Query 013450
Match_columns 443
No_of_seqs 147 out of 461
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 10:48:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rzi_A Probable 3-deoxy-D-arab 100.0 2E-177 6E-182 1344.6 28.6 364 73-442 26-392 (462)
2 1n8f_A DAHP synthetase; (beta/ 96.8 0.0077 2.6E-07 60.9 11.6 108 326-438 157-286 (350)
3 3tqk_A Phospho-2-dehydro-3-deo 96.8 0.14 4.8E-06 51.8 20.1 232 111-439 32-285 (346)
4 1of8_A Phospho-2-dehydro-3-deo 96.4 0.036 1.2E-06 56.4 13.4 212 112-424 51-287 (370)
5 3nvt_A 3-deoxy-D-arabino-heptu 90.4 0.23 7.9E-06 50.4 4.7 89 326-421 226-322 (385)
6 2nwr_A 2-dehydro-3-deoxyphosph 87.7 0.21 7E-06 48.5 2.1 86 327-421 96-187 (267)
7 3sz8_A 2-dehydro-3-deoxyphosph 85.1 0.6 2.1E-05 45.9 3.9 89 326-420 111-205 (285)
8 1zco_A 2-dehydro-3-deoxyphosph 83.1 2.7 9.4E-05 40.2 7.4 92 326-423 107-205 (262)
9 3fs2_A 2-dehydro-3-deoxyphosph 76.6 0.96 3.3E-05 44.8 1.9 89 326-420 132-224 (298)
10 1o60_A 2-dehydro-3-deoxyphosph 76.6 1.7 5.8E-05 42.5 3.7 90 327-422 110-205 (292)
11 1vs1_A 3-deoxy-7-phosphoheptul 75.7 3.1 0.00011 40.3 5.2 93 326-422 122-219 (276)
12 3pzs_A PM kinase, pyridoxamine 66.3 4.2 0.00015 38.2 3.7 66 357-422 53-120 (289)
13 3zs7_A Pyridoxal kinase; trans 66.1 3.4 0.00012 39.5 3.1 65 358-422 53-123 (300)
14 2qkf_A 3-deoxy-D-manno-octulos 62.2 5.4 0.00019 38.6 3.7 90 327-422 107-202 (280)
15 1vr6_A Phospho-2-dehydro-3-deo 56.3 13 0.00044 37.4 5.3 92 326-422 190-287 (350)
16 3tml_A 2-dehydro-3-deoxyphosph 52.8 4.6 0.00016 39.7 1.4 90 326-420 108-206 (288)
17 4a5z_A MITD1, MIT domain-conta 50.6 35 0.0012 31.2 6.7 68 364-431 52-125 (163)
18 2yxt_A Pyridoxal kinase; beta 49.5 16 0.00053 34.2 4.4 62 359-420 55-117 (312)
19 2ymb_A MITD1, MIT domain-conta 47.2 34 0.0012 33.2 6.5 91 319-431 116-213 (257)
20 3p0t_A Uncharacterized protein 45.7 1.1E+02 0.0036 25.6 8.7 96 125-232 40-135 (138)
21 3hgj_A Chromate reductase; TIM 42.6 15 0.00051 36.0 3.2 99 267-385 149-259 (349)
22 3oix_A Putative dihydroorotate 39.7 22 0.00077 35.2 4.0 27 351-377 194-220 (345)
23 1jub_A Dihydroorotate dehydrog 38.2 62 0.0021 30.4 6.7 44 343-387 147-194 (311)
24 2cc0_A Acetyl-xylan esterase; 35.8 65 0.0022 28.3 6.1 55 362-422 135-189 (195)
25 3tml_A 2-dehydro-3-deoxyphosph 32.8 40 0.0014 33.0 4.5 55 125-201 15-71 (288)
26 1ccw_A Protein (glutamate muta 31.6 62 0.0021 27.4 5.0 54 356-415 36-91 (137)
27 2o6l_A UDP-glucuronosyltransfe 31.2 37 0.0013 28.2 3.5 53 362-418 7-61 (170)
28 3ohe_A Histidine triad (HIT) p 30.8 2.5E+02 0.0084 23.9 9.8 84 135-226 43-128 (137)
29 2rf4_B DNA-directed RNA polyme 30.5 21 0.00071 29.8 1.7 23 90-112 61-83 (87)
30 4ef8_A Dihydroorotate dehydrog 30.3 20 0.00067 35.8 1.9 25 351-375 194-218 (354)
31 3kru_A NADH:flavin oxidoreduct 30.1 51 0.0018 32.5 4.8 96 267-385 140-249 (343)
32 2e6f_A Dihydroorotate dehydrog 30.0 27 0.00091 33.0 2.7 32 343-374 149-184 (314)
33 3gr7_A NADPH dehydrogenase; fl 30.0 31 0.0011 33.8 3.2 100 267-386 141-250 (340)
34 1z41_A YQJM, probable NADH-dep 29.2 72 0.0025 30.9 5.6 101 268-388 142-252 (338)
35 2yxb_A Coenzyme B12-dependent 28.8 1.2E+02 0.0042 26.3 6.6 54 357-416 52-107 (161)
36 1miw_A TRNA CCA-adding enzyme; 28.0 70 0.0024 32.1 5.4 62 216-289 154-225 (404)
37 3hp4_A GDSL-esterase; psychrot 27.4 72 0.0025 26.3 4.7 47 391-441 86-132 (185)
38 3l5l_A Xenobiotic reductase A; 26.2 29 0.001 34.2 2.3 101 266-386 154-267 (363)
39 1vfg_A A-adding enzyme, poly A 25.9 76 0.0026 31.5 5.2 60 216-286 149-219 (390)
40 3i3w_A Phosphoglucosamine muta 25.2 94 0.0032 31.4 5.9 11 412-422 174-184 (443)
41 3kdg_A DNA mismatch repair pro 24.9 53 0.0018 29.7 3.5 50 344-394 136-190 (197)
42 2o14_A Hypothetical protein YX 24.1 3.1E+02 0.01 26.7 9.1 63 378-441 229-304 (375)
43 4e9i_A Glucose-6-phosphate 1-d 23.4 36 0.0012 36.4 2.4 59 114-201 295-354 (541)
44 2ddm_A Pyridoxine kinase; pyri 23.2 85 0.0029 28.7 4.7 62 359-420 66-129 (283)
45 1f76_A Dihydroorotate dehydrog 22.8 45 0.0015 31.9 2.8 25 350-374 211-235 (336)
46 1csn_A Casein kinase-1; phosph 21.8 86 0.003 27.7 4.3 46 264-311 107-159 (298)
47 3ncv_A DNA mismatch repair pro 21.4 60 0.0021 30.1 3.3 53 342-395 157-214 (220)
48 3zwt_A Dihydroorotate dehydrog 20.9 48 0.0016 33.1 2.6 38 350-388 220-257 (367)
49 3ksv_A Uncharacterized protein 20.6 4E+02 0.014 22.7 9.5 92 125-226 46-141 (149)
50 3rsc_A CALG2; TDP, enediyne, s 20.3 80 0.0027 29.7 3.9 51 381-433 22-72 (415)
No 1
>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} SCOP: c.1.10.8 PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A*
Probab=100.00 E-value=1.9e-177 Score=1344.61 Aligned_cols=364 Identities=45% Similarity=0.792 Sum_probs=357.8
Q ss_pred ccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcChhhHHHHHH
Q 013450 73 VDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFR 152 (443)
Q Consensus 73 p~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQGGDCAEsF~e~~~~~I~~k~~ 152 (443)
++|||++|++|||+|| +++|+.|+++|+++|||||++||++||++||+||+|+|||||||||||+|++|++++|++|++
T Consensus 26 ~~sWr~~pa~QqP~yp-~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~La~va~G~AFlLQGGDCAEsF~~~~~~~ir~k~~ 104 (462)
T 3rzi_A 26 LDAALAKPAAQQPTWP-ADQALAMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVR 104 (462)
T ss_dssp HHHHHTSCCTTCCCCC-HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHTTSCEEEEEECSSCCSTTCCHHHHHHHHH
T ss_pred ccchhhCCcccCCCCC-HHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHCCCEEEEeCccccCChhhcChHHHHHHHH
Confidence 4799999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 013450 153 ILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLN 232 (443)
Q Consensus 153 ~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg~~f~~~aR~PDP~Rml~AY~~SaaTLn 232 (443)
+|+|||+||+||+++|||||||||||||||||+++| |++||||||||||+++||+++|+|||+|||+||+||++|||
T Consensus 105 ~llqMa~vLt~g~~~PVVkvGRiAGQfAKPRSs~~E---Gv~LPsYRGD~VNg~~f~~~aR~PDP~Rll~aY~~SaatlN 181 (462)
T 3rzi_A 105 ALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADID---ALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMN 181 (462)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEECSCCCCCCCSCSBC---TTSSBCCCCTTTSCSSSSHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCeEEecccccccCCCCCCCcC---CCcccccCCccccCCCCChhhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccccccccccccccccCchhhHHHHHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccccc
Q 013450 233 LLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT 312 (443)
Q Consensus 233 ~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~alt 312 (443)
+||+|++|||||||++|+||++|+++|+.+++|++++++|++||+||++||++.+ .+.+++||||||||||+||+|||
T Consensus 182 llRa~~~gG~Adl~~~~~W~~~fv~~s~~~~~y~~la~~i~~al~Fm~a~G~~~~--~l~~~~~ytSHEaLlL~YE~alt 259 (462)
T 3rzi_A 182 LVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADR--NLQTAEIYASHEALVLDYERAML 259 (462)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTTCCCG--GGSCCCCEEEEECCCHHHHHHTE
T ss_pred HHHHhccCChhhhhccccchhhhcccChhhhHHHHHHHHHHHHHHHHHHcCCCcc--cccccceeechHhhccchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999987 67899999999999999999999
Q ss_pred ccc---CCCCCcccCCCCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 013450 313 RLD---STSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMG 389 (443)
Q Consensus 313 R~d---~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmG 389 (443)
|.| +.+|.|||||||||||||||||+|||||||||||+|||||||||+|+|+||++||++|||+|+|||||||+|||
T Consensus 260 R~d~~~~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~p~elv~L~~~LnP~~epGRlTLI~RmG 339 (462)
T 3rzi_A 260 RLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMG 339 (462)
T ss_dssp EECCC----CCEEETTCSEEEECTTTCCTTSHHHHHHHHCCSCEEEEECTTCCHHHHHHHHHHHCTTCCTTSEEEEECCC
T ss_pred cccccCCCCCCccccccccceeccccCCCCccHHHHHhcCCCCeeEeECCCCCHHHHHHHHHHhCCCCCCCeEEEEEccC
Confidence 999 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhhhhhhhc
Q 013450 390 AENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRVNTD 442 (443)
Q Consensus 390 a~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~ 442 (443)
|+||+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||+
T Consensus 340 a~kv~~~LP~li~aV~~~G~~VvW~cDPMHGNT~~~~~G~KTR~fd~Il~Ev~ 392 (462)
T 3rzi_A 340 NHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIVDEVQ 392 (462)
T ss_dssp TTTHHHHHHHHHHHHHHTSCCCEEEECCSTTSEEECTTSCEEEBHHHHHHHHH
T ss_pred CchhhhhHHHHHHHHHHCCCCeEEEeCCCCCCceeCCCCCccCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999996
No 2
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*
Probab=96.81 E-value=0.0077 Score=60.90 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=74.6
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHh-CCC-----------------CCCCcEEEEec
Q 013450 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEIL-NPQ-----------------NKPGRITIITR 387 (443)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~L-nP~-----------------~~pGRlTLI~R 387 (443)
.-++|||-||-+ .-.|.+...|+.-|||+|=|-..++++.+.-+..- .|+ ..| .+-||-|
T Consensus 157 vd~~qIGAR~~e-sq~hr~~asg~~~PVg~Kngt~g~i~~~l~Ai~aa~~~h~fl~~~~~G~~~~v~t~GN~-~~~lilR 234 (350)
T 1n8f_A 157 MSWGAIGARTTE-SQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHSAIVNTSGNG-DCHIILR 234 (350)
T ss_dssp CSEEEECTTTTT-CHHHHHHHHTCSSCEEEECCTTCCSHHHHHHHHHHTSCCEEEEECTTSBEEEEEECCCS-CEEEEEC
T ss_pred CcEEEECCcccc-CHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHHHhCCceeeeeCCCCcEEEEECCCCC-CEEEEEC
Confidence 459999999876 55899999999999999999999999999883331 222 122 4678888
Q ss_pred cChhHHHhhCh----HHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhhhh
Q 013450 388 MGAENMRVKLP----HLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIR 438 (443)
Q Consensus 388 mGa~~v~~~LP----~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il 438 (443)
-|.. ...+. .+.+.+++.|.|.-=++||=|||..+. .|-..+-+.+|.
T Consensus 235 G~~~--~ny~~~di~~~~~~l~~~~lp~~VivD~SH~ns~k~-~~~Q~~vv~~la 286 (350)
T 1n8f_A 235 GGKE--PNYSAKHVAEVKEGLNKAGLPAQVMIDFSHANSSKQ-FKKQMDVCADVC 286 (350)
T ss_dssp CSSS--CCCSHHHHHHHHHHHHHTTCCCCEEEECSGGGTTTC-GGGHHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHHHHHHHcCCCCeEEEECCCcccCcc-ccccHHHHHHHH
Confidence 6642 33333 344456778998444799999996544 233333333333
No 3
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=96.75 E-value=0.14 Score=51.76 Aligned_cols=232 Identities=20% Similarity=0.278 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHhCCC--eeEEecCCccchhhhcChhhHHHHHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCccc
Q 013450 111 EARSLEERLAEAAMGK--AFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFE 188 (443)
Q Consensus 111 Ei~~Lr~~La~vA~G~--AFlLQGGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E 188 (443)
-|..-|+.+.++-.|+ .|++=.|=|+=- +++.+.+-.+-|..++.-+.. ...-|.| |-|-|||++
T Consensus 32 ~v~~~R~~i~~Il~G~d~rllVIaGPCSie----d~eq~leyA~~Lk~~~~~~~d-~l~~vmR-----~y~~KPRTs--- 98 (346)
T 3tqk_A 32 TVRKSRKEIANIIHGNDDRVAVVVGPCSIH----DPAAAIEYATKLKEQVKKFHK-DILIIMR-----VYFEKPRTT--- 98 (346)
T ss_dssp HHHHHHHHHHHHHHTSSCSEEEEEECSSCS----CHHHHHHHHHHHHHHHHHHTT-TEEEEEE-----CCCCCCCSS---
T ss_pred HHHHHHHHHHHHHcCCCCCEEEEEecCccC----CHHHHHHHHHHHHHHHhhhcc-cceEEee-----ecccCCCCC---
Confidence 3455678889998886 599999999643 445555555555555543321 1122444 558899987
Q ss_pred ccCCeecccccCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccCchhhHHHHH
Q 013450 189 EKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYREL 268 (443)
Q Consensus 189 ~~~G~~LPsYRGD~VNg~~f~~~aR~PDP~Rml~AY~~SaaTLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~ 268 (443)
+.|.| ++|+|..+-. .| +. .-|..+|.|.. +
T Consensus 99 -------~g~kG-L~nDP~ld~s---~~---i~-------~GL~~~R~ll~---------------------------~- 129 (346)
T 3tqk_A 99 -------IGWKG-FINDPDLDNS---YN---IN-------KGLRLARNLLS---------------------------D- 129 (346)
T ss_dssp -------CSCCC-TTTCTTSSSC---CC---HH-------HHHHHHHHHHH---------------------------H-
T ss_pred -------cCccc-cccCCCCCCC---cc---HH-------HHHHHHHHHHH---------------------------H-
Confidence 34666 5677554422 11 22 23343333210 0
Q ss_pred HHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccccccccCCCCCcccCCCCceeeccccCCCCchhHHHhhh
Q 013450 269 AHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKG 348 (443)
Q Consensus 269 ~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrg 348 (443)
....|+... + |-. |+.+-.|+.----+.|||-||-|= --|-|..+|
T Consensus 130 ----------~~e~GLpia------t-------------E~l----d~~~~qyv~dlvs~~aIGARt~en-q~hre~asg 175 (346)
T 3tqk_A 130 ----------LTNMGLPCA------T-------------EFL----DVITPQYFAELITWGAIGARTVES-QVHRELASG 175 (346)
T ss_dssp ----------HHHTTCCEE------E-------------ECC----SSSGGGGTGGGCSEEEECGGGTTC-HHHHHHHTT
T ss_pred ----------HHhcCCCEE------E-------------Eec----CcCCHHHHHHHhheeeeCcccccC-HHHHHHhcC
Confidence 122333211 1 111 222222333334488999999984 799999999
Q ss_pred ccCCcceeeCCCCCHHHHHHHHHH-hCCCC-----CCCcEE-----------EEeccChh---HHHhhChHHHHHHHHCC
Q 013450 349 VANPLGIKVSDKMDPNELVKLIEI-LNPQN-----KPGRIT-----------IITRMGAE---NMRVKLPHLIRAVRRSG 408 (443)
Q Consensus 349 I~NPIGvKvGP~~~p~elv~L~~~-LnP~~-----~pGRlT-----------LI~RmGa~---~v~~~LP~LI~AV~~aG 408 (443)
+.-|||+|=|-+.+.++.+.-+.. =+|+. +.|+.. +|-|=|.. -=.+.+-...+..+++|
T Consensus 176 ~s~PVg~Kngt~gti~~ai~Ai~aa~~pH~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~~gpNY~~~~v~~a~~~l~k~~ 255 (346)
T 3tqk_A 176 LSASIGFKNATNGDVQVAVDAVKSATYPHHFLSTTKSGSTAIFATKGNQNGHVILRGGASGPNFSKEHVDDCIAKLKKAD 255 (346)
T ss_dssp CSSEEEEECCTTCCSHHHHHHHHHHTSCCEEEEECTTSCEEEEECCCCSCEEEEECCCTTCCCCSHHHHHHHHHHHHHTT
T ss_pred CCCceEEeCCCCCchHHHhhHHHHHhCCceEEeeCCCCcEEEEECCCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHhCC
Confidence 999999999999999887766653 36764 556655 45576642 12344556778888999
Q ss_pred CceEEEcCCCCCCcccCCCCccccchhhhhh
Q 013450 409 QIVTWVSDPMHGNTIKAPCGLKTRPFDSIRV 439 (443)
Q Consensus 409 ~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~ 439 (443)
.+.--|.|.=|||..|-. -...+-+.+|+.
T Consensus 256 l~~~imVDcSH~NS~K~~-~~Q~~V~~~v~~ 285 (346)
T 3tqk_A 256 INTKVMIDCSHGNSQKDH-SKQISVLADICE 285 (346)
T ss_dssp CCCCEEEESSHHHHTTCG-GGHHHHHHHHHH
T ss_pred CCCeEEEecCcccccccH-HHHHHHHHHHHH
Confidence 999999999999986642 233344444443
No 4
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=96.40 E-value=0.036 Score=56.44 Aligned_cols=212 Identities=20% Similarity=0.283 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhCC--CeeEEecCCccchhhhcChhhHHHHHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccc
Q 013450 112 ARSLEERLAEAAMG--KAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEE 189 (443)
Q Consensus 112 i~~Lr~~La~vA~G--~AFlLQGGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~ 189 (443)
|..=|+.+.++-.| +.|++=.|=|.=- +++.+.+-.+-|..++.-+ +.++++|- =+-|-|||++
T Consensus 51 v~~~r~~i~~Il~g~d~rllvIaGPCSIe----d~e~aleyA~~Lk~~~~~~--~d~l~iVm----R~yfeKPRTs---- 116 (370)
T 1of8_A 51 AKRGRREAIDIITGKDDRVLVIVGPCSIH----DLEAAQEYALRLKKLSDEL--KGDLSIIM----RAYLEKPRTT---- 116 (370)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEEECSCCC----CHHHHHHHHHHHHHHHHHH--TTTEEEEE----ECCCCCCCSS----
T ss_pred HHHHHHHHHhhhcCCCCCeEEEEeCCcCC----CHHHHHHHHHHHHHHHHhh--ccCeEEEE----EeccccccCC----
Confidence 33447788888887 4799999999532 4445555555555555544 34566553 5679999998
Q ss_pred cCCeecccccCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccCchhhHHHHHH
Q 013450 190 KNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELA 269 (443)
Q Consensus 190 ~~G~~LPsYRGD~VNg~~f~~~aR~PDP~Rml~AY~~SaaTLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~ 269 (443)
|-|+|= ||++..+-.-|- ..-|..+|.+.
T Consensus 117 ------~GwKGl-i~dP~ld~Sf~g-------------~~GL~i~r~ll------------------------------- 145 (370)
T 1of8_A 117 ------VGWKGL-INDPDVNNTFNI-------------NKGLQSARQLF------------------------------- 145 (370)
T ss_dssp ------SSCCCT-TTCTTSSSCCCH-------------HHHHHHHHHHH-------------------------------
T ss_pred ------cccccc-ccCCCcCCCcCH-------------HHHHHHHHHHH-------------------------------
Confidence 235553 677655433322 22344434311
Q ss_pred HHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccccccccCCCCCcccCCCCce---eeccccCCCCchhHHHh
Q 013450 270 HRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFL---WVGERTRQLDGAHVEFL 346 (443)
Q Consensus 270 ~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~altR~d~~~g~~Y~~SaH~l---WIGeRTRqlDgAHVefl 346 (443)
.-+...|+... ++| |+ +.+-.|. +-++ |||-||-+= --|.|..
T Consensus 146 -------~~v~e~GlPva------TEv---ld--------------~~~~qyv---~Dllsw~aIGARt~es-q~hre~A 191 (370)
T 1of8_A 146 -------VNLTNIGLPIG------SEM---LD--------------TISPQYL---ADLVSFGAIGARTTES-QLHRELA 191 (370)
T ss_dssp -------HHHHTTTCCEE------EEC---CS--------------SSTHHHH---GGGCSEEEECTTTTTC-HHHHHHH
T ss_pred -------HHHHHcCCceE------Eee---cC--------------cccHHHH---HHHHhhccccCccccc-HHHHHHH
Confidence 00112333211 111 11 1111111 3344 999999875 9999999
Q ss_pred hhccCCcceeeCCCCCHHHHHHHHHH-hCCCC-----CCC-----------cEEEEeccCh---hHHHhhChHHHHHHHH
Q 013450 347 KGVANPLGIKVSDKMDPNELVKLIEI-LNPQN-----KPG-----------RITIITRMGA---ENMRVKLPHLIRAVRR 406 (443)
Q Consensus 347 rgI~NPIGvKvGP~~~p~elv~L~~~-LnP~~-----~pG-----------RlTLI~RmGa---~~v~~~LP~LI~AV~~ 406 (443)
+|+.-|||+|=|-..++++.+.-+.. =.|+. ..| .+-||-|-|. .-=...+......+++
T Consensus 192 sgl~~PVg~Kngt~g~i~~~~~Ai~aa~~~H~Fl~v~~~G~a~~v~t~GN~~~~lilRG~~~~~nY~~~~vd~~~~~l~~ 271 (370)
T 1of8_A 192 SGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVAEAKAQLPA 271 (370)
T ss_dssp HTCSSCEEEECCTTSCSHHHHHHHHHHTSCCEEEEECTTSBEEEEEECCCSCEEEEECCCTTCCCCSHHHHHHHHHHCCT
T ss_pred hcCCCeEEEcCCCCCCHHHHHHHHHHHhCCceeeeeCCCCcEEEEEcCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999877443 12322 111 4678888774 1223445555556677
Q ss_pred CCCceEEEcCCCCCCccc
Q 013450 407 SGQIVTWVSDPMHGNTIK 424 (443)
Q Consensus 407 aG~~ViW~cDPMHGNT~~ 424 (443)
.|.+| ++||=|||..+
T Consensus 272 ~~~pV--ivD~SHans~k 287 (370)
T 1of8_A 272 GSNGL--MIDYSHGNSNK 287 (370)
T ss_dssp TCCCE--EEESSGGGGTS
T ss_pred hCCCE--EEeCcccchhh
Confidence 78775 59999998754
No 5
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=90.35 E-value=0.23 Score=50.41 Aligned_cols=89 Identities=17% Similarity=0.266 Sum_probs=67.7
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec-------cChhHHHhhCh
Q 013450 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR-------MGAENMRVKLP 398 (443)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R-------mGa~~v~~~LP 398 (443)
..+++||-|+=+ +-.+++.+.+..-||.+|=|-..+++|+..-++.+-=... .+|+|.-| ++.+.+ -|-
T Consensus 226 vd~lkIgs~~~~-n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn-~~i~L~~rG~s~yp~~~~~~l--dl~ 301 (385)
T 3nvt_A 226 VDVIQIGARNMQ-NFELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGN-GKIILCERGIRTYEKATRNTL--DIS 301 (385)
T ss_dssp CSEEEECGGGTT-CHHHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTTTC-CCEEEEECCBCCSCCSSSSBC--CTT
T ss_pred CCEEEECccccc-CHHHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHcCC-CeEEEEECCCCCCCCCCcccc--CHH
Confidence 458999999854 4689999999999999999999999999999999943322 26999988 233333 233
Q ss_pred HHHHHHHH-CCCceEEEcCCCCCC
Q 013450 399 HLIRAVRR-SGQIVTWVSDPMHGN 421 (443)
Q Consensus 399 ~LI~AV~~-aG~~ViW~cDPMHGN 421 (443)
.+ ..+++ .|.|| ++||=||.
T Consensus 302 ~i-~~lk~~~~lpV--~~D~th~~ 322 (385)
T 3nvt_A 302 AV-PILKKETHLPV--MVDVTHST 322 (385)
T ss_dssp HH-HHHHHHBSSCE--EEEHHHHH
T ss_pred HH-HHHHHhcCCCE--EEcCCCCC
Confidence 33 33444 78887 99999985
No 6
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=87.66 E-value=0.21 Score=48.48 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=61.7
Q ss_pred Cceeecc---ccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC---hhHHHhhChHH
Q 013450 327 HFLWVGE---RTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMG---AENMRVKLPHL 400 (443)
Q Consensus 327 H~lWIGe---RTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmG---a~~v~~~LP~L 400 (443)
-++|||- ||-. ....+++..-||++|=|-..+++|+..-++++.-...+ .+.||-|=+ .++..--|- -
T Consensus 96 d~~~IgA~~~rn~~----ll~~~a~~~~PV~lK~G~~~t~~e~~~Av~~i~~~GN~-~i~L~~rG~~~~y~~~~~dl~-~ 169 (267)
T 2nwr_A 96 DIIQIPAFLCRQTD----LLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAK-EIYLTERGTTFGYNNLVVDFR-S 169 (267)
T ss_dssp SEEEECGGGTTCHH----HHHHHHTTTSEEEEECCTTCCGGGGHHHHHHHHHTTCS-SEEEEECCEECSSSCEECCTT-H
T ss_pred CEEEECcccccCHH----HHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC-eEEEEECCCCCCCCccccCHH-H
Confidence 4899998 5543 77778899999999999999999999999988433323 799999843 332001121 3
Q ss_pred HHHHHHCCCceEEEcCCCCCC
Q 013450 401 IRAVRRSGQIVTWVSDPMHGN 421 (443)
Q Consensus 401 I~AV~~aG~~ViW~cDPMHGN 421 (443)
|..+++.| +| ++||=|+|
T Consensus 170 i~~lk~~~-pV--ivD~sH~~ 187 (267)
T 2nwr_A 170 LPIMKQWA-KV--IYDATHSV 187 (267)
T ss_dssp HHHHTTTS-EE--EEETTGGG
T ss_pred HHHHHHcC-CE--EEcCCccc
Confidence 44566677 55 57999999
No 7
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=85.15 E-value=0.6 Score=45.88 Aligned_cols=89 Identities=25% Similarity=0.366 Sum_probs=62.0
Q ss_pred CCceeecccc-CCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChHHH
Q 013450 326 AHFLWVGERT-RQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR---MGAENMRVKLPHLI 401 (443)
Q Consensus 326 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R---mGa~~v~~~LP~LI 401 (443)
.-++|||-|. |+.+ ++..+.+..-||++|=|.+++++|+...++.+-=...+ +|+|+-| ||..+..--|-. |
T Consensus 111 vd~lqIgA~~~~n~~--LLr~va~~gkPVilK~G~~~t~~ei~~ave~i~~~Gn~-~i~L~erg~~y~~~~~~vdl~~-i 186 (285)
T 3sz8_A 111 ADVLQVPAFLARQTD--LVVAIAKAGKPVNVKKPQFMSPTQLKHVVSKCGEVGND-RVMLCERGSSFGYDNLVVDMLG-F 186 (285)
T ss_dssp CSEEEECGGGTTCHH--HHHHHHHTSSCEEEECCTTSCGGGTHHHHHHHHHTTCC-CEEEEECCEECSSSCEECCTTH-H
T ss_pred CCEEEECccccCCHH--HHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC-cEEEEeCCCCCCCCcCccCHHH-H
Confidence 4489999965 4333 88889999999999999999999999999987322111 6888866 455441112333 3
Q ss_pred HHHHHC--CCceEEEcCCCCC
Q 013450 402 RAVRRS--GQIVTWVSDPMHG 420 (443)
Q Consensus 402 ~AV~~a--G~~ViW~cDPMHG 420 (443)
..+|+. |.||+. ||=|.
T Consensus 187 ~~lk~~~~~~pV~~--D~sHs 205 (285)
T 3sz8_A 187 RQMAETTGGCPVIF--DVTHS 205 (285)
T ss_dssp HHHHHHTTSCCEEE--ETTTT
T ss_pred HHHHHhCCCCCEEE--eCCCc
Confidence 334554 788875 88896
No 8
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=83.15 E-value=2.7 Score=40.20 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=65.7
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHH----Hh--hChH
Q 013450 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENM----RV--KLPH 399 (443)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v----~~--~LP~ 399 (443)
.-+++||-|+=+ +-..++.+....-||++|=|-+.+++|++.-++.+.-...+ .+.|+-| |-... .+ .|-
T Consensus 107 vd~~kIga~~~~-n~~ll~~~a~~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~-~i~L~~R-G~~~~~~y~~~~v~L~- 182 (262)
T 1zco_A 107 SDILQIGARNSQ-NFELLKEVGKVENPVLLKRGMGNTIQELLYSAEYIMAQGNE-NVILCER-GIRTFETATRFTLDIS- 182 (262)
T ss_dssp CSEEEECGGGTT-CHHHHHHHTTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCC-CEEEEEC-CBCCSCCSSSSBCCTT-
T ss_pred CCEEEECccccc-CHHHHHHHHhcCCcEEEecCCCCCHHHHHHHHHHHHHCCCC-eEEEEEC-CCCCCCCcChhhcCHH-
Confidence 348999999875 45667778888999999999999999999999999543333 7999998 52111 01 122
Q ss_pred HHHHHHHC-CCceEEEcCCCCCCcc
Q 013450 400 LIRAVRRS-GQIVTWVSDPMHGNTI 423 (443)
Q Consensus 400 LI~AV~~a-G~~ViW~cDPMHGNT~ 423 (443)
-|..+++. |.||+ .||=|+|..
T Consensus 183 ai~~lk~~~~~pVi--~d~sH~~g~ 205 (262)
T 1zco_A 183 AVPVVKELSHLPII--VDPSHPAGR 205 (262)
T ss_dssp HHHHHHHHBSSCEE--ECSSTTTCS
T ss_pred HHHHHHhhhCCCEE--EEcCCCCCc
Confidence 23345554 88843 888899765
No 9
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=76.62 E-value=0.96 Score=44.77 Aligned_cols=89 Identities=15% Similarity=0.246 Sum_probs=62.5
Q ss_pred CCceeecccc-CCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChHHH
Q 013450 326 AHFLWVGERT-RQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR---MGAENMRVKLPHLI 401 (443)
Q Consensus 326 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R---mGa~~v~~~LP~LI 401 (443)
.-++|||-|- |+.+ .+..+.+..-||++|=|-+++++|+...++.+-=...+ +|+|+-| ||.++..--|-. |
T Consensus 132 vd~lkIgA~~~~n~~--LLr~va~~gkPVilK~Gms~t~~ei~~ave~i~~~Gn~-~iiL~erg~~y~~~~~~vdl~~-i 207 (298)
T 3fs2_A 132 VDVLQIPAFLCRQTD--LLIAAARTGRVVNVKKGQFLAPWDMKNVLAKITESGNP-NVLATERGVSFGYNTLVSDMRA-L 207 (298)
T ss_dssp CSEEEECGGGTTCHH--HHHHHHHTTSEEEEECCTTCCGGGHHHHHHHHHTTTCC-CEEEEECCEECSSSCEECCTTH-H
T ss_pred CCEEEECccccCCHH--HHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC-eEEEEECCCCCCCCCCccCHHH-H
Confidence 4589999964 3333 77889999999999999999999999999988432222 6888866 465541111333 3
Q ss_pred HHHHHCCCceEEEcCCCCC
Q 013450 402 RAVRRSGQIVTWVSDPMHG 420 (443)
Q Consensus 402 ~AV~~aG~~ViW~cDPMHG 420 (443)
..+|+.|.||+. ||=|.
T Consensus 208 ~~lk~~~~PV~~--D~sHs 224 (298)
T 3fs2_A 208 PIMAGLGAPVIF--DATHS 224 (298)
T ss_dssp HHHHTTTSCEEE--EHHHH
T ss_pred HHHHHcCCcEEE--cCCCc
Confidence 334557888876 88784
No 10
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=76.57 E-value=1.7 Score=42.47 Aligned_cols=90 Identities=19% Similarity=0.329 Sum_probs=61.3
Q ss_pred Cceeecccc-CCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc---ChhHHHhhChHHHH
Q 013450 327 HFLWVGERT-RQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM---GAENMRVKLPHLIR 402 (443)
Q Consensus 327 H~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm---Ga~~v~~~LP~LI~ 402 (443)
-+++||-|- |+.+ .++.+.+..-||++|=|-.++++|+..-++++.-...+ .+.|+-|= +...-..-|-.+ .
T Consensus 110 d~~kIgA~~~~n~~--Ll~~~a~~~kPV~lk~G~~~t~~ei~~Av~~i~~~Gn~-~i~L~~rg~~~~y~~~~~dl~~i-~ 185 (292)
T 1o60_A 110 DIIQLPAFLARQTD--LVEAMAKTGAVINVKKPQFLSPSQMGNIVEKIEECGND-KIILCDRGTNFGYDNLIVDMLGF-S 185 (292)
T ss_dssp SEEEECGGGTTCHH--HHHHHHHTTCEEEEECCTTSCGGGHHHHHHHHHHTTCC-CEEEEECCEECSTTCEECCTTHH-H
T ss_pred CEEEECcccccCHH--HHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC-eEEEEECCCCCCCCccccCHHHH-H
Confidence 488999832 2222 77778899999999999999999999999988433322 79999984 443211123333 2
Q ss_pred HHHHC--CCceEEEcCCCCCCc
Q 013450 403 AVRRS--GQIVTWVSDPMHGNT 422 (443)
Q Consensus 403 AV~~a--G~~ViW~cDPMHGNT 422 (443)
.+++. |.+|++ ||=|+|-
T Consensus 186 ~lk~~~~~~pV~~--D~sH~~q 205 (292)
T 1o60_A 186 VMKKASKGSPVIF--DVTHSLQ 205 (292)
T ss_dssp HHHHHTTSCCEEE--EHHHHCC
T ss_pred HHHhhCCCCCEEE--ECCCccc
Confidence 45555 678764 5559883
No 11
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=75.72 E-value=3.1 Score=40.32 Aligned_cols=93 Identities=18% Similarity=0.187 Sum_probs=67.9
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChh--H-HHhhCh-HHH
Q 013450 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAE--N-MRVKLP-HLI 401 (443)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~--~-v~~~LP-~LI 401 (443)
.-+++||-|+=+ +-.|++.+.+..-||++|=|-+++++|+..-++.+--...+ .++|+-|.+.. . =.+.+- .-|
T Consensus 122 vd~~kIgs~~~~-n~~ll~~~a~~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~-~i~L~~Rg~~~yp~y~~~~vdl~~i 199 (276)
T 1vs1_A 122 ADMLQIGARNMQ-NFPLLREVGRSGKPVLLKRGFGNTVEELLAAAEYILLEGNW-QVVLVERGIRTFEPSTRFTLDVAAV 199 (276)
T ss_dssp CSEEEECGGGTT-CHHHHHHHHHHTCCEEEECCTTCCHHHHHHHHHHHHHTTCC-CEEEEECCBCCSCCSSSSBCBHHHH
T ss_pred CCeEEECccccc-CHHHHHHHHccCCeEEEcCCCCCCHHHHHHHHHHHHHcCCC-eEEEEeCCcCCCCCcCcchhCHHHH
Confidence 348999999876 77899999999999999999999999999999987322222 79999998721 1 111111 124
Q ss_pred HHHHH-CCCceEEEcCCCCCCc
Q 013450 402 RAVRR-SGQIVTWVSDPMHGNT 422 (443)
Q Consensus 402 ~AV~~-aG~~ViW~cDPMHGNT 422 (443)
..+++ .|.+|+ .||=|+|.
T Consensus 200 ~~lk~~~~lpVi--~dssH~~g 219 (276)
T 1vs1_A 200 AVLKEATHLPVI--VDPSHPAG 219 (276)
T ss_dssp HHHHHHBSSCEE--ECCHHHHC
T ss_pred HHHHHHhCCCEE--EeCCCCCC
Confidence 55565 488853 78889876
No 12
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=66.34 E-value=4.2 Score=38.20 Aligned_cols=66 Identities=12% Similarity=0.221 Sum_probs=49.9
Q ss_pred eCCCCCHHHHHHHHHHhCCCC--CCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCc
Q 013450 357 VSDKMDPNELVKLIEILNPQN--KPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNT 422 (443)
Q Consensus 357 vGP~~~p~elv~L~~~LnP~~--~pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT 422 (443)
.||.++++++.++++.+.=.+ ......++.=+|.....+.+=.+|+..++.|..+.++|||.-|.+
T Consensus 53 ~g~~~~~~~~~~~~~~~~~~~~l~~~d~v~~G~l~~~~~~~~v~~~l~~~~~~~~~~~vv~DPVm~~~ 120 (289)
T 3pzs_A 53 TGCVMPASHLTDIVQGIADIDRLKDCDAVLSGYIGSPEQGSHILAAVAQVKQANPDAWYFCDPVMGHP 120 (289)
T ss_dssp CEEECCHHHHHHHHHHHHHTTCGGGCCEEEECCCSSHHHHHHHHHHHHHHHHHCTTCEEEECCCCEET
T ss_pred ccccCCHHHHHHHHHHHHhcCCccCCCEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCccccC
Confidence 367788999999998874221 244566777777777778888888888888888899999976654
No 13
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}
Probab=66.07 E-value=3.4 Score=39.51 Aligned_cols=65 Identities=18% Similarity=0.319 Sum_probs=48.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCC--CCcEEEEeccChhHHHhhChHHHHHHHHCCCc----eEEEcCCCCCCc
Q 013450 358 SDKMDPNELVKLIEILNPQNK--PGRITIITRMGAENMRVKLPHLIRAVRRSGQI----VTWVSDPMHGNT 422 (443)
Q Consensus 358 GP~~~p~elv~L~~~LnP~~~--pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~~----ViW~cDPMHGNT 422 (443)
|+.++.+++..+++-+.+... .-...+|.=+|...+.+.+=.+|+.+++.+-. +.|+|||.-|-+
T Consensus 53 g~~~~~~ql~~~~~~~~~~~~~~~~daV~tG~l~s~~~i~~v~~~l~~~k~~~~~~~~~~~vv~DPVm~d~ 123 (300)
T 3zs7_A 53 GHRMSLQEYDELMEGVRANNFLSNYRYILTGYINNVDIIGRIRDTLKEVRELREKEDKKLTFICDPVMGDD 123 (300)
T ss_dssp EEECCHHHHHHHHHHHHHTTCGGGCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECCCC---
T ss_pred CCcCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHhhCcCcCCCceEEEccccccC
Confidence 567788999999999887764 33567888888777777777888888765543 889999976654
No 14
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=62.21 E-value=5.4 Score=38.60 Aligned_cols=90 Identities=16% Similarity=0.223 Sum_probs=61.2
Q ss_pred Cceeecccc-CCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHH---hhChHHHH
Q 013450 327 HFLWVGERT-RQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMR---VKLPHLIR 402 (443)
Q Consensus 327 H~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~---~~LP~LI~ 402 (443)
-+++||-+- |+.+ .++.+++..-||++|=|-.++++|+..-++++--...+ .+.|+-|-+.-.-. -.|- -|.
T Consensus 107 d~~kIga~~~~n~~--ll~~~a~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~-~i~L~~rg~~~~~~~~~~dl~-~i~ 182 (280)
T 2qkf_A 107 DVIQLPAFLARQTD--LVVAMAKTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNG-KLILCERGSSFGYDNLVVDML-GFG 182 (280)
T ss_dssp SEEEECGGGTTBHH--HHHHHHHTCCEEEEECCTTSCGGGHHHHHHHHHHTTCC-CEEEEECCEECSTTCEECCTT-HHH
T ss_pred CEEEECcccccCHH--HHHHHHcCCCcEEEECCCCCCHHHHHHHHHHHHHcCCC-eEEEEECCCCCCCCccccCHH-HHH
Confidence 488999832 2222 77778899999999999999999999999988433222 79999886532111 1222 344
Q ss_pred HHHHC--CCceEEEcCCCCCCc
Q 013450 403 AVRRS--GQIVTWVSDPMHGNT 422 (443)
Q Consensus 403 AV~~a--G~~ViW~cDPMHGNT 422 (443)
.+++. |.+|+. ||=|+|-
T Consensus 183 ~lk~~~~~~pV~~--D~sH~~q 202 (280)
T 2qkf_A 183 VMKQTCGNLPVIF--DVTHSLQ 202 (280)
T ss_dssp HHHHHTTTCCEEE--EHHHHCC
T ss_pred HHHHhCCCCCEEE--ECCCCcc
Confidence 56666 677764 5559983
No 15
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=56.30 E-value=13 Score=37.39 Aligned_cols=92 Identities=16% Similarity=0.192 Sum_probs=63.6
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC-----hhHHHhhChHH
Q 013450 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMG-----AENMRVKLPHL 400 (443)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmG-----a~~v~~~LP~L 400 (443)
.-+++||-|+=+ +-..+..+.+..-||++|=|-+++++|+..-++.+--...+ .+.|+-|.+ ...-.-.|- .
T Consensus 190 vd~lkIgAr~~~-n~~LL~~va~~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~-~viLceRG~~typ~~~~~~vdl~-a 266 (350)
T 1vr6_A 190 ADIIQIGARNAQ-NFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNT-KIILCERGIRTFEKATRNTLDIS-A 266 (350)
T ss_dssp CSEEEECGGGTT-CHHHHHHHHTTCSCEEEECCTTCCHHHHHHHHHHHHHTTCC-CEEEEECCBCCSCCSSSSBCCTT-H
T ss_pred CCEEEECccccc-CHHHHHHHHccCCcEEEcCCCCCCHHHHHHHHHHHHHCCCC-eEEEEeCCCCCCCCcChhhhhHH-H
Confidence 358999999876 56677888889999999999999999999999977322222 789984544 211111222 2
Q ss_pred HHHHHHC-CCceEEEcCCCCCCc
Q 013450 401 IRAVRRS-GQIVTWVSDPMHGNT 422 (443)
Q Consensus 401 I~AV~~a-G~~ViW~cDPMHGNT 422 (443)
|..+++. |.||+ .||=|+|.
T Consensus 267 i~~lk~~~~lpVi--~dssHs~G 287 (350)
T 1vr6_A 267 VPIIRKESHLPIL--VDPSHSGG 287 (350)
T ss_dssp HHHHHHHBSSCEE--ECHHHHHC
T ss_pred HHHHHHhhCCCEE--EeCCCCCc
Confidence 3345544 88853 78889865
No 16
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=52.82 E-value=4.6 Score=39.66 Aligned_cols=90 Identities=20% Similarity=0.310 Sum_probs=60.8
Q ss_pred CCceeecccc-CCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCC-----CCcEEEEec---cChhHHHhh
Q 013450 326 AHFLWVGERT-RQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNK-----PGRITIITR---MGAENMRVK 396 (443)
Q Consensus 326 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~-----pGRlTLI~R---mGa~~v~~~ 396 (443)
.-++|||-|- |+.+ ++..+.+..-||++|=|-+++++|+..-++.+-=... ..+|+|.-| ||.+++---
T Consensus 108 vd~lkIgA~~~~n~~--LLr~~a~~gkPVilK~G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~erg~~y~~~~~~vd 185 (288)
T 3tml_A 108 VDVLQTPAFLCRQTD--FIHACARSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGVSFGYNNLVSD 185 (288)
T ss_dssp CSEEEECGGGTTCHH--HHHHHHTSSSCEEEECCTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEEECCEECSSSCEECC
T ss_pred CCEEEECcccccCHH--HHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCccCCCCcEEEEeCCCCCCCCcCcCC
Confidence 4488999954 3333 6777999999999999999999999999998831111 126888765 555542111
Q ss_pred ChHHHHHHHHCCCceEEEcCCCCC
Q 013450 397 LPHLIRAVRRSGQIVTWVSDPMHG 420 (443)
Q Consensus 397 LP~LI~AV~~aG~~ViW~cDPMHG 420 (443)
|-. |..+++.|.|| ++||=|.
T Consensus 186 l~~-i~~lk~~~~pV--~~D~sHs 206 (288)
T 3tml_A 186 MRS-LAIMRETNAPV--VFDATHS 206 (288)
T ss_dssp HHH-HHHGGGGSSCE--EEEHHHH
T ss_pred HHH-HHHHHhcCCcE--EEcCCcc
Confidence 222 22235578888 5688884
No 17
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=50.65 E-value=35 Score=31.22 Aligned_cols=68 Identities=16% Similarity=0.262 Sum_probs=54.2
Q ss_pred HHHHHHHHHhCCC-CCCCcEEEEeccCh----hHHHhhChHHHHHHHHCCCceEEEcCC-CCCCcccCCCCccc
Q 013450 364 NELVKLIEILNPQ-NKPGRITIITRMGA----ENMRVKLPHLIRAVRRSGQIVTWVSDP-MHGNTIKAPCGLKT 431 (443)
Q Consensus 364 ~elv~L~~~LnP~-~~pGRlTLI~RmGa----~~v~~~LP~LI~AV~~aG~~ViW~cDP-MHGNT~~~~~G~KT 431 (443)
.-|+++|+.|=-. ..+-.|.|||..-. ++..+.|-.|=+.....|....|..|. +|---+.+.+|.+.
T Consensus 52 ~NfvrF~Ellvk~~~~~~~I~L~T~~d~~~~~~~Q~~~L~~ik~sL~~~gI~l~~~fs~tiHDR~I~~dnGW~I 125 (163)
T 4a5z_A 52 YNFLRFCEMLIKRPCKVKTIHLLTSLDEGIEQVQQSRGLQEIEESLRSHGVLLEVQYSSSIHDREIRFNNGWMI 125 (163)
T ss_dssp HHHHHHHHHHHC--CCCCEEEEEECCCCSTTHHHHHHHHHHHHHHHHHTTCEEEEEECTTCCCCEEEETTSEEE
T ss_pred HHHHHHHHHHHhcCCCccEEEEEeCCccccCHHHHHHHHHHHHHHHHHCCCEEEEEeCCCccceEEEecCCeEE
Confidence 4588888887322 24557999999843 455788999999999999999999986 99999999998764
No 18
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A*
Probab=49.52 E-value=16 Score=34.24 Aligned_cols=62 Identities=15% Similarity=0.268 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHhCCC-CCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCC
Q 013450 359 DKMDPNELVKLIEILNPQ-NKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHG 420 (443)
Q Consensus 359 P~~~p~elv~L~~~LnP~-~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHG 420 (443)
+.++++++.++++.+... -...++.++.=+......+.+-.+++..++.|.++.+++||--+
T Consensus 55 ~~l~~~~i~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~a~~~g~~~~vv~Dp~~~ 117 (312)
T 2yxt_A 55 QVLNSDELQELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLG 117 (312)
T ss_dssp EECCHHHHHHHHHHHHHTTCCCCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTCEEEECCCCE
T ss_pred ccCCHHHHHHHHHHHHhcCCccCCEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEECCCcC
Confidence 367889998887776432 23456755543333344455557788888889888889999744
No 19
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=47.18 E-value=34 Score=33.20 Aligned_cols=91 Identities=14% Similarity=0.296 Sum_probs=65.8
Q ss_pred CCcccCCCCceeeccccCCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHh--CCCCCCCcEEEEeccCh----hH
Q 013450 319 GLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEIL--NPQNKPGRITIITRMGA----EN 392 (443)
Q Consensus 319 g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~L--nP~~~pGRlTLI~RmGa----~~ 392 (443)
|.|.+-++--+||= .++|...--|. -|+++|+.| +|.++. +|.|||..-. ++
T Consensus 116 g~yl~~~~~~i~i~-------DPYir~~hQ~~--------------Nl~~f~E~~vk~~~~~~-~i~L~T~~d~~~~~~~ 173 (257)
T 2ymb_A 116 REYLNETVTEVWIE-------DPYIRHTHQLY--------------NFLRFCEMLIKRPCKVK-TIHLLTSLDEGIEQVQ 173 (257)
T ss_dssp STTCSTTCCEEEEE-------CSCCCSHHHHH--------------HHHHHHHHHTC--CCCC-EEEEEECCCSSTTHHH
T ss_pred HHHHhcCCeEEEEe-------CceecchHHHH--------------HHHHHHHHHhhccCccc-eEEEEecCCCcccHHH
Confidence 34444567788883 34444444444 488888887 566655 8999998753 24
Q ss_pred HHhhChHHHHHHHHCCCceEEEcCC-CCCCcccCCCCccc
Q 013450 393 MRVKLPHLIRAVRRSGQIVTWVSDP-MHGNTIKAPCGLKT 431 (443)
Q Consensus 393 v~~~LP~LI~AV~~aG~~ViW~cDP-MHGNT~~~~~G~KT 431 (443)
-.+.|-.|-+.....|....|..|. +|---+.+.+|.+.
T Consensus 174 q~~~l~~ik~sl~~~gi~~~~~~~~tiHDR~I~~dnGW~I 213 (257)
T 2ymb_A 174 QSRGLQEIEESLRSHGVLLEVQYSSSIHDREIRFNNGWMI 213 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECTTCCCCEEEETTSEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCCccceeEEecCCcEE
Confidence 5567889999999999999999977 89999999999764
No 20
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=45.69 E-value=1.1e+02 Score=25.64 Aligned_cols=96 Identities=16% Similarity=0.261 Sum_probs=60.9
Q ss_pred CCeeEEecCCccchhhhcChhhHHHHHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCC
Q 013450 125 GKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVN 204 (443)
Q Consensus 125 G~AFlLQGGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN 204 (443)
|...++== .-.++|.|++++.+.+-++++.+++..|....+..-+.+ ++|||=- | -+-=.-+|-|.||-.|
T Consensus 40 gH~LViPk-~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~-~~~gq~v-~------HlH~HiiPr~~~d~~~ 110 (138)
T 3p0t_A 40 GHTLVVPR-EEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSGL-IIAGLEV-P------HLHVHVFPTRSLSDFG 110 (138)
T ss_dssp TCEEEEES-SCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEE-EECCSSC-S------SCCEEEEEESCGGGSS
T ss_pred cEEEEEEh-HHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcE-EECCccc-C------EEEEEEeccccCCCCc
Confidence 44444443 236788999999999989999998888865445444444 3677621 1 1122448889987554
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 013450 205 GDAFDEKSRNPDPQRLIRAYCQSAATLN 232 (443)
Q Consensus 205 g~~f~~~aR~PDP~Rml~AY~~SaaTLn 232 (443)
|.......+|+-|-..|..=+..|+
T Consensus 111 ---~~~~~~~~~~~~l~~~~~~l~~~l~ 135 (138)
T 3p0t_A 111 ---FANVDRNPSPESLDEAQAKIKAALA 135 (138)
T ss_dssp ---STTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred ---ccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3333677788877776665544443
No 21
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=42.60 E-value=15 Score=36.05 Aligned_cols=99 Identities=18% Similarity=0.215 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccccccccCCCCCcccCCCCceeeccccCCCCchhHHHh
Q 013450 267 ELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFL 346 (443)
Q Consensus 267 ~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVefl 346 (443)
++.+..-+|-+....+|. ..+++-.+|--|+=.+=++.|-. .+.. |..| +-.|.|. -+|-+
T Consensus 149 ~ii~~f~~aA~~a~~aGf-------DgVEih~a~GyLl~qFlsp~~N~--R~D~-yGGs-----lenR~r~----~~eiv 209 (349)
T 3hgj_A 149 RILQAFVEGARRALRAGF-------QVIELHMAHGYLLSSFLSPLSNQ--RTDA-YGGS-----LENRMRF----PLQVA 209 (349)
T ss_dssp HHHHHHHHHHHHHHHTTC-------CEEEEEECTTSHHHHHHCTTTCC--CCST-TSSS-----HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-------CEEEECCccchHHHHhcCCcccc--cCCC-CCcC-----HHHHHHH----HHHHH
Confidence 344444445454555665 45688888977775555565422 1222 5554 4567663 35555
Q ss_pred hhcc------CCcceeeCC------CCCHHHHHHHHHHhCCCCCCCcEEEE
Q 013450 347 KGVA------NPLGIKVSD------KMDPNELVKLIEILNPQNKPGRITII 385 (443)
Q Consensus 347 rgI~------NPIGvKvGP------~~~p~elv~L~~~LnP~~~pGRlTLI 385 (443)
+.|+ -|||||++| ..+.+|.+++++.|.....- =|.+.
T Consensus 210 ~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd-~i~vs 259 (349)
T 3hgj_A 210 QAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVD-LLDCS 259 (349)
T ss_dssp HHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCC-EEEEE
T ss_pred HHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCC-EEEEe
Confidence 5553 489999999 57899999999999755422 34444
No 22
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=39.69 E-value=22 Score=35.24 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.1
Q ss_pred CCcceeeCCCCCHHHHHHHHHHhCCCC
Q 013450 351 NPLGIKVSDKMDPNELVKLIEILNPQN 377 (443)
Q Consensus 351 NPIGvKvGP~~~p~elv~L~~~LnP~~ 377 (443)
-||.||+.|..+.+|+.++++.+.-+.
T Consensus 194 ~PV~vKi~p~~~~~~~a~~~~~aga~~ 220 (345)
T 3oix_A 194 KPLGIKLPPYFDIVHFDQAAAIFNXYP 220 (345)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHHTTSC
T ss_pred CCeEEEECCCCCHHHHHHHHHHhCCCc
Confidence 499999999999999999999987554
No 23
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=38.16 E-value=62 Score=30.43 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=31.3
Q ss_pred HHHhhhcc----CCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec
Q 013450 343 VEFLKGVA----NPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR 387 (443)
Q Consensus 343 VeflrgI~----NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R 387 (443)
.++++.|+ =||.||+.|..+.+++.++++.+.-.... =|+++.|
T Consensus 147 ~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d-~i~v~~~ 194 (311)
T 1jub_A 147 EKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLT-YVNSVNS 194 (311)
T ss_dssp HHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCC-EEEECCC
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCc-EEEecCC
Confidence 45666554 39999999999999999999998644433 2444433
No 24
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=35.80 E-value=65 Score=28.28 Aligned_cols=55 Identities=13% Similarity=0.292 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCc
Q 013450 362 DPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNT 422 (443)
Q Consensus 362 ~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT 422 (443)
+++++++.+.. ..+|-|.|..=. ...-.+.||.+|+..++.|+.++-+.+=| |+.
T Consensus 135 ~~~~i~~~~~~----~~~g~IiL~Hd~-~~~t~~al~~ii~~l~~~Gy~~v~l~~~~-~~~ 189 (195)
T 2cc0_A 135 STDAIVQAVSR----LGNGQVILMHDW-PANTLAAIPRIAQTLAGKGLCSGMISPQT-GRA 189 (195)
T ss_dssp CHHHHHHHHHT----CCTTCEEEEESS-CHHHHHHHHHHHHHHHHTTEEECEECTTT-SSE
T ss_pred CHHHHHHHHhC----cCcCeEEEECCC-chhHHHHHHHHHHHHHHCCCEEEEeCccc-CCC
Confidence 57777776653 457888888743 34555889999999999999999776654 544
No 25
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=32.80 E-value=40 Score=33.00 Aligned_cols=55 Identities=31% Similarity=0.463 Sum_probs=24.2
Q ss_pred CCeeEEecCCcc-chhhhcChhhHHHHHHHHHHHHHHHhhcCCCceEEeccccccCCC-CCCCcccccCCeecccccCC
Q 013450 125 GKAFLLQGGDCA-ESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAK-PRSDPFEEKNGVKLPSYRGD 201 (443)
Q Consensus 125 G~AFlLQGGDCA-EsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAK-PRS~~~E~~~G~~LPsYRGD 201 (443)
++.|++=+|=|+ |+ .+.+.+..+-|...+.-+ +.++| +-+-|-| ||+++. ||||-
T Consensus 15 ~~~~~vIaGPCsie~-----~~~~~e~A~~lk~~~~~~----~~~~v----~k~~f~KapRTs~~---------sf~Gl 71 (288)
T 3tml_A 15 DQPFFLIAGTCVVES-----EQMTIDTAGRLKEICEKL----NVPFI----YKSSYDKANRSSGK---------SFRGL 71 (288)
T ss_dssp TSCCEEEEECSBCCC-----HHHHHHHHHHHHHHHHHH----TCCEE----EECBC-----------------------
T ss_pred CCceEEEEeCCcCCC-----HHHHHHHHHHHHHHHHHc----CCCEE----EecccccCCCCCCC---------CcCCc
Confidence 346888889897 43 444444444444444444 25555 3567888 999987 88886
No 26
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=31.63 E-value=62 Score=27.39 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=41.3
Q ss_pred eeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCC--ceEEEc
Q 013450 356 KVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQ--IVTWVS 415 (443)
Q Consensus 356 KvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~--~ViW~c 415 (443)
-+|+..+++++++.+...||+- +-|-+-++. .. ..++.+|+++++.|. ..+|+.
T Consensus 36 ~lG~~~p~e~~v~~a~~~~~d~----v~lS~~~~~-~~-~~~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 36 NIGVLSPQELFIKAAIETKADA----ILVSSLYGQ-GE-IDCKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp EEEEEECHHHHHHHHHHHTCSE----EEEEECSST-HH-HHHTTHHHHHHHTTCTTCEEEEE
T ss_pred ECCCCCCHHHHHHHHHhcCCCE----EEEEecCcC-cH-HHHHHHHHHHHhcCCCCCEEEEE
Confidence 3799999999999999999862 334444543 33 568999999999986 567775
No 27
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=31.25 E-value=37 Score=28.19 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHhCCCCCCCcEEEE--eccChhHHHhhChHHHHHHHHCCCceEEEcCCC
Q 013450 362 DPNELVKLIEILNPQNKPGRITII--TRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPM 418 (443)
Q Consensus 362 ~p~elv~L~~~LnP~~~pGRlTLI--~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPM 418 (443)
-|+|+.+.++.- ...++.+| .++|+..-.+.+..++++.++.+..++|+|++.
T Consensus 7 l~~~~~~~l~~~----~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~ 61 (170)
T 2o6l_A 7 LPKEMEDFVQSS----GENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGN 61 (170)
T ss_dssp CCHHHHHHHHTT----TTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSS
T ss_pred CCHHHHHHHHcC----CCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCc
Confidence 357777776531 12233344 345433345678899999998899999999854
No 28
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=30.85 E-value=2.5e+02 Score=23.86 Aligned_cols=84 Identities=8% Similarity=-0.001 Sum_probs=57.5
Q ss_pred ccchhhhcChhhHHHHHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCCC-CCCC-CCC
Q 013450 135 CAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNG-DAFD-EKS 212 (443)
Q Consensus 135 CAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg-~~f~-~~a 212 (443)
-.+++.|++++...+-+..+..++..|....+..-+.|| .|||-= --+-=.-+|-|.||.... +-+. ...
T Consensus 43 h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-~aGq~V-------~HlH~HviPR~~~D~~~p~~vw~~~~~ 114 (137)
T 3ohe_A 43 GIREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVA-ALGNMV-------PQLHLHHIVRYQGDPAWPGPVWGKQPP 114 (137)
T ss_dssp TCCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE-ECCSSC-------CSCCEEEEEECTTSTTTTSCCTTSSCC
T ss_pred ccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe-eccCcC-------CEEEEEEeCCCCCCCCCCcccccCCCC
Confidence 357888999999888889999999988877777779999 888841 112235689999997642 2222 234
Q ss_pred CCCChhHHHHHHHH
Q 013450 213 RNPDPQRLIRAYCQ 226 (443)
Q Consensus 213 R~PDP~Rml~AY~~ 226 (443)
+..|++-|-.-+..
T Consensus 115 ~~~~~eel~~~~~~ 128 (137)
T 3ohe_A 115 VPYTEEQQASVKAK 128 (137)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 55667655444433
No 29
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=30.51 E-value=21 Score=29.81 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhccCCCccCHHHH
Q 013450 90 KEELESVLKTLDDFPPIVFAGEA 112 (443)
Q Consensus 90 ~~~L~~v~~~L~~~PPLV~a~Ei 112 (443)
-.+|.+|.+.|+.|||++...|.
T Consensus 61 LsQLKRvQRdlrGLPP~~~e~~~ 83 (87)
T 2rf4_B 61 ISQLKRIQRDFKGLPPAQDFSAA 83 (87)
T ss_dssp HHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHhhcCCCcchhcccC
Confidence 46799999999999999987663
No 30
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=30.28 E-value=20 Score=35.82 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.7
Q ss_pred CCcceeeCCCCCHHHHHHHHHHhCC
Q 013450 351 NPLGIKVSDKMDPNELVKLIEILNP 375 (443)
Q Consensus 351 NPIGvKvGP~~~p~elv~L~~~LnP 375 (443)
-||.||+.|..+.+++.++++.++-
T Consensus 194 ~PV~vKi~p~~d~~~~~~~a~~~~~ 218 (354)
T 4ef8_A 194 HSFGVKMPPYFDFAHFDAAAEILNE 218 (354)
T ss_dssp SCEEEEECCCCSHHHHHHHHHHHHT
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHh
Confidence 4999999999999999999998863
No 31
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=30.06 E-value=51 Score=32.50 Aligned_cols=96 Identities=24% Similarity=0.390 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCchhHH
Q 013450 267 ELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDGAHVE 344 (443)
Q Consensus 267 ~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVe 344 (443)
++.+..-+|-+....+|. ..+++-..|--|+=.+=.+.| |.| . |..| +-.|.|. -+|
T Consensus 140 ~ii~~f~~AA~~a~~aGf-------DgVEih~ahGYLl~qFlsp~~N~R~D----~-yGGs-----lenR~rf----~~e 198 (343)
T 3kru_A 140 SIVKAFGEAAKRANLAGY-------DVVEIHAAHGYLIHEFLSPLSNKRKD----E-YGNS-----IENRARF----LIE 198 (343)
T ss_dssp HHHHHHHHHHHHHHHHTC-------SEEEEEECTTSHHHHHHCTTTCCCCS----T-TSSS-----HHHHTHH----HHH
T ss_pred HHHHHHHHHHhhccccCC-------ceEEEecccchhHHHhhcccccccch----h-hccc-----hHhHHHH----HHH
Confidence 344444444444555665 456888888777655656654 333 2 4443 4567763 355
Q ss_pred Hhhhcc-----C-CcceeeCCC------CCHHHHHHHHHHhCCCCCCCcEEEE
Q 013450 345 FLKGVA-----N-PLGIKVSDK------MDPNELVKLIEILNPQNKPGRITII 385 (443)
Q Consensus 345 flrgI~-----N-PIGvKvGP~------~~p~elv~L~~~LnP~~~pGRlTLI 385 (443)
-++.|+ + ||+||++|. .+.+|.+++++.|... .-=|++.
T Consensus 199 iv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~--vd~i~vs 249 (343)
T 3kru_A 199 VIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDK--VDLIDVS 249 (343)
T ss_dssp HHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTT--CSEEEEE
T ss_pred HHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhcc--ccEEecc
Confidence 555554 4 999999994 5789999999999876 5566665
No 32
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=29.96 E-value=27 Score=33.04 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=25.7
Q ss_pred HHHhhhcc----CCcceeeCCCCCHHHHHHHHHHhC
Q 013450 343 VEFLKGVA----NPLGIKVSDKMDPNELVKLIEILN 374 (443)
Q Consensus 343 VeflrgI~----NPIGvKvGP~~~p~elv~L~~~Ln 374 (443)
.|+++.|+ -||.||++|..+.+++.++++.+.
T Consensus 149 ~~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~~ 184 (314)
T 2e6f_A 149 RTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLN 184 (314)
T ss_dssp HHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHH
Confidence 45555553 499999999999999999888875
No 33
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=29.95 E-value=31 Score=33.80 Aligned_cols=100 Identities=18% Similarity=0.255 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccccccccCCCCCcccCCCCceeeccccCCCCchhHHHh
Q 013450 267 ELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFL 346 (443)
Q Consensus 267 ~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVefl 346 (443)
++.+..-+|-+....+|. ..+++-.+|--|+=.+=.+.|.+ .+.. |..| +..|.|. -+|-+
T Consensus 141 ~ii~~f~~aA~~a~~aGf-------DgVEih~a~GyLl~qFlsp~~N~--R~D~-yGGs-----lenR~r~----~~eiv 201 (340)
T 3gr7_A 141 ETVQAFQNGARRAKEAGF-------DVIEIHAAHGYLINEFLSPLSNR--RQDE-YGGS-----PENRYRF----LGEVI 201 (340)
T ss_dssp HHHHHHHHHHHHHHHHTC-------SEEEEEECTTCHHHHHHCTTTCC--CCST-TSSS-----HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-------CEEEEccccchHHHHcCCCccCc--CCCc-ccCC-----HHHHHHH----HHHHH
Confidence 344444444455555665 45688889977776665565522 2222 5444 4567663 35555
Q ss_pred hhcc----CCcceeeCCC------CCHHHHHHHHHHhCCCCCCCcEEEEe
Q 013450 347 KGVA----NPLGIKVSDK------MDPNELVKLIEILNPQNKPGRITIIT 386 (443)
Q Consensus 347 rgI~----NPIGvKvGP~------~~p~elv~L~~~LnP~~~pGRlTLI~ 386 (443)
+.|+ -||+||++|. .+.+|.+++++.|.-.... -|.+..
T Consensus 202 ~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd-~i~vs~ 250 (340)
T 3gr7_A 202 DAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVD-LVDVSS 250 (340)
T ss_dssp HHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCC-EEEEEC
T ss_pred HHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCC-EEEEec
Confidence 5554 5999999996 5788899999988755432 566654
No 34
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=29.18 E-value=72 Score=30.88 Aligned_cols=101 Identities=20% Similarity=0.255 Sum_probs=62.7
Q ss_pred HHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccccccccCCCCCcccCCCCceeeccccCCCCchhHHHhh
Q 013450 268 LAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLK 347 (443)
Q Consensus 268 ~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflr 347 (443)
+.+...+|-+....+|. ..+++-.+|--|+-.+=++.|-. .+.. |..| +-.|.|. -+|-++
T Consensus 142 ~i~~~~~aA~~a~~aGf-------DgVeih~~~gyLl~qFlsp~~n~--R~d~-yGGs-----lenr~r~----~~eiv~ 202 (338)
T 1z41_A 142 TVQEFKQAAARAKEAGF-------DVIEIHAAHGYLIHEFLSPLSNH--RTDE-YGGS-----PENRYRF----LREIID 202 (338)
T ss_dssp HHHHHHHHHHHHHHTTC-------SEEEEEECTTSHHHHHHCTTTCC--CCST-TSSS-----HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-------CEEEeccccchHHHHccCCCcCC--cCcc-cCcc-----hhhhHHH----HHHHHH
Confidence 33444444444455665 45678888877776666666521 1122 4433 2456553 356666
Q ss_pred hc----cCCcceeeCC------CCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 013450 348 GV----ANPLGIKVSD------KMDPNELVKLIEILNPQNKPGRITIITRM 388 (443)
Q Consensus 348 gI----~NPIGvKvGP------~~~p~elv~L~~~LnP~~~pGRlTLI~Rm 388 (443)
.| .-||+||++| ..+.+|.+++++.|..... --|.+..+.
T Consensus 203 avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gv-d~i~v~~~~ 252 (338)
T 1z41_A 203 EVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGV-DLIDCSSGA 252 (338)
T ss_dssp HHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTC-CEEEEECCC
T ss_pred HHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCC-CEEEEecCc
Confidence 66 5699999999 5889999999999975443 356666553
No 35
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=28.83 E-value=1.2e+02 Score=26.33 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=41.6
Q ss_pred eCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCC--ceEEEcC
Q 013450 357 VSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQ--IVTWVSD 416 (443)
Q Consensus 357 vGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~--~ViW~cD 416 (443)
.|...+++++++.+...+|+- |-|-+.++. .+ +.++.+|+++++.|. ..||+.=
T Consensus 52 lG~~~p~e~lv~aa~~~~~di----V~lS~~~~~-~~-~~~~~~i~~L~~~g~~~i~v~vGG 107 (161)
T 2yxb_A 52 TGLRQTPEQVAMAAVQEDVDV----IGVSILNGA-HL-HLMKRLMAKLRELGADDIPVVLGG 107 (161)
T ss_dssp CCSBCCHHHHHHHHHHTTCSE----EEEEESSSC-HH-HHHHHHHHHHHHTTCTTSCEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCCE----EEEEeechh-hH-HHHHHHHHHHHhcCCCCCEEEEeC
Confidence 588899999999999999872 334455553 33 678999999999984 6688863
No 36
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=27.95 E-value=70 Score=32.14 Aligned_cols=62 Identities=19% Similarity=0.150 Sum_probs=36.9
Q ss_pred ChhHHHHHHHHHH--------HHHHHHHHHhcCCcccccccccccccccccCchhhHHHHHHH--HHHHHhhhHHhhCCC
Q 013450 216 DPQRLIRAYCQSA--------ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAH--RVDEALGFMSAAGLT 285 (443)
Q Consensus 216 DP~Rml~AY~~Sa--------aTLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~--~i~~al~Fm~a~G~~ 285 (443)
||-|||+|+..++ .|++.|+.... .+ +.+...-...++..+.. ....+|+.|..+|+-
T Consensus 154 DPlRiLRa~Rfaa~lgf~i~~~T~~ai~~~~~-~l-----------~~is~eRi~~El~kiL~~~~~~~~l~~l~~~Gll 221 (404)
T 1miw_A 154 DALRMMRAVRFVSELGFALAPDTEQAIVQNAP-LL-----------AHISVERMTMEMEKLLGGPFAARALPLLAETGLN 221 (404)
T ss_dssp CTHHHHHHHHHHHHHCCEECHHHHHHHHHHGG-GG-----------GGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTT
T ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-hh-----------ccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcch
Confidence 9999999999886 57888876431 11 11212222223333322 235678899999886
Q ss_pred CCCC
Q 013450 286 VDHP 289 (443)
Q Consensus 286 ~~~~ 289 (443)
..-|
T Consensus 222 ~~lP 225 (404)
T 1miw_A 222 AYLP 225 (404)
T ss_dssp TSST
T ss_pred hhCc
Confidence 5433
No 37
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=27.43 E-value=72 Score=26.30 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=30.5
Q ss_pred hHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhhhhhhh
Q 013450 391 ENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRVNT 441 (443)
Q Consensus 391 ~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev 441 (443)
+.+.+.|-.+|+.+++.|.+|+|++=|+--|- ..-....|.+++.|+
T Consensus 86 ~~~~~~~~~~i~~~~~~~~~vvl~~~~~p~~~----~~~~~~~~~~~~~~~ 132 (185)
T 3hp4_A 86 KKMQTNLTALVKKSQAANAMTALMEIYIPPNY----GPRYSKMFTSSFTQI 132 (185)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCCCSTT----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEeCCCCCcc----cHHHHHHHHHHHHHH
Confidence 34577888999999999999999984222121 011234566666654
No 38
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=26.23 E-value=29 Score=34.18 Aligned_cols=101 Identities=17% Similarity=0.165 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhhHHhhCCCCCCCCCCccceeecccccccccccccccccCCCCCcccCCCCceeeccccCCCCchhHHH
Q 013450 266 RELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEF 345 (443)
Q Consensus 266 ~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef 345 (443)
+++.+..-+|-+....+|. ..+++-..|--|+-.|=.+.|-. .+.. |..| +-.|.|. -+|-
T Consensus 154 ~~ii~~f~~aA~~a~~aGf-------DgVEih~a~GyLl~qFlsp~~N~--R~D~-yGGs-----lenR~r~----~~ei 214 (363)
T 3l5l_A 154 ARVKQDFVDAARRARDAGF-------EWIELHFAHGYLGQSFFSEHSNK--RTDA-YGGS-----FDNRSRF----LLET 214 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------SEEEEEECTTSHHHHHHCTTTCC--CCST-TSSS-----HHHHHHH----HHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-------CEEEEccccchHHHHccCCCcCC--CCcc-cCcC-----HHHHHHH----HHHH
Confidence 3344444455555556665 45688888887776666666522 2222 5544 2456653 3455
Q ss_pred hhhcc------CCcceeeCCC-------CCHHHHHHHHHHhCCCCCCCcEEEEe
Q 013450 346 LKGVA------NPLGIKVSDK-------MDPNELVKLIEILNPQNKPGRITIIT 386 (443)
Q Consensus 346 lrgI~------NPIGvKvGP~-------~~p~elv~L~~~LnP~~~pGRlTLI~ 386 (443)
++.|+ -|||||++|. .+.+|.+++++.|.....- =|.+..
T Consensus 215 v~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd-~i~vs~ 267 (363)
T 3l5l_A 215 LAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLD-LLSVSV 267 (363)
T ss_dssp HHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred HHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCC-EEEEec
Confidence 55554 3899999985 6788999999999765432 455554
No 39
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=25.88 E-value=76 Score=31.52 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=36.1
Q ss_pred ChhHHHHHHHHHH--------HHHHHHHHHhcCC-cccccccccccccccccCchhhHHHHHHH--HHHHHhhhHHhhCC
Q 013450 216 DPQRLIRAYCQSA--------ATLNLLRAFATGG-YAAMQRVTQWNLDFTEHSEQGDRYRELAH--RVDEALGFMSAAGL 284 (443)
Q Consensus 216 DP~Rml~AY~~Sa--------aTLn~lRa~~~gG-~adl~~~~~W~~~fv~~s~~~~~y~~~~~--~i~~al~Fm~a~G~ 284 (443)
||-|||+|+..++ .|++.||.....+ +..+ ...-...++..+.. ....+|+.|..+|+
T Consensus 149 DPlRiLRa~Rfaa~~gf~i~~~T~~~i~~~~~~~~l~~~-----------s~eRi~~El~kiL~~~~~~~~l~~l~~~gl 217 (390)
T 1vfg_A 149 DPVRILRALRFAGRLNFKLSRSTEKLLKQAVNLGLLKEA-----------PRGRLINEIKLALREDRFLEILELYRKYRV 217 (390)
T ss_dssp CTTHHHHHHHHHHHHTCEECHHHHHHHHHHHHTTGGGTS-----------CHHHHHHHHHHHHHCSSHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhhcc-----------CHHHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 9999999999887 4788888754322 2221 11112223333322 23567888999887
Q ss_pred CC
Q 013450 285 TV 286 (443)
Q Consensus 285 ~~ 286 (443)
-.
T Consensus 218 L~ 219 (390)
T 1vfg_A 218 LE 219 (390)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 40
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=25.24 E-value=94 Score=31.39 Aligned_cols=11 Identities=36% Similarity=0.416 Sum_probs=6.0
Q ss_pred EEEcCCCCCCc
Q 013450 412 TWVSDPMHGNT 422 (443)
Q Consensus 412 iW~cDPMHGNT 422 (443)
--+.|||||-+
T Consensus 174 kivvD~~nG~~ 184 (443)
T 3i3w_A 174 KVVVDCAHGAA 184 (443)
T ss_dssp EEEEECTTSTT
T ss_pred eEEEECCCChH
Confidence 33456666654
No 41
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=24.85 E-value=53 Score=29.66 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=33.0
Q ss_pred HHhhhccCCcceeeCCCCCHHHHHHHHHHh----CCCCCC-CcEEEEeccChhHHH
Q 013450 344 EFLKGVANPLGIKVSDKMDPNELVKLIEIL----NPQNKP-GRITIITRMGAENMR 394 (443)
Q Consensus 344 eflrgI~NPIGvKvGP~~~p~elv~L~~~L----nP~~~p-GRlTLI~RmGa~~v~ 394 (443)
+.+...+---+||.|-..+.+|..+|++.| ||.+-| ||=|+|. +..+.++
T Consensus 136 ~~~~~~ACr~AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~-l~~~ele 190 (197)
T 3kdg_A 136 EAAIMMSCKGSIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIH-HSTYEME 190 (197)
T ss_dssp HHHHHHHHCC----CCCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEE-EEHHHHH
T ss_pred HHHHHHhhHhhccCCCCCCHHHHHHHHHHHHcCCCCCcCCCCCcEEEE-eCHHHHH
Confidence 356666666789999999999999999998 676544 7877653 4444443
No 42
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=24.06 E-value=3.1e+02 Score=26.71 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=40.8
Q ss_pred CCCcEEEEe-------c---cChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCc---cccchhhhhhhh
Q 013450 378 KPGRITIIT-------R---MGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGL---KTRPFDSIRVNT 441 (443)
Q Consensus 378 ~pGRlTLI~-------R---mGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~---KTR~f~~Il~Ev 441 (443)
.||.+.+|. + .-.+.+.+.|-.+|+.+++.|.+|+++. |+..+..-...|. ....+.+++.|+
T Consensus 229 ~p~d~VvI~~G~ND~~~~~~~~~~~~~~~l~~ii~~lr~~~a~vilvt-P~~~~~~~~~~~~~~~~~~~~~~~i~~l 304 (375)
T 2o14_A 229 KPGDYFMLQLGINDTNPKHKESEAEFKEVMRDMIRQVKAKGADVILST-PQGRATDFTSEGIHSSVNRWYRASILAL 304 (375)
T ss_dssp CTTCEEEEECCTGGGCGGGCCCHHHHHHHHHHHHHHHHTTTCEEEEEC-CCCCTTCBCTTSCBCCTTSTTHHHHHHH
T ss_pred CCCCEEEEEEEccCCCccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC-CCCcccccCcccchhHHHHHHHHHHHHH
Confidence 467777773 1 1346677889999999999999888876 8876541112332 234555666554
No 43
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway, alpha beta, NAD(P) rossmann-like domain, oxidoreductase; 2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Probab=23.42 E-value=36 Score=36.36 Aligned_cols=59 Identities=31% Similarity=0.451 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCeeEEecCCccchhhhcChhhHHH-HHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCC
Q 013450 114 SLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRD-TFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNG 192 (443)
Q Consensus 114 ~Lr~~La~vA~G~AFlLQGGDCAEsF~e~~~~~I~~-k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G 192 (443)
+|-+-|+-||+ |....++++.||+ |+|+|..|--+ . .--||+ |||.+ + .+|
T Consensus 295 HLlQlL~LvAM------------EpP~s~~a~~iRdEKvKVLralrpi-~---~~~vVr-----GQY~~--g-----~~g 346 (541)
T 4e9i_A 295 HLTQILSLLTM------------EKPRSLSAEDIRDEKVQVLRQVVPA-N---PAECVL-----GQYTA--S-----ADG 346 (541)
T ss_dssp HHHHHHHHHHC------------CCCSSSSHHHHHHHHHHHHTTBCCC-C---TTSEEE-----EEEEC--C-----SSS
T ss_pred HHHHHHHHHhc------------CCCCCCCHHHHHHHHHHHHHccCCC-C---ccceEE-----ccccC--C-----CCC
Confidence 78888999998 7788889999995 89999765332 1 112554 99976 2 267
Q ss_pred eecccccCC
Q 013450 193 VKLPSYRGD 201 (443)
Q Consensus 193 ~~LPsYRGD 201 (443)
.+|.||-+
T Consensus 347 -~v~gY~~e 354 (541)
T 4e9i_A 347 -STPGYLDD 354 (541)
T ss_dssp -SSCCGGGC
T ss_pred -CCCCccCC
Confidence 88999976
No 44
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Probab=23.21 E-value=85 Score=28.65 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHhCCC--CCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCC
Q 013450 359 DKMDPNELVKLIEILNPQ--NKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHG 420 (443)
Q Consensus 359 P~~~p~elv~L~~~LnP~--~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHG 420 (443)
+..+++++.++++.|.-+ -...++.+|.=++.....+.+-.+++..++.++.+.+++||--+
T Consensus 66 ~~~~~~~~~~~~~~l~~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~a~~~~~g~~vv~Dp~~~ 129 (283)
T 2ddm_A 66 GAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIG 129 (283)
T ss_dssp EECCHHHHHHHHHHHHHTTCCTTCCEEEECCCSCHHHHHHHHHHHHHHHTTCTTCEEEECCCCE
T ss_pred eeCCHHHHHHHHHHHHhcCCcccCCEEEECCcCCHHHHHHHHHHHHHHHhcCCCCeEEECCccc
Confidence 456678887777776432 12347777766666555565666666666633345567799643
No 45
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=22.75 E-value=45 Score=31.90 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=21.8
Q ss_pred cCCcceeeCCCCCHHHHHHHHHHhC
Q 013450 350 ANPLGIKVSDKMDPNELVKLIEILN 374 (443)
Q Consensus 350 ~NPIGvKvGP~~~p~elv~L~~~Ln 374 (443)
.=||.||+.|..+.+|++++++.|-
T Consensus 211 ~~Pv~vKi~~~~~~~~~~~~a~~l~ 235 (336)
T 1f76_A 211 YVPIAVKIAPDLSEEELIQVADSLV 235 (336)
T ss_dssp CCCEEEECCSCCCHHHHHHHHHHHH
T ss_pred cCceEEEecCCCCHHHHHHHHHHHH
Confidence 3599999999999999988888875
No 46
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=21.81 E-value=86 Score=27.74 Aligned_cols=46 Identities=7% Similarity=0.051 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhhHHhhCCCCCCCCCCccceeeccc-------cccccccccc
Q 013450 264 RYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHE-------CLLLPYEQSL 311 (443)
Q Consensus 264 ~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHE-------aLLL~YE~al 311 (443)
.-..++.+|-++|.||+..|+-. ..++..+|+.+.+ ..|.||..+-
T Consensus 107 ~~~~i~~qi~~~l~~lH~~~ivH--~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~ 159 (298)
T 1csn_A 107 TVAMAAKQMLARVQSIHEKSLVY--RDIKPDNFLIGRPNSKNANMIYVVDFGMVK 159 (298)
T ss_dssp HHHHHHHHHHHHHHHHHTTTEEC--CCCCGGGEEECCSSSTTTTCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCCEec--CCCCHHHEEeccCCCCCCCeEEEEECcccc
Confidence 34568889999999999987653 3455567777654 5577777663
No 47
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=21.45 E-value=60 Score=30.14 Aligned_cols=53 Identities=13% Similarity=0.227 Sum_probs=39.7
Q ss_pred hHHHhhhccCCcceeeCCCCCHHHHHHHHHHh----CCCCCC-CcEEEEeccChhHHHh
Q 013450 342 HVEFLKGVANPLGIKVSDKMDPNELVKLIEIL----NPQNKP-GRITIITRMGAENMRV 395 (443)
Q Consensus 342 HVeflrgI~NPIGvKvGP~~~p~elv~L~~~L----nP~~~p-GRlTLI~RmGa~~v~~ 395 (443)
--+.+...+-=-+||.|-..+.+|..+|++.| ||.+-| ||=|+| ++..+.+++
T Consensus 157 ~~~~~as~ACr~AIk~g~~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~i-~ls~~eLek 214 (220)
T 3ncv_A 157 ENRILATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWV-KLTLKELDT 214 (220)
T ss_dssp HHHHHHHHTTCSSSCSSCCCCHHHHHHHHHHHHTSTTTTBCTTSCBSEE-EEEHHHHHH
T ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhCCCCCcCCCCCcEEE-EeCHHHHHH
Confidence 34567777777799999999999999999999 666544 887765 355445544
No 48
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=20.92 E-value=48 Score=33.08 Aligned_cols=38 Identities=3% Similarity=0.146 Sum_probs=28.7
Q ss_pred cCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 013450 350 ANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM 388 (443)
Q Consensus 350 ~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm 388 (443)
.=||.||+.|..+.+++.++++.+.-...- =|+++.|.
T Consensus 220 ~~Pv~vKi~p~~~~~~~~~ia~~~~~aGad-gi~v~ntt 257 (367)
T 3zwt_A 220 RPAVLVKIAPDLTSQDKEDIASVVKELGID-GLIVTNTT 257 (367)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCC-EEEECCCB
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHcCCC-EEEEeCCC
Confidence 459999999999999999999888533333 36666554
No 49
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=20.55 E-value=4e+02 Score=22.74 Aligned_cols=92 Identities=13% Similarity=0.084 Sum_probs=56.2
Q ss_pred CCeeEEecCCccchhhhcChhhHHHHHHHHHHHHHHHhhcCCCceEEe----ccccccCCCCCCCcccccCCeecccccC
Q 013450 125 GKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKV----GRMAGQFAKPRSDPFEEKNGVKLPSYRG 200 (443)
Q Consensus 125 G~AFlLQGGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkV----GRiAGQfAKPRS~~~E~~~G~~LPsYRG 200 (443)
|...++==- -.++|.|++++.+.+-++++..++..|....+-.-++| |..|||-= --+-=.-+|-|+|
T Consensus 46 gH~LViPk~-H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~g~~aGq~v-------~HlHiHiiPR~~~ 117 (149)
T 3ksv_A 46 GHMLVIPKE-HASCLHELGMEDAADVGVLLAKASRAVAGPDGSMQYNVLQNNGSLAHQEV-------PHVHFHIIPKTDE 117 (149)
T ss_dssp TCEEEEESS-CCSSGGGSCHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSTTTTCCS-------SSCCEEEEEECCT
T ss_pred CEEEEEeCh-hhhhhhhCCHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecCcccCCCC-------CEEEEEEEecccC
Confidence 444444332 35789999999999999999999988876555444554 56777621 1112244788888
Q ss_pred CcCCCCCCCCCCCCCChhHHHHHHHH
Q 013450 201 DNVNGDAFDEKSRNPDPQRLIRAYCQ 226 (443)
Q Consensus 201 D~VNg~~f~~~aR~PDP~Rml~AY~~ 226 (443)
|- |..+.-.....+|+-|-+-+..
T Consensus 118 d~--g~~~~w~~~~~~~~~l~~~~~~ 141 (149)
T 3ksv_A 118 KT--GLKIGWDTVKVASDELAEDAKR 141 (149)
T ss_dssp TS--SCCCCCCCCCCCHHHHHHHHHH
T ss_pred CC--CcccCCCCCCCCHHHHHHHHHH
Confidence 72 3333333445666655444443
No 50
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=20.29 E-value=80 Score=29.73 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=36.2
Q ss_pred cEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccc
Q 013450 381 RITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRP 433 (443)
Q Consensus 381 RlTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~ 433 (443)
||-+++=.|.+.+...+ +|.++.++.||.|+++|.|-+...+. ..|+....
T Consensus 22 rIl~~~~~~~GHv~p~l-~La~~L~~~Gh~V~v~~~~~~~~~~~-~~G~~~~~ 72 (415)
T 3rsc_A 22 HLLIVNVASHGLILPTL-TVVTELVRRGHRVSYVTAGGFAEPVR-AAGATVVP 72 (415)
T ss_dssp EEEEECCSCHHHHGGGH-HHHHHHHHTTCEEEEEECGGGHHHHH-HTTCEEEE
T ss_pred EEEEEeCCCccccccHH-HHHHHHHHCCCEEEEEeCHHHHHHHH-hcCCEEEe
Confidence 78888877888886655 69999999999999999654332222 23554443
Done!