RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013449
(443 letters)
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 490
Score = 327 bits (839), Expect = e-108
Identities = 94/482 (19%), Positives = 158/482 (32%), Gaps = 74/482 (15%)
Query: 1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 60
+L +K+ RA + PG + + + D GP + K + + +
Sbjct: 10 FSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKD---LACLGFSADLV 66
Query: 61 VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 120
+ H L DF M + GV H L
Sbjct: 67 MQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLR------------PGDGVIHSWL--N 112
Query: 121 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 180
P V G DSHT G+ F TG + L +P ++ G+M
Sbjct: 113 RMLLPDTVGTGGDSHTRFPIGIS---FPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQ 169
Query: 181 DYLLAKDLILQIIGEISVAGAT----------YKSMEFVGTTVERLSMEERMTLCNMVVE 230
+ +DL+ I G + + L +E+ L + E
Sbjct: 170 PGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAE 229
Query: 231 AGGKNGVVPA-DGTTFKYLEDKTSLPY---------------------------EPVYSD 262
+ +YL L E + +D
Sbjct: 230 RSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEAD 289
Query: 263 EKASFLSEYRFDISKLEP-LVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAA 321
A + + D++ ++ ++ P+ PD+ + KID V+IGSC F AA
Sbjct: 290 ADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCM-TNIGHFRAA 348
Query: 322 AKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGA 381
K+ A ++ ++ P T+ + + +F ++G P C
Sbjct: 349 GKLLDAHKGQLPTRLWVAPPTRMDAAQLTE--------EGYYSVFGKSGARI-EIPGCSL 399
Query: 382 CLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 441
C+G AR+ + VST+ RNFP R+G ++LAS AA +AL G + P E+
Sbjct: 400 CMGNQ----ARVADGATVVSTSTRNFPNRLG-TGANVFLASAELAAVAALIGKLPTPEEY 454
Query: 442 LE 443
Sbjct: 455 QT 456
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein
1, N-terminal domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 629
Score = 254 bits (650), Expect = 8e-79
Identities = 83/466 (17%), Positives = 146/466 (31%), Gaps = 77/466 (16%)
Query: 45 KKEFGENAKVWDREKIVIIPDHYI----FTSDERANRNVDI--------LRDFCMEQNIK 92
KK G+ K+ ++ DH I + +N D+
Sbjct: 104 KKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAF 163
Query: 93 YFYDIKDLGNFKANPDYKG-VCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGN 151
+ I G+ + + + Q+G+ + L+GTDSHT G G+G
Sbjct: 164 HNMRIIPPGSGIIHQVNLEYLARVVFDQDGYY-YPDSLVGTDSHTTMIDGLGILGWGVGG 222
Query: 152 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGT 211
+A V+ + + +P + + L G+ + + D++L I + G K +EF G
Sbjct: 223 IEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGP 282
Query: 212 TVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYL----------------EDKTSLP 255
V +LS+ +R T+ NM E G P D + YL +
Sbjct: 283 GVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAVGMF 342
Query: 256 YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC------------------ 297
+ + F D+ + P + P P ++ +
Sbjct: 343 RDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQ 402
Query: 298 ---------------------KDVKIDRVYIGSCTGGKTEDFLAAAKVF----LASGKKV 332
+ I SCT + A + + +G V
Sbjct: 403 VAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNV 462
Query: 333 K--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTY 390
+ T L P + V + V + + + G +
Sbjct: 463 MPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVVG--YGCMTCIGNSGPLPEPVVEAI 520
Query: 391 ARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVT 436
+ + V V + NRNF GR+ YLASP A A+ G +
Sbjct: 521 TQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIR 566
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos
taurus) [TaxId: 9913]}
Length = 527
Score = 251 bits (641), Expect = 2e-78
Identities = 111/464 (23%), Positives = 176/464 (37%), Gaps = 41/464 (8%)
Query: 1 MTLTEKIFSR----ASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWD 56
+TL+EKI + + + + D + D + F KV
Sbjct: 35 LTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS--SGLPKVAV 92
Query: 57 REKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIA 116
I DH I +++ +D E G P + I
Sbjct: 93 PSTIHC--DHLIEA-QLGGEKDLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQII 149
Query: 117 LAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLD 176
L E + PG +L+GTDSHT G G G+G DA V+ LK P + L
Sbjct: 150 L--ENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLT 207
Query: 177 GEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNG 236
G + + KD+IL++ G ++V G T +E+ G V+ +S T+CNM E G
Sbjct: 208 GSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTS 267
Query: 237 VVPADGTTFKYLE--------DKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP 288
V P + KYL + + + D + ++S+L+P + P +P
Sbjct: 268 VFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHINGPFTP 327
Query: 289 DNR--------ALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVF---LASGKKVKVPTF 337
D +E + I IGSCT ED +A V LA G K K
Sbjct: 328 DLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFT 387
Query: 338 LVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPM 397
+ P ++++ + +Q+ + G A +CG C+G + E
Sbjct: 388 ITPGSEQIRATIE--------RDGYAQVLRDVGGIVLA-NACGPCIGQWDRKDIKKGEKN 438
Query: 398 VCVSTTNRNFPGRMG-HKEGQIYLASPYTAAASALTGYVT-DPR 439
V++ NRNF GR + E ++ SP A A+ G + +P
Sbjct: 439 TIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPE 482
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 27.6 bits (60), Expect = 3.0
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 256 YEPVYSDEKASFLSEYRFD 274
+ P+Y+ +SF Y FD
Sbjct: 270 FSPIYTGNISSFQQCYIFD 288
>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli
[TaxId: 562]}
Length = 620
Score = 27.2 bits (59), Expect = 4.3
Identities = 3/41 (7%), Positives = 15/41 (36%)
Query: 44 FKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRD 84
+ W+ + I+P+ + + +++++
Sbjct: 50 QPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKR 90
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 6
{Streptomyces antibioticus [TaxId: 1890]}
Length = 54
Score = 24.6 bits (54), Expect = 4.7
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 356 GSGGKTCSQIFEEAGCD 372
G + +QI E+ G +
Sbjct: 19 GPKRQMINQIQEDTGAE 35
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 26.2 bits (57), Expect = 5.3
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 305 VYIGSCTGGKTEDFLAAAKVFLASGKKVKV 334
V +G GK+ + + + F + K V
Sbjct: 6 VILGPMFSGKSTELMRRVRRFQIAQYKCLV 35
>d1dzfa1 c.52.3.1 (A:5-143) Eukaryotic RPB5 N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 139
Score = 26.0 bits (57), Expect = 5.6
Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 11/67 (16%)
Query: 40 SFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRD---FCMEQNIKYFYD 96
FK ++ ++ R+ + + ++E ++ D+ FC E ++
Sbjct: 34 PLEDFKAKYCDSMGRPQRKMMSFQANP----TEESISKFPDMGSLWVEFCDEPSVG---- 85
Query: 97 IKDLGNF 103
+K + F
Sbjct: 86 VKTMKTF 92
>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 91
Score = 25.0 bits (55), Expect = 7.2
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 282 VAKPHSPDNRALARECKDVK-IDRVYI 307
V KPH P A + +++ +D V I
Sbjct: 11 VLKPHEPKTIVFALKLSELENVDGVNI 37
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 26.2 bits (56), Expect = 7.3
Identities = 18/120 (15%), Positives = 26/120 (21%), Gaps = 5/120 (4%)
Query: 301 KIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGK 360
K D + IG+ GG AA G K + K + L V K
Sbjct: 3 KFDVIVIGAGPGG-----YVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSK 57
Query: 361 TCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYL 420
+ + G G M + + G
Sbjct: 58 ALLDSSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLF 117
>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 93
Score = 25.0 bits (55), Expect = 7.5
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 282 VAKPHSPDNRALARECKDVK-IDRVYI 307
+ KPH P A+ +++ ++ V I
Sbjct: 11 ILKPHEPIIPEYAKYLSELRGVEGVNI 37
>d1ly2a1 g.18.1.1 (A:0-66) Complement receptor 2, cr2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 24.6 bits (53), Expect = 7.7
Identities = 5/19 (26%), Positives = 6/19 (31%)
Query: 122 HCRPGEVLLGTDSHTCTAG 140
C L+G S C
Sbjct: 31 SCSGTFRLIGEKSLLCITK 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.416
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,741,056
Number of extensions: 85269
Number of successful extensions: 280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 15
Length of query: 443
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 355
Effective length of database: 1,199,356
Effective search space: 425771380
Effective search space used: 425771380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)