Query 013451
Match_columns 442
No_of_seqs 272 out of 669
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:49:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a5o_A Bifunctional protein fo 82.9 2.8 9.5E-05 40.9 7.6 71 261-341 160-233 (286)
2 3ngx_A Bifunctional protein fo 81.0 3.4 0.00012 40.1 7.4 72 260-341 148-222 (276)
3 3p2o_A Bifunctional protein fo 80.7 3.9 0.00013 39.8 7.7 71 261-341 159-232 (285)
4 3l07_A Bifunctional protein fo 80.1 4.2 0.00014 39.6 7.7 71 261-341 160-233 (285)
5 4a26_A Putative C-1-tetrahydro 77.9 4.2 0.00015 39.9 7.0 73 261-341 164-239 (300)
6 1a4i_A Methylenetetrahydrofola 75.2 7 0.00024 38.3 7.7 74 260-341 163-237 (301)
7 3czx_A Putative N-acetylmuramo 73.6 4.6 0.00016 36.4 5.6 47 281-327 36-84 (182)
8 3tnl_A Shikimate dehydrogenase 73.5 17 0.00058 35.6 10.1 94 263-364 179-282 (315)
9 1b0a_A Protein (fold bifunctio 70.1 9.2 0.00031 37.3 7.1 74 260-341 157-231 (288)
10 4b4u_A Bifunctional protein fo 69.1 12 0.00043 36.6 7.9 71 260-340 177-250 (303)
11 2c2x_A Methylenetetrahydrofola 58.9 19 0.00064 34.9 6.9 73 261-341 157-232 (281)
12 3qay_A Endolysin; amidase A/B 57.0 16 0.00055 32.7 5.7 44 282-325 38-89 (180)
13 1jwq_A N-acetylmuramoyl-L-alan 56.7 15 0.00051 32.9 5.5 47 281-327 36-86 (179)
14 2q62_A ARSH; alpha/beta, flavo 55.5 24 0.00081 33.2 6.9 57 261-319 33-104 (247)
15 3t4e_A Quinate/shikimate dehyd 55.4 56 0.0019 31.8 9.8 93 264-364 174-276 (312)
16 3fni_A Putative diflavin flavo 55.3 11 0.00039 32.6 4.3 55 261-318 5-61 (159)
17 2zuv_A Lacto-N-biose phosphory 54.5 8.3 0.00028 41.9 3.8 116 262-390 438-592 (759)
18 2amj_A Modulator of drug activ 52.6 23 0.0008 31.9 6.2 39 281-319 38-76 (204)
19 1edz_A 5,10-methylenetetrahydr 51.9 29 0.00098 34.2 7.0 78 260-341 175-275 (320)
20 2fzv_A Putative arsenical resi 51.9 32 0.0011 33.1 7.2 58 260-319 56-129 (279)
21 3gvx_A Glycerate dehydrogenase 50.8 58 0.002 31.3 9.0 133 281-440 136-287 (290)
22 3ne8_A N-acetylmuramoyl-L-alan 50.4 20 0.0007 33.5 5.5 46 282-327 39-88 (234)
23 3rpe_A MDAB, modulator of drug 46.5 22 0.00076 32.9 5.0 39 281-319 51-89 (218)
24 3don_A Shikimate dehydrogenase 46.2 37 0.0013 32.4 6.7 92 263-364 118-229 (277)
25 3hly_A Flavodoxin-like domain; 45.5 21 0.00071 30.8 4.5 52 264-318 4-56 (161)
26 3l4e_A Uncharacterized peptida 44.3 50 0.0017 30.1 7.0 64 262-326 27-92 (206)
27 1xov_A PLY protein, plypsa; al 42.0 16 0.00056 36.0 3.5 43 282-324 46-94 (326)
28 3jyo_A Quinate/shikimate dehyd 37.7 73 0.0025 30.3 7.3 87 264-364 153-248 (283)
29 3s40_A Diacylglycerol kinase; 37.6 1.7E+02 0.0058 27.7 10.0 66 279-344 28-98 (304)
30 1wwk_A Phosphoglycerate dehydr 37.3 2.2E+02 0.0074 27.2 10.7 132 281-434 156-306 (307)
31 1i1q_B Anthranilate synthase c 34.9 34 0.0012 30.2 4.2 52 263-320 1-55 (192)
32 4dio_A NAD(P) transhydrogenase 34.5 62 0.0021 32.8 6.5 35 307-341 269-312 (405)
33 2egg_A AROE, shikimate 5-dehyd 33.9 91 0.0031 29.7 7.4 56 306-365 197-260 (297)
34 1mkz_A Molybdenum cofactor bio 31.0 87 0.003 27.5 6.2 69 259-327 7-83 (172)
35 3evt_A Phosphoglycerate dehydr 30.2 3E+02 0.01 26.6 10.5 131 281-433 151-300 (324)
36 3p2y_A Alanine dehydrogenase/p 29.0 65 0.0022 32.4 5.5 34 308-341 260-302 (381)
37 3gvp_A Adenosylhomocysteinase 28.5 54 0.0019 33.6 4.9 70 263-341 221-307 (435)
38 2gt1_A Lipopolysaccharide hept 28.4 1.7E+02 0.0057 27.4 8.2 81 261-343 177-281 (326)
39 2fz5_A Flavodoxin; alpha/beta 28.2 58 0.002 26.3 4.3 47 265-318 4-51 (137)
40 3tov_A Glycosyl transferase fa 27.9 3.1E+02 0.011 26.3 10.2 80 261-342 184-288 (349)
41 2rir_A Dipicolinate synthase, 27.1 79 0.0027 29.9 5.6 80 281-365 171-265 (300)
42 1psw_A ADP-heptose LPS heptosy 26.6 2.6E+02 0.0091 26.0 9.3 69 274-344 195-290 (348)
43 3fbt_A Chorismate mutase and s 26.2 2.9E+02 0.01 26.1 9.4 91 262-364 122-233 (282)
44 2f9f_A First mannosyl transfer 26.1 2.4E+02 0.0082 23.6 8.1 39 258-298 19-58 (177)
45 3rht_A (gatase1)-like protein; 26.0 33 0.0011 32.6 2.6 72 263-341 5-86 (259)
46 1nw9_B Caspase 9, apoptosis-re 25.9 46 0.0016 31.7 3.6 25 278-305 47-71 (277)
47 3u7q_A Nitrogenase molybdenum- 25.8 94 0.0032 32.1 6.2 98 260-362 218-318 (492)
48 3o8q_A Shikimate 5-dehydrogena 25.6 43 0.0015 32.0 3.4 48 312-363 186-239 (281)
49 2yxb_A Coenzyme B12-dependent 25.6 1.7E+02 0.0059 25.2 7.1 57 259-317 15-73 (161)
50 2ohh_A Type A flavoprotein FPR 25.3 65 0.0022 31.4 4.7 53 263-318 259-312 (404)
51 1l9x_A Gamma-glutamyl hydrolas 25.2 1.3E+02 0.0043 29.1 6.7 61 260-322 28-95 (315)
52 3pzy_A MOG; ssgcid, seattle st 25.0 51 0.0018 28.8 3.5 67 260-327 5-80 (164)
53 2eez_A Alanine dehydrogenase; 24.9 1.6E+02 0.0053 28.8 7.4 91 274-370 14-118 (369)
54 3pwz_A Shikimate dehydrogenase 24.8 1.6E+02 0.0054 27.8 7.2 48 312-363 180-233 (272)
55 1qtn_A Caspase-8; apoptosis, d 23.8 83 0.0028 27.7 4.6 51 279-334 57-118 (164)
56 2pjk_A 178AA long hypothetical 23.8 1.3E+02 0.0046 26.5 6.1 69 259-327 12-95 (178)
57 2dko_A Caspase-3; low barrier 23.5 61 0.0021 27.9 3.6 51 279-334 43-104 (146)
58 2fi0_A Conserved domain protei 23.3 54 0.0018 25.3 2.9 21 274-294 58-78 (81)
59 3h11_A CAsp8 and FADD-like apo 22.8 91 0.0031 29.7 5.0 66 261-335 42-119 (272)
60 2j32_A Caspase-3; Pro-caspase3 22.0 80 0.0027 29.5 4.4 52 278-334 42-104 (250)
61 2f62_A Nucleoside 2-deoxyribos 21.6 1.2E+02 0.0043 26.4 5.3 39 280-320 30-74 (161)
62 2q9u_A A-type flavoprotein; fl 21.2 71 0.0024 31.4 4.0 52 264-318 260-312 (414)
63 2ql9_A Caspase-7; cysteine pro 21.1 71 0.0024 28.5 3.6 52 278-334 70-132 (173)
64 1e5d_A Rubredoxin\:oxygen oxid 20.8 93 0.0032 30.2 4.8 59 263-324 253-317 (402)
65 2qv7_A Diacylglycerol kinase D 20.7 3.8E+02 0.013 25.5 9.2 81 264-344 26-115 (337)
66 2d5c_A AROE, shikimate 5-dehyd 20.5 1.9E+02 0.0065 26.5 6.7 91 264-365 118-226 (263)
67 1m72_A Caspase-1; caspase, cys 20.4 77 0.0026 30.1 4.0 51 279-334 58-119 (272)
68 1y5e_A Molybdenum cofactor bio 20.3 1.5E+02 0.0051 25.7 5.6 68 260-327 11-86 (169)
69 3kbq_A Protein TA0487; structu 20.1 90 0.0031 27.7 4.1 70 262-331 3-80 (172)
No 1
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=82.94 E-value=2.8 Score=40.90 Aligned_cols=71 Identities=21% Similarity=0.228 Sum_probs=54.8
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAg-LtN~lFm~pgs~v 337 (442)
..-++++|.|.+. | -+..+|...|.+|.+..-. +.++.+ .+++|||+|+.-|+. +-..=|.+||++|
T Consensus 160 ~Gk~vvVvGrs~iVG~------plA~lL~~~gAtVtv~hs~-T~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavV 229 (286)
T 4a5o_A 160 YGMDAVVVGASNIVGR------PMALELLLGGCTVTVTHRF-TRDLAD---HVSRADLVVVAAGKPGLVKGEWIKEGAIV 229 (286)
T ss_dssp TTCEEEEECTTSTTHH------HHHHHHHHTTCEEEEECTT-CSCHHH---HHHTCSEEEECCCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCchhHH------HHHHHHHHCCCeEEEEeCC-CcCHHH---HhccCCEEEECCCCCCCCCHHHcCCCeEE
Confidence 4558899999863 4 4667788889999988643 456654 578999999998875 6666678999999
Q ss_pred EEEe
Q 013451 338 IQVI 341 (442)
Q Consensus 338 IEI~ 341 (442)
|-+-
T Consensus 230 IDvg 233 (286)
T 4a5o_A 230 IDVG 233 (286)
T ss_dssp EECC
T ss_pred EEec
Confidence 9874
No 2
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=81.04 E-value=3.4 Score=40.06 Aligned_cols=72 Identities=25% Similarity=0.349 Sum_probs=54.8
Q ss_pred CCCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcE
Q 013451 260 SKKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSV 336 (442)
Q Consensus 260 ~~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAg-LtN~lFm~pgs~ 336 (442)
-..-++++|.|.+. | -+...|.+.|.+|.+..-. +.++.+ .+++|||+|+.-|+. +-..=|.+||++
T Consensus 148 l~Gk~vvVvG~s~iVG~------plA~lL~~~gAtVtv~~~~-t~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~Gav 217 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGR------PLSMMLLNRNYTVSVCHSK-TKDIGS---MTRSSKIVVVAVGRPGFLNREMVTPGSV 217 (276)
T ss_dssp CCSCEEEEECCCTTTHH------HHHHHHHHTTCEEEEECTT-CSCHHH---HHHHSSEEEECSSCTTCBCGGGCCTTCE
T ss_pred cCCCEEEEEcCChHHHH------HHHHHHHHCCCeEEEEeCC-cccHHH---hhccCCEEEECCCCCccccHhhccCCcE
Confidence 34568899999863 3 4667778889999988654 456665 578999999998874 666667899999
Q ss_pred EEEEe
Q 013451 337 FIQVI 341 (442)
Q Consensus 337 vIEI~ 341 (442)
||-+-
T Consensus 218 VIDvg 222 (276)
T 3ngx_A 218 VIDVG 222 (276)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99874
No 3
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=80.65 E-value=3.9 Score=39.83 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=54.6
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAg-LtN~lFm~pgs~v 337 (442)
..-++++|.|.+. | -+...|...|.+|.+..-. +.++.+ .+++|||+|+.-|+. +-..=|++||++|
T Consensus 159 ~Gk~vvVvGrs~iVG~------p~A~lL~~~gAtVtv~h~~-t~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavV 228 (285)
T 3p2o_A 159 EGKDAVIIGASNIVGR------PMATMLLNAGATVSVCHIK-TKDLSL---YTRQADLIIVAAGCVNLLRSDMVKEGVIV 228 (285)
T ss_dssp TTCEEEEECCCTTTHH------HHHHHHHHTTCEEEEECTT-CSCHHH---HHTTCSEEEECSSCTTCBCGGGSCTTEEE
T ss_pred CCCEEEEECCCchHHH------HHHHHHHHCCCeEEEEeCC-chhHHH---HhhcCCEEEECCCCCCcCCHHHcCCCeEE
Confidence 4568899999863 4 4667788889999988654 455554 588999999988865 6666678999999
Q ss_pred EEEe
Q 013451 338 IQVI 341 (442)
Q Consensus 338 IEI~ 341 (442)
|-+-
T Consensus 229 IDVg 232 (285)
T 3p2o_A 229 VDVG 232 (285)
T ss_dssp EECC
T ss_pred EEec
Confidence 9874
No 4
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=80.13 E-value=4.2 Score=39.60 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=53.8
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAg-LtN~lFm~pgs~v 337 (442)
..-++++|.|.+. | -+..+|...|.+|.+..-. +.++.+ .+++|||+|+.-|+. +-..=|++||++|
T Consensus 160 ~Gk~vvVIG~s~iVG~------p~A~lL~~~gAtVtv~hs~-t~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavV 229 (285)
T 3l07_A 160 EGAYAVVVGASNVVGK------PVSQLLLNAKATVTTCHRF-TTDLKS---HTTKADILIVAVGKPNFITADMVKEGAVV 229 (285)
T ss_dssp TTCEEEEECCCTTTHH------HHHHHHHHTTCEEEEECTT-CSSHHH---HHTTCSEEEECCCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCchhHH------HHHHHHHHCCCeEEEEeCC-chhHHH---hcccCCEEEECCCCCCCCCHHHcCCCcEE
Confidence 4568899998863 4 4667788889999887643 455654 588999999988865 5555678999999
Q ss_pred EEEe
Q 013451 338 IQVI 341 (442)
Q Consensus 338 IEI~ 341 (442)
|.+-
T Consensus 230 IDvg 233 (285)
T 3l07_A 230 IDVG 233 (285)
T ss_dssp EECC
T ss_pred EEec
Confidence 9874
No 5
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=77.93 E-value=4.2 Score=39.86 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=53.9
Q ss_pred CCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAg-LtN~lFm~pgs~v 337 (442)
..-++++|.|.+. | -+...|.+.|.+|.+..-. +.++. ..+.+++|||+|+.-|.. +-..=|++||++|
T Consensus 164 ~Gk~vvVIG~s~iVG~------p~A~lL~~~gAtVtv~~~~-T~~l~-l~~~~~~ADIVI~Avg~p~~I~~~~vk~GavV 235 (300)
T 4a26_A 164 AGKRAVVLGRSNIVGA------PVAALLMKENATVTIVHSG-TSTED-MIDYLRTADIVIAAMGQPGYVKGEWIKEGAAV 235 (300)
T ss_dssp TTCEEEEECCCTTTHH------HHHHHHHHTTCEEEEECTT-SCHHH-HHHHHHTCSEEEECSCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCchHHH------HHHHHHHHCCCeEEEEeCC-CCCch-hhhhhccCCEEEECCCCCCCCcHHhcCCCcEE
Confidence 4568899998863 4 4667778889999987642 33333 015789999999988875 5566678999999
Q ss_pred EEEe
Q 013451 338 IQVI 341 (442)
Q Consensus 338 IEI~ 341 (442)
|-+-
T Consensus 236 IDvg 239 (300)
T 4a26_A 236 VDVG 239 (300)
T ss_dssp EECC
T ss_pred EEEe
Confidence 9874
No 6
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=75.20 E-value=7 Score=38.33 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=53.5
Q ss_pred CCCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEEE
Q 013451 260 SKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVFI 338 (442)
Q Consensus 260 ~~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAg-LtN~lFm~pgs~vI 338 (442)
-..-++++|.|.+. +- .-+...|...|.+|.+.... +.++. +.+++|||+|+.-|.. +-..=|.+||++||
T Consensus 163 l~gk~vvVIG~s~i---VG-~p~A~lL~~~gAtVtv~hs~-t~~L~---~~~~~ADIVI~Avg~p~~I~~~~vk~GavVI 234 (301)
T 1a4i_A 163 IAGRHAVVVGRSKI---VG-APMHDLLLWNNATVTTCHSK-TAHLD---EEVNKGDILVVATGQPEMVKGEWIKPGAIVI 234 (301)
T ss_dssp CTTCEEEEECCCTT---TH-HHHHHHHHHTTCEEEEECTT-CSSHH---HHHTTCSEEEECCCCTTCBCGGGSCTTCEEE
T ss_pred CCCCEEEEECCCch---HH-HHHHHHHHhCCCeEEEEECC-cccHH---HHhccCCEEEECCCCcccCCHHHcCCCcEEE
Confidence 34568899998753 11 13566777889999988643 34444 5678999999999875 55556779999999
Q ss_pred EEe
Q 013451 339 QVI 341 (442)
Q Consensus 339 EI~ 341 (442)
-+-
T Consensus 235 DVg 237 (301)
T 1a4i_A 235 DCG 237 (301)
T ss_dssp ECC
T ss_pred Ecc
Confidence 774
No 7
>3czx_A Putative N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI, MCSG, protein structure initiative; 1.60A {Neisseria meningitidis MC58}
Probab=73.61 E-value=4.6 Score=36.41 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=36.6
Q ss_pred HHHHHHHHc-CCEEEEEcCC-CCCCHHHHHHHHhcCCEEEeechhhhhh
Q 013451 281 SLVKMAEDI-GFQVQVVRPD-RTSELAKIYRALNSSDVMVGVHGAAMTH 327 (442)
Q Consensus 281 ev~~~l~~~-Gf~v~v~~~~-~~~s~~eq~~l~~~adVlVGvHGAgLtN 327 (442)
+|.+.|++. |++|+....+ ...++.+-+++.+.||++|++|--+..|
T Consensus 36 ~l~~~L~~~~G~~V~~tR~~d~~~~L~~R~~~an~adlfISIH~Na~~~ 84 (182)
T 3czx_A 36 IVASILRNDYGLTVKTDGTGKGNMPLRDAVKLIRGSDVAIEFHTNAAAN 84 (182)
T ss_dssp HHHHHHHHHHCCCEEESCSSCCCCCHHHHHHHHHTCSEEEEECCBCCSS
T ss_pred HHHHHHhhcCCcEEEEecCCCccCCHHHHHHHhhCCCEEEEeccCCCCC
Confidence 345556677 9999876654 3478999999999999999999766554
No 8
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=73.48 E-value=17 Score=35.60 Aligned_cols=94 Identities=15% Similarity=0.222 Sum_probs=62.1
Q ss_pred CEEEEEEeCCCccccCHHHHHHHHHH-cCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhhhh---------hhccC
Q 013451 263 PKLVILSRNGSRAITNENSLVKMAED-IGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTH---------FLFMK 332 (442)
Q Consensus 263 prv~ii~R~~~R~i~Ne~ev~~~l~~-~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgLtN---------~lFm~ 332 (442)
.+|++++|+.. .....+++.+.+.+ .|+++.+...+ +..+--+.+..+|++|..-.+||.. .-+++
T Consensus 179 ~~V~i~nR~~~-~~~~a~~la~~~~~~~~~~~~~~~~~---~~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~ 254 (315)
T 3tnl_A 179 KEISIFNRKDD-FYANAEKTVEKINSKTDCKAQLFDIE---DHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLR 254 (315)
T ss_dssp SEEEEEECSST-THHHHHHHHHHHHHHSSCEEEEEETT---CHHHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGGCC
T ss_pred CEEEEEECCCc-hHHHHHHHHHHhhhhcCCceEEeccc---hHHHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHHcC
Confidence 37888888742 13344555555554 46777766654 3344345678999999888888752 22467
Q ss_pred CCcEEEEEeeCCCCcccccchHhHHhhcCCcE
Q 013451 333 PGSVFIQVIPLGTDWAAETYYGEPARKLGLKY 364 (442)
Q Consensus 333 pgs~vIEI~P~g~~~~~~~~y~~~A~~~Gl~Y 364 (442)
++.+|++++--- ..+.|-..|+..|.+.
T Consensus 255 ~~~~V~DlvY~P----~~T~ll~~A~~~G~~~ 282 (315)
T 3tnl_A 255 PELIVSDVVYKP----TKTRLLEIAEEQGCQT 282 (315)
T ss_dssp TTCEEEESCCSS----SSCHHHHHHHHTTCEE
T ss_pred CCCEEEEeccCC----CCCHHHHHHHHCCCeE
Confidence 889999987321 2467888899999864
No 9
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=70.10 E-value=9.2 Score=37.25 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=53.2
Q ss_pred CCCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEEE
Q 013451 260 SKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVFI 338 (442)
Q Consensus 260 ~~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAg-LtN~lFm~pgs~vI 338 (442)
-..-++++|.|.+. +- .-+...|...|.+|.+.... +.++. +.+++||++|+.=|+. +-..=|.+||++||
T Consensus 157 l~gk~vvVIG~s~i---VG-~p~A~lL~~~gAtVtv~hs~-t~~L~---~~~~~ADIVI~Avg~p~lI~~~~vk~GavVI 228 (288)
T 1b0a_A 157 TFGLNAVVIGASNI---VG-RPMSMELLLAGCTTTVTHRF-TKNLR---HHVENADLLIVAVGKPGFIPGDWIKEGAIVI 228 (288)
T ss_dssp CTTCEEEEECCCTT---TH-HHHHHHHHTTTCEEEEECSS-CSCHH---HHHHHCSEEEECSCCTTCBCTTTSCTTCEEE
T ss_pred CCCCEEEEECCChH---HH-HHHHHHHHHCCCeEEEEeCC-chhHH---HHhccCCEEEECCCCcCcCCHHHcCCCcEEE
Confidence 34568899998753 11 13566777889999988643 44554 4567999999999876 55555679999999
Q ss_pred EEe
Q 013451 339 QVI 341 (442)
Q Consensus 339 EI~ 341 (442)
-+-
T Consensus 229 DVg 231 (288)
T 1b0a_A 229 DVG 231 (288)
T ss_dssp ECC
T ss_pred Ecc
Confidence 875
No 10
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=69.06 E-value=12 Score=36.58 Aligned_cols=71 Identities=20% Similarity=0.370 Sum_probs=53.1
Q ss_pred CCCCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcE
Q 013451 260 SKKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSV 336 (442)
Q Consensus 260 ~~~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~pgs~ 336 (442)
-..-++++|.|..- | -+..+|.+.|..|.+.... +.++.+ ..++|||+|+.=| +++-..=|.+||++
T Consensus 177 l~Gk~vvViGRS~iVGk------Pla~LL~~~~ATVTi~Hs~-T~dl~~---~~~~ADIvV~A~G~p~~i~~d~vk~Gav 246 (303)
T 4b4u_A 177 IAGKHAVVVGRSAILGK------PMAMMLLQANATVTICHSR-TQNLPE---LVKQADIIVGAVGKAELIQKDWIKQGAV 246 (303)
T ss_dssp CTTCEEEEECCCTTTHH------HHHHHHHHTTCEEEEECTT-CSSHHH---HHHTCSEEEECSCSTTCBCGGGSCTTCE
T ss_pred CCCCEEEEEeccccccc------hHHHHHHhcCCEEEEecCC-CCCHHH---HhhcCCeEEeccCCCCccccccccCCCE
Confidence 34558899998864 4 3556677789999988654 566665 5678999998766 56666668999999
Q ss_pred EEEE
Q 013451 337 FIQV 340 (442)
Q Consensus 337 vIEI 340 (442)
||-+
T Consensus 247 VIDV 250 (303)
T 4b4u_A 247 VVDA 250 (303)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9975
No 11
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=58.85 E-value=19 Score=34.94 Aligned_cols=73 Identities=19% Similarity=0.284 Sum_probs=51.5
Q ss_pred CCCEEEEEEeCCCccccCHHHHHHHHHHc--CCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEE
Q 013451 261 KKPKLVILSRNGSRAITNENSLVKMAEDI--GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVF 337 (442)
Q Consensus 261 ~~prv~ii~R~~~R~i~Ne~ev~~~l~~~--Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAg-LtN~lFm~pgs~v 337 (442)
..-++++|.|.+. +- .-+...|... |.+|.+..-. +.++ .+.+++|||+|+.-|+. +-..=|.+||++|
T Consensus 157 ~gk~vvVvG~s~i---VG-~p~A~lL~~~g~~atVtv~h~~-t~~L---~~~~~~ADIVI~Avg~p~~I~~~~vk~GavV 228 (281)
T 2c2x_A 157 AGAHVVVIGRGVT---VG-RPLGLLLTRRSENATVTLCHTG-TRDL---PALTRQADIVVAAVGVAHLLTADMVRPGAAV 228 (281)
T ss_dssp TTCEEEEECCCTT---TH-HHHHHHHTSTTTCCEEEEECTT-CSCH---HHHHTTCSEEEECSCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCcH---HH-HHHHHHHhcCCCCCEEEEEECc-hhHH---HHHHhhCCEEEECCCCCcccCHHHcCCCcEE
Confidence 4568899998753 11 1245566677 8899887543 3344 45678999999999976 6656677999999
Q ss_pred EEEe
Q 013451 338 IQVI 341 (442)
Q Consensus 338 IEI~ 341 (442)
|-+-
T Consensus 229 IDVg 232 (281)
T 2c2x_A 229 IDVG 232 (281)
T ss_dssp EECC
T ss_pred EEcc
Confidence 8764
No 12
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=57.01 E-value=16 Score=32.69 Aligned_cols=44 Identities=23% Similarity=0.340 Sum_probs=29.4
Q ss_pred HHHHHHHcCCEE-EEEcCCCC-C----CHHHHHHHHhc--CCEEEeechhhh
Q 013451 282 LVKMAEDIGFQV-QVVRPDRT-S----ELAKIYRALNS--SDVMVGVHGAAM 325 (442)
Q Consensus 282 v~~~l~~~Gf~v-~v~~~~~~-~----s~~eq~~l~~~--adVlVGvHGAgL 325 (442)
|.+.|++.|++| +++.-+.+ . ++.+.+++.++ ||++|++|--+.
T Consensus 38 l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISIH~Na~ 89 (180)
T 3qay_A 38 LADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIELHLNAS 89 (180)
T ss_dssp HHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEEEEECS
T ss_pred HHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEeeeCCC
Confidence 445566679997 33332211 2 48888888865 999999997654
No 13
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=56.74 E-value=15 Score=32.90 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=34.8
Q ss_pred HHHHHHHHc-CCEEEEEcCC-CCCCHHHHHHHHh--cCCEEEeechhhhhh
Q 013451 281 SLVKMAEDI-GFQVQVVRPD-RTSELAKIYRALN--SSDVMVGVHGAAMTH 327 (442)
Q Consensus 281 ev~~~l~~~-Gf~v~v~~~~-~~~s~~eq~~l~~--~adVlVGvHGAgLtN 327 (442)
.|.+.|++. |++|+....+ ...++.+.+++.+ .||++|++|--+..|
T Consensus 36 ~l~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSiH~Na~~~ 86 (179)
T 1jwq_A 36 KVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHANSSGS 86 (179)
T ss_dssp HHHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEEEECCSS
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEEccCCCCC
Confidence 345556667 9999876544 3478999888887 699999999766543
No 14
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=55.54 E-value=24 Score=33.19 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=39.0
Q ss_pred CCCEEEEEEeCCCccccCHHH----HHHHHHHcCCEEEEEcCCCCCC-----------HHHHHHHHhcCCEEEe
Q 013451 261 KKPKLVILSRNGSRAITNENS----LVKMAEDIGFQVQVVRPDRTSE-----------LAKIYRALNSSDVMVG 319 (442)
Q Consensus 261 ~~prv~ii~R~~~R~i~Ne~e----v~~~l~~~Gf~v~v~~~~~~~s-----------~~eq~~l~~~adVlVG 319 (442)
...+|++|.=.. |+=.|-.. +++.+++.|.+|.+++.. +++ +.+.++.+.+||.+|=
T Consensus 33 ~~mkIliI~GS~-r~~s~t~~La~~~~~~l~~~g~eve~idL~-~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~ 104 (247)
T 2q62_A 33 HRPRILILYGSL-RTVSYSRLLAEEARRLLEFFGAEVKVFDPS-GLPLPDAAPVSHPKVQELRELSIWSEGQVW 104 (247)
T ss_dssp SCCEEEEEECCC-CSSCHHHHHHHHHHHHHHHTTCEEEECCCT-TCCCTTSSCTTSHHHHHHHHHHHHCSEEEE
T ss_pred CCCeEEEEEccC-CCCCHHHHHHHHHHHHHhhCCCEEEEEEhh-cCCCCcCCCCCCHHHHHHHHHHHHCCEEEE
Confidence 456888887221 43333333 455556679999998876 455 7888999999999874
No 15
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=55.40 E-value=56 Score=31.78 Aligned_cols=93 Identities=15% Similarity=0.199 Sum_probs=60.6
Q ss_pred EEEEEEeCCCccccCHHHHHHHHHH-cCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhhh---h------hhccCC
Q 013451 264 KLVILSRNGSRAITNENSLVKMAED-IGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMT---H------FLFMKP 333 (442)
Q Consensus 264 rv~ii~R~~~R~i~Ne~ev~~~l~~-~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgLt---N------~lFm~p 333 (442)
++++++|...| ....+++.+.+.+ .|..+.+.+.+ ++.+-.+.+..+|++|..-.+||. . .-++++
T Consensus 174 ~v~v~nRt~~~-~~~a~~la~~~~~~~~~~v~~~~~~---~l~~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~ 249 (312)
T 3t4e_A 174 EIKLFNRKDDF-FEKAVAFAKRVNENTDCVVTVTDLA---DQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRP 249 (312)
T ss_dssp EEEEEECSSTH-HHHHHHHHHHHHHHSSCEEEEEETT---CHHHHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGGSCT
T ss_pred EEEEEECCCch-HHHHHHHHHHhhhccCcceEEechH---hhhhhHhhccCceEEEECCcCCCCCCCCCcccCCHHHcCC
Confidence 77888887432 3334455555543 46777666543 332224567889999998888872 1 135678
Q ss_pred CcEEEEEeeCCCCcccccchHhHHhhcCCcE
Q 013451 334 GSVFIQVIPLGTDWAAETYYGEPARKLGLKY 364 (442)
Q Consensus 334 gs~vIEI~P~g~~~~~~~~y~~~A~~~Gl~Y 364 (442)
+.+|++++--- ..+.|-..|+..|.+.
T Consensus 250 ~~~v~D~vY~P----~~T~ll~~A~~~G~~~ 276 (312)
T 3t4e_A 250 ELLVTECVYNP----HMTKLLQQAQQAGCKT 276 (312)
T ss_dssp TCEEEECCCSS----SSCHHHHHHHHTTCEE
T ss_pred CCEEEEeccCC----CCCHHHHHHHHCCCeE
Confidence 89999987321 2467888899999764
No 16
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=55.33 E-value=11 Score=32.63 Aligned_cols=55 Identities=15% Similarity=0.249 Sum_probs=40.9
Q ss_pred CCCEEEEEEeCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCCC-CHHHHHHHHhcCCEEE
Q 013451 261 KKPKLVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPDRTS-ELAKIYRALNSSDVMV 318 (442)
Q Consensus 261 ~~prv~ii~R~~~-R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~-s~~eq~~l~~~adVlV 318 (442)
++.-|+|.|..|+ +++.+ .+.+.+++.|.+|.+.+.. .. +..+.+..+..+|.+|
T Consensus 5 ~kv~IvY~S~~GnT~~iA~--~ia~~l~~~g~~v~~~~~~-~~~~~~~~~~~~~~~d~ii 61 (159)
T 3fni_A 5 TSIGVFYVSEYGYSDRLAQ--AIINGITKTGVGVDVVDLG-AAVDLQELRELVGRCTGLV 61 (159)
T ss_dssp CEEEEEECTTSTTHHHHHH--HHHHHHHHTTCEEEEEESS-SCCCHHHHHHHHHTEEEEE
T ss_pred CEEEEEEECCChHHHHHHH--HHHHHHHHCCCeEEEEECc-CcCCHHHHHHHHHhCCEEE
Confidence 3456667777776 66654 4677777889999998887 46 7888888888888655
No 17
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=54.46 E-value=8.3 Score=41.90 Aligned_cols=116 Identities=16% Similarity=0.204 Sum_probs=75.2
Q ss_pred CCEEEEEEeCCC-cccc--------------CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhhh
Q 013451 262 KPKLVILSRNGS-RAIT--------------NENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMT 326 (442)
Q Consensus 262 ~prv~ii~R~~~-R~i~--------------Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgLt 326 (442)
..+|.++.=.|+ |.+. ...=++++|...+++|..+..+ .+.+. ......|||| =+|.+
T Consensus 438 ~~kVAVLnsWGklRSW~~~~vaHak~~kq~ysy~GilEALsg~~~dV~FIsfd---DI~e~-e~L~d~DVII---n~G~A 510 (759)
T 2zuv_A 438 ELNVAILNSWGKMRSWMAFTVAHALPNKQTYSYYGILESLSGMRVNVRFISFD---DVLAH-GIDSDIDVII---NGGPV 510 (759)
T ss_dssp CSEEEEEESSGGGGTTTTTCSSTTCCCTTTHHHHHHHHHHHTSSSEEEEEEHH---HHHHH-CCCTTCCEEE---EEECT
T ss_pred CceEEEEecCCCCcccccccccccccccccccHHHHHHHHhcCCCceEEecHH---Hhccc-cccccCCEEE---ecCcc
Confidence 468888887765 5444 2233899999999999987653 33332 4578999999 56666
Q ss_pred hhhccCC------------------CcEEEEEeeC-CC-CcccccchHhHHhhcCCcEEEEEeccCCCccccccC----C
Q 013451 327 HFLFMKP------------------GSVFIQVIPL-GT-DWAAETYYGEPARKLGLKYIGYTILPRESSLYDQYD----K 382 (442)
Q Consensus 327 N~lFm~p------------------gs~vIEI~P~-g~-~~~~~~~y~~~A~~~Gl~Y~~y~i~~~Essl~~~y~----~ 382 (442)
|.+|+.+ |..+|=+--+ .+ ++ ...-|..+|..+|++...+.- .. ..+|+ .
T Consensus 511 ~TalSgg~~W~~p~~~~aLR~fV~~GGgLIgVGepSsfqg~-g~gryFqLADVLGVd~e~g~d-lp----~gkY~~~~~~ 584 (759)
T 2zuv_A 511 DTAFTGGDVWTNPKLVETVRAWVRGGGAFVGVGEPSSAPRF-QTGRFFQLADVIGVDEERYQT-LS----VDKYFPPVVP 584 (759)
T ss_dssp TSTTTCGGGGGCHHHHHHHHHHHHTTCEEEEEESTTEEEEE-ETTEEETTHHHHSEEECCSSC-TT----BCCBCCCCCC
T ss_pred hhcccCccccCCHHHHHHHHHHHHcCCcEEEeCCccccccc-cCcccccHHhhcCcccccCCc-CC----CCccccccCC
Confidence 6677666 6777766633 22 12 223444599999998765432 11 34455 3
Q ss_pred CCCccCCC
Q 013451 383 NDPVLRDP 390 (442)
Q Consensus 383 ~~~v~~dP 390 (442)
+|+++.|-
T Consensus 585 ~HfIl~di 592 (759)
T 2zuv_A 585 DHFITADV 592 (759)
T ss_dssp SCTTTTTC
T ss_pred CCceeccc
Confidence 69988763
No 18
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=52.60 E-value=23 Score=31.88 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEe
Q 013451 281 SLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVG 319 (442)
Q Consensus 281 ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVG 319 (442)
++++.+++.|.+|.+++.....++.+..+.+..||+||=
T Consensus 38 ~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~ 76 (204)
T 2amj_A 38 VADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIW 76 (204)
T ss_dssp HHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEE
Confidence 455556667999999998756789999999999999874
No 19
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=51.92 E-value=29 Score=34.18 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=52.6
Q ss_pred CCCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCC---------------CC------CCHHHHHHHHhcCCEEE
Q 013451 260 SKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPD---------------RT------SELAKIYRALNSSDVMV 318 (442)
Q Consensus 260 ~~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~---------------~~------~s~~eq~~l~~~adVlV 318 (442)
-..-++++|.|... +. .-+...|...|.+|.+++-+ .. .+..+--+.+++|||+|
T Consensus 175 l~gk~vvVIG~G~i---VG-~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVI 250 (320)
T 1edz_A 175 LYGKKCIVINRSEI---VG-RPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI 250 (320)
T ss_dssp TTTCEEEEECCCTT---TH-HHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred CCCCEEEEECCCcc---hH-HHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEE
Confidence 34568899998742 11 12566677789998887431 10 11266778899999999
Q ss_pred eechhh--hhhhhccCCCcEEEEEe
Q 013451 319 GVHGAA--MTHFLFMKPGSVFIQVI 341 (442)
Q Consensus 319 GvHGAg--LtN~lFm~pgs~vIEI~ 341 (442)
+.-|+- +-..=|++||++||-+-
T Consensus 251 sAtg~p~~vI~~e~vk~GavVIDVg 275 (320)
T 1edz_A 251 TGVPSENYKFPTEYIKEGAVCINFA 275 (320)
T ss_dssp ECCCCTTCCBCTTTSCTTEEEEECS
T ss_pred ECCCCCcceeCHHHcCCCeEEEEcC
Confidence 999985 23334568999998763
No 20
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=51.87 E-value=32 Score=33.12 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=39.6
Q ss_pred CCCCEEEEEEeCCCccccCHH----HHHHHHHHcCCEEEEEcCCCCCC------------HHHHHHHHhcCCEEEe
Q 013451 260 SKKPKLVILSRNGSRAITNEN----SLVKMAEDIGFQVQVVRPDRTSE------------LAKIYRALNSSDVMVG 319 (442)
Q Consensus 260 ~~~prv~ii~R~~~R~i~Ne~----ev~~~l~~~Gf~v~v~~~~~~~s------------~~eq~~l~~~adVlVG 319 (442)
...++|++|.=.. |+=.|-. ++++.+++.|.++.+++.. +++ +.+.++.+..||.+|=
T Consensus 56 ~~~mKILiI~GS~-R~~S~T~~La~~~~~~l~~~G~eveiidL~-dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~ 129 (279)
T 2fzv_A 56 APPVRILLLYGSL-RARSFSRLAVEEAARLLQFFGAETRIFDPS-DLPLPDQVQSDDHPAVKELRALSEWSEGQVW 129 (279)
T ss_dssp CSCCEEEEEESCC-SSSCHHHHHHHHHHHHHHHTTCEEEEBCCT-TCCCTTTSGGGCCHHHHHHHHHHHHCSEEEE
T ss_pred CCCCEEEEEEeCC-CCCCHHHHHHHHHHHHHhhCCCEEEEEehh-cCCCCccCccCCCHHHHHHHHHHHHCCeEEE
Confidence 3467888887221 3333332 3555566779999999876 455 6778899999999873
No 21
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=50.81 E-value=58 Score=31.31 Aligned_cols=133 Identities=10% Similarity=0.016 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCEEEEEcCCCC-C----CHHHHHHHHhcCCEEEeech--h---hhh---hhhccCCCcEEEEEeeCCCCc
Q 013451 281 SLVKMAEDIGFQVQVVRPDRT-S----ELAKIYRALNSSDVMVGVHG--A---AMT---HFLFMKPGSVFIQVIPLGTDW 347 (442)
Q Consensus 281 ev~~~l~~~Gf~v~v~~~~~~-~----s~~eq~~l~~~adVlVGvHG--A---gLt---N~lFm~pgs~vIEI~P~g~~~ 347 (442)
.+++.|+..|++|...+.... . ...+--+++..||+++-.=- . ++- .+-.|+||+.+|-+---+.
T Consensus 136 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~-- 213 (290)
T 3gvx_A 136 RVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADV-- 213 (290)
T ss_dssp HHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGG--
T ss_pred HHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcc--
Confidence 578888999999999876421 0 01123356788999875432 1 121 2234899999987643221
Q ss_pred ccccchHhHH---hhcCCcEEEEEeccCCCccccccCCCCCccCCCCc---ccccCccccceeecCCCceEEehHHHHHH
Q 013451 348 AAETYYGEPA---RKLGLKYIGYTILPRESSLYDQYDKNDPVLRDPSS---VNEKGWQYTKTIYLDGQNVRLNLRRFQKR 421 (442)
Q Consensus 348 ~~~~~y~~~A---~~~Gl~Y~~y~i~~~Essl~~~y~~~~~v~~dP~~---~~~~gw~~~~~~yl~~Qdv~vDi~rF~~~ 421 (442)
..-..++ +.-++....-.+...| |. ||.+.-|.. +|-.||.. .+.+.+.
T Consensus 214 ---vd~~aL~~aL~~g~i~ga~lDV~~~E-------P~-~pL~~~~nvilTPHiag~~t--------------~e~~~~~ 268 (290)
T 3gvx_A 214 ---VSKPDMIGFLKERSDVWYLSDVWWNE-------PE-ITETNLRNAILSPHVAGGMS--------------GEIMDIA 268 (290)
T ss_dssp ---BCHHHHHHHHHHCTTCEEEESCCTTT-------TS-CCSCCCSSEEECCSCSSCBT--------------TBCCHHH
T ss_pred ---cCCcchhhhhhhccceEEeeccccCC-------cc-cchhhhhhhhcCccccCCcc--------------chHHHHH
Confidence 1222333 2345666555554334 22 667666653 36554421 1334567
Q ss_pred HHHHHHHHHHhhhccCCCC
Q 013451 422 LVRAYDYSINRISQNCHHQ 440 (442)
Q Consensus 422 L~~al~~~~~~~~~~~~~~ 440 (442)
.+.+++...+++.-+|+|.
T Consensus 269 ~~~~~~ni~~~~~~~~~~~ 287 (290)
T 3gvx_A 269 IQLAFENVRNFFEGEGHHH 287 (290)
T ss_dssp HHHHHHHHHHHTC------
T ss_pred HHHHHHHHHhhhcCCCccc
Confidence 7778888889988888775
No 22
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.24A {Bartonella henselae}
Probab=50.41 E-value=20 Score=33.50 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=33.4
Q ss_pred HHHHHHHcC-CEEEEEcCC-CCCCHHHHHHHHh--cCCEEEeechhhhhh
Q 013451 282 LVKMAEDIG-FQVQVVRPD-RTSELAKIYRALN--SSDVMVGVHGAAMTH 327 (442)
Q Consensus 282 v~~~l~~~G-f~v~v~~~~-~~~s~~eq~~l~~--~adVlVGvHGAgLtN 327 (442)
|.+.|++.| ++|+....+ ...++.+.+++.+ .||++|++|--+..+
T Consensus 39 l~~~L~~~g~~~V~~tR~~D~~~~l~~R~~~An~~~adlfiSiH~Na~~~ 88 (234)
T 3ne8_A 39 LRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDV 88 (234)
T ss_dssp HHHHHHHSSSEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEECCCCSC
T ss_pred HHHHHHhCCCcEEEEeCCCCCcCCHHHHHHHHHhhCCCEEEEEecCCCCC
Confidence 344455567 898876543 3468999988888 799999999766543
No 23
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=46.48 E-value=22 Score=32.87 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEe
Q 013451 281 SLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVG 319 (442)
Q Consensus 281 ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVG 319 (442)
++++.+++.|.+|.+++.....++.+..+.+..||++|=
T Consensus 51 ~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~ 89 (218)
T 3rpe_A 51 VAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIY 89 (218)
T ss_dssp HHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEE
T ss_pred HHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEE
Confidence 456667778999999998766789999999999999874
No 24
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=46.20 E-value=37 Score=32.43 Aligned_cols=92 Identities=14% Similarity=0.112 Sum_probs=56.8
Q ss_pred CEEEEEEeCCC-ccccCHHHHHHHHHHcCC-EEEEEcCCC-----------CCCHHHHHHHHhcCCEEEeechhhhhhh-
Q 013451 263 PKLVILSRNGS-RAITNENSLVKMAEDIGF-QVQVVRPDR-----------TSELAKIYRALNSSDVMVGVHGAAMTHF- 328 (442)
Q Consensus 263 prv~ii~R~~~-R~i~Ne~ev~~~l~~~Gf-~v~v~~~~~-----------~~s~~eq~~l~~~adVlVGvHGAgLtN~- 328 (442)
.+++++.-.+. | .++..|.+.|+ +|.++.-.. ..++.+.-+.+..+|++|..-.+|+..-
T Consensus 118 k~vlvlGaGg~g~------aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~ 191 (277)
T 3don_A 118 AYILILGAGGASK------GIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNT 191 (277)
T ss_dssp CCEEEECCSHHHH------HHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------
T ss_pred CEEEEECCcHHHH------HHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCC
Confidence 35667764322 3 46677777887 677665321 0145665566889999999888887432
Q ss_pred ------hccCCCcEEEEEeeCCCCcccccchHhHHhhcCCcE
Q 013451 329 ------LFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKY 364 (442)
Q Consensus 329 ------lFm~pgs~vIEI~P~g~~~~~~~~y~~~A~~~Gl~Y 364 (442)
-+++++++|++++-.- ..+.+-..|+..|.+.
T Consensus 192 ~~~l~~~~l~~~~~V~D~vY~P----~~T~ll~~A~~~G~~~ 229 (277)
T 3don_A 192 DSVISLNRLASHTLVSDIVYNP----YKTPILIEAEQRGNPI 229 (277)
T ss_dssp CCSSCCTTCCSSCEEEESCCSS----SSCHHHHHHHHTTCCE
T ss_pred cCCCCHHHcCCCCEEEEecCCC----CCCHHHHHHHHCcCEE
Confidence 2467899999986221 1346777888899865
No 25
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=45.50 E-value=21 Score=30.79 Aligned_cols=52 Identities=17% Similarity=0.223 Sum_probs=37.7
Q ss_pred EEEEEEeCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEE
Q 013451 264 KLVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMV 318 (442)
Q Consensus 264 rv~ii~R~~~-R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlV 318 (442)
-++|.|..|+ +++.+ .+.+.+++.|.+|.+.+.. ..+..+.+.-+.++|.+|
T Consensus 4 ~IvY~S~tGnT~~~A~--~ia~~l~~~g~~v~~~~~~-~~~~~~~~~~~~~~d~ii 56 (161)
T 3hly_A 4 LIGYLSDYGYSDRLSQ--AIGRGLVKTGVAVEMVDLR-AVDPQELIEAVSSARGIV 56 (161)
T ss_dssp EEEECTTSTTHHHHHH--HHHHHHHHTTCCEEEEETT-TCCHHHHHHHHHHCSEEE
T ss_pred EEEEECCChHHHHHHH--HHHHHHHhCCCeEEEEECC-CCCHHHHHHHHHhCCEEE
Confidence 4667777765 55544 4666677789999888876 567888777788888755
No 26
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=44.28 E-value=50 Score=30.05 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=46.8
Q ss_pred CCEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhhh
Q 013451 262 KPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMT 326 (442)
Q Consensus 262 ~prv~ii~R~~~--R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgLt 326 (442)
.+|++||.=... ..=.|...+.++++++|+++.+++.. ..+.++..+.+.+||.++=.=|.-.+
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~-~~~~~~~~~~l~~ad~I~l~GG~~~~ 92 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIA-TESLGEITTKLRKNDFIYVTGGNTFF 92 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTT-TSCHHHHHHHHHHSSEEEECCSCHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCChHHHHHHHHhCCEEEECCCCHHH
Confidence 489999973321 22246788999999999999987655 35667777889999998865565543
No 27
>1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain, hydrolase; 1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6
Probab=42.00 E-value=16 Score=36.01 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=28.1
Q ss_pred HHHHHHHcCCEEEE--EcCCC--CCCHHHHHHHHhc--CCEEEeechhh
Q 013451 282 LVKMAEDIGFQVQV--VRPDR--TSELAKIYRALNS--SDVMVGVHGAA 324 (442)
Q Consensus 282 v~~~l~~~Gf~v~v--~~~~~--~~s~~eq~~l~~~--adVlVGvHGAg 324 (442)
|.+.|++.|++|.| +.-+. ..++.+.+++.++ ||++|++|--+
T Consensus 46 l~~~L~~~G~~V~V~m~tR~~D~~~~L~~R~~~An~~~ADlfISIH~Na 94 (326)
T 1xov_A 46 ASDELKREGHNVKTFIDRTSTTQSANLNKIVNWHNANPADVHISVHLNA 94 (326)
T ss_dssp HHHHHHHTTCEEEEEEESSCCSHHHHHHHHHHHHHHSCCSEEEEEEEEC
T ss_pred HHHHHHhCCCceEEEEecCCCCccCCHHHHHHHHHhcCCCEEEEEeccC
Confidence 34445567999633 33221 2467777777775 99999999665
No 28
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=37.70 E-value=73 Score=30.35 Aligned_cols=87 Identities=18% Similarity=0.168 Sum_probs=54.7
Q ss_pred EEEEEEeCCCccccCHHHHHHHHHHc--CCEEEEEcCCCCCCHHHHHHHHhcCCEEEeechhhhhh-------hhccCCC
Q 013451 264 KLVILSRNGSRAITNENSLVKMAEDI--GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTH-------FLFMKPG 334 (442)
Q Consensus 264 rv~ii~R~~~R~i~Ne~ev~~~l~~~--Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHGAgLtN-------~lFm~pg 334 (442)
++++++|... ..+++.+.+... +.++...+.+ ++. +.+..+|++|..-.+|+.. .-+++++
T Consensus 153 ~v~i~~R~~~----~a~~la~~~~~~~~~~~i~~~~~~---~l~---~~l~~~DiVInaTp~Gm~~~~~~pi~~~~l~~~ 222 (283)
T 3jyo_A 153 KLQVADLDTS----RAQALADVINNAVGREAVVGVDAR---GIE---DVIAAADGVVNATPMGMPAHPGTAFDVSCLTKD 222 (283)
T ss_dssp EEEEECSSHH----HHHHHHHHHHHHHTSCCEEEECST---THH---HHHHHSSEEEECSSTTSTTSCSCSSCGGGCCTT
T ss_pred EEEEEECCHH----HHHHHHHHHHhhcCCceEEEcCHH---HHH---HHHhcCCEEEECCCCCCCCCCCCCCCHHHhCCC
Confidence 5667766532 234455555543 3455554432 333 4567899999888887753 2356788
Q ss_pred cEEEEEeeCCCCcccccchHhHHhhcCCcE
Q 013451 335 SVFIQVIPLGTDWAAETYYGEPARKLGLKY 364 (442)
Q Consensus 335 s~vIEI~P~g~~~~~~~~y~~~A~~~Gl~Y 364 (442)
.+|++++--- ..+.|-..|+..|.+.
T Consensus 223 ~~v~DlvY~P----~~T~ll~~A~~~G~~~ 248 (283)
T 3jyo_A 223 HWVGDVVYMP----IETELLKAARALGCET 248 (283)
T ss_dssp CEEEECCCSS----SSCHHHHHHHHHTCCE
T ss_pred CEEEEecCCC----CCCHHHHHHHHCcCeE
Confidence 9999987321 2467888889999865
No 29
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=37.61 E-value=1.7e+02 Score=27.69 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH-hcCCEEEeechhhhhhh----hccCCCcEEEEEeeCC
Q 013451 279 ENSLVKMAEDIGFQVQVVRPDRTSELAKIYRAL-NSSDVMVGVHGAAMTHF----LFMKPGSVFIQVIPLG 344 (442)
Q Consensus 279 e~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~-~~adVlVGvHGAgLtN~----lFm~pgs~vIEI~P~g 344 (442)
.+++.+.|++.|.++.+...+......++++.+ ..+|++|.+=|=|.-|. +.-.+...-|=++|.|
T Consensus 28 ~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDGTl~~v~~~l~~~~~~~~l~iiP~G 98 (304)
T 3s40_A 28 LTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDGTVFECTNGLAPLEIRPTLAIIPGG 98 (304)
T ss_dssp HHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccchHHHHHHHHHhhCCCCCcEEEecCC
Confidence 357888899999998887655334455554433 47899999999886554 4332345677889999
No 30
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=37.27 E-value=2.2e+02 Score=27.23 Aligned_cols=132 Identities=17% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCCHHHHH--------HHHhcCCEEEeechhhh-hhhhc-------cCCCcEEEEEeeCC
Q 013451 281 SLVKMAEDIGFQVQVVRPDRTSELAKIY--------RALNSSDVMVGVHGAAM-THFLF-------MKPGSVFIQVIPLG 344 (442)
Q Consensus 281 ev~~~l~~~Gf~v~v~~~~~~~s~~eq~--------~l~~~adVlVGvHGAgL-tN~lF-------m~pgs~vIEI~P~g 344 (442)
.+++.++..|++|.+.+.........+. +++..||+++-.-...- |.-++ |+||+.+|.+---+
T Consensus 156 ~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~ 235 (307)
T 1wwk_A 156 QVAKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGP 235 (307)
T ss_dssp HHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGG
T ss_pred HHHHHHHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCc
Q ss_pred CCcccccchHhHHhhcCCcEEEEEeccCCCccccccCCCCCccCCCCcc---cccCccccceeecCCCceEEehHHHHHH
Q 013451 345 TDWAAETYYGEPARKLGLKYIGYTILPRESSLYDQYDKNDPVLRDPSSV---NEKGWQYTKTIYLDGQNVRLNLRRFQKR 421 (442)
Q Consensus 345 ~~~~~~~~y~~~A~~~Gl~Y~~y~i~~~Essl~~~y~~~~~v~~dP~~~---~~~gw~~~~~~yl~~Qdv~vDi~rF~~~ 421 (442)
-.....-....+.-++....-.+...|-- +.+||.++.|..+ |-.++.. +...+.
T Consensus 236 --~vd~~aL~~aL~~g~i~ga~lDv~~~eP~-----~~~~~L~~~~nviltPh~~~~t~---------------~~~~~~ 293 (307)
T 1wwk_A 236 --VVDTNALVKALKEGWIAGAGLDVFEEEPL-----PKDHPLTKFDNVVLTPHIGASTV---------------EAQERA 293 (307)
T ss_dssp --GBCHHHHHHHHHHTSSSEEEESCCSSSSC-----CTTCGGGGCTTEEECSSCTTCBH---------------HHHHHH
T ss_pred --ccCHHHHHHHHHhCCCcEEEEecCCCCCC-----CCCChHHhCCCEEECCccccCcH---------------HHHHHH
Q ss_pred HHHHHHHHHHhhh
Q 013451 422 LVRAYDYSINRIS 434 (442)
Q Consensus 422 L~~al~~~~~~~~ 434 (442)
...+.+...+++.
T Consensus 294 ~~~~~~nl~~~~~ 306 (307)
T 1wwk_A 294 GVEVAEKVVKILK 306 (307)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
No 31
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=34.88 E-value=34 Score=30.23 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=34.0
Q ss_pred CEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCC---EEEee
Q 013451 263 PKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSD---VMVGV 320 (442)
Q Consensus 263 prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~ad---VlVGv 320 (442)
|++++|+-.++ + ...+++++++.|.+++++... .+.++..+.+...+ ++++.
T Consensus 1 ~~i~iiDn~~s--~--~~~i~~~l~~~G~~~~v~~~~--~~~~~i~~~l~~~~~~~iil~g 55 (192)
T 1i1q_B 1 ADILLLDNIDS--F--TWNLADQLRTNGHNVVIYRNH--IPAQTLIDRLATMKNPVLMLSP 55 (192)
T ss_dssp CEEEEEECSCS--S--HHHHHHHHHHTTCEEEEEETT--SCSHHHHHHHTTCSSEEEEECC
T ss_pred CcEEEEECCcc--H--HHHHHHHHHHCCCeEEEEECC--CCHHHHHHHhhhccCCeEEECC
Confidence 57888883332 2 235688999999999988764 45555445555444 66655
No 32
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=34.51 E-value=62 Score=32.85 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=24.6
Q ss_pred HHHHHhcCCEEEeech-hh------hhhhhc--cCCCcEEEEEe
Q 013451 307 IYRALNSSDVMVGVHG-AA------MTHFLF--MKPGSVFIQVI 341 (442)
Q Consensus 307 q~~l~~~adVlVGvHG-Ag------LtN~lF--m~pgs~vIEI~ 341 (442)
..+.+..|||+|+..+ .| +|.-++ |+||++||-+-
T Consensus 269 l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 269 VAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred HHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 3556789999998753 11 333333 89999999886
No 33
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=33.92 E-value=91 Score=29.69 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=39.0
Q ss_pred HHHHHHhcCCEEEeechhhhhh--------hhccCCCcEEEEEeeCCCCcccccchHhHHhhcCCcEE
Q 013451 306 KIYRALNSSDVMVGVHGAAMTH--------FLFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKYI 365 (442)
Q Consensus 306 eq~~l~~~adVlVGvHGAgLtN--------~lFm~pgs~vIEI~P~g~~~~~~~~y~~~A~~~Gl~Y~ 365 (442)
+-.+.+..+|++|..-++|+.- .-++++|++|+.+.- . . ..+.+-..|+..|.+++
T Consensus 197 ~~~~~~~~aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y-~--P-~~T~ll~~A~~~G~~~v 260 (297)
T 2egg_A 197 EAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIY-N--P-LETKWLKEAKARGARVQ 260 (297)
T ss_dssp HHHHTGGGCSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCC-S--S-SSCHHHHHHHHTTCEEE
T ss_pred HHHhhhccCCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCC-C--C-CCCHHHHHHHHCcCEEE
Confidence 3345678899999999999841 124678899999863 2 1 13447777888998764
No 34
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=31.01 E-value=87 Score=27.46 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=46.0
Q ss_pred CCCCCEEEEEEeCCC-ccccC--HHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHHHHh---cCCEEEeechhhhhh
Q 013451 259 QSKKPKLVILSRNGS-RAITN--ENSLVKMAEDIGFQVQVVR--PDRTSELAKIYRALN---SSDVMVGVHGAAMTH 327 (442)
Q Consensus 259 ~~~~prv~ii~R~~~-R~i~N--e~ev~~~l~~~Gf~v~v~~--~~~~~s~~eq~~l~~---~adVlVGvHGAgLtN 327 (442)
+-++||+-+|+=... -++.| -.-+.+.|++.|+++.... ++..-.+.+.++... .+|++|.-=|.|.|.
T Consensus 7 ~~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~ 83 (172)
T 1mkz_A 7 EFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTE 83 (172)
T ss_dssp SCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSST
T ss_pred CCCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCC
Confidence 346788888875543 23444 4467888999999875432 332235666665543 399999999998765
No 35
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=30.15 E-value=3e+02 Score=26.61 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCC--------HHHHHHHHhcCCEEEeech-hhhhhhhc-------cCCCcEEEEEeeCC
Q 013451 281 SLVKMAEDIGFQVQVVRPDRTSE--------LAKIYRALNSSDVMVGVHG-AAMTHFLF-------MKPGSVFIQVIPLG 344 (442)
Q Consensus 281 ev~~~l~~~Gf~v~v~~~~~~~s--------~~eq~~l~~~adVlVGvHG-AgLtN~lF-------m~pgs~vIEI~P~g 344 (442)
++++.|+.+|++|...+...... ..+--+++..||+++-.-- ..-|.-++ |+||+.+|-+---+
T Consensus 151 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~ 230 (324)
T 3evt_A 151 SLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGP 230 (324)
T ss_dssp HHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGG
T ss_pred HHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCCh
Q ss_pred CCcccccchHhHHhhcCCcEEEEEeccCCCccccccCCCCCccCCCCcc---cccCccccceeecCCCceEEehHHHHHH
Q 013451 345 TDWAAETYYGEPARKLGLKYIGYTILPRESSLYDQYDKNDPVLRDPSSV---NEKGWQYTKTIYLDGQNVRLNLRRFQKR 421 (442)
Q Consensus 345 ~~~~~~~~y~~~A~~~Gl~Y~~y~i~~~Essl~~~y~~~~~v~~dP~~~---~~~gw~~~~~~yl~~Qdv~vDi~rF~~~ 421 (442)
-.....-...-+.-++....-.+..+| -.+.+||.+.-|..+ |-.|+.. +...+.
T Consensus 231 --~vd~~aL~~aL~~g~i~gA~lDV~~~E-----Pl~~~~pL~~~~nvilTPHia~~t~---------------~~~~~~ 288 (324)
T 3evt_A 231 --AVDTTALMTALDHHQLSMAALDVTEPE-----PLPTDHPLWQRDDVLITPHISGQIA---------------HFRATV 288 (324)
T ss_dssp --GBCHHHHHHHHHTTSCSEEEESSCSSS-----SCCTTCGGGGCSSEEECCSCTTCCC---------------CHHHHH
T ss_pred --hhhHHHHHHHHHhCCceEEEeCCCCCC-----CCCCCChhhcCCCEEEcCccccChH---------------HHHHHH
Q ss_pred HHHHHHHHHHhh
Q 013451 422 LVRAYDYSINRI 433 (442)
Q Consensus 422 L~~al~~~~~~~ 433 (442)
...+++...+++
T Consensus 289 ~~~~~~nl~~~l 300 (324)
T 3evt_A 289 FPIFAANFAQFV 300 (324)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 36
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=29.01 E-value=65 Score=32.38 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=24.1
Q ss_pred HHHHhcCCEEEeec---hhh----hhhhhc--cCCCcEEEEEe
Q 013451 308 YRALNSSDVMVGVH---GAA----MTHFLF--MKPGSVFIQVI 341 (442)
Q Consensus 308 ~~l~~~adVlVGvH---GAg----LtN~lF--m~pgs~vIEI~ 341 (442)
.+.+..|||+|+.. |+. ++.-++ |+||++||-+-
T Consensus 260 ~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 260 EDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 46789999999864 311 233333 89999999885
No 37
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=28.49 E-value=54 Score=33.65 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=45.0
Q ss_pred CEEEEEEeCCC-ccccCHHHHHHHHHHcCCEEEEEcCCC------------CCCHHHHHHHHhcCCEEEeech-hhhh--
Q 013451 263 PKLVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPDR------------TSELAKIYRALNSSDVMVGVHG-AAMT-- 326 (442)
Q Consensus 263 prv~ii~R~~~-R~i~Ne~ev~~~l~~~Gf~v~v~~~~~------------~~s~~eq~~l~~~adVlVGvHG-AgLt-- 326 (442)
-+++++.-..- | .+++.|+..|.+|.+.+.+. ..++. +++..|||+|..-| .++-
T Consensus 221 ktV~ViG~G~IGk------~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Le---eal~~ADIVi~atgt~~lI~~ 291 (435)
T 3gvp_A 221 KQVVVCGYGEVGK------GCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLN---EVIRQVDIVITCTGNKNVVTR 291 (435)
T ss_dssp CEEEEECCSHHHH------HHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHH---HHTTTCSEEEECSSCSCSBCH
T ss_pred CEEEEEeeCHHHH------HHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHH---HHHhcCCEEEECCCCcccCCH
Confidence 36666654321 2 46778888899988877431 12333 46779999999755 2333
Q ss_pred -hhhccCCCcEEEEEe
Q 013451 327 -HFLFMKPGSVFIQVI 341 (442)
Q Consensus 327 -N~lFm~pgs~vIEI~ 341 (442)
.+--|++|+.||-+-
T Consensus 292 e~l~~MK~gailINvg 307 (435)
T 3gvp_A 292 EHLDRMKNSCIVCNMG 307 (435)
T ss_dssp HHHHHSCTTEEEEECS
T ss_pred HHHHhcCCCcEEEEec
Confidence 344489999998764
No 38
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=28.41 E-value=1.7e+02 Score=27.44 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=48.2
Q ss_pred CCCEEEEEE--eCCCcccc--CHHHHHHHHHHcCCEEEEE-cC-------------------CCCCCHHHHHHHHhcCCE
Q 013451 261 KKPKLVILS--RNGSRAIT--NENSLVKMAEDIGFQVQVV-RP-------------------DRTSELAKIYRALNSSDV 316 (442)
Q Consensus 261 ~~prv~ii~--R~~~R~i~--Ne~ev~~~l~~~Gf~v~v~-~~-------------------~~~~s~~eq~~l~~~adV 316 (442)
.+|.+++.- |...|++- +-.|+++.|.+.|+++++. .. ...+++.|-+++++.||+
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~~~~~~~l~g~~sl~el~ali~~a~l 256 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKF 256 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHTTCTTEEECCCCCHHHHHHHHHTCSE
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHhhCCcccccCCCCHHHHHHHHHhCCE
Confidence 355555432 22235555 4456666665557777664 11 013579999999999999
Q ss_pred EEeechhhhhhhhccCCCcEEEEEeeC
Q 013451 317 MVGVHGAAMTHFLFMKPGSVFIQVIPL 343 (442)
Q Consensus 317 lVGvHGAgLtN~lFm~pgs~vIEI~P~ 343 (442)
+||+= +|.+|+.-+ =|.-+|-|+..
T Consensus 257 ~I~~D-SG~~HlAaa-~g~P~v~lfg~ 281 (326)
T 2gt1_A 257 VVSVD-TGLSHLTAA-LDRPNITVYGP 281 (326)
T ss_dssp EEEES-SHHHHHHHH-TTCCEEEEESS
T ss_pred EEecC-CcHHHHHHH-cCCCEEEEECC
Confidence 99994 233444333 35566666643
No 39
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=28.16 E-value=58 Score=26.27 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=30.9
Q ss_pred EEEEEeCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEE
Q 013451 265 LVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMV 318 (442)
Q Consensus 265 v~ii~R~~~-R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlV 318 (442)
+++-|+.|+ +++.. ++.+.+++.|+++.+++.. +.+.. .+.++|.+|
T Consensus 4 iiy~S~tGnT~~~a~--~i~~~l~~~g~~v~~~~~~-~~~~~----~l~~~d~vi 51 (137)
T 2fz5_A 4 IVYWSGTGNTEAMAN--EIEAAVKAAGADVESVRFE-DTNVD----DVASKDVIL 51 (137)
T ss_dssp EEECCSSSHHHHHHH--HHHHHHHHTTCCEEEEETT-SCCHH----HHHTCSEEE
T ss_pred EEEECCCChHHHHHH--HHHHHHHhCCCeEEEEEcc-cCCHH----HHhcCCEEE
Confidence 556676665 65553 5666777789999888876 34443 356788755
No 40
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=27.86 E-value=3.1e+02 Score=26.29 Aligned_cols=80 Identities=8% Similarity=0.083 Sum_probs=49.8
Q ss_pred CCCEEEEEE--eCCCcccc--CHHHHHHHHHHcCCEEEEEcC---------------------CCCCCHHHHHHHHhcCC
Q 013451 261 KKPKLVILS--RNGSRAIT--NENSLVKMAEDIGFQVQVVRP---------------------DRTSELAKIYRALNSSD 315 (442)
Q Consensus 261 ~~prv~ii~--R~~~R~i~--Ne~ev~~~l~~~Gf~v~v~~~---------------------~~~~s~~eq~~l~~~ad 315 (442)
.+|.+++.- |...|++- +-.|+++.|.+.|++++++.. ...+++.|-+++++.||
T Consensus 184 ~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~ 263 (349)
T 3tov_A 184 TDILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCN 263 (349)
T ss_dssp TCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCS
T ss_pred CCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCC
Confidence 355555543 22235554 556777777766888766421 11368999999999999
Q ss_pred EEEeechhhhhhhhccCCCcEEEEEee
Q 013451 316 VMVGVHGAAMTHFLFMKPGSVFIQVIP 342 (442)
Q Consensus 316 VlVGvHGAgLtN~lFm~pgs~vIEI~P 342 (442)
++||+= +|..|+.-+ =|.-+|-|+.
T Consensus 264 ~~i~~D-sG~~HlAaa-~g~P~v~lfg 288 (349)
T 3tov_A 264 LLITND-SGPMHVGIS-QGVPIVALYG 288 (349)
T ss_dssp EEEEES-SHHHHHHHT-TTCCEEEECS
T ss_pred EEEECC-CCHHHHHHh-cCCCEEEEEC
Confidence 999983 344444322 3555666653
No 41
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=27.05 E-value=79 Score=29.91 Aligned_cols=80 Identities=14% Similarity=0.221 Sum_probs=49.6
Q ss_pred HHHHHHHHcCCEEEEEcCCCC-C-----------CHHHHHHHHhcCCEEEeechhhhhhh---hccCCCcEEEEEeeCCC
Q 013451 281 SLVKMAEDIGFQVQVVRPDRT-S-----------ELAKIYRALNSSDVMVGVHGAAMTHF---LFMKPGSVFIQVIPLGT 345 (442)
Q Consensus 281 ev~~~l~~~Gf~v~v~~~~~~-~-----------s~~eq~~l~~~adVlVGvHGAgLtN~---lFm~pgs~vIEI~P~g~ 345 (442)
.+++.|+..|++|.+.+.... . +..+.-+++..||++|..-+.++.|. -.|+||+.+|-+---..
T Consensus 171 ~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~~~~~~~mk~g~~lin~a~g~~ 250 (300)
T 2rir_A 171 TIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSMILNQTVLSSMTPKTLILDLASRPG 250 (300)
T ss_dssp HHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSCCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChhhhCHHHHHhCCCCCEEEEEeCCCC
Confidence 356667777777777664310 0 01122346789999999888777543 24899999998863111
Q ss_pred CcccccchHhHHhhcCCcEE
Q 013451 346 DWAAETYYGEPARKLGLKYI 365 (442)
Q Consensus 346 ~~~~~~~y~~~A~~~Gl~Y~ 365 (442)
...+ ..+...|+.++
T Consensus 251 ----~~~~-~~a~~~G~~~i 265 (300)
T 2rir_A 251 ----GTDF-KYAEKQGIKAL 265 (300)
T ss_dssp ----SBCH-HHHHHHTCEEE
T ss_pred ----CcCH-HHHHHCCCEEE
Confidence 1225 66777888764
No 42
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=26.56 E-value=2.6e+02 Score=26.04 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=45.1
Q ss_pred cccc--CHHHHHHHHHHcCCEEEEEc-------------------------CCCCCCHHHHHHHHhcCCEEEeechhhhh
Q 013451 274 RAIT--NENSLVKMAEDIGFQVQVVR-------------------------PDRTSELAKIYRALNSSDVMVGVHGAAMT 326 (442)
Q Consensus 274 R~i~--Ne~ev~~~l~~~Gf~v~v~~-------------------------~~~~~s~~eq~~l~~~adVlVGvHGAgLt 326 (442)
|++- +-.++++.|.+.|+.+++.. ....+++.|-+++++.||++||.= +|..
T Consensus 195 k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~D-sg~~ 273 (348)
T 1psw_A 195 KRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTND-SGLM 273 (348)
T ss_dssp GSCCHHHHHHHHHHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEES-SHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHHHHhCCEEEecC-CHHH
Confidence 5555 55567777666577765531 112368999999999999999984 4445
Q ss_pred hhhccCCCcEEEEEeeCC
Q 013451 327 HFLFMKPGSVFIQVIPLG 344 (442)
Q Consensus 327 N~lFm~pgs~vIEI~P~g 344 (442)
|+.-+ =|.-+|-|+...
T Consensus 274 HlAaa-~g~P~v~lfg~t 290 (348)
T 1psw_A 274 HVAAA-LNRPLVALYGPS 290 (348)
T ss_dssp HHHHH-TTCCEEEEESSS
T ss_pred HHHHH-cCCCEEEEECCC
Confidence 55433 466667777543
No 43
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=26.18 E-value=2.9e+02 Score=26.15 Aligned_cols=91 Identities=21% Similarity=0.218 Sum_probs=58.7
Q ss_pred CCEEEEEEeCCC-ccccCHHHHHHHHHHcCC-EEEEEcCCC-----------CCCHHHHHHHHhcCCEEEeechhhhhh-
Q 013451 262 KPKLVILSRNGS-RAITNENSLVKMAEDIGF-QVQVVRPDR-----------TSELAKIYRALNSSDVMVGVHGAAMTH- 327 (442)
Q Consensus 262 ~prv~ii~R~~~-R~i~Ne~ev~~~l~~~Gf-~v~v~~~~~-----------~~s~~eq~~l~~~adVlVGvHGAgLtN- 327 (442)
.-+++++.-.+. | .++.+|.+.|+ +|.++.-+. ..++.+.-+ + .+|++|..-.+||..
T Consensus 122 ~k~vlvlGaGGaar------aia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~ 193 (282)
T 3fbt_A 122 NNICVVLGSGGAAR------AVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPK 193 (282)
T ss_dssp TSEEEEECSSTTHH------HHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTS
T ss_pred CCEEEEECCcHHHH------HHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCC
Confidence 347778876654 4 56777788887 777765320 011222112 3 899999888888642
Q ss_pred -------hhccCCCcEEEEEeeCCCCcccccchHhHHhhcCCcE
Q 013451 328 -------FLFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKY 364 (442)
Q Consensus 328 -------~lFm~pgs~vIEI~P~g~~~~~~~~y~~~A~~~Gl~Y 364 (442)
.-+++++.+|++++=-- ..+.|-..|+..|.+.
T Consensus 194 ~~~~pi~~~~l~~~~~v~DlvY~P----~~T~ll~~A~~~G~~~ 233 (282)
T 3fbt_A 194 EGESPVDKEVVAKFSSAVDLIYNP----VETLFLKYARESGVKA 233 (282)
T ss_dssp TTCCSSCHHHHTTCSEEEESCCSS----SSCHHHHHHHHTTCEE
T ss_pred CccCCCCHHHcCCCCEEEEEeeCC----CCCHHHHHHHHCcCeE
Confidence 22467889999987221 2467888899999864
No 44
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=26.14 E-value=2.4e+02 Score=23.56 Aligned_cols=39 Identities=5% Similarity=-0.105 Sum_probs=28.5
Q ss_pred CCCCCCEEEEEEeCCCccccCHHHHHHHHHHc-CCEEEEEcC
Q 013451 258 DQSKKPKLVILSRNGSRAITNENSLVKMAEDI-GFQVQVVRP 298 (442)
Q Consensus 258 ~~~~~prv~ii~R~~~R~i~Ne~ev~~~l~~~-Gf~v~v~~~ 298 (442)
-+..++.++++.|-. ...|.+.++++++++ .+.++++-.
T Consensus 19 ~~~~~~~i~~~G~~~--~~Kg~~~li~a~~~l~~~~l~i~G~ 58 (177)
T 2f9f_A 19 FKCYGDFWLSVNRIY--PEKRIELQLEVFKKLQDEKLYIVGW 58 (177)
T ss_dssp CCCCCSCEEEECCSS--GGGTHHHHHHHHHHCTTSCEEEEBC
T ss_pred cCCCCCEEEEEeccc--cccCHHHHHHHHHhCCCcEEEEEec
Confidence 356688899998875 456888999999886 566666543
No 45
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=25.97 E-value=33 Score=32.64 Aligned_cols=72 Identities=10% Similarity=0.171 Sum_probs=44.8
Q ss_pred CEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeec-hh---------hhhhhhccC
Q 013451 263 PKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVH-GA---------AMTHFLFMK 332 (442)
Q Consensus 263 prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvH-GA---------gLtN~lFm~ 332 (442)
+|++||. ++.-=.-...+.++|++.||+|.++++. .. .+....+++.|+||=.- ++ .|.. |..
T Consensus 5 ~~vLiV~--g~~~~~~a~~l~~aL~~~g~~V~~i~~~-~~--~~~~~~L~~yDvIIl~d~~~~~l~~~~~~~L~~--yV~ 77 (259)
T 3rht_A 5 TRVLYCG--DTSLETAAGYLAGLMTSWQWEFDYIPSH-VG--LDVGELLAKQDLVILSDYPAERMTAQAIDQLVT--MVK 77 (259)
T ss_dssp -CEEEEE--SSCTTTTHHHHHHHHHHTTCCCEEECTT-SC--BCSSHHHHTCSEEEEESCCGGGBCHHHHHHHHH--HHH
T ss_pred ceEEEEC--CCCchhHHHHHHHHHHhCCceEEEeccc-cc--ccChhHHhcCCEEEEcCCccccCCHHHHHHHHH--HHH
Confidence 5888885 3332233355788999999999998875 22 22334678999988653 22 2233 334
Q ss_pred CCcEEEEEe
Q 013451 333 PGSVFIQVI 341 (442)
Q Consensus 333 pgs~vIEI~ 341 (442)
.|..+|=+-
T Consensus 78 ~GGgLi~~g 86 (259)
T 3rht_A 78 AGCGLVMLG 86 (259)
T ss_dssp TTCEEEEEC
T ss_pred hCCeEEEec
Confidence 688877664
No 46
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=25.90 E-value=46 Score=31.66 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHH
Q 013451 278 NENSLVKMAEDIGFQVQVVRPDRTSELA 305 (442)
Q Consensus 278 Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~ 305 (442)
..+.|.+.++++||+|.+.+ +++..
T Consensus 47 D~~~L~~~f~~LgF~V~~~~---dlt~~ 71 (277)
T 1nw9_B 47 DCEKLRRRFSSLHFMVEVKG---DLTAK 71 (277)
T ss_dssp HHHHHHHHHHHTTEEEEEEE---SCCHH
T ss_pred HHHHHHHHHHHCCCEEEEEc---CCCHH
Confidence 44567888999999998765 45544
No 47
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=25.81 E-value=94 Score=32.11 Aligned_cols=98 Identities=10% Similarity=0.003 Sum_probs=68.9
Q ss_pred CCCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccC--CCcE
Q 013451 260 SKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMK--PGSV 336 (442)
Q Consensus 260 ~~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG-AgLtN~lFm~--pgs~ 336 (442)
..+++|-||.=- ..--|..|+.+.|++.|.++..+-+. ..+++| ++-+.+|++-|.++. ++..-+-+|. =|.-
T Consensus 218 ~~~~~VNIiG~~--~~~gD~~eik~lL~~~Gi~v~~~~~g-~~t~~e-i~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP 293 (492)
T 3u7q_A 218 STPYDVAIIGDY--NIGGDAWSSRILLEEMGLRCVAQWSG-DGSISE-IELTPKVKLNLVHCYRSMNYISRHMEEKYGIP 293 (492)
T ss_dssp CCTTEEEEEEEC--CBTTTTHHHHHHHHHTTCEEEEEEET-TCCHHH-HHHGGGCSEEEESCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCcEEEECCC--CChhhHHHHHHHHHHCCCeEEEEeCC-CCCHHH-HHhhhcCcEEEEEChHHHHHHHHHHHHHhCCc
Confidence 445677777632 22346689999999999999876554 456555 677789999887753 5655555664 3777
Q ss_pred EEEEeeCCCCcccccchHhHHhhcCC
Q 013451 337 FIQVIPLGTDWAAETYYGEPARKLGL 362 (442)
Q Consensus 337 vIEI~P~g~~~~~~~~y~~~A~~~Gl 362 (442)
.+++-|+|++- ...++..+|+..|.
T Consensus 294 ~i~~~p~G~~~-T~~~L~~ia~~~g~ 318 (492)
T 3u7q_A 294 WMEYNFFGPTK-TIESLRAIAAKFDE 318 (492)
T ss_dssp EEECCCSSHHH-HHHHHHHHHTTSCH
T ss_pred eEecCccCHHH-HHHHHHHHHHHhCC
Confidence 88888888542 35588889988884
No 48
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=25.58 E-value=43 Score=31.95 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=32.6
Q ss_pred hcCCEEEeechhhhhhh------hccCCCcEEEEEeeCCCCcccccchHhHHhhcCCc
Q 013451 312 NSSDVMVGVHGAAMTHF------LFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLK 363 (442)
Q Consensus 312 ~~adVlVGvHGAgLtN~------lFm~pgs~vIEI~P~g~~~~~~~~y~~~A~~~Gl~ 363 (442)
..+|++|..-++|+..- -+++||++|+.++-.- ..+.+-..|+..|++
T Consensus 186 ~~aDiIInaTp~gm~~~~~~l~~~~l~~~~~V~DlvY~P----~~T~ll~~A~~~G~~ 239 (281)
T 3o8q_A 186 QSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYGK----GYTVFNQWARQHGCA 239 (281)
T ss_dssp SCEEEEEECSCCCC----CSCCGGGEEEEEEEEESCCCS----SCCHHHHHHHHTTCS
T ss_pred CCCCEEEEcCcCCCCCCCCCCCHHHhCcCCEEEEecCCC----ccCHHHHHHHHCCCC
Confidence 67999998888876431 2456788888886211 235677788889986
No 49
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=25.57 E-value=1.7e+02 Score=25.16 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=38.3
Q ss_pred CCCCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhc--CCEE
Q 013451 259 QSKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNS--SDVM 317 (442)
Q Consensus 259 ~~~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~--adVl 317 (442)
..++|++++..=.+.-.=+...-+...++..||+|+.+.. ..+.++.++.+.. +|++
T Consensus 15 ~~~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~--~~p~e~lv~aa~~~~~diV 73 (161)
T 2yxb_A 15 PRRRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGL--RQTPEQVAMAAVQEDVDVI 73 (161)
T ss_dssp -CCSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCS--BCCHHHHHHHHHHTTCSEE
T ss_pred cCCCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC--CCCHHHHHHHHHhcCCCEE
Confidence 3467888876655544444445567778999999986554 4788888877764 4543
No 50
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=25.35 E-value=65 Score=31.38 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=35.6
Q ss_pred CEEEEEEeCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEE
Q 013451 263 PKLVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMV 318 (442)
Q Consensus 263 prv~ii~R~~~-R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlV 318 (442)
.-+++.|..|+ +++.+ ++.+.+++.|+++.+++.. ..+..+....+.++|.+|
T Consensus 259 ~~i~~~S~~gnT~~la~--~i~~~l~~~g~~v~~~~~~-~~~~~~~~~~l~~~d~ii 312 (404)
T 2ohh_A 259 VTVIYDTMHGSTRKMAH--AIAEGAMSEGVDVRVYCLH-EDDRSEIVKDILESGAIA 312 (404)
T ss_dssp EEEEECCSSSHHHHHHH--HHHHHHHTTTCEEEEEETT-TSCHHHHHHHHHTCSEEE
T ss_pred EEEEEECCChHHHHHHH--HHHHHHHhCCCeEEEEECC-CCCHHHHHHHHHHCCEEE
Confidence 34444554443 44432 3555566679999998876 577888888899999876
No 51
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=25.15 E-value=1.3e+02 Score=29.07 Aligned_cols=61 Identities=26% Similarity=0.175 Sum_probs=40.7
Q ss_pred CCCCEEEEEEeCCC-------ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEeech
Q 013451 260 SKKPKLVILSRNGS-------RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG 322 (442)
Q Consensus 260 ~~~prv~ii~R~~~-------R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlVGvHG 322 (442)
..+|+|.+....+. ..-.+..++++++++.|.+++++... .+..+.-+++..+|-||=.=|
T Consensus 28 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~--~~~~~i~~~l~~~dglil~GG 95 (315)
T 1l9x_A 28 AKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLD--LTEKDYEILFKSINGILFPGG 95 (315)
T ss_dssp CCCCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSS--CCHHHHHHHHHHSSEEEECCC
T ss_pred CCCCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecC--CCHHHHHHHHhcCCEEEEeCC
Confidence 45899888876532 12235567999999999999988764 244444455677787664444
No 52
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=24.98 E-value=51 Score=28.84 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=44.0
Q ss_pred CCCCEEEEEEeCCC-----ccccCHHHHHHHHHHcCCEEEEE--cCCCCCCHHHHHHHH--hcCCEEEeechhhhhh
Q 013451 260 SKKPKLVILSRNGS-----RAITNENSLVKMAEDIGFQVQVV--RPDRTSELAKIYRAL--NSSDVMVGVHGAAMTH 327 (442)
Q Consensus 260 ~~~prv~ii~R~~~-----R~i~Ne~ev~~~l~~~Gf~v~v~--~~~~~~s~~eq~~l~--~~adVlVGvHGAgLtN 327 (442)
-++||+.+|+=.+. ..=.|-.-+.+.|++.|+++... -++. -.+.+.++.. ..+|++|.-=|.|.+-
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~ 80 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGIAP 80 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSSST
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 35788888875532 34456667889999999987532 2443 4566666543 3799999998888764
No 53
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=24.88 E-value=1.6e+02 Score=28.82 Aligned_cols=91 Identities=18% Similarity=0.219 Sum_probs=55.1
Q ss_pred ccccCHHHHHHHHHHcCCEEEEEcCCC----CCCHHHHHH----------HHhcCCEEEeechhhhhhhhccCCCcEEEE
Q 013451 274 RAITNENSLVKMAEDIGFQVQVVRPDR----TSELAKIYR----------ALNSSDVMVGVHGAAMTHFLFMKPGSVFIQ 339 (442)
Q Consensus 274 R~i~Ne~ev~~~l~~~Gf~v~v~~~~~----~~s~~eq~~----------l~~~adVlVGvHGAgLtN~lFm~pgs~vIE 339 (442)
||+-=-.+-++.|.+.|++|.+ |... ..+=.+-.+ ++ +||++|++-----...-.++||..+|=
T Consensus 14 ~Rv~l~P~~v~~L~~~g~~v~v-e~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il~vk~p~~~~~~~l~~~~~~~~ 91 (369)
T 2eez_A 14 NRVALTPGGVESLVRRGHTVLV-ERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVVKVKEPLPEEYGFLREGLILFT 91 (369)
T ss_dssp CCCSSCHHHHHHHHHTTCEEEE-ETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEECSSCCCGGGGGGCCTTCEEEE
T ss_pred ceeCcCHHHHHHHHhCCCEEEE-eCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEEEECCCCHHHHhhcCCCcEEEE
Confidence 5555455677788889999966 3321 223222222 56 899999887554445567789988765
Q ss_pred EeeCCCCcccccchHhHHhhcCCcEEEEEec
Q 013451 340 VIPLGTDWAAETYYGEPARKLGLKYIGYTIL 370 (442)
Q Consensus 340 I~P~g~~~~~~~~y~~~A~~~Gl~Y~~y~i~ 370 (442)
..-.+. ....-......|+..++|+..
T Consensus 92 ~~~~~~----~~~~~~~l~~~gi~~ia~e~~ 118 (369)
T 2eez_A 92 YLHLAA----DRGLTEAMLRSGVTGIAYETV 118 (369)
T ss_dssp CCCGGG----CHHHHHHHHHHTCEEEEGGGC
T ss_pred EecccC----CHHHHHHHHHCCCeEEEeecc
Confidence 543331 222333456788888776544
No 54
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=24.81 E-value=1.6e+02 Score=27.80 Aligned_cols=48 Identities=19% Similarity=0.113 Sum_probs=35.3
Q ss_pred hcCCEEEeechhhhhhh------hccCCCcEEEEEeeCCCCcccccchHhHHhhcCCc
Q 013451 312 NSSDVMVGVHGAAMTHF------LFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLK 363 (442)
Q Consensus 312 ~~adVlVGvHGAgLtN~------lFm~pgs~vIEI~P~g~~~~~~~~y~~~A~~~Gl~ 363 (442)
..+|++|..-.+|+..- -+++++++|++++-.- ..+.|-..|+..|.+
T Consensus 180 ~~~DivInaTp~gm~~~~~~i~~~~l~~~~~V~DlvY~P----~~T~ll~~A~~~G~~ 233 (272)
T 3pwz_A 180 QSFDIVVNATSASLTADLPPLPADVLGEAALAYELAYGK----GLTPFLRLAREQGQA 233 (272)
T ss_dssp CCCSEEEECSSGGGGTCCCCCCGGGGTTCSEEEESSCSC----CSCHHHHHHHHHSCC
T ss_pred cCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeecCC----CCCHHHHHHHHCCCC
Confidence 67999999988887532 2467889999886221 245677888999986
No 55
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=23.81 E-value=83 Score=27.67 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCHH---HHHHHHhcCC--------EEEeechhhhhhhhccCCC
Q 013451 279 ENSLVKMAEDIGFQVQVVRPDRTSELA---KIYRALNSSD--------VMVGVHGAAMTHFLFMKPG 334 (442)
Q Consensus 279 e~ev~~~l~~~Gf~v~v~~~~~~~s~~---eq~~l~~~ad--------VlVGvHGAgLtN~lFm~pg 334 (442)
.+.|.+.++++||+|.+.+ +++.. +.++-++.-| |+|--||-- +.++...|
T Consensus 57 ~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~~--g~i~g~D~ 118 (164)
T 1qtn_A 57 AGALTTTFEELHFEIKPHD---DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDK--GIIYGTDG 118 (164)
T ss_dssp HHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHSCCTTCSCEEEEEESCEET--TEEECTTS
T ss_pred HHHHHHHHHHCCCEEEEec---CCCHHHHHHHHHHHHHhhccCCCEEEEEeCCCCCC--CEEEeeCC
Confidence 3457788889999998865 45544 4444444444 456668753 56666655
No 56
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=23.80 E-value=1.3e+02 Score=26.45 Aligned_cols=69 Identities=13% Similarity=0.249 Sum_probs=45.3
Q ss_pred CCCCCEEEEEEeCC----------CccccCHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHHH-Hhc--CCEEEeechh
Q 013451 259 QSKKPKLVILSRNG----------SRAITNENSLVKMAEDIGFQVQVVR--PDRTSELAKIYRA-LNS--SDVMVGVHGA 323 (442)
Q Consensus 259 ~~~~prv~ii~R~~----------~R~i~Ne~ev~~~l~~~Gf~v~v~~--~~~~~s~~eq~~l-~~~--adVlVGvHGA 323 (442)
..++||+.+|+=.. ...=.|-.-+.+.|++.|+++.... ++..-.+.+.++. ..+ +|++|.-=|.
T Consensus 12 ~~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~ 91 (178)
T 2pjk_A 12 APKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp -CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred CCCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 45688998887653 2333445567888999999876433 3322345666543 444 8999999888
Q ss_pred hhhh
Q 013451 324 AMTH 327 (442)
Q Consensus 324 gLtN 327 (442)
|.+-
T Consensus 92 s~g~ 95 (178)
T 2pjk_A 92 GYSP 95 (178)
T ss_dssp SSST
T ss_pred CCCC
Confidence 8764
No 57
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=23.53 E-value=61 Score=27.95 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCHHH---HHHHHhcCC--------EEEeechhhhhhhhccCCC
Q 013451 279 ENSLVKMAEDIGFQVQVVRPDRTSELAK---IYRALNSSD--------VMVGVHGAAMTHFLFMKPG 334 (442)
Q Consensus 279 e~ev~~~l~~~Gf~v~v~~~~~~~s~~e---q~~l~~~ad--------VlVGvHGAgLtN~lFm~pg 334 (442)
.+.+.+.++++||+|.+.+ +++..| .++-++.-| ++|--||- -+.++...|
T Consensus 43 ~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~--~g~i~g~D~ 104 (146)
T 2dko_A 43 AANLRETFRNLKYEVRNKN---DLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGE--EGIIFGTNG 104 (146)
T ss_dssp HHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHSCCTTEEEEEEEEESCEE--TTEEEETTE
T ss_pred HHHHHHHHHHCCCEEEEee---CCCHHHHHHHHHHHHHhhcCCCCeEEEEeccCCC--CCEEEEeCC
Confidence 3467788889999998865 455444 444444433 45556775 345555554
No 58
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=23.26 E-value=54 Score=25.27 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=18.4
Q ss_pred ccccCHHHHHHHHHHcCCEEE
Q 013451 274 RAITNENSLVKMAEDIGFQVQ 294 (442)
Q Consensus 274 R~i~Ne~ev~~~l~~~Gf~v~ 294 (442)
++=+|.+++++.|++.||+|+
T Consensus 58 ~~gid~d~l~~~L~~~g~~~~ 78 (81)
T 2fi0_A 58 LAGTPMDKIVRTLEANGYEVI 78 (81)
T ss_dssp HHTCCHHHHHHHHHHTTCEEE
T ss_pred HcCCCHHHHHHHHHHcCCEee
Confidence 455789999999999999986
No 59
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=22.79 E-value=91 Score=29.72 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=42.3
Q ss_pred CCCEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHH---HHHHHhc------CC---EEEeechhhhhhh
Q 013451 261 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAK---IYRALNS------SD---VMVGVHGAAMTHF 328 (442)
Q Consensus 261 ~~prv~ii~R~~~R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~e---q~~l~~~------ad---VlVGvHGAgLtN~ 328 (442)
++-..+||++.+ .+.+.|.+.++++||+|.+.+ +++..| .++-+++ +| ++|--||- -+.
T Consensus 42 ~rG~~LIinn~~----~D~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~~dh~~~d~~v~~ilSHG~--~g~ 112 (272)
T 3h11_A 42 PLGICLIIDCIG----NETELLRDTFTSLGYEVQKFL---HLSMHGISQILGQFACMPEHRDYDSFVCVLVSRGG--SQS 112 (272)
T ss_dssp SSEEEEEEESSC----CCCSHHHHHHHHHTEEEEEEE---SCBHHHHHHHHHHHHTCGGGGGCSEEEEEEEEEEE--TTE
T ss_pred cceEEEEECCch----HHHHHHHHHHHHCCCEEEEee---CCCHHHHHHHHHHHHhccccCCCCEEEEEEEcCCC--CCe
Confidence 344567888765 355678999999999998865 455444 3333332 44 35566886 366
Q ss_pred hccCCCc
Q 013451 329 LFMKPGS 335 (442)
Q Consensus 329 lFm~pgs 335 (442)
++...|.
T Consensus 113 i~g~D~~ 119 (272)
T 3h11_A 113 VYGVDQT 119 (272)
T ss_dssp ECBTSCC
T ss_pred EEEEcCC
Confidence 6666653
No 60
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=22.02 E-value=80 Score=29.49 Aligned_cols=52 Identities=15% Similarity=0.317 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCH---HHHHHHHhcCC--------EEEeechhhhhhhhccCCC
Q 013451 278 NENSLVKMAEDIGFQVQVVRPDRTSEL---AKIYRALNSSD--------VMVGVHGAAMTHFLFMKPG 334 (442)
Q Consensus 278 Ne~ev~~~l~~~Gf~v~v~~~~~~~s~---~eq~~l~~~ad--------VlVGvHGAgLtN~lFm~pg 334 (442)
+.+.|.+.++++||+|++.+ +++. .+.++-+..-| +++.-||- -+.++...|
T Consensus 42 D~~~l~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~~~~~~d~~v~~~lsHG~--~g~i~~~D~ 104 (250)
T 2j32_A 42 DAANLRETFRNLKYEVRNKN---DLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGE--EGIIFGTNG 104 (250)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE--TTEEEETTE
T ss_pred HHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHHHHHhhccCCCEEEEEECCCCC--CCeEEecCC
Confidence 44567888999999998765 3554 44455554433 44555886 355555554
No 61
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=21.65 E-value=1.2e+02 Score=26.42 Aligned_cols=39 Identities=10% Similarity=0.143 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCC-C-----HHHHHHHHhcCCEEEee
Q 013451 280 NSLVKMAEDIGFQVQVVRPDRTS-E-----LAKIYRALNSSDVMVGV 320 (442)
Q Consensus 280 ~ev~~~l~~~Gf~v~v~~~~~~~-s-----~~eq~~l~~~adVlVGv 320 (442)
+++.+.|++.|++|. .|..+. + +..=++.+.+||++|+.
T Consensus 30 ~~l~~~l~~~G~~v~--~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ 74 (161)
T 2f62_A 30 NKVRELLKKENVMPL--IPTDNEATEALDIRQKNIQMIKDCDAVIAD 74 (161)
T ss_dssp HHHHHHHHTTTCEEE--CTTTTCCSSHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHCCCEEE--CCCccCcchHHHHHHHHHHHHHhCCEEEEE
Confidence 577888999999764 354221 2 33347889999999876
No 62
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=21.19 E-value=71 Score=31.37 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=36.0
Q ss_pred EEEEEEeCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEE
Q 013451 264 KLVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMV 318 (442)
Q Consensus 264 rv~ii~R~~~-R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlV 318 (442)
-+++.|..|+ +++.+ ++.+.+++.|.++.+++.. ..++.+....+.++|.+|
T Consensus 260 ~iiy~S~~GnT~~la~--~i~~~l~~~g~~v~~~~l~-~~~~~~~~~~l~~~D~ii 312 (414)
T 2q9u_A 260 TVVLDSMYGTTHRMAL--ALLDGARSTGCETVLLEMT-SSDITKVALHTYDSGAVA 312 (414)
T ss_dssp EEEECCSSSHHHHHHH--HHHHHHHHTTCEEEEEEGG-GCCHHHHHHHHHTCSEEE
T ss_pred EEEEECCCchHHHHHH--HHHHHHHhCCCeEEEEEcC-cCCHHHHHHHHHhCCEEE
Confidence 3444455443 55543 3566667779999888876 577888788899999876
No 63
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=21.11 E-value=71 Score=28.49 Aligned_cols=52 Identities=23% Similarity=0.440 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHH---HHHHHHhcCC--------EEEeechhhhhhhhccCCC
Q 013451 278 NENSLVKMAEDIGFQVQVVRPDRTSELA---KIYRALNSSD--------VMVGVHGAAMTHFLFMKPG 334 (442)
Q Consensus 278 Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~---eq~~l~~~ad--------VlVGvHGAgLtN~lFm~pg 334 (442)
..+.|.+.++++||+|.+.+ +++.. +.++-+++-| |+|--||-. +.++...|
T Consensus 70 D~~~L~~~F~~LgF~V~v~~---dlt~~em~~~l~~~s~~dh~~~dc~vvvilSHG~~--g~I~g~D~ 132 (173)
T 2ql9_A 70 DAEALFKCFRSLGFDVIVYN---DCSCAKMQDLLKKASEEDHTNAACFACILLSHGEE--NVIYGKDG 132 (173)
T ss_dssp HHHHHHHHHHHHTEEEEEEE---SCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEET--TEEEETTE
T ss_pred HHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHHHHHhhccCCCeEEEeecCCCCC--CEEEEcCC
Confidence 34567888889999998865 45544 4555555555 566668753 56666555
No 64
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=20.81 E-value=93 Score=30.19 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=39.2
Q ss_pred CEEEEEEeC--CC-ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEE-e--echhh
Q 013451 263 PKLVILSRN--GS-RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMV-G--VHGAA 324 (442)
Q Consensus 263 prv~ii~R~--~~-R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~~~adVlV-G--vHGAg 324 (442)
.+++++-.+ |+ +++.+ ++.+.+++.|.++.+.+.. ..+..+....+.++|++| | .+|.+
T Consensus 253 ~kv~i~y~S~~Gnt~~lA~--~i~~~l~~~g~~v~~~~~~-~~~~~~~~~~~~~~d~ii~gsp~~~~~ 317 (402)
T 1e5d_A 253 NKVVIFYDSMWHSTEKMAR--VLAESFRDEGCTVKLMWCK-ACHHSQIMSEISDAGAVIVGSPTHNNG 317 (402)
T ss_dssp SEEEEEECCSSSHHHHHHH--HHHHHHHHTTCEEEEEETT-TSCHHHHHHHHHTCSEEEEECCCBTTB
T ss_pred CcEEEEEECCChhHHHHHH--HHHHHHHhCCCeEEEEECC-CCCHHHHHHHHHHCCEEEEECCccCCC
Confidence 455555444 33 44432 3556677779999888876 567888888889999876 2 36664
No 65
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=20.65 E-value=3.8e+02 Score=25.54 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=49.9
Q ss_pred EEEEEEeCCC---ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH--hcCCEEEeechhhhhhh----hccCCC
Q 013451 264 KLVILSRNGS---RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRAL--NSSDVMVGVHGAAMTHF----LFMKPG 334 (442)
Q Consensus 264 rv~ii~R~~~---R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~~s~~eq~~l~--~~adVlVGvHGAgLtN~----lFm~pg 334 (442)
++++|-...+ +...-.+++.+.|++.|+++.+...+......++++.. ..+|++|.+=|=|--|. +.-.+.
T Consensus 26 ~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l~~~~~ 105 (337)
T 2qv7_A 26 RARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPN 105 (337)
T ss_dssp EEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHHHTTCSS
T ss_pred eEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchHHHHHHHHHHhCCC
Confidence 4555554333 21122357888899999998887654222444444433 45799999988876544 322333
Q ss_pred cEEEEEeeCC
Q 013451 335 SVFIQVIPLG 344 (442)
Q Consensus 335 s~vIEI~P~g 344 (442)
..-|=++|.|
T Consensus 106 ~~pl~iIP~G 115 (337)
T 2qv7_A 106 RPKLGVIPMG 115 (337)
T ss_dssp CCEEEEEECS
T ss_pred CCcEEEecCC
Confidence 4567789999
No 66
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=20.47 E-value=1.9e+02 Score=26.49 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=55.4
Q ss_pred EEEEEEeCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCC--CCHHHH--------HHHHhcCCEEEeechhhhh----h-
Q 013451 264 KLVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPDRT--SELAKI--------YRALNSSDVMVGVHGAAMT----H- 327 (442)
Q Consensus 264 rv~ii~R~~~-R~i~Ne~ev~~~l~~~Gf~v~v~~~~~~--~s~~eq--------~~l~~~adVlVGvHGAgLt----N- 327 (442)
++++|...+- | .++..|.+.|++|.+.+.... ..+.++ -++ .++|++|..-+.++. .
T Consensus 118 ~v~iiG~G~~g~------~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~~~~~~~~-~~~Divi~~tp~~~~~~~~~~ 190 (263)
T 2d5c_A 118 PALVLGAGGAGR------AVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVPLEKA-REARLLVNATRVGLEDPSASP 190 (263)
T ss_dssp CEEEECCSHHHH------HHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCEECCGGGG-GGCSEEEECSSTTTTCTTCCS
T ss_pred eEEEECCcHHHH------HHHHHHHHCCCEEEEEECCHHHHHHHHHHhccchhhHhhc-cCCCEEEEccCCCCCCCCCCC
Confidence 7888886432 3 356667777887777654310 011111 123 689999999888863 1
Q ss_pred --hhccCCCcEEEEEeeCCCCcccccchHhHHhhcCCcEE
Q 013451 328 --FLFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKYI 365 (442)
Q Consensus 328 --~lFm~pgs~vIEI~P~g~~~~~~~~y~~~A~~~Gl~Y~ 365 (442)
.-++++|+.|+++. ++ . ..+.+...|+..|.+++
T Consensus 191 l~~~~l~~g~~viD~~-~~--p-~~t~l~~~a~~~g~~~v 226 (263)
T 2d5c_A 191 LPAELFPEEGAAVDLV-YR--P-LWTRFLREAKAKGLKVQ 226 (263)
T ss_dssp SCGGGSCSSSEEEESC-CS--S-SSCHHHHHHHHTTCEEE
T ss_pred CCHHHcCCCCEEEEee-cC--C-cccHHHHHHHHCcCEEE
Confidence 23578999999864 22 1 12235566777887664
No 67
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=20.40 E-value=77 Score=30.11 Aligned_cols=51 Identities=27% Similarity=0.438 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCC---HHHHHHHHhcCC--------EEEeechhhhhhhhccCCC
Q 013451 279 ENSLVKMAEDIGFQVQVVRPDRTSE---LAKIYRALNSSD--------VMVGVHGAAMTHFLFMKPG 334 (442)
Q Consensus 279 e~ev~~~l~~~Gf~v~v~~~~~~~s---~~eq~~l~~~ad--------VlVGvHGAgLtN~lFm~pg 334 (442)
.+.|.+.++++||+|.+.+ +++ +.+.++-+++-| +++.-||- -|.++...+
T Consensus 58 a~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~~~~~dh~~~d~~v~~~lsHG~--~~~i~~~D~ 119 (272)
T 1m72_A 58 SDNLSKVLKTLGFKVTVFP---NLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGE--LGMLYAKDT 119 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE--TTEEECSSS
T ss_pred HHHHHHHHHHCCCEEEEec---CcCHHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC--CCEEEecCC
Confidence 3467888999999998876 355 444455554443 34555874 577776666
No 68
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=20.33 E-value=1.5e+02 Score=25.73 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=44.4
Q ss_pred CCCCEEEEEEeCCCc-ccc--CHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHHHH-h--cCCEEEeechhhhhh
Q 013451 260 SKKPKLVILSRNGSR-AIT--NENSLVKMAEDIGFQVQVVR--PDRTSELAKIYRAL-N--SSDVMVGVHGAAMTH 327 (442)
Q Consensus 260 ~~~prv~ii~R~~~R-~i~--Ne~ev~~~l~~~Gf~v~v~~--~~~~~s~~eq~~l~-~--~adVlVGvHGAgLtN 327 (442)
.++||+-+|+=.... ++. |-.-+.+.|++.|+++.... ++..-.+.+.++.. . ++|++|.-=|.|.+.
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~ 86 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITK 86 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSST
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCC
Confidence 357888888754432 344 44567888999999875432 33123466666544 4 699999999988763
No 69
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=20.12 E-value=90 Score=27.72 Aligned_cols=70 Identities=23% Similarity=0.223 Sum_probs=45.7
Q ss_pred CCEEEEEEeC-----CCccccCHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHH-HHhcCCEEEeechhhhhhhhcc
Q 013451 262 KPKLVILSRN-----GSRAITNENSLVKMAEDIGFQVQVVR--PDRTSELAKIYR-ALNSSDVMVGVHGAAMTHFLFM 331 (442)
Q Consensus 262 ~prv~ii~R~-----~~R~i~Ne~ev~~~l~~~Gf~v~v~~--~~~~~s~~eq~~-l~~~adVlVGvHGAgLtN~lFm 331 (442)
++|+.+|+=. |.+.=.|-.-+.+.|++.|+++.... ++..-.+.+.++ +..++|++|.-=|.|.|.-=+.
T Consensus 3 ~~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~D~T 80 (172)
T 3kbq_A 3 AKNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFDDMT 80 (172)
T ss_dssp -CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTTCCH
T ss_pred CCEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCcccch
Confidence 3666666643 33445566778999999999876433 332234566554 3457999999999998764333
Done!