Query 013451
Match_columns 442
No_of_seqs 272 out of 669
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:59:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4698 Uncharacterized conser 100.0 8.4E-80 1.8E-84 630.5 20.0 386 11-433 82-473 (475)
2 PF04577 DUF563: Protein of un 100.0 8.4E-28 1.8E-32 225.1 20.4 198 120-368 1-204 (206)
3 COG4421 Capsular polysaccharid 99.7 5.4E-17 1.2E-21 160.3 17.1 233 111-431 123-361 (368)
4 PF02882 THF_DHG_CYH_C: Tetrah 86.3 3.1 6.8E-05 38.3 7.7 71 262-340 36-107 (160)
5 cd05212 NAD_bind_m-THF_DH_Cycl 86.2 3.7 7.9E-05 37.0 7.9 70 261-338 27-97 (140)
6 PRK14178 bifunctional 5,10-met 84.3 3 6.5E-05 41.9 7.0 73 261-341 151-224 (279)
7 PRK14188 bifunctional 5,10-met 74.9 14 0.00029 37.6 8.2 72 261-340 157-229 (296)
8 cd01971 Nitrogenase_VnfN_like 74.6 5.8 0.00013 42.0 5.8 100 261-363 154-261 (427)
9 PRK14194 bifunctional 5,10-met 71.4 18 0.00039 36.9 8.1 71 261-341 158-231 (301)
10 cd00316 Oxidoreductase_nitroge 71.0 15 0.00032 37.9 7.8 99 260-362 150-251 (399)
11 PRK14179 bifunctional 5,10-met 67.7 22 0.00048 35.9 7.8 72 261-340 157-229 (284)
12 cd01080 NAD_bind_m-THF_DH_Cycl 67.2 12 0.00027 34.6 5.5 73 260-341 42-116 (168)
13 PRK14189 bifunctional 5,10-met 65.7 21 0.00046 36.1 7.2 72 261-340 157-229 (285)
14 cd01967 Nitrogenase_MoFe_alpha 65.3 34 0.00074 35.6 9.1 97 261-362 159-258 (406)
15 PRK14175 bifunctional 5,10-met 65.2 20 0.00043 36.2 7.0 71 261-341 157-230 (286)
16 PRK14190 bifunctional 5,10-met 65.1 22 0.00048 35.9 7.3 71 261-341 157-230 (284)
17 PF05222 AlaDh_PNT_N: Alanine 63.6 27 0.00058 31.1 6.8 93 273-369 10-116 (136)
18 cd01972 Nitrogenase_VnfE_like 63.2 17 0.00038 38.3 6.5 98 262-362 161-265 (426)
19 cd02696 MurNAc-LAA N-acetylmur 63.0 21 0.00045 32.3 6.2 47 281-327 33-82 (172)
20 PRK14191 bifunctional 5,10-met 61.8 23 0.0005 35.8 6.7 71 261-341 156-229 (285)
21 PLN02897 tetrahydrofolate dehy 60.1 30 0.00065 35.9 7.3 72 261-340 213-285 (345)
22 PRK14170 bifunctional 5,10-met 59.7 33 0.00072 34.6 7.4 70 261-340 156-228 (284)
23 TIGR02883 spore_cwlD N-acetylm 59.4 26 0.00057 32.7 6.3 47 281-327 34-97 (189)
24 PF01520 Amidase_3: N-acetylmu 59.3 17 0.00036 32.9 4.9 47 281-327 32-81 (175)
25 PRK14182 bifunctional 5,10-met 58.7 37 0.0008 34.3 7.5 70 261-340 156-228 (282)
26 TIGR02853 spore_dpaA dipicolin 58.1 46 0.001 33.4 8.2 80 281-365 165-259 (287)
27 PRK14183 bifunctional 5,10-met 57.6 39 0.00084 34.1 7.5 71 261-341 156-229 (281)
28 PRK14169 bifunctional 5,10-met 57.4 40 0.00086 34.1 7.5 69 262-340 156-227 (282)
29 PRK14171 bifunctional 5,10-met 56.9 40 0.00086 34.1 7.4 71 262-340 159-230 (288)
30 PRK14177 bifunctional 5,10-met 56.8 41 0.0009 34.0 7.5 72 261-340 158-230 (284)
31 PRK08306 dipicolinate synthase 56.8 46 0.001 33.5 8.0 94 263-367 153-262 (296)
32 PRK08306 dipicolinate synthase 56.6 57 0.0012 32.8 8.6 82 280-368 15-121 (296)
33 PRK14176 bifunctional 5,10-met 56.5 40 0.00087 34.1 7.4 73 261-341 163-236 (287)
34 PLN02616 tetrahydrofolate dehy 56.3 38 0.00082 35.4 7.3 72 261-340 230-302 (364)
35 PRK14186 bifunctional 5,10-met 55.7 42 0.00091 34.1 7.4 69 262-340 158-229 (297)
36 PRK14172 bifunctional 5,10-met 55.5 43 0.00094 33.7 7.4 70 261-340 157-229 (278)
37 cd01980 Chlide_reductase_Y Chl 55.5 33 0.00071 36.2 7.0 95 262-363 159-254 (416)
38 PF00148 Oxidored_nitro: Nitro 55.2 21 0.00045 37.0 5.3 98 260-361 142-243 (398)
39 PRK14166 bifunctional 5,10-met 55.1 43 0.00094 33.8 7.4 70 261-340 156-228 (282)
40 cd01079 NAD_bind_m-THF_DH NAD 54.9 32 0.00069 32.9 6.0 77 260-340 60-155 (197)
41 PRK14180 bifunctional 5,10-met 54.9 43 0.00094 33.8 7.3 70 261-340 157-229 (282)
42 COG0190 FolD 5,10-methylene-te 54.3 35 0.00075 34.5 6.4 71 260-340 154-227 (283)
43 PRK10319 N-acetylmuramoyl-l-al 54.0 32 0.00069 34.8 6.2 56 283-343 92-150 (287)
44 PRK10792 bifunctional 5,10-met 52.7 50 0.0011 33.4 7.3 73 261-341 158-231 (285)
45 PRK14173 bifunctional 5,10-met 52.1 52 0.0011 33.3 7.4 70 261-340 154-226 (287)
46 PLN02516 methylenetetrahydrofo 51.6 54 0.0012 33.4 7.4 70 261-340 166-238 (299)
47 PRK02910 light-independent pro 51.2 40 0.00088 36.7 7.0 101 260-363 156-261 (519)
48 PRK14187 bifunctional 5,10-met 50.1 56 0.0012 33.2 7.3 70 261-340 159-231 (294)
49 cd01981 Pchlide_reductase_B Pc 50.0 64 0.0014 34.0 8.1 100 261-363 161-265 (430)
50 PRK14181 bifunctional 5,10-met 48.9 63 0.0014 32.7 7.4 70 261-340 152-228 (287)
51 PF00389 2-Hacid_dh: D-isomer 47.5 45 0.00097 28.9 5.5 77 280-364 9-86 (133)
52 PRK14168 bifunctional 5,10-met 46.1 69 0.0015 32.6 7.2 70 261-340 160-236 (297)
53 PRK14174 bifunctional 5,10-met 45.5 72 0.0016 32.4 7.2 70 261-340 158-234 (295)
54 PRK14167 bifunctional 5,10-met 43.7 73 0.0016 32.4 7.0 70 261-340 156-232 (297)
55 PRK14193 bifunctional 5,10-met 43.6 82 0.0018 31.9 7.3 70 261-340 157-231 (284)
56 PRK13337 putative lipid kinase 43.2 1.8E+02 0.0039 29.0 9.8 68 277-344 19-92 (304)
57 PRK12548 shikimate 5-dehydroge 41.2 1.3E+02 0.0028 30.1 8.3 93 264-364 152-255 (289)
58 PRK14184 bifunctional 5,10-met 41.0 82 0.0018 31.9 6.8 70 262-341 157-233 (286)
59 PRK14192 bifunctional 5,10-met 40.9 74 0.0016 32.0 6.5 68 264-341 161-231 (283)
60 TIGR03702 lip_kinase_YegS lipi 40.6 2.1E+02 0.0046 28.4 9.8 67 278-344 15-89 (293)
61 PRK14185 bifunctional 5,10-met 40.2 1E+02 0.0022 31.3 7.3 69 262-340 157-232 (293)
62 PF13271 DUF4062: Domain of un 39.4 74 0.0016 25.6 5.2 44 281-324 17-63 (83)
63 COG3959 Transketolase, N-termi 39.4 51 0.0011 32.4 4.8 48 264-314 173-226 (243)
64 CHL00076 chlB photochlorophyll 38.6 1.1E+02 0.0024 33.3 7.9 101 260-363 161-266 (513)
65 TIGR02667 moaB_proteo molybden 38.0 97 0.0021 28.4 6.3 72 262-333 4-83 (163)
66 PRK13054 lipid kinase; Reviewe 37.4 2.5E+02 0.0055 27.9 9.8 81 264-344 5-93 (300)
67 cd01968 Nitrogenase_NifE_I Nit 36.5 79 0.0017 33.1 6.2 97 262-363 158-257 (410)
68 PLN02928 oxidoreductase family 36.0 4.6E+02 0.0099 27.0 11.6 134 281-436 173-338 (347)
69 cd03129 GAT1_Peptidase_E_like 35.5 1.2E+02 0.0027 28.4 6.9 66 260-325 27-92 (210)
70 COG1703 ArgK Putative periplas 35.1 46 0.00099 34.1 3.9 45 281-325 134-178 (323)
71 cd01977 Nitrogenase_VFe_alpha 34.1 2E+02 0.0044 30.2 8.8 97 262-363 162-261 (415)
72 PRK02261 methylaspartate mutas 33.3 1.5E+02 0.0033 26.4 6.6 54 261-316 2-55 (137)
73 PF03358 FMN_red: NADPH-depend 33.1 1.1E+02 0.0025 26.6 5.9 54 264-318 2-75 (152)
74 TIGR00147 lipid kinase, YegS/R 32.9 3.6E+02 0.0077 26.5 10.0 81 264-344 3-92 (293)
75 PF00670 AdoHcyase_NAD: S-aden 32.7 71 0.0015 29.6 4.5 60 282-341 38-110 (162)
76 PRK13059 putative lipid kinase 32.2 3.3E+02 0.0071 27.1 9.6 66 278-344 20-91 (295)
77 PF03575 Peptidase_S51: Peptid 32.2 91 0.002 27.9 5.1 43 280-323 3-45 (154)
78 KOG4698 Uncharacterized conser 31.8 9.9 0.00021 40.8 -1.4 101 274-377 192-294 (475)
79 COG2185 Sbm Methylmalonyl-CoA 30.9 2.2E+02 0.0049 25.9 7.3 51 260-315 10-63 (143)
80 TIGR00507 aroE shikimate 5-deh 30.8 1.7E+02 0.0038 28.6 7.3 51 311-365 176-234 (270)
81 COG1920 Predicted nucleotidylt 30.4 51 0.0011 31.6 3.2 84 277-368 72-163 (210)
82 COG1597 LCB5 Sphingosine kinas 30.3 3.6E+02 0.0079 27.1 9.6 90 266-363 7-104 (301)
83 TIGR01284 alt_nitrog_alph nitr 30.3 70 0.0015 34.3 4.7 97 262-363 199-298 (457)
84 TIGR00177 molyb_syn molybdenum 29.8 85 0.0018 27.9 4.5 53 275-327 25-80 (144)
85 PRK11914 diacylglycerol kinase 29.8 2.3E+02 0.0051 28.2 8.1 68 276-344 25-97 (306)
86 PRK13055 putative lipid kinase 29.8 3.5E+02 0.0077 27.5 9.5 68 277-344 20-94 (334)
87 PRK05568 flavodoxin; Provision 29.6 1E+02 0.0022 26.7 4.9 50 262-318 3-53 (142)
88 TIGR02015 BchY chlorophyllide 28.7 83 0.0018 33.4 4.8 81 278-363 178-260 (422)
89 PF12689 Acid_PPase: Acid Phos 28.6 1.1E+02 0.0024 28.4 5.1 88 266-365 35-125 (169)
90 PF10087 DUF2325: Uncharacteri 28.5 1.5E+02 0.0033 24.4 5.5 67 278-365 11-79 (97)
91 cd01078 NAD_bind_H4MPT_DH NADP 28.4 2E+02 0.0043 26.5 6.9 71 263-340 53-128 (194)
92 PRK10964 ADP-heptose:LPS hepto 27.8 2.4E+02 0.0052 28.1 7.8 80 262-343 178-281 (322)
93 PRK13057 putative lipid kinase 27.5 3.2E+02 0.0069 26.9 8.6 66 278-344 14-83 (287)
94 PF08659 KR: KR domain; Inter 27.3 2.2E+02 0.0048 25.9 6.9 64 262-327 25-93 (181)
95 TIGR00640 acid_CoA_mut_C methy 27.3 2.1E+02 0.0046 25.3 6.5 48 282-331 22-70 (132)
96 PRK03094 hypothetical protein; 27.0 94 0.002 25.5 3.8 22 278-299 9-30 (80)
97 PF03193 DUF258: Protein of un 26.4 1.2E+02 0.0025 28.1 4.8 53 280-332 2-58 (161)
98 cd01976 Nitrogenase_MoFe_alpha 26.4 1.5E+02 0.0032 31.4 6.2 97 262-363 172-271 (421)
99 cd01965 Nitrogenase_MoFe_beta_ 26.2 1.2E+02 0.0027 31.9 5.6 100 261-363 154-274 (428)
100 PRK02842 light-independent pro 26.2 1.5E+02 0.0033 31.3 6.3 94 262-363 166-262 (427)
101 PF02737 3HCDH_N: 3-hydroxyacy 25.8 68 0.0015 29.7 3.2 76 281-363 95-173 (180)
102 TIGR01862 N2-ase-Ialpha nitrog 25.7 1.4E+02 0.0031 31.7 6.0 97 262-363 191-290 (443)
103 cd03146 GAT1_Peptidase_E Type 25.4 1.4E+02 0.0031 28.2 5.4 62 260-324 29-91 (212)
104 TIGR00561 pntA NAD(P) transhyd 24.9 4.7E+02 0.01 28.7 9.8 95 273-371 12-118 (511)
105 PRK00258 aroE shikimate 5-dehy 24.2 2.7E+02 0.0059 27.4 7.4 52 309-364 181-240 (278)
106 PF03698 UPF0180: Uncharacteri 23.7 86 0.0019 25.7 3.0 43 278-331 9-51 (80)
107 TIGR01753 flav_short flavodoxi 23.5 1.3E+02 0.0029 25.6 4.5 47 265-318 3-50 (140)
108 PRK10431 N-acetylmuramoyl-l-al 23.0 1.6E+02 0.0034 31.7 5.7 68 260-327 188-275 (445)
109 smart00852 MoCF_biosynth Proba 23.0 1.4E+02 0.003 26.0 4.4 52 277-328 18-72 (135)
110 PRK15438 erythronate-4-phospha 22.9 1.6E+02 0.0034 31.1 5.5 74 262-341 116-207 (378)
111 PF02310 B12-binding: B12 bind 22.9 3.7E+02 0.0081 22.2 7.0 51 264-316 2-54 (121)
112 TIGR01501 MthylAspMutase methy 22.7 1.1E+02 0.0024 27.4 3.8 39 281-321 20-59 (134)
113 TIGR01278 DPOR_BchB light-inde 22.3 2E+02 0.0043 31.3 6.4 100 261-363 157-264 (511)
114 PRK09424 pntA NAD(P) transhydr 21.8 3.3E+02 0.0071 29.9 7.9 94 273-371 13-119 (509)
115 PF01976 DUF116: Protein of un 21.6 2.1E+02 0.0045 26.3 5.5 39 279-320 75-113 (158)
116 TIGR01283 nifE nitrogenase mol 21.6 1.7E+02 0.0038 31.1 5.7 96 262-362 197-295 (456)
117 PRK09424 pntA NAD(P) transhydr 21.2 2.9E+02 0.0064 30.2 7.4 62 280-341 198-285 (509)
118 cd00758 MoCF_BD MoCF_BD: molyb 21.1 1.5E+02 0.0032 25.9 4.3 52 276-327 18-72 (133)
119 TIGR02201 heptsyl_trn_III lipo 21.0 1.3E+02 0.0029 30.2 4.5 40 301-342 248-287 (344)
120 COG3769 Predicted hydrolase (H 20.9 1.8E+02 0.004 28.7 5.0 53 279-344 28-80 (274)
121 PRK00257 erythronate-4-phospha 20.8 1.8E+02 0.004 30.5 5.6 73 263-341 117-207 (381)
122 COG0169 AroE Shikimate 5-dehyd 20.5 2.5E+02 0.0055 28.3 6.3 87 262-363 150-244 (283)
123 PF02423 OCD_Mu_crystall: Orni 20.3 1.5E+02 0.0032 30.1 4.6 70 263-344 154-227 (313)
124 PRK07308 flavodoxin; Validated 20.1 1.6E+02 0.0034 25.9 4.3 36 262-299 3-39 (146)
125 cd08184 Fe-ADH3 Iron-containin 20.1 2E+02 0.0043 29.7 5.6 43 280-322 39-90 (347)
126 TIGR02193 heptsyl_trn_I lipopo 20.0 4.3E+02 0.0093 26.1 7.9 79 261-341 178-280 (319)
127 PRK11921 metallo-beta-lactamas 20.0 1.8E+02 0.0038 30.4 5.3 57 259-318 246-305 (394)
No 1
>KOG4698 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.4e-80 Score=630.48 Aligned_cols=386 Identities=49% Similarity=0.819 Sum_probs=356.1
Q ss_pred CCCceeecCCCCCcceeEEeCcEEeeCCCceEEEEecCCCcccccccchhhcccccccccCCCCCCcccccCccceeEEE
Q 013451 11 FTGTICCDRSGIRTDVCIMKGDVRTNSASSSIFLYKNTNGFINYVSSMVEEKELQHEKIRPYTRKWETSVMDTIDELDLV 90 (442)
Q Consensus 11 ~~~~~~Cd~s~~r~d~C~~~gdvr~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~i~py~Rk~~~~~m~~v~e~~v~ 90 (442)
.++.++||+++.++|+|+++||+|+|+.++|+++...... ++..+.+|+||||+||||.++|+.|+|++|.
T Consensus 82 e~~~~~C~~~g~~s~~c~~kg~~r~h~~~~~~~~~~~~~~---------~~s~~~~e~ikpy~rk~~~~vmp~vre~~l~ 152 (475)
T KOG4698|consen 82 EDSSFFCDRSGTRSDFCEMKGDVRTHPDSSTVLLTLGRLL---------TFSGRLVEKIKPYTRKGETWVMPEVRELNLL 152 (475)
T ss_pred CCceEEeeccccccchhhhcCccccCcchhhhhhhccchh---------hhccccchhcccccccccccccccccccceE
Confidence 4556999999999999999999999999999987765311 1234688999999999999999999999998
Q ss_pred EecCCCcCCCCCceEeeccEEEEEeCCcccCchhhhhhchhhHHhhhh--hcCCeEEEEEecccchhhhhHHHHHHhhCC
Q 013451 91 VKKENETANHHCDVVHDVPAVFFSTGGYTGNVYHEFNDGILPLYITSQ--HLKKKVVFVILEYHNWWIMKYGDILSRLSD 168 (442)
Q Consensus 91 ~~~~~~~~~~~C~~~h~~Pavvfs~~gy~~N~~H~~~D~liPlf~t~~--~~~~~v~~vi~d~~~ww~~ky~~ll~~lS~ 168 (442)
.. ..+...+|+++|++||+||++|||+||.||+|+|+++|||+|.+ .|+++|++++++.++||..||.+++++||+
T Consensus 153 ~~--~~~~~r~c~v~~~~pa~vfs~Gg~tgn~yhdf~d~~ipL~it~~~~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn 230 (475)
T KOG4698|consen 153 VR--PGSEIRRCDVNHEVPAIVFSTGGYTGNEYHDFNDGIIPLFITEAELRFNKEVQFLITETHSWWDMKFGDVVRQLSN 230 (475)
T ss_pred Ec--CCcccceeeeecccchheeecCCcchhhHHHHHhhhhhhhcccchhcccccEEEEEEEcchhhhhhHHHHHHhcCC
Confidence 32 25667899999999999999999999999999999999999999 789999999999999999999999999999
Q ss_pred CCccccCCCCcceecceeEEecccccccccCCCCCCCC--ccHHHHHHHHHHhcCccccccchhHHHHHHhhhcCCCCCC
Q 013451 169 YPPIDFSGDKRTHCFPEAIVGLRIHDELTVDPSLMRGN--KNAIDFRNVLDQAYWPRIRGLIQDEEREAREKLSLSPSSD 246 (442)
Q Consensus 169 ~~iidl~~d~~~~CF~~aiVGl~~h~~l~idp~~~~~~--~s~~dF~~flr~ay~~~~~~l~~~~~~~~~~rl~~~~s~~ 246 (442)
|++++++++..+|||.+++|||..|.++++||...+++ ++|.+|++||+.+|++++.. . ++|
T Consensus 231 ~~~v~~~~~~~ThcF~~~~vgL~~h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i~~------------~--~~t-- 294 (475)
T KOG4698|consen 231 YPVVDFDAELRTHCFKEAIVGLVSHFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRIPE------------A--NVT-- 294 (475)
T ss_pred CceEEecCCceEEEeeeeeeeeeecccccccCCcCCCccccccccHHHHHHHHhcccccc------------c--ccC--
Confidence 99999999999999999999999999999999988865 89999999999999887521 0 121
Q ss_pred CCCCccccccCCCCCCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhhh
Q 013451 247 PSFKNVKEVQGDQSKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMT 326 (442)
Q Consensus 247 p~~~~~~~~~~~~~~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgLt 326 (442)
...+.++||+++++|.++|.|+||+||.+++++.||+|.++++++ +++.+|+++.+++|||+|+||||||
T Consensus 295 ---------~~~~~kkpri~~lsR~~~r~Ilne~el~~~~~~~gf~v~~~~~~~-t~v~~~~~i~~s~~vmiGvHGa~lt 364 (475)
T KOG4698|consen 295 ---------APEPWKKPRITILSRAGSRAILNEDELPRMLEDIGFEVSVLRPDR-TEVAKQLRITNSSDVMIGVHGAGLT 364 (475)
T ss_pred ---------CcChhhCCceEEEecccchhhhcchhhhHHHHhCCCceEEecccc-cchhhhhheeeccceeeeccCccce
Confidence 233556899999999999999999999999999999999999985 9999999999999999999999999
Q ss_pred hhhccCCCcEEEEEeeCC-CCcccccchHhHHhhcCCcEEEEEeccCCCccccccCCCCCccCCCCcccccCccccc-ee
Q 013451 327 HFLFMKPGSVFIQVIPLG-TDWAAETYYGEPARKLGLKYIGYTILPRESSLYDQYDKNDPVLRDPSSVNEKGWQYTK-TI 404 (442)
Q Consensus 327 N~lFm~pgs~vIEI~P~g-~~~~~~~~y~~~A~~~Gl~Y~~y~i~~~Essl~~~y~~~~~v~~dP~~~~~~gw~~~~-~~ 404 (442)
|++|+||++.+|||.|+| .+|.+..+|..+|+.|+++|.+|+|.++||+|.++|++||+++.||.+..++||+.++ .+
T Consensus 365 h~lfl~~~~~~iqi~pcg~~~w~a~~a~~~p~k~~~l~y~~ykI~~~es~l~~~y~~d~~~v~dp~s~~~~~f~~~k~~~ 444 (475)
T KOG4698|consen 365 HLLFLPPWAGVIQIYPCGDPGWAAKLARLRPAKYMTLEYAEYKIRAEESELYHKYGGDNTIVFDPISFQKKGFEETKKKV 444 (475)
T ss_pred eEEecCCcceEEEEEECCCccchhhhhhccccceeccccceeEEeecccceeeeccCCCceecccceeccccceeeeeee
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999987 89
Q ss_pred ecCCCceEEehHHHHHHHHHHHHHHHHhh
Q 013451 405 YLDGQNVRLNLRRFQKRLVRAYDYSINRI 433 (442)
Q Consensus 405 yl~~Qdv~vDi~rF~~~L~~al~~~~~~~ 433 (442)
||..|+|++|+.||++.+.+|+...+.++
T Consensus 445 yl~~q~v~ld~nRf~~~~~~a~~~~~~~~ 473 (475)
T KOG4698|consen 445 YLELQAVRLDINRFRKTLVKAYLKEITQL 473 (475)
T ss_pred eEeEeeeehhhhhcccchhHHHHHHHHhh
Confidence 99999999999999999999999988764
No 2
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=99.96 E-value=8.4e-28 Score=225.06 Aligned_cols=198 Identities=25% Similarity=0.398 Sum_probs=141.6
Q ss_pred cCchhhhhhchhhHHhhhhhc--CCeEEEEEecccchhhhhH-HHHHHhhCC-CCccccCCCCcceecceeEEecccccc
Q 013451 120 GNVYHEFNDGILPLYITSQHL--KKKVVFVILEYHNWWIMKY-GDILSRLSD-YPPIDFSGDKRTHCFPEAIVGLRIHDE 195 (442)
Q Consensus 120 ~N~~H~~~D~liPlf~t~~~~--~~~v~~vi~d~~~ww~~ky-~~ll~~lS~-~~iidl~~d~~~~CF~~aiVGl~~h~~ 195 (442)
.|+||++.| ++|.+.+++++ +.+..+++.+.. ...+| .++|+.|.- ...+.+ ..++..||++++++......
T Consensus 1 ~~~gH~l~d-~l~~l~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~l~~lg~~~~~i~~-~~~~~~~~~~l~~~~~~~~~ 76 (206)
T PF04577_consen 1 NNFGHFLID-FLPRLWYLPQYIPDSDIIILVPDDF--DNPPFIREILELLGIPENRIKI-DSDEPVCFERLIVPSPPYSP 76 (206)
T ss_pred CCCcEEHHH-HHHHHHHHHHHCCCCCeEEEEcCCc--cccHHHHHHHHHcCCCccEEEE-cCCCeEEECEEEEeCCCccc
Confidence 478899999 56777888775 444455555411 12233 367776654 223322 33478999999987653311
Q ss_pred cccCCCCCCCCccHHHHHHHHHHhcCccccccchhHHHHHHhhhcCCCCCCCCCCccccccCCCCCCCEEEEEEe--CCC
Q 013451 196 LTVDPSLMRGNKNAIDFRNVLDQAYWPRIRGLIQDEEREAREKLSLSPSSDPSFKNVKEVQGDQSKKPKLVILSR--NGS 273 (442)
Q Consensus 196 l~idp~~~~~~~s~~dF~~flr~ay~~~~~~l~~~~~~~~~~rl~~~~s~~p~~~~~~~~~~~~~~~prv~ii~R--~~~ 273 (442)
.. ........|++++++.+. . ....+||++|++| ++.
T Consensus 77 ~~------~~~~~~~~~~~~~~~~~~---------------------~--------------~~~~~p~i~~i~R~~~~~ 115 (206)
T PF04577_consen 77 SD------FNPSFFPALRDRIRRKLN---------------------L--------------PPPKRPRILYISRRKSGS 115 (206)
T ss_pred cC------cCchHHHHHHHHHHHHhC---------------------C--------------cccCCCeEEEEecCCCCC
Confidence 00 011122356666554441 1 1114679999999 556
Q ss_pred ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhccCCCcEEEEEeeCCCCcccccch
Q 013451 274 RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYY 353 (442)
Q Consensus 274 R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgLtN~lFm~pgs~vIEI~P~g~~~~~~~~y 353 (442)
|+|.||+||++.+++.||+++ +++ ++++.||++++++|||+||+|||||+|++||+||+.||||+|... ...+|
T Consensus 116 R~i~Ne~el~~~l~~~~~~~v--~~~-~~s~~eqv~~~~~a~viig~hGs~l~n~~F~~~~s~viei~~~~~---~~~~~ 189 (206)
T PF04577_consen 116 RRILNEDELLEILKKYGFEVV--DPE-DLSFEEQVKLFASAKVIIGPHGSALTNLLFMPPGSTVIEIFPPNY---YNRHY 189 (206)
T ss_pred CcCcCHHHHHHHHhhCCeEEE--eCC-CCCHHHHHHHhcCCCEEEecCchHhheeeecCCCCEEEEEeCCCC---CCHHH
Confidence 999999999999999997755 566 799999999999999999999999999999999999999987762 33459
Q ss_pred HhHHhhcCCcEEEEE
Q 013451 354 GEPARKLGLKYIGYT 368 (442)
Q Consensus 354 ~~~A~~~Gl~Y~~y~ 368 (442)
..+|..+|++|..+.
T Consensus 190 ~~~a~~~~~~y~~v~ 204 (206)
T PF04577_consen 190 RNLAQALGIHYYAVY 204 (206)
T ss_pred HHHHHHcCCeEEEEe
Confidence 999999999997653
No 3
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=99.74 E-value=5.4e-17 Score=160.33 Aligned_cols=233 Identities=19% Similarity=0.272 Sum_probs=150.8
Q ss_pred EEEEeCCcccCchhhhhhchhhHHhhhhhcC--CeEEEEEecccchhhhhHHHHHHhh-CCCCccccCCCCcceecceeE
Q 013451 111 VFFSTGGYTGNVYHEFNDGILPLYITSQHLK--KKVVFVILEYHNWWIMKYGDILSRL-SDYPPIDFSGDKRTHCFPEAI 187 (442)
Q Consensus 111 vvfs~~gy~~N~~H~~~D~liPlf~t~~~~~--~~v~~vi~d~~~ww~~ky~~ll~~l-S~~~iidl~~d~~~~CF~~ai 187 (442)
.||.-.|+..||-|.+.| .+|..+.++..+ .+--++.....+|- .+++..+ .+-++|.- ...+|-..++
T Consensus 123 ~v~~~~~~~~~Yghflle-~Lp~l~~i~~l~i~~~~pLl~P~~~~wq----adll~m~~~~~~ii~~---~p~V~~~~av 194 (368)
T COG4421 123 AVFKEWGFSFEYGHFLLE-NLPYLWQIKSLGILSDPPLLYPRLTEWQ----ADLLFMAGPDCPIIAT---APAVPLGPAV 194 (368)
T ss_pred ceecccccccccchhHHh-hhHHHHHHhhhcccccCcccCCcchHHH----HhHHhhcCCCCceeec---ccceeecccc
Confidence 356666778999999999 778877777653 12223222222221 2677765 45566543 3445544444
Q ss_pred EecccccccccCCCCCCCCccHHHHHHHHHHhcCccccccchhHHHHHHhhhcCCCCCCCCCCccccccCCCCCCCEEEE
Q 013451 188 VGLRIHDELTVDPSLMRGNKNAIDFRNVLDQAYWPRIRGLIQDEEREAREKLSLSPSSDPSFKNVKEVQGDQSKKPKLVI 267 (442)
Q Consensus 188 VGl~~h~~l~idp~~~~~~~s~~dF~~flr~ay~~~~~~l~~~~~~~~~~rl~~~~s~~p~~~~~~~~~~~~~~~prv~i 267 (442)
+... .+-.-++.++...- +|... ..++...++.+|
T Consensus 195 l~~~---------------~s~~~~ha~l~~~~-----------eR~~~-------------------~~~~~~~adkiY 229 (368)
T COG4421 195 LPVS---------------GSPRYTHALLAWKD-----------ERVIA-------------------IKGKGKVADKIY 229 (368)
T ss_pred cCCC---------------CCchhhhHHHHHHh-----------hhhhc-------------------ccCCCCCcceEE
Confidence 3211 11122334444222 11110 123556778899
Q ss_pred EEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhccCCCcEEEEEeeCCC
Q 013451 268 LSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLGT 345 (442)
Q Consensus 268 i~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgLtN~lFm~pgs~vIEI~P~g~ 345 (442)
|||+.. |+++||+||...+++.||.++- ++ +++..||++||+.|.|+||.||+||.|++|+++|+.||||-|-..
T Consensus 230 VSR~~qS~R~lvnE~evE~~~q~~G~~IVr--PE-tl~~~eQ~~LFr~AkvIvG~~GS~laNavF~~~~~kvvEI~~~~~ 306 (368)
T COG4421 230 VSRKAQSMRVLVNEEEVERLLQRSGLTIVR--PE-TLGPREQARLFRKAKVIVGPHGSGLANAVFAAPGCKVVEIQPGTT 306 (368)
T ss_pred EechhhHHHHhhCHHHHHHHHHhcCcEEEe--ch-hcCHHHHHHHhhcceEEeccccchhhhheecCCCceEEEeccCCC
Confidence 999754 9999999999999999999874 66 799999999999999999999999999999999999999999432
Q ss_pred CcccccchH-hHHhhcCCcEEEEEeccCCCccccccCCCCCccCCCCcccccCccccceeecCCCceEEehHHHHHHHHH
Q 013451 346 DWAAETYYG-EPARKLGLKYIGYTILPRESSLYDQYDKNDPVLRDPSSVNEKGWQYTKTIYLDGQNVRLNLRRFQKRLVR 424 (442)
Q Consensus 346 ~~~~~~~y~-~~A~~~Gl~Y~~y~i~~~Essl~~~y~~~~~v~~dP~~~~~~gw~~~~~~yl~~Qdv~vDi~rF~~~L~~ 424 (442)
. .+.++- +.+.+-|..|..| +.+.+ +.+. -..++.++++++.+.+..
T Consensus 307 ~--~~s~~vr~~~~~~g~~~~~~-ve~q~---------nk~~--------------------~~~pl~~~l~~~~af~~~ 354 (368)
T COG4421 307 N--FRSFWVRMANYMSGDYYPGY-VEHQT---------NKEA--------------------LEDPLKINLDEAIAFLRR 354 (368)
T ss_pred c--chHHHHHHhhhcccceeecc-cccCC---------CCCC--------------------CCCcccccchHHHHHhhh
Confidence 2 233444 4445555555543 33221 1111 135677788888888887
Q ss_pred HHHHHHH
Q 013451 425 AYDYSIN 431 (442)
Q Consensus 425 al~~~~~ 431 (442)
...+++-
T Consensus 355 ~~~~all 361 (368)
T COG4421 355 HDRKALL 361 (368)
T ss_pred hhHHHHh
Confidence 7666654
No 4
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=86.35 E-value=3.1 Score=38.34 Aligned_cols=71 Identities=24% Similarity=0.419 Sum_probs=47.4
Q ss_pred CCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEEEE
Q 013451 262 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 340 (442)
Q Consensus 262 ~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~vIEI 340 (442)
.-++++|.|... + -.-+..+|.+.|..|.+.... +..+.+ ..++|||+|+.-| +++-..=|.+||++||-+
T Consensus 36 Gk~v~VvGrs~~---V-G~Pla~lL~~~~atVt~~h~~-T~~l~~---~~~~ADIVVsa~G~~~~i~~~~ik~gavVIDv 107 (160)
T PF02882_consen 36 GKKVVVVGRSNI---V-GKPLAMLLLNKGATVTICHSK-TKNLQE---ITRRADIVVSAVGKPNLIKADWIKPGAVVIDV 107 (160)
T ss_dssp T-EEEEE-TTTT---T-HHHHHHHHHHTT-EEEEE-TT-SSSHHH---HHTTSSEEEE-SSSTT-B-GGGS-TTEEEEE-
T ss_pred CCEEEEECCcCC---C-ChHHHHHHHhCCCeEEeccCC-CCcccc---eeeeccEEeeeeccccccccccccCCcEEEec
Confidence 347899998864 1 125777888889999987754 445655 4679999998888 678888899999999865
No 5
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=86.18 E-value=3.7 Score=37.01 Aligned_cols=70 Identities=21% Similarity=0.258 Sum_probs=52.5
Q ss_pred CCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEEE
Q 013451 261 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVFI 338 (442)
Q Consensus 261 ~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAg-LtN~lFm~pgs~vI 338 (442)
..-+++++.|+.. .-..+...|.+.|..|.+.+.. +.++.+ .+++|||+|..-|.. +-..=|++||++||
T Consensus 27 ~gk~v~VvGrs~~----vG~pla~lL~~~gatV~~~~~~-t~~l~~---~v~~ADIVvsAtg~~~~i~~~~ikpGa~Vi 97 (140)
T cd05212 27 DGKKVLVVGRSGI----VGAPLQCLLQRDGATVYSCDWK-TIQLQS---KVHDADVVVVGSPKPEKVPTEWIKPGATVI 97 (140)
T ss_pred CCCEEEEECCCch----HHHHHHHHHHHCCCEEEEeCCC-CcCHHH---HHhhCCEEEEecCCCCccCHHHcCCCCEEE
Confidence 3458889987764 3346777788889999998754 345554 689999999988865 34556899999998
No 6
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.27 E-value=3 Score=41.94 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=55.1
Q ss_pred CCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEEE
Q 013451 261 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQ 339 (442)
Q Consensus 261 ~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~vIE 339 (442)
..-+++++.|.... -.-+...+...|..|.+.... + ...-+.+++||++|+.=| +++-..=+.+||++||.
T Consensus 151 ~Gk~V~ViGrs~~v----Grpla~lL~~~~atVtv~hs~-t---~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~GavVID 222 (279)
T PRK14178 151 AGKRAVVVGRSIDV----GRPMAALLLNADATVTICHSK-T---ENLKAELRQADILVSAAGKAGFITPDMVKPGATVID 222 (279)
T ss_pred CCCEEEEECCCccc----cHHHHHHHHhCCCeeEEEecC-h---hHHHHHHhhCCEEEECCCcccccCHHHcCCCcEEEE
Confidence 45688999987641 125667777889999887643 2 233456789999999999 88877778899999998
Q ss_pred Ee
Q 013451 340 VI 341 (442)
Q Consensus 340 I~ 341 (442)
+-
T Consensus 223 Vg 224 (279)
T PRK14178 223 VG 224 (279)
T ss_pred ee
Confidence 75
No 7
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.89 E-value=14 Score=37.60 Aligned_cols=72 Identities=19% Similarity=0.336 Sum_probs=52.4
Q ss_pred CCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEEE
Q 013451 261 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQ 339 (442)
Q Consensus 261 ~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~vIE 339 (442)
..-++++|.|.+. --.-++..|.+.|++|.+.... +.++. ++.+.|||+|..=| +.+-...|++||++||.
T Consensus 157 ~Gk~V~viGrs~~----mG~PmA~~L~~~g~tVtv~~~r-T~~l~---e~~~~ADIVIsavg~~~~v~~~~lk~GavVID 228 (296)
T PRK14188 157 SGLNAVVIGRSNL----VGKPMAQLLLAANATVTIAHSR-TRDLP---AVCRRADILVAAVGRPEMVKGDWIKPGATVID 228 (296)
T ss_pred CCCEEEEEcCCcc----hHHHHHHHHHhCCCEEEEECCC-CCCHH---HHHhcCCEEEEecCChhhcchheecCCCEEEE
Confidence 3458899998864 1124677777889999998532 34454 45678999887766 56777889999999987
Q ss_pred E
Q 013451 340 V 340 (442)
Q Consensus 340 I 340 (442)
+
T Consensus 229 v 229 (296)
T PRK14188 229 V 229 (296)
T ss_pred c
Confidence 6
No 8
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=74.57 E-value=5.8 Score=41.96 Aligned_cols=100 Identities=16% Similarity=0.253 Sum_probs=69.3
Q ss_pred CCCEEEEEEeCC---CccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeec---hhhhhhhhccCCC
Q 013451 261 KKPKLVILSRNG---SRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVH---GAAMTHFLFMKPG 334 (442)
Q Consensus 261 ~~prv~ii~R~~---~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvH---GAgLtN~lFm~pg 334 (442)
.+++|-+|.... .-.--|..|+.+.|++.|.++..+-+. ..++ ++++-+.+|.+-|.++ |-.++..|.-+=|
T Consensus 154 ~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~-~~~~-~ei~~~~~A~~niv~~~~~g~~~a~~L~~~~g 231 (427)
T cd01971 154 EPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGP-ESNG-EELRSIPKAQFNLVLSPWVGLEFAQHLEEKYG 231 (427)
T ss_pred CCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECC-CCCH-HHHHhcccCcEEEEEcHhhHHHHHHHHHHHhC
Confidence 355666776431 112257899999999999999777554 3565 7788889998655555 4456666666667
Q ss_pred cEEEEE--eeCCCCcccccchHhHHhhcCCc
Q 013451 335 SVFIQV--IPLGTDWAAETYYGEPARKLGLK 363 (442)
Q Consensus 335 s~vIEI--~P~g~~~~~~~~y~~~A~~~Gl~ 363 (442)
.-.+.. +|+|++ ....++..+++..|+.
T Consensus 232 iP~i~~~~~P~G~~-~t~~~l~~i~~~~g~~ 261 (427)
T cd01971 232 QPYIHSPTLPIGAK-ATAEFLRQVAKFAGIE 261 (427)
T ss_pred CceEecCCCccCHH-HHHHHHHHHHHHhCCC
Confidence 666665 789953 2356889999999975
No 9
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.39 E-value=18 Score=36.85 Aligned_cols=71 Identities=20% Similarity=0.347 Sum_probs=53.3
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~v 337 (442)
..-++++|.|.+. + -+...|.+.|++|.+..-. +.+++ ++.++|||+|.+=| +++....|++||++|
T Consensus 158 ~Gk~V~vIG~s~ivG~------PmA~~L~~~gatVtv~~~~-t~~l~---e~~~~ADIVIsavg~~~~v~~~~ik~GaiV 227 (301)
T PRK14194 158 TGKHAVVIGRSNIVGK------PMAALLLQAHCSVTVVHSR-STDAK---ALCRQADIVVAAVGRPRLIDADWLKPGAVV 227 (301)
T ss_pred CCCEEEEECCCCccHH------HHHHHHHHCCCEEEEECCC-CCCHH---HHHhcCCEEEEecCChhcccHhhccCCcEE
Confidence 4558899999753 3 4667778889999998643 33444 45688999887766 567778899999999
Q ss_pred EEEe
Q 013451 338 IQVI 341 (442)
Q Consensus 338 IEI~ 341 (442)
|.+-
T Consensus 228 IDvg 231 (301)
T PRK14194 228 IDVG 231 (301)
T ss_pred EEec
Confidence 9873
No 10
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=70.95 E-value=15 Score=37.89 Aligned_cols=99 Identities=15% Similarity=0.316 Sum_probs=70.1
Q ss_pred CCCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEee---chhhhhhhhccCCCcE
Q 013451 260 SKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGV---HGAAMTHFLFMKPGSV 336 (442)
Q Consensus 260 ~~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGv---HGAgLtN~lFm~pgs~ 336 (442)
..++.+-+|.-... ..-|..|+.+.|++.|++|..+-+. ..+++| ++-+.+|.+-|.+ +|..++..|=-+-|.-
T Consensus 150 ~~~~~vNlig~~~~-~~~d~~el~~ll~~~G~~v~~~~~~-~~s~~~-i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~p 226 (399)
T cd00316 150 TEPGSVNLIGGYNL-GGGDLRELKRLLEEMGIRVNALFDG-GTTVEE-LRELGNAKLNLVLCRESGLYLARYLEEKYGIP 226 (399)
T ss_pred CCCCcEEEECCCCC-chhhHHHHHHHHHHcCCcEEEEcCC-CCCHHH-HHhhccCcEEEEecHhHHHHHHHHHHHHhCCC
Confidence 34566667764421 1158899999999999999887554 356655 5567788877777 5677777775566766
Q ss_pred EEEEeeCCCCcccccchHhHHhhcCC
Q 013451 337 FIQVIPLGTDWAAETYYGEPARKLGL 362 (442)
Q Consensus 337 vIEI~P~g~~~~~~~~y~~~A~~~Gl 362 (442)
.+...|+|++- ...+++.+|+.+|+
T Consensus 227 ~~~~~p~G~~~-t~~~l~~i~~~~g~ 251 (399)
T cd00316 227 YILINPIGLEA-TDAFLRKLAELFGI 251 (399)
T ss_pred eEEeCCcCHHH-HHHHHHHHHHHhCC
Confidence 67777999543 35689999999995
No 11
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.70 E-value=22 Score=35.89 Aligned_cols=72 Identities=21% Similarity=0.330 Sum_probs=52.3
Q ss_pred CCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEEE
Q 013451 261 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQ 339 (442)
Q Consensus 261 ~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~vIE 339 (442)
..-++++|.|++. +- .-+...|.+.|..|.+.... +.++ .+..++|||+|.+=| +++....|++||++||.
T Consensus 157 ~Gk~v~vIG~S~i---vG-~Pla~lL~~~gatVtv~~s~-t~~l---~~~~~~ADIVI~avg~~~~v~~~~ik~GavVID 228 (284)
T PRK14179 157 EGKHAVVIGRSNI---VG-KPMAQLLLDKNATVTLTHSR-TRNL---AEVARKADILVVAIGRGHFVTKEFVKEGAVVID 228 (284)
T ss_pred CCCEEEEECCCCc---Cc-HHHHHHHHHCCCEEEEECCC-CCCH---HHHHhhCCEEEEecCccccCCHHHccCCcEEEE
Confidence 4458899999763 11 13666777889999987432 3333 346788999988777 56777889999999998
Q ss_pred E
Q 013451 340 V 340 (442)
Q Consensus 340 I 340 (442)
+
T Consensus 229 v 229 (284)
T PRK14179 229 V 229 (284)
T ss_pred e
Confidence 7
No 12
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=67.15 E-value=12 Score=34.60 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=51.8
Q ss_pred CCCCEEEEEEeCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEE
Q 013451 260 SKKPKLVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVF 337 (442)
Q Consensus 260 ~~~prv~ii~R~~~-R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAg-LtN~lFm~pgs~v 337 (442)
-..-++++|..... . ..+++.|.+.|.+|.+..- +..+..+.+++|||+|+.-|+. +-..=.+++|.++
T Consensus 42 l~gk~vlViG~G~~~G-----~~~a~~L~~~g~~V~v~~r----~~~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~vi 112 (168)
T cd01080 42 LAGKKVVVVGRSNIVG-----KPLAALLLNRNATVTVCHS----KTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVV 112 (168)
T ss_pred CCCCEEEEECCcHHHH-----HHHHHHHhhCCCEEEEEEC----CchhHHHHHhhCCEEEEcCCCCceecHHHccCCeEE
Confidence 34668888987642 1 1367778888998877653 4567778999999999999994 2222235778888
Q ss_pred EEEe
Q 013451 338 IQVI 341 (442)
Q Consensus 338 IEI~ 341 (442)
|.+-
T Consensus 113 IDla 116 (168)
T cd01080 113 IDVG 116 (168)
T ss_pred EEcc
Confidence 8775
No 13
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.68 E-value=21 Score=36.05 Aligned_cols=72 Identities=21% Similarity=0.359 Sum_probs=52.5
Q ss_pred CCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEEE
Q 013451 261 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQ 339 (442)
Q Consensus 261 ~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~vIE 339 (442)
..-++++|.|.+. =-.-+..+|.+.|..|.+.... +.++. ..+++||++|..=| +++-+.=|++||++||-
T Consensus 157 ~Gk~vvViGrs~i----VGkPla~lL~~~~atVt~~hs~-t~~l~---~~~~~ADIVV~avG~~~~i~~~~ik~gavVID 228 (285)
T PRK14189 157 RGAHAVVIGRSNI----VGKPMAMLLLQAGATVTICHSK-TRDLA---AHTRQADIVVAAVGKRNVLTADMVKPGATVID 228 (285)
T ss_pred CCCEEEEECCCCc----cHHHHHHHHHHCCCEEEEecCC-CCCHH---HHhhhCCEEEEcCCCcCccCHHHcCCCCEEEE
Confidence 4568899998864 1125677788889999886543 33343 56789999998777 46667778999999986
Q ss_pred E
Q 013451 340 V 340 (442)
Q Consensus 340 I 340 (442)
+
T Consensus 229 V 229 (285)
T PRK14189 229 V 229 (285)
T ss_pred c
Confidence 5
No 14
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=65.35 E-value=34 Score=35.58 Aligned_cols=97 Identities=10% Similarity=0.093 Sum_probs=67.0
Q ss_pred CCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeec---hhhhhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVH---GAAMTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvH---GAgLtN~lFm~pgs~v 337 (442)
.+..|-||.-.. ..-|..|+.+.|++.|+++..+-+. ..+++|. +-+.+|.+-|.+. |-.++..|-=+=|.-.
T Consensus 159 ~~~~VNiig~~~--~~~d~~el~~lL~~~Gi~~~~~~~~-~~~~~~i-~~~~~A~~niv~~~~~~~~~a~~L~~r~GiP~ 234 (406)
T cd01967 159 TPYDVNIIGEYN--IGGDAWVIKPLLEELGIRVNATFTG-DGTVDEL-RRAHRAKLNLVHCSRSMNYLAREMEERYGIPY 234 (406)
T ss_pred CCCeEEEEeccc--cchhHHHHHHHHHHcCCEEEEEeCC-CCCHHHH-hhCccCCEEEEEChHHHHHHHHHHHHhhCCCE
Confidence 355677776432 2348899999999999999876654 4677664 5588888766654 4445555544456656
Q ss_pred EEEeeCCCCcccccchHhHHhhcCC
Q 013451 338 IQVIPLGTDWAAETYYGEPARKLGL 362 (442)
Q Consensus 338 IEI~P~g~~~~~~~~y~~~A~~~Gl 362 (442)
+...|+|++- ...+++.+++.+|.
T Consensus 235 ~~~~p~G~~~-t~~~l~~l~~~lg~ 258 (406)
T cd01967 235 MEVNFYGFED-TSESLRKIAKFFGD 258 (406)
T ss_pred EEecCCcHHH-HHHHHHHHHHHhCC
Confidence 6677888542 35689999999997
No 15
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.19 E-value=20 Score=36.24 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=53.1
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAg-LtN~lFm~pgs~v 337 (442)
..-++++|.|.+. | -+..+|.+.|..|.+..-. + .+..+.+++|||+|+.=|.. +...=+.+||++|
T Consensus 157 ~Gk~vvVIGrs~~VG~------pla~lL~~~gatVtv~~s~-t---~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gavV 226 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQ------PVSKLLLQKNASVTILHSR-S---KDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVI 226 (286)
T ss_pred CCCEEEEECCCchhHH------HHHHHHHHCCCeEEEEeCC-c---hhHHHHHhhCCEEEECCCCCcccCHHHcCCCcEE
Confidence 3458899998763 3 4667788889999987643 2 23446789999999988887 5555578999999
Q ss_pred EEEe
Q 013451 338 IQVI 341 (442)
Q Consensus 338 IEI~ 341 (442)
|.+=
T Consensus 227 IDvG 230 (286)
T PRK14175 227 IDVG 230 (286)
T ss_pred EEcC
Confidence 8874
No 16
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.09 E-value=22 Score=35.87 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=52.3
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~v 337 (442)
..-++++|.|+.. | -+..+|.+.|..|.+.... +.++. +.+++|||+|+.-| +++-..=|.+||++|
T Consensus 157 ~Gk~vvViGrS~iVG~------Pla~lL~~~~atVt~chs~-t~~l~---~~~~~ADIvI~AvG~p~~i~~~~ik~gavV 226 (284)
T PRK14190 157 SGKHVVVVGRSNIVGK------PVGQLLLNENATVTYCHSK-TKNLA---ELTKQADILIVAVGKPKLITADMVKEGAVV 226 (284)
T ss_pred CCCEEEEECCCCccHH------HHHHHHHHCCCEEEEEeCC-chhHH---HHHHhCCEEEEecCCCCcCCHHHcCCCCEE
Confidence 4568899999864 4 3566677789999887543 33333 47899999998776 466677778999999
Q ss_pred EEEe
Q 013451 338 IQVI 341 (442)
Q Consensus 338 IEI~ 341 (442)
|-+=
T Consensus 227 IDvG 230 (284)
T PRK14190 227 IDVG 230 (284)
T ss_pred EEee
Confidence 9863
No 17
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=63.64 E-value=27 Score=31.14 Aligned_cols=93 Identities=15% Similarity=0.240 Sum_probs=55.2
Q ss_pred CccccCHHHHHHHHHHcCCEEEEEcCC-CCCCHHHH-------------HHHHhcCCEEEeechhhhhhhhccCCCcEEE
Q 013451 273 SRAITNENSLVKMAEDIGFQVQVVRPD-RTSELAKI-------------YRALNSSDVMVGVHGAAMTHFLFMKPGSVFI 338 (442)
Q Consensus 273 ~R~i~Ne~ev~~~l~~~Gf~v~v~~~~-~~~s~~eq-------------~~l~~~adVlVGvHGAgLtN~lFm~pgs~vI 338 (442)
.||+-=..+.++.|.+.|++|.+-... ....|.++ -+++..||||+++..-...-.-.|++|.++|
T Consensus 10 E~RVal~P~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~~~e~~~l~~g~~li 89 (136)
T PF05222_consen 10 ERRVALTPEDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPSEEELALLKPGQTLI 89 (136)
T ss_dssp ---BSS-HHHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS---GGGGGGS-TTCEEE
T ss_pred CcEecccHHHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCCHHHHhhcCCCcEEE
Confidence 355555567788888889999875432 12233321 2688999999999999999999999999998
Q ss_pred EEeeCCCCcccccchHhHHhhcCCcEEEEEe
Q 013451 339 QVIPLGTDWAAETYYGEPARKLGLKYIGYTI 369 (442)
Q Consensus 339 EI~P~g~~~~~~~~y~~~A~~~Gl~Y~~y~i 369 (442)
=++.+. ........+ ...|+..++|..
T Consensus 90 ~~~~~~---~~~~~~~~l-~~~~it~~a~E~ 116 (136)
T PF05222_consen 90 GFLHPA---QNKELLEAL-AKKGITAFALEL 116 (136)
T ss_dssp EE--GG---GHHHHHHHH-HHCTEEEEEGGG
T ss_pred Eeeccc---cCHHHHHHH-HHCCCEEEEhhh
Confidence 776443 122233333 336777766543
No 18
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=63.23 E-value=17 Score=38.31 Aligned_cols=98 Identities=16% Similarity=0.282 Sum_probs=67.1
Q ss_pred CCEEEEEEeCCC--cc-ccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hh--hhhhhccCCCc
Q 013451 262 KPKLVILSRNGS--RA-ITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AA--MTHFLFMKPGS 335 (442)
Q Consensus 262 ~prv~ii~R~~~--R~-i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-Ag--LtN~lFm~pgs 335 (442)
++.|-+|.-... +. --|..|+.+.|++.|++|+.+-+. +.+++| ++-+.+|.+-|.++. +| ++..|-=+=|.
T Consensus 161 ~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~-~~~~~e-i~~~~~A~lniv~~~~~g~~~a~~Lee~~Gi 238 (426)
T cd01972 161 EDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAG-GCSVEE-LERASEAAANVTLCLDLGYYLGAALEQRFGV 238 (426)
T ss_pred CCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCC-CCCHHH-HHhcccCCEEEEEChhHHHHHHHHHHHHhCC
Confidence 456667765432 11 367789999999999999887654 466666 566888888887774 44 44444334466
Q ss_pred EEEEE-eeCCCCcccccchHhHHhhcCC
Q 013451 336 VFIQV-IPLGTDWAAETYYGEPARKLGL 362 (442)
Q Consensus 336 ~vIEI-~P~g~~~~~~~~y~~~A~~~Gl 362 (442)
-.+++ +|+|++ ....++..+|+..|+
T Consensus 239 P~~~~~~P~G~~-~T~~~l~~ia~~~g~ 265 (426)
T cd01972 239 PEIKAPQPYGIE-ATDKWLREIAKVLGM 265 (426)
T ss_pred CeEecCCccCHH-HHHHHHHHHHHHhCC
Confidence 67766 689853 235588899998886
No 19
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=63.00 E-value=21 Score=32.35 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCEEEEEcCCC-CCCHHHHHHHHhc--CCEEEeechhhhhh
Q 013451 281 SLVKMAEDIGFQVQVVRPDR-TSELAKIYRALNS--SDVMVGVHGAAMTH 327 (442)
Q Consensus 281 ev~~~l~~~Gf~v~v~~~~~-~~s~~eq~~l~~~--adVlVGvHGAgLtN 327 (442)
.|.+.|++.|++|.....+. ..++.+.++..+. +|++|+.|-.+-.+
T Consensus 33 ~l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~na~~~ 82 (172)
T cd02696 33 KLAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHANAAPN 82 (172)
T ss_pred HHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEeecCCCC
Confidence 45556667799998877652 3689999999886 99999999877766
No 20
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.81 E-value=23 Score=35.77 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=51.3
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~v 337 (442)
..-++++|.|... | -+..+|.+.|..|.+.... + .+..+.+++|||+|+.-| +++-..=|.+||++|
T Consensus 156 ~Gk~vvVvGrs~~VG~------Pla~lL~~~gAtVtv~hs~-t---~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~GavV 225 (285)
T PRK14191 156 KGKDVVIIGASNIVGK------PLAMLMLNAGASVSVCHIL-T---KDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVV 225 (285)
T ss_pred CCCEEEEECCCchhHH------HHHHHHHHCCCEEEEEeCC-c---HHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcEE
Confidence 3558899999853 3 3566677789999887532 2 233467899999988776 456556677999999
Q ss_pred EEEe
Q 013451 338 IQVI 341 (442)
Q Consensus 338 IEI~ 341 (442)
|.+=
T Consensus 226 IDvG 229 (285)
T PRK14191 226 VDIG 229 (285)
T ss_pred EEee
Confidence 9874
No 21
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=60.12 E-value=30 Score=35.90 Aligned_cols=72 Identities=18% Similarity=0.297 Sum_probs=53.2
Q ss_pred CCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEEE
Q 013451 261 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQ 339 (442)
Q Consensus 261 ~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~vIE 339 (442)
..-++++|.|... +- .-+..+|.+.|..|.+.... +.++ -+..++|||+|..=| +++-..=|.+||++||-
T Consensus 213 ~GK~vvVIGRS~i---VG-kPla~LL~~~~ATVTicHs~-T~nl---~~~~~~ADIvIsAvGkp~~v~~d~vk~GavVID 284 (345)
T PLN02897 213 AGKNAVVIGRSNI---VG-LPMSLLLQRHDATVSTVHAF-TKDP---EQITRKADIVIAAAGIPNLVRGSWLKPGAVVID 284 (345)
T ss_pred CCCEEEEECCCcc---cc-HHHHHHHHHCCCEEEEEcCC-CCCH---HHHHhhCCEEEEccCCcCccCHHHcCCCCEEEE
Confidence 3458899999864 11 13566777788999887643 3444 456899999988766 67888889999999987
Q ss_pred E
Q 013451 340 V 340 (442)
Q Consensus 340 I 340 (442)
+
T Consensus 285 V 285 (345)
T PLN02897 285 V 285 (345)
T ss_pred c
Confidence 5
No 22
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.67 E-value=33 Score=34.63 Aligned_cols=70 Identities=20% Similarity=0.408 Sum_probs=52.7
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~v 337 (442)
..-++++|.|+.. | -+..+|.+.|..|.+.... +.++ -+..++|||+|+.=| +++-..=|.+||++|
T Consensus 156 ~Gk~vvVvGrS~iVGk------Pla~lL~~~~atVtichs~-T~~l---~~~~~~ADIvI~AvG~~~~i~~~~vk~GavV 225 (284)
T PRK14170 156 EGKRAVVIGRSNIVGK------PVAQLLLNENATVTIAHSR-TKDL---PQVAKEADILVVATGLAKFVKKDYIKPGAIV 225 (284)
T ss_pred CCCEEEEECCCCcchH------HHHHHHHHCCCEEEEeCCC-CCCH---HHHHhhCCEEEEecCCcCccCHHHcCCCCEE
Confidence 3458899999864 4 3566677788999887654 3344 346889999998877 677777889999999
Q ss_pred EEE
Q 013451 338 IQV 340 (442)
Q Consensus 338 IEI 340 (442)
|-+
T Consensus 226 IDv 228 (284)
T PRK14170 226 IDV 228 (284)
T ss_pred EEc
Confidence 875
No 23
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=59.36 E-value=26 Score=32.67 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCEEEEEcCCCC---------------CCHHHHHHHHh--cCCEEEeechhhhhh
Q 013451 281 SLVKMAEDIGFQVQVVRPDRT---------------SELAKIYRALN--SSDVMVGVHGAAMTH 327 (442)
Q Consensus 281 ev~~~l~~~Gf~v~v~~~~~~---------------~s~~eq~~l~~--~adVlVGvHGAgLtN 327 (442)
.|.+.|++.|++|.....+.. .++.+.+.+.+ .+|++|++|--+..+
T Consensus 34 ~l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~Na~~~ 97 (189)
T TIGR02883 34 KLKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHLNAFPS 97 (189)
T ss_pred HHHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEecCCCCC
Confidence 455667778999987776521 26788888887 489999999876543
No 24
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=59.34 E-value=17 Score=32.94 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCEEEEEcCCC-CCCHHHHHHHH--hcCCEEEeechhhhhh
Q 013451 281 SLVKMAEDIGFQVQVVRPDR-TSELAKIYRAL--NSSDVMVGVHGAAMTH 327 (442)
Q Consensus 281 ev~~~l~~~Gf~v~v~~~~~-~~s~~eq~~l~--~~adVlVGvHGAgLtN 327 (442)
.|.+.|++.|++|.....+. ..++.+.++.. ..+|++|+.|--+..+
T Consensus 32 ~l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~na~~~ 81 (175)
T PF01520_consen 32 RLKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISIHFNASNG 81 (175)
T ss_dssp HHHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEEE-SSS
T ss_pred HHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEeecCccC
Confidence 34555667899988877652 36899999998 7899999999765533
No 25
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.73 E-value=37 Score=34.27 Aligned_cols=70 Identities=23% Similarity=0.400 Sum_probs=52.6
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~v 337 (442)
..-++++|.|+.. | -+..+|.+.|..|.+.... +.++. +..++|||+|+.=| +++-..=|.+||++|
T Consensus 156 ~Gk~vvViGrS~iVGk------Pla~lL~~~~AtVtichs~-T~nl~---~~~~~ADIvI~AvGk~~~i~~~~ik~gaiV 225 (282)
T PRK14182 156 KGKRALVVGRSNIVGK------PMAMMLLERHATVTIAHSR-TADLA---GEVGRADILVAAIGKAELVKGAWVKEGAVV 225 (282)
T ss_pred CCCEEEEECCCCcchH------HHHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEecCCcCccCHHHcCCCCEE
Confidence 4458899999864 4 3566777788899887654 44454 46789999988777 567777789999999
Q ss_pred EEE
Q 013451 338 IQV 340 (442)
Q Consensus 338 IEI 340 (442)
|-+
T Consensus 226 IDv 228 (282)
T PRK14182 226 IDV 228 (282)
T ss_pred EEe
Confidence 875
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=58.06 E-value=46 Score=33.40 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=50.7
Q ss_pred HHHHHHHHcCCEEEEEcCCC------------CCCHHHHHHHHhcCCEEEeechhhhhh---hhccCCCcEEEEEeeCCC
Q 013451 281 SLVKMAEDIGFQVQVVRPDR------------TSELAKIYRALNSSDVMVGVHGAAMTH---FLFMKPGSVFIQVIPLGT 345 (442)
Q Consensus 281 ev~~~l~~~Gf~v~v~~~~~------------~~s~~eq~~l~~~adVlVGvHGAgLtN---~lFm~pgs~vIEI~P~g~ 345 (442)
.+++.|+..|++|.+.+... ..++.+.-+++.++|++|-.=..++.+ +-.|++++.+|.+.-.-
T Consensus 165 avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~P- 243 (287)
T TIGR02853 165 TIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKP- 243 (287)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCC-
Confidence 34555555666655544321 013344456778999999866666533 22479999999987321
Q ss_pred CcccccchHhHHhhcCCcEE
Q 013451 346 DWAAETYYGEPARKLGLKYI 365 (442)
Q Consensus 346 ~~~~~~~y~~~A~~~Gl~Y~ 365 (442)
..+.| ..|+..|++..
T Consensus 244 ---g~tdf-~~Ak~~G~~a~ 259 (287)
T TIGR02853 244 ---GGTDF-EYAKKRGIKAL 259 (287)
T ss_pred ---CCCCH-HHHHHCCCEEE
Confidence 23567 78999999875
No 27
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.58 E-value=39 Score=34.11 Aligned_cols=71 Identities=13% Similarity=0.209 Sum_probs=52.6
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~v 337 (442)
..-++++|.|+.. | -+..+|.+.|..|.+.... +.++ .+.+++|||+|..-| +++-..=|.+||++|
T Consensus 156 ~Gk~vvViGrS~~VG~------Pla~lL~~~~AtVti~hs~-T~~l---~~~~~~ADIvV~AvGkp~~i~~~~vk~gavv 225 (281)
T PRK14183 156 KGKDVCVVGASNIVGK------PMAALLLNANATVDICHIF-TKDL---KAHTKKADIVIVGVGKPNLITEDMVKEGAIV 225 (281)
T ss_pred CCCEEEEECCCCcchH------HHHHHHHHCCCEEEEeCCC-CcCH---HHHHhhCCEEEEecCcccccCHHHcCCCcEE
Confidence 3458899999864 3 3566677788898876532 3334 357899999988777 677778889999999
Q ss_pred EEEe
Q 013451 338 IQVI 341 (442)
Q Consensus 338 IEI~ 341 (442)
|.+=
T Consensus 226 IDvG 229 (281)
T PRK14183 226 IDIG 229 (281)
T ss_pred EEee
Confidence 9863
No 28
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.37 E-value=40 Score=34.06 Aligned_cols=69 Identities=25% Similarity=0.371 Sum_probs=52.3
Q ss_pred CCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEE
Q 013451 262 KPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFI 338 (442)
Q Consensus 262 ~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~vI 338 (442)
.-++++|.|+.. | -+..+|.+.|..|.+.... +.++. +..++|||+|..=| +++-..=|.+||++||
T Consensus 156 Gk~vvViGrS~iVGk------Pla~lL~~~~atVtichs~-T~~l~---~~~~~ADIvI~AvG~p~~i~~~~vk~GavVI 225 (282)
T PRK14169 156 GKRVVIVGRSNIVGR------PLAGLMVNHDATVTIAHSK-TRNLK---QLTKEADILVVAVGVPHFIGADAVKPGAVVI 225 (282)
T ss_pred CCEEEEECCCccchH------HHHHHHHHCCCEEEEECCC-CCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCcEEE
Confidence 458899999864 4 3566777789999887543 44444 46889999888776 6777788999999998
Q ss_pred EE
Q 013451 339 QV 340 (442)
Q Consensus 339 EI 340 (442)
-+
T Consensus 226 Dv 227 (282)
T PRK14169 226 DV 227 (282)
T ss_pred Ee
Confidence 76
No 29
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.93 E-value=40 Score=34.14 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=51.3
Q ss_pred CCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEEEE
Q 013451 262 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 340 (442)
Q Consensus 262 ~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~vIEI 340 (442)
.-++++|.|+.. =-.-+..+|.+.|..|.+.... +.++. +..++|||+|..=| +++-..=|.+||++||-+
T Consensus 159 GK~vvViGrS~i----VGkPla~lL~~~~ATVtichs~-T~~L~---~~~~~ADIvV~AvGkp~~i~~~~vk~GavVIDv 230 (288)
T PRK14171 159 GKNVVIIGRSNI----VGKPLSALLLKENCSVTICHSK-THNLS---SITSKADIVVAAIGSPLKLTAEYFNPESIVIDV 230 (288)
T ss_pred CCEEEEECCCCc----chHHHHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEccCCCCccCHHHcCCCCEEEEe
Confidence 347899998864 1114666777788999887643 44444 46788999998777 566677788999999875
No 30
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.80 E-value=41 Score=33.96 Aligned_cols=72 Identities=15% Similarity=0.338 Sum_probs=52.8
Q ss_pred CCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEEE
Q 013451 261 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQ 339 (442)
Q Consensus 261 ~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~vIE 339 (442)
..-++++|.|+.. =-.-+..+|.+.|..|.+.... +.++. +..++|||+|+.=| +++-..=|.+||++||-
T Consensus 158 ~Gk~vvViGrS~i----VGkPla~lL~~~~atVt~chs~-T~~l~---~~~~~ADIvIsAvGk~~~i~~~~ik~gavVID 229 (284)
T PRK14177 158 TGKNAVVVGRSPI----LGKPMAMLLTEMNATVTLCHSK-TQNLP---SIVRQADIIVGAVGKPEFIKADWISEGAVLLD 229 (284)
T ss_pred CCCEEEEECCCCc----chHHHHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEeCCCcCccCHHHcCCCCEEEE
Confidence 3458899998864 1114666777889999987654 44444 45799999998776 56777778999999987
Q ss_pred E
Q 013451 340 V 340 (442)
Q Consensus 340 I 340 (442)
+
T Consensus 230 v 230 (284)
T PRK14177 230 A 230 (284)
T ss_pred e
Confidence 6
No 31
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=56.75 E-value=46 Score=33.48 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=56.7
Q ss_pred CEEEEEEeCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCC------------CCHHHHHHHHhcCCEEEeechhhh-hhh
Q 013451 263 PKLVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPDRT------------SELAKIYRALNSSDVMVGVHGAAM-THF 328 (442)
Q Consensus 263 prv~ii~R~~~-R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~------------~s~~eq~~l~~~adVlVGvHGAgL-tN~ 328 (442)
-++++|.-.+- + .++..|+..|.+|.+.+.... ..+.+-.+.+.++|++|..=++.+ +..
T Consensus 153 ~kvlViG~G~iG~------~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~ 226 (296)
T PRK08306 153 SNVLVLGFGRTGM------TLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKE 226 (296)
T ss_pred CEEEEECCcHHHH------HHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHH
Confidence 36667765321 2 356667777777776654310 122334466789999997655553 333
Q ss_pred h--ccCCCcEEEEEeeCCCCcccccchHhHHhhcCCcEEEE
Q 013451 329 L--FMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKYIGY 367 (442)
Q Consensus 329 l--Fm~pgs~vIEI~P~g~~~~~~~~y~~~A~~~Gl~Y~~y 367 (442)
+ .|+||++||.+.-.. ....| ..|+..|++...+
T Consensus 227 ~l~~~~~g~vIIDla~~p----ggtd~-~~a~~~Gv~~~~~ 262 (296)
T PRK08306 227 VLSKMPPEALIIDLASKP----GGTDF-EYAEKRGIKALLA 262 (296)
T ss_pred HHHcCCCCcEEEEEccCC----CCcCe-eehhhCCeEEEEE
Confidence 3 389999999987321 12334 4677888887643
No 32
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=56.62 E-value=57 Score=32.82 Aligned_cols=82 Identities=18% Similarity=0.224 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCEEEEEcCCCC-C-----CHH-HHHHHHhcCCEEEee----------chh--------hhhhhhccCCC
Q 013451 280 NSLVKMAEDIGFQVQVVRPDRT-S-----ELA-KIYRALNSSDVMVGV----------HGA--------AMTHFLFMKPG 334 (442)
Q Consensus 280 ~ev~~~l~~~Gf~v~v~~~~~~-~-----s~~-eq~~l~~~adVlVGv----------HGA--------gLtN~lFm~pg 334 (442)
-++++.|.+.|++|.+..+... . .+. ..-+.+.+||++|.+ ++. .-..+=-||+|
T Consensus 15 ~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~ 94 (296)
T PRK08306 15 LELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEH 94 (296)
T ss_pred HHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCC
Confidence 4788999999999998665411 1 121 223578999999988 433 22345578999
Q ss_pred cEEEEEeeCCCCcccccchHhHHhhcCCcEEEEE
Q 013451 335 SVFIQVIPLGTDWAAETYYGEPARKLGLKYIGYT 368 (442)
Q Consensus 335 s~vIEI~P~g~~~~~~~~y~~~A~~~Gl~Y~~y~ 368 (442)
..++ . |+ ........+...|+..+.|-
T Consensus 95 ~~v~--~--G~---~~~~~~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 95 CTIF--S--GI---ANPYLKELAKETNRKLVELF 121 (296)
T ss_pred CEEE--E--ec---CCHHHHHHHHHCCCeEEEEe
Confidence 7554 2 31 12234567788999887654
No 33
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.50 E-value=40 Score=34.09 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=51.8
Q ss_pred CCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEEE
Q 013451 261 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQ 339 (442)
Q Consensus 261 ~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~vIE 339 (442)
..-++++|.|... + -.-+..+|.+.|..|.+.... +-++ -+..++|||+|..=| +++-..=|.+||++||.
T Consensus 163 ~Gk~vvViGrs~i---V-GkPla~lL~~~~atVtv~hs~-T~~l---~~~~~~ADIvv~AvG~p~~i~~~~vk~gavVID 234 (287)
T PRK14176 163 EGKNAVIVGHSNV---V-GKPMAAMLLNRNATVSVCHVF-TDDL---KKYTLDADILVVATGVKHLIKADMVKEGAVIFD 234 (287)
T ss_pred CCCEEEEECCCcc---c-HHHHHHHHHHCCCEEEEEecc-CCCH---HHHHhhCCEEEEccCCccccCHHHcCCCcEEEE
Confidence 4458899998763 1 114667778889999887643 3334 446799999996444 56666778999999998
Q ss_pred Ee
Q 013451 340 VI 341 (442)
Q Consensus 340 I~ 341 (442)
+=
T Consensus 235 vG 236 (287)
T PRK14176 235 VG 236 (287)
T ss_pred ec
Confidence 63
No 34
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=56.27 E-value=38 Score=35.43 Aligned_cols=72 Identities=21% Similarity=0.348 Sum_probs=52.9
Q ss_pred CCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEEE
Q 013451 261 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQ 339 (442)
Q Consensus 261 ~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~vIE 339 (442)
..-++++|.|... +- .-+..+|.+.|..|.+.... +.++. +..++|||+|+.=| +++-..=|.+||++||-
T Consensus 230 ~GK~vvVIGRS~i---VG-kPLa~LL~~~~ATVTicHs~-T~nl~---~~~r~ADIVIsAvGkp~~i~~d~vK~GAvVID 301 (364)
T PLN02616 230 KGKRAVVIGRSNI---VG-MPAALLLQREDATVSIVHSR-TKNPE---EITREADIIISAVGQPNMVRGSWIKPGAVVID 301 (364)
T ss_pred CCCEEEEECCCcc---cc-HHHHHHHHHCCCeEEEeCCC-CCCHH---HHHhhCCEEEEcCCCcCcCCHHHcCCCCEEEe
Confidence 3458899999864 11 14666777788999887654 44444 45799999988776 67778889999999987
Q ss_pred E
Q 013451 340 V 340 (442)
Q Consensus 340 I 340 (442)
+
T Consensus 302 V 302 (364)
T PLN02616 302 V 302 (364)
T ss_pred c
Confidence 5
No 35
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.67 E-value=42 Score=34.11 Aligned_cols=69 Identities=25% Similarity=0.376 Sum_probs=51.1
Q ss_pred CCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEE
Q 013451 262 KPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFI 338 (442)
Q Consensus 262 ~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~vI 338 (442)
.-++++|.|+.. | -+..+|.+.|..|.+.... +.++. +..++|||+|..=| +++-..=|.+||++||
T Consensus 158 Gk~vvVIGrS~iVGk------Pla~lL~~~~atVtv~hs~-T~~l~---~~~~~ADIvIsAvGkp~~i~~~~ik~gavVI 227 (297)
T PRK14186 158 GKKAVVVGRSILVGK------PLALMLLAANATVTIAHSR-TQDLA---SITREADILVAAAGRPNLIGAEMVKPGAVVV 227 (297)
T ss_pred CCEEEEECCCccchH------HHHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 457899999864 4 3566777789999887654 34444 46788999998777 4566666899999998
Q ss_pred EE
Q 013451 339 QV 340 (442)
Q Consensus 339 EI 340 (442)
-+
T Consensus 228 Dv 229 (297)
T PRK14186 228 DV 229 (297)
T ss_pred Ee
Confidence 75
No 36
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.53 E-value=43 Score=33.69 Aligned_cols=70 Identities=17% Similarity=0.353 Sum_probs=52.1
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~v 337 (442)
..-++++|.|+.. | -+..+|.+.|..|.+.... +.++. +..++|||+|+.=| +++-..=|.+||++|
T Consensus 157 ~Gk~vvViGrS~~VGk------Pla~lL~~~~AtVt~chs~-T~~l~---~~~~~ADIvIsAvGkp~~i~~~~ik~gavV 226 (278)
T PRK14172 157 EGKEVVVIGRSNIVGK------PVAQLLLNENATVTICHSK-TKNLK---EVCKKADILVVAIGRPKFIDEEYVKEGAIV 226 (278)
T ss_pred CCCEEEEECCCccchH------HHHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEcCCCcCccCHHHcCCCcEE
Confidence 3458899999864 4 3566777789999887643 34444 45788999988777 567777788999999
Q ss_pred EEE
Q 013451 338 IQV 340 (442)
Q Consensus 338 IEI 340 (442)
|-+
T Consensus 227 IDv 229 (278)
T PRK14172 227 IDV 229 (278)
T ss_pred EEe
Confidence 986
No 37
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=55.48 E-value=33 Score=36.18 Aligned_cols=95 Identities=20% Similarity=0.296 Sum_probs=64.6
Q ss_pred CCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH-hcCCEEEeechhhhhhhhccCCCcEEEEE
Q 013451 262 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRAL-NSSDVMVGVHGAAMTHFLFMKPGSVFIQV 340 (442)
Q Consensus 262 ~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~-~~adVlVGvHGAgLtN~lFm~pgs~vIEI 340 (442)
++++.++..- --.+.+|+.+.|++.|.+++++-++ .+++|..++- +.+.+.++..+...+..|= ..|.-.+..
T Consensus 159 ~~~vniiG~~---~~~d~~ei~~lL~~~Gl~~~~~l~~--~~~~el~~~~~A~~~i~~~~~~~~~a~~Le-~~GvP~~~~ 232 (416)
T cd01980 159 EPSLALLGEM---FPADPVAIGSVLERMGLAAVPVVPT--REWRELYAAGDAAAVAALHPFYTATIRELE-EAGRPIVSG 232 (416)
T ss_pred CCeEEEEccC---CCCCHHHHHHHHHHcCCceeeEeCC--CCHHHHhhcccCcEEEEeChhHHHHHHHHH-HcCCceecC
Confidence 4578888532 1336679999999999999864443 5776654444 2344555566666666564 447767777
Q ss_pred eeCCCCcccccchHhHHhhcCCc
Q 013451 341 IPLGTDWAAETYYGEPARKLGLK 363 (442)
Q Consensus 341 ~P~g~~~~~~~~y~~~A~~~Gl~ 363 (442)
.|.|++ ....++..+|+..|..
T Consensus 233 ~piG~~-~td~~l~~la~~~g~~ 254 (416)
T cd01980 233 APVGAD-GTAAWLEAVGEALGLD 254 (416)
T ss_pred CCcCch-HHHHHHHHHHHHhCcC
Confidence 899965 3467999999999964
No 38
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=55.17 E-value=21 Score=37.02 Aligned_cols=98 Identities=16% Similarity=0.266 Sum_probs=71.2
Q ss_pred CCCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhhh-hhhccCC--CcE
Q 013451 260 SKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMT-HFLFMKP--GSV 336 (442)
Q Consensus 260 ~~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgLt-N~lFm~p--gs~ 336 (442)
..++.|-||....-- .-|..|+.+.|++.|++|..+-+. ..+++| ++-+.+|++-|.++..+.. =+=+|.. |.-
T Consensus 142 ~~~~~VNiiG~~~~~-~~d~~el~~lL~~~Gi~v~~~~~~-~~t~~e-~~~~~~A~lniv~~~~~~~~~a~~L~e~~giP 218 (398)
T PF00148_consen 142 KKPRSVNIIGGSPLG-PGDLEELKRLLEELGIEVNAVFPG-GTTLEE-IRKAPEAALNIVLCPEGGPYAAEWLEERFGIP 218 (398)
T ss_dssp TSSSEEEEEEESTBT-HHHHHHHHHHHHHTTEEEEEEEET-TBCHHH-HHHGGGSSEEEESSCCHHHHHHHHHHHHHT-E
T ss_pred CCCCceEEecCcCCC-cccHHHHHHHHHHCCCceEEEeCC-CCCHHH-HHhCCcCcEEEEeccchhhHHHHHHHHHhCCC
Confidence 344577788765321 268889999999999998887655 456655 6788999999999888665 4555555 777
Q ss_pred EEE-EeeCCCCcccccchHhHHhhcC
Q 013451 337 FIQ-VIPLGTDWAAETYYGEPARKLG 361 (442)
Q Consensus 337 vIE-I~P~g~~~~~~~~y~~~A~~~G 361 (442)
.+. ..|+|++. ...+|..+|+.+|
T Consensus 219 ~~~~~~p~G~~~-t~~~l~~i~~~lg 243 (398)
T PF00148_consen 219 YLYFPSPYGIEG-TDAWLRAIAEALG 243 (398)
T ss_dssp EEEEC-SBSHHH-HHHHHHHHHHHHT
T ss_pred eeeccccccHHH-HHHHHHHHHHHhC
Confidence 777 67888543 3669999999999
No 39
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.12 E-value=43 Score=33.77 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=52.2
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~v 337 (442)
..-++++|.|+.. | -+..+|.+.|..|.+.... +.++ -+..++|||+|+.-| +++-..=|.+||++|
T Consensus 156 ~Gk~vvVvGrS~iVGk------Pla~lL~~~~atVt~chs~-T~nl---~~~~~~ADIvIsAvGkp~~i~~~~vk~GavV 225 (282)
T PRK14166 156 EGKDAVIIGASNIVGR------PMATMLLNAGATVSVCHIK-TKDL---SLYTRQADLIIVAAGCVNLLRSDMVKEGVIV 225 (282)
T ss_pred CCCEEEEECCCCcchH------HHHHHHHHCCCEEEEeCCC-CCCH---HHHHhhCCEEEEcCCCcCccCHHHcCCCCEE
Confidence 3458899999864 4 3566677789999887643 3333 346899999988777 577777789999999
Q ss_pred EEE
Q 013451 338 IQV 340 (442)
Q Consensus 338 IEI 340 (442)
|-+
T Consensus 226 IDv 228 (282)
T PRK14166 226 VDV 228 (282)
T ss_pred EEe
Confidence 875
No 40
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=54.89 E-value=32 Score=32.93 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=51.8
Q ss_pred CCCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCC-------------CCC---CHHH-HHHHHhcCCEEEeech
Q 013451 260 SKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPD-------------RTS---ELAK-IYRALNSSDVMVGVHG 322 (442)
Q Consensus 260 ~~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~-------------~~~---s~~e-q~~l~~~adVlVGvHG 322 (442)
-..-++++|.|... +. .-+..+|.+.|..|.+.+-+ ... +... -.+.+++|||+|..=|
T Consensus 60 l~GK~vvVIGrS~i---VG-kPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG 135 (197)
T cd01079 60 LYGKTITIINRSEV---VG-RPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVP 135 (197)
T ss_pred CCCCEEEEECCCcc---ch-HHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccC
Confidence 34558899999864 11 14666777889999888310 011 2222 3357899999998777
Q ss_pred h-hh-hhhhccCCCcEEEEE
Q 013451 323 A-AM-THFLFMKPGSVFIQV 340 (442)
Q Consensus 323 A-gL-tN~lFm~pgs~vIEI 340 (442)
- ++ -..=|.+||++||-+
T Consensus 136 ~~~~~i~~d~ik~GavVIDV 155 (197)
T cd01079 136 SPNYKVPTELLKDGAICINF 155 (197)
T ss_pred CCCCccCHHHcCCCcEEEEc
Confidence 4 44 577789999999875
No 41
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.87 E-value=43 Score=33.78 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=52.3
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~v 337 (442)
..-++++|.|+.. | -+..+|.+.|..|.+.... +.++. +..++|||+|+.=| +++-..=|.+||++|
T Consensus 157 ~Gk~vvViGrS~~VGk------Pla~lL~~~~ATVt~chs~-T~dl~---~~~k~ADIvIsAvGkp~~i~~~~vk~gavV 226 (282)
T PRK14180 157 EGAYAVVVGASNVVGK------PVSQLLLNAKATVTTCHRF-TTDLK---SHTTKADILIVAVGKPNFITADMVKEGAVV 226 (282)
T ss_pred CCCEEEEECCCCcchH------HHHHHHHHCCCEEEEEcCC-CCCHH---HHhhhcCEEEEccCCcCcCCHHHcCCCcEE
Confidence 3458899999864 4 3566677788999887643 33444 45899999998777 577777788999999
Q ss_pred EEE
Q 013451 338 IQV 340 (442)
Q Consensus 338 IEI 340 (442)
|-+
T Consensus 227 IDv 229 (282)
T PRK14180 227 IDV 229 (282)
T ss_pred EEe
Confidence 876
No 42
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=54.26 E-value=35 Score=34.48 Aligned_cols=71 Identities=21% Similarity=0.337 Sum_probs=55.7
Q ss_pred CCCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcE
Q 013451 260 SKKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSV 336 (442)
Q Consensus 260 ~~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~ 336 (442)
-..-++++|.|+.- | =+..+|...++.|.+.... + ++-.+..++|||+|..-| +++-..=|..||++
T Consensus 154 l~Gk~~vVVGrS~iVGk------Pla~lL~~~naTVtvcHs~-T---~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gav 223 (283)
T COG0190 154 LRGKNVVVVGRSNIVGK------PLALLLLNANATVTVCHSR-T---KDLASITKNADIVVVAVGKPHFIKADMVKPGAV 223 (283)
T ss_pred CCCCEEEEECCCCcCcH------HHHHHHHhCCCEEEEEcCC-C---CCHHHHhhhCCEEEEecCCccccccccccCCCE
Confidence 34568899999864 5 3667777899999987643 2 455678899999998888 67888889999999
Q ss_pred EEEE
Q 013451 337 FIQV 340 (442)
Q Consensus 337 vIEI 340 (442)
||-+
T Consensus 224 VIDV 227 (283)
T COG0190 224 VIDV 227 (283)
T ss_pred EEec
Confidence 9876
No 43
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=53.96 E-value=32 Score=34.75 Aligned_cols=56 Identities=16% Similarity=0.286 Sum_probs=39.2
Q ss_pred HHHHHHcCCEEEEEcCCC-CCCHHHHHHHHh--cCCEEEeechhhhhhhhccCCCcEEEEEeeC
Q 013451 283 VKMAEDIGFQVQVVRPDR-TSELAKIYRALN--SSDVMVGVHGAAMTHFLFMKPGSVFIQVIPL 343 (442)
Q Consensus 283 ~~~l~~~Gf~v~v~~~~~-~~s~~eq~~l~~--~adVlVGvHGAgLtN~lFm~pgs~vIEI~P~ 343 (442)
.+.|++.|++|+....+. ..++.+-+++.+ .||++|++|--+.++ |.+.=+|++-+
T Consensus 92 ~~~L~~~G~~V~lTR~~D~~vsL~~R~~~An~~~ADlFISIH~Ns~~~-----~~a~G~evy~~ 150 (287)
T PRK10319 92 RSILRNHGIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTN-----PKAAGASVFAL 150 (287)
T ss_pred HHHHHHCCCEEEEeCCCCCCCCHHHHHHHHHhcCCCEEEEecCCCCCC-----CCCcEEEEEEe
Confidence 444555699998877652 368999888888 799999999654332 34455566643
No 44
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.67 E-value=50 Score=33.41 Aligned_cols=73 Identities=19% Similarity=0.203 Sum_probs=52.3
Q ss_pred CCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEEE
Q 013451 261 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQ 339 (442)
Q Consensus 261 ~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~vIE 339 (442)
..-++++|.|... =-.-+..+|.+.|..|.+.... +-++ -+.+++|||+|..=| +++-..=|.+||++||.
T Consensus 158 ~Gk~vvViGrs~i----VG~Pla~lL~~~~atVtv~hs~-T~~l---~~~~~~ADIvi~avG~p~~v~~~~vk~gavVID 229 (285)
T PRK10792 158 YGLNAVVVGASNI----VGRPMSLELLLAGCTVTVCHRF-TKNL---RHHVRNADLLVVAVGKPGFIPGEWIKPGAIVID 229 (285)
T ss_pred CCCEEEEECCCcc----cHHHHHHHHHHCCCeEEEEECC-CCCH---HHHHhhCCEEEEcCCCcccccHHHcCCCcEEEE
Confidence 3458899998763 1114666777889999887643 3233 346889999998876 56666677899999998
Q ss_pred Ee
Q 013451 340 VI 341 (442)
Q Consensus 340 I~ 341 (442)
+=
T Consensus 230 vG 231 (285)
T PRK10792 230 VG 231 (285)
T ss_pred cc
Confidence 64
No 45
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.08 E-value=52 Score=33.32 Aligned_cols=70 Identities=20% Similarity=0.348 Sum_probs=51.4
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~v 337 (442)
..-++++|.|+.. | =+..+|.+.|..|.+.... +.++. ...++|||+|..=| +++-..=|.+||++|
T Consensus 154 ~Gk~vvViGrS~iVGk------Pla~lL~~~~aTVtichs~-T~~l~---~~~~~ADIvIsAvGkp~~i~~~~vk~GavV 223 (287)
T PRK14173 154 AGKEVVVVGRSNIVGK------PLAALLLREDATVTLAHSK-TQDLP---AVTRRADVLVVAVGRPHLITPEMVRPGAVV 223 (287)
T ss_pred CCCEEEEECCCCccHH------HHHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEecCCcCccCHHHcCCCCEE
Confidence 3458899999864 4 3566677788899887643 44444 56788999988777 566666678999999
Q ss_pred EEE
Q 013451 338 IQV 340 (442)
Q Consensus 338 IEI 340 (442)
|-+
T Consensus 224 IDV 226 (287)
T PRK14173 224 VDV 226 (287)
T ss_pred EEc
Confidence 875
No 46
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=51.59 E-value=54 Score=33.41 Aligned_cols=70 Identities=24% Similarity=0.358 Sum_probs=51.4
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~v 337 (442)
..-++++|.|... | -+..+|.+.|..|.+.... +.++. +..++|||+|..=| +++-..=|.+||++|
T Consensus 166 ~Gk~vvVIGRS~iVGk------Pla~lL~~~~ATVtvchs~-T~nl~---~~~~~ADIvv~AvGk~~~i~~~~vk~gavV 235 (299)
T PLN02516 166 KGKKAVVVGRSNIVGL------PVSLLLLKADATVTVVHSR-TPDPE---SIVREADIVIAAAGQAMMIKGDWIKPGAAV 235 (299)
T ss_pred CCCEEEEECCCccchH------HHHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEcCCCcCccCHHHcCCCCEE
Confidence 3458899999864 4 3566677789999988654 44444 46789999988766 456666688999999
Q ss_pred EEE
Q 013451 338 IQV 340 (442)
Q Consensus 338 IEI 340 (442)
|-+
T Consensus 236 IDv 238 (299)
T PLN02516 236 IDV 238 (299)
T ss_pred EEe
Confidence 876
No 47
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=51.20 E-value=40 Score=36.71 Aligned_cols=101 Identities=19% Similarity=0.324 Sum_probs=72.1
Q ss_pred CCCCEEEEEEeC--CCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCC--C
Q 013451 260 SKKPKLVILSRN--GSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKP--G 334 (442)
Q Consensus 260 ~~~prv~ii~R~--~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~p--g 334 (442)
..+++|-||.=. +.+.--|..|+.+.|++.|.+|.++-+. +.++ ++++-+.+|++-|.+++ .|..=.-+|.. |
T Consensus 156 ~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~-g~s~-~di~~l~~A~~nivl~~~~g~~~A~~Lee~fG 233 (519)
T PRK02910 156 TARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPL-GASP-ADLKRLPAAWFNVVLYREIGESAARYLEREFG 233 (519)
T ss_pred CCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCC-CCCH-HHHHhcccCcEEEEeCHHHHHHHHHHHHHHhC
Confidence 346777777643 2344567789999999999999887665 4554 55777899999998887 56655566553 4
Q ss_pred cEEEEEeeCCCCcccccchHhHHhhcCCc
Q 013451 335 SVFIQVIPLGTDWAAETYYGEPARKLGLK 363 (442)
Q Consensus 335 s~vIEI~P~g~~~~~~~~y~~~A~~~Gl~ 363 (442)
.-.+...|.|++ ....+-..+|+.+|+.
T Consensus 234 iP~i~~~PiG~~-~T~~fL~~la~~~g~~ 261 (519)
T PRK02910 234 QPYVKTVPIGVG-ATARFIREVAELLNLD 261 (519)
T ss_pred CcccccccccHH-HHHHHHHHHHHHhCCC
Confidence 445667899953 2356788999999874
No 48
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.11 E-value=56 Score=33.18 Aligned_cols=70 Identities=20% Similarity=0.387 Sum_probs=52.4
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~v 337 (442)
..-++++|.|+.. | -+..+|.+.|..|.+.... +.++. +..++|||+|..=| +++-..=|.+||++|
T Consensus 159 ~Gk~vvViGrS~iVGk------Pla~lL~~~~aTVt~chs~-T~~l~---~~~~~ADIvVsAvGkp~~i~~~~ik~gaiV 228 (294)
T PRK14187 159 SGSDAVVIGRSNIVGK------PMACLLLGENCTVTTVHSA-TRDLA---DYCSKADILVAAVGIPNFVKYSWIKKGAIV 228 (294)
T ss_pred CCCEEEEECCCccchH------HHHHHHhhCCCEEEEeCCC-CCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCCEE
Confidence 3458899999864 4 3566777789999887653 34444 46899999998877 566677788999999
Q ss_pred EEE
Q 013451 338 IQV 340 (442)
Q Consensus 338 IEI 340 (442)
|-+
T Consensus 229 IDV 231 (294)
T PRK14187 229 IDV 231 (294)
T ss_pred EEe
Confidence 876
No 49
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=50.01 E-value=64 Score=34.00 Aligned_cols=100 Identities=17% Similarity=0.294 Sum_probs=70.6
Q ss_pred CCCEEEEEEeCC--CccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeec---hhhhhhhhccCCCc
Q 013451 261 KKPKLVILSRNG--SRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVH---GAAMTHFLFMKPGS 335 (442)
Q Consensus 261 ~~prv~ii~R~~--~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvH---GAgLtN~lFm~pgs 335 (442)
.++++-||.-.. ...--|..|+.+.|++.|.+|..+-+. +.+++| ++-+.+|++-|.++ |..++..|--+=|.
T Consensus 161 ~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~-~~~~~~-i~~~~~A~lniv~~~~~~~~~a~~L~~~~Gi 238 (430)
T cd01981 161 EKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPE-GASVDD-LNELPKAWFNIVPYREYGLSAALYLEEEFGM 238 (430)
T ss_pred CCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcC-CCCHHH-HHhhhhCeEEEEecHHHHHHHHHHHHHHhCC
Confidence 345666775432 244578889999999999999886654 456655 56677777766654 45566666656676
Q ss_pred EEEEEeeCCCCcccccchHhHHhhcCCc
Q 013451 336 VFIQVIPLGTDWAAETYYGEPARKLGLK 363 (442)
Q Consensus 336 ~vIEI~P~g~~~~~~~~y~~~A~~~Gl~ 363 (442)
-.+...|+|++- ...+.+.+++.+|+.
T Consensus 239 P~~~~~p~G~~~-t~~~l~~i~~~~g~~ 265 (430)
T cd01981 239 PSVKITPIGVVA-TARFLREIQELLGIQ 265 (430)
T ss_pred CeEeccCCChHH-HHHHHHHHHHHhCCc
Confidence 667779999542 356899999999976
No 50
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.88 E-value=63 Score=32.74 Aligned_cols=70 Identities=14% Similarity=0.316 Sum_probs=50.6
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHc----CCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCC
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDI----GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKP 333 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~----Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~p 333 (442)
..-++++|.|... | -+..+|.+. +..|.+.... +.++.+ ..++|||+|+.=| +++-..=|.+|
T Consensus 152 ~Gk~vvViGrS~iVGk------Pla~lL~~~~~~~~AtVtvchs~-T~~l~~---~~~~ADIvV~AvG~p~~i~~~~ik~ 221 (287)
T PRK14181 152 HGRHVAIVGRSNIVGK------PLAALLMQKHPDTNATVTLLHSQ-SENLTE---ILKTADIIIAAIGVPLFIKEEMIAE 221 (287)
T ss_pred CCCEEEEECCCccchH------HHHHHHHhCcCCCCCEEEEeCCC-CCCHHH---HHhhCCEEEEccCCcCccCHHHcCC
Confidence 3458899999864 4 355566665 7788877543 344443 5789999998776 56777778999
Q ss_pred CcEEEEE
Q 013451 334 GSVFIQV 340 (442)
Q Consensus 334 gs~vIEI 340 (442)
|++||-+
T Consensus 222 GavVIDv 228 (287)
T PRK14181 222 KAVIVDV 228 (287)
T ss_pred CCEEEEe
Confidence 9999875
No 51
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=47.50 E-value=45 Score=28.88 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhccC-CCcEEEEEeeCCCCcccccchHhHHh
Q 013451 280 NSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMK-PGSVFIQVIPLGTDWAAETYYGEPAR 358 (442)
Q Consensus 280 ~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgLtN~lFm~-pgs~vIEI~P~g~~~~~~~~y~~~A~ 358 (442)
++.++.|++ |++|.+.+ ..+-.+-.+.+..+|++|+-.+..++--++-. |+-.+|...--|++... -..|+
T Consensus 9 ~~~~~~l~~-~~~v~~~~---~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id----~~~a~ 80 (133)
T PF00389_consen 9 DEEIERLEE-GFEVEFCD---SPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNID----LEAAK 80 (133)
T ss_dssp HHHHHHHHH-TSEEEEES---SSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-----HHHHH
T ss_pred HHHHHHHHC-CceEEEeC---CCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCccc----HHHHh
Confidence 566788888 88888776 46888889999999999998777676555544 88889888877754321 24467
Q ss_pred hcCCcE
Q 013451 359 KLGLKY 364 (442)
Q Consensus 359 ~~Gl~Y 364 (442)
..|+..
T Consensus 81 ~~gI~V 86 (133)
T PF00389_consen 81 ERGIPV 86 (133)
T ss_dssp HTTSEE
T ss_pred hCeEEE
Confidence 788765
No 52
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.09 E-value=69 Score=32.60 Aligned_cols=70 Identities=21% Similarity=0.438 Sum_probs=50.4
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHc----CCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCC
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDI----GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKP 333 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~----Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~p 333 (442)
..-++++|.|+.. | -+..+|.+. +..|.+.... +.++. +..++|||+|+.-| +++-..=|.+|
T Consensus 160 ~Gk~vvViGrS~iVGk------Pla~lL~~~~~~~~atVtv~hs~-T~~l~---~~~~~ADIvVsAvGkp~~i~~~~ik~ 229 (297)
T PRK14168 160 SGAEVVVVGRSNIVGK------PIANMMTQKGPGANATVTIVHTR-SKNLA---RHCQRADILIVAAGVPNLVKPEWIKP 229 (297)
T ss_pred CCCEEEEECCCCcccH------HHHHHHHhcccCCCCEEEEecCC-CcCHH---HHHhhCCEEEEecCCcCccCHHHcCC
Confidence 4568899999864 4 345555555 6788876543 33444 46799999998665 67888889999
Q ss_pred CcEEEEE
Q 013451 334 GSVFIQV 340 (442)
Q Consensus 334 gs~vIEI 340 (442)
|++||-+
T Consensus 230 gavVIDv 236 (297)
T PRK14168 230 GATVIDV 236 (297)
T ss_pred CCEEEec
Confidence 9999876
No 53
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.53 E-value=72 Score=32.42 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=46.9
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHH----cCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCC
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAED----IGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKP 333 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~----~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAg-LtN~lFm~p 333 (442)
..-++++|.|... |-+ ..+|.+ .|..|.+.... +.++ .+.+++|||+|+.=|.. +-..=|.+|
T Consensus 158 ~Gk~vvViGrS~iVG~Pl------a~lL~~~~~~~~atVt~~hs~-t~~l---~~~~~~ADIvI~Avg~~~li~~~~vk~ 227 (295)
T PRK14174 158 KGKHCVVVGRSNIVGKPM------ANLMLQKLKESNCTVTICHSA-TKDI---PSYTRQADILIAAIGKARFITADMVKP 227 (295)
T ss_pred CCCEEEEECCCCcchHHH------HHHHHhccccCCCEEEEEeCC-chhH---HHHHHhCCEEEEecCccCccCHHHcCC
Confidence 3458899999864 533 333333 68888887654 3333 45679999999988754 333335689
Q ss_pred CcEEEEE
Q 013451 334 GSVFIQV 340 (442)
Q Consensus 334 gs~vIEI 340 (442)
|++||-+
T Consensus 228 GavVIDV 234 (295)
T PRK14174 228 GAVVIDV 234 (295)
T ss_pred CCEEEEe
Confidence 9999876
No 54
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.72 E-value=73 Score=32.41 Aligned_cols=70 Identities=17% Similarity=0.319 Sum_probs=50.2
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHc----CCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCC
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDI----GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKP 333 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~----Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~p 333 (442)
..-++++|.|+.. | -+..+|.+. +..|.+.... +-++ -+..++|||+|+.=| +++-..=|.+|
T Consensus 156 ~Gk~vvViGrS~iVGk------Pla~lL~~~~~~~~aTVtvchs~-T~~l---~~~~~~ADIvIsAvGkp~~i~~~~ik~ 225 (297)
T PRK14167 156 EGADVVVVGRSDIVGK------PMANLLIQKADGGNATVTVCHSR-TDDL---AAKTRRADIVVAAAGVPELIDGSMLSE 225 (297)
T ss_pred CCCEEEEECCCcccHH------HHHHHHhcCccCCCCEEEEeCCC-CCCH---HHHHhhCCEEEEccCCcCccCHHHcCC
Confidence 3458899999864 4 244555554 6788876433 3344 356889999998766 67888888999
Q ss_pred CcEEEEE
Q 013451 334 GSVFIQV 340 (442)
Q Consensus 334 gs~vIEI 340 (442)
|++||-+
T Consensus 226 gaiVIDv 232 (297)
T PRK14167 226 GATVIDV 232 (297)
T ss_pred CCEEEEc
Confidence 9999875
No 55
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.62 E-value=82 Score=31.86 Aligned_cols=70 Identities=21% Similarity=0.364 Sum_probs=50.4
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHH--cCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCc
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAED--IGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGS 335 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~--~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs 335 (442)
..-++++|.|... | -+..+|.+ .|..|.+.... +.++. +..++|||+|..-| +++-..=|.+||+
T Consensus 157 ~Gk~vvViGrS~~VGk------Pla~lL~~~~~~atVtvchs~-T~~l~---~~~k~ADIvV~AvGkp~~i~~~~ik~Ga 226 (284)
T PRK14193 157 AGAHVVVIGRGVTVGR------PIGLLLTRRSENATVTLCHTG-TRDLA---AHTRRADIIVAAAGVAHLVTADMVKPGA 226 (284)
T ss_pred CCCEEEEECCCCcchH------HHHHHHhhccCCCEEEEeCCC-CCCHH---HHHHhCCEEEEecCCcCccCHHHcCCCC
Confidence 3568899999864 4 34555655 68888887643 44444 46788999998877 4566667889999
Q ss_pred EEEEE
Q 013451 336 VFIQV 340 (442)
Q Consensus 336 ~vIEI 340 (442)
+||-+
T Consensus 227 vVIDv 231 (284)
T PRK14193 227 AVLDV 231 (284)
T ss_pred EEEEc
Confidence 99875
No 56
>PRK13337 putative lipid kinase; Reviewed
Probab=43.19 E-value=1.8e+02 Score=28.99 Aligned_cols=68 Identities=13% Similarity=0.234 Sum_probs=45.6
Q ss_pred cCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH--hcCCEEEeechhhhhhhhc---c-CCCcEEEEEeeCC
Q 013451 277 TNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRAL--NSSDVMVGVHGAAMTHFLF---M-KPGSVFIQVIPLG 344 (442)
Q Consensus 277 ~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~--~~adVlVGvHGAgLtN~lF---m-~pgs~vIEI~P~g 344 (442)
...+++.+.+++.|+++.+...+......+.++.. ...|++|.+=|=|..|.+- + .+....+=|+|.|
T Consensus 19 ~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 19 KNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECCc
Confidence 34567888999999887766555445666666544 4578999888877654432 3 2223457788998
No 57
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=41.18 E-value=1.3e+02 Score=30.07 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=55.1
Q ss_pred EEEEEEeCCCccccCHHHHHHHHHHcCCE--EEEEcCCCCCCHHHHHHHHhcCCEEEeechhhhhh---------hhccC
Q 013451 264 KLVILSRNGSRAITNENSLVKMAEDIGFQ--VQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTH---------FLFMK 332 (442)
Q Consensus 264 rv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~--v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgLtN---------~lFm~ 332 (442)
+|++++|... .....+++.+.+.+.+.. +...+.+ +..+.-+.+..+|+||..--.||.. .-+++
T Consensus 152 ~V~I~~R~~~-~~~~a~~l~~~l~~~~~~~~~~~~d~~---~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~ 227 (289)
T PRK12548 152 EITIFNIKDD-FYERAEQTAEKIKQEVPECIVNVYDLN---DTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFR 227 (289)
T ss_pred EEEEEeCCch-HHHHHHHHHHHHhhcCCCceeEEechh---hhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcC
Confidence 5888888641 011234555555544323 3322321 2223334677889999877777643 23578
Q ss_pred CCcEEEEEeeCCCCcccccchHhHHhhcCCcE
Q 013451 333 PGSVFIQVIPLGTDWAAETYYGEPARKLGLKY 364 (442)
Q Consensus 333 pgs~vIEI~P~g~~~~~~~~y~~~A~~~Gl~Y 364 (442)
++.+|++++=.- .++.+-..|+..|.+.
T Consensus 228 ~~~~v~D~vY~P----~~T~ll~~A~~~G~~~ 255 (289)
T PRK12548 228 KDLVVADTVYNP----KKTKLLEDAEAAGCKT 255 (289)
T ss_pred CCCEEEEecCCC----CCCHHHHHHHHCCCee
Confidence 888999987321 2467888899998764
No 58
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.02 E-value=82 Score=31.87 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=48.6
Q ss_pred CCEEEEEEeCCC--ccccCHHHHHHHHHH----cCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechh-hhhhhhccCCC
Q 013451 262 KPKLVILSRNGS--RAITNENSLVKMAED----IGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGA-AMTHFLFMKPG 334 (442)
Q Consensus 262 ~prv~ii~R~~~--R~i~Ne~ev~~~l~~----~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGA-gLtN~lFm~pg 334 (442)
.-++++|.|+.. | -+..+|.+ .|..|.+.... +. ...+.+++|||+|+.-|. ++--.=|.+||
T Consensus 157 Gk~vvViGrS~iVG~------Pla~lL~~~~~~~~AtVt~~hs~-t~---~l~~~~~~ADIVI~AvG~p~li~~~~vk~G 226 (286)
T PRK14184 157 GKKAVVVGRSNIVGK------PLALMLGAPGKFANATVTVCHSR-TP---DLAEECREADFLFVAIGRPRFVTADMVKPG 226 (286)
T ss_pred CCEEEEECCCccchH------HHHHHHhCCcccCCCEEEEEeCC-ch---hHHHHHHhCCEEEEecCCCCcCCHHHcCCC
Confidence 458899999864 4 35566666 67888887643 22 344568999999988775 33334466999
Q ss_pred cEEEEEe
Q 013451 335 SVFIQVI 341 (442)
Q Consensus 335 s~vIEI~ 341 (442)
++||-+=
T Consensus 227 avVIDVG 233 (286)
T PRK14184 227 AVVVDVG 233 (286)
T ss_pred CEEEEee
Confidence 9998763
No 59
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.90 E-value=74 Score=32.00 Aligned_cols=68 Identities=19% Similarity=0.369 Sum_probs=47.6
Q ss_pred EEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechh-hhhhhhccCCCcEEEEE
Q 013451 264 KLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGA-AMTHFLFMKPGSVFIQV 340 (442)
Q Consensus 264 rv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGA-gLtN~lFm~pgs~vIEI 340 (442)
++++|.|.+. | -+..+|.+.|..|.+.... ..++. +.+.+||++|..-|- ++--.=+++||++|+.+
T Consensus 161 ~vvViG~gg~vGk------pia~~L~~~gatVtv~~~~-t~~L~---~~~~~aDIvI~AtG~~~~v~~~~lk~gavViDv 230 (283)
T PRK14192 161 HAVVVGRSAILGK------PMAMMLLNANATVTICHSR-TQNLP---ELVKQADIIVGAVGKPELIKKDWIKQGAVVVDA 230 (283)
T ss_pred EEEEECCcHHHHH------HHHHHHHhCCCEEEEEeCC-chhHH---HHhccCCEEEEccCCCCcCCHHHcCCCCEEEEE
Confidence 7899999872 6 4566777888888887643 33444 456899999998862 22223356789999887
Q ss_pred e
Q 013451 341 I 341 (442)
Q Consensus 341 ~ 341 (442)
.
T Consensus 231 g 231 (283)
T PRK14192 231 G 231 (283)
T ss_pred E
Confidence 5
No 60
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=40.65 E-value=2.1e+02 Score=28.36 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH--hcCCEEEeechhhh----hhhhccCC-C-cEEEEEeeCC
Q 013451 278 NENSLVKMAEDIGFQVQVVRPDRTSELAKIYRAL--NSSDVMVGVHGAAM----THFLFMKP-G-SVFIQVIPLG 344 (442)
Q Consensus 278 Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~--~~adVlVGvHGAgL----tN~lFm~p-g-s~vIEI~P~g 344 (442)
...++++.|++.|+++.+...+......+.++.. ...|++|.+=|=|- .|.++-.+ + ..-+=|+|.|
T Consensus 15 ~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~G 89 (293)
T TIGR03702 15 DVREAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQIRDDAAPALGLLPLG 89 (293)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcCC
Confidence 4557788899999887765544334555555443 55799999999885 45553221 2 2347788998
No 61
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.18 E-value=1e+02 Score=31.34 Aligned_cols=69 Identities=22% Similarity=0.362 Sum_probs=50.0
Q ss_pred CCEEEEEEeCCC--ccccCHHHHHHHHHHc----CCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCC
Q 013451 262 KPKLVILSRNGS--RAITNENSLVKMAEDI----GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPG 334 (442)
Q Consensus 262 ~prv~ii~R~~~--R~i~Ne~ev~~~l~~~----Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pg 334 (442)
.-++++|.|... | -+..+|.+. +..|.+.... +.++.+ ..++|||+|+.-| +++-..=|.+||
T Consensus 157 GK~vvViGrS~iVGk------Pla~lL~~~~~~~~aTVtvchs~-T~nl~~---~~~~ADIvIsAvGkp~~i~~~~vk~g 226 (293)
T PRK14185 157 GKKCVVLGRSNIVGK------PMAQLMMQKAYPGDCTVTVCHSR-SKNLKK---ECLEADIIIAALGQPEFVKADMVKEG 226 (293)
T ss_pred CCEEEEECCCccchH------HHHHHHHcCCCCCCCEEEEecCC-CCCHHH---HHhhCCEEEEccCCcCccCHHHcCCC
Confidence 458899999864 4 355566655 6788877543 445554 5678999998777 567777789999
Q ss_pred cEEEEE
Q 013451 335 SVFIQV 340 (442)
Q Consensus 335 s~vIEI 340 (442)
++||-+
T Consensus 227 avVIDv 232 (293)
T PRK14185 227 AVVIDV 232 (293)
T ss_pred CEEEEe
Confidence 999875
No 62
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=39.43 E-value=74 Score=25.57 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCEEEEEcC---CCCCCHHHHHHHHhcCCEEEeechhh
Q 013451 281 SLVKMAEDIGFQVQVVRP---DRTSELAKIYRALNSSDVMVGVHGAA 324 (442)
Q Consensus 281 ev~~~l~~~Gf~v~v~~~---~~~~s~~eq~~l~~~adVlVGvHGAg 324 (442)
.+.+.+.+.|+..+.++. ....+..--.+.+.+||++||.=|.-
T Consensus 17 ~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~r 63 (83)
T PF13271_consen 17 ALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNR 63 (83)
T ss_pred HHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccc
Confidence 456667777877665543 22456666789999999999988754
No 63
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=39.41 E-value=51 Score=32.38 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=40.5
Q ss_pred EEEEEEeCC------CccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcC
Q 013451 264 KLVILSRNG------SRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSS 314 (442)
Q Consensus 264 rv~ii~R~~------~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~a 314 (442)
-+.||+|++ +..|.|.+.+.+..+.+|++|+.++ ..++.+.++.+.++
T Consensus 173 LiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evd---G~d~~~i~~a~~~~ 226 (243)
T COG3959 173 LIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVD---GHDIEEIVEALEKA 226 (243)
T ss_pred EEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEc---CcCHHHHHHHHHhh
Confidence 567899986 3999999999999999999999887 45888888877665
No 64
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=38.62 E-value=1.1e+02 Score=33.33 Aligned_cols=101 Identities=14% Similarity=0.276 Sum_probs=72.0
Q ss_pred CCCCEEEEEEeC--CCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEee-chhhhhhhhccCC--C
Q 013451 260 SKKPKLVILSRN--GSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGV-HGAAMTHFLFMKP--G 334 (442)
Q Consensus 260 ~~~prv~ii~R~--~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGv-HGAgLtN~lFm~p--g 334 (442)
..+++|=||.-. +.+.--|..||.+.|++.|.+|..+-+. +.++++ ++-+.+|++=|.+ +-.|+.-+=+|.. |
T Consensus 161 ~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~-g~sl~d-i~~~~~A~~NIvl~~~~g~~~A~~Le~~fg 238 (513)
T CHL00076 161 TDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPE-GGSVED-LKNLPKAWFNIVPYREVGLMTAKYLEKEFG 238 (513)
T ss_pred CCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECC-CCCHHH-HHhcccCcEEEEechhhhHHHHHHHHHHhC
Confidence 346677777655 3355678889999999999999876665 456655 5668888887766 3366555666665 5
Q ss_pred cEEEEEeeCCCCcccccchHhHHhhcCCc
Q 013451 335 SVFIQVIPLGTDWAAETYYGEPARKLGLK 363 (442)
Q Consensus 335 s~vIEI~P~g~~~~~~~~y~~~A~~~Gl~ 363 (442)
.-.+...|.|+. ....+-..+|+.+|+.
T Consensus 239 iP~i~~~PiGi~-~T~~fLr~la~~lg~~ 266 (513)
T CHL00076 239 MPYISTTPMGIV-DTAECIRQIQKILNKL 266 (513)
T ss_pred CCeEeeccCCHH-HHHHHHHHHHHHhCCC
Confidence 656777899953 2356788999999964
No 65
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=38.04 E-value=97 Score=28.37 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=44.9
Q ss_pred CCEEEEEEeCCC---ccccCHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHHHH---hcCCEEEeechhhhhhhhccCC
Q 013451 262 KPKLVILSRNGS---RAITNENSLVKMAEDIGFQVQVVR--PDRTSELAKIYRAL---NSSDVMVGVHGAAMTHFLFMKP 333 (442)
Q Consensus 262 ~prv~ii~R~~~---R~i~Ne~ev~~~l~~~Gf~v~v~~--~~~~~s~~eq~~l~---~~adVlVGvHGAgLtN~lFm~p 333 (442)
++|+.+|.=... ..=.|-.-+.+.+++.|+++.... ++..-.+.+.++-. +.+|++|.-=|+|.+--=++|+
T Consensus 4 ~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~e 83 (163)
T TIGR02667 4 PLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPE 83 (163)
T ss_pred ccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHH
Confidence 456555532221 223355567888999999876544 33223566666554 4699999998888765555544
No 66
>PRK13054 lipid kinase; Reviewed
Probab=37.36 E-value=2.5e+02 Score=27.91 Aligned_cols=81 Identities=14% Similarity=0.152 Sum_probs=49.6
Q ss_pred EEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHH--HhcCCEEEeechhhhhh----hhccCC-C-c
Q 013451 264 KLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRA--LNSSDVMVGVHGAAMTH----FLFMKP-G-S 335 (442)
Q Consensus 264 rv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l--~~~adVlVGvHGAgLtN----~lFm~p-g-s 335 (442)
++++|--.+++.-....++++.+++.|+++.+...+......++++. -...|++|.+=|=|--| .+.-.+ + -
T Consensus 5 ~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~~~~~~ 84 (300)
T PRK13054 5 KSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTINEVATALAQLEGDAR 84 (300)
T ss_pred eEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhhccCCC
Confidence 44444434444334556778889999988766554433455666544 35689999988888544 443212 2 2
Q ss_pred EEEEEeeCC
Q 013451 336 VFIQVIPLG 344 (442)
Q Consensus 336 ~vIEI~P~g 344 (442)
..+=|+|.|
T Consensus 85 ~~lgiiP~G 93 (300)
T PRK13054 85 PALGILPLG 93 (300)
T ss_pred CcEEEEeCC
Confidence 458889998
No 67
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=36.51 E-value=79 Score=33.14 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=62.2
Q ss_pred CCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEee-c--hhhhhhhhccCCCcEEE
Q 013451 262 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGV-H--GAAMTHFLFMKPGSVFI 338 (442)
Q Consensus 262 ~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGv-H--GAgLtN~lFm~pgs~vI 338 (442)
+..|-||.- ....-|..|+.+.|++.|.+|..+-+. ..+++|. +-+.+|.+-|.+ + |..++..|=-+=|.-.+
T Consensus 158 ~~~VNiig~--~~~~~d~~el~~lL~~~Gl~v~~~~~~-~~s~eei-~~~~~A~lniv~~~~~~~~~a~~L~~~fGip~~ 233 (410)
T cd01968 158 PYDINLIGE--FNVAGELWGVKPLLEKLGIRVLASITG-DSRVDEI-RRAHRAKLNVVQCSKSMIYLARKMEEKYGIPYI 233 (410)
T ss_pred CCcEEEECC--CCCcccHHHHHHHHHHcCCeEEEEeCC-CCCHHHH-HhhhhCcEEEEEchhHHHHHHHHHHHHhCCCeE
Confidence 345556652 233457789999999999999865554 4677664 456666665544 2 32333333223366666
Q ss_pred EEeeCCCCcccccchHhHHhhcCCc
Q 013451 339 QVIPLGTDWAAETYYGEPARKLGLK 363 (442)
Q Consensus 339 EI~P~g~~~~~~~~y~~~A~~~Gl~ 363 (442)
...|+|++- ...+++.+|+..|..
T Consensus 234 ~~~p~G~~~-t~~~l~~ia~~~g~~ 257 (410)
T cd01968 234 EVSFYGIRD-TSKSLRNIAELLGDE 257 (410)
T ss_pred ecCcCcHHH-HHHHHHHHHHHhCCc
Confidence 777888643 466899999999974
No 68
>PLN02928 oxidoreductase family protein
Probab=36.03 E-value=4.6e+02 Score=27.02 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCEEEEEcCCCC---------------------CCHHHHHHHHhcCCEEEee--------chhhhhhhhcc
Q 013451 281 SLVKMAEDIGFQVQVVRPDRT---------------------SELAKIYRALNSSDVMVGV--------HGAAMTHFLFM 331 (442)
Q Consensus 281 ev~~~l~~~Gf~v~v~~~~~~---------------------~s~~eq~~l~~~adVlVGv--------HGAgLtN~lFm 331 (442)
++++.|+.+|++|...+.... ....+.-+++++||+++.. |=-+-..+--|
T Consensus 173 ~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~M 252 (347)
T PLN02928 173 ELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSM 252 (347)
T ss_pred HHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcC
Q ss_pred CCCcEEEEEeeCCCCcccccchHhHHhhcCCcEEEEEeccCCCccccccCCCCCccCCCCcc---cccCccccceeecCC
Q 013451 332 KPGSVFIQVIPLGTDWAAETYYGEPARKLGLKYIGYTILPRESSLYDQYDKNDPVLRDPSSV---NEKGWQYTKTIYLDG 408 (442)
Q Consensus 332 ~pgs~vIEI~P~g~~~~~~~~y~~~A~~~Gl~Y~~y~i~~~Essl~~~y~~~~~v~~dP~~~---~~~gw~~~~~~yl~~ 408 (442)
+||+.+|-+---++ ..+.---..-+.-.+...+-.+...|- .+.+||.+..|..+ |-.|+..
T Consensus 253 k~ga~lINvaRG~l--Vde~AL~~AL~~g~i~gAaLDV~~~EP-----~~~~~pL~~~~nviiTPHia~~t~-------- 317 (347)
T PLN02928 253 KKGALLVNIARGGL--LDYDAVLAALESGHLGGLAIDVAWSEP-----FDPDDPILKHPNVIITPHVAGVTE-------- 317 (347)
T ss_pred CCCeEEEECCCccc--cCHHHHHHHHHcCCeeEEEEccCCCCC-----CCCCChhhcCCCEEECCcCCCChH--------
Q ss_pred CceEEehHHHHHHHHHHHHHHHHhhhcc
Q 013451 409 QNVRLNLRRFQKRLVRAYDYSINRISQN 436 (442)
Q Consensus 409 Qdv~vDi~rF~~~L~~al~~~~~~~~~~ 436 (442)
+.+......+.+...+++..+
T Consensus 318 -------~~~~~~~~~~~~nl~~~~~g~ 338 (347)
T PLN02928 318 -------YSYRSMGKIVGDAALQLHAGR 338 (347)
T ss_pred -------HHHHHHHHHHHHHHHHHHCCC
No 69
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=35.54 E-value=1.2e+02 Score=28.43 Aligned_cols=66 Identities=11% Similarity=0.081 Sum_probs=44.9
Q ss_pred CCCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhh
Q 013451 260 SKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAM 325 (442)
Q Consensus 260 ~~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgL 325 (442)
...+++++|.-...-.=...++..++++++|++++.+..-...+-++..+.+.+||+++=.=|.-.
T Consensus 27 ~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~ 92 (210)
T cd03129 27 GAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQL 92 (210)
T ss_pred CCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHH
Confidence 357899999766531112335678888999998876553212456788899999999876555543
No 70
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=35.05 E-value=46 Score=34.10 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhh
Q 013451 281 SLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAM 325 (442)
Q Consensus 281 ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgL 325 (442)
+++++|+..||+++++|.-.----+-.+.-+..+-++|-+.|+|=
T Consensus 134 ~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD 178 (323)
T COG1703 134 EAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAGD 178 (323)
T ss_pred HHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCCc
Confidence 789999999999999996411112223444555566666777663
No 71
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=34.06 E-value=2e+02 Score=30.20 Aligned_cols=97 Identities=14% Similarity=0.099 Sum_probs=63.2
Q ss_pred CCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccC--CCcEEE
Q 013451 262 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMK--PGSVFI 338 (442)
Q Consensus 262 ~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~--pgs~vI 338 (442)
+.+|-+|. ....--|..|+.+.|++.|.+++..-+. ..+++| ++-+.+|.+-|.+.+ .|+--+-+|. =|.-.+
T Consensus 162 ~~~VNliG--~~~~~~d~~ei~~lL~~~Gl~v~~~~~~-~~t~~e-i~~~~~A~lnlv~~~~~~~~~A~~L~er~GiP~~ 237 (415)
T cd01977 162 DYTINYIG--DYNIQGDTEVLQKYFERMGIQVLSTFTG-NGTYDD-LRWMHRAKLNVVNCARSAGYIANELKKRYGIPRL 237 (415)
T ss_pred CCcEEEEc--cCCCcccHHHHHHHHHHcCCeEEEEECC-CCCHHH-HHhcccCCEEEEEchhHHHHHHHHHHHHhCCCeE
Confidence 34566664 2233456678999999999999754443 466666 667888887665543 3433333443 366667
Q ss_pred EEeeCCCCcccccchHhHHhhcCCc
Q 013451 339 QVIPLGTDWAAETYYGEPARKLGLK 363 (442)
Q Consensus 339 EI~P~g~~~~~~~~y~~~A~~~Gl~ 363 (442)
.+-|+|++- ...+++.+|+.+|+.
T Consensus 238 ~~~~~G~~~-t~~~l~~la~~~g~~ 261 (415)
T cd01977 238 DVDGFGFEY-CAESLRKIGAFFGIE 261 (415)
T ss_pred EeccCCHHH-HHHHHHHHHHHhCcc
Confidence 777888542 356899999999965
No 72
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=33.33 E-value=1.5e+02 Score=26.36 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=38.7
Q ss_pred CCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCE
Q 013451 261 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDV 316 (442)
Q Consensus 261 ~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adV 316 (442)
++|++++..=.+-..-+...-+..+++..||+|+.+-. ..+.++.++.+.+.++
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~--~vp~e~i~~~a~~~~~ 55 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGV--MTSQEEFIDAAIETDA 55 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCC--CCCHHHHHHHHHHcCC
Confidence 35777766555545555555567788899999997655 4899999988887554
No 73
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=33.07 E-value=1.1e+02 Score=26.63 Aligned_cols=54 Identities=22% Similarity=0.438 Sum_probs=34.3
Q ss_pred EEEEEEeCCCccccCHHHHHHH----HHHcCCEEEEEcCCCC-C---------------CHHHHHHHHhcCCEEE
Q 013451 264 KLVILSRNGSRAITNENSLVKM----AEDIGFQVQVVRPDRT-S---------------ELAKIYRALNSSDVMV 318 (442)
Q Consensus 264 rv~ii~R~~~R~i~Ne~ev~~~----l~~~Gf~v~v~~~~~~-~---------------s~~eq~~l~~~adVlV 318 (442)
|+++|.=. .|.=-|-..+++. +++.|.++.++++... . .+.+-++.+.+||.+|
T Consensus 2 kilii~gS-~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI 75 (152)
T PF03358_consen 2 KILIINGS-PRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGII 75 (152)
T ss_dssp EEEEEESS-SSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEE
T ss_pred EEEEEECc-CCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEE
Confidence 56666422 1555555555444 4556999999988631 1 3455688999999877
No 74
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=32.86 E-value=3.6e+02 Score=26.53 Aligned_cols=81 Identities=12% Similarity=0.185 Sum_probs=49.8
Q ss_pred EEEEEEeC--CC-ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH--hcCCEEEeechhhhhh----hhccCCC
Q 013451 264 KLVILSRN--GS-RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRAL--NSSDVMVGVHGAAMTH----FLFMKPG 334 (442)
Q Consensus 264 rv~ii~R~--~~-R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~--~~adVlVGvHGAgLtN----~lFm~pg 334 (442)
|+.+|-.. ++ +.-....++.+.+++.|+++.+...+......++++.. ..+|++|.+=|=|--| .+.....
T Consensus 3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~~~~ 82 (293)
T TIGR00147 3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINEVVNALIQLDD 82 (293)
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHHHHHHHhcCCC
Confidence 45555555 32 21223457888899999988776654323455555422 3478999888877655 4544334
Q ss_pred cEEEEEeeCC
Q 013451 335 SVFIQVIPLG 344 (442)
Q Consensus 335 s~vIEI~P~g 344 (442)
...|=++|.|
T Consensus 83 ~~~lgiiP~G 92 (293)
T TIGR00147 83 IPALGILPLG 92 (293)
T ss_pred CCcEEEEcCc
Confidence 4467788998
No 75
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=32.66 E-value=71 Score=29.63 Aligned_cols=60 Identities=25% Similarity=0.387 Sum_probs=34.6
Q ss_pred HHHHHHHcCCEEEEEcCCCC---------CCHHHHHHHHhcCCEEEeechh----hhhhhhccCCCcEEEEEe
Q 013451 282 LVKMAEDIGFQVQVVRPDRT---------SELAKIYRALNSSDVMVGVHGA----AMTHFLFMKPGSVFIQVI 341 (442)
Q Consensus 282 v~~~l~~~Gf~v~v~~~~~~---------~s~~eq~~l~~~adVlVGvHGA----gLtN~lFm~pgs~vIEI~ 341 (442)
+++.|+..|..|.|.|.+.- .....--+++..+|++|..-|. ..-++--|++|+.|.-+=
T Consensus 38 ~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~G 110 (162)
T PF00670_consen 38 IARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATGNKDVITGEHFRQMKDGAILANAG 110 (162)
T ss_dssp HHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESS
T ss_pred HHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCCCccccCHHHHHHhcCCeEEeccC
Confidence 56667777777777665310 0000112467899999999995 345677799999996553
No 76
>PRK13059 putative lipid kinase; Reviewed
Probab=32.23 E-value=3.3e+02 Score=27.09 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHH-H-HhcCCEEEeechhhhhhhh---ccCCC-cEEEEEeeCC
Q 013451 278 NENSLVKMAEDIGFQVQVVRPDRTSELAKIYR-A-LNSSDVMVGVHGAAMTHFL---FMKPG-SVFIQVIPLG 344 (442)
Q Consensus 278 Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~-l-~~~adVlVGvHGAgLtN~l---Fm~pg-s~vIEI~P~g 344 (442)
..+++.+.+++.|+++.+......... ++++ . -..+|++|.+=|=|-.|.+ .+..+ .+-+=|+|.|
T Consensus 20 ~~~~i~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 20 ELDKVIRIHQEKGYLVVPYRISLEYDL-KNAFKDIDESYKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred HHHHHHHHHHHCCcEEEEEEccCcchH-HHHHHHhhcCCCEEEEECCccHHHHHHHHHHhcCCCCcEEEECCC
Confidence 346788889999999876655422232 2222 2 2457999999998866544 13222 3457889998
No 77
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=32.16 E-value=91 Score=27.90 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechh
Q 013451 280 NSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGA 323 (442)
Q Consensus 280 ~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGA 323 (442)
+++.++++++|+++..++.. ..+-.+..+.+.+||++.=.=|.
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~-~~~~~~~~~~i~~ad~I~~~GG~ 45 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLS-DRNDADILEAIREADAIFLGGGD 45 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCT-SCGHHHHHHHHHHSSEEEE--S-
T ss_pred HHHHHHHHHCCCEEEEEecc-CCChHHHHHHHHhCCEEEECCCC
Confidence 45677788888888777765 34566777788888887654443
No 78
>KOG4698 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.77 E-value=9.9 Score=40.81 Aligned_cols=101 Identities=11% Similarity=0.084 Sum_probs=70.8
Q ss_pred ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhccCCCcEEEEEeeCCCCcccccch
Q 013451 274 RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYY 353 (442)
Q Consensus 274 R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgLtN~lFm~pgs~vIEI~P~g~~~~~~~~y 353 (442)
+.++|+.+ +...++.-+-+.....=-...+.+-++.+++.. +.+|+++..--.|.+.+..+++-+|++.+.....+|
T Consensus 192 pL~it~~~-~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~--~v~~~~~~~ThcF~~~~vgL~~h~~y~v~~t~~~~~ 268 (475)
T KOG4698|consen 192 PLFITEAE-LRFNKEVQFLITETHSWWDMKFGDVVRQLSNYP--VVDFDAELRTHCFKEAIVGLVSHFPYAVNPTQPPPN 268 (475)
T ss_pred hhhcccch-hcccccEEEEEEEcchhhhhhHHHHHHhcCCCc--eEEecCCceEEEeeeeeeeeeecccccccCCcCCCc
Confidence 67777777 333333322222111102478999999999999 889999999999999999999999999777667777
Q ss_pred Hh--HHhhcCCcEEEEEeccCCCccc
Q 013451 354 GE--PARKLGLKYIGYTILPRESSLY 377 (442)
Q Consensus 354 ~~--~A~~~Gl~Y~~y~i~~~Essl~ 377 (442)
+. +...+.+-+.+|.....|..+.
T Consensus 269 ~~~s~~~fr~~l~~a~~~~i~~~~~t 294 (475)
T KOG4698|consen 269 GTLSMLDFRNLLDKALSPRIPEANVT 294 (475)
T ss_pred cccccccHHHHHHHHhcccccccccC
Confidence 54 3355666777777655554444
No 79
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=30.86 E-value=2.2e+02 Score=25.88 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=31.5
Q ss_pred CCCCEEEEEEeCC---CccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCC
Q 013451 260 SKKPKLVILSRNG---SRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSD 315 (442)
Q Consensus 260 ~~~prv~ii~R~~---~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~ad 315 (442)
.+|||+++..=.- .|.. .-+..+++..||+|+..-. ..+-.|.++..-+.|
T Consensus 10 g~rprvlvak~GlDgHd~ga---kvia~~l~d~GfeVi~~g~--~~tp~e~v~aA~~~d 63 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGA---KVIARALADAGFEVINLGL--FQTPEEAVRAAVEED 63 (143)
T ss_pred CCCceEEEeccCccccccch---HHHHHHHHhCCceEEecCC--cCCHHHHHHHHHhcC
Confidence 5799988654321 1332 2356778899999986443 356677666663333
No 80
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=30.82 E-value=1.7e+02 Score=28.64 Aligned_cols=51 Identities=27% Similarity=0.326 Sum_probs=37.3
Q ss_pred HhcCCEEEeechhhhhhh--------hccCCCcEEEEEeeCCCCcccccchHhHHhhcCCcEE
Q 013451 311 LNSSDVMVGVHGAAMTHF--------LFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKYI 365 (442)
Q Consensus 311 ~~~adVlVGvHGAgLtN~--------lFm~pgs~vIEI~P~g~~~~~~~~y~~~A~~~Gl~Y~ 365 (442)
..++|++|..-++|+... -+++++..|+++.-.- ..+.+...|+..|.+++
T Consensus 176 ~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p----~~T~ll~~A~~~G~~~v 234 (270)
T TIGR00507 176 LHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNP----GETPFLAEAKSLGTKTI 234 (270)
T ss_pred ccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCC----CCCHHHHHHHHCCCeee
Confidence 357999999999887432 2378899999996322 23467888999998764
No 81
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=30.44 E-value=51 Score=31.63 Aligned_cols=84 Identities=23% Similarity=0.321 Sum_probs=54.6
Q ss_pred cCHHHHHHHHHHc--CCEEEEEcCCC----CCCHHHHHHHHhcCCEEEeechhhhhhhhccCCCcEEEEEeeCCCCcccc
Q 013451 277 TNENSLVKMAEDI--GFQVQVVRPDR----TSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAE 350 (442)
Q Consensus 277 ~Ne~ev~~~l~~~--Gf~v~v~~~~~----~~s~~eq~~l~~~adVlVGvHGAgLtN~lFm~pgs~vIEI~P~g~~~~~~ 350 (442)
+|. .+.+++.+. .-++.++-.+- ...+++.++.-.++||+|++-=-|=||++|.++ +-+++- +| .-
T Consensus 72 LN~-Ai~aa~~~~~~p~~v~vvmaDLPLl~~~~i~~~~~~~~d~dvviaP~~gGGTn~L~~r~--~~~~~~-y~----g~ 143 (210)
T COG1920 72 LNT-AINAALDEIPLPSEVIVVMADLPLLSPEHIERALSAAKDADVVIAPGRGGGTNVLFARK--SAFRPR-YG----GV 143 (210)
T ss_pred hHH-HHHHHHhhCCCCcceEEEecccccCCHHHHHHHHHhcCCCcEEEecCCCCceEEEEEec--cccccc-cc----Cc
Confidence 553 355555543 23455554331 124677888889999999999999999999999 222221 11 23
Q ss_pred cchHh--HHhhcCCcEEEEE
Q 013451 351 TYYGE--PARKLGLKYIGYT 368 (442)
Q Consensus 351 ~~y~~--~A~~~Gl~Y~~y~ 368 (442)
.++.. .|+.+|+.+..|.
T Consensus 144 SF~~Hl~~Ark~G~~~~~~d 163 (210)
T COG1920 144 SFLRHLEEARKRGLVVLTYD 163 (210)
T ss_pred cHHHHHHHHHHcCCEEEEec
Confidence 34554 5899999998775
No 82
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=30.30 E-value=3.6e+02 Score=27.14 Aligned_cols=90 Identities=19% Similarity=0.283 Sum_probs=59.4
Q ss_pred EEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHh--cCCEEEeechhhhhh----hhccCCCcEE
Q 013451 266 VILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALN--SSDVMVGVHGAAMTH----FLFMKPGSVF 337 (442)
Q Consensus 266 ~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~--~adVlVGvHGAgLtN----~lFm~pgs~v 337 (442)
+|+.+... ..-...+++.+.|++.|.++.+...+..-...+-++.+. .-|.+|+.=|=|.-| .++-.+...
T Consensus 7 ~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~~~~- 85 (301)
T COG1597 7 LIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTDDPP- 85 (301)
T ss_pred EEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCCCCc-
Confidence 44555443 334445678899999999987776653224444444433 789999999988655 666655554
Q ss_pred EEEeeCCCCcccccchHhHHhhcCCc
Q 013451 338 IQVIPLGTDWAAETYYGEPARKLGLK 363 (442)
Q Consensus 338 IEI~P~g~~~~~~~~y~~~A~~~Gl~ 363 (442)
+=|+|.|. ....|+.+|+.
T Consensus 86 LgilP~GT-------~NdfAr~Lgip 104 (301)
T COG1597 86 LGILPGGT-------ANDFARALGIP 104 (301)
T ss_pred eEEecCCc-------hHHHHHHcCCC
Confidence 88999992 34567777764
No 83
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=30.29 E-value=70 Score=34.27 Aligned_cols=97 Identities=12% Similarity=0.094 Sum_probs=64.1
Q ss_pred CCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeec---hhhhhhhhccCCCcEEE
Q 013451 262 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVH---GAAMTHFLFMKPGSVFI 338 (442)
Q Consensus 262 ~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvH---GAgLtN~lFm~pgs~vI 338 (442)
+..|-+|. ..-.--|..|+.+.|++.|++++..-+. +.+++| ++-+.+|+.-|.+. |..++..|=-+=|.-.+
T Consensus 199 ~~~VNiiG--~~~~~gd~~el~~lL~~~Gl~v~~~~~g-~~s~~e-i~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP~~ 274 (457)
T TIGR01284 199 EYDVNLIG--EYNIQGDLWVLKKYFERMGIQVLSTFTG-NGCYDE-LRWMHRAKLNVVRCARSANYIANELEERYGIPRL 274 (457)
T ss_pred CCeEEEEc--cCCchhhHHHHHHHHHHcCCeEEEEECC-CCCHHH-HHhccccCEEEEEChHHHHHHHHHHHHHhCCCeE
Confidence 34566664 2122245678899999999999754444 456655 55677777755433 43456655445577788
Q ss_pred EEeeCCCCcccccchHhHHhhcCCc
Q 013451 339 QVIPLGTDWAAETYYGEPARKLGLK 363 (442)
Q Consensus 339 EI~P~g~~~~~~~~y~~~A~~~Gl~ 363 (442)
.+-|+|++. ...+.+.+|+..|+.
T Consensus 275 ~~~~~G~~~-T~~~l~~ia~~~g~~ 298 (457)
T TIGR01284 275 DIDFFGFEY-CAKNLRKIGEFFGIE 298 (457)
T ss_pred ecccCCHHH-HHHHHHHHHHHhCCc
Confidence 887888643 356899999999975
No 84
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=29.82 E-value=85 Score=27.90 Aligned_cols=53 Identities=25% Similarity=0.390 Sum_probs=36.8
Q ss_pred cccCHHHHHHHHHHcCCEEEEEcC--CCCCCHHHHHHH-HhcCCEEEeechhhhhh
Q 013451 275 AITNENSLVKMAEDIGFQVQVVRP--DRTSELAKIYRA-LNSSDVMVGVHGAAMTH 327 (442)
Q Consensus 275 ~i~Ne~ev~~~l~~~Gf~v~v~~~--~~~~s~~eq~~l-~~~adVlVGvHGAgLtN 327 (442)
.=.|..-+.+.|++.|+++..... +....+.++++. ..++|++|..=|+|.+.
T Consensus 25 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g~ 80 (144)
T TIGR00177 25 YDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGVGP 80 (144)
T ss_pred EeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCCCC
Confidence 345666788899999999875542 222356666654 46799999998877653
No 85
>PRK11914 diacylglycerol kinase; Reviewed
Probab=29.82 E-value=2.3e+02 Score=28.16 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=44.9
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH--hcCCEEEeechhhhhhhhc---cCCCcEEEEEeeCC
Q 013451 276 ITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRAL--NSSDVMVGVHGAAMTHFLF---MKPGSVFIQVIPLG 344 (442)
Q Consensus 276 i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~--~~adVlVGvHGAgLtN~lF---m~pgs~vIEI~P~g 344 (442)
-...+++++.|++.|+++.+...+..-...++++.. ..+|++|.+=|=|-.|.+= +..+ .-+=|+|.|
T Consensus 25 ~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~~l~~~~-~~lgiiP~G 97 (306)
T PRK11914 25 PHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVISNALQVLAGTD-IPLGIIPAG 97 (306)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHhHHhccCC-CcEEEEeCC
Confidence 344567888999999987766554223445555433 4579999988888655432 3333 457889998
No 86
>PRK13055 putative lipid kinase; Reviewed
Probab=29.76 E-value=3.5e+02 Score=27.45 Aligned_cols=68 Identities=12% Similarity=0.228 Sum_probs=42.9
Q ss_pred cCHHHHHHHHHHcCCEEEEEcCC-CCCCHHHHHHHH--hcCCEEEeechhhhhh----hhccCCCcEEEEEeeCC
Q 013451 277 TNENSLVKMAEDIGFQVQVVRPD-RTSELAKIYRAL--NSSDVMVGVHGAAMTH----FLFMKPGSVFIQVIPLG 344 (442)
Q Consensus 277 ~Ne~ev~~~l~~~Gf~v~v~~~~-~~~s~~eq~~l~--~~adVlVGvHGAgLtN----~lFm~pgs~vIEI~P~g 344 (442)
...+++.+.|++.|+++.+.... ......+.++.. ...|+||.+=|=|-.| .+.-......+=|+|.|
T Consensus 20 ~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~G 94 (334)
T PRK13055 20 KNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAPLEKRPKMAIIPAG 94 (334)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhhcCCCCcEEEECCC
Confidence 34567888999999887765443 123444444333 4579999988888655 44311223568889998
No 87
>PRK05568 flavodoxin; Provisional
Probab=29.63 E-value=1e+02 Score=26.71 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=35.1
Q ss_pred CCEEEEEEeCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEE
Q 013451 262 KPKLVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMV 318 (442)
Q Consensus 262 ~prv~ii~R~~~-R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlV 318 (442)
+.-++|.|..|+ +++.+ .+.+.+++.|.++.+.+.. +.... .+.++|.+|
T Consensus 3 ~~~IvY~S~~GnT~~~a~--~i~~~~~~~g~~v~~~~~~-~~~~~----~~~~~d~ii 53 (142)
T PRK05568 3 KINIIYWSGTGNTEAMAN--LIAEGAKENGAEVKLLNVS-EASVD----DVKGADVVA 53 (142)
T ss_pred eEEEEEECCCchHHHHHH--HHHHHHHHCCCeEEEEECC-CCCHH----HHHhCCEEE
Confidence 356788898886 66653 5677777889999988876 34443 356777755
No 88
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=28.70 E-value=83 Score=33.42 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCC--EEEeechhhhhhhhccCCCcEEEEEeeCCCCcccccchHh
Q 013451 278 NENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSD--VMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYYGE 355 (442)
Q Consensus 278 Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~ad--VlVGvHGAgLtN~lFm~pgs~vIEI~P~g~~~~~~~~y~~ 355 (442)
|..|+.+.|++.|.++.++-+. .+++| ++-+.+|. ++++.+. +.+-.++.+-|.-.++..|.|++- ...+.+.
T Consensus 178 d~~eik~lL~~~Gi~~~~~~~G--~~~~e-i~~a~~A~~~i~l~~~~-~~a~~l~~~~GvP~~~~~PiG~~~-Td~fL~~ 252 (422)
T TIGR02015 178 DAMVIGGVLQPIGVESGPTVPG--RDWRE-LYAALDSSAVAVLHPFY-EATARLFEAAGVKIVGSAPVGANG-TGEWLER 252 (422)
T ss_pred cHHHHHHHHHHcCCCeEEecCC--CCHHH-HHhhhcCeEEEEeCccc-hHHHHHHHHcCCceeccCCCChHH-HHHHHHH
Confidence 6678999999999999776654 46655 45555544 4455443 456777777777678888999653 4568899
Q ss_pred HHhhcCCc
Q 013451 356 PARKLGLK 363 (442)
Q Consensus 356 ~A~~~Gl~ 363 (442)
+|+..|..
T Consensus 253 la~~~G~~ 260 (422)
T TIGR02015 253 IGEALDLD 260 (422)
T ss_pred HHHHhCcC
Confidence 99999964
No 89
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=28.60 E-value=1.1e+02 Score=28.38 Aligned_cols=88 Identities=15% Similarity=0.234 Sum_probs=44.7
Q ss_pred EEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHH-HHHHhcCCEEEeechhhhhhhhccCCCcEEEEEee
Q 013451 266 VILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKI-YRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIP 342 (442)
Q Consensus 266 ~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq-~~l~~~adVlVGvHGAgLtN~lFm~pgs~vIEI~P 342 (442)
.+++|.|. +-.-+..++++.|++.|..+.+.+-...-..+.| ++++ ++- ..-.....|...-.-+||.|
T Consensus 35 ~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l---~i~-----~~~~~~~~~~~~F~~~eI~~ 106 (169)
T PF12689_consen 35 VVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLL---EID-----DADGDGVPLIEYFDYLEIYP 106 (169)
T ss_dssp -EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHT---T-C---------------CCECEEEESS
T ss_pred EEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhc---CCC-----ccccccccchhhcchhheec
Confidence 67889887 8888999999999999999988874311223333 2222 222 11234445555555588888
Q ss_pred CCCCcccccchHhHHhhcCCcEE
Q 013451 343 LGTDWAAETYYGEPARKLGLKYI 365 (442)
Q Consensus 343 ~g~~~~~~~~y~~~A~~~Gl~Y~ 365 (442)
-. ...+|.++.+..|+.|-
T Consensus 107 gs----K~~Hf~~i~~~tgI~y~ 125 (169)
T PF12689_consen 107 GS----KTTHFRRIHRKTGIPYE 125 (169)
T ss_dssp S-----HHHHHHHHHHHH---GG
T ss_pred Cc----hHHHHHHHHHhcCCChh
Confidence 53 46789999999999884
No 90
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.48 E-value=1.5e+02 Score=24.36 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHcCCEEEEE--cCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhccCCCcEEEEEeeCCCCcccccchHh
Q 013451 278 NENSLVKMAEDIGFQVQVV--RPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYYGE 355 (442)
Q Consensus 278 Ne~ev~~~l~~~Gf~v~v~--~~~~~~s~~eq~~l~~~adVlVGvHGAgLtN~lFm~pgs~vIEI~P~g~~~~~~~~y~~ 355 (442)
++.++.+.+++.|++.... +......-...-..+.+||++|-+-+. +.+.....-..
T Consensus 11 ~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~---------------------vsH~~~~~vk~ 69 (97)
T PF10087_consen 11 RERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDY---------------------VSHNAMWKVKK 69 (97)
T ss_pred cHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCC---------------------cChHHHHHHHH
Confidence 4567888899999998887 222112222345578999998743221 22222334567
Q ss_pred HHhhcCCcEE
Q 013451 356 PARKLGLKYI 365 (442)
Q Consensus 356 ~A~~~Gl~Y~ 365 (442)
.|+..|+.++
T Consensus 70 ~akk~~ip~~ 79 (97)
T PF10087_consen 70 AAKKYGIPII 79 (97)
T ss_pred HHHHcCCcEE
Confidence 7788887764
No 91
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=28.36 E-value=2e+02 Score=26.48 Aligned_cols=71 Identities=21% Similarity=0.211 Sum_probs=42.3
Q ss_pred CEEEEEEeCCCccccCHHHHHHHHH-HcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhhhh----hhccCCCcEE
Q 013451 263 PKLVILSRNGSRAITNENSLVKMAE-DIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTH----FLFMKPGSVF 337 (442)
Q Consensus 263 prv~ii~R~~~R~i~Ne~ev~~~l~-~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgLtN----~lFm~pgs~v 337 (442)
-++++++|+.. ..+++.+.++ ..+.++...+. .+..+..+.++.+|++|..-.+|+.+ ..+..++.++
T Consensus 53 ~~V~l~~R~~~----~~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv 125 (194)
T cd01078 53 ARVVLVGRDLE----RAQKAADSLRARFGEGVGAVET---SDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVA 125 (194)
T ss_pred CEEEEEcCCHH----HHHHHHHHHHhhcCCcEEEeeC---CCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEE
Confidence 37777877532 2334444444 23556555443 46666678889999999988888742 1122345666
Q ss_pred EEE
Q 013451 338 IQV 340 (442)
Q Consensus 338 IEI 340 (442)
+.+
T Consensus 126 ~D~ 128 (194)
T cd01078 126 ADV 128 (194)
T ss_pred EEc
Confidence 664
No 92
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=27.76 E-value=2.4e+02 Score=28.09 Aligned_cols=80 Identities=16% Similarity=0.224 Sum_probs=47.0
Q ss_pred CCEEEEEEeCC--Ccccc--CHHHHHHHHHHcCCEEEEE-cC-------------------CCCCCHHHHHHHHhcCCEE
Q 013451 262 KPKLVILSRNG--SRAIT--NENSLVKMAEDIGFQVQVV-RP-------------------DRTSELAKIYRALNSSDVM 317 (442)
Q Consensus 262 ~prv~ii~R~~--~R~i~--Ne~ev~~~l~~~Gf~v~v~-~~-------------------~~~~s~~eq~~l~~~adVl 317 (442)
++.++++.-.. .|++- +-.||++.+.+.|+.+++. .. ...+++.|-+++++.||++
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~ 257 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAV 257 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEE
Confidence 44554443322 26665 3457777777678877664 11 1147899999999999999
Q ss_pred EeechhhhhhhhccCCCcEEEEEeeC
Q 013451 318 VGVHGAAMTHFLFMKPGSVFIQVIPL 343 (442)
Q Consensus 318 VGvHGAgLtN~lFm~pgs~vIEI~P~ 343 (442)
||.=.. ..|+.-+ =|+-+|-|+..
T Consensus 258 I~nDSG-p~HlA~A-~g~p~valfGp 281 (322)
T PRK10964 258 VSVDTG-LSHLTAA-LDRPNITLYGP 281 (322)
T ss_pred EecCCc-HHHHHHH-hCCCEEEEECC
Confidence 997433 3332211 13445555543
No 93
>PRK13057 putative lipid kinase; Reviewed
Probab=27.48 E-value=3.2e+02 Score=26.94 Aligned_cols=66 Identities=15% Similarity=0.304 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHH-HhcCCEEEeechhhhhhhh---ccCCCcEEEEEeeCC
Q 013451 278 NENSLVKMAEDIGFQVQVVRPDRTSELAKIYRA-LNSSDVMVGVHGAAMTHFL---FMKPGSVFIQVIPLG 344 (442)
Q Consensus 278 Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l-~~~adVlVGvHGAgLtN~l---Fm~pgs~vIEI~P~g 344 (442)
..+++.+.|++.|+++.+...+......+.++. ....|++|.+=|=|--|.+ .+..+ .-+=++|.|
T Consensus 14 ~~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~~~~d~iiv~GGDGTv~~v~~~l~~~~-~~lgiiP~G 83 (287)
T PRK13057 14 ALAAARAALEAAGLELVEPPAEDPDDLSEVIEAYADGVDLVIVGGGDGTLNAAAPALVETG-LPLGILPLG 83 (287)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHcCCCEEEEECchHHHHHHHHHHhcCC-CcEEEECCC
Confidence 356889999999999877665423334444433 4567999999888865544 23333 447788998
No 94
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=27.32 E-value=2.2e+02 Score=25.94 Aligned_cols=64 Identities=20% Similarity=0.337 Sum_probs=36.0
Q ss_pred CCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcC-----CEEEeechhhhhh
Q 013451 262 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSS-----DVMVGVHGAAMTH 327 (442)
Q Consensus 262 ~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~a-----dVlVGvHGAgLtN 327 (442)
..++++++|++... ....+.++.+++.|.+|.+...+ -.+..+-.+++..+ .|---+|+||...
T Consensus 25 ~~~~il~~r~~~~~-~~~~~~i~~l~~~g~~v~~~~~D-v~d~~~v~~~~~~~~~~~~~i~gVih~ag~~~ 93 (181)
T PF08659_consen 25 ARRLILLGRSGAPS-AEAEAAIRELESAGARVEYVQCD-VTDPEAVAAALAQLRQRFGPIDGVIHAAGVLA 93 (181)
T ss_dssp -SEEEEEESSGGGS-TTHHHHHHHHHHTT-EEEEEE---TTSHHHHHHHHHTSHTTSS-EEEEEE------
T ss_pred CCEEEEeccCCCcc-HHHHHHHHHHHhCCCceeeeccC-ccCHHHHHHHHHHHHhccCCcceeeeeeeeec
Confidence 56899999984211 12235788888889999988876 35555555565554 5667789999855
No 95
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.27 E-value=2.1e+02 Score=25.28 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=31.8
Q ss_pred HHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCE-EEeechhhhhhhhcc
Q 013451 282 LVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDV-MVGVHGAAMTHFLFM 331 (442)
Q Consensus 282 v~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adV-lVGvHGAgLtN~lFm 331 (442)
+...++..||+|+-... ..+.++.++...+.++ +||+-+.-=+++-.|
T Consensus 22 v~~~l~~~GfeVi~lg~--~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~ 70 (132)
T TIGR00640 22 IATAYADLGFDVDVGPL--FQTPEEIARQAVEADVHVVGVSSLAGGHLTLV 70 (132)
T ss_pred HHHHHHhCCcEEEECCC--CCCHHHHHHHHHHcCCCEEEEcCchhhhHHHH
Confidence 56678889999986544 4788888888777776 556544443344333
No 96
>PRK03094 hypothetical protein; Provisional
Probab=26.99 E-value=94 Score=25.53 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHcCCEEEEEcCC
Q 013451 278 NENSLVKMAEDIGFQVQVVRPD 299 (442)
Q Consensus 278 Ne~ev~~~l~~~Gf~v~v~~~~ 299 (442)
++..|.+.|++.||+|+-++.+
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred CcHHHHHHHHHCCCEEEecCcc
Confidence 4567899999999999977643
No 97
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=26.45 E-value=1.2e+02 Score=28.09 Aligned_cols=53 Identities=17% Similarity=0.398 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhc-CCEEEeechhh---hhhhhccC
Q 013451 280 NSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNS-SDVMVGVHGAA---MTHFLFMK 332 (442)
Q Consensus 280 ~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~-adVlVGvHGAg---LtN~lFm~ 332 (442)
+++++..+++|++|..+.......+.+....+.. +-|++|.-|+| |.|.|.-.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5788899999999999887645677777766654 66799999998 77877754
No 98
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.41 E-value=1.5e+02 Score=31.42 Aligned_cols=97 Identities=9% Similarity=0.047 Sum_probs=64.0
Q ss_pred CCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhh---hhhhhccCCCcEEE
Q 013451 262 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA---MTHFLFMKPGSVFI 338 (442)
Q Consensus 262 ~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAg---LtN~lFm~pgs~vI 338 (442)
+..|-||.= ...--|..|+.+.|++.|.++...-+. ..+++| ++-+.+|.+-|.+...+ ++..|==+=|.-.+
T Consensus 172 ~~~VNiiG~--~~~~~d~~el~~lL~~~Gi~v~~~~~~-~~t~ee-i~~~~~A~lniv~~~~~~~~~a~~Le~~fGiP~~ 247 (421)
T cd01976 172 PYDVNIIGD--YNIGGDAWASRILLEEMGLRVVAQWSG-DGTLNE-MENAHKAKLNLIHCYRSMNYIARMMEEKYGIPWM 247 (421)
T ss_pred CCeEEEEec--CCCCccHHHHHHHHHHcCCeEEEEeCC-CCCHHH-HHhcccCCEEEEECcHHHHHHHHHHHHHhCCcEE
Confidence 455666652 223457789999999999999864444 456655 56677787766664322 34444333467777
Q ss_pred EEeeCCCCcccccchHhHHhhcCCc
Q 013451 339 QVIPLGTDWAAETYYGEPARKLGLK 363 (442)
Q Consensus 339 EI~P~g~~~~~~~~y~~~A~~~Gl~ 363 (442)
+..|+|++ ....+++.+|+..|..
T Consensus 248 ~~~p~Gi~-~t~~~l~~ia~~~g~~ 271 (421)
T cd01976 248 EYNFFGPT-KIAESLRKIAAYFDDE 271 (421)
T ss_pred ecccCCHH-HHHHHHHHHHHHhCch
Confidence 77789854 2466899999998864
No 99
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=26.17 E-value=1.2e+02 Score=31.90 Aligned_cols=100 Identities=13% Similarity=0.200 Sum_probs=68.1
Q ss_pred CCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCC-----------------CCCCHHHHHHHHhcCCEEEeech-
Q 013451 261 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPD-----------------RTSELAKIYRALNSSDVMVGVHG- 322 (442)
Q Consensus 261 ~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~-----------------~~~s~~eq~~l~~~adVlVGvHG- 322 (442)
.+.+|-+|.-.. -.--|..|+.+.|++.|.++..+-.- ...++ |+++-+.+|.+-|.++-
T Consensus 154 ~~~~VNlig~~~-~~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~-e~i~~~~~A~lniv~~~~ 231 (428)
T cd01965 154 KNGKVNLLPGFP-LTPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTL-EEIRDAGNAKATIALGEY 231 (428)
T ss_pred CCCeEEEECCCC-CCccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcH-HHHHHhccCcEEEEEChh
Confidence 345666665222 11227899999999999999876421 12344 55677889998888877
Q ss_pred hhhhhhhccCC--CcEEEEEe-eCCCCcccccchHhHHhhcCCc
Q 013451 323 AAMTHFLFMKP--GSVFIQVI-PLGTDWAAETYYGEPARKLGLK 363 (442)
Q Consensus 323 AgLtN~lFm~p--gs~vIEI~-P~g~~~~~~~~y~~~A~~~Gl~ 363 (442)
+|..-+-+|.. |.-.+..- |+|++ ....+++.+|+..|..
T Consensus 232 ~~~~~a~~L~e~~GiP~~~~~~p~G~~-~t~~~l~~l~~~~g~~ 274 (428)
T cd01965 232 SGRKAAKALEEKFGVPYILFPTPIGLK-ATDEFLRALSKLSGKP 274 (428)
T ss_pred hhHHHHHHHHHHHCCCeeecCCCcChH-HHHHHHHHHHHHHCCC
Confidence 77766666654 66666665 88854 2356888999988864
No 100
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=26.16 E-value=1.5e+02 Score=31.30 Aligned_cols=94 Identities=18% Similarity=0.302 Sum_probs=59.1
Q ss_pred CCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeec--hhhhhhhhccCCCcEEEE
Q 013451 262 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVH--GAAMTHFLFMKPGSVFIQ 339 (442)
Q Consensus 262 ~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvH--GAgLtN~lFm~pgs~vIE 339 (442)
+.++.++.--. .-+..|+.+.|++.|+++..+-++ .++.| +..+..+-.++..+ +..++..| =+-|.-.+.
T Consensus 166 ~~~VniiG~~~---~~d~~el~~lL~~~Gi~v~~~lp~--~~~~d-~~~~~~~~~~~~~~~~~~~~A~~L-~~~GiP~~~ 238 (427)
T PRK02842 166 HPSLVLVGSLA---DVVEDQLTLEFKKLGIGVVGFLPA--RRFTE-LPAIGPGTVVALAQPFLSDTARAL-RERGAKVLT 238 (427)
T ss_pred CCcEEEEEeCC---cchHHHHHHHHHHcCCeeEEEeCC--ccHHH-HhhcCcCcEEEEeCHHHHHHHHHH-HHcCCcccc
Confidence 34556665432 355688999999999998644354 45544 45554444544444 44555555 555665555
Q ss_pred E-eeCCCCcccccchHhHHhhcCCc
Q 013451 340 V-IPLGTDWAAETYYGEPARKLGLK 363 (442)
Q Consensus 340 I-~P~g~~~~~~~~y~~~A~~~Gl~ 363 (442)
. +|+|++- ...+++.+|+..|+.
T Consensus 239 ~~~P~G~~~-T~~~L~~la~~~g~~ 262 (427)
T PRK02842 239 APFPLGPEG-TRAWLEAAAAAFGID 262 (427)
T ss_pred CCCCcChHH-HHHHHHHHHHHhCcC
Confidence 5 7888542 356899999998864
No 101
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=25.81 E-value=68 Score=29.70 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=45.0
Q ss_pred HHHHHHHHc-CCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhccCCC-cEEEEEeeCC-CCcccccchHhHH
Q 013451 281 SLVKMAEDI-GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPG-SVFIQVIPLG-TDWAAETYYGEPA 357 (442)
Q Consensus 281 ev~~~l~~~-Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgLtN~lFm~pg-s~vIEI~P~g-~~~~~~~~y~~~A 357 (442)
++.+.+++. .-+.++......+++.+..+.+..-+=+||+| +|.||. .-++||+|.. +.-.....-..++
T Consensus 95 ~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~H-------f~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~ 167 (180)
T PF02737_consen 95 ELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMH-------FFNPPHLMPLVEVVPGPKTSPETVDRVRALL 167 (180)
T ss_dssp HHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEE-------E-SSTTT--EEEEEE-TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEe-------cccccccCceEEEeCCCCCCHHHHHHHHHHH
Confidence 566666665 34555555444789999999998888899999 456775 7999999987 3222222344455
Q ss_pred hhcCCc
Q 013451 358 RKLGLK 363 (442)
Q Consensus 358 ~~~Gl~ 363 (442)
+.+|..
T Consensus 168 ~~~gk~ 173 (180)
T PF02737_consen 168 RSLGKT 173 (180)
T ss_dssp HHTT-E
T ss_pred HHCCCE
Confidence 556654
No 102
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=25.73 E-value=1.4e+02 Score=31.74 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=63.8
Q ss_pred CCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechh-h--hhhhhccCCCcEEE
Q 013451 262 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGA-A--MTHFLFMKPGSVFI 338 (442)
Q Consensus 262 ~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGA-g--LtN~lFm~pgs~vI 338 (442)
+.+|-||.= ...--|.+|+.+.|++.|++++..-+. ..+++| ++-+.+|..-|.+.+. + ++..|==+=|.-.+
T Consensus 191 ~~~VNiig~--~~~~~d~~el~~lL~~~Gl~v~~~~~~-~~t~ee-i~~~~~A~lniv~~~~~~~~~A~~L~er~GiP~~ 266 (443)
T TIGR01862 191 EYDVNIIGE--YNIGGDAWVMRIYLEEMGIQVVATFTG-DGTYDE-IRLMHKAKLNLVHCARSANYIANELEERYGIPWM 266 (443)
T ss_pred CCeEEEEcc--CcCcccHHHHHHHHHHcCCeEEEEECC-CCCHHH-HHhcccCCEEEEEChHHHHHHHHHHHHHhCCCeE
Confidence 445666652 223457889999999999999765444 345555 6668888877665542 2 34444323366677
Q ss_pred EEeeCCCCcccccchHhHHhhcCCc
Q 013451 339 QVIPLGTDWAAETYYGEPARKLGLK 363 (442)
Q Consensus 339 EI~P~g~~~~~~~~y~~~A~~~Gl~ 363 (442)
.+-|+|++- ...++..+|+..|+.
T Consensus 267 ~~~p~G~~~-t~~~l~~la~~~gi~ 290 (443)
T TIGR01862 267 KIDFFGFTY-TAESLRAIAAFFGIE 290 (443)
T ss_pred ecccCCHHH-HHHHHHHHHHHhCCc
Confidence 777888542 356899999998853
No 103
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=25.36 E-value=1.4e+02 Score=28.23 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=42.2
Q ss_pred CCCCEEEEEEeCCCccccCHHHHHHHHHHc-CCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhh
Q 013451 260 SKKPKLVILSRNGSRAITNENSLVKMAEDI-GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA 324 (442)
Q Consensus 260 ~~~prv~ii~R~~~R~i~Ne~ev~~~l~~~-Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAg 324 (442)
..++|++||.-...-.=.-...+.++++++ |+++..+... +-++..+.+.+||+++=.=|.-
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~---~~~~~~~~l~~ad~I~l~GG~~ 91 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLF---DTEDPLDALLEADVIYVGGGNT 91 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEecc---CcccHHHHHhcCCEEEECCchH
Confidence 467899999877651112233567788889 9999887643 2344478889999987655543
No 104
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=24.95 E-value=4.7e+02 Score=28.70 Aligned_cols=95 Identities=14% Similarity=0.203 Sum_probs=63.0
Q ss_pred CccccCHHHHHHHHHHcCCEEEEEcCC-CCCCHHH-HH----------HHHhcCCEEEeechhhhhhhhccCCCcEEEEE
Q 013451 273 SRAITNENSLVKMAEDIGFQVQVVRPD-RTSELAK-IY----------RALNSSDVMVGVHGAAMTHFLFMKPGSVFIQV 340 (442)
Q Consensus 273 ~R~i~Ne~ev~~~l~~~Gf~v~v~~~~-~~~s~~e-q~----------~l~~~adVlVGvHGAgLtN~lFm~pgs~vIEI 340 (442)
.||+-=-.+.++.|.+.||+|.+-... ....|.+ .+ ..+..||+++.|.--...-.=+|++|.++|=+
T Consensus 12 E~RVAltP~~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlkV~~P~~~e~~~l~~g~tli~~ 91 (511)
T TIGR00561 12 ECRVAATPKTVQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILKVNAPSDAEIAELPAGKALVSF 91 (511)
T ss_pred CeeeccCHHHHHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEEeCCCCHHHHHhcCCCCEEEEE
Confidence 456655567788888999998775431 1234422 11 22347899999999888888899999999877
Q ss_pred eeCCCCcccccchHhHHhhcCCcEEEEEecc
Q 013451 341 IPLGTDWAAETYYGEPARKLGLKYIGYTILP 371 (442)
Q Consensus 341 ~P~g~~~~~~~~y~~~A~~~Gl~Y~~y~i~~ 371 (442)
+-+. .....-+.....|+..++|+..+
T Consensus 92 l~p~----~n~~ll~~l~~k~it~ia~E~vp 118 (511)
T TIGR00561 92 IWPA----QNPELMEKLAAKNITVLAMDAVP 118 (511)
T ss_pred cCcc----CCHHHHHHHHHcCCEEEEeeccc
Confidence 6432 12233334456778888887543
No 105
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=24.20 E-value=2.7e+02 Score=27.44 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=39.2
Q ss_pred HHHhcCCEEEeechhhhhh--------hhccCCCcEEEEEeeCCCCcccccchHhHHhhcCCcE
Q 013451 309 RALNSSDVMVGVHGAAMTH--------FLFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKY 364 (442)
Q Consensus 309 ~l~~~adVlVGvHGAgLtN--------~lFm~pgs~vIEI~P~g~~~~~~~~y~~~A~~~Gl~Y 364 (442)
..+..+|++|..-.+|+-. .-++++++.|++++-.. ..+.+-..|+..|++.
T Consensus 181 ~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P----~~T~ll~~A~~~G~~~ 240 (278)
T PRK00258 181 EELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGP----LPTPFLAWAKAQGART 240 (278)
T ss_pred hccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCC----CCCHHHHHHHHCcCee
Confidence 4557899999999999843 13568889999997422 2467888899999865
No 106
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=23.75 E-value=86 Score=25.72 Aligned_cols=43 Identities=19% Similarity=0.368 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhcc
Q 013451 278 NENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFM 331 (442)
Q Consensus 278 Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgLtN~lFm 331 (442)
++.+|.++|++.||+|+-++.+. -+..+|.+| +-|-. +|++=|
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~~~---------~~~~~daiV-vtG~~-~n~mg~ 51 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLENEQ---------DLQNVDAIV-VTGQD-TNMMGI 51 (80)
T ss_pred CchHHHHHHHHCCCEEEecCCcc---------ccCCcCEEE-EECCC-cccccc
Confidence 45679999999999999766431 356788877 44432 455443
No 107
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=23.54 E-value=1.3e+02 Score=25.58 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=31.0
Q ss_pred EEEEEeCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEE
Q 013451 265 LVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMV 318 (442)
Q Consensus 265 v~ii~R~~~-R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlV 318 (442)
++|-|+.|+ +++.+ .+.+.+++.|+++.+.+.. ..+..+ +..+|.+|
T Consensus 3 Iiy~S~tGnT~~~A~--~i~~~~~~~g~~v~~~~~~-~~~~~~----l~~~d~ii 50 (140)
T TIGR01753 3 IVYASMTGNTEEMAN--IIAEGLKEAGAEVDLLEVA-DADAED----LLSYDAVL 50 (140)
T ss_pred EEEECCCcHHHHHHH--HHHHHHHhcCCeEEEEEcc-cCCHHH----HhcCCEEE
Confidence 677888776 66654 5667777789999888876 344332 34566543
No 108
>PRK10431 N-acetylmuramoyl-l-alanine amidase II; Provisional
Probab=23.04 E-value=1.6e+02 Score=31.74 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=45.3
Q ss_pred CCCCEEEEEEeCCC------c--cccCHHHH--------HHHHHHc-CCEEEEEcCC-CCCCHHHHHHHHh--cCCEEEe
Q 013451 260 SKKPKLVILSRNGS------R--AITNENSL--------VKMAEDI-GFQVQVVRPD-RTSELAKIYRALN--SSDVMVG 319 (442)
Q Consensus 260 ~~~prv~ii~R~~~------R--~i~Ne~ev--------~~~l~~~-Gf~v~v~~~~-~~~s~~eq~~l~~--~adVlVG 319 (442)
..++.+++|+=.+. . .=+-|.+| .+.|++. |++|+....+ ...++.|-+++.+ .||++|+
T Consensus 188 ~~~~~vIvIDpGHGG~DpGA~g~~G~~EKdv~L~iA~~L~~~L~~~~g~~VvlTR~~D~~v~L~eR~~iAn~~~ADLFIS 267 (445)
T PRK10431 188 TGDKVIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVS 267 (445)
T ss_pred CCCCeEEEEeCCCCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHcCCCEEEE
Confidence 34666777886641 1 22445543 3334444 7998766553 3578999888888 7999999
Q ss_pred echhhhhh
Q 013451 320 VHGAAMTH 327 (442)
Q Consensus 320 vHGAgLtN 327 (442)
+|--+..+
T Consensus 268 IHaNa~~~ 275 (445)
T PRK10431 268 IHADAAPN 275 (445)
T ss_pred EccCCCCC
Confidence 99887664
No 109
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=22.96 E-value=1.4e+02 Score=26.00 Aligned_cols=52 Identities=21% Similarity=0.385 Sum_probs=34.6
Q ss_pred cCHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHH-HHhcCCEEEeechhhhhhh
Q 013451 277 TNENSLVKMAEDIGFQVQVVR--PDRTSELAKIYR-ALNSSDVMVGVHGAAMTHF 328 (442)
Q Consensus 277 ~Ne~ev~~~l~~~Gf~v~v~~--~~~~~s~~eq~~-l~~~adVlVGvHGAgLtN~ 328 (442)
.|..-+.+.+++.|+++.... ++....+.+.++ +..++|++|..=|+|.+.-
T Consensus 18 ~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g~g~~ 72 (135)
T smart00852 18 SNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTGPGPD 72 (135)
T ss_pred CcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCCCCCC
Confidence 455678888999999865332 232234555553 4467999999988885543
No 110
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=22.95 E-value=1.6e+02 Score=31.05 Aligned_cols=74 Identities=16% Similarity=0.307 Sum_probs=45.4
Q ss_pred CCEEEEEEeCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCC-----CCHHHHHHHHhcCCEEE--eechh-------hhh
Q 013451 262 KPKLVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPDRT-----SELAKIYRALNSSDVMV--GVHGA-------AMT 326 (442)
Q Consensus 262 ~prv~ii~R~~~-R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~-----~s~~eq~~l~~~adVlV--GvHGA-------gLt 326 (442)
.-++.||.=.+- + .+++.|+.+|++|...++... ..+.+.-+++.+|||++ .+.-. +|-
T Consensus 116 gktvGIIG~G~IG~------~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li 189 (378)
T PRK15438 116 DRTVGIVGVGNVGR------RLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLA 189 (378)
T ss_pred CCEEEEECcCHHHH------HHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCccccccccc
Confidence 345666654321 2 588889999999998875311 12333456788999998 33211 222
Q ss_pred ---hhhccCCCcEEEEEe
Q 013451 327 ---HFLFMKPGSVFIQVI 341 (442)
Q Consensus 327 ---N~lFm~pgs~vIEI~ 341 (442)
.+-=|+||+.+|-+-
T Consensus 190 ~~~~l~~mk~gailIN~a 207 (378)
T PRK15438 190 DEKLIRSLKPGAILINAC 207 (378)
T ss_pred CHHHHhcCCCCcEEEECC
Confidence 233479999998654
No 111
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=22.87 E-value=3.7e+02 Score=22.23 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=33.1
Q ss_pred EEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHh--cCCE
Q 013451 264 KLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALN--SSDV 316 (442)
Q Consensus 264 rv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~--~adV 316 (442)
|+++..+.....=+...-+...|++.|++|..++.. .+..+-.+.+. +.|+
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~--~~~~~l~~~~~~~~pd~ 54 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN--VPPEELVEALRAERPDV 54 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS--B-HHHHHHHHHHTTCSE
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC--CCHHHHHHHHhcCCCcE
Confidence 556666665555556667888999999999998775 34344333332 5565
No 112
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=22.75 E-value=1.1e+02 Score=27.41 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCE-EEeec
Q 013451 281 SLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDV-MVGVH 321 (442)
Q Consensus 281 ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adV-lVGvH 321 (442)
-+..+|+..||+|+-+-. ..+.++.++...+.|+ +||+-
T Consensus 20 iv~~~l~~~GfeVi~LG~--~v~~e~~v~aa~~~~adiVglS 59 (134)
T TIGR01501 20 ILDHAFTNAGFNVVNLGV--LSPQEEFIKAAIETKADAILVS 59 (134)
T ss_pred HHHHHHHHCCCEEEECCC--CCCHHHHHHHHHHcCCCEEEEe
Confidence 456778999999986544 5899999999888666 56653
No 113
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=22.25 E-value=2e+02 Score=31.32 Aligned_cols=100 Identities=21% Similarity=0.319 Sum_probs=66.8
Q ss_pred CCCEEEEEEeC--CCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhcc--CCCc
Q 013451 261 KKPKLVILSRN--GSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFM--KPGS 335 (442)
Q Consensus 261 ~~prv~ii~R~--~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm--~pgs 335 (442)
.++.|-||.=. +.+.--|..|+.+.|++.|.+|.++-+. ..++++ ++-+.+|++=|.+.+ .|+.-+-+| +=|.
T Consensus 157 ~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~-g~s~~d-l~~l~~A~~NIv~~~~~g~~~A~~Le~~fGi 234 (511)
T TIGR01278 157 EKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPW-GASIAD-LARLPAAWLNICPYREIGLMAAEYLKEKFGQ 234 (511)
T ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC-CCCHHH-HHhcccCcEEEEechHHHHHHHHHHHHHhCC
Confidence 45677777533 2244567789999999999999887664 456665 555688888777654 555444444 3344
Q ss_pred EEEEEeeCCCCcccccchHhHHhhc---CCc
Q 013451 336 VFIQVIPLGTDWAAETYYGEPARKL---GLK 363 (442)
Q Consensus 336 ~vIEI~P~g~~~~~~~~y~~~A~~~---Gl~ 363 (442)
-.+...|.|++- ...+...+++.. |+.
T Consensus 235 P~i~~~PiG~~~-T~~fL~~l~~~~~~~g~~ 264 (511)
T TIGR01278 235 PYITTTPIGVNA-TRRFIREIAALLNQAGAD 264 (511)
T ss_pred CcccccccCHHH-HHHHHHHHHHHHhhcCCC
Confidence 445568999542 356788888887 754
No 114
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=21.83 E-value=3.3e+02 Score=29.87 Aligned_cols=94 Identities=14% Similarity=0.234 Sum_probs=63.4
Q ss_pred CccccCHHHHHHHHHHcCCEEEEEcCC-CCCCHHH-H-----------HHHHhcCCEEEeechhhhhhhhccCCCcEEEE
Q 013451 273 SRAITNENSLVKMAEDIGFQVQVVRPD-RTSELAK-I-----------YRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQ 339 (442)
Q Consensus 273 ~R~i~Ne~ev~~~l~~~Gf~v~v~~~~-~~~s~~e-q-----------~~l~~~adVlVGvHGAgLtN~lFm~pgs~vIE 339 (442)
.||+-=-.+.++.|.+.||+|.+-... ....|.+ . .+++ +||+++.+..-.....=+|++|.++|=
T Consensus 13 E~RValtP~~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~-~~diilkV~~P~~~e~~~l~~g~~li~ 91 (509)
T PRK09424 13 ETRVAATPKTVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVW-QSDIILKVNAPSDDEIALLREGATLVS 91 (509)
T ss_pred CeEeccCHHHHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccc-cCCEEEEeCCCCHHHHHhcCCCCEEEE
Confidence 455555567777788899998875431 1233322 1 1345 699999999998888889999999988
Q ss_pred EeeCCCCcccccchHhHHhhcCCcEEEEEecc
Q 013451 340 VIPLGTDWAAETYYGEPARKLGLKYIGYTILP 371 (442)
Q Consensus 340 I~P~g~~~~~~~~y~~~A~~~Gl~Y~~y~i~~ 371 (442)
.+-+. .....-+.....|+.-++|+..+
T Consensus 92 ~l~p~----~~~~l~~~l~~~~it~ia~e~vp 119 (509)
T PRK09424 92 FIWPA----QNPELLEKLAARGVTVLAMDAVP 119 (509)
T ss_pred EeCcc----cCHHHHHHHHHcCCEEEEeeccc
Confidence 76332 12233344456788888887654
No 115
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=21.60 E-value=2.1e+02 Score=26.29 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEee
Q 013451 279 ENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGV 320 (442)
Q Consensus 279 e~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGv 320 (442)
..++.+.+++.|++|.++.. .++..++-.=..-+.+|||
T Consensus 75 Ig~l~~lae~~g~~v~i~~G---gt~ar~~ik~~~p~~iigV 113 (158)
T PF01976_consen 75 IGDLKKLAEKYGYKVYIATG---GTLARKIIKEYRPKAIIGV 113 (158)
T ss_pred hhHHHHHHHHcCCEEEEEcC---hHHHHHHHHHhCCCEEEEE
Confidence 45899999999999988864 4666555444555555554
No 116
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=21.57 E-value=1.7e+02 Score=31.13 Aligned_cols=96 Identities=9% Similarity=0.051 Sum_probs=63.6
Q ss_pred CCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-h--hhhhhhccCCCcEEE
Q 013451 262 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-A--AMTHFLFMKPGSVFI 338 (442)
Q Consensus 262 ~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-A--gLtN~lFm~pgs~vI 338 (442)
+..|-+|.-.. ..-+..|+.+.|++.|+++...-+. ..++ ++++-+.+|.+-|.+.+ + .++..|==+=|.-.+
T Consensus 197 ~~~VNiiG~~~--~~~d~~el~~lL~~~Gl~v~~~~~~-~~s~-eei~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~ 272 (456)
T TIGR01283 197 VHDINLIGEFN--VAGEFWHVKPLLEKLGIRVLATITG-DSRY-AEVQTAHRAKLNMVQCSKSMINLARKMEEKYGIPYF 272 (456)
T ss_pred CCcEEEEcCCC--CcccHHHHHHHHHHcCCeEEEEeCC-CCcH-HHHHhcccCcEEEEECHhHHHHHHHHHHHHcCCCEE
Confidence 45666776322 2346679999999999999875554 3556 45677888888776543 3 344444334466677
Q ss_pred EEeeCCCCcccccchHhHHhhcCC
Q 013451 339 QVIPLGTDWAAETYYGEPARKLGL 362 (442)
Q Consensus 339 EI~P~g~~~~~~~~y~~~A~~~Gl 362 (442)
+..|+|++. ...+++.+|+.+|.
T Consensus 273 ~~~~~G~~~-T~~~L~~Ia~~lg~ 295 (456)
T TIGR01283 273 EGSFYGIED-TSKALRDIADLFGD 295 (456)
T ss_pred ecCCCcHHH-HHHHHHHHHHHhCC
Confidence 777888543 35688999999884
No 117
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=21.24 E-value=2.9e+02 Score=30.25 Aligned_cols=62 Identities=18% Similarity=0.290 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCEEEEEcCCCC----------C--CH-HHHHHHH----hcCCEEEeechh-------hhhhhhc--cCC
Q 013451 280 NSLVKMAEDIGFQVQVVRPDRT----------S--EL-AKIYRAL----NSSDVMVGVHGA-------AMTHFLF--MKP 333 (442)
Q Consensus 280 ~ev~~~l~~~Gf~v~v~~~~~~----------~--s~-~eq~~l~----~~adVlVGvHGA-------gLtN~lF--m~p 333 (442)
++-.+.+++.|.+...++.... + .+ +.|.+++ ..+||+|...|. .++..++ |+|
T Consensus 198 ~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkp 277 (509)
T PRK09424 198 PEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKP 277 (509)
T ss_pred HHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCC
Confidence 4567778888988655544211 1 22 2233433 569999999986 2244444 899
Q ss_pred CcEEEEEe
Q 013451 334 GSVFIQVI 341 (442)
Q Consensus 334 gs~vIEI~ 341 (442)
|++++.+-
T Consensus 278 GgvIVdvg 285 (509)
T PRK09424 278 GSVIVDLA 285 (509)
T ss_pred CCEEEEEc
Confidence 99999885
No 118
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=21.08 E-value=1.5e+02 Score=25.88 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=35.9
Q ss_pred ccCHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHHH-HhcCCEEEeechhhhhh
Q 013451 276 ITNENSLVKMAEDIGFQVQVVR--PDRTSELAKIYRA-LNSSDVMVGVHGAAMTH 327 (442)
Q Consensus 276 i~Ne~ev~~~l~~~Gf~v~v~~--~~~~~s~~eq~~l-~~~adVlVGvHGAgLtN 327 (442)
=.|-.-+.+.+++.|+++.... ++....+.++++. ..++|++|.-=|.|.+-
T Consensus 18 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g~ 72 (133)
T cd00758 18 DTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVGR 72 (133)
T ss_pred EchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCCC
Confidence 3455667888999999886543 2222456677654 46699999998888653
No 119
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=21.02 E-value=1.3e+02 Score=30.20 Aligned_cols=40 Identities=13% Similarity=0.306 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHhcCCEEEeechhhhhhhhccCCCcEEEEEee
Q 013451 301 TSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIP 342 (442)
Q Consensus 301 ~~s~~eq~~l~~~adVlVGvHGAgLtN~lFm~pgs~vIEI~P 342 (442)
.+++.|-+++++.||++||. =+|..|+.-.- |+-+|-|+.
T Consensus 248 ~~sL~el~ali~~a~l~Vs~-DSGp~HlAaA~-g~p~v~Lfg 287 (344)
T TIGR02201 248 KLTLPQLAALIDHARLFIGV-DSVPMHMAAAL-GTPLVALFG 287 (344)
T ss_pred CCCHHHHHHHHHhCCEEEec-CCHHHHHHHHc-CCCEEEEEC
Confidence 36899999999999999998 56666665432 344444553
No 120
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=20.91 E-value=1.8e+02 Score=28.71 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhccCCCcEEEEEeeCC
Q 013451 279 ENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLG 344 (442)
Q Consensus 279 e~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgLtN~lFm~pgs~vIEI~P~g 344 (442)
..+++..|++.||+|+... ..+..||..+=.+-+ +-| ..|.-.++.+|.+ |.|
T Consensus 28 A~pv~~el~d~G~~Vi~~S---SKT~aE~~~l~~~l~----v~~-----~p~iaEnG~aI~~-p~~ 80 (274)
T COG3769 28 AAPVLLELKDAGVPVILCS---SKTRAEMLYLQKSLG----VQG-----LPLIAENGAAIYL-PKG 80 (274)
T ss_pred cchHHHHHHHcCCeEEEec---cchHHHHHHHHHhcC----CCC-----CceeecCCceEEe-ccc
Confidence 3478899999999999766 468999988877643 333 4455555555544 554
No 121
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=20.81 E-value=1.8e+02 Score=30.50 Aligned_cols=73 Identities=21% Similarity=0.381 Sum_probs=44.2
Q ss_pred CEEEEEEeCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCC-----CCHHHHHHHHhcCCEEEee--------c-hhhhh-
Q 013451 263 PKLVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPDRT-----SELAKIYRALNSSDVMVGV--------H-GAAMT- 326 (442)
Q Consensus 263 prv~ii~R~~~-R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~-----~s~~eq~~l~~~adVlVGv--------H-GAgLt- 326 (442)
-++.||.-.+- | ++++.++.+|++|...++... ..+..--+++..||+++-- | --+|-
T Consensus 117 ktvGIIG~G~IG~------~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~ 190 (381)
T PRK00257 117 RTYGVVGAGHVGG------RLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLD 190 (381)
T ss_pred CEEEEECCCHHHH------HHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCC
Confidence 45666664421 2 578889999999998876311 1223334567899998721 1 11222
Q ss_pred --hhhccCCCcEEEEEe
Q 013451 327 --HFLFMKPGSVFIQVI 341 (442)
Q Consensus 327 --N~lFm~pgs~vIEI~ 341 (442)
.+--|+||+.+|-+-
T Consensus 191 ~~~l~~mk~gailIN~a 207 (381)
T PRK00257 191 EAFLASLRPGAWLINAS 207 (381)
T ss_pred HHHHhcCCCCeEEEECC
Confidence 344489999888654
No 122
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=20.47 E-value=2.5e+02 Score=28.26 Aligned_cols=87 Identities=18% Similarity=0.262 Sum_probs=55.8
Q ss_pred CCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhhhhh--------hccCC
Q 013451 262 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHF--------LFMKP 333 (442)
Q Consensus 262 ~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgLtN~--------lFm~p 333 (442)
..+++++.|+..| .+++.+.+.+.|..+...... ...-.+ .+|++|-.-..||..- --+++
T Consensus 150 ~~~i~V~NRt~~r----a~~La~~~~~~~~~~~~~~~~-~~~~~~------~~dliINaTp~Gm~~~~~~~~~~~~~l~~ 218 (283)
T COG0169 150 AKRITVVNRTRER----AEELADLFGELGAAVEAAALA-DLEGLE------EADLLINATPVGMAGPEGDSPVPAELLPK 218 (283)
T ss_pred CCEEEEEeCCHHH----HHHHHHHhhhccccccccccc-cccccc------ccCEEEECCCCCCCCCCCCCCCcHHhcCc
Confidence 3577777776544 456777777666533333322 111111 7999998877777763 34678
Q ss_pred CcEEEEEeeCCCCcccccchHhHHhhcCCc
Q 013451 334 GSVFIQVIPLGTDWAAETYYGEPARKLGLK 363 (442)
Q Consensus 334 gs~vIEI~P~g~~~~~~~~y~~~A~~~Gl~ 363 (442)
++++.+++=.- .++.|-..|+..|.+
T Consensus 219 ~~~v~D~vY~P----~~TplL~~A~~~G~~ 244 (283)
T COG0169 219 GAIVYDVVYNP----LETPLLREARAQGAK 244 (283)
T ss_pred CCEEEEeccCC----CCCHHHHHHHHcCCe
Confidence 89999998322 256788889998877
No 123
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=20.26 E-value=1.5e+02 Score=30.08 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=42.8
Q ss_pred CEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhh----hhhhccCCCcEEE
Q 013451 263 PKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAM----THFLFMKPGSVFI 338 (442)
Q Consensus 263 prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgL----tN~lFm~pgs~vI 338 (442)
-++.+.+|+. .+.+++++.+++.|++++.++ +. -+.+.+|||++..-.+.- -..=|++||+.|+
T Consensus 154 ~~v~v~~r~~----~~~~~~~~~~~~~~~~v~~~~-----~~---~~av~~aDii~taT~s~~~~P~~~~~~l~~g~hi~ 221 (313)
T PF02423_consen 154 KEVRVYSRSP----ERAEAFAARLRDLGVPVVAVD-----SA---EEAVRGADIIVTATPSTTPAPVFDAEWLKPGTHIN 221 (313)
T ss_dssp SEEEEE-SSH----HHHHHHHHHHHCCCTCEEEES-----SH---HHHHTTSSEEEE----SSEEESB-GGGS-TT-EEE
T ss_pred eEEEEEccCh----hHHHHHHHhhccccccceecc-----ch---hhhcccCCEEEEccCCCCCCccccHHHcCCCcEEE
Confidence 3566777653 445678888888888888764 22 256899999999988876 5666899999987
Q ss_pred EEeeCC
Q 013451 339 QVIPLG 344 (442)
Q Consensus 339 EI~P~g 344 (442)
-|=.+.
T Consensus 222 ~iGs~~ 227 (313)
T PF02423_consen 222 AIGSYT 227 (313)
T ss_dssp E-S-SS
T ss_pred EecCCC
Confidence 665543
No 124
>PRK07308 flavodoxin; Validated
Probab=20.14 E-value=1.6e+02 Score=25.88 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=27.1
Q ss_pred CCEEEEEEeCCC-ccccCHHHHHHHHHHcCCEEEEEcCC
Q 013451 262 KPKLVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPD 299 (442)
Q Consensus 262 ~prv~ii~R~~~-R~i~Ne~ev~~~l~~~Gf~v~v~~~~ 299 (442)
+..|+|-|+.|+ +++.+ .+.+.+++.|.++.+.+..
T Consensus 3 ~~~IvY~S~tGnTe~iA~--~ia~~l~~~g~~~~~~~~~ 39 (146)
T PRK07308 3 LAKIVYASMTGNTEEIAD--IVADKLRELGHDVDVDECT 39 (146)
T ss_pred eEEEEEECCCchHHHHHH--HHHHHHHhCCCceEEEecc
Confidence 467889998886 77765 4667777889888877655
No 125
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=20.09 E-value=2e+02 Score=29.69 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCEEEEEc-CCCCCC---HHHHHHHHh-----cCCEEEeech
Q 013451 280 NSLVKMAEDIGFQVQVVR-PDRTSE---LAKIYRALN-----SSDVMVGVHG 322 (442)
Q Consensus 280 ~ev~~~l~~~Gf~v~v~~-~~~~~s---~~eq~~l~~-----~adVlVGvHG 322 (442)
+.+.+.|++.|.++.+.+ ...+-+ +.+-+++++ ++|++||+=|
T Consensus 39 ~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGG 90 (347)
T cd08184 39 KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGG 90 (347)
T ss_pred hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCC
Confidence 688899998888766653 211222 445556665 7899999988
No 126
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=20.01 E-value=4.3e+02 Score=26.08 Aligned_cols=79 Identities=20% Similarity=0.287 Sum_probs=46.8
Q ss_pred CCCEEEEEEeCC--Ccccc--CHHHHHHHHHHcCCEEEEE-cCC-------------------CCCCHHHHHHHHhcCCE
Q 013451 261 KKPKLVILSRNG--SRAIT--NENSLVKMAEDIGFQVQVV-RPD-------------------RTSELAKIYRALNSSDV 316 (442)
Q Consensus 261 ~~prv~ii~R~~--~R~i~--Ne~ev~~~l~~~Gf~v~v~-~~~-------------------~~~s~~eq~~l~~~adV 316 (442)
.+|.+++.--.+ .|++- +-.++++.+.+.|+.++++ ... ..+++.|-+++++.||+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~ali~~a~l 257 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAALLAGADA 257 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHHHHHcCCE
Confidence 356655544321 26665 4447777776668877665 210 13589999999999999
Q ss_pred EEeechhhhhhhhccCCCcEEEEEe
Q 013451 317 MVGVHGAAMTHFLFMKPGSVFIQVI 341 (442)
Q Consensus 317 lVGvHGAgLtN~lFm~pgs~vIEI~ 341 (442)
+||.=.+ ..|+.=+- |+-+|-|+
T Consensus 258 ~I~~DSg-p~HlAaa~-g~P~i~lf 280 (319)
T TIGR02193 258 VVGVDTG-LTHLAAAL-DKPTVTLY 280 (319)
T ss_pred EEeCCCh-HHHHHHHc-CCCEEEEE
Confidence 9997543 33332221 44455555
No 127
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=20.01 E-value=1.8e+02 Score=30.36 Aligned_cols=57 Identities=12% Similarity=0.182 Sum_probs=41.4
Q ss_pred CCCCCEEEEEEeCCC-ccccCHHHHHHHHH--HcCCEEEEEcCCCCCCHHHHHHHHhcCCEEE
Q 013451 259 QSKKPKLVILSRNGS-RAITNENSLVKMAE--DIGFQVQVVRPDRTSELAKIYRALNSSDVMV 318 (442)
Q Consensus 259 ~~~~prv~ii~R~~~-R~i~Ne~ev~~~l~--~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlV 318 (442)
..++.-|+|.|..|+ +.+.+ .+++.++ +.|.+|.+.+.. ..+..+.+..+.+||.+|
T Consensus 246 ~~~kv~IvY~S~~GnTe~mA~--~ia~g~~~~~~g~~v~~~~~~-~~~~~~i~~~~~~~d~ii 305 (394)
T PRK11921 246 QENQVTILYDTMWNSTRRMAE--AIAEGIKKANKDVTVKLYNSA-KSDKNDIITEVFKSKAIL 305 (394)
T ss_pred CcCcEEEEEECCchHHHHHHH--HHHHHHhhcCCCCeEEEEECC-CCCHHHHHHHHHhCCEEE
Confidence 346788889999886 65543 4566666 568899888876 567788777777777754
Done!