGVGCLGTPI 106
Query: 150 GNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFV 209
TDA + TG+ ++PP + L G++P + KD+I+ + G + ++EF
Sbjct: 107 VRTDAAAIWATGQTWWQIPPVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFT 166
Query: 210 GTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLS 269
G+ + LS++ R+T+ NM E G +G+ P D K L
Sbjct: 167 GSGLNSLSVDTRLTIANMTTEWGALSGLFPTDA---------------------KHLIL- 204
Query: 270 EYRFDISKLEPLVAKPHSPD--NRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLA 327
D+S L P V+ P+S E +++KI++ Y+ SCT + D AAA V
Sbjct: 205 ----DLSTLSPYVSGPNSVKVSTPLKELEAQNIKINKAYLVSCTNSRASDIAAAADVV-- 258
Query: 328 SGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCS-QIFEEAGCDTPASPSCGACLGGP 386
GKK K V + ++ + V + K Q EAG TP CG C+G
Sbjct: 259 KGKKEKNGKIPVAPGVEFYVAAASSEVQAAAEKNGDWQTLLEAGA-TPLPAGCGPCIG-- 315
Query: 387 KDTYARMNEP-MVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTG 433
+ EP V +S TNRNF GRMG E YLASP AASA++G
Sbjct: 316 --LGQGLLEPGEVGISATNRNFKGRMGSTEALAYLASPAVVAASAISG 361
>gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Mitochondrial aconitase A catalytic domain.
Aconitase (also known as aconitate hydratase and citrate
hydro-lyase) catalyzes the reversible isomerization of
citrate and isocitrate as part of the TCA cycle.
Cis-aconitate is formed as an intermediary product
during the course of the reaction. In eukaryotes two
isozymes of aconitase are known to exist: one found in
the mitochondrial matrix and the other found in the
cytoplasm. This is the mitochondrial form. The
mitochondrial product is coded by a nuclear gene. Most
members of this subfamily are mitochondrial but there
are some bacterial members.
Length = 412
Score = 131 bits (331), Expect = 4e-34
Identities = 99/335 (29%), Positives = 150/335 (44%), Gaps = 30/335 (8%)
Query: 120 EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEM 179
E + PG +++GTDSHT AG G A G+G DA V+ LK P + L G++
Sbjct: 85 ENYAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCPKVIGVKLTGKL 144
Query: 180 PDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVP 239
+ KD+IL++ G ++V G T +E+ G V+ LS T+CNM E G V P
Sbjct: 145 SGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFP 204
Query: 240 ADGTTFKYLE---------DKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN 290
+ KYL+ + + +DE A + ++S+LEP + P +PD
Sbjct: 205 YNERMKKYLKATGRAEIADLADEFKDDLLVADEGAEYDQLIEINLSELEPHINGPFTPDL 264
Query: 291 RALARECKDV--------KIDRVYIGSCTGGKTEDFLAAAKVF---LASGKKVKVPTFLV 339
+ K+V + IGSCT ED AA + LA G K K +
Sbjct: 265 ATPVSKFKEVAEKNGWPLDLRVGLIGSCTNSSYEDMGRAASIAKQALAHGLKCKSIFTIT 324
Query: 340 PATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVC 399
P ++++ T+ G Q F +AG A+ +CG C+G + E
Sbjct: 325 PGSEQI---RATIERDGL-----LQTFRDAGGIVLAN-ACGPCIGQWDRKDIKKGEKNTI 375
Query: 400 VSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTG 433
V++ NRNF GR + ++ASP A A+ G
Sbjct: 376 VTSYNRNFTGRNDANPATHAFVASPEIVTAMAIAG 410
>gnl|CDD|233362 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial.
This model represents mitochondrial forms of the TCA
cycle enzyme aconitate hydratase, also known as
aconitase and citrate hydro-lyase [Energy metabolism,
TCA cycle].
Length = 745
Score = 129 bits (327), Expect = 2e-32
Identities = 103/339 (30%), Positives = 150/339 (44%), Gaps = 35/339 (10%)
Query: 120 EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEM 179
E + PG ++LGTDSHT AG G A G+G DA L LK P L L G++
Sbjct: 142 ENYAFPGLMMLGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKL 201
Query: 180 PDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVP 239
+ KD+IL++ G ++V G T +E+ G VE LS T+CNM E G + P
Sbjct: 202 NGWTSPKDIILKLAGLLTVRGGTGYIVEYFGPGVESLSCTGMATICNMGAEIGATTSIFP 261
Query: 240 ADGTTFKYLE-----------DKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP 288
+ +YL+ + + +DE A + D+SKLEP + P +P
Sbjct: 262 FNEAMSRYLKATNRAQIAEDAKTGQYSFFKLKADEGAQYDELIEIDLSKLEPHINGPFTP 321
Query: 289 D--------NRALARECKDVKIDRVYIGSCTGGKTEDFLAA---AKVFLASGKKVKVPTF 337
D + + K+ IGSCT ED K +G K K P +
Sbjct: 322 DLSTPISKFKETVQKNGWPEKLSAGLIGSCTNSSYEDMSRCASIVKDAEQAGLKPKSPFY 381
Query: 338 LVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLG--GPKDTYARMNE 395
+ P ++++ TL G Q FE+ G A+ +CG C+G KD + E
Sbjct: 382 VTPGSEQIRA---TLERDGI-----LQTFEKFGGIVLAN-ACGPCIGQWDRKDDVKK-GE 431
Query: 396 PMVCVSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTG 433
P +++ NRNF GR G+ +LASP A + G
Sbjct: 432 PNTILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAG 470
>gnl|CDD|236424 PRK09238, PRK09238, bifunctional aconitate hydratase
2/2-methylisocitrate dehydratase; Validated.
Length = 835
Score = 105 bits (265), Expect = 3e-24
Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 16/183 (8%)
Query: 262 DEKASFLSEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLA 320
D A + + D++++ EP++A P+ PD+ L E KID V+IGSC F A
Sbjct: 650 DADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAGTKIDEVFIGSCMTNI-GHFRA 708
Query: 321 AAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCG 380
A K+ ++ ++ P T+ MD L G IF +AG P C
Sbjct: 709 AGKLLEGKKGQLPTRLWVAPPTK---MDADQLTEEGYYS-----IFGKAGARIEM-PGCS 759
Query: 381 ACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 440
C+G AR+ + ST+ RNFP R+G K +YL S AA AL G + E
Sbjct: 760 LCMG----NQARVADGATVFSTSTRNFPNRLG-KGANVYLGSAELAAVCALLGRIPTVEE 814
Query: 441 FLE 443
+ E
Sbjct: 815 YQE 817
>gnl|CDD|223978 COG1049, AcnB, Aconitase B [Energy production and conversion].
Length = 852
Score = 98.7 bits (246), Expect = 6e-22
Identities = 118/498 (23%), Positives = 188/498 (37%), Gaps = 108/498 (21%)
Query: 2 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIV 61
TL +K+ RA P + PG + + + D GP + + E + A +
Sbjct: 374 TLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGP----MTRDELKDLACL------- 422
Query: 62 IIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDY------------ 109
F++D +++ FC + + D+ PD+
Sbjct: 423 ------GFSADL-------VMQSFC---HTAAYPKPVDVKTHHTLPDFIMNRGGVSLRPG 466
Query: 110 KGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGI----GNTDAGFVLGTGKVLL 165
GV H L + P V G DSHT +F GI G+ F TG + L
Sbjct: 467 DGVIHSWLNRML--LPDTVGTGGDSHT-------RFPIGISFPAGSGLVAFAAATGVMPL 517
Query: 166 KVPPTLRFVLDGEMPDYLLAKDLI----LQII--GEISVAGATYKSMEFVGTTVE----- 214
+P ++ GEM + +DL+ I G ++V K++ F G +E
Sbjct: 518 DMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNI-FSGRILEIEGLP 576
Query: 215 RLSMEERMTLCNMVVEAGGKNGVVP-ADGTTFKYLE---------------DKTSLP--- 255
L +E+ L + E + +YL+ D +L
Sbjct: 577 DLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRI 636
Query: 256 -------YEPVY--SDEKASFLSEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRV 305
P +D A + + D++ + EP++A P+ PD+ L E KID V
Sbjct: 637 DKMEAWLANPELLEADADAEYAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGDKIDEV 696
Query: 306 YIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQI 365
+IGSC F AA K+ + ++ ++ P T+ MD L G I
Sbjct: 697 FIGSCMTNIG-HFRAAGKLLENAKGELPTRLWVAPPTK---MDAAQLTEEGYYS-----I 747
Query: 366 FEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYT 425
F +AG P C C+G AR+ + ST+ RNFP R+G K +YLAS
Sbjct: 748 FGKAGARIEM-PGCSLCMG----NQARVADGATVFSTSTRNFPNRLG-KGANVYLASAEL 801
Query: 426 AAASALTGYVTDPREFLE 443
AA A+ G + E++
Sbjct: 802 AAVCAILGKIPTVEEYMA 819
>gnl|CDD|153131 cd01581, AcnB, Aconitate hydratase B catalyses the formation of
cis-aconitate from citrate as part of the TCA cycle.
Aconitase B catalytic domain. Aconitate hydratase B
catalyses the formation of cis-aconitate from citrate as
part of the TCA cycle. Aconitase has an active (4FE-4S)
and an inactive (3FE-4S) form. The active cluster is
part of the catalytic site that interconverts citrate,
cis-aconitase and isocitrate. The domain architecture of
aconitase B is different from other aconitases in that
the catalytic domain is normally found at C-terminus for
other aconitases, but it is at N-terminus for B family.
It also has a HEAT domain before domain 4 which plays a
role in protein-protein interaction. This alignment is
the core domain including domains 1,2 and 3.
Length = 436
Score = 93.3 bits (232), Expect = 1e-20
Identities = 117/487 (24%), Positives = 178/487 (36%), Gaps = 109/487 (22%)
Query: 3 LTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVI 62
L +KI RA + PG + + + D GP + + E E A +
Sbjct: 1 LAQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGP----MTRDELKELACL-------- 48
Query: 63 IPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDY------------K 110
F++D +++ FC + + D+ + PD+
Sbjct: 49 -----GFSADL-------VMQSFC---HTAAYPKPVDVKTHRTLPDFISNRGGVALRPGD 93
Query: 111 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGI----GNTDAGFVLGTGKVLLK 166
GV H L + P V G DSHT +F GI G+ F TG + L
Sbjct: 94 GVIHSWLNRML--LPDTVGTGGDSHT-------RFPIGISFPAGSGLVAFAAATGVMPLD 144
Query: 167 VPPTLRFVLDGEMPDYLLAKDLI----LQII--GEISVAGATYKSMEFVGTTVE-----R 215
+P ++ G+M + +DL+ I G ++V K++ F G +E
Sbjct: 145 MPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNV-FNGRILEIEGLPD 203
Query: 216 LSMEERMTLCNMVVEAGGKNGVVPAD--------------------------GTTFKYLE 249
L +E+ L + E V D T + +
Sbjct: 204 LKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRII 263
Query: 250 DKTSLPYEPVY--SDEKASFLSEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVY 306
P D A + + D+ + EP++A P+ PD+ L E KID V+
Sbjct: 264 AMEEWLANPPLLEPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAGKKIDEVF 323
Query: 307 IGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIF 366
IGSC F AAAK+ L + ++ P T+ MD L G IF
Sbjct: 324 IGSCMTNIG-HFRAAAKI-LRGKEFKPTRLWVAPPTR---MDWAILQEEGYYS-----IF 373
Query: 367 EEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTA 426
+AG T P C C+G AR+ + ST+ RNF R+G K ++YL S A
Sbjct: 374 GDAGARTEM-PGCSLCMG----NQARVADGATVFSTSTRNFDNRVG-KGAEVYLGSAELA 427
Query: 427 AASALTG 433
A AL G
Sbjct: 428 AVCALLG 434
>gnl|CDD|240263 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional.
Length = 898
Score = 91.2 bits (227), Expect = 1e-19
Identities = 98/371 (26%), Positives = 144/371 (38%), Gaps = 70/371 (18%)
Query: 129 LLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDL 188
++GTDSHT G G+G +A V+ + + +P + F L G++ +++ A DL
Sbjct: 211 VVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMVLPEVVGFKLTGKLSEHVTATDL 270
Query: 189 ILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYL 248
+L + + G K +EF G V+ LS+ +R T+ NM E G G P D T YL
Sbjct: 271 VLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMGFFPIDEKTLDYL 330
Query: 249 EDKTSLPYEPV-----Y---------SDEKASFLSEYRFDISKLEPLVAKPHSP-DNRAL 293
+ +T E V Y E+ + D+S + P VA P P D L
Sbjct: 331 K-QTGRSEEKVELIEKYLKANGLFRTYAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPL 389
Query: 294 ARECKDVKID-----RVYIGSCTGGKTEDFLAAAKVFLASGKKVKV-------------- 334
D+K D +G G E+ F GK+ +
Sbjct: 390 ----SDLKKDFTACLSAPVGFKGFGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCT 445
Query: 335 ----PTFLVPATQ----------KVWMDVYTLPVPGSGGKTCSQIFEEAGCDTP------ 374
P+ ++ A KV + T PGS K ++ E +G
Sbjct: 446 NTSNPSVMLAAGLLAKKAVEKGLKVPPYIKTSLSPGS--KVVTKYLEASGLLKYLEKLGF 503
Query: 375 --ASPSCGACLG--GPKD---TYARMNEPMVCVS--TTNRNFPGRMGHKEGQIYLASPYT 425
A C C+G G D + A N +V + + NRNF GR+ YLASP
Sbjct: 504 YTAGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRANYLASPPL 563
Query: 426 AAASALTGYVT 436
A AL G V
Sbjct: 564 VVAYALAGRVN 574
>gnl|CDD|233363 TIGR01341, aconitase_1, aconitate hydratase 1. This model
represents one form of the TCA cycle enzyme aconitate
hydratase, also known as aconitase and citrate
hydro-lyase. It is found in bacteria, archaea, and
eukaryotic cytosol. It has been shown to act also as an
iron-responsive element binding protein in animals and
may have the same role in other eukaryotes [Energy
metabolism, TCA cycle].
Length = 876
Score = 89.1 bits (221), Expect = 8e-19
Identities = 101/409 (24%), Positives = 146/409 (35%), Gaps = 84/409 (20%)
Query: 102 NFKANPDYKGVCH-------------IALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATG 148
NF+ P G+ H + E P + L+GTDSHT G G
Sbjct: 152 NFRVVPPGTGIIHQVNLEYLATVVFKAEVDGELTAYP-DSLVGTDSHTTMINGLGVLGWG 210
Query: 149 IGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEF 208
+G +A + + VP + L G++ + + A DL+L + + G K +EF
Sbjct: 211 VGGIEAEAAMLGQPYYMNVPEVIGVKLTGKLQEGVTATDLVLTVTQMLRKKGVVGKFVEF 270
Query: 209 VGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLE----DKTSLPYEPVYSD-- 262
G + LS+ +R T+ NM E G G P D T +YL D + Y+
Sbjct: 271 FGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVELVEKYARAQ 330
Query: 263 -------EKASFLSEYRFDISKLEPLVAKPHSPDNRALARE-------CKDVK------- 301
E+ + D+S +EP VA P P +R RE +
Sbjct: 331 GLFYDDSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFT 390
Query: 302 -----IDRVYIGSCTGGKTEDFLAAA----------KVFLASG---KKVKVPTFLVPATQ 343
+ + G + + AA V L +G KK V
Sbjct: 391 LRKEPLKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKA------VELGL 444
Query: 344 KVWMDVYTLPVPGSGGKTCSQIFEEAGCDTP---------ASPSCGACLG--GPKDTY-- 390
KV V T PGS K + E+G P C C+G GP Y
Sbjct: 445 KVPPYVKTSLAPGS--KVVTDYLAESGL-LPYLEELGFNLVGYGCTTCIGNSGPLPKYVE 501
Query: 391 ---ARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVT 436
+ + + V + NRNF GR+ YLASP A AL G +
Sbjct: 502 EAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNID 550
>gnl|CDD|129223 TIGR00117, acnB, aconitate hydratase 2. Aconitate hydratase
(aconitase) is an enzyme of the TCA cycle. This model
describes aconitase 2, AcnB, which has weak similarity
to aconitase 1. It is found almost exclusively in the
Proteobacteria [Energy metabolism, TCA cycle].
Length = 844
Score = 88.4 bits (219), Expect = 1e-18
Identities = 60/182 (32%), Positives = 86/182 (47%), Gaps = 17/182 (9%)
Query: 262 DEKASFLSEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLA 320
D A + + D++++ EP++A P+ PD+ E + KID V+IGSC F A
Sbjct: 651 DADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQGDKIDEVFIGSCM-TNIGHFRA 709
Query: 321 AAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCG 380
A K+ A+G ++ ++ P T+ MD L G IF AG T P C
Sbjct: 710 AGKILDAAG-QLPTRLWVAPPTR---MDEQQLTEEGYYS-----IFGAAGARTEI-PGCS 759
Query: 381 ACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 440
C+G AR+ + ST+ RNFP RMG +YL S AA AL G + P E
Sbjct: 760 LCMG----NQARVADGATVFSTSTRNFPNRMG-TGANVYLGSAELAAVCALLGKIPTPEE 814
Query: 441 FL 442
+
Sbjct: 815 YQ 816
>gnl|CDD|215053 PLN00094, PLN00094, aconitate hydratase 2; Provisional.
Length = 938
Score = 86.1 bits (213), Expect = 7e-18
Identities = 58/184 (31%), Positives = 85/184 (46%), Gaps = 16/184 (8%)
Query: 261 SDEKASFLSEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFL 319
+D A + + D+ ++ EP++ P+ PD+ L E KID V+IGSC F
Sbjct: 723 ADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTGDKIDEVFIGSCM-TNIGHFR 781
Query: 320 AAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSC 379
AA K+ + ++ ++ P T+ MD L G F G T P C
Sbjct: 782 AAGKLLNDNLSQLPTRLWVAPPTK---MDEAQLKAEGYYS-----TFGTVGARTEM-PGC 832
Query: 380 GACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 439
C+G AR+ E VST+ RNFP R+G K +YLAS AA +A+ G +
Sbjct: 833 SLCMG----NQARVAEKSTVVSTSTRNFPNRLG-KGANVYLASAELAAVAAILGRLPTVE 887
Query: 440 EFLE 443
E+L
Sbjct: 888 EYLS 891
>gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain. Aconitase A
catalytic domain. This is the major form of the TCA
cycle enzyme aconitate hydratase, also known as
aconitase and citrate hydrolyase. It includes bacterial
and archaeal aconitase A, and the eukaryotic cytosolic
form of aconitase. This group also includes sequences
that have been shown to act as an iron-responsive
element (IRE) binding protein in animals and may have
the same role in other eukaryotes.
Length = 404
Score = 78.1 bits (193), Expect = 1e-15
Identities = 99/366 (27%), Positives = 138/366 (37%), Gaps = 70/366 (19%)
Query: 98 KDLGNFKANPDYKGVCH-------------IALAQEGHCRPGEVLLGTDSHTCTAGAFGQ 144
K N + P G+ H +G P + ++GTDSHT G
Sbjct: 81 KAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYP-DSVVGTDSHTTMINGLGV 139
Query: 145 FATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYK 204
G+G +A V+ + + +P + L G++ + A DL+L + + G K
Sbjct: 140 LGWGVGGIEAEAVMLGQPISMLLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGK 199
Query: 205 SMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEK 264
+EF G V +LS+ +R T+ NM E G G P D
Sbjct: 200 FVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVDTQV-------------------- 239
Query: 265 ASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTED---FLAA 321
D+S +EP V+ P P +R V I I SCT T + LAA
Sbjct: 240 ------VELDLSTVEPSVSGPKRPQDRVPLH--GSVVI--AAITSCT--NTSNPSVMLAA 287
Query: 322 ---AKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPAS 376
AK + G KVK V T L P ++ V L G E+ G
Sbjct: 288 GLLAKKAVELGLKVKPYVKTSLAPGSRVV---TKYLEASG-----LLPYLEKLGFHV-VG 338
Query: 377 PSCGACLG--GPKD----TYARMNEPMVC-VSTTNRNFPGRMGHKEGQIYLASPYTAAAS 429
C C+G GP + N+ +V V + NRNF GR+ YLASP A
Sbjct: 339 YGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLVVAY 398
Query: 430 ALTGYV 435
AL G V
Sbjct: 399 ALAGTV 404
>gnl|CDD|237246 PRK12881, acnA, aconitate hydratase; Provisional.
Length = 889
Score = 70.7 bits (174), Expect = 6e-13
Identities = 92/378 (24%), Positives = 135/378 (35%), Gaps = 94/378 (24%)
Query: 129 LLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDL 188
L+GTDSHT G G+G +A V+ V + +P + L G++ + + A DL
Sbjct: 208 LVGTDSHTTMINGIGVLGWGVGGIEAEAVMLGQPVYMLIPDVVGVELTGKLREGVTATDL 267
Query: 189 IL---QIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTF 245
+L +++ + V G K +EF G V L++ +R T+ NM E G G P D T
Sbjct: 268 VLTVTEMLRKEGVVG---KFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPVDEQTL 324
Query: 246 KYLEDKTSLPYEPV-----YS---------DEKASFLSEYRFDISKLEPLVAKPHSPDNR 291
YL T + Y+ + + D+S + P +A P P +R
Sbjct: 325 DYLR-LTGRTEAQIALVEAYAKAQGLWGDPKAEPRYTRTLELDLSTVAPSLAGPKRPQDR 383
Query: 292 ------------------------ALARECKDVKIDR-----VYIGSCTGGKTED---FL 319
A+ V + I SCT T + +
Sbjct: 384 IALGNVKSAFSDLFSKPVAENGFAKKAQTSNGVDLPDGAVAIAAITSCT--NTSNPSVLI 441
Query: 320 AA---AKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTP 374
AA AK + G VK V T L P G K ++ E AG P
Sbjct: 442 AAGLLAKKAVERGLTVKPWVKTSLAP-----------------GSKVVTEYLERAGL-LP 483
Query: 375 ---------ASPSCGACLGGPKDTYARMNEPM-------VCVSTTNRNFPGRMGHKEGQI 418
C C+G + + + V + NRNF GR+
Sbjct: 484 YLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKAN 543
Query: 419 YLASPYTAAASALTGYVT 436
+LASP A AL G V
Sbjct: 544 FLASPPLVVAYALAGTVR 561
>gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase,
Fe/S-dependent. Members of this family appear in an
operon for the degradation of propionyl-CoA via
2-methylcitrate. This family is homologous to aconitases
A and B and appears to act the part as
2-methylisocitrate dehydratase, the enzyme after PrpD
and before PrpB. In Escherichia coli, which lacks a
member of this family, 2-methylisocitrate dehydratase
activity was traced to aconitase B (TIGR00117)
(PMID:12473114).
Length = 858
Score = 68.5 bits (167), Expect = 3e-12
Identities = 86/369 (23%), Positives = 134/369 (36%), Gaps = 69/369 (18%)
Query: 118 AQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDG 177
+ G P + +GTDSHT A G A G+G +A V+ ++++P + L G
Sbjct: 185 VKNGVAFP-DTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTG 243
Query: 178 EMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGV 237
+ + A D++L + + +EF G L++ +R T+ NM E G +
Sbjct: 244 KRQPGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAM 303
Query: 238 VPADGTTFKYL-----ED------KTSLPYEPVYSD--EKASFLSEYRFDISKLEPLVAK 284
D T YL E +T +++D + A + FD+S + +A
Sbjct: 304 FYIDEQTIDYLKLTGREPEQVKLVETYAKAAGLWADSLKHAVYERVLEFDLSSVVRNMAG 363
Query: 285 PHSPDNRALARECKDVKIDRVY-----------------IGSCTGGKTEDFLAAAKVFLA 327
P +P R + I I SCT + AA +
Sbjct: 364 PSNPHARVPTSDLAARGIAGPAEEQPEGLMPDGAVIIAAITSCTNTSNPRNVVAAGLLAR 423
Query: 328 SGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASP--------SC 379
+ ++ + +K W V T PGS K EEAG +C
Sbjct: 424 NANQLGL-------KRKPW--VKTSFAPGS--KVAQLYLEEAGLLPELEQLGFGIVAFAC 472
Query: 380 GACLGGP-------------KDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTA 426
C G +D YA V + NRNF GR+ Q +LASP
Sbjct: 473 TTCNGMSGALDPVIQQEIIDRDLYA------TAVLSGNRNFDGRIHPYAKQAFLASPPLV 526
Query: 427 AASALTGYV 435
A A+ G +
Sbjct: 527 VAYAIAGTI 535
>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase.
Length = 936
Score = 68.3 bits (167), Expect = 4e-12
Identities = 95/377 (25%), Positives = 137/377 (36%), Gaps = 81/377 (21%)
Query: 129 LLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDL 188
++GTDSHT G G+G +A + + + +P + F L G++ D + A DL
Sbjct: 243 VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDL 302
Query: 189 ILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYL 248
+L + + G K +EF G + LS+ +R T+ NM E G G P D T +YL
Sbjct: 303 VLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 362
Query: 249 E-----------------------DKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKP 285
+ D E VYS S+L D+ +EP ++ P
Sbjct: 363 KLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYS----SYL---ELDLEDVEPCISGP 415
Query: 286 HSPDNRALARE-------CKDVKI------------DRVYIGSCTGGKTE----DFLAAA 322
P +R +E C D K+ +V S G E + AA
Sbjct: 416 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAA 475
Query: 323 ----------KVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKT-------CSQI 365
V L +G K L K W + T PGSG T +
Sbjct: 476 ITSCTNTSNPSVMLGAGLVAKKACEL-GLEVKPW--IKTSLAPGSGVVTKYLLKSGLQKY 532
Query: 366 FEEAGCDTPASPSCGACLGGPKDTYARMNEPMV-------CVSTTNRNFPGRMGHKEGQI 418
+ G C C+G + + + V + NRNF GR+
Sbjct: 533 LNQQGFHI-VGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRAN 591
Query: 419 YLASPYTAAASALTGYV 435
YLASP A AL G V
Sbjct: 592 YLASPPLVVAYALAGTV 608
>gnl|CDD|183125 PRK11413, PRK11413, putative hydratase; Provisional.
Length = 751
Score = 64.6 bits (158), Expect = 4e-11
Identities = 107/394 (27%), Positives = 146/394 (37%), Gaps = 100/394 (25%)
Query: 114 HIAL----AQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPP 169
HIA+ +E G+++LG+DSHT GA G A G G G L+K
Sbjct: 126 HIAVIHQYMREMMAGGGKMILGSDSHT-RYGALGTMAVGEG----------GGELVK--Q 172
Query: 170 TLRFVLDGEMPD----YLLAK--------DLILQIIGEISVAGATY-KSMEFVGTTVERL 216
L D + P YL K D+ L IIG + G K MEFVG V L
Sbjct: 173 LLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSAL 232
Query: 217 SMEERMTLCNMVVEAGGKNGVVPADGTTFKYL------EDKTSL-PYEPVYSDEKASFLS 269
S + R + M E + + D +L +D L P Y D
Sbjct: 233 STDFRNGVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDYCELNPQPMAYYD------G 286
Query: 270 EYRFDISKLEPLVAKPHSPDN--------------------RALARECKDVKI---DRVY 306
D+S ++P++A P P N + K+ D++
Sbjct: 287 CISVDLSAIKPMIALPFHPSNVYEIDELNQNLTDILREVEIESERVAHGKAKLSLLDKIE 346
Query: 307 ----------IGSCTGGKTEDFLAAAKVFLASGKKVKVPTF---LVPATQKVWMDVYTLP 353
I C+GG E+ +AAA G+ TF + P++Q V+MD L
Sbjct: 347 NGRLKVQQGIIAGCSGGNYENVIAAANAL--RGQSCGNDTFSLSVYPSSQPVFMD---LA 401
Query: 354 VPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGH 413
G AG + CG C G DT A N + TT RNFP R G
Sbjct: 402 KKGVVAD-----LMGAGA-IIRTAFCGPCFGA-GDTPA--NNGLSIRHTT-RNFPNREGS 451
Query: 414 K--EGQIY---LASPYTAAASALT-GYVTDPREF 441
K GQ+ L + AA+A GY+T E
Sbjct: 452 KPANGQMSAVALMDARSIAATAANGGYLTSATEL 485
>gnl|CDD|236445 PRK09277, PRK09277, aconitate hydratase; Validated.
Length = 888
Score = 51.7 bits (125), Expect = 6e-07
Identities = 65/225 (28%), Positives = 96/225 (42%), Gaps = 46/225 (20%)
Query: 102 NFKANPDYKGVCHIA----LAQEGHCRPG-------EVLLGTDSHTCTAGAFGQFATGIG 150
NF+ P G+CH LA R + L+GTDSHT G G+G
Sbjct: 170 NFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVG 229
Query: 151 NTDAGFV-LGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLIL---QIIGEISVAGATYKSM 206
+A LG + +P + L G++P+ + A DL+L +++ + V G K +
Sbjct: 230 GIEAEAAMLGQ-PSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVG---KFV 285
Query: 207 EFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYL------EDKTSL------ 254
EF G + LS+ +R T+ NM E G G P D T YL E++ +L
Sbjct: 286 EFFGEGLASLSLADRATIANMAPEYGATCGFFPIDEETLDYLRLTGRDEEQVALVEAYAK 345
Query: 255 --------PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNR 291
EPVY+D D+S +EP +A P P +R
Sbjct: 346 AQGLWRDPLEEPVYTD-------VLELDLSTVEPSLAGPKRPQDR 383
>gnl|CDD|224716 COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and
metabolism].
Length = 142
Score = 37.3 bits (87), Expect = 0.004
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 240 ADGTTFKYLEDKTSLPYEPVYS-----DEK-ASFLSEYRFD--ISKLEPLVAKPHSPDNR 291
A GTT +++ T L + S D++ + ++E + D I +PL A+PH PD +
Sbjct: 37 ATGTTGGLIQEATGLNVHRLKSGPMGGDQQIGALIAEGKIDVLIFFWDPLTAQPHDPDVK 96
Query: 292 ALAREC 297
AL R
Sbjct: 97 ALLRLA 102
>gnl|CDD|232849 TIGR00160, MGSA, methylglyoxal synthase. Methylglyoxal synthase
(MGS) generates methylglyoxal (MG), a toxic metabolite
(that may also be a regulatory metabolite and) that is
detoxified, prinicipally, through a pathway involving
glutathione and glyoxylase I. Totemeyer, et al.
(MUID:98149311) propose that, during a loss of control
over carbon flux, with accumulation of phosphorylated
sugars and depletion of phosphate, as might happen
during a rapid shift to a richer medium, MGS aids the
cell by converting some dihydroxyacetone phosphate
(DHAP) to MG and phosphate. This is therefore an
alternative to triosephosphate isomerase and the
remainder of the glycolytic pathway for the disposal of
DHAP during the stress of a sudden increase in available
sugars [Energy metabolism, Other].
Length = 143
Score = 34.8 bits (80), Expect = 0.026
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 234 KNGVVPADGTTFKYLEDKTSLPYEPVYS-----DEK-ASFLSEYRFD--ISKLEPLVAKP 285
+ A GTT + + T L + V S D++ + ++E + D I +PL A+P
Sbjct: 29 SRHDLYATGTTGELIRRATGLAIDTVLSGPMGGDQQIGALIAEGKIDAVIFFWDPLNAQP 88
Query: 286 HSPDNRALARECKDVKIDRVY-IGSCTGGKTEDFL 319
H PD +AL R C VY I T T DFL
Sbjct: 89 HEPDVKALLRLCT------VYNIPLATNVATADFL 117
>gnl|CDD|238710 cd01422, MGS, Methylglyoxal synthase catalyzes the enolization of
dihydroxyacetone phosphate (DHAP) to produce
methylglyoxal. The first part of the catalytic mechanism
is believed to be similar to TIM (triosephosphate
isomerase) in that both enzymes utilize DHAP to form an
ene-diolate phosphate intermediate. In MGS, the second
catalytic step is characterized by the elimination of
phosphate and collapse of the enediolate to form
methylglyoxal instead of reprotonation to form the
isomer glyceraldehyde 3-phosphate, as in TIM. This is
the first reaction in the methylglyoxal bypass of the
Embden-Myerhoff glycolytic pathway and is believed to
provide physiological benefits under non-ideal growth
conditions in bacteria.
Length = 115
Score = 34.1 bits (79), Expect = 0.027
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 240 ADGTTFKYLEDKTSLPYEPVYS-----DEK-ASFLSEYRFD--ISKLEPLVAKPHSPDNR 291
A GTT +++ T L + S D++ + ++E D I +PL A+PH PD +
Sbjct: 32 ATGTTGLLIQEATGLTVNRMKSGPLGGDQQIGALIAEGEIDAVIFFRDPLTAQPHEPDVK 91
Query: 292 ALARECKDVKIDRVY-IGSCTGGKTEDFL 319
AL R C VY I T T D +
Sbjct: 92 ALLRLC------DVYNIPLATNRSTADAI 114
>gnl|CDD|179969 PRK05234, mgsA, methylglyoxal synthase; Validated.
Length = 142
Score = 31.3 bits (72), Expect = 0.37
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 240 ADGTTFKYLEDKTSLPYEPVYS-----DEK-ASFLSEYRFD--ISKLEPLVAKPHSPDNR 291
A GTT +++ T L + S D++ + ++E + D I +PL A+PH PD +
Sbjct: 37 ATGTTGGLIQEATGLDVTRLLSGPLGGDQQIGALIAEGKIDMLIFFRDPLTAQPHDPDVK 96
Query: 292 ALARECKDV 300
AL R DV
Sbjct: 97 ALLRLA-DV 104
>gnl|CDD|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system
protein KefC; Provisional.
Length = 621
Score = 31.9 bits (73), Expect = 0.66
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 129 LLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDL 188
LL + T GAF A + A VLG G+ + + P LRFV + + A L
Sbjct: 169 LLAASGASTTLGAFALSALKVAGALALVVLG-GRYVTR--PALRFVARSGLREVFTAVAL 225
Query: 189 IL 190
L
Sbjct: 226 FL 227
>gnl|CDD|182649 PRK10689, PRK10689, transcription-repair coupling factor;
Provisional.
Length = 1147
Score = 31.6 bits (72), Expect = 1.0
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 290 NRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPAT 342
N L+ C+ + +DR+ G GKTE + AA + + + K+V V LVP T
Sbjct: 610 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAV---LVPTT 659
>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal
transduction mechanisms].
Length = 890
Score = 31.5 bits (72), Expect = 1.2
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 304 RVYIGSCTG-GKTEDFLAAAKVFLASGKKVKV 334
++++G+ G GKT L+ A+ LA G V +
Sbjct: 24 KIFLGAAPGVGKTYAMLSEAQRLLAEGVDVVI 55
>gnl|CDD|235169 PRK03879, PRK03879, ribonuclease P protein component 1; Validated.
Length = 96
Score = 29.1 bits (66), Expect = 1.4
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 193 IG-EISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKY 247
IG ++ V +T S+ VG R+ E R TL V+E GK +VP DG TF++
Sbjct: 14 IGLKVEVVDSTNPSL--VGIK-GRVVDETRNTL---VIETDGKEWMVPKDGATFEF 63
>gnl|CDD|216387 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e/S12e/Gadd45
family. This family includes: Ribosomal L7A from
metazoa, Ribosomal L8-A and L8-B from fungi, 30S
ribosomal protein HS6 from archaebacteria, 40S ribosomal
protein S12 from eukaryotes, Ribosomal protein L30 from
eukaryotes and archaebacteria. Gadd45 and MyD118.
Length = 95
Score = 28.7 bits (65), Expect = 1.6
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Query: 59 KIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFY--DIKDLG 101
K+VII D V +L C E+N+ Y Y K+LG
Sbjct: 33 KLVII------AEDCDPEEKVKLLPALCKEKNVPYVYVPSKKELG 71
>gnl|CDD|217251 pfam02844, GARS_N, Phosphoribosylglycinamide synthetase, N domain.
Phosphoribosylglycinamide synthetase catalyzes the
second step in the de novo biosynthesis of purine. The
reaction catalyzed by Phosphoribosylglycinamide
synthetase is the ATP- dependent addition of
5-phosphoribosylamine to glycine to form
5'phosphoribosylglycinamide. This domain is related to
the N-terminal domain of biotin carboxylase/carbamoyl
phosphate synthetase (see pfam00289).
Length = 101
Score = 29.0 bits (66), Expect = 1.6
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 275 ISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAA--AKVFLASGKKV 332
++L V D ALA K+ ID V +G E L A A+G V
Sbjct: 37 TAQLAKNVNVIDETDFEALADFAKEENIDLVVVGP------EAPLVAGIVDALRAAGIPV 90
>gnl|CDD|226444 COG3934, COG3934, Endo-beta-mannanase [Carbohydrate transport and
metabolism].
Length = 587
Score = 30.3 bits (68), Expect = 2.4
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 196 ISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFK---YLEDKT 252
AG+ + L ++ +TL + GG N +P G + K
Sbjct: 59 YRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGEQSPDNVIYDPKF 118
Query: 253 SLPYEPVYSDEKASFLSEYRFDISKL------EPLVAKPHSPDN 290
P + D + Y+ D + EPLV P S +N
Sbjct: 119 RGPGKKYVED----LVKPYKLDPTIAGWALRNEPLVEAPISVNN 158
>gnl|CDD|215806 pfam00229, TNF, TNF(Tumour Necrosis Factor) family.
Length = 127
Score = 28.5 bits (64), Expect = 3.0
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 16 QLSPGDNVWVNVDILMTHDVCGPGS--FGIFK 45
QL GD + VNV L D+ PG FG F
Sbjct: 95 QLRAGDRLSVNVSNLSLVDLSEPGKTFFGAFL 126
>gnl|CDD|233923 TIGR02551, SpaO_YscQ, type III secretion system apparatus protein
YscQ/HrcQ. Genes in this family are found in type III
secretion operons. The gene (YscQ) in Yersinia is
essential for YOPs secretion , while SpaO in Shigella is
involved in the Surface Presentation of Antigens
apparatus found on the virulence plasmid , and HrcQ is
involved in the Harpin secretory system in organisms
like Pseudomonas syringae [Protein fate, Protein and
peptide secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 298
Score = 29.7 bits (67), Expect = 3.3
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 111 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATG 148
G +AL + G+VLL + AG G
Sbjct: 146 GSSRLALDELRSLEVGDVLLLDNPSAARAGLGALLLWG 183
>gnl|CDD|220962 pfam11066, DUF2867, Protein of unknown function (DUF2867). This
bacterial family of proteins have no known function.
Length = 146
Score = 28.4 bits (64), Expect = 4.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 346 WMDVYTLPVPGSGGKTCSQIFEEAGCDTPA 375
++DV+++P+PG T Q E PA
Sbjct: 10 FIDVFSVPLPGGARTTAEQAALEIFSHPPA 39
>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III
myosin-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), Class III myosin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin-like subfamily is part of a larger
superfamily that includes the catalytic domains of
other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Class III
myosins are motor proteins with an N-terminal kinase
catalytic domain and a C-terminal actin-binding motor
domain. Class III myosins are present in the
photoreceptors of invertebrates and vertebrates and in
the auditory hair cells of mammals. The kinase domain
of myosin III can phosphorylate several cytoskeletal
proteins, conventional myosin regulatory light chains,
and can autophosphorylate the C-terminal motor domain.
Myosin III may play an important role in maintaining
the structural integrity of photoreceptor cell
microvilli. It may also function as a cargo carrier
during light-dependent translocation, in photoreceptor
cells, of proteins such as transducin and arrestin. The
Drosophila class III myosin, called NinaC (Neither
inactivation nor afterpotential protein C), is critical
in normal adaptation and termination of photoresponse.
Vertebrates contain two isoforms of class III myosin,
IIIA and IIIB. This subfamily also includes mammalian
NIK-like embryo-specific kinase (NESK), Traf2- and
Nck-interacting kinase (TNIK), mitogen-activated
protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4
or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are
involved in some MAPK signaling pathways by activating
a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each
MAPK cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAP3K to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. MAPK signaling cascades are important
in mediating cellular responses to extracellular
signals.
Length = 275
Score = 29.2 bits (66), Expect = 4.1
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 34 DVCGPGSFG-IFK---KEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQ 89
+V G G++G ++K K+ G+ + KI+ I +E +ILR +
Sbjct: 12 EVIGEGTYGKVYKARHKKTGQLVAI----KIM----DIIEDEEEEIKEEYNILRKYSNHP 63
Query: 90 NIKYFY 95
NI FY
Sbjct: 64 NIATFY 69
>gnl|CDD|181735 PRK09262, PRK09262, hypothetical protein; Provisional.
Length = 225
Score = 29.1 bits (66), Expect = 4.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 114 HIALAQEGHCRPGEVLLGTDSHTCTAGAFGQ-FAT 147
H+A+ Q C+PG+VL+ + CT G FG AT
Sbjct: 69 HVAVEQ---CQPGDVLVVAPTSPCTDGFFGDLLAT 100
>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy
production and conversion].
Length = 588
Score = 28.8 bits (65), Expect = 6.1
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 36 CGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDF 85
PG FG K IVI ER N ++L++F
Sbjct: 228 AVPGPFGSGKTVSQHTLSKLADGDIVIYVGCG-----ERGNEMTEVLQEF 272
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 28.6 bits (64), Expect = 6.8
Identities = 18/115 (15%), Positives = 28/115 (24%), Gaps = 15/115 (13%)
Query: 238 VPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPH------SPDNR 291
V G Y+ S S + D + L SPD
Sbjct: 20 VSPPGGRLAYILTGLDFLK-----PLYKS--SLWVSDGKTVRLLTFGGGVSELRWSPDGS 72
Query: 292 ALARECKD-VKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKV 345
LA D ++ ++Y+ GG S ++ K
Sbjct: 73 VLAFVSTDGGRVAQLYLVD-VGGLITKTAFGVSDARWSPDGDRIAFLTAEGASKR 126
>gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal. This
domain is often found in association with the kinase
domains pfam00069 or pfam07714. In many proteins it is
duplicated. It contains six conserved cysteines which
are involved in disulphide bridges. It has a role in
salt stress response and has antifungal activity.
Length = 106
Score = 27.0 bits (60), Expect = 8.4
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 116 ALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTG 161
LAQ CR L +D +C A A + N G +
Sbjct: 56 GLAQ---CRGD--LSASDCRSCLATAVSELRRCCPNKKGGRIWYDS 96
>gnl|CDD|223781 COG0709, SelD, Selenophosphate synthase [Amino acid transport and
metabolism].
Length = 346
Score = 28.5 bits (64), Expect = 8.5
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 28 DILMTHDVCGPGSFGIFKKEFGENAKV 54
+ DV G G G KE E A V
Sbjct: 221 GVAAMTDVTGFGLLGHL-KEMAEGAGV 246
>gnl|CDD|224118 COG1197, Mfd, Transcription-repair coupling factor (superfamily II
helicase) [DNA replication, recombination, and repair /
Transcription].
Length = 1139
Score = 28.4 bits (64), Expect = 9.1
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 297 CKDVKIDRVYIGSCTGGKTEDFLAAAKVFLA--SGKKVKVPTFLVPAT 342
+DR+ G GKTE + AA F A GK+V V LVP T
Sbjct: 611 ESGKPMDRLICGDVGFGKTEVAMRAA--FKAVMDGKQVAV---LVPTT 653
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.416
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,104,379
Number of extensions: 2277807
Number of successful extensions: 1977
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1875
Number of HSP's successfully gapped: 75
Length of query: 443
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 343
Effective length of database: 6,502,202
Effective search space: 2230255286
Effective search space used: 2230255286
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)