Query 013450
Match_columns 443
No_of_seqs 147 out of 461
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 03:58:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02291 phospho-2-dehydro-3-d 100.0 3E-180 7E-185 1369.6 37.4 374 69-442 18-391 (474)
2 TIGR01358 DAHP_synth_II 3-deox 100.0 4E-180 8E-185 1363.4 35.6 371 71-442 1-371 (443)
3 PF01474 DAHP_synth_2: Class-I 100.0 5E-177 1E-181 1339.7 21.3 373 70-442 1-374 (439)
4 COG3200 AroG 3-deoxy-D-arabino 100.0 3E-173 6E-178 1283.3 30.3 373 69-442 3-375 (445)
5 PF00793 DAHP_synth_1: DAHP sy 94.5 0.018 4E-07 57.3 1.9 97 326-425 108-209 (270)
6 PRK12755 phospho-2-dehydro-3-d 93.8 0.14 3.1E-06 53.2 6.7 99 326-425 158-276 (353)
7 TIGR00034 aroFGH phospho-2-deh 93.8 0.14 2.9E-06 53.3 6.4 97 328-425 154-269 (344)
8 PRK09261 phospho-2-dehydro-3-d 93.5 0.1 2.2E-06 54.2 5.0 104 321-425 152-275 (349)
9 PRK13398 3-deoxy-7-phosphohept 92.8 0.52 1.1E-05 47.0 8.6 91 327-422 112-208 (266)
10 KOG2599 Pyridoxal/pyridoxine/p 91.9 0.42 9.1E-06 48.8 6.6 85 337-421 34-123 (308)
11 PRK13396 3-deoxy-7-phosphohept 89.6 0.88 1.9E-05 47.4 6.7 91 326-421 185-282 (352)
12 PRK08673 3-deoxy-7-phosphohept 87.5 2.7 5.9E-05 43.5 8.7 93 327-423 178-275 (335)
13 COG2240 PdxK Pyridoxal/pyridox 87.5 1.5 3.1E-05 44.7 6.6 65 358-422 50-116 (281)
14 PRK05756 pyridoxamine kinase; 86.7 1.7 3.7E-05 42.4 6.4 65 357-421 50-116 (286)
15 PLN03033 2-dehydro-3-deoxyphos 85.6 1.8 3.9E-05 44.3 6.0 87 326-420 107-199 (290)
16 TIGR00687 pyridox_kin pyridoxa 85.4 2.1 4.6E-05 41.7 6.3 62 357-418 50-113 (286)
17 PRK12822 phospho-2-dehydro-3-d 81.0 4.9 0.00011 42.3 7.2 97 328-425 159-274 (356)
18 PRK13397 3-deoxy-7-phosphohept 80.2 4.5 9.7E-05 40.5 6.4 91 326-420 99-194 (250)
19 PRK05198 2-dehydro-3-deoxyphos 80.1 4 8.7E-05 41.3 6.0 87 326-420 101-193 (264)
20 TIGR01362 KDO8P_synth 3-deoxy- 79.2 4.7 0.0001 40.7 6.2 87 326-420 93-185 (258)
21 PRK12756 phospho-2-dehydro-3-d 79.1 6.2 0.00013 41.5 7.2 95 330-425 160-273 (348)
22 TIGR01361 DAHP_synth_Bsub phos 78.5 6.2 0.00013 39.2 6.8 92 327-422 110-206 (260)
23 PRK12457 2-dehydro-3-deoxyphos 76.1 7.2 0.00016 39.9 6.5 90 326-420 107-201 (281)
24 cd01173 pyridoxal_pyridoxamine 73.4 8.7 0.00019 36.5 6.1 67 350-418 40-111 (254)
25 PTZ00344 pyridoxal kinase; Pro 73.1 9.8 0.00021 37.6 6.6 65 356-420 52-118 (296)
26 cd02803 OYE_like_FMN_family Ol 71.7 7.7 0.00017 38.5 5.5 127 266-412 137-285 (327)
27 PF10096 DUF2334: Uncharacteri 69.7 8.1 0.00018 37.8 5.0 68 357-429 9-84 (243)
28 PLN02978 pyridoxal kinase 68.1 11 0.00023 37.9 5.6 62 359-420 65-127 (308)
29 PLN03033 2-dehydro-3-deoxyphos 59.3 15 0.00032 37.9 4.8 50 392-442 217-269 (290)
30 cd04883 ACT_AcuB C-terminal AC 56.4 24 0.00053 26.8 4.6 35 375-413 36-70 (72)
31 cd02931 ER_like_FMN Enoate red 52.5 20 0.00043 37.3 4.6 89 268-375 148-263 (382)
32 cd02067 B12-binding B12 bindin 52.4 50 0.0011 28.0 6.3 55 355-415 31-87 (119)
33 cd02685 MIT_C MIT_C; domain fo 50.2 47 0.001 31.2 6.1 66 365-431 37-108 (148)
34 PRK13296 tRNA CCA-pyrophosphor 49.6 26 0.00057 37.1 4.9 64 213-287 128-203 (360)
35 PLN03007 UDP-glucosyltransfera 48.8 37 0.00079 36.3 6.0 37 381-417 285-323 (482)
36 PRK13523 NADPH dehydrogenase N 48.7 25 0.00053 36.2 4.5 88 267-375 139-238 (337)
37 cd04738 DHOD_2_like Dihydrooro 47.5 21 0.00046 36.2 3.8 38 351-389 203-240 (327)
38 COG1448 TyrB Aspartate/tyrosin 45.8 5.9 0.00013 42.2 -0.4 37 387-433 108-146 (396)
39 TIGR01309 L30P_arch 50S riboso 43.9 16 0.00034 34.2 2.0 110 79-205 26-146 (152)
40 cd02930 DCR_FMN 2,4-dienoyl-Co 43.1 29 0.00063 35.5 4.0 92 267-377 134-237 (353)
41 PRK12595 bifunctional 3-deoxy- 42.0 83 0.0018 33.0 7.2 89 326-420 202-297 (360)
42 COG0722 AroG 3-deoxy-D-arabino 40.2 1E+02 0.0022 32.7 7.3 110 315-425 146-275 (351)
43 PRK10887 glmM phosphoglucosami 39.2 57 0.0012 34.3 5.5 44 368-414 158-201 (443)
44 cd08555 PI-PLCc_GDPD_SF Cataly 39.1 87 0.0019 28.7 6.1 63 355-417 86-159 (179)
45 cd04741 DHOD_1A_like Dihydroor 38.3 43 0.00094 33.5 4.3 49 341-389 144-197 (294)
46 cd02071 MM_CoA_mut_B12_BD meth 38.2 1.1E+02 0.0024 26.4 6.4 55 355-415 31-87 (122)
47 TIGR01036 pyrD_sub2 dihydrooro 37.7 33 0.00071 35.3 3.4 57 332-389 181-248 (335)
48 cd05800 PGM_like2 This PGM-lik 35.9 80 0.0017 33.3 6.0 15 407-423 172-186 (461)
49 PF14658 EF-hand_9: EF-hand do 35.9 37 0.0008 27.9 2.8 35 343-384 21-55 (66)
50 PF12617 LdpA_C: Iron-Sulfur b 35.1 81 0.0017 30.7 5.4 59 363-422 20-81 (183)
51 PLN02826 dihydroorotate dehydr 34.8 41 0.00088 35.9 3.7 54 332-386 231-297 (409)
52 PRK14314 glmM phosphoglucosami 34.4 53 0.0012 34.6 4.4 46 366-414 162-207 (450)
53 TIGR02826 RNR_activ_nrdG3 anae 33.6 85 0.0018 28.7 5.1 50 358-412 43-92 (147)
54 PRK05286 dihydroorotate dehydr 33.4 52 0.0011 33.8 4.1 37 351-388 212-248 (344)
55 cd01828 sialate_O-acetylestera 33.2 1.5E+02 0.0032 26.0 6.4 75 363-441 34-119 (169)
56 PRK02506 dihydroorotate dehydr 32.8 43 0.00093 33.9 3.3 37 343-379 146-186 (310)
57 PRK06252 methylcobalamin:coenz 32.8 33 0.00071 34.3 2.5 50 393-442 178-230 (339)
58 PF04136 Sec34: Sec34-like fam 32.7 15 0.00033 34.0 0.1 41 262-314 94-134 (157)
59 cd01829 SGNH_hydrolase_peri2 S 32.1 1.3E+02 0.0028 27.0 6.0 48 391-441 91-138 (200)
60 cd02810 DHOD_DHPD_FMN Dihydroo 31.9 39 0.00084 33.0 2.8 37 351-388 163-199 (289)
61 cd04747 OYE_like_5_FMN Old yel 31.7 65 0.0014 33.7 4.5 87 267-374 141-245 (361)
62 cd04734 OYE_like_3_FMN Old yel 31.1 56 0.0012 33.5 3.8 86 268-374 139-238 (343)
63 cd02933 OYE_like_FMN Old yello 30.9 6.1E+02 0.013 26.1 12.2 102 292-407 167-283 (338)
64 PRK05722 glucose-6-phosphate 1 29.7 31 0.00068 37.7 1.9 22 175-202 292-313 (495)
65 PRK01759 glnD PII uridylyl-tra 28.7 84 0.0018 36.4 5.1 64 214-287 340-415 (854)
66 TIGR02491 NrdG anaerobic ribon 27.9 1.2E+02 0.0027 27.4 5.1 55 357-414 42-101 (154)
67 cd02911 arch_FMN Archeal FMN-b 27.8 63 0.0014 31.5 3.4 42 343-386 129-173 (233)
68 TIGR01362 KDO8P_synth 3-deoxy- 27.5 1.3E+02 0.0028 30.7 5.6 50 392-442 198-250 (258)
69 cd04735 OYE_like_4_FMN Old yel 27.5 61 0.0013 33.3 3.4 87 267-374 141-245 (353)
70 PRK12457 2-dehydro-3-deoxyphos 27.4 1.4E+02 0.0031 30.8 6.0 86 332-442 171-266 (281)
71 cd00468 HIT_like HIT family: H 27.1 1.5E+02 0.0033 23.1 4.9 55 123-178 17-75 (86)
72 PRK14315 glmM phosphoglucosami 26.8 84 0.0018 33.2 4.3 50 369-421 164-216 (448)
73 PRK13820 argininosuccinate syn 25.9 68 0.0015 34.2 3.5 96 276-385 153-256 (394)
74 PF01676 Metalloenzyme: Metall 25.6 80 0.0017 30.8 3.7 88 341-432 98-207 (252)
75 cd03089 PMM_PGM The phosphoman 25.6 1.5E+02 0.0033 31.1 6.0 9 414-422 167-175 (443)
76 PF05265 DUF723: Protein of un 25.4 50 0.0011 26.9 1.9 18 408-426 28-45 (60)
77 cd01822 Lysophospholipase_L1_l 24.8 2.6E+02 0.0056 24.3 6.4 49 389-441 82-130 (177)
78 PRK05198 2-dehydro-3-deoxyphos 24.5 1.8E+02 0.0039 29.8 6.0 50 392-442 206-258 (264)
79 cd00959 DeoC 2-deoxyribose-5-p 24.2 88 0.0019 29.5 3.6 31 341-372 162-195 (203)
80 PRK10885 cca multifunctional t 24.0 1.6E+02 0.0035 31.3 5.8 26 214-239 129-165 (409)
81 PF05598 DUF772: Transposase d 23.7 1.4E+02 0.0029 23.5 4.1 23 265-287 25-47 (77)
82 PRK14046 malate--CoA ligase su 23.5 1.9E+02 0.004 30.6 6.1 67 348-421 282-352 (392)
83 PRK13397 3-deoxy-7-phosphohept 23.4 94 0.002 31.3 3.8 44 126-187 14-58 (250)
84 TIGR01463 mtaA_cmuA methyltran 23.4 55 0.0012 32.8 2.2 36 392-427 177-212 (340)
85 cd02808 GltS_FMN Glutamate syn 23.3 92 0.002 32.7 3.9 67 341-408 203-281 (392)
86 TIGR02370 pyl_corrinoid methyl 23.3 2E+02 0.0044 27.2 5.8 54 355-415 116-173 (197)
87 TIGR02692 tRNA_CCA_actino tRNA 23.1 92 0.002 33.3 3.9 24 214-237 167-198 (466)
88 PF01713 Smr: Smr domain; Int 23.1 1.3E+02 0.0028 24.2 3.9 43 380-423 28-76 (83)
89 PRK12595 bifunctional 3-deoxy- 22.8 5.1E+02 0.011 27.3 9.1 38 152-204 132-169 (360)
90 PLN02210 UDP-glucosyl transfer 22.7 1.4E+02 0.0031 31.9 5.2 80 334-417 207-307 (456)
91 PF08203 RNA_polI_A14: Yeast R 22.6 50 0.0011 27.9 1.4 18 91-108 59-76 (76)
92 cd08229 STKc_Nek7 Catalytic do 22.6 2.5E+02 0.0055 25.6 6.2 22 265-286 108-129 (267)
93 PF10281 Ish1: Putative stress 22.4 78 0.0017 22.6 2.2 20 353-372 16-36 (38)
94 cd06619 PKc_MKK5 Catalytic dom 22.1 1.5E+02 0.0033 27.7 4.8 21 266-286 98-118 (279)
95 TIGR01942 pcnB poly(A) polymer 21.9 1.9E+02 0.0041 31.2 5.9 58 214-286 165-235 (410)
96 COG0537 Hit Diadenosine tetrap 21.7 1.4E+02 0.0031 26.9 4.3 62 134-202 44-109 (138)
97 PRK13298 tRNA CCA-pyrophosphor 21.6 2E+02 0.0044 31.1 6.0 24 360-383 316-339 (417)
98 cd01636 FIG FIG, FBPase/IMPase 21.3 42 0.00092 30.5 0.8 16 409-424 77-92 (184)
99 PRK10605 N-ethylmaleimide redu 20.8 1.4E+02 0.003 31.1 4.6 89 265-374 154-259 (362)
100 cd05805 MPG1_transferase GTP-m 20.8 1.4E+02 0.003 31.4 4.6 32 381-415 168-199 (441)
101 cd01011 nicotinamidase Nicotin 20.7 66 0.0014 30.1 2.0 39 373-416 7-48 (196)
102 TIGR00871 zwf glucose-6-phosph 20.3 89 0.0019 34.2 3.1 50 139-201 251-301 (482)
103 TIGR00140 hupD hydrogenase exp 20.2 2.7E+02 0.0058 24.3 5.6 45 360-406 74-128 (134)
104 cd04733 OYE_like_2_FMN Old yel 20.1 1.4E+02 0.003 30.4 4.2 92 266-376 145-248 (338)
105 KOG2544 Dihydropteroate syntha 20.1 1.1E+02 0.0024 34.2 3.7 76 258-383 258-334 (711)
No 1
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=100.00 E-value=3.1e-180 Score=1369.64 Aligned_cols=374 Identities=90% Similarity=1.417 Sum_probs=370.0
Q ss_pred CCCCccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcChhhHH
Q 013450 69 QKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIR 148 (443)
Q Consensus 69 ~~Wsp~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQGGDCAEsF~e~~~~~I~ 148 (443)
..|+|+|||++|++|||+|||+++|+.|+++|+++|||||++||++||++||+||+|+|||||||||||+|+||++++|+
T Consensus 18 ~~W~p~sWr~~pa~QqP~y~D~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~LA~va~G~AFlLQgGDCAE~F~~~~~~~ir 97 (474)
T PLN02291 18 KKWSPDSWRSKKALQLPEYPDQAELEEVLKTLEAFPPLVFAGEARSLEERLAEAAMGRAFLLQGGDCAESFKEFNANNIR 97 (474)
T ss_pred CCCChhhhhcCccccCCCCCCHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhcCCeEEEeCCchhhhhhhhCHHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChhHHHHHHHHHH
Q 013450 149 DTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSA 228 (443)
Q Consensus 149 ~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg~~f~~~aR~PDP~Rml~AY~~Sa 228 (443)
+|+++|+|||+||+|++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||+||+
T Consensus 98 ~k~~~llqMa~vL~~~~~~PVVkVGRiAGQyAKPRSs~~E~~dGv~LPsYRGD~VN~~e~t~~aR~PDP~Rll~aY~~Sa 177 (474)
T PLN02291 98 DTFRVLLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKDGVKLPSYRGDNINGDAFDEKSRRPDPQRMVRAYSQSA 177 (474)
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEecccccccCCCCCCCcccCCCEeccccCCccccCcCCCHhhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcccccccccccccccccCchhhHHHHHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccc
Q 013450 229 ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYE 308 (443)
Q Consensus 229 aTLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE 308 (443)
+|||+||+|..|||||||++++||++|+++++.+++|++++++|++||+||++||++.+...+++++||||||||||+||
T Consensus 178 atlnllRa~~~gg~adl~~~~~W~~~fv~~~~~~~~y~~la~~i~~al~fm~a~g~~~~~~~l~~~~~yTSHEaLlL~YE 257 (474)
T PLN02291 178 ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMAACGLTTDHPIMTTTEFWTSHECLLLPYE 257 (474)
T ss_pred HHHHHHHHHhcCCchhhccccccchhhhccCchhhHHHHHHHHHHHHHHHHHHcCCCccccccccCceeechHhhccchh
Confidence 99999999999999999999999999999999999999999999999999999999988556899999999999999999
Q ss_pred cccccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 013450 309 QSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM 388 (443)
Q Consensus 309 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm 388 (443)
+||||+|+.+|.|||||||||||||||||+|||||||||||+|||||||||+|+||||++||++|||+|+|||||||+||
T Consensus 258 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGPs~~pdel~~L~~~LnP~~epGRlTLI~Rm 337 (474)
T PLN02291 258 QALTREDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPEELVKLIEILNPQNKPGRLTIIVRM 337 (474)
T ss_pred hhhhccCCCCCCcccccccccccccccCCCCccHHHHHhcCCCCeeEEECCCCCHHHHHHHHHHhCCCCCCceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhhhhhhhc
Q 013450 389 GAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRVNTD 442 (443)
Q Consensus 389 Ga~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~ 442 (443)
||+||+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||+
T Consensus 338 Ga~kV~~~LP~Li~aV~~~G~~VvW~cDPMHGNT~~t~~G~KTR~f~~Il~Ev~ 391 (474)
T PLN02291 338 GAEKLRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPSGLKTRPFDAIRAEVR 391 (474)
T ss_pred chHHHHHHHHHHHHHHHHcCCceEEeecCCCCCceeCCCCccCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996
No 2
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=100.00 E-value=3.7e-180 Score=1363.43 Aligned_cols=371 Identities=61% Similarity=1.042 Sum_probs=368.3
Q ss_pred CCccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcChhhHHHH
Q 013450 71 WTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDT 150 (443)
Q Consensus 71 Wsp~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQGGDCAEsF~e~~~~~I~~k 150 (443)
|+|+|||++|++|||+|||+++|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|++|
T Consensus 1 w~p~sWr~~pa~QqP~y~D~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~La~va~G~aFlLQgGDCAE~F~~~~~~~i~~k 80 (443)
T TIGR01358 1 WSPQSWRSKPAAQQPTYPDAGALEAVLDTLRSLPPLVFAGEIRRLKRQLAQVAEGEAFLLQGGDCAESFKDCTADHIRNK 80 (443)
T ss_pred CCchhhhcCccccCCCCCCHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhCCCEEEEeCccccCchhhcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 013450 151 FRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAAT 230 (443)
Q Consensus 151 ~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg~~f~~~aR~PDP~Rml~AY~~SaaT 230 (443)
+++|+|||+||++++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||+||++|
T Consensus 81 ~~~llqMa~vl~~~~~~PVVkVGRiAGQyAKPRS~~~E~~~G~~LPsYRGD~VN~~e~t~~aR~PDP~Rll~aY~~saat 160 (443)
T TIGR01358 81 LRVLLQMAVVLTYGASLPVVKVGRIAGQYAKPRSAPTETRDGVTLPSYRGDIINGPAFTEAARVPDPRRLVRAYHQSAAT 160 (443)
T ss_pred HHHHHHHHHHHhhcCCCCeEEecccccccCCCCCCCcccCCCEeccccCCccccCcCCChhhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccccccccccccccccCchhhHHHHHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccc
Q 013450 231 LNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQS 310 (443)
Q Consensus 231 Ln~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~a 310 (443)
||+||+|.+|||||||++++||++|+++|+.+++|++++++|++||+||++||++.++ .+++++||||||||||+||+|
T Consensus 161 ln~lRa~~~gg~adl~~~~~W~~~f~~~~~~~~~y~~la~~i~~al~fm~a~g~~~~~-~l~~~~~~TSHEaLlL~YE~a 239 (443)
T TIGR01358 161 LNLVRALTTGGYADLHQVHYWNLEFVGYSPAGARYEKLASEIDEALRFMSACGLAPRY-NLQTVEFYTSHEALLLPYEEA 239 (443)
T ss_pred HHHHHHHhcCCchhhcccchhhhhhhhcCchhhHHHHHHHHHHHHHHHHHHcCCCccc-ccCcCceeechHhhccchhhh
Confidence 9999999999999999999999999999999999999999999999999999999886 689999999999999999999
Q ss_pred cccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccCh
Q 013450 311 LTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGA 390 (443)
Q Consensus 311 ltR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa 390 (443)
|||.|+.+|.|||||||||||||||||+|||||||||||+|||||||||+|+||||++||++|||+|+|||||||+||||
T Consensus 240 ltR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~p~~l~~L~~~LnP~~epGRlTLI~RmGa 319 (443)
T TIGR01358 240 LTRVDSRSGGWFDLSAHMLWIGERTRQLDGAHVEFLRGVRNPIGIKVGPSMTPDELLRLIERLNPENEPGRLTLISRMGA 319 (443)
T ss_pred hhcccCCCCCcccccccccccccccCCCCchHHHHHhcCCCCeeEEECCCCCHHHHHHHHHHhCCCCCCceEEEEeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhhhhhhhc
Q 013450 391 ENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRVNTD 442 (443)
Q Consensus 391 ~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~ 442 (443)
+||+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||+
T Consensus 320 ~kV~~~LP~li~aV~~~G~~VvW~cDPMHGNT~~t~~G~KTR~f~~Il~Ev~ 371 (443)
T TIGR01358 320 DKIADKLPPLLRAVKAAGRRVVWVCDPMHGNTEEAASGYKTRRFDDIRSEVK 371 (443)
T ss_pred hHHHHhHHHHHHHHHHcCCceEEeecCCCCCceeCCCCccCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999996
No 3
>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A.
Probab=100.00 E-value=4.5e-177 Score=1339.66 Aligned_cols=373 Identities=60% Similarity=1.044 Sum_probs=305.8
Q ss_pred CCCccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcChhhHHH
Q 013450 70 KWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRD 149 (443)
Q Consensus 70 ~Wsp~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQGGDCAEsF~e~~~~~I~~ 149 (443)
+|+|+|||++|++|||+|||+.+|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|++
T Consensus 1 ~W~p~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~~~Ei~~Lr~~La~va~G~AFlLQgGDCAEsF~e~~~~~I~~ 80 (439)
T PF01474_consen 1 EWSPSSWRSKPAAQQPEYPDPDALAEVLAKLASLPPLVFAGEIRRLREQLADVARGEAFLLQGGDCAESFAECTADHIRD 80 (439)
T ss_dssp ---HHHHHTS--SS---S-HHHHH-HHHHHHTTS--SS-HHHHHHHHHHHHHHHTTSSEEEEEEESS--STT-SHHHHHH
T ss_pred CCChhhHHhCCcccCCCCcCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHcCCeEEEeCCCcccChhhcChHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 013450 150 TFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAA 229 (443)
Q Consensus 150 k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg~~f~~~aR~PDP~Rml~AY~~Saa 229 (443)
|+++|+|||.||++++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||++|++
T Consensus 81 k~~~Llqma~vL~~~~~~PVVrVGRiAGQyAKPRS~~~E~vdG~~LPsyRGD~VN~~~~~~~aR~PDP~RlL~aY~~Saa 160 (439)
T PF01474_consen 81 KFKLLLQMALVLTYGAGKPVVRVGRIAGQYAKPRSSPTETVDGVELPSYRGDIVNGPEFTPEARRPDPQRLLRAYFHSAA 160 (439)
T ss_dssp HHHHHHHHHHHHHHHHTS-EEEEEEBSS------S-SB----TTSSB----TTTS-SSSSHHHHS--THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEechhhhcccCCCCCCccCCCCccCcccccccccCCCCChhhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcccccccccccccccccCchhhHHHHHHHHHHHHhhhHHhhCCCCC-CCCCCccceeecccccccccc
Q 013450 230 TLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVD-HPIMTTTEFWTSHECLLLPYE 308 (443)
Q Consensus 230 TLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~-~~~~~~~~~~TSHEaLLL~YE 308 (443)
|||+||+|++|||||||++++||++|+++|+.+++|++++++|++||+||++||++.+ ++.+++++||||||||||+||
T Consensus 161 tLn~lRa~~~~G~Adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~g~~~~~~~~~~~~~~~tSHEaLlL~YE 240 (439)
T PF01474_consen 161 TLNLLRAFASGGFADLHHVHQWNLDFVRNSPLGERYEELADEIDDALRFMRACGVDSDSSPALRTVDFYTSHEALLLDYE 240 (439)
T ss_dssp HHHHHHHHHTSCCG-HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTT-----GGGST---EEEEEE---HHHH
T ss_pred HHHHHHHHhcCChhhhcccccchhhhhcCChhhhHHHHHHHHHHHHHHHHHHcCCCccccccccccccccchHHhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999976 677899999999999999999
Q ss_pred cccccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 013450 309 QSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM 388 (443)
Q Consensus 309 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm 388 (443)
+||||.|+.+|.||||||||+||||||||+|||||||||||+|||||||||+|+|+||++||++|||+|+|||||||+||
T Consensus 241 ~altR~d~~~g~~y~~SaH~~WIGeRTRq~dgAHve~~~gi~NPigvKvGP~~~~~~l~~l~~~LnP~~~pGRltlI~Rm 320 (439)
T PF01474_consen 241 EALTRQDSDTGRWYNTSAHFLWIGERTRQLDGAHVEFLRGIANPIGVKVGPSMTPEELVELCDRLNPDNEPGRLTLITRM 320 (439)
T ss_dssp HHTEEEESSSEEEEETT-SEEEE-TTT--TTSHHHHHHHHB-S-EEEEE-TT--HHHHHHHHHHHSTT--TTSEEEEE--
T ss_pred hhhccccCCCCCccccccceeeecccccCCchhHHHHHhhccCccceeeCCCCCHHHHHHHHHHhCCCCCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhhhhhhhc
Q 013450 389 GAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRVNTD 442 (443)
Q Consensus 389 Ga~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~ 442 (443)
|+++|+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||+
T Consensus 321 Ga~~v~~~LP~li~aV~~~g~~vvW~cDPMHGNT~~~~~G~KTR~f~~i~~Ev~ 374 (439)
T PF01474_consen 321 GADKVRERLPPLIEAVQAAGHPVVWSCDPMHGNTITTSSGYKTRHFDDILAEVR 374 (439)
T ss_dssp -TTTHHHHHHHHHHHHHTTT---EEEE-TSTTSEEE-TTSSEEEBHHHHHHHHH
T ss_pred CcHHHHHHhHHHHHHHHHCCCceEEeccCCCCCceECCCCccCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999986
No 4
>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-173 Score=1283.33 Aligned_cols=373 Identities=60% Similarity=1.028 Sum_probs=369.6
Q ss_pred CCCCccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcChhhHH
Q 013450 69 QKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIR 148 (443)
Q Consensus 69 ~~Wsp~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQGGDCAEsF~e~~~~~I~ 148 (443)
..|+|.||++||++|||+|||..+|..|...|+++|||||++|+++||++||+||.|+|||||||||||||+++++++||
T Consensus 3 ~~w~p~swr~kpi~Q~p~ypd~~~l~~v~a~L~~~PplvfAgEar~Lk~~LA~Va~g~AfLLQgGDCAEsf~~~~a~~Ir 82 (445)
T COG3200 3 TTWLPNSWRAKPIQQQPTYPDAQALARVEARLRSYPPLVFAGEARRLQEQLARVAKGEAFLLQGGDCAESFADHGADNIR 82 (445)
T ss_pred cccCcchhhcCchhcCCCCCCHHHHHHHHHHHhcCCCeeecHHHHHHHHHHHHHhcCceEEEeCCcHHHHHHhcccHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChhHHHHHHHHHH
Q 013450 149 DTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSA 228 (443)
Q Consensus 149 ~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg~~f~~~aR~PDP~Rml~AY~~Sa 228 (443)
++||+|+|||+||+|++++|||||||||||||||||+++|+.+|++|||||||||||.||++++|.|||+||++||.+|+
T Consensus 83 d~frvllqMAvVLtfa~~~PVvKVgRIAGQfAKPRSs~~e~~g~vtLpsYRGDiiNG~e~~~~~R~pdP~R~l~aY~qsa 162 (445)
T COG3200 83 DNFRVLLQMAVVLTFAGSRPVVKVGRIAGQFAKPRSSDHEQLGGVTLPSYRGDIINGIEFDAEAREPDPERLLKAYAQSA 162 (445)
T ss_pred HHHHHHHHHHHHHHhccCCceEEeeeecccccCCCCCchhccCCeeccccccccccCccCChhhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcccccccccccccccccCchhhHHHHHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccc
Q 013450 229 ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYE 308 (443)
Q Consensus 229 aTLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE 308 (443)
+|||+||+|++||||||+.+|+||++||++|++++||+.++++|+++|+||++||++.+ |.++.++||||||||||+||
T Consensus 163 AtlNLlRafa~gG~A~L~~vh~W~l~Fv~~sp~~~rY~~la~~I~~~l~FM~A~Gv~~~-~~lre~~~ytSHEaLLL~YE 241 (445)
T COG3200 163 ATLNLLRAFASGGLADLENVHRWNLGFVKNSPQGARYEALADRISETLAFMRACGVTND-PSLRETEFYTSHEALLLDYE 241 (445)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCC-cccccccchhhhHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999984 77899999999999999999
Q ss_pred cccccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 013450 309 QSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM 388 (443)
Q Consensus 309 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm 388 (443)
+||||.|+.+|.||+|||||+||||||||+|||||||+|||.|||||||||+|+||+|++||++|||+|+|||||||+||
T Consensus 242 eam~R~ds~s~~~Yd~SaHmlWIGeRTRq~D~AHVe~~rgv~NPig~K~GP~~~~d~ll~l~d~LnP~nepGRLtLi~Rm 321 (445)
T COG3200 242 EAMLRLDSTSGQWYDTSAHMLWIGERTRQPDGAHVEFLRGVKNPIGVKIGPSMTPDELLELIDRLNPHNEPGRLTLIARM 321 (445)
T ss_pred HHHhhhccCCCceeccccceeeecccccCCChhHHHHHHhcCCccccccCCCCCHHHHHHHHHhcCCCCCCceEEeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhhhhhhhc
Q 013450 389 GAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRVNTD 442 (443)
Q Consensus 389 Ga~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~ 442 (443)
|++||.++||+||+||+++||+|||+||||||||+++++|||||+||.|++||+
T Consensus 322 G~dKV~d~LP~li~av~~eG~~VvWs~DPMHGNTi~a~~gyKTR~fd~Il~EV~ 375 (445)
T COG3200 322 GADKVGDRLPPLVEAVEAEGHQVIWSSDPMHGNTIKASTGYKTRPFDRILDEVQ 375 (445)
T ss_pred cchHHhhhhhHHHHHHHHcCCceEEecCCCCCceeecCCCCccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996
No 5
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=94.55 E-value=0.018 Score=57.29 Aligned_cols=97 Identities=20% Similarity=0.212 Sum_probs=73.2
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCC-CCC--cEEEEeccCh--hHHHhhChHH
Q 013450 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQN-KPG--RITIITRMGA--ENMRVKLPHL 400 (443)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~-~pG--RlTLI~RmGa--~~v~~~LP~L 400 (443)
.-++|||-||=+ +-.|.+.+.+..-||++|=|..++++|.+.-.+.+-=.. ..| =--.|.|+|. .+...-+-.+
T Consensus 108 vd~lqIgAr~~~-n~~ll~~as~~~~pV~~K~g~~~ai~~~~~Aae~~~~~G~n~~~~l~erglr~g~~~n~~~~di~~~ 186 (270)
T PF00793_consen 108 VDWLQIGARLME-NQDLLEAASGTGKPVGFKNGTFAAIDEWLAAAEKHLFLGINSGNILCERGLRGGYGPNYNVLDIAAV 186 (270)
T ss_dssp ESEEEE-GGGTT-CHHHHHHHHCTSSEEEEEE-TTSHGGGHHHHHHHHHHTTECSSEEEEEEEEEESSSSSSEEHHTTHH
T ss_pred CcEEEECcchhc-CHHHHHHhccCCCeEEeccCCccCHHHHHHHHhhhhhhcCCCCCeeeeeeeeccccccccchhHHHH
Confidence 449999999976 789999999999999999999999999998887763222 122 1345788887 5555556667
Q ss_pred HHHHHHCCCceEEEcCCCCCCcccC
Q 013450 401 IRAVRRSGQIVTWVSDPMHGNTIKA 425 (443)
Q Consensus 401 I~AV~~aG~~ViW~cDPMHGNT~~~ 425 (443)
...-+.++.|| ++||=|+|..+.
T Consensus 187 ~~~~~~~~lpV--ivD~SH~~~~~~ 209 (270)
T PF00793_consen 187 PIMKKKTHLPV--IVDPSHANSRKD 209 (270)
T ss_dssp HHHHHHTSSEE--EEEHHHHTTTCG
T ss_pred HHHHHhcCCCE--EECchhhhcccc
Confidence 77777776766 589999998765
No 6
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=93.83 E-value=0.14 Score=53.24 Aligned_cols=99 Identities=20% Similarity=0.299 Sum_probs=75.5
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHH-hCCCC-----CCCcE-----------EEEecc
Q 013450 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEI-LNPQN-----KPGRI-----------TIITRM 388 (443)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~-LnP~~-----~pGRl-----------TLI~Rm 388 (443)
-.|.+||-||-+ +--|.|+++|+.-|||+|=|...+.++.+.-+.. =+|+. +-|+. -||-|-
T Consensus 158 vs~~aIGARt~e-sq~hre~aSgl~~PVgfKngt~g~i~~al~Ai~aa~~~H~fl~~~~~G~~~iv~t~GN~~~hliLRG 236 (353)
T PRK12755 158 ISWGAIGARTTE-SQTHREMASGLSMPVGFKNGTDGSLKVAINAIRAAAQPHRFLGINQEGQVALLETRGNPDGHVILRG 236 (353)
T ss_pred hhheeeccchhc-CHHHHHHhcCCCCeeEecCCCCCCHHHHHHHHHHHhCCCeeeeeCCCCcEEEEECCCCCCEEEEeCC
Confidence 447889999987 7999999999999999999999999998877632 24443 33333 455665
Q ss_pred Ch---hHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccC
Q 013450 389 GA---ENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKA 425 (443)
Q Consensus 389 Ga---~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~ 425 (443)
|. .--++.+=.....++++|.+.-=|.|+=|||..+.
T Consensus 237 g~~~pNy~~~~i~~a~~~l~k~~l~~~vmVD~SH~Ns~K~ 276 (353)
T PRK12755 237 GKKGPNYDAASVAACEAQLEKAGLRPRLMIDCSHANSGKD 276 (353)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCcEEecCCccccccc
Confidence 52 12335556667778899999999999999998764
No 7
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=93.82 E-value=0.14 Score=53.28 Aligned_cols=97 Identities=24% Similarity=0.322 Sum_probs=69.7
Q ss_pred ceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHH-HHhCCCC-----CCCc-----------EEEEeccCh
Q 013450 328 FLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLI-EILNPQN-----KPGR-----------ITIITRMGA 390 (443)
Q Consensus 328 ~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~-~~LnP~~-----~pGR-----------lTLI~RmGa 390 (443)
|.+||-||-+= --|-|+.+|+.-|||.|=|...+.++.+.-+ ..=+|+. .-|+ .-||-|-|.
T Consensus 154 w~aIGARt~es-q~hRelaSgl~~PVgfKngt~g~i~~al~Ai~aA~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~ 232 (344)
T TIGR00034 154 WGAIGARTTES-QVHRELASGLSCPVGFKNGTDGNLQVAIDAIRAAAAPHYFLSVTKDGQMAIVQTSGNPDGHIILRGGK 232 (344)
T ss_pred hccccCccccC-HHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHhCCceeeecCCCCcEEEEECCCCCCEEEEecCCC
Confidence 56999999663 5899999999999999999999999988654 3334443 2333 456667552
Q ss_pred h--HHHhhChHHHHHHHHCCCceEEEcCCCCCCcccC
Q 013450 391 E--NMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKA 425 (443)
Q Consensus 391 ~--~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~ 425 (443)
. --+..+-......+.+|.+.--|+||=|||..+.
T Consensus 233 ~pNy~~~di~~~~~~l~~~~lp~~vmVD~SH~ns~k~ 269 (344)
T TIGR00034 233 KPNYSAADVAAAKKQLEKAGLPPHLMIDFSHGNSNKD 269 (344)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCeEEEeCCCcccccc
Confidence 1 1112333444555789999888999999998765
No 8
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=93.52 E-value=0.1 Score=54.25 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=77.5
Q ss_pred cccCCCCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHH-HHhCCCCCCC-----c-----------EE
Q 013450 321 YYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLI-EILNPQNKPG-----R-----------IT 383 (443)
Q Consensus 321 ~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~-~~LnP~~~pG-----R-----------lT 383 (443)
|+.-=--|+|||-||-+ +-.|.+.++|+.-|||+|=|...+.++.+.-+ ..=+|+.-.| + .-
T Consensus 152 y~~dlvs~~~IGARt~e-sq~hr~~asg~~~PVg~Kng~~g~i~~~l~Ai~aa~~~H~fl~~~~~G~~~~i~t~GN~~~h 230 (349)
T PRK09261 152 YIADLISWGAIGARTTE-SQVHRELASGLSCPVGFKNGTDGNIKVAIDAIIAASAPHHFLGITKDGRSAIVSTTGNPDCH 230 (349)
T ss_pred HHHhhcceeeeccchhc-CHHHHHHhcCCCCeeEecCCCCCCHHHHHhHHHHHhCCceeeecCCCCcEEEEECCCCCCEE
Confidence 33333559999999988 69999999999999999999999999977765 2234554332 3 44
Q ss_pred EEeccCh---hHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccC
Q 013450 384 IITRMGA---ENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKA 425 (443)
Q Consensus 384 LI~RmGa---~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~ 425 (443)
||-|-|. .--++.+=.....+++.|.+.-=|.||=|||..+.
T Consensus 231 lilRGg~~~pNy~~~~i~~~~~~l~k~~l~~~v~VD~SH~ns~k~ 275 (349)
T PRK09261 231 VILRGGNKGPNYDAESVAEAKERLEKAGLPPRIMIDCSHANSGKD 275 (349)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHcCCCCCEEEECCCcccCcc
Confidence 6667552 11334555667778888998888999999998765
No 9
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.85 E-value=0.52 Score=46.98 Aligned_cols=91 Identities=15% Similarity=0.215 Sum_probs=65.5
Q ss_pred CceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec----c-ChhHHHhhChHHH
Q 013450 327 HFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR----M-GAENMRVKLPHLI 401 (443)
Q Consensus 327 H~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R----m-Ga~~v~~~LP~LI 401 (443)
-++|||=|+=+ +-.+++.+.+..-||++|=|..++++|++.-++.+-=... ..+.|+-| + +...-.-.|-. |
T Consensus 112 d~~kIga~~~~-n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn-~~i~L~~rG~~t~~~Y~~~~vdl~~-i 188 (266)
T PRK13398 112 DMLQIGSRNMQ-NFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGN-ENVVLCERGIRTFETYTRNTLDLAA-V 188 (266)
T ss_pred CEEEECccccc-CHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCC-CeEEEEECCCCCCCCCCHHHHHHHH-H
Confidence 49999999865 4679999999999999999999999999999999842222 26999999 3 33322222222 3
Q ss_pred HHHH-HCCCceEEEcCCCCCCc
Q 013450 402 RAVR-RSGQIVTWVSDPMHGNT 422 (443)
Q Consensus 402 ~AV~-~aG~~ViW~cDPMHGNT 422 (443)
...+ ..+.||+ +||=|+|.
T Consensus 189 ~~lk~~~~~pV~--~D~sHs~G 208 (266)
T PRK13398 189 AVIKELSHLPII--VDPSHATG 208 (266)
T ss_pred HHHHhccCCCEE--EeCCCccc
Confidence 3333 4477765 56669986
No 10
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=91.88 E-value=0.42 Score=48.79 Aligned_cols=85 Identities=24% Similarity=0.379 Sum_probs=58.4
Q ss_pred CCCchhHHHhhhc--cCCccee--eCCCCCHHHHHHHHHHhCCCCCCCc-EEEEeccChhHHHhhChHHHHHHHHCCCce
Q 013450 337 QLDGAHVEFLKGV--ANPLGIK--VSDKMDPNELVKLIEILNPQNKPGR-ITIITRMGAENMRVKLPHLIRAVRRSGQIV 411 (443)
Q Consensus 337 qlDgAHVeflrgI--~NPIGvK--vGP~~~p~elv~L~~~LnP~~~pGR-lTLI~RmGa~~v~~~LP~LI~AV~~aG~~V 411 (443)
|+=|--|+.+-.| +|=.|-+ =|+.++++||.+|++-|-=+|.-+= -.|-.=.|.-..-+..-.+|+++++..-++
T Consensus 34 QllGwdVD~insVqFSNHtGY~~~kG~~~~~~eL~dL~egl~~nn~~~Y~~vLTGY~~n~~~l~~i~~iv~~lk~~np~~ 113 (308)
T KOG2599|consen 34 QLLGWDVDVINSVQFSNHTGYAHVKGQVLNEEELEDLYEGLLLNNLNKYDAVLTGYLPNVSFLQKIADIVKKLKKKNPNL 113 (308)
T ss_pred hhhccccccccceeeccccCCccccccccCHHHHHHHHHHHhhccccccceeeeeccCChhHHHHHHHHHHHHHhcCCCe
Confidence 5555555555443 3555533 3999999999999999944432211 122233455555567788999999999999
Q ss_pred EEEcCCCCCC
Q 013450 412 TWVSDPMHGN 421 (443)
Q Consensus 412 iW~cDPMHGN 421 (443)
+|+|||.=|.
T Consensus 114 ~wv~DPVmGD 123 (308)
T KOG2599|consen 114 TWVCDPVMGD 123 (308)
T ss_pred EEEeCccccC
Confidence 9999999886
No 11
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=89.55 E-value=0.88 Score=47.44 Aligned_cols=91 Identities=19% Similarity=0.227 Sum_probs=66.9
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec-----c-ChhHHHhhChH
Q 013450 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR-----M-GAENMRVKLPH 399 (443)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R-----m-Ga~~v~~~LP~ 399 (443)
.-++|||-|.=| +-..++.+....-||-+|=|.+++++|+..-++.+--... .+|.|.-| - +.-+-.--|-.
T Consensus 185 ~d~lqIga~~~~-n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn-~~viL~erG~rtf~s~y~~~~~dl~a 262 (352)
T PRK13396 185 ADVIQVGARNMQ-NFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILAAGN-PNVILCERGIRTFDRQYTRNTLDLSV 262 (352)
T ss_pred CCeEEECccccc-CHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CeEEEEecCCccCcCCCCCCCcCHHH
Confidence 459999999876 5778888889999999999999999999999999953333 37999988 3 43322222333
Q ss_pred HHHHHHH-CCCceEEEcCCCCCC
Q 013450 400 LIRAVRR-SGQIVTWVSDPMHGN 421 (443)
Q Consensus 400 LI~AV~~-aG~~ViW~cDPMHGN 421 (443)
|..+++ .+.|| +|||=|+=
T Consensus 263 -i~~lk~~~~lPV--i~DpsH~~ 282 (352)
T PRK13396 263 -IPVLRSLTHLPI--MIDPSHGT 282 (352)
T ss_pred -HHHHHHhhCCCE--EECCcccC
Confidence 333444 47776 59999953
No 12
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=87.53 E-value=2.7 Score=43.52 Aligned_cols=93 Identities=16% Similarity=0.147 Sum_probs=69.6
Q ss_pred CceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc-----ChhHHHhhChHHH
Q 013450 327 HFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM-----GAENMRVKLPHLI 401 (443)
Q Consensus 327 H~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm-----Ga~~v~~~LP~LI 401 (443)
-++|||-|+=| +-.|++.+.+..-||.+|=|..++++|++.-++.+--... .++.|+-|- ++.+-.--|-.+.
T Consensus 178 d~lqIgAr~~~-N~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN-~~viL~erG~~tf~~~~~~~ldl~ai~ 255 (335)
T PRK08673 178 DILQIGARNMQ-NFDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEYILAEGN-PNVILCERGIRTFETATRNTLDLSAVP 255 (335)
T ss_pred CeEEECccccc-CHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC-CeEEEEECCCCCCCCcChhhhhHHHHH
Confidence 48999999876 6789999999999999999999999999999999943322 269999881 3433333344444
Q ss_pred HHHHHCCCceEEEcCCCCCCcc
Q 013450 402 RAVRRSGQIVTWVSDPMHGNTI 423 (443)
Q Consensus 402 ~AV~~aG~~ViW~cDPMHGNT~ 423 (443)
..-+..+.||+ .||=|++..
T Consensus 256 ~lk~~~~lPVi--~d~sH~~G~ 275 (335)
T PRK08673 256 VIKKLTHLPVI--VDPSHATGK 275 (335)
T ss_pred HHHHhcCCCEE--EeCCCCCcc
Confidence 33344677774 677799765
No 13
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=87.53 E-value=1.5 Score=44.74 Aligned_cols=65 Identities=17% Similarity=0.334 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHhCC--CCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCc
Q 013450 358 SDKMDPNELVKLIEILNP--QNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNT 422 (443)
Q Consensus 358 GP~~~p~elv~L~~~LnP--~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT 422 (443)
|..+.+|++.++++-|+= .+.-=...|..=||...--+.+=.+|++||++.=.+.|+|||.=|..
T Consensus 50 g~v~~~e~l~~~l~~l~~~~~~~~~davltGYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~ 116 (281)
T COG2240 50 GIVMPPEQLADLLNGLEAIDKLGECDAVLTGYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDP 116 (281)
T ss_pred CcCCCHHHHHHHHHHHHhcccccccCEEEEccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCC
Confidence 456789999999999964 44455678888899888778899999999999888999999988864
No 14
>PRK05756 pyridoxamine kinase; Validated
Probab=86.65 E-value=1.7 Score=42.37 Aligned_cols=65 Identities=14% Similarity=0.263 Sum_probs=51.4
Q ss_pred eCCCCCHHHHHHHHHHhCCCCC--CCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCC
Q 013450 357 VSDKMDPNELVKLIEILNPQNK--PGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGN 421 (443)
Q Consensus 357 vGP~~~p~elv~L~~~LnP~~~--pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGN 421 (443)
.|+.++++++..+++.+.=.+. +....++.=+|.....+.+=.+|+.+++.|..++|+|||.=|.
T Consensus 50 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d 116 (286)
T PRK05756 50 TGCVMPPSHLTEIVQGIADIGWLGECDAVLSGYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGD 116 (286)
T ss_pred cCeeCCHHHHHHHHHHHHhcCccccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCcccc
Confidence 5778888999999887732222 4557777777888888889999999999888899999998554
No 15
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=85.55 E-value=1.8 Score=44.30 Aligned_cols=87 Identities=16% Similarity=0.247 Sum_probs=63.2
Q ss_pred CCceeeccccCCCCchhHHHh---hhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChH
Q 013450 326 AHFLWVGERTRQLDGAHVEFL---KGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR---MGAENMRVKLPH 399 (443)
Q Consensus 326 aH~lWIGeRTRqlDgAHVefl---rgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R---mGa~~v~~~LP~ 399 (443)
..++|||-|.=| --++| .+...||=||=|..++|+|.+-.++.+.-...+ +|.|+-| ||..+.---+-.
T Consensus 107 ~DilQIgAr~~r----qtdLL~a~~~tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~-~viLcERG~tFgy~~lv~D~r~ 181 (290)
T PLN03033 107 ADIIQIPAFLCR----QTDLLVAAAKTGKIINIKKGQFCAPSVMRNSAEKVRLAGNP-NVMVCERGTMFGYNDLIVDPRN 181 (290)
T ss_pred CcEEeeCcHHHH----HHHHHHHHHccCCeEEeCCCCCCCHHHHHHHHHHHHHcCCC-cEEEEeCCCCcCCCCcccchhh
Confidence 479999999864 35666 667789999999999999999999999655443 6777766 566533211221
Q ss_pred HHHHHHHCCCceEEEcCCCCC
Q 013450 400 LIRAVRRSGQIVTWVSDPMHG 420 (443)
Q Consensus 400 LI~AV~~aG~~ViW~cDPMHG 420 (443)
|-.++..+.||| |||=|+
T Consensus 182 -ip~mk~~~lPVI--~DpSHs 199 (290)
T PLN03033 182 -LEWMREANCPVV--ADITHS 199 (290)
T ss_pred -hHHHHhcCCCEE--EeCCcc
Confidence 123356899995 899994
No 16
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=85.39 E-value=2.1 Score=41.65 Aligned_cols=62 Identities=18% Similarity=0.342 Sum_probs=51.2
Q ss_pred eCCCCCHHHHHHHHHHh--CCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCC
Q 013450 357 VSDKMDPNELVKLIEIL--NPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPM 418 (443)
Q Consensus 357 vGP~~~p~elv~L~~~L--nP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPM 418 (443)
.|+.++++++.++++.+ .-.-.+....++.=++.....+.+=.+++..++.|..++|+|||-
T Consensus 50 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv 113 (286)
T TIGR00687 50 TGQVLPPDELTELVDGLAAINKLNQCDAVLSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPV 113 (286)
T ss_pred cCeECCHHHHHHHHHHHHhcCccccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCe
Confidence 58889999999999998 222236677788888888878888899999999888899999993
No 17
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=81.05 E-value=4.9 Score=42.28 Aligned_cols=97 Identities=23% Similarity=0.283 Sum_probs=72.5
Q ss_pred ceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHh-CCCC-----CCCcEE-----------EEeccCh
Q 013450 328 FLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEIL-NPQN-----KPGRIT-----------IITRMGA 390 (443)
Q Consensus 328 ~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~L-nP~~-----~pGRlT-----------LI~RmGa 390 (443)
|.+||-||-+ .--|-++.+|+.-|||+|=|...+.+..+.-+..- +|+. .-|+.. +|-|=|.
T Consensus 159 w~aIGARt~e-sq~hrelaSgls~PVgfKngt~g~i~~AidAi~aa~~pH~Fl~i~~~G~~aiv~T~GN~~~HvILRGg~ 237 (356)
T PRK12822 159 WGAIGARTTE-SQVHRQLASALPCPVGFKNGTDGNIRIAIDAILAARSPHLVTVPGLTGCISTLLSDGNPHGHIILRGGR 237 (356)
T ss_pred hhhhccchhc-CHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHcCCCeEEecCCCCcEEEEEcCCCCCceEEEeCCC
Confidence 4599999976 56899999999999999999999999887665543 6774 455553 4556441
Q ss_pred h--HHHhhChHHHHHHHHCCCceEEEcCCCCCCcccC
Q 013450 391 E--NMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKA 425 (443)
Q Consensus 391 ~--~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~ 425 (443)
. --.+.+-...+..+++|.+.--|.|==|||..|-
T Consensus 238 ~PNY~~~~v~~a~~~l~~~~l~~~vmVDcSH~NS~K~ 274 (356)
T PRK12822 238 EPNYGLSDVTKASKLLHDEGLNHRLIIDCSHGNSQKV 274 (356)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCcEEEECCCccCCCC
Confidence 0 1122333456778889999999999999998765
No 18
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=80.16 E-value=4.5 Score=40.49 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=65.8
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc--ChhHHHhhCh--HHH
Q 013450 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM--GAENMRVKLP--HLI 401 (443)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm--Ga~~v~~~LP--~LI 401 (443)
.-++|||-|+=+ +-..++.+.+..-||-||=|..++++|+...++.+--... .+|.|+-|. |...--+... .-|
T Consensus 99 vdilqIgs~~~~-n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn-~~i~L~eRg~~~Y~~~~~n~~dl~ai 176 (250)
T PRK13397 99 LDVIQVGARNMQ-NFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGK-SNIILCERGVRGYDVETRNMLDIMAV 176 (250)
T ss_pred CCEEEECccccc-CHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CeEEEEccccCCCCCccccccCHHHH
Confidence 349999999866 4668888888899999999999999999999999953333 379999886 4433211011 223
Q ss_pred HHHHH-CCCceEEEcCCCCC
Q 013450 402 RAVRR-SGQIVTWVSDPMHG 420 (443)
Q Consensus 402 ~AV~~-aG~~ViW~cDPMHG 420 (443)
..+++ .+.||+ +||=|.
T Consensus 177 ~~lk~~~~lPVi--vd~SHs 194 (250)
T PRK13397 177 PIIQQKTDLPII--VDVSHS 194 (250)
T ss_pred HHHHHHhCCCeE--ECCCCC
Confidence 44444 777875 688885
No 19
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=80.07 E-value=4 Score=41.34 Aligned_cols=87 Identities=17% Similarity=0.290 Sum_probs=60.8
Q ss_pred CCceeeccccCCCCchhHHHhh---hccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChH
Q 013450 326 AHFLWVGERTRQLDGAHVEFLK---GVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR---MGAENMRVKLPH 399 (443)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflr---gI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R---mGa~~v~~~LP~ 399 (443)
..++|||-|.=|= .++|+ ....||=||=|..++|+|.+--++.+.-...+ +|.|+-| ||..+.---+-
T Consensus 101 ~DilQIgArn~rn----~~LL~a~g~t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~-~vilcERG~tf~y~r~~~D~~- 174 (264)
T PRK05198 101 VDVLQIPAFLCRQ----TDLLVAAAKTGKVVNIKKGQFLAPWDMKNVVDKVREAGND-KIILCERGTSFGYNNLVVDMR- 174 (264)
T ss_pred CcEEEECchhcch----HHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCC-eEEEEeCCCCcCCCCeeechh-
Confidence 6799999987442 35555 45789999999999999999999998554443 6777766 45543211111
Q ss_pred HHHHHHHCCCceEEEcCCCCC
Q 013450 400 LIRAVRRSGQIVTWVSDPMHG 420 (443)
Q Consensus 400 LI~AV~~aG~~ViW~cDPMHG 420 (443)
-|-.+++.+.||| +||=|+
T Consensus 175 ~vp~~k~~~lPVi--~DpSHs 193 (264)
T PRK05198 175 GLPIMRETGAPVI--FDATHS 193 (264)
T ss_pred hhHHHhhCCCCEE--EeCCcc
Confidence 1234556788885 899996
No 20
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=79.20 E-value=4.7 Score=40.71 Aligned_cols=87 Identities=16% Similarity=0.268 Sum_probs=59.6
Q ss_pred CCceeeccccCCCCchhHHHhhh---ccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChH
Q 013450 326 AHFLWVGERTRQLDGAHVEFLKG---VANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR---MGAENMRVKLPH 399 (443)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrg---I~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R---mGa~~v~~~LP~ 399 (443)
..++|||-|.=|= .++|+- ..-||=||=|..++|+|.+--++.+.-...+ +|.|+-| ||..+.---+-.
T Consensus 93 vDilQIgArn~rn----~~LL~a~g~t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~-~viLcERG~tf~y~r~~~D~~~ 167 (258)
T TIGR01362 93 VDIIQIPAFLCRQ----TDLLVAAAKTGRIVNVKKGQFLSPWDMKNVVEKVLSTGNK-NILLCERGTSFGYNNLVVDMRS 167 (258)
T ss_pred CcEEEeCchhcch----HHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCC-cEEEEeCCCCcCCCCcccchhh
Confidence 5699999986442 355554 4589999999999999999999998544443 6777655 555432111211
Q ss_pred HHHHHHHCCCceEEEcCCCCC
Q 013450 400 LIRAVRRSGQIVTWVSDPMHG 420 (443)
Q Consensus 400 LI~AV~~aG~~ViW~cDPMHG 420 (443)
|-.+|+.+.||| +||=|+
T Consensus 168 -ip~~k~~~~PVi--~DpSHs 185 (258)
T TIGR01362 168 -LPIMRELGCPVI--FDATHS 185 (258)
T ss_pred -hHHHHhcCCCEE--EeCCcc
Confidence 223456688885 899996
No 21
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=79.06 E-value=6.2 Score=41.46 Aligned_cols=95 Identities=24% Similarity=0.297 Sum_probs=69.9
Q ss_pred eeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHh-CCCC-----CCCcEE-----------EEeccCh--
Q 013450 330 WVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEIL-NPQN-----KPGRIT-----------IITRMGA-- 390 (443)
Q Consensus 330 WIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~L-nP~~-----~pGRlT-----------LI~RmGa-- 390 (443)
+||-||-+ .--|-|+.+|+.-|||+|=|...+.+..+.-+..- +|+. .-|+.. +|-|=|.
T Consensus 160 aIGARt~e-sq~hre~ASgls~PVgfKN~t~g~i~~aidAi~aa~~~H~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~~P 238 (348)
T PRK12756 160 AIGARTTE-SQIHREMASALSCPVGFKNGTDGNTRIAIDAIRAARASHMFLSPDKDGQMTIYQTSGNPYGHIIMRGGKKP 238 (348)
T ss_pred hhcccccc-CHHHHHHHhcCCCceEecCCCCCCHHHHHHHHHHHhCCCeeEeeCCCCcEEEEEcCCCCCeEEEeeCCCCC
Confidence 59999976 45599999999999999999999998877665543 5664 444544 4455441
Q ss_pred hHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccC
Q 013450 391 ENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKA 425 (443)
Q Consensus 391 ~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~ 425 (443)
.--.+.+-...++.+++|.+.--|.|==|||..|-
T Consensus 239 NY~~~~v~~a~~~l~~~~l~~~imVDcSH~NS~K~ 273 (348)
T PRK12756 239 NYHAEDIAAACDTLREFDLPEHLVVDFSHGNCQKQ 273 (348)
T ss_pred CCCHHHHHHHHHHHHHCCCCCcEEEECCCcccCCC
Confidence 11223333456678889999999999999998765
No 22
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=78.51 E-value=6.2 Score=39.18 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=66.0
Q ss_pred CceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec-c----ChhHHHhhChHHH
Q 013450 327 HFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR-M----GAENMRVKLPHLI 401 (443)
Q Consensus 327 H~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R-m----Ga~~v~~~LP~LI 401 (443)
-++|||-|+=+ +-.+++.+++..-||.||-|..++++|+...++.+-=... .+|.|+-| . +..+-.--|-.+.
T Consensus 110 d~lkI~s~~~~-n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn-~~i~l~~rG~s~y~~~~~~~~dl~~i~ 187 (260)
T TIGR01361 110 DILQIGARNMQ-NFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSGN-GNVILCERGIRTFEKATRNTLDLSAVP 187 (260)
T ss_pred CEEEECccccc-CHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEECCCCCCCCCCcCCcCHHHHH
Confidence 48999998743 4459999999999999999999999999999999953222 36999988 3 4333333344444
Q ss_pred HHHHHCCCceEEEcCCCCCCc
Q 013450 402 RAVRRSGQIVTWVSDPMHGNT 422 (443)
Q Consensus 402 ~AV~~aG~~ViW~cDPMHGNT 422 (443)
.--+..+.||++ ||=|...
T Consensus 188 ~lk~~~~~pV~~--ds~Hs~G 206 (260)
T TIGR01361 188 VLKKETHLPIIV--DPSHAAG 206 (260)
T ss_pred HHHHhhCCCEEE--cCCCCCC
Confidence 333446888875 6668533
No 23
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=76.10 E-value=7.2 Score=39.90 Aligned_cols=90 Identities=21% Similarity=0.290 Sum_probs=62.0
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChHHHH
Q 013450 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR---MGAENMRVKLPHLIR 402 (443)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R---mGa~~v~~~LP~LI~ 402 (443)
..++|||-|.=|= -.=++-+..-.-||=||=|..++|+|.+--++.+-=...+ +|.|+-| ||..+.---+- -|-
T Consensus 107 vDilQIgAr~~rn-tdLL~a~~~t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~-~vilcERG~~fgy~~~~~D~~-~ip 183 (281)
T PRK12457 107 ADVLQVPAFLARQ-TDLVVAIAKTGKPVNIKKPQFMSPTQMKHVVSKCREAGND-RVILCERGSSFGYDNLVVDML-GFR 183 (281)
T ss_pred CeEEeeCchhhch-HHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCC-eEEEEeCCCCCCCCCcccchH-HHH
Confidence 6799999986431 1223334445689999999999999999999998644443 7777755 56655322122 233
Q ss_pred HHHHC--CCceEEEcCCCCC
Q 013450 403 AVRRS--GQIVTWVSDPMHG 420 (443)
Q Consensus 403 AV~~a--G~~ViW~cDPMHG 420 (443)
.+|+. +.||| +||=|+
T Consensus 184 ~mk~~~t~lPVi--~DpSHs 201 (281)
T PRK12457 184 QMKRTTGDLPVI--FDVTHS 201 (281)
T ss_pred HHHhhCCCCCEE--EeCCcc
Confidence 56664 88995 899995
No 24
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=73.44 E-value=8.7 Score=36.46 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=49.4
Q ss_pred cCCcce-eeCCCCCHHHHHHHHHHhCCCC--CCCcEEEEeccChhHHHhhChHHHHHHHHC--CCceEEEcCCC
Q 013450 350 ANPLGI-KVSDKMDPNELVKLIEILNPQN--KPGRITIITRMGAENMRVKLPHLIRAVRRS--GQIVTWVSDPM 418 (443)
Q Consensus 350 ~NPIGv-KvGP~~~p~elv~L~~~LnP~~--~pGRlTLI~RmGa~~v~~~LP~LI~AV~~a--G~~ViW~cDPM 418 (443)
.|+-++ ..||..+++++.++++.+.=.. .+..+.++.=++.....+.+=.+++..++. |.+| ++||.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~~~~~~~~~v--v~Dpv 111 (254)
T cd01173 40 NHTGYGTWTGFVLSAEELEDLLEGLEALGLLLEYDAVLTGYLGSAEQVEAVAEIVKRLKEKNPNLLY--VCDPV 111 (254)
T ss_pred CCCCCCCCCCeecCHHHHHHHHHHHHHcCCcccCCEEEEecCCCHHHHHHHHHHHHHHHHhCCCceE--EECCC
Confidence 466667 8899999999888888764322 334677777777778888888888888876 6544 79993
No 25
>PTZ00344 pyridoxal kinase; Provisional
Probab=73.05 E-value=9.8 Score=37.63 Aligned_cols=65 Identities=15% Similarity=0.323 Sum_probs=48.9
Q ss_pred eeCCCCCHHHHHHHHHHhCCCC--CCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCC
Q 013450 356 KVSDKMDPNELVKLIEILNPQN--KPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHG 420 (443)
Q Consensus 356 KvGP~~~p~elv~L~~~LnP~~--~pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHG 420 (443)
=.||..+++++.++++.|.-.. ..-...++.=++...+-+.+=.+++..++.|-.+.++|||.=|
T Consensus 52 ~~g~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~ 118 (296)
T PTZ00344 52 IKGHRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMG 118 (296)
T ss_pred ccCeeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccc
Confidence 3478999999999999885422 2337888888888777777777777767777668899999743
No 26
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=71.68 E-value=7.7 Score=38.47 Aligned_cols=127 Identities=17% Similarity=0.243 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccccccccCCCCCcccCCCCceeeccccCCCCchhHHH
Q 013450 266 RELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEF 345 (443)
Q Consensus 266 ~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef 345 (443)
+++.+..-++-..+..+|.| .++|-..|--|+-.+=.+.|-. .+.+ |-.| + =.|.|.+ .|-
T Consensus 137 ~~~i~~~~~aA~~a~~aGfD-------gveih~~~gyL~~qFlsp~~n~--R~d~-yGgs--~---enr~r~~----~ei 197 (327)
T cd02803 137 EQIIEDFAAAARRAKEAGFD-------GVEIHGAHGYLLSQFLSPYTNK--RTDE-YGGS--L---ENRARFL----LEI 197 (327)
T ss_pred HHHHHHHHHHHHHHHHcCCC-------EEEEcchhhhHHHHhcCccccC--CCcc-cCCC--H---HHHHHHH----HHH
Confidence 34555555566666667764 4578888887777666665432 2333 4433 2 2666643 344
Q ss_pred hhhcc------CCcceeeCCC------CCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHH---------hhChHHHHHH
Q 013450 346 LKGVA------NPLGIKVSDK------MDPNELVKLIEILNPQNKPGRITIITRMGAENMR---------VKLPHLIRAV 404 (443)
Q Consensus 346 lrgI~------NPIGvKvGP~------~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~---------~~LP~LI~AV 404 (443)
++.|+ -||+||+.|. .+++|.+++++.|.... ..=|.+..+....... .....+++.+
T Consensus 198 i~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G-~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~i 276 (327)
T cd02803 198 VAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAG-VDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKI 276 (327)
T ss_pred HHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCCCcccccccCCCCCCcchhHHHHHHH
Confidence 44443 2999999986 57899999999997554 3455555555432221 2223566666
Q ss_pred HHC-CCceE
Q 013450 405 RRS-GQIVT 412 (443)
Q Consensus 405 ~~a-G~~Vi 412 (443)
++. +.+|+
T Consensus 277 r~~~~iPVi 285 (327)
T cd02803 277 KKAVKIPVI 285 (327)
T ss_pred HHHCCCCEE
Confidence 654 34443
No 27
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=69.65 E-value=8.1 Score=37.79 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=57.2
Q ss_pred eCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHH--------HhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCC
Q 013450 357 VSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENM--------RVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCG 428 (443)
Q Consensus 357 vGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v--------~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G 428 (443)
|+|.++.+.|.++.+.|+-.+.|==|.+|.++...+- ...+=..++.+++.|..|+ |||=|....++
T Consensus 9 VsP~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~-----lHGYtHq~~~~ 83 (243)
T PF10096_consen 9 VSPFSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIV-----LHGYTHQYGNS 83 (243)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEE-----EEecceecCCC
Confidence 7899999999999999999999999999999876555 4566677888889999988 99998877444
Q ss_pred c
Q 013450 429 L 429 (443)
Q Consensus 429 ~ 429 (443)
.
T Consensus 84 ~ 84 (243)
T PF10096_consen 84 V 84 (243)
T ss_pred c
Confidence 3
No 28
>PLN02978 pyridoxal kinase
Probab=68.06 E-value=11 Score=37.93 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHhCCCCC-CCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCC
Q 013450 359 DKMDPNELVKLIEILNPQNK-PGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHG 420 (443)
Q Consensus 359 P~~~p~elv~L~~~LnP~~~-pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHG 420 (443)
-.++++++..+++-+...+. --.-.+|.-+|.....+.+-.+++..++.+..+.|+|||-=|
T Consensus 65 ~~~~~~~~~~~l~~~~~~~~~~~~ai~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~ 127 (308)
T PLN02978 65 QVLDGEQLWALIEGLEANGLLFYTHLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLG 127 (308)
T ss_pred eeCCHHHHHHHHHHHHHcCCcccCEEEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCccc
Confidence 34667888888887765443 245678889998888899999999999888889999999744
No 29
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=59.27 E-value=15 Score=37.88 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=35.3
Q ss_pred HHHhhChHHHHHHHHCCCceEEE---cCCCCCCcccCCCCccccchhhhhhhhc
Q 013450 392 NMRVKLPHLIRAVRRSGQIVTWV---SDPMHGNTIKAPCGLKTRPFDSIRVNTD 442 (443)
Q Consensus 392 ~v~~~LP~LI~AV~~aG~~ViW~---cDPMHGNT~~~~~G~KTR~f~~Il~Ev~ 442 (443)
--++..|+|-+|--+.|..=+.+ +||=+.=.- .++=+.-..|+++++|++
T Consensus 217 G~Re~V~~larAAvA~GaDGlfiEvHpdP~~AlsD-g~q~l~~~~l~~ll~~l~ 269 (290)
T PLN03033 217 GLRELIPCIARTAVAVGVDGIFMEVHDDPLSAPVD-GPTQWPLRHLEELLEELI 269 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEecCCccccCCC-cccCcCHHHHHHHHHHHH
Confidence 45788999999999999876655 566554331 234577778888888764
No 30
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.43 E-value=24 Score=26.79 Aligned_cols=35 Identities=29% Similarity=0.546 Sum_probs=25.8
Q ss_pred CCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEE
Q 013450 375 PQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTW 413 (443)
Q Consensus 375 P~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW 413 (443)
+...+|.-.++.|+-.+... .+++++++.|+.|+|
T Consensus 36 ~~~~~~~~~v~i~v~~~~~~----~~~~~L~~~G~~v~~ 70 (72)
T cd04883 36 PSKEEDNKILVFRVQTMNPR----PIIEDLRRAGYEVLW 70 (72)
T ss_pred ccCCCCeEEEEEEEecCCHH----HHHHHHHHCCCeeeC
Confidence 44456777778887533322 889999999999999
No 31
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=52.50 E-value=20 Score=37.32 Aligned_cols=89 Identities=24% Similarity=0.321 Sum_probs=56.3
Q ss_pred HHHHHHHHhhhHHhhCCCCCCCCCCccceeecc-cccccccccccccccCCCCCcccCCCCceeeccccCCCCchhHHHh
Q 013450 268 LAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSH-ECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFL 346 (443)
Q Consensus 268 ~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSH-EaLLL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVefl 346 (443)
+.+..-+|-.....+|.| .++|-..| -.|+=.+=++.|- ..+.+ |-.| +=.|+|-+ +|-+
T Consensus 148 ii~~f~~AA~ra~~AGfD-------gVEih~ah~GyLl~qFLSp~~N--~RtDe-yGGs-----lenR~rf~----~eii 208 (382)
T cd02931 148 FVGKFGESAVIAKEAGFD-------GVEIHAVHEGYLLDQFTISLFN--KRTDK-YGGS-----LENRLRFA----IEIV 208 (382)
T ss_pred HHHHHHHHHHHHHHcCCC-------EEEEeccccChHHHHhcCCccC--CCCCc-CCCC-----HHHHhHHH----HHHH
Confidence 334444444455556654 56888888 4555445444441 22333 4332 23688865 7888
Q ss_pred hhccC------CcceeeCC--------------------CCCHHHHHHHHHHhCC
Q 013450 347 KGVAN------PLGIKVSD--------------------KMDPNELVKLIEILNP 375 (443)
Q Consensus 347 rgI~N------PIGvKvGP--------------------~~~p~elv~L~~~LnP 375 (443)
++|++ |||||+.| ..+++|.+++++.|+-
T Consensus 209 ~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~ 263 (382)
T cd02931 209 EEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEE 263 (382)
T ss_pred HHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHH
Confidence 88864 89999986 3578999999998853
No 32
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=52.44 E-value=50 Score=27.98 Aligned_cols=55 Identities=16% Similarity=0.284 Sum_probs=43.0
Q ss_pred eeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCC--ceEEEc
Q 013450 355 IKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQ--IVTWVS 415 (443)
Q Consensus 355 vKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~--~ViW~c 415 (443)
+-.|+.++++++++.+...+|+ +..|+=+-...+ ..++.+++++++.+. ..||+.
T Consensus 31 ~~lg~~~~~~~l~~~~~~~~pd-----vV~iS~~~~~~~-~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 31 IDLGVDVPPEEIVEAAKEEDAD-----AIGLSGLLTTHM-TLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred EECCCCCCHHHHHHHHHHcCCC-----EEEEeccccccH-HHHHHHHHHHHHcCCCCCeEEEE
Confidence 4459999999999999999885 677776633344 668999999999986 456765
No 33
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=50.16 E-value=47 Score=31.21 Aligned_cols=66 Identities=17% Similarity=0.317 Sum_probs=54.2
Q ss_pred HHHHHHHHh--CCCCCCCcEEEEeccChh---HHHhhChHHHHHHHHCCCceEEEcCC-CCCCcccCCCCccc
Q 013450 365 ELVKLIEIL--NPQNKPGRITIITRMGAE---NMRVKLPHLIRAVRRSGQIVTWVSDP-MHGNTIKAPCGLKT 431 (443)
Q Consensus 365 elv~L~~~L--nP~~~pGRlTLI~RmGa~---~v~~~LP~LI~AV~~aG~~ViW~cDP-MHGNT~~~~~G~KT 431 (443)
-|+++|+.+ +|.+ .=.|.|||.--.. +-.+.|-.|=+.....|..+.|..|. +|.--+.+++|.+.
T Consensus 37 Nl~~F~El~vk~~~~-~~~i~LvT~~d~~~~~~Q~~~l~~i~~sl~~~gI~~~~~f~~tiHDR~I~~~nGw~I 108 (148)
T cd02685 37 NFLRFCELVVKPPCE-LKYIHLVTGEDEDNGKQQIEALEEIKQSLASHGVEFTWEFSDTIHDREIRTDNGWII 108 (148)
T ss_pred HHHHHHHHHhcCccc-eEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEECCCccceEEEecCCeEE
Confidence 477888877 5555 5599999998666 44677888999999999999999986 89999999999764
No 34
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional
Probab=49.57 E-value=26 Score=37.06 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=38.3
Q ss_pred CCCChhHHHHHHHHHHH-----------HHHHHHHHhc-CCcccccccccccccccccCchhhHHHHHHHHHHHHhhhHH
Q 013450 213 RNPDPQRLIRAYCQSAA-----------TLNLLRAFAT-GGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMS 280 (443)
Q Consensus 213 R~PDP~Rml~AY~~Saa-----------TLn~lRa~~~-gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~ 280 (443)
=.-||-|||+|+..++. |+++|+.... +.++.+..-.-| .+...+...-...+++|.
T Consensus 128 F~EDPLRILRa~RFaarL~~~gF~ie~eT~~~i~~~~~~~~L~~vs~ERI~-----------~El~kiL~~p~~~l~~L~ 196 (360)
T PRK13296 128 FIEDPLRVVRLARFKAQLSNFNFSIAQEMLALIKELVKTGELNHLTRERLH-----------IEFVKALNNPKIFFTTLK 196 (360)
T ss_pred cccCHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHhhhhhhhhcCCHHHHH-----------HHHHHHHhChHHHHHHHH
Confidence 36799999999999874 8888887643 333332221111 122222223345677899
Q ss_pred hhCCCCC
Q 013450 281 AAGLTVD 287 (443)
Q Consensus 281 a~G~~~~ 287 (443)
.+|+-..
T Consensus 197 ~~glL~~ 203 (360)
T PRK13296 197 ELEALKI 203 (360)
T ss_pred HcCCHHH
Confidence 8887553
No 35
>PLN03007 UDP-glucosyltransferase family protein
Probab=48.79 E-value=37 Score=36.31 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=27.6
Q ss_pred cEEEEeccChhH--HHhhChHHHHHHHHCCCceEEEcCC
Q 013450 381 RITIITRMGAEN--MRVKLPHLIRAVRRSGQIVTWVSDP 417 (443)
Q Consensus 381 RlTLI~RmGa~~--v~~~LP~LI~AV~~aG~~ViW~cDP 417 (443)
|=++..=||... -.+.|-.++++....|++++|++.+
T Consensus 285 ~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~ 323 (482)
T PLN03007 285 DSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRK 323 (482)
T ss_pred CceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEec
Confidence 334555577532 2567888999999999999999885
No 36
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=48.72 E-value=25 Score=36.20 Aligned_cols=88 Identities=24% Similarity=0.334 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCchhHH
Q 013450 267 ELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDGAHVE 344 (443)
Q Consensus 267 ~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVe 344 (443)
++.+..-+|-.....+|. ..+++...|--|+=.|=.+.| |.|. |-.| +=.|+|-+ .|
T Consensus 139 ~ii~~f~~aA~~a~~aGf-------DgVeih~ahGyLl~qFlSp~~N~RtD~-----yGGs-----lenR~Rf~----~e 197 (337)
T PRK13523 139 ETVLAFKQAAVRAKEAGF-------DVIEIHGAHGYLINEFLSPLSNKRTDE-----YGGS-----PENRYRFL----RE 197 (337)
T ss_pred HHHHHHHHHHHHHHHcCC-------CEEEEccccchHHHHhcCCccCCcCCC-----CCCC-----HHHHHHHH----HH
Confidence 344444445555566765 456889999888776666665 4433 4433 12466643 34
Q ss_pred HhhhccC----CcceeeCC------CCCHHHHHHHHHHhCC
Q 013450 345 FLKGVAN----PLGIKVSD------KMDPNELVKLIEILNP 375 (443)
Q Consensus 345 flrgI~N----PIGvKvGP------~~~p~elv~L~~~LnP 375 (443)
-+++|++ ||+||+.+ ..+++|.+++++.|.-
T Consensus 198 ii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~ 238 (337)
T PRK13523 198 IIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKE 238 (337)
T ss_pred HHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHH
Confidence 4555544 89999998 5789999999999953
No 37
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=47.49 E-value=21 Score=36.20 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=31.2
Q ss_pred CCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 013450 351 NPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMG 389 (443)
Q Consensus 351 NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmG 389 (443)
-||.||++|..+.+++.++++.|.-...-| |+++.|+.
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~-I~~~n~~~ 240 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDG-IIATNTTI 240 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcE-EEEECCcc
Confidence 499999999999889999999987555544 88888763
No 38
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=45.84 E-value=5.9 Score=42.18 Aligned_cols=37 Identities=30% Similarity=0.558 Sum_probs=26.6
Q ss_pred ccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCC--cccCCCCccccc
Q 013450 387 RMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGN--TIKAPCGLKTRP 433 (443)
Q Consensus 387 RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGN--T~~~~~G~KTR~ 433 (443)
|+||+-+...+|. .-||++|||-+| ++-...|+|++.
T Consensus 108 ~~~A~fl~~~~~~----------~~vwis~PtW~NH~~If~~aGl~v~~ 146 (396)
T COG1448 108 RVAADFLARFFPD----------ATVWISDPTWPNHKAIFEAAGLEVET 146 (396)
T ss_pred HHHHHHHHHhCCC----------ceEEeCCCCcHhHHHHHHhcCCceee
Confidence 5556665555543 339999999999 667788999853
No 39
>TIGR01309 L30P_arch 50S ribosomal protein L30P, archaeal. This model represents the archaeal ribosomal protein similar to longer (~ 250 residue) eukaryotic 60S ribosomal protein L7 and to the much shorter (~ 60 residue) bacterial 50S ribosomal protein L30. Protein naming follows the SwissProt designation as L30P, while the gene symbol rpmD follows TIGR usage.
Probab=43.91 E-value=16 Score=34.22 Aligned_cols=110 Identities=24% Similarity=0.408 Sum_probs=71.4
Q ss_pred CccccCCCCCCHHHHHHHHHHhccCCCccCHHHH--HHHHHHHHHHhCCCeeEEecCCccchhhhcChhhHHHHHHH--H
Q 013450 79 KKALQLPEYPDKEELESVLKTLDDFPPIVFAGEA--RSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRI--L 154 (443)
Q Consensus 79 ~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~a~Ei--~~Lr~~La~vA~G~AFlLQGGDCAEsF~e~~~~~I~~k~~~--L 154 (443)
+..-|...++|..+ +...|+...|+|+.+|+ +.+++.+.. +|+ +.||. ..|.+.|++++.+ +
T Consensus 26 ~ri~~~V~v~~tp~---~~gML~kV~~yV~~ge~~~~tv~~Li~k--RG~---~~g~~------~ltd~~i~e~~g~~~i 91 (152)
T TIGR01309 26 HRVNHCVLYPETPT---YLGMLQKVKDYVTWGEIDEDTLELLIRK--RGR---LVGGD------KVTDEYVKEVTGYESV 91 (152)
T ss_pred CcCCCEEEEeCCHH---HHHHHHHhHhheeEecCCHHHHHHHHHH--hcc---ccCCC------cCCHHHHHHHcCCccH
Confidence 33445666777755 45566666799999985 456666554 554 23664 4666788887655 6
Q ss_pred HHHHHHHhhcC-------CCceEEeccccccCCCCCCCcccccCCeecccccCCcCCC
Q 013450 155 LQMGVVLMFGG-------QMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNG 205 (443)
Q Consensus 155 lqMa~vL~~g~-------~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg 205 (443)
..|+..|..+. =+|+.|+-=--|-|.+-+..+| .+|-.+- ||||-||.
T Consensus 92 edl~~~i~~~~~~f~~~~~~~~FrL~pPr~G~~~~~k~~~--~~gG~~G-~r~~~In~ 146 (152)
T TIGR01309 92 DELAKALVEGEIKLSEAGLKPVFRLHPPRKGFKGGIKTPY--RDGGELG-YRGEKINE 146 (152)
T ss_pred HHHHHHHHcCCCCccccCccCceeCCCCCccccccccccc--ccCCCCc-ccHHHHHH
Confidence 67776665433 4677777666788875555666 3444554 99999996
No 40
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=43.14 E-value=29 Score=35.49 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccccccccCCCCCcccCCCCceeeccccCCCCchhHHHh
Q 013450 267 ELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFL 346 (443)
Q Consensus 267 ~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVefl 346 (443)
++.+..-+|-..+..+|.| .++|-..|--||=.+=.+.| +..+.+ |..| +=.|.|.+ +|.+
T Consensus 134 ~i~~~f~~aA~~a~~aGfD-------gVeih~ahGyLl~qFlsp~~--N~RtD~-yGGs-----lenR~r~~----~eiv 194 (353)
T cd02930 134 QTIEDFARCAALAREAGYD-------GVEIMGSEGYLINQFLAPRT--NKRTDE-WGGS-----FENRMRFP----VEIV 194 (353)
T ss_pred HHHHHHHHHHHHHHHcCCC-------EEEEecccchHHHHhcCCcc--CCCcCc-cCCC-----HHHHhHHH----HHHH
Confidence 3445555555556667754 56888888777766666543 112233 4433 33688765 5666
Q ss_pred hhccC------CcceeeCCC------CCHHHHHHHHHHhCCCC
Q 013450 347 KGVAN------PLGIKVSDK------MDPNELVKLIEILNPQN 377 (443)
Q Consensus 347 rgI~N------PIGvKvGP~------~~p~elv~L~~~LnP~~ 377 (443)
+.|++ ||+||+++. .+++|.+++++.|....
T Consensus 195 ~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G 237 (353)
T cd02930 195 RAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAG 237 (353)
T ss_pred HHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcC
Confidence 65554 578888864 68999999999997654
No 41
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=41.98 E-value=83 Score=32.99 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=64.2
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc-------ChhHHHhhCh
Q 013450 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM-------GAENMRVKLP 398 (443)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm-------Ga~~v~~~LP 398 (443)
.-++|||-|+=+ +-..++++.+..-||-+|=|..++++|+..-++.+-=... .+|.|.-|. |...+ -|-
T Consensus 202 vd~lkI~s~~~~-n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn-~~i~L~erg~s~yp~~~~~~l--dl~ 277 (360)
T PRK12595 202 VDVIQIGARNMQ-NFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGN-GQIILCERGIRTYEKATRNTL--DIS 277 (360)
T ss_pred CCeEEECccccc-CHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCC-CCEEEECCccCCCCCCCCCCc--CHH
Confidence 448999998765 4578888888899999999999999999999999952222 369998775 44444 233
Q ss_pred HHHHHHHHCCCceEEEcCCCCC
Q 013450 399 HLIRAVRRSGQIVTWVSDPMHG 420 (443)
Q Consensus 399 ~LI~AV~~aG~~ViW~cDPMHG 420 (443)
.+..--+..|.||++ ||=|.
T Consensus 278 ~i~~lk~~~~~PV~~--d~~Hs 297 (360)
T PRK12595 278 AVPILKQETHLPVMV--DVTHS 297 (360)
T ss_pred HHHHHHHHhCCCEEE--eCCCC
Confidence 333333347888875 66684
No 42
>COG0722 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=40.21 E-value=1e+02 Score=32.73 Aligned_cols=110 Identities=23% Similarity=0.312 Sum_probs=75.8
Q ss_pred cCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHh-CCCC-----CCCcEEE----
Q 013450 315 DSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEIL-NPQN-----KPGRITI---- 384 (443)
Q Consensus 315 d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~L-nP~~-----~pGRlTL---- 384 (443)
|+.+..|++--=-|-=||-||-. +--|=|..+|+.=|||-|=|-.-+-.-.+.-+..- +|+. ..|+..+
T Consensus 146 d~ispqy~aDLiSwgAIGARTtE-SQ~HRe~ASGLs~PvGFKNgTdGnl~vAidAi~AA~~~H~Fl~~~k~G~~aiv~T~ 224 (351)
T COG0722 146 DPISPQYLADLISWGAIGARTTE-SQIHRELASGLSCPVGFKNGTDGNLKVAIDAIRAAAHPHHFLSVTKDGQVAIVETS 224 (351)
T ss_pred ccCcHHHHHHHHHHhhccccchh-hHHHHHHhhccCCCccccCCCCccHHHHHHHHHHhhCCceeeecCCCCceEEEEcc
Confidence 44445544322123339999964 77899999999999999999887776665555433 6764 6666654
Q ss_pred -------EeccChh---HHHhhChHHHHHHHHCCCceEEEcCCCCCCcccC
Q 013450 385 -------ITRMGAE---NMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKA 425 (443)
Q Consensus 385 -------I~RmGa~---~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~ 425 (443)
|-|=|.. -=.+.+-.-++..+++|.+.--|.|==|||.-|-
T Consensus 225 GNp~~HvILRGG~~~PNYda~~v~~~~~~l~~~gl~~~lmID~SH~NS~K~ 275 (351)
T COG0722 225 GNPDGHVILRGGKKGPNYDAASVAAACEQLEKAGLPPRLMIDCSHANSGKD 275 (351)
T ss_pred CCCCceEEecCCCCCCCCCHHHHHHHHHHHHHcCCCCeEEEeccCCccccC
Confidence 6676632 1122233456777899999999999999998664
No 43
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=39.16 E-value=57 Score=34.32 Aligned_cols=44 Identities=11% Similarity=0.091 Sum_probs=25.5
Q ss_pred HHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEE
Q 013450 368 KLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWV 414 (443)
Q Consensus 368 ~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~ 414 (443)
.|...+|....--.+.++.=.+.+.....+|.+++.. |..|+++
T Consensus 158 ~l~~~id~~i~~~~~kVvvD~~~G~~~~~~~~ll~~l---G~~v~~~ 201 (443)
T PRK10887 158 FCKSTFPNELSLRGLKIVVDCANGATYHIAPNVFREL---GAEVIAI 201 (443)
T ss_pred HHHHhcCcccccCCCEEEEECCCchHHHHHHHHHHHh---CCeEEEE
Confidence 3444555311112556666666666677778777654 6777765
No 44
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=39.10 E-value=87 Score=28.65 Aligned_cols=63 Identities=16% Similarity=0.326 Sum_probs=40.6
Q ss_pred eeeCCCCCHH---HHHHHHHHhCCCCCCCcEEEEe--ccChhH-----HHhhChHHHHHHHHCCCce-EEEcCC
Q 013450 355 IKVSDKMDPN---ELVKLIEILNPQNKPGRITIIT--RMGAEN-----MRVKLPHLIRAVRRSGQIV-TWVSDP 417 (443)
Q Consensus 355 vKvGP~~~p~---elv~L~~~LnP~~~pGRlTLI~--RmGa~~-----v~~~LP~LI~AV~~aG~~V-iW~cDP 417 (443)
+|.++...++ .++++++..+.....+|+.+++ -.|.+. ..-..+.+|+..++.|.+| +|-+|=
T Consensus 86 iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sf~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtvn~ 159 (179)
T cd08555 86 IKQDSPEYDEFLAKVLKELRVYFDYDLRGKVVLSSFNALGVDYYNFSSKLIKDTELIASANKLGLLSRIWTVND 159 (179)
T ss_pred eCCCCCcchHHHHHHHHHHHHcCCcccCCCEEEEeecccCCChhcccchhhcCHHHHHHHHHCCCEEEEEeeCC
Confidence 5665544444 4444444444322668999888 345443 2346899999999999985 798773
No 45
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=38.33 E-value=43 Score=33.53 Aligned_cols=49 Identities=33% Similarity=0.485 Sum_probs=35.2
Q ss_pred hhHHHhhhc----cCCcceeeCCCCCHHHHHHHHHHhCCCC-CCCcEEEEeccC
Q 013450 341 AHVEFLKGV----ANPLGIKVSDKMDPNELVKLIEILNPQN-KPGRITIITRMG 389 (443)
Q Consensus 341 AHVeflrgI----~NPIGvKvGP~~~p~elv~L~~~LnP~~-~pGRlTLI~RmG 389 (443)
...+.++.| .=||.||++|..+.+++.++++.|.-.- -.-=||+|-+++
T Consensus 144 ~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~ 197 (294)
T cd04741 144 ATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLG 197 (294)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCC
Confidence 455566655 3599999999999999999999987541 122377766664
No 46
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=38.17 E-value=1.1e+02 Score=26.44 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=41.8
Q ss_pred eeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCC--ceEEEc
Q 013450 355 IKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQ--IVTWVS 415 (443)
Q Consensus 355 vKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~--~ViW~c 415 (443)
+-.|+...++++++-+...+|+ +..|+=+-. .-.+.++.+++++++.|. .++|++
T Consensus 31 i~lG~~vp~e~~~~~a~~~~~d-----~V~iS~~~~-~~~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 31 IYTGLRQTPEEIVEAAIQEDVD-----VIGLSSLSG-GHMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred EECCCCCCHHHHHHHHHHcCCC-----EEEEcccch-hhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 5689999999999999988774 555654433 344568999999999987 356665
No 47
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=37.67 E-value=33 Score=35.29 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=39.4
Q ss_pred ccccCCCCchhHHHhhhcc-----------CCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 013450 332 GERTRQLDGAHVEFLKGVA-----------NPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMG 389 (443)
Q Consensus 332 GeRTRqlDgAHVeflrgI~-----------NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmG 389 (443)
|.|..|-.....+.++.|+ =||.||++|.++-+++.++++.+.-...- =|++|.++-
T Consensus 181 ~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~Gad-Gi~l~NT~~ 248 (335)
T TIGR01036 181 GLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGID-GVIATNTTV 248 (335)
T ss_pred CcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCc-EEEEECCCC
Confidence 4555555555556666653 59999999999988888888877533333 478877764
No 48
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=35.91 E-value=80 Score=33.26 Aligned_cols=15 Identities=47% Similarity=0.636 Sum_probs=8.7
Q ss_pred CCCceEEEcCCCCCCcc
Q 013450 407 SGQIVTWVSDPMHGNTI 423 (443)
Q Consensus 407 aG~~ViW~cDPMHGNT~ 423 (443)
.+.+| ++|+|||-+.
T Consensus 172 ~~~ki--vvd~~~G~~~ 186 (461)
T cd05800 172 AGLKV--VVDPMYGAGA 186 (461)
T ss_pred CCceE--EEeCCCCCcH
Confidence 34444 4677777653
No 49
>PF14658 EF-hand_9: EF-hand domain
Probab=35.89 E-value=37 Score=27.89 Aligned_cols=35 Identities=26% Similarity=0.590 Sum_probs=26.4
Q ss_pred HHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEE
Q 013450 343 VEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITI 384 (443)
Q Consensus 343 VeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTL 384 (443)
+.|||.+. |++-+-++|..|+..|||++.-|+|-|
T Consensus 21 ~~~Lra~~-------~~~p~e~~Lq~l~~elDP~g~~~~v~~ 55 (66)
T PF14658_consen 21 ITYLRAVT-------GRSPEESELQDLINELDPEGRDGSVNF 55 (66)
T ss_pred HHHHHHHc-------CCCCcHHHHHHHHHHhCCCCCCceEeH
Confidence 35666553 336677899999999999999887753
No 50
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=35.07 E-value=81 Score=30.70 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCCCCC-CcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcC--CCCCCc
Q 013450 363 PNELVKLIEILNPQNKP-GRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSD--PMHGNT 422 (443)
Q Consensus 363 p~elv~L~~~LnP~~~p-GRlTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cD--PMHGNT 422 (443)
-+++.+|.+.|-|...+ .+|-+-+=.| +.+.+.|=.+-+.++.-+.+.+|+.| ||-|.-
T Consensus 20 ~~~F~~lw~~l~~~~~~Lk~lAiSc~~~-~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDI 81 (183)
T PF12617_consen 20 LAAFERLWQALAPSVPQLKLLAISCPDG-EGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDI 81 (183)
T ss_pred cHHHHHHHHHHHhhhhhccEEEEECCCC-HHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCC
Confidence 36788899999998888 4555555555 56668899999999999999999999 999874
No 51
>PLN02826 dihydroorotate dehydrogenase
Probab=34.81 E-value=41 Score=35.88 Aligned_cols=54 Identities=22% Similarity=0.299 Sum_probs=36.2
Q ss_pred ccccCCCCchhHHHhhhc-------------cCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEe
Q 013450 332 GERTRQLDGAHVEFLKGV-------------ANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIIT 386 (443)
Q Consensus 332 GeRTRqlDgAHVeflrgI-------------~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~ 386 (443)
|.|.-|-.....++++.| .-||-||++|.++.+++.++++.+-=....| |++|-
T Consensus 231 glr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dG-Ii~~N 297 (409)
T PLN02826 231 GLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDG-LIISN 297 (409)
T ss_pred CcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCE-EEEEc
Confidence 455555445556666655 3499999999999999888888764344433 44443
No 52
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=34.40 E-value=53 Score=34.63 Aligned_cols=46 Identities=13% Similarity=0.095 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEE
Q 013450 366 LVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWV 414 (443)
Q Consensus 366 lv~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~ 414 (443)
+..|++.+|..-.--++.++.=.+.+.....+|.+++ +-|..|+++
T Consensus 162 ~~~l~~~id~~i~~~~~kVvvD~~~Ga~~~~~~~il~---~lg~~v~~~ 207 (450)
T PRK14314 162 IVFLKATFPKGLTLKGLKIVLDCANGAAYKVAPAVFE---ELGAEVICI 207 (450)
T ss_pred HHHHHHhhccccCCCCCEEEEECCCchHHHHHHHHHH---HcCCeEEEe
Confidence 3445565652111124555556666666777777776 447777766
No 53
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=33.60 E-value=85 Score=28.72 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceE
Q 013450 358 SDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVT 412 (443)
Q Consensus 358 GP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~~Vi 412 (443)
|..++.+++++.++.+.+. .+ -|+=.|-+-..+.|-.|++.+++.|.++.
T Consensus 43 g~~lt~eel~~~I~~~~~~-~~----gVt~SGGEl~~~~l~~ll~~lk~~Gl~i~ 92 (147)
T TIGR02826 43 GTKLTPEYLTKTLDKYRSL-IS----CVLFLGGEWNREALLSLLKIFKEKGLKTC 92 (147)
T ss_pred CcCCCHHHHHHHHHHhCCC-CC----EEEEechhcCHHHHHHHHHHHHHCCCCEE
Confidence 6679999999999998744 23 34446777444668899999999998764
No 54
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=33.37 E-value=52 Score=33.79 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=30.8
Q ss_pred CCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 013450 351 NPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM 388 (443)
Q Consensus 351 NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm 388 (443)
=||.||++|..+.+|+.++++.+.-...- =|+++.|+
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gad-gi~~~nt~ 248 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGID-GVIATNTT 248 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCc-EEEEeCCc
Confidence 49999999999999999999998755443 58888875
No 55
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.21 E-value=1.5e+02 Score=26.01 Aligned_cols=75 Identities=9% Similarity=0.102 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEE--------eccChhHHHhhChHHHHHHHH--CCCceEEEcC-CCCCCcccCCCCccc
Q 013450 363 PNELVKLIEILNPQNKPGRITII--------TRMGAENMRVKLPHLIRAVRR--SGQIVTWVSD-PMHGNTIKAPCGLKT 431 (443)
Q Consensus 363 p~elv~L~~~LnP~~~pGRlTLI--------~RmGa~~v~~~LP~LI~AV~~--aG~~ViW~cD-PMHGNT~~~~~G~KT 431 (443)
.+++.+-++.+- ...| .+.+| .++..+...+.|-.+|+++++ .+.+|+|++= |+.++. ....-.+
T Consensus 34 ~~~~~~~l~~~~-~~~p-d~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~~~--~~~~~~~ 109 (169)
T cd01828 34 TRGLLARLDEDV-ALQP-KAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSILPVGELK--SIPNEQI 109 (169)
T ss_pred HHHHHHHHHHHh-ccCC-CEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCccC--cCCHHHH
Confidence 344444444333 2344 55555 346789999999999999999 8889999763 222111 1112344
Q ss_pred cchhhhhhhh
Q 013450 432 RPFDSIRVNT 441 (443)
Q Consensus 432 R~f~~Il~Ev 441 (443)
+.|.+++.|+
T Consensus 110 ~~~n~~l~~~ 119 (169)
T cd01828 110 EELNRQLAQL 119 (169)
T ss_pred HHHHHHHHHH
Confidence 5566666554
No 56
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=32.79 E-value=43 Score=33.93 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=28.9
Q ss_pred HHHhhhccC----CcceeeCCCCCHHHHHHHHHHhCCCCCC
Q 013450 343 VEFLKGVAN----PLGIKVSDKMDPNELVKLIEILNPQNKP 379 (443)
Q Consensus 343 VeflrgI~N----PIGvKvGP~~~p~elv~L~~~LnP~~~p 379 (443)
.+.++.|+. ||.||+.|.++..++.+.++.+.-+...
T Consensus 146 ~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~ 186 (310)
T PRK02506 146 EQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLA 186 (310)
T ss_pred HHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceE
Confidence 355566554 9999999999999999999887665544
No 57
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=32.79 E-value=33 Score=34.30 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=33.2
Q ss_pred HHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCcc---ccchhhhhhhhc
Q 013450 393 MRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLK---TRPFDSIRVNTD 442 (443)
Q Consensus 393 v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~K---TR~f~~Il~Ev~ 442 (443)
+.+.+=..+++..++|..+|+++||..+.+.-++.=++ -..+..|+++++
T Consensus 178 i~~~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~ 230 (339)
T PRK06252 178 VTDFCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVK 230 (339)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhc
Confidence 34455556777778899999999999887776665443 233345555543
No 58
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=32.75 E-value=15 Score=34.01 Aligned_cols=41 Identities=34% Similarity=0.663 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccccccc
Q 013450 262 GDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRL 314 (443)
Q Consensus 262 ~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~altR~ 314 (443)
.+.|..+..+||++|.||.. ||.+.. =|.-++-|.+.|||-
T Consensus 94 ~~~F~~~L~~LD~cl~Fl~~------h~~fke------a~~Y~~rf~q~ltRA 134 (157)
T PF04136_consen 94 SDSFKPMLSRLDECLEFLEE------HPNFKE------AEVYLIRFRQCLTRA 134 (157)
T ss_pred chHHHHHHHHHHHHHHHHHH------hhhhhh------hHHHHHHHHHHHHHH
Confidence 45789999999999999998 465444 455678899999985
No 59
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.09 E-value=1.3e+02 Score=26.98 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=32.6
Q ss_pred hHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhhhhhhh
Q 013450 391 ENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRVNT 441 (443)
Q Consensus 391 ~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev 441 (443)
+...+.|-.+|+.+++.|.+|+|++.|-=+.... .-+.+.|..+++++
T Consensus 91 ~~~~~~l~~lv~~~~~~~~~vili~~pp~~~~~~---~~~~~~~~~~~~~~ 138 (200)
T cd01829 91 EEYRQRIDELLNVARAKGVPVIWVGLPAMRSPKL---SADMVYLNSLYREE 138 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEcCCCCCChhH---hHHHHHHHHHHHHH
Confidence 4677888999999999999999999864222111 12445566666554
No 60
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=31.89 E-value=39 Score=33.03 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=28.6
Q ss_pred CCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 013450 351 NPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM 388 (443)
Q Consensus 351 NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm 388 (443)
=||.||++|..+++|+.++++.|.-.. .-=|+++.|+
T Consensus 163 ~pv~vKl~~~~~~~~~~~~a~~l~~~G-ad~i~~~~~~ 199 (289)
T cd02810 163 IPLLVKLSPYFDLEDIVELAKAAERAG-ADGLTAINTI 199 (289)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHcC-CCEEEEEccc
Confidence 489999999999999999999886443 2356666554
No 61
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.66 E-value=65 Score=33.70 Aligned_cols=87 Identities=24% Similarity=0.322 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCchhHH
Q 013450 267 ELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDGAHVE 344 (443)
Q Consensus 267 ~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVe 344 (443)
++.+..-+|-+....+|. ..+++-..|--|+=.+=++.+ |.|. |-.| +=.|+|-+ .|
T Consensus 141 ~ii~~f~~AA~~a~~aGf-------DgVeih~ahGyLl~qFLSp~~N~RtDe-----YGGs-----lenR~Rf~----~e 199 (361)
T cd04747 141 DVIAAFARAAADARRLGF-------DGIELHGAHGYLIDQFFWAGTNRRADG-----YGGS-----LAARSRFA----AE 199 (361)
T ss_pred HHHHHHHHHHHHHHHcCC-------CEEEEecccchHHHHhcCCCCCCCCCC-----CCCC-----HHHHHHHH----HH
Confidence 344444444455555665 456888999888877777766 5443 4433 23577753 45
Q ss_pred HhhhccC------CcceeeCC----------CCCHHHHHHHHHHhC
Q 013450 345 FLKGVAN------PLGIKVSD----------KMDPNELVKLIEILN 374 (443)
Q Consensus 345 flrgI~N------PIGvKvGP----------~~~p~elv~L~~~Ln 374 (443)
-+++|++ |||||++| ..+++|.++++..|+
T Consensus 200 ii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~ 245 (361)
T cd04747 200 VVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLV 245 (361)
T ss_pred HHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHH
Confidence 5555544 89999996 368899999988886
No 62
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=31.11 E-value=56 Score=33.55 Aligned_cols=86 Identities=28% Similarity=0.405 Sum_probs=56.3
Q ss_pred HHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCchhHHH
Q 013450 268 LAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEF 345 (443)
Q Consensus 268 ~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef 345 (443)
+.+..-+|-.....+|. ..+++-..|-.|+=.+=.+.+ |.| . |-.| +=.|+|. .+|-
T Consensus 139 ii~~f~~AA~ra~~aGf-------DgVeih~ahGyLl~qFlsp~~N~RtD----~-yGGs-----lenR~r~----~~ei 197 (343)
T cd04734 139 IIAAFADAARRCQAGGL-------DGVELQAAHGHLIDQFLSPLTNRRTD----E-YGGS-----LENRMRF----LLEV 197 (343)
T ss_pred HHHHHHHHHHHHHHcCC-------CEEEEccccchHHHHhhCCCcCCCCC----c-CCCC-----HHHHhHH----HHHH
Confidence 33333344444455665 456888999888766666654 433 2 4433 3478775 4566
Q ss_pred hhhccC------CcceeeCCC------CCHHHHHHHHHHhC
Q 013450 346 LKGVAN------PLGIKVSDK------MDPNELVKLIEILN 374 (443)
Q Consensus 346 lrgI~N------PIGvKvGP~------~~p~elv~L~~~Ln 374 (443)
+++|+. ||+||+|+. .+++|.+++++.|+
T Consensus 198 v~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~ 238 (343)
T cd04734 198 LAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLA 238 (343)
T ss_pred HHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHH
Confidence 666654 688999984 57899999999996
No 63
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=30.88 E-value=6.1e+02 Score=26.13 Aligned_cols=102 Identities=18% Similarity=0.258 Sum_probs=57.1
Q ss_pred CccceeecccccccccccccccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccC-----CcceeeCCC------
Q 013450 292 TTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVAN-----PLGIKVSDK------ 360 (443)
Q Consensus 292 ~~~~~~TSHEaLLL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~N-----PIGvKvGP~------ 360 (443)
..+++-..|--||=.+=++.|-. .+.+ |-.| +-.|.|- -.|-++.|++ |||||+++.
T Consensus 167 DgVeih~ahGyLl~qFlSp~~N~--R~D~-yGGs-----lenR~rf----~~eii~air~~vg~d~v~vRis~~~~~~~~ 234 (338)
T cd02933 167 DGVEIHGANGYLIDQFLRDGSNK--RTDE-YGGS-----IENRARF----LLEVVDAVAEAIGADRVGIRLSPFGTFNDM 234 (338)
T ss_pred CEEEEccccchhHHHhcCCccCC--CCCc-CCCc-----HHHhhhH----HHHHHHHHHHHhCCCceEEEECccccCCCC
Confidence 34567777766665555554422 2333 4433 3367764 3566666653 899999753
Q ss_pred ---CCHHHHHHHHHHhCCCCCCCcEEE-EeccChhHHHhhChHHHHHHHHC
Q 013450 361 ---MDPNELVKLIEILNPQNKPGRITI-ITRMGAENMRVKLPHLIRAVRRS 407 (443)
Q Consensus 361 ---~~p~elv~L~~~LnP~~~pGRlTL-I~RmGa~~v~~~LP~LI~AV~~a 407 (443)
.+.+|.+++++.|.-... -=|.+ ..++.... ....-.+++.|++.
T Consensus 235 ~~~~~~ee~~~~~~~l~~~g~-d~i~vs~g~~~~~~-~~~~~~~~~~ik~~ 283 (338)
T cd02933 235 GDSDPEATFSYLAKELNKRGL-AYLHLVEPRVAGNP-EDQPPDFLDFLRKA 283 (338)
T ss_pred CCCCCHHHHHHHHHHHHHcCC-cEEEEecCCCCCcc-cccchHHHHHHHHH
Confidence 588999999999965431 12222 11222111 33445566666664
No 64
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=29.67 E-value=31 Score=37.70 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=16.0
Q ss_pred ccccCCCCCCCcccccCCeecccccCCc
Q 013450 175 MAGQFAKPRSDPFEEKNGVKLPSYRGDN 202 (443)
Q Consensus 175 iAGQfAKPRS~~~E~~~G~~LPsYRGD~ 202 (443)
+=|||.+= .++|..+|.||-+-
T Consensus 292 VrGQY~~g------~~~g~~~~gY~~e~ 313 (495)
T PRK05722 292 VRGQYTAG------WIGGKPVPGYREEE 313 (495)
T ss_pred eeccccCC------CCCCCCCCCccCCC
Confidence 35999642 24799999999753
No 65
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=28.70 E-value=84 Score=36.43 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=38.1
Q ss_pred CCChhHHHHHHHHHHH---------HHHHHHHHhcCCcccccccccccccccccCchhhHHHHHHHH---HHHHhhhHHh
Q 013450 214 NPDPQRLIRAYCQSAA---------TLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHR---VDEALGFMSA 281 (443)
Q Consensus 214 ~PDP~Rml~AY~~Saa---------TLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~---i~~al~Fm~a 281 (443)
..||.|||+++..++. |++.||.-.. ..+..+-..+...+.+.++-.. ...+|+.|..
T Consensus 340 ~~dp~riLr~fr~~a~~~~~~i~~~t~~~i~~~~~----------~~~~~l~~~~~eR~ef~kiL~~~~~~~~~l~~M~~ 409 (854)
T PRK01759 340 EQQPESILDLFFYLTQYPQAEIHSTTLRQLRLALE----------QLQQPLCELPAARERFLRLFNQPNAIKRALVPMHQ 409 (854)
T ss_pred hhCHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHH----------hccchhccCHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 5699999999986654 6777664211 1122233334444455554433 3467889999
Q ss_pred hCCCCC
Q 013450 282 AGLTVD 287 (443)
Q Consensus 282 ~G~~~~ 287 (443)
+|+-..
T Consensus 410 ~GvL~~ 415 (854)
T PRK01759 410 YGVLTA 415 (854)
T ss_pred hCCHHH
Confidence 887643
No 66
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=27.87 E-value=1.2e+02 Score=27.39 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=39.3
Q ss_pred eCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHH----hhChHHHHHHHHC-CCceEEE
Q 013450 357 VSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMR----VKLPHLIRAVRRS-GQIVTWV 414 (443)
Q Consensus 357 vGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~----~~LP~LI~AV~~a-G~~ViW~ 414 (443)
-|-.++.+++.++++.|......+-||| .|-+=.. +.|-.+++.+++. |.+.+|+
T Consensus 42 ~g~~~~~~~~~~i~~~l~~~~~~~gVt~---sGGEPllq~~~~~l~~ll~~~k~~~~~~~~~~ 101 (154)
T TIGR02491 42 GGKEFTEALEKEIIRDLNDNPLIDGLTL---SGGDPLYPRNVEELIELVKKIKAEFPEKDIWL 101 (154)
T ss_pred CCCcCCHHHHHHHHHHHHhcCCcCeEEE---eChhhCCCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 4778998888888888876643455666 5666554 4577888888876 5666776
No 67
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=27.84 E-value=63 Score=31.51 Aligned_cols=42 Identities=19% Similarity=0.365 Sum_probs=27.5
Q ss_pred HHHhhhccC---CcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEe
Q 013450 343 VEFLKGVAN---PLGIKVSDKMDPNELVKLIEILNPQNKPGRITIIT 386 (443)
Q Consensus 343 VeflrgI~N---PIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~ 386 (443)
.++++.|++ ||.||+.+..+ ++.++|++.|.-...-+ |++.+
T Consensus 129 ~eiv~avr~~~~pVsvKir~g~~-~~~~~la~~l~~aG~d~-ihv~~ 173 (233)
T cd02911 129 SEFIKALKETGVPVSVKIRAGVD-VDDEELARLIEKAGADI-IHVDA 173 (233)
T ss_pred HHHHHHHHhcCCCEEEEEcCCcC-cCHHHHHHHHHHhCCCE-EEECc
Confidence 566666655 99999999887 67777777775433332 44433
No 68
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=27.53 E-value=1.3e+02 Score=30.69 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=33.0
Q ss_pred HHHhhChHHHHHHHHCCCceEEE---cCCCCCCcccCCCCccccchhhhhhhhc
Q 013450 392 NMRVKLPHLIRAVRRSGQIVTWV---SDPMHGNTIKAPCGLKTRPFDSIRVNTD 442 (443)
Q Consensus 392 ~v~~~LP~LI~AV~~aG~~ViW~---cDPMHGNT~~~~~G~KTR~f~~Il~Ev~ 442 (443)
--++..|+|-+|--+.|..=+.+ +||=+.=. -.++=+.--.|+.++++++
T Consensus 198 G~r~~v~~la~AAvA~GaDGl~iEvHpdP~~Als-Dg~q~l~~~~~~~ll~~l~ 250 (258)
T TIGR01362 198 GLREFVPTLARAAVAVGIDGLFMETHPDPKNAKS-DGPNMLPLSELEGLLEKLL 250 (258)
T ss_pred CcHHHHHHHHHHHHHhCCCEEEEEeCCCccccCC-CccccCCHHHHHHHHHHHH
Confidence 45788999999999999876655 45543322 1123456667777777664
No 69
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.46 E-value=61 Score=33.30 Aligned_cols=87 Identities=21% Similarity=0.299 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCchhHH
Q 013450 267 ELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDGAHVE 344 (443)
Q Consensus 267 ~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVe 344 (443)
++.+...+|-.....+|.| .+++-..|--||=.+=.+.+ |.| + |-.| + =.|+|-+ .|
T Consensus 141 ~ii~~f~~aA~~a~~aGfD-------gVeih~ahGyLl~qFlsp~~N~R~D----~-yGGs--l---enR~r~~----~e 199 (353)
T cd04735 141 DIIDAFGEATRRAIEAGFD-------GVEIHGANGYLIQQFFSPHSNRRTD----E-WGGS--L---ENRMRFP----LA 199 (353)
T ss_pred HHHHHHHHHHHHHHHcCCC-------EEEEccccchHHHHhcCCccCCCCc----c-cCCc--H---HHHHHHH----HH
Confidence 3444444455555667654 55788888887766666655 433 2 5555 2 2777753 56
Q ss_pred HhhhccC----------CcceeeCCC------CCHHHHHHHHHHhC
Q 013450 345 FLKGVAN----------PLGIKVSDK------MDPNELVKLIEILN 374 (443)
Q Consensus 345 flrgI~N----------PIGvKvGP~------~~p~elv~L~~~Ln 374 (443)
-+++|++ |||||+++. ++++|.++++..|+
T Consensus 200 ii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~ 245 (353)
T cd04735 200 VVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLA 245 (353)
T ss_pred HHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHH
Confidence 6777654 678899873 57899999999996
No 70
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=27.36 E-value=1.4e+02 Score=30.75 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=53.9
Q ss_pred ccccCCCCchhHHHhhhc--cCCcceeeCCCCCHHHHHHHHHHhCCCC---CCCcEEEEeccC--hhHHHhhChHHHHHH
Q 013450 332 GERTRQLDGAHVEFLKGV--ANPLGIKVSDKMDPNELVKLIEILNPQN---KPGRITIITRMG--AENMRVKLPHLIRAV 404 (443)
Q Consensus 332 GeRTRqlDgAHVeflrgI--~NPIGvKvGP~~~p~elv~L~~~LnP~~---~pGRlTLI~RmG--a~~v~~~LP~LI~AV 404 (443)
|-+.--+|-..|..++.. .=||=+ ||.- .||= .| ..--++..|+|.+|-
T Consensus 171 gy~~~~~D~~~ip~mk~~~t~lPVi~------------------DpSHsvq~p~~------~g~~s~G~re~v~~larAA 226 (281)
T PRK12457 171 GYDNLVVDMLGFRQMKRTTGDLPVIF------------------DVTHSLQCRDP------LGAASGGRRRQVLDLARAG 226 (281)
T ss_pred CCCCcccchHHHHHHHhhCCCCCEEE------------------eCCccccCCCC------CCCCCCCCHHHHHHHHHHH
Confidence 455556777777777776 456643 3333 1221 11 134578899999999
Q ss_pred HHCCCceEEE---cCCCCCCcccCCCCccccchhhhhhhhc
Q 013450 405 RRSGQIVTWV---SDPMHGNTIKAPCGLKTRPFDSIRVNTD 442 (443)
Q Consensus 405 ~~aG~~ViW~---cDPMHGNT~~~~~G~KTR~f~~Il~Ev~ 442 (443)
-+.|..=+.+ +||=+.=. -.++=+.-..|+.+++|++
T Consensus 227 vA~GaDGl~iEvHpdP~~Als-Dg~q~l~~~~~~~l~~~l~ 266 (281)
T PRK12457 227 MAVGLAGLFLEAHPDPDRARC-DGPSALPLDQLEPFLSQVK 266 (281)
T ss_pred HHhCCCEEEEEecCCccccCC-CcccccCHHHHHHHHHHHH
Confidence 9999876665 56654433 1234566777888887764
No 71
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=27.12 E-value=1.5e+02 Score=23.13 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=40.6
Q ss_pred hCCCeeEEecCCccchhhhcChhhHHHHHHHHHHHHHHHhhcCCCceEE----ecccccc
Q 013450 123 AMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVK----VGRMAGQ 178 (443)
Q Consensus 123 A~G~AFlLQGGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVk----VGRiAGQ 178 (443)
..|...++- =...++|.+++++.+.+-++++.++...|....+.+-+. -|-.+||
T Consensus 17 ~~gh~lIip-k~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~ 75 (86)
T cd00468 17 APGHVLVCP-KRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQ 75 (86)
T ss_pred CCCcEEEeC-chhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCC
Confidence 446666665 667889999999999999999999999986544444333 3556776
No 72
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=26.77 E-value=84 Score=33.16 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=26.2
Q ss_pred HHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEE---cCCCCCC
Q 013450 369 LIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWV---SDPMHGN 421 (443)
Q Consensus 369 L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~---cDPMHGN 421 (443)
|++.+|.+..--++.++.=.+.+-....+|.+++. -|..|+++ -||+|.|
T Consensus 164 l~~~id~~i~~~~lkVvvD~~~G~~~~~~~~ll~~---lG~~v~~i~~~~dg~~~~ 216 (448)
T PRK14315 164 AKRTLPRDLRLDGLRVVVDCANGAAYKVAPEALWE---LGAEVITIGVEPNGFNIN 216 (448)
T ss_pred HHHhcccccccCCCEEEEECCCchHHHHHHHHHHH---cCCeEEEeccCCCCCCCC
Confidence 55555532111244455555555556667777754 36667765 3555543
No 73
>PRK13820 argininosuccinate synthase; Provisional
Probab=25.86 E-value=68 Score=34.18 Aligned_cols=96 Identities=24% Similarity=0.440 Sum_probs=59.2
Q ss_pred hhhHHhhCCCCC----CCCCCcccee-ecccccccccccccccccCCCCCcccCCCCceeeccccCCCCch---hHHHhh
Q 013450 276 LGFMSAAGLTVD----HPIMTTTEFW-TSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGA---HVEFLK 347 (443)
Q Consensus 276 l~Fm~a~G~~~~----~~~~~~~~~~-TSHEaLLL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgA---HVeflr 347 (443)
+.|.+..|+... .|-....++| +||||-.|+ |+......++ |.|.=.+...+|-+ -|+|=+
T Consensus 153 ~~ya~~~gip~~~~~~~~yS~d~nlw~~s~e~g~le--------dp~~~~p~~~---~~~t~~p~~~p~~p~~v~i~F~~ 221 (394)
T PRK13820 153 IEYAKEKGIPVPVGKEKPWSIDENLWSRSIEGGKLE--------DPAFEPPEEI---YAWTVSPEDAPDEPEIVEIEFEE 221 (394)
T ss_pred HHHHHHcCCCCCcCCCCCcccccccccccccccccC--------CCCcCcchHH---HhccCCHhHCCCCCeEEEEEEEc
Confidence 445566777653 1211223455 799999884 2322222222 45554444444433 367777
Q ss_pred hccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEE
Q 013450 348 GVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITII 385 (443)
Q Consensus 348 gI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI 385 (443)
|+ ||+|- |=+|+|-||++.++.+-=.+--||+.++
T Consensus 222 G~--pv~ln-g~~~~~~~li~~lN~i~g~~GvGr~d~v 256 (394)
T PRK13820 222 GV--PVAIN-GEKMDGVELIRKLNEIAGKHGVGRTDMM 256 (394)
T ss_pred cE--EEEEC-CeeCCHHHHHHHHHHHHhhcccCccccc
Confidence 75 88887 8899988888888888777778887654
No 74
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=25.62 E-value=80 Score=30.79 Aligned_cols=88 Identities=24% Similarity=0.304 Sum_probs=51.2
Q ss_pred hhHHHhhh---ccCCcce--eeCCCCCHHH-HHHHHHHhCCCCCCCcEEEEeccCh----------------hHHHhhCh
Q 013450 341 AHVEFLKG---VANPLGI--KVSDKMDPNE-LVKLIEILNPQNKPGRITIITRMGA----------------ENMRVKLP 398 (443)
Q Consensus 341 AHVeflrg---I~NPIGv--KvGP~~~p~e-lv~L~~~LnP~~~pGRlTLI~RmGa----------------~~v~~~LP 398 (443)
.||.++-+ |.|+-|+ .+-|.+..++ +.++++.|+= ... .+.++.=.+. +++.+.|.
T Consensus 98 ~~i~~~~~g~~v~~~~g~t~~~~~~~~~~~~~~~~~~~l~~-~~~-~~v~~~~~~~D~~GH~~~~~~~~~~ie~~D~~l~ 175 (252)
T PF01676_consen 98 GGIADFFGGMDVISVEGATGDVDPDMSAKEIAEAAIEALKK-DKY-DFVFVHVKGTDEAGHRGDPEAYIEAIERIDRFLG 175 (252)
T ss_dssp HHHHHHTTTEEEE--STSSCCGSTTTTHHHHHHHHHHHHHH-TTS-SEEEEEEEHHHHHHTTT-HHHHHHHHHHHHHHHH
T ss_pred ceeHHHhCCcccccccccccccccchhhHHHHHHHHHhhhc-ccC-CeEEEeecCcchhhccCCHHHHHHHHHHHHHHHH
Confidence 45665555 4444444 4456665555 3566777721 111 2555543322 34567899
Q ss_pred HHHHHHHHCCCceEEEcCCCCCCcccCCCCcccc
Q 013450 399 HLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTR 432 (443)
Q Consensus 399 ~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR 432 (443)
.|+++++..+-.++-.+| |||-.+....--||
T Consensus 176 ~l~~~~~~~~~~liiTaD--Hg~~~~~~~~~Ht~ 207 (252)
T PF01676_consen 176 RLLEALDKEDDLLIITAD--HGNDETMGHTSHTR 207 (252)
T ss_dssp HHHHHHHHTTEEEEEEES--SBSTTTSBSSS-B-
T ss_pred HHHHHHhcCCCEEEEECC--CCCccccCCcCCCC
Confidence 999999888888888887 99976654323344
No 75
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=25.60 E-value=1.5e+02 Score=31.12 Aligned_cols=9 Identities=33% Similarity=0.446 Sum_probs=5.3
Q ss_pred EcCCCCCCc
Q 013450 414 VSDPMHGNT 422 (443)
Q Consensus 414 ~cDPMHGNT 422 (443)
++|||||-+
T Consensus 167 vvd~~~G~~ 175 (443)
T cd03089 167 VVDAGNGAA 175 (443)
T ss_pred EEECCCCch
Confidence 456666654
No 76
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=25.41 E-value=50 Score=26.88 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=13.9
Q ss_pred CCceEEEcCCCCCCcccCC
Q 013450 408 GQIVTWVSDPMHGNTIKAP 426 (443)
Q Consensus 408 G~~ViW~cDPMHGNT~~~~ 426 (443)
..||+-.| |+|||...++
T Consensus 28 ~~PvtI~C-P~HG~~~~s~ 45 (60)
T PF05265_consen 28 ATPVTIRC-PKHGNFTCST 45 (60)
T ss_pred CCceEEEC-CCCCcEEecc
Confidence 45788888 9999986654
No 77
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=24.84 E-value=2.6e+02 Score=24.26 Aligned_cols=49 Identities=22% Similarity=0.199 Sum_probs=32.4
Q ss_pred ChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhhhhhhh
Q 013450 389 GAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRVNT 441 (443)
Q Consensus 389 Ga~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev 441 (443)
..+.+.+.|-.+|+.+++.|.+|+|+.=|..-|... -....|.++++|+
T Consensus 82 ~~~~~~~~l~~li~~~~~~~~~vil~~~~~~~~~~~----~~~~~~~~~~~~~ 130 (177)
T cd01822 82 PPDQTRANLRQMIETAQARGAPVLLVGMQAPPNYGP----RYTRRFAAIYPEL 130 (177)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccch----HHHHHHHHHHHHH
Confidence 345678889999999999999999986543332111 1134566666654
No 78
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=24.45 E-value=1.8e+02 Score=29.85 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=34.5
Q ss_pred HHHhhChHHHHHHHHCCCceEEE---cCCCCCCcccCCCCccccchhhhhhhhc
Q 013450 392 NMRVKLPHLIRAVRRSGQIVTWV---SDPMHGNTIKAPCGLKTRPFDSIRVNTD 442 (443)
Q Consensus 392 ~v~~~LP~LI~AV~~aG~~ViW~---cDPMHGNT~~~~~G~KTR~f~~Il~Ev~ 442 (443)
--++..|+|-+|--++|..=+.+ +||=+.=. -.++=+.-..|++++.+++
T Consensus 206 G~r~~v~~la~AAvA~GadGl~iEvHpdP~~Als-Dg~q~l~~~~~~~ll~~l~ 258 (264)
T PRK05198 206 GQREFVPVLARAAVAVGVAGLFIETHPDPDNALS-DGPNMLPLDKLEPLLEQLK 258 (264)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEEeCCCccccCC-CccccCCHHHHHHHHHHHH
Confidence 45788999999999999876655 46654332 1223466677888887764
No 79
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=24.21 E-value=88 Score=29.51 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=23.6
Q ss_pred hhHHHhhhc-cCCcceee--CCCCCHHHHHHHHHH
Q 013450 341 AHVEFLKGV-ANPLGIKV--SDKMDPNELVKLIEI 372 (443)
Q Consensus 341 AHVeflrgI-~NPIGvKv--GP~~~p~elv~L~~~ 372 (443)
.+|+.|+.+ ..|++||+ |++ +.++++++++.
T Consensus 162 ~~v~~~~~~~~~~v~ik~aGGik-t~~~~l~~~~~ 195 (203)
T cd00959 162 EDVKLMKEAVGGRVGVKAAGGIR-TLEDALAMIEA 195 (203)
T ss_pred HHHHHHHHHhCCCceEEEeCCCC-CHHHHHHHHHh
Confidence 566666555 56999999 466 89999999876
No 80
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=23.96 E-value=1.6e+02 Score=31.29 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=20.6
Q ss_pred CCChhHHHHHHHHHHH-----------HHHHHHHHhc
Q 013450 214 NPDPQRLIRAYCQSAA-----------TLNLLRAFAT 239 (443)
Q Consensus 214 ~PDP~Rml~AY~~Saa-----------TLn~lRa~~~ 239 (443)
.-||-|||+++..++. |+++|+....
T Consensus 129 ~eDPlRiLRa~RFaarl~~lgf~i~~~T~~~i~~~~~ 165 (409)
T PRK10885 129 AEDPLRVLRVARFAARFAHLGFRIAPETLALMREMVA 165 (409)
T ss_pred hhCHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHhhh
Confidence 5699999999988764 6777887654
No 81
>PF05598 DUF772: Transposase domain (DUF772); InterPro: IPR008490 This presumed domain is found at the N terminus of transposase insH and other related transposases.
Probab=23.70 E-value=1.4e+02 Score=23.52 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhhHHhhCCCCC
Q 013450 265 YRELAHRVDEALGFMSAAGLTVD 287 (443)
Q Consensus 265 y~~~~~~i~~al~Fm~a~G~~~~ 287 (443)
.+++++++.+.+.|+..||++.+
T Consensus 25 ~r~l~~~l~~~~~~r~~~g~~~~ 47 (77)
T PF05598_consen 25 DRELEERLRDNLSFRYFCGLSLE 47 (77)
T ss_pred HHHHHhhHhhhhHHHHHHhcccC
Confidence 57789999999999999996544
No 82
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=23.45 E-value=1.9e+02 Score=30.59 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=43.8
Q ss_pred hccCCcceeeCCCCCHHHHHHHHHHh--CCCCCCCcEEEEeccChhHHHhhChHHHHHHHH--CCCceEEEcCCCCCC
Q 013450 348 GVANPLGIKVSDKMDPNELVKLIEIL--NPQNKPGRITIITRMGAENMRVKLPHLIRAVRR--SGQIVTWVSDPMHGN 421 (443)
Q Consensus 348 gI~NPIGvKvGP~~~p~elv~L~~~L--nP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~--aG~~ViW~cDPMHGN 421 (443)
..+||+=+ |...+++.+.+.+++| ||+ .-+=+..|. -|..+.....-.++++.++ .+.|| ++| |-|+
T Consensus 282 ~paNPlDl--gg~a~~e~~~~aL~~ll~Dp~-VdaVlv~i~-ggi~~~~~vA~~Ii~a~~~~~~~kPv-vv~--l~G~ 352 (392)
T PRK14046 282 EPANFLDV--GGGASPERVAKAFRLVLSDRN-VKAILVNIF-AGINRCDWVAEGVVQAAREVGIDVPL-VVR--LAGT 352 (392)
T ss_pred CCcCCEEe--cCCCCHHHHHHHHHHHHcCCC-CCEEEEEcC-CCCCCHHHHHHHHHHHHHhcCCCCcE-EEE--cCCC
Confidence 46899999 6669999999999998 564 333443444 2222223445778888887 56666 666 3563
No 83
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=23.40 E-value=94 Score=31.33 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=29.4
Q ss_pred CeeEEecCCcc-chhhhcChhhHHHHHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcc
Q 013450 126 KAFLLQGGDCA-ESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPF 187 (443)
Q Consensus 126 ~AFlLQGGDCA-EsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~ 187 (443)
....|-+|=|+ ||- ..++++|..+. ..+.++++ +|-|. |||++.
T Consensus 14 ~~~~~iaGPC~vEs~------------e~~~~~a~~~~-~~g~~~~r----~g~~k-pRts~~ 58 (250)
T PRK13397 14 SKNNFIVGPCSIESY------------DHIRLAASSAK-KLGYNYFR----GGAYK-PRTSAA 58 (250)
T ss_pred CCCcEEeccCccCCH------------HHHHHHHHHHH-HcCCCEEE----ecccC-CCCCCc
Confidence 33455567775 432 23466666644 45889999 88887 999976
No 84
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=23.38 E-value=55 Score=32.83 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=26.5
Q ss_pred HHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCC
Q 013450 392 NMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPC 427 (443)
Q Consensus 392 ~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~ 427 (443)
.+.+.+=..+++..++|..+++++||..+.++-++.
T Consensus 177 ~i~~~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~ 212 (340)
T TIGR01463 177 LALDFVIAYAKAMVEAGADVIAIADPFASSDLISPE 212 (340)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEecCCccCccccCHH
Confidence 344555667777778999999999999765555553
No 85
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=23.33 E-value=92 Score=32.72 Aligned_cols=67 Identities=16% Similarity=0.293 Sum_probs=45.0
Q ss_pred hhHHHhhhccC--CcceeeCCCCCHHHHHHHHHHhCCCC-----C-C----CcEEEEeccChhHHHhhChHHHHHHHHCC
Q 013450 341 AHVEFLKGVAN--PLGIKVSDKMDPNELVKLIEILNPQN-----K-P----GRITIITRMGAENMRVKLPHLIRAVRRSG 408 (443)
Q Consensus 341 AHVeflrgI~N--PIGvKvGP~~~p~elv~L~~~LnP~~-----~-p----GRlTLI~RmGa~~v~~~LP~LI~AV~~aG 408 (443)
..|+.+|...+ ||+||.++..+++++.++++...++- - . +.+.++...|--.+ ..||.+.+++++.|
T Consensus 203 ~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~-~~L~~v~~~~~~~~ 281 (392)
T cd02808 203 QLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTE-LGLARAHQALVKNG 281 (392)
T ss_pred HHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHH-HHHHHHHHHHHHcC
Confidence 46888888877 99999999989999999998876542 1 1 12222233343233 56777777776554
No 86
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=23.33 E-value=2e+02 Score=27.20 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=40.1
Q ss_pred eeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEe-ccChhHHHhhChHHHHHHHHCCCc---eEEEc
Q 013450 355 IKVSDKMDPNELVKLIEILNPQNKPGRITIIT-RMGAENMRVKLPHLIRAVRRSGQI---VTWVS 415 (443)
Q Consensus 355 vKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~-RmGa~~v~~~LP~LI~AV~~aG~~---ViW~c 415 (443)
|=+|+...++++++.+...+|+- ..|+ .|.. .+ ..+..+|+++++.|.+ .||+.
T Consensus 116 i~LG~~vp~e~~v~~~~~~~pd~-----v~lS~~~~~-~~-~~~~~~i~~l~~~~~~~~v~i~vG 173 (197)
T TIGR02370 116 IDLGRDVPIDTVVEKVKKEKPLM-----LTGSALMTT-TM-YGQKDINDKLKEEGYRDSVKFMVG 173 (197)
T ss_pred EECCCCCCHHHHHHHHHHcCCCE-----EEEcccccc-CH-HHHHHHHHHHHHcCCCCCCEEEEE
Confidence 33799999999999999999964 3444 3333 33 3468999999999863 56665
No 87
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=23.07 E-value=92 Score=33.31 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=18.4
Q ss_pred CCChhHHHHHHHHHHH--------HHHHHHHH
Q 013450 214 NPDPQRLIRAYCQSAA--------TLNLLRAF 237 (443)
Q Consensus 214 ~PDP~Rml~AY~~Saa--------TLn~lRa~ 237 (443)
.-||-|||+|+..++. |++.|+..
T Consensus 167 ~eDPlRiLRa~Rfaa~lgf~i~~~T~~~i~~~ 198 (466)
T TIGR02692 167 GDDPLRMLRAARFVSQLGFEVAPRVRAAMTEM 198 (466)
T ss_pred hhChHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 4589999999998764 66766653
No 88
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=23.05 E-value=1.3e+02 Score=24.16 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=28.2
Q ss_pred CcEEEEeccC----hhHHHhhChHHHHHHHHCCCceEEEcC--CCCCCcc
Q 013450 380 GRITIITRMG----AENMRVKLPHLIRAVRRSGQIVTWVSD--PMHGNTI 423 (443)
Q Consensus 380 GRlTLI~RmG----a~~v~~~LP~LI~AV~~aG~~ViW~cD--PMHGNT~ 423 (443)
..+.+|+=.| .+.|+..+...++. ...--.|...++ |++||.-
T Consensus 28 ~~~~II~G~G~hS~~g~Lk~~V~~~L~~-~~~~~~v~~~~~~~~~~g~~G 76 (83)
T PF01713_consen 28 RELRIITGKGNHSKGGVLKRAVRRWLEE-GYQYEEVLAYRDAEPEDGNSG 76 (83)
T ss_dssp SEEEEE--STCTCCTSHHHHHHHHHHHH-THCCTTEEEEEE--CCCTGGG
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHHHHh-hhccchhheeeecCCCCCCCe
Confidence 7999999999 77766666666655 333445677755 8888864
No 89
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=22.83 E-value=5.1e+02 Score=27.28 Aligned_cols=38 Identities=21% Similarity=0.440 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCC
Q 013450 152 RILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVN 204 (443)
Q Consensus 152 ~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN 204 (443)
+.++++|..|.. .+.++++ |.+-|||++++ +|+|--..
T Consensus 132 ~~~~~~A~~lk~-~g~~~~r-----~~~~kpRtsp~---------~f~g~~~e 169 (360)
T PRK12595 132 EQVEAVAKALKA-KGLKLLR-----GGAFKPRTSPY---------DFQGLGVE 169 (360)
T ss_pred HHHHHHHHHHHH-cCCcEEE-----ccccCCCCCCc---------cccCCCHH
Confidence 345666666655 5778888 66777999986 47775433
No 90
>PLN02210 UDP-glucosyl transferase
Probab=22.72 E-value=1.4e+02 Score=31.87 Aligned_cols=80 Identities=18% Similarity=0.328 Sum_probs=50.8
Q ss_pred ccCCCCchhHHHhhhccCCcceeeCCCCCH----H-H--------------HHHHHHHhCCCCCCCcEEEEeccChhH--
Q 013450 334 RTRQLDGAHVEFLKGVANPLGIKVSDKMDP----N-E--------------LVKLIEILNPQNKPGRITIITRMGAEN-- 392 (443)
Q Consensus 334 RTRqlDgAHVeflrgI~NPIGvKvGP~~~p----~-e--------------lv~L~~~LnP~~~pGRlTLI~RmGa~~-- 392 (443)
.-.+|++..+++++.. .| -.=|||...+ + + =-++++-| +..+.+=++..=||--.
T Consensus 207 Tf~eLE~~~~~~l~~~-~~-v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl--d~~~~~svvyvsfGS~~~~ 282 (456)
T PLN02210 207 SFYELESEIIESMADL-KP-VIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWL--DKQARSSVVYISFGSMLES 282 (456)
T ss_pred CHHHHhHHHHHHHhhc-CC-EEEEcccCchhhcCcccccccccccccccccchHHHHHH--hCCCCCceEEEEecccccC
Confidence 3458888888888764 23 3668888631 1 0 01245566 33444445555577431
Q ss_pred HHhhChHHHHHHHHCCCceEEEcCC
Q 013450 393 MRVKLPHLIRAVRRSGQIVTWVSDP 417 (443)
Q Consensus 393 v~~~LP~LI~AV~~aG~~ViW~cDP 417 (443)
=.+.+-.+..+.+++|++++|++.|
T Consensus 283 ~~~~~~e~a~~l~~~~~~flw~~~~ 307 (456)
T PLN02210 283 LENQVETIAKALKNRGVPFLWVIRP 307 (456)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 2355778899999999999999875
No 91
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=22.62 E-value=50 Score=27.95 Aligned_cols=18 Identities=28% Similarity=0.658 Sum_probs=11.8
Q ss_pred HHHHHHHHHhccCCCccC
Q 013450 91 EELESVLKTLDDFPPIVF 108 (443)
Q Consensus 91 ~~L~~v~~~L~~~PPLV~ 108 (443)
.+|.+|.+.|+.|||++.
T Consensus 59 SQLKRiQRdlrGLPP~~~ 76 (76)
T PF08203_consen 59 SQLKRIQRDLRGLPPLVS 76 (76)
T ss_dssp HHHHHHHHHHHHS-----
T ss_pred HHHHHHHHhhCCCCCCCC
Confidence 468999999999999973
No 92
>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.
Probab=22.60 E-value=2.5e+02 Score=25.63 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhhHHhhCCCC
Q 013450 265 YRELAHRVDEALGFMSAAGLTV 286 (443)
Q Consensus 265 y~~~~~~i~~al~Fm~a~G~~~ 286 (443)
-..++.+|-++|.|++..|+..
T Consensus 108 ~~~~~~~i~~~l~~LH~~~i~H 129 (267)
T cd08229 108 VWKYFVQLCSALEHMHSRRVMH 129 (267)
T ss_pred HHHHHHHHHHHHHHHHHCCeec
Confidence 3456888999999999988643
No 93
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.43 E-value=78 Score=22.62 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=17.4
Q ss_pred cceeeCCCC-CHHHHHHHHHH
Q 013450 353 LGIKVSDKM-DPNELVKLIEI 372 (443)
Q Consensus 353 IGvKvGP~~-~p~elv~L~~~ 372 (443)
-||++.++. +-+||++++..
T Consensus 16 ~gi~~~~~~~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 16 HGIPVPKSAKTRDELLKLAKK 36 (38)
T ss_pred cCCCCCCCCCCHHHHHHHHHH
Confidence 589999999 99999998763
No 94
>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p
Probab=22.10 E-value=1.5e+02 Score=27.65 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhHHhhCCCC
Q 013450 266 RELAHRVDEALGFMSAAGLTV 286 (443)
Q Consensus 266 ~~~~~~i~~al~Fm~a~G~~~ 286 (443)
..++.+|-.+|.|++..|+..
T Consensus 98 ~~~~~qi~~~l~~lH~~~i~H 118 (279)
T cd06619 98 GRIAVAVVKGLTYLWSLKILH 118 (279)
T ss_pred HHHHHHHHHHHHHHHHCCEee
Confidence 457888999999999988743
No 95
>TIGR01942 pcnB poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).
Probab=21.90 E-value=1.9e+02 Score=31.20 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=38.0
Q ss_pred CCChhHHHHHHHHHHH--------HHHHHHHHhcCCcccccccccccccccccCchhhHHHHHHHH-----HHHHhhhHH
Q 013450 214 NPDPQRLIRAYCQSAA--------TLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHR-----VDEALGFMS 280 (443)
Q Consensus 214 ~PDP~Rml~AY~~Saa--------TLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~-----i~~al~Fm~ 280 (443)
.-||-|||+|...|+. |.+.|+..+.. ..+.+..+-+.|+..- -..++.+|.
T Consensus 165 ~EDPlRiLRAvRFaa~LgF~Ie~~T~~~I~~~a~~---------------L~~vs~eRI~~El~Kll~~~~~~~~l~~L~ 229 (410)
T TIGR01942 165 QEDPVRMLRALRFSVKLEFTIDESTARPIRESAPL---------------LKGIPPARLFEEILKLLFSGRSAALFRMLC 229 (410)
T ss_pred cccHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHH---------------HhcCCHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5699999999999986 89988875421 2223333334444332 246777888
Q ss_pred hhCCCC
Q 013450 281 AAGLTV 286 (443)
Q Consensus 281 a~G~~~ 286 (443)
.+|+-.
T Consensus 230 ~~gll~ 235 (410)
T TIGR01942 230 GYQLLE 235 (410)
T ss_pred HcCCHH
Confidence 888754
No 96
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=21.71 E-value=1.4e+02 Score=26.90 Aligned_cols=62 Identities=16% Similarity=0.276 Sum_probs=45.1
Q ss_pred CccchhhhcChhhHHHHHHHHHHHHHHHhhcCCCc----eEEeccccccCCCCCCCcccccCCeecccccCCc
Q 013450 134 DCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMP----VVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDN 202 (443)
Q Consensus 134 DCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~P----VVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~ 202 (443)
.-...|.+.+++...+-+.+...++..|....+-. ++.+|+.|||.-. -+-=.-+|-|+||.
T Consensus 44 ~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ni~~N~g~~agq~V~-------HlH~HvIPr~~~d~ 109 (138)
T COG0537 44 RHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYNIGINNGKAAGQEVF-------HLHIHIIPRYKGDD 109 (138)
T ss_pred cchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEecCcccCcCcc-------eEEEEEcCCcCCCC
Confidence 34567889999999999999988888887665433 6788999998532 11234578888764
No 97
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=21.56 E-value=2e+02 Score=31.05 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHhCCCCCCCcEE
Q 013450 360 KMDPNELVKLIEILNPQNKPGRIT 383 (443)
Q Consensus 360 ~~~p~elv~L~~~LnP~~~pGRlT 383 (443)
..++..+.++++.+|--+.|-|+.
T Consensus 316 ~l~~~~i~~ll~~~d~~r~p~r~~ 339 (417)
T PRK13298 316 YQSSKNIITLFSKIDAWRKPDRIK 339 (417)
T ss_pred cCCHHHHHHHHHHcCcccCHHHHH
Confidence 358899999999999998887653
No 98
>cd01636 FIG FIG, FBPase/IMPase/glpX-like domain. A superfamily of metal-dependent phosphatases with various substrates. Fructose-1,6-bisphospatase (both the major and the glpX-encoded variant) hydrolyze fructose-1,6,-bisphosphate to fructose-6-phosphate in gluconeogenesis. Inositol-monophosphatases and inositol polyphosphatases play vital roles in eukaryotic signalling, as they participate in metabolizing the messenger molecule Inositol-1,4,5-triphosphate. Many of these enzymes are inhibited by Li+.
Probab=21.29 E-value=42 Score=30.52 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=12.7
Q ss_pred CceEEEcCCCCCCccc
Q 013450 409 QIVTWVSDPMHGNTIK 424 (443)
Q Consensus 409 ~~ViW~cDPMHGNT~~ 424 (443)
-..+|++||+.|.+--
T Consensus 77 ~~~~WiiDPiDGT~nf 92 (184)
T cd01636 77 DEYTWVIDPIDGTKNF 92 (184)
T ss_pred CCeEEEEecccChHHH
Confidence 3578999999997644
No 99
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=20.82 E-value=1.4e+02 Score=31.06 Aligned_cols=89 Identities=25% Similarity=0.358 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCchh
Q 013450 265 YRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDGAH 342 (443)
Q Consensus 265 y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgAH 342 (443)
-+++.++.-+|-+....+|.| .+++...|--|+=.+=++.| |.|. |-.| +=.|+|- -
T Consensus 154 I~~ii~~f~~AA~rA~~AGfD-------GVEIh~ahGyLl~qFLSp~~N~RtDe-----YGGs-----lENR~Rf----~ 212 (362)
T PRK10605 154 IPGIVNDFRQAIANAREAGFD-------LVELHSAHGYLLHQFLSPSSNQRTDQ-----YGGS-----VENRARL----V 212 (362)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-------EEEEcccccchHHHhcCCcCCCCCCc-----CCCc-----HHHHHHH----H
Confidence 344555556666777778765 56888899877777766663 4443 4333 2367775 3
Q ss_pred HHHhhhccC-----CcceeeCCC---------CCHHH-HHHHHHHhC
Q 013450 343 VEFLKGVAN-----PLGIKVSDK---------MDPNE-LVKLIEILN 374 (443)
Q Consensus 343 VeflrgI~N-----PIGvKvGP~---------~~p~e-lv~L~~~Ln 374 (443)
.|-+++|+. .||||+.|. .+++| .+++|..|.
T Consensus 213 ~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~ 259 (362)
T PRK10605 213 LEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLG 259 (362)
T ss_pred HHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHH
Confidence 677777665 789999763 57788 688888885
No 100
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=20.78 E-value=1.4e+02 Score=31.36 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=20.9
Q ss_pred cEEEEeccChhHHHhhChHHHHHHHHCCCceEEEc
Q 013450 381 RITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVS 415 (443)
Q Consensus 381 RlTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~c 415 (443)
.+.++.=.+++-....+|.+++ +-|..|+++-
T Consensus 168 ~lkIvvd~~~G~~~~~~~~ll~---~lG~~v~~i~ 199 (441)
T cd05805 168 GLKVVIDYAYGVAGIVLPGLLS---RLGCDVVILN 199 (441)
T ss_pred CCeEEEECCCchHHHHHHHHHH---HcCCEEEEEe
Confidence 4555666666666677777775 4477777764
No 101
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=20.67 E-value=66 Score=30.06 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=25.3
Q ss_pred hCCCC---CCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcC
Q 013450 373 LNPQN---KPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSD 416 (443)
Q Consensus 373 LnP~~---~pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cD 416 (443)
+|++| .||.+.+ -|++.+-..+-.|+++.+ |.+|+|+.|
T Consensus 7 ID~Qndf~~~g~l~~---~~~~~~v~~i~~l~~~ar--g~~Vi~~~~ 48 (196)
T cd01011 7 VDVQNDFCPGGALAV---PGGDAIVPLINALLSLFQ--YDLVVATQD 48 (196)
T ss_pred EcCCCCCCCCCcccC---CCHHHHHHHHHHHHHhcC--CCEEEEecC
Confidence 45665 3576533 356666555556666655 899999996
No 102
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase. This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff.
Probab=20.30 E-value=89 Score=34.20 Aligned_cols=50 Identities=26% Similarity=0.457 Sum_probs=27.7
Q ss_pred hhhcChhhHH-HHHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCC
Q 013450 139 FKEFNANNIR-DTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGD 201 (443)
Q Consensus 139 F~e~~~~~I~-~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD 201 (443)
...++++.|| .|+|+|.+|-.+ .-.. .-|| =|||.+-+ ++|..+|.||-+
T Consensus 251 P~~~~a~~ir~eK~kVL~~~r~~-~~~~-~~~v-----rGQY~~g~------~~g~~~~gY~~e 301 (482)
T TIGR00871 251 PASFDADSIRDEKVKVLKALRPI-DPDD-NNVV-----RGQYGAGE------IGGVSVPGYLEE 301 (482)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCC-Cccc-CceE-----eccccCCC------CCCcCCCCccCC
Confidence 3444555555 356665544311 0000 2234 59997654 468899999976
No 103
>TIGR00140 hupD hydrogenase expression/formation protein. C at 64 and 67 are believed to be metal binding. Postulated to be involved in processing or hydrogenase. Superfamily suggests that it is a peptidase/protease.
Probab=20.20 E-value=2.7e+02 Score=24.29 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHhCCCCCCCcEEEEe-------ccCh---hHHHhhChHHHHHHHH
Q 013450 360 KMDPNELVKLIEILNPQNKPGRITIIT-------RMGA---ENMRVKLPHLIRAVRR 406 (443)
Q Consensus 360 ~~~p~elv~L~~~LnP~~~pGRlTLI~-------RmGa---~~v~~~LP~LI~AV~~ 406 (443)
.+++.+++++++.+ .+.|.++++|. .||. ..|++.++.+++.|++
T Consensus 74 ~~~l~~~L~~~~~~--~~~p~~~~ivgi~~~~~~~~g~~LS~~v~~av~~~~~~i~~ 128 (134)
T TIGR00140 74 QTGFQEVLALAELL--GHLPKELVLIGVQPEELEDYGGSLSPEVAEAIPPAIEIALA 128 (134)
T ss_pred cCCHHHHHHHHHHc--CCCCCeEEEEEeeEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 67889999999975 45676777765 5764 5788888888888765
No 104
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.11 E-value=1.4e+02 Score=30.44 Aligned_cols=92 Identities=23% Similarity=0.415 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccccccccCCCCCcccCCCCceeeccccCCCCchhHHH
Q 013450 266 RELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEF 345 (443)
Q Consensus 266 ~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef 345 (443)
+++.+..-+|-.....+|.| .++|-..|--|+=.+=.+.|-+ .+.+ |-.| +=.|+|.+ +|-
T Consensus 145 ~~~i~~~~~aA~ra~~aGfD-------gVeih~a~gyLl~qFlsp~~N~--R~D~-yGGs-----lenR~rf~----~Ei 205 (338)
T cd04733 145 EDVIDRFAHAARLAQEAGFD-------GVQIHAAHGYLLSQFLSPLTNK--RTDE-YGGS-----LENRARLL----LEI 205 (338)
T ss_pred HHHHHHHHHHHHHHHHcCCC-------EEEEchhhhhHHHHhcCCcCCC--CCcc-CCCC-----HHHHHHHH----HHH
Confidence 34555555566666777764 4578888877777666666421 2233 4444 33788853 455
Q ss_pred hhhcc------CCcceeeCC------CCCHHHHHHHHHHhCCC
Q 013450 346 LKGVA------NPLGIKVSD------KMDPNELVKLIEILNPQ 376 (443)
Q Consensus 346 lrgI~------NPIGvKvGP------~~~p~elv~L~~~LnP~ 376 (443)
++.|+ -||+||+.+ ..+++|.+++++.|.-.
T Consensus 206 I~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~ 248 (338)
T cd04733 206 YDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEA 248 (338)
T ss_pred HHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHc
Confidence 55555 389999974 57999999999999643
No 105
>KOG2544 consensus Dihydropteroate synthase/7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase/Dihydroneopterin aldolase [Coenzyme transport and metabolism]
Probab=20.09 E-value=1.1e+02 Score=34.24 Aligned_cols=76 Identities=37% Similarity=0.737 Sum_probs=52.4
Q ss_pred cCchhhHHHHHHHHHHHHh-hhHHhhCCCCCCCCCCccceeecccccccccccccccccCCCCCcccCCCCceeeccccC
Q 013450 258 HSEQGDRYRELAHRVDEAL-GFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTR 336 (443)
Q Consensus 258 ~s~~~~~y~~~~~~i~~al-~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTR 336 (443)
.|..|+|+. .|++|| +.|+.-|+.. |-|-+| ||.. | ..+-|.+|
T Consensus 258 GSNIGdrf~----~iq~AL~~L~k~~gi~v-----------~~~S~l---yEte-----P------------my~kDQp~ 302 (711)
T KOG2544|consen 258 GSNIGDRFN----NIQEALQRLMKEKGIKV-----------TRHSCL---YETE-----P------------MYVKDQPR 302 (711)
T ss_pred ccchhHHHH----HHHHHHHHHHHhccEEE-----------eeeccc---cccC-----C------------ceecCCch
Confidence 466788875 568999 6788776642 223333 3422 1 12337788
Q ss_pred CCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEE
Q 013450 337 QLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRIT 383 (443)
Q Consensus 337 qlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlT 383 (443)
.+.|+ ||+--.++|.||+++|..+. .|-||+.
T Consensus 303 FlNg~-------------v~~eT~l~P~eLL~~ckkIE--~emgR~k 334 (711)
T KOG2544|consen 303 FLNGA-------------VRGETKLTPHELLKVCKKIE--EEMGRVK 334 (711)
T ss_pred hhcce-------------EEEEeecCHHHHHHHHHHHH--HHhhhhh
Confidence 77775 89999999999999999996 6667765
Done!