Query 013452
Match_columns 442
No_of_seqs 116 out of 303
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:59:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 5E-101 1E-105 754.3 25.4 397 18-442 2-408 (408)
2 PF03547 Mem_trans: Membrane t 100.0 1.3E-50 2.7E-55 415.7 29.1 378 27-434 2-385 (385)
3 COG0679 Predicted permeases [G 100.0 2.7E-28 5.8E-33 244.7 21.2 308 24-440 2-310 (311)
4 TIGR00946 2a69 he Auxin Efflux 100.0 4.8E-27 1E-31 236.4 22.8 315 23-436 2-319 (321)
5 PRK09903 putative transporter 99.9 3E-24 6.6E-29 215.6 24.2 305 23-437 4-310 (314)
6 TIGR00841 bass bile acid trans 97.2 0.0014 2.9E-08 65.4 8.8 110 323-439 11-122 (286)
7 TIGR00841 bass bile acid trans 94.6 0.58 1.3E-05 46.6 12.7 133 26-177 136-272 (286)
8 COG0385 Predicted Na+-dependen 94.5 0.16 3.5E-06 51.2 8.4 109 323-438 41-151 (319)
9 PF01758 SBF: Sodium Bile acid 93.1 0.4 8.7E-06 44.5 8.0 108 325-439 3-113 (187)
10 TIGR00832 acr3 arsenical-resis 89.8 3.2 6.9E-05 42.3 11.0 138 285-439 13-158 (328)
11 PF13593 DUF4137: SBF-like CPA 88.5 2.8 6E-05 42.4 9.4 140 285-438 4-147 (313)
12 TIGR00832 acr3 arsenical-resis 80.7 3.5 7.7E-05 41.9 6.1 109 32-144 182-297 (328)
13 COG0385 Predicted Na+-dependen 77.7 9.6 0.00021 38.7 8.0 44 91-134 224-267 (319)
14 PF05684 DUF819: Protein of un 71.4 10 0.00023 39.4 6.6 85 34-121 28-116 (378)
15 PRK12460 2-keto-3-deoxyglucona 54.7 58 0.0013 33.0 8.1 103 30-141 165-268 (312)
16 PF03390 2HCT: 2-hydroxycarbox 42.7 2.9E+02 0.0064 29.2 11.4 137 26-172 48-201 (414)
17 PF13593 DUF4137: SBF-like CPA 42.3 1.1E+02 0.0023 31.0 8.0 105 29-140 162-273 (313)
18 PF05684 DUF819: Protein of un 39.0 76 0.0016 33.1 6.5 104 32-146 241-345 (378)
19 TIGR00783 ccs citrate carrier 38.6 1.4E+02 0.0031 30.7 8.2 81 34-117 207-293 (347)
20 PRK11677 hypothetical protein; 35.8 41 0.00089 29.9 3.3 22 96-117 6-27 (134)
21 PF03812 KdgT: 2-keto-3-deoxyg 31.4 1.5E+02 0.0033 30.1 6.9 71 71-149 52-123 (314)
22 PF03812 KdgT: 2-keto-3-deoxyg 29.9 1.8E+02 0.0038 29.6 7.0 108 28-144 168-277 (314)
23 PF06295 DUF1043: Protein of u 29.1 54 0.0012 28.7 3.0 22 96-117 2-23 (128)
24 COG2323 Predicted membrane pro 28.5 1.8E+02 0.0038 28.2 6.6 80 31-117 8-87 (224)
25 PF06305 DUF1049: Protein of u 27.1 92 0.002 23.5 3.6 26 90-115 18-43 (68)
26 TIGR03082 Gneg_AbrB_dup membra 26.5 1.6E+02 0.0035 26.4 5.7 46 72-117 55-104 (156)
27 PF03601 Cons_hypoth698: Conse 26.2 76 0.0016 32.1 3.8 134 34-186 29-170 (305)
28 COG3763 Uncharacterized protei 25.8 1.1E+02 0.0025 24.0 3.8 25 88-112 2-26 (71)
29 COG0475 KefB Kef-type K+ trans 25.8 2E+02 0.0042 30.1 6.9 65 54-119 264-329 (397)
30 PRK05326 potassium/proton anti 24.8 3.9E+02 0.0083 29.2 9.3 100 37-142 250-351 (562)
31 COG1346 LrgB Putative effector 23.9 3.8E+02 0.0081 26.1 7.8 84 53-141 53-137 (230)
32 COG3493 CitS Na+/citrate sympo 23.3 5.4E+02 0.012 27.1 9.2 104 36-144 81-195 (438)
33 TIGR03802 Asp_Ala_antiprt aspa 22.7 1.4E+02 0.0029 32.9 5.2 131 29-169 10-165 (562)
34 PRK12460 2-keto-3-deoxyglucona 22.5 2.3E+02 0.0051 28.8 6.4 65 72-149 53-118 (312)
35 PRK05274 2-keto-3-deoxyglucona 22.2 99 0.0021 31.6 3.8 100 32-139 174-274 (326)
36 PF03390 2HCT: 2-hydroxycarbox 21.7 2E+02 0.0043 30.4 6.0 103 48-152 286-395 (414)
37 PF02340 PRRSV_Env: PRRSV puta 20.5 3E+02 0.0064 26.3 6.1 111 2-123 90-225 (234)
38 COG4129 Predicted membrane pro 20.1 3.3E+02 0.0072 27.9 7.1 94 23-118 49-151 (332)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=4.7e-101 Score=754.29 Aligned_cols=397 Identities=43% Similarity=0.784 Sum_probs=340.9
Q ss_pred chhHHHHHHHH--HHHHHHHHHHHHHHHHHhhccCCCChhhhhhhhhhhHhhhhhHHHHHhhhcccchhhhhhhhHHHHH
Q 013452 18 ESLLGTVKIAV--LPIAKVFTICFLGFLMASKYVNILPASGRKLLNGLVFTLLLPCLIFSQLGQAITLQKMIEWWFIPIN 95 (442)
Q Consensus 18 ~~~~~li~~A~--~pvlkVlli~~~G~~lA~~r~giL~~~~~k~lS~lv~~~FlP~LiFskla~~lt~~~l~~~w~ipv~ 95 (442)
|++++++-.|. +|++||++++.+|+++|+++.|+|++|+||.+|++||++|+|||+|+|+|+++|.|++.+||+||+|
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 46777777777 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcceEEEEEeccCCCchHHHHHHHhhcCCCCCCCChhhHhhhhhHHHHHHHHHhhh
Q 013452 96 VVLGTISGSLIGLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVLIAALCRDPSNPFAEPETCSTQMTAYISFGQWVGAI 175 (442)
Q Consensus 96 ~ll~~~ig~~lg~l~~~~~~~P~~~r~~v~~a~~fgN~~sLPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~i~~~~~~~ 175 (442)
+++++++|.++||+++|++|+|+++||++++||+|||+||||+++++|+|++++.||||+|.|.+||++|++++|++|++
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeeecccCCCCCCCc-cccCCCCCc-----c-CCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcCccccc
Q 013452 176 ILYTYVFHMLAPPPEGTF-DIDEESLPI-----K-NSSKDATPAPEQIPLLTEEAEPKDSNNPKRGKDATPATEQIPLLI 248 (442)
Q Consensus 176 ~~ws~g~~~l~~~~~~~~-~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (442)
++|+|+||++.++..+.. ..++++... . .+.+.+++++.++++.. +
T Consensus 162 l~wty~Y~~~~~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~~~~~~~k~~ll~---------------------------~ 214 (408)
T KOG2722|consen 162 LRWTYVYRMLLPPNLELMSALKESPVEALLESVPQPSVESDEDSTCKTLLLA---------------------------S 214 (408)
T ss_pred EEEEEEeeeecCCchhhhhcCChhhhhhhhhccCCCCccccccccccccccc---------------------------c
Confidence 999999998887642111 111110000 0 00000000111111110 0
Q ss_pred cccCCCCCCCCCCchhHHHHHHHHHHhhhccccCchHHHHHHHHhhccchhhhhhhccCCCcchhHHHHHHHhccchhhH
Q 013452 249 EEAEPKDSKNPKRGKIAEVLIFIYEKLKLKQILQPPIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPC 328 (442)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pp~iaailg~iigliPpLk~lff~~~~pL~~l~ds~~~lG~a~VPl 328 (442)
++.++.+. ..++.+.+++.+.+..+.+++++++||++|+++|+++|.|||||+++|++++|+++++|+++.+|+++|||
T Consensus 215 ~en~~~~~-~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~ 293 (408)
T KOG2722|consen 215 KENRNNQV-VGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPC 293 (408)
T ss_pred cccCCCce-eeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchh
Confidence 01111000 01222222333333345568999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCCCCCCCCchhhHhHHHHHHHhhhhhHHHHHHHHhhcCCccCCChHHHHHHHhcccCchHHHHHHHHhh
Q 013452 329 ILLALGGNLVDGPGSAKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSL 408 (442)
Q Consensus 329 ~llvLGa~La~gp~~~~~~~~~iv~i~~~RliilPiigi~iv~~a~k~g~~~~~Dpv~~Fv~~L~~~~PpA~~l~~itql 408 (442)
++++||+||++|+++++++.|++++++++||+++|+.|+++|..|+|+|.++.|||+|+||++||+++|||||++++||+
T Consensus 294 illvLGgnL~~g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL 373 (408)
T KOG2722|consen 294 ILLVLGGNLIQGLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQL 373 (408)
T ss_pred hhhhhccccccCchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987799999999999999999999999999
Q ss_pred cCch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013452 409 RGCG-REAAAVLFWVHIFAVFSMAGWIILYLNLMF 442 (442)
Q Consensus 409 ~~~~-~e~s~il~w~Y~~~~~~~t~~~~~~l~l~~ 442 (442)
+|.+ +|||+++||+|+++.+++|+|+++|+|+++
T Consensus 374 ~g~~e~Ecs~il~W~y~va~l~ltvw~~~f~~lv~ 408 (408)
T KOG2722|consen 374 NGVAERECSVILFWTYAVASLSLTVWSVFFLWLVV 408 (408)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhC
Confidence 9999 999999999999999999999999999974
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=1.3e-50 Score=415.71 Aligned_cols=378 Identities=30% Similarity=0.496 Sum_probs=286.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCChhhhhhhhhhhHhhhhhHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHH
Q 013452 27 AVLPIAKVFTICFLGFLMASKYVNILPASGRKLLNGLVFTLLLPCLIFSQLGQAITLQKMIEWWFIPINVVLGTISGSLI 106 (442)
Q Consensus 27 A~~pvlkVlli~~~G~~lA~~r~giL~~~~~k~lS~lv~~~FlP~LiFskla~~lt~~~l~~~w~ipv~~ll~~~ig~~l 106 (442)
++++++++++++++||+++ |+|+++++.+|.+|++++++++|||+|++++++.+.+++.++|++++++++.+++++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL 79 (385)
T ss_pred cHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCcceEEEEEeccCCCchHHHHHHHhhcCCCCCCCChhhHhhhhhHHHHHHHHHhhheeEEeeecccC
Q 013452 107 GLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVLIAALCRDPSNPFAEPETCSTQMTAYISFGQWVGAIILYTYVFHMLA 186 (442)
Q Consensus 107 g~l~~~~~~~P~~~r~~v~~a~~fgN~~sLPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~i~~~~~~~~~ws~g~~~l~ 186 (442)
++++.|++|.|+++|+.+..+|+|+|++++|+.+++++++ ++|++|++++.++++++.|++|+.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g-------------~~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 80 GFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFG-------------ERGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred HHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhc-------------chhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999964 389999999999999999999999888
Q ss_pred CCCCCCccccCCCCCccC-----CCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcCccccccccCCCCCCCCCC
Q 013452 187 PPPEGTFDIDEESLPIKN-----SSKDATPAPEQIPLLTEEAEPKDSNNPKRGKDATPATEQIPLLIEEAEPKDSKNPKR 261 (442)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (442)
..++++++.++++...++ +++++.+.+++.+....+..+.+ .+....++. ..++.+...+...+.+..+..+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 223 (385)
T PF03547_consen 147 SRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDED-GSPSSTPSQ--SSASAPSSVSTSPSPSNSTGAE 223 (385)
T ss_pred ccccccccccccccccccccccccCCccccCCcccccccccccccC-Ccccccccc--cccccchhhccCCcccccchhh
Confidence 654432221111100000 00000000000000000000000 000000000 0000000000000000011111
Q ss_pred chhHHHHHHHHHHhhhccccCchHHHHHHHHhhccchhhhhhhccCCCcchhHHHHHHHhccchhhHHHHhhccccCCCC
Q 013452 262 GKIAEVLIFIYEKLKLKQILQPPIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGP 341 (442)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~~~Pp~iaailg~iigliPpLk~lff~~~~pL~~l~ds~~~lG~a~VPl~llvLGa~La~gp 341 (442)
.+.++..+....+.-.+.++|||++|+++|++++++|++++++++ .+++++++++|++++|++++++|++|++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~ 298 (385)
T PF03547_consen 224 QKSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLALFVLGASLARGP 298 (385)
T ss_pred hhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 111111111111122688999999999999999999999999988 899999999999999999999999999987
Q ss_pred CCCCCCchhhHhHHHHHHHhhhhhHHHHHHHHhhcCCccCCChHHHHHHHhcccCchHHHHHHHHhhcCch-HHHHHHHH
Q 013452 342 GSAKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLF 420 (442)
Q Consensus 342 ~~~~~~~~~iv~i~~~RliilPiigi~iv~~a~k~g~~~~~Dpv~~Fv~~L~~~~PpA~~l~~itql~~~~-~e~s~il~ 420 (442)
+..+.+++.....++.||+++|++++++++++. - |+....+++++.++|||++..++|+.||.+ +++++.++
T Consensus 299 ~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~------l-~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~ 371 (385)
T PF03547_consen 299 RKSALGWKPSIIAVLVRLIILPLIGIGIVFLLG------L-DGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVF 371 (385)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHC------C-CHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHH
Confidence 777778888888899999999999999998654 2 666788999999999999999999999988 99999999
Q ss_pred HHHHHHHHHHHHHH
Q 013452 421 WVHIFAVFSMAGWI 434 (442)
Q Consensus 421 w~Y~~~~~~~t~~~ 434 (442)
|+|+++.+++|+|+
T Consensus 372 ~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 372 WSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHHHHHC
Confidence 99999999999995
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=99.96 E-value=2.7e-28 Score=244.67 Aligned_cols=308 Identities=23% Similarity=0.276 Sum_probs=256.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChhhhhhhhhhhHhhhhhHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHH
Q 013452 24 VKIAVLPIAKVFTICFLGFLMASKYVNILPASGRKLLNGLVFTLLLPCLIFSQLGQAITLQKMIEWWFIPINVVLGTISG 103 (442)
Q Consensus 24 i~~A~~pvlkVlli~~~G~~lA~~r~giL~~~~~k~lS~lv~~~FlP~LiFskla~~lt~~~l~~~w~ipv~~ll~~~ig 103 (442)
++..+.+++++++++++||+++ |.|+++++..|.+|++++++++|||+|++++++-..++ +++..+++..+.....+
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAF 78 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHH
Confidence 4567889999999999999999 99999999999999999999999999999999987666 88888888777778888
Q ss_pred HHHHHHHHHHhCCCCCCcceEEEEEeccCCCchHHHHHHHhhcCCCCCCCChhhHhhhhhHHHHHHHHHhhheeEEeeec
Q 013452 104 SLIGLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVLIAALCRDPSNPFAEPETCSTQMTAYISFGQWVGAIILYTYVFH 183 (442)
Q Consensus 104 ~~lg~l~~~~~~~P~~~r~~v~~a~~fgN~~sLPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~i~~~~~~~~~ws~g~~ 183 (442)
.+..++..|.+|.++++++.+..+++|+|++++++.+..++ || ++|++|.++|..+++++.|++|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~G------~~gl~~~~i~~~~~~~~~~~~g~~ 145 (311)
T COG0679 79 FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------FG------EKGLAYAVIFLIIGLFLMFTLGVI 145 (311)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------cC------cchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999998777666 67 899999999999999999999988
Q ss_pred ccCCCCCCCccccCCCCCccCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcCccccccccCCCCCCCCCCch
Q 013452 184 MLAPPPEGTFDIDEESLPIKNSSKDATPAPEQIPLLTEEAEPKDSNNPKRGKDATPATEQIPLLIEEAEPKDSKNPKRGK 263 (442)
Q Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (442)
.+.....+ + + ..
T Consensus 146 ~l~~~~~~------------------------~--------------------------------------~------~~ 157 (311)
T COG0679 146 LLARSGGG------------------------T--------------------------------------N------KS 157 (311)
T ss_pred HHHHhcCC------------------------c--------------------------------------h------hH
Confidence 77543110 0 0 00
Q ss_pred hHHHHHHHHHHhhhccccCchHHHHHHHHhhccchhhhhhhccCCCcchhHHHHHHHhccchhhHHHHhhccccCCCCCC
Q 013452 264 IAEVLIFIYEKLKLKQILQPPIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGS 343 (442)
Q Consensus 264 ~~~~~~~~~~~~~l~~~~~Pp~iaailg~iigliPpLk~lff~~~~pL~~l~ds~~~lG~a~VPl~llvLGa~La~gp~~ 343 (442)
.++.. .+-+.||+.+|.++|++..... +.- + .++.++++++|++++|++++++|+.|+. .+.
T Consensus 158 ~~~~~--------~~~~~nP~i~a~i~g~~~~~~~------i~l-P--~~~~~~~~~l~~a~~pl~li~lG~~L~~-~~~ 219 (311)
T COG0679 158 LLSVL--------KKLLTNPLIIALILGLLLNLLG------ISL-P--APLDTAVDLLASAASPLALIALGLSLAF-LKL 219 (311)
T ss_pred HHHHH--------HHHHhCcHHHHHHHHHHHHHcC------CCC-c--HHHHHHHHHHHHhhhhHHHHHHhhhcch-hhh
Confidence 11111 2567899999999999998765 111 1 2789999999999999999999999997 334
Q ss_pred CCCCchhhHhHHHHHHHhhhhhHHHHHHHHhhcCCccCCChHHHHHHHhcccCchHHHHHHHHhhcCch-HHHHHHHHHH
Q 013452 344 AKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWV 422 (442)
Q Consensus 344 ~~~~~~~iv~i~~~RliilPiigi~iv~~a~k~g~~~~~Dpv~~Fv~~L~~~~PpA~~l~~itql~~~~-~e~s~il~w~ 422 (442)
++...+.+......|+++.|++...+.+.. |+ ++...-++.++.++|+|.+-..+++-+|.+ +..++..+-|
T Consensus 220 ~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~---~l----~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~is 292 (311)
T COG0679 220 KGSKPPIILIALSLKLLLAPLVALLVAKLL---GL----SGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLS 292 (311)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHc---CC----ChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHH
Confidence 555567777777889999999999866532 32 444558999999999999999999999877 8888888889
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 013452 423 HIFAVFSMAGWIILYLNL 440 (442)
Q Consensus 423 Y~~~~~~~t~~~~~~l~l 440 (442)
-.++.+++|.|..+..+.
T Consensus 293 t~ls~~t~p~~~~~l~~~ 310 (311)
T COG0679 293 TLLSLLTLPLLILLLLRS 310 (311)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999888877653
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.95 E-value=4.8e-27 Score=236.35 Aligned_cols=315 Identities=19% Similarity=0.265 Sum_probs=245.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhccCCCChhhhhhhhhhhHhhhhhHHHHHhhhcccchhhhhhhhHHHHHHHHHHH
Q 013452 23 TVKIAVLPIAKVFTICFLGFLM-ASKYVNILPASGRKLLNGLVFTLLLPCLIFSQLGQAITLQKMIEWWFIPINVVLGTI 101 (442)
Q Consensus 23 li~~A~~pvlkVlli~~~G~~l-A~~r~giL~~~~~k~lS~lv~~~FlP~LiFskla~~lt~~~l~~~w~ipv~~ll~~~ 101 (442)
.+|..++.++.++++.++||++ . |.|+++++..|.+|++++++.+|||+|+++++.-..++....+...+.....+.
T Consensus 2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T TIGR00946 2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS 79 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999 8 999999999999999999999999999999985333234445455555556677
Q ss_pred HHHHHHHHHHH-HhCCCCCCcceEEEEEeccCCCchHHHHHHHhhcCCCCCCCChhhHhhhhhHHHHHHHHHhhheeEEe
Q 013452 102 SGSLIGLVIAY-IVRPPYPYFKFTIIHIGIGNIGNVPLVLIAALCRDPSNPFAEPETCSTQMTAYISFGQWVGAIILYTY 180 (442)
Q Consensus 102 ig~~lg~l~~~-~~~~P~~~r~~v~~a~~fgN~~sLPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~i~~~~~~~~~ws~ 180 (442)
..++++|++.| .+|.+++.++....+++++|++.+-+-+++++ || |+.. .+..|...+.....+..|++
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~-------~G--~~~~-~~~~~~~~~~~~~~~~~~~~ 149 (321)
T TIGR00946 80 GSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSL-------FG--EEGA-KILIAALFIDTGAVLMTIAL 149 (321)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHH-------hc--ccch-hhhHHHHHHHhccchhHHHH
Confidence 88899999998 88999999999999999999999999999999 55 1111 13677777777777788888
Q ss_pred eecccCCCCCCCccccCCCCCccCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcCccccccccCCCCCCCCC
Q 013452 181 VFHMLAPPPEGTFDIDEESLPIKNSSKDATPAPEQIPLLTEEAEPKDSNNPKRGKDATPATEQIPLLIEEAEPKDSKNPK 260 (442)
Q Consensus 181 g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (442)
|+........+ + ++ +
T Consensus 150 ~~~~~~~~~~~-----------------------~------------------------------------~~------~ 164 (321)
T TIGR00946 150 GLFLVSEDGAG-----------------------G------------------------------------EG------S 164 (321)
T ss_pred HHHHhcccccc-----------------------c------------------------------------cc------c
Confidence 86443211000 0 00 0
Q ss_pred CchhHHHHHHHHHHhhhccccCchHHHHHHHHhhccchhhhhhhccCCCcchhHHHHHHHhccchhhHHHHhhccccCCC
Q 013452 261 RGKIAEVLIFIYEKLKLKQILQPPIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDG 340 (442)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~~~Pp~iaailg~iigliPpLk~lff~~~~pL~~l~ds~~~lG~a~VPl~llvLGa~La~g 340 (442)
..+.++...... .+-+.||+.+|.++|+++...+. + -| .++.++++++|++++|+.++++|..+..
T Consensus 165 ~~~~~~~~~~~~----~~~~~nP~iia~i~Gl~~~~~~i-~-------lP-~~l~~~l~~lg~~~~plaLl~lG~~l~~- 230 (321)
T TIGR00946 165 GESTRLMLIFVW----KKLIKFPPLWAPLLSVILSLVGF-K-------MP-GLILKSISILSGATTPMALFSLGLALSP- 230 (321)
T ss_pred chhHHHHHHHHH----HHHHhCCChHHHHHHHHHHHHhh-c-------Cc-HHHHHHHHHHHHHHHHHHHHHHHHhhCh-
Confidence 001111121111 23457899999999999998752 1 11 5889999999999999999999999974
Q ss_pred CCCCCCCchhhHhHHHHHHHhhhhhHHHHHHHHhhcCCccCCChHHHHHHHhcccCchHHHHHHHHhhcCch-HHHHHHH
Q 013452 341 PGSAKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVL 419 (442)
Q Consensus 341 p~~~~~~~~~iv~i~~~RliilPiigi~iv~~a~k~g~~~~~Dpv~~Fv~~L~~~~PpA~~l~~itql~~~~-~e~s~il 419 (442)
+..+.++|.+...++.|+++.|++...+... .+. |+..+-+++++.++|+|.+-..+++-||.+ ++.+...
T Consensus 231 -~~~~~~~~~~~~~~~~klil~P~i~~~~~~~------~~l-~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v 302 (321)
T TIGR00946 231 -RKIKLGVRDAILALIVRFLVQPAVMAGISKL------IGL-RGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAV 302 (321)
T ss_pred -hhhccChHHHHHHHHHHHHHHHHHHHHHHHH------hCC-ChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHH
Confidence 2223456888888999999999999766553 234 788899999999999999999999999977 9999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013452 420 FWVHIFAVFSMAGWIIL 436 (442)
Q Consensus 420 ~w~Y~~~~~~~t~~~~~ 436 (442)
+++..++.+++|+|+.+
T Consensus 303 ~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 303 TLSTVLSLISLPLFIIL 319 (321)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999875
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.93 E-value=3e-24 Score=215.58 Aligned_cols=305 Identities=15% Similarity=0.164 Sum_probs=229.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhhhhhhhhhhHhhhhhHHHHHhhhcccchhhhhhhhHHHHHHHHHHHH
Q 013452 23 TVKIAVLPIAKVFTICFLGFLMASKYVNILPASGRKLLNGLVFTLLLPCLIFSQLGQAITLQKMIEWWFIPINVVLGTIS 102 (442)
Q Consensus 23 li~~A~~pvlkVlli~~~G~~lA~~r~giL~~~~~k~lS~lv~~~FlP~LiFskla~~lt~~~l~~~w~ipv~~ll~~~i 102 (442)
.|+.+ ++-+++++++||++. |+|+++++..|.+|++++++.+||++|+++.+. +.++..+-|.+.+..++.+..
T Consensus 4 ~~~~~---ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~ 77 (314)
T PRK09903 4 FFIGD---LLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVG 77 (314)
T ss_pred HHHHH---HHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHH
Confidence 44444 455668889999999 999999999999999999999999999999864 666665345566777788888
Q ss_pred HHHHHHHHHH-HhCCCCCCcceEEEEEeccCCCchHHHHHHHhhcCCCCCCCChhhHhhhhhHHHHHHHHHhhheeEEee
Q 013452 103 GSLIGLVIAY-IVRPPYPYFKFTIIHIGIGNIGNVPLVLIAALCRDPSNPFAEPETCSTQMTAYISFGQWVGAIILYTYV 181 (442)
Q Consensus 103 g~~lg~l~~~-~~~~P~~~r~~v~~a~~fgN~~sLPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~i~~~~~~~~~ws~g 181 (442)
.++++|++.+ ..|-+++.++....+++++|++.+-+-+++++ || |+.. -|+.|..++. +.+++.|++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G--~~~~-~~~~~a~~~~-~~~~~~~~~g 146 (314)
T PRK09903 78 CFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YG--DSVS-TGLVVAIISI-IVNAITIPIG 146 (314)
T ss_pred HHHHHHHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cC--chhh-hhhHHHHHHH-HHHHHHHHHH
Confidence 8888888875 66777777777788889999999999999998 55 2211 1555555544 5688889888
Q ss_pred ecccCCCCCCCccccCCCCCccCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcCccccccccCCCCCCCCCC
Q 013452 182 FHMLAPPPEGTFDIDEESLPIKNSSKDATPAPEQIPLLTEEAEPKDSNNPKRGKDATPATEQIPLLIEEAEPKDSKNPKR 261 (442)
Q Consensus 182 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (442)
...+...+.+ + ++ +
T Consensus 147 ~~~~~~~~~~---------------------~--------------------------------------~~------~- 160 (314)
T PRK09903 147 LYLLNPSSGA---------------------D--------------------------------------GK------K- 160 (314)
T ss_pred HHHHcccccc---------------------c--------------------------------------cc------c-
Confidence 6665432100 0 00 0
Q ss_pred chhHHHHHHHHHHhhhccccCchHHHHHHHHhhccchhhhhhhccCCCcchhHHHHHHHhccchhhHHHHhhccccCCCC
Q 013452 262 GKIAEVLIFIYEKLKLKQILQPPIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGP 341 (442)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~~~Pp~iaailg~iigliPpLk~lff~~~~pL~~l~ds~~~lG~a~VPl~llvLGa~La~gp 341 (442)
+..++.++ +-+.||+.+|.++|+++.+. +-.-| .++.++++++|++++|+.++.+|+.|++..
T Consensus 161 ~~~~~~l~--------~~~~nP~iia~~~gl~~~l~--------~i~lP-~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~ 223 (314)
T PRK09903 161 NSNLSALI--------SAAKEPVVWAPVLATILVLV--------GVKIP-AAWDPTFNLIAKANSGVAVFAAGLTLAAHK 223 (314)
T ss_pred chHHHHHH--------HHHhchHHHHHHHHHHHHHc--------CCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 00012221 33678999999999997653 11111 589999999999999999999999999742
Q ss_pred CCCCCCchhhHhHHHHHHHhhhhhHHHHHHHHhhcCCccCCChHHHHHHHhcccCchHHHHHHHHhhcCch-HHHHHHHH
Q 013452 342 GSAKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLF 420 (442)
Q Consensus 342 ~~~~~~~~~iv~i~~~RliilPiigi~iv~~a~k~g~~~~~Dpv~~Fv~~L~~~~PpA~~l~~itql~~~~-~e~s~il~ 420 (442)
. +.. +......+.|+++.|++...+... .| - |+...=+++++.++|+|.+-..+++-||.+ +..++..+
T Consensus 224 ~--~~~-~~~~~~~~~Kli~~P~i~~~~~~~---~~---l-~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~ 293 (314)
T PRK09903 224 F--EFS-AEIAYNTFLKLILMPLALLLVGMA---CH---L-NSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLA 293 (314)
T ss_pred c--ccc-HHHHHHHHHHHHHHHHHHHHHHHH---cC---C-CcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHH
Confidence 2 122 345566788999999988655543 23 3 666777999999999999999999999877 88888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013452 421 WVHIFAVFSMAGWIILY 437 (442)
Q Consensus 421 w~Y~~~~~~~t~~~~~~ 437 (442)
.+..++.+++|+|+.++
T Consensus 294 ~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 294 VSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999863
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=97.21 E-value=0.0014 Score=65.43 Aligned_cols=110 Identities=11% Similarity=0.056 Sum_probs=88.0
Q ss_pred cchhhHHHHhhccccCCC-CCCCCCCchhhHhHHHHHHHhhhhhHHHHHHHHhhcCCccCCChHHHHHHHhcccCchHHH
Q 013452 323 EAMIPCILLALGGNLVDG-PGSAKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVL 401 (442)
Q Consensus 323 ~a~VPl~llvLGa~La~g-p~~~~~~~~~iv~i~~~RliilPiigi~iv~~a~k~g~~~~~Dpv~~Fv~~L~~~~PpA~~ 401 (442)
-..+...++.+|.++... .+.....+|.+...++.|++++|+++..+.+.. + .||.+...+++..++|+|.+
T Consensus 11 ~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~------~-l~~~~~~glvL~~~~P~~~~ 83 (286)
T TIGR00841 11 LILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVF------K-LPPELAVGVLIVGCCPGGTA 83 (286)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHh------C-CCHHHHHHHHheeeCCCchH
Confidence 334778899999999852 111112356777888899999999998776532 2 38999999999999999999
Q ss_pred HHHHHhhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013452 402 SGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILYLN 439 (442)
Q Consensus 402 l~~itql~~~~-~e~s~il~w~Y~~~~~~~t~~~~~~l~ 439 (442)
-..+|+.+|.. +..++....+-+++++++|+|+.++..
T Consensus 84 s~v~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~ 122 (286)
T TIGR00841 84 SNVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAK 122 (286)
T ss_pred HHHHHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999766 777777779999999999999988865
No 7
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=94.57 E-value=0.58 Score=46.64 Aligned_cols=133 Identities=14% Similarity=0.178 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCChhhhhh---hhhhhHhhhhhHHHHHhhhcccchhhh-hhhhHHHHHHHHHHH
Q 013452 26 IAVLPIAKVFTICFLGFLMASKYVNILPASGRKL---LNGLVFTLLLPCLIFSQLGQAITLQKM-IEWWFIPINVVLGTI 101 (442)
Q Consensus 26 ~A~~pvlkVlli~~~G~~lA~~r~giL~~~~~k~---lS~lv~~~FlP~LiFskla~~lt~~~l-~~~w~ipv~~ll~~~ 101 (442)
.+.+ ..-+++-...|..+.. .- ++.+|. ++.+... ++=++++.-++.+. +++ .+.|.+-+-.++...
T Consensus 136 i~~~-~~~v~vPl~lG~~~r~--~~---p~~~~~~~~~~~~s~~-~l~liv~~~~~~~~--~~i~~~~~~~~~~~~ll~~ 206 (286)
T TIGR00841 136 IGLS-LVAVLIPVSIGMLVKH--KL---PQIAKIILKVGLISVF-LLSVIIAVVGGINV--ENLATIGPLLLLVGILLPL 206 (286)
T ss_pred HHHH-HHHHHHHHHHHHHHHH--Hh---HHHHHHHHhCchHHHH-HHHHHHHHHHHhhH--HHHHHhhHHHHHHHHHHHH
Confidence 3455 7888999999998883 21 222222 3333222 11133344443332 222 223444455777899
Q ss_pred HHHHHHHHHHHHhCCCCCCcceEEEEEeccCCCchHHHHHHHhhcCCCCCCCChhhHhhhhhHHHHHHHHHhhhee
Q 013452 102 SGSLIGLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVLIAALCRDPSNPFAEPETCSTQMTAYISFGQWVGAIIL 177 (442)
Q Consensus 102 ig~~lg~l~~~~~~~P~~~r~~v~~a~~fgN~~sLPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~i~~~~~~~~~ 177 (442)
+|+.+||++.|.+|.+++.+.-+.-.++..|++ +-+++..+. |+ ++...-...|...+...+.++.
T Consensus 207 ~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~-------f~--~~~a~~~~~~~v~~~~~~~~~a 272 (286)
T TIGR00841 207 AGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS-------FS--PEVAVPSAIFPLIYALFQLAFA 272 (286)
T ss_pred HHHHHHHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh-------cC--hHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888888889999988 555444433 43 2233334456665555555544
No 8
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=94.46 E-value=0.16 Score=51.23 Aligned_cols=109 Identities=17% Similarity=0.093 Sum_probs=84.2
Q ss_pred cchhhHHHHhhccccCCCC-CCCCCCchhhHhHHHHHHHhhhhhHHHHHHHHhhcCCccCCChHHHHHHHhcccCchHHH
Q 013452 323 EAMIPCILLALGGNLVDGP-GSAKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVL 401 (442)
Q Consensus 323 ~a~VPl~llvLGa~La~gp-~~~~~~~~~iv~i~~~RliilPiigi~iv~~a~k~g~~~~~Dpv~~Fv~~L~~~~PpA~~ 401 (442)
..++-++++..|.+|.+.. +..-.+||..+..++.-++++|++++++.+... - ||-+.-=+++..|.|..++
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~------l-~~~l~~Gl~ll~~~Pggv~ 113 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP------L-PPELAVGLLLLGCCPGGVA 113 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC------C-CHHHHHhHHheeeCCCchh
Confidence 4566778889999998621 122236899999999999999999999888543 4 8888888999999999999
Q ss_pred HHHHHhhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013452 402 SGAVSSLRG-CGREAAAVLFWVHIFAVFSMAGWIILYL 438 (442)
Q Consensus 402 l~~itql~~-~~~e~s~il~w~Y~~~~~~~t~~~~~~l 438 (442)
...+|.+.+ +---+-..-.-+-+++++..|+++.+|+
T Consensus 114 S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~ 151 (319)
T COG0385 114 SNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLA 151 (319)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999985 3333333334578889999999988876
No 9
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=93.13 E-value=0.4 Score=44.53 Aligned_cols=108 Identities=16% Similarity=0.225 Sum_probs=73.5
Q ss_pred hhhHHHHhhccccCCCCCCCC--CCchhhHhHHHHHHHhhhhhHHHHHHHHhhcCCccCCChHHHHHHHhcccCchHHHH
Q 013452 325 MIPCILLALGGNLVDGPGSAK--LGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLS 402 (442)
Q Consensus 325 ~VPl~llvLGa~La~gp~~~~--~~~~~iv~i~~~RliilPiigi~iv~~a~k~g~~~~~Dpv~~Fv~~L~~~~PpA~~l 402 (442)
.+-+.++.+|.++... +-.+ -..|.++...+..++++|+++.++.+.. .+ +||-+..-+++..+.|.+...
T Consensus 3 ~l~~~mf~~gl~~~~~-~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~-----~~-~~~~~~~Gl~l~~~~P~~~~s 75 (187)
T PF01758_consen 3 LLFLMMFSMGLSLTFE-DLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLL-----LP-LSPALALGLLLVAACPGGPAS 75 (187)
T ss_dssp HHHHHHHHHHHC--GG-GGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HH-----TT---HHHHHHHHHHHHS-B-THH
T ss_pred hhhHHHHHhhhcccHH-HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-----hc-CCHHHHHHHHHHhcCCcHHHH
Confidence 3456677777777631 1111 1357777788999999999999888433 22 488999999999999999999
Q ss_pred HHHHhhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013452 403 GAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILYLN 439 (442)
Q Consensus 403 ~~itql~~~~-~e~s~il~w~Y~~~~~~~t~~~~~~l~ 439 (442)
-.+|.+.+-. .-..+.-..+-.++++.+|+|..++..
T Consensus 76 ~~~t~l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~ 113 (187)
T PF01758_consen 76 NVFTYLAGGDVALSVSLTLISTLLAPFLMPLLLYLLSG 113 (187)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhCCCcccccceeeHHHHHHHHHHHHHHHHHhc
Confidence 9999888755 444444447889999999999887753
No 10
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=89.78 E-value=3.2 Score=42.30 Aligned_cols=138 Identities=13% Similarity=0.043 Sum_probs=90.2
Q ss_pred HHHHHHHHhhccchhhhhhhccCCCcchhHHHHHHHhccchhh------HHHHhhccccCCC-CCCCCCCchhhHhHHHH
Q 013452 285 IIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIP------CILLALGGNLVDG-PGSAKLGFRTTAAIIFG 357 (442)
Q Consensus 285 ~iaailg~iigliPpLk~lff~~~~pL~~l~ds~~~lG~a~VP------l~llvLGa~La~g-p~~~~~~~~~iv~i~~~ 357 (442)
.+++++|+++|..-|-. ..++.. . .+.+...| .+++.+|.++... .+..--.+|.+....+.
T Consensus 13 ~~~~i~~~~~g~~~P~~---------~~~~~~-~-~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~ 81 (328)
T TIGR00832 13 FLAIAAGVGLGVLFPSV---------FQALAA-L-EVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFI 81 (328)
T ss_pred HHHHHHHHHHHHhcccc---------HHHHHH-H-HhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHH
Confidence 56677788888854321 111111 0 11233444 3666777887631 11111246888899999
Q ss_pred HHHhhhhhHHHHHHHHhhcCCccCCChHHHHHHHhcccCchHHHHHHHHhhcCch-HHHHHHHHHHHHHHHHHHHHHHHH
Q 013452 358 RLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIIL 436 (442)
Q Consensus 358 RliilPiigi~iv~~a~k~g~~~~~Dpv~~Fv~~L~~~~PpA~~l~~itql~~~~-~e~s~il~w~Y~~~~~~~t~~~~~ 436 (442)
-++++|+++.++.+.. .+ ++|-+..=+++..|.|.+.....+|.+.+-. ....+.--.+-.++++.+|.++.+
T Consensus 82 qfvi~Plla~~l~~l~-----~~-~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~l 155 (328)
T TIGR00832 82 NWIIGPFLMFLLAWLF-----LR-DLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWL 155 (328)
T ss_pred HHHHHHHHHHHHHHHH-----cC-CCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887643 12 3777999999999999999888889888644 332222246777788888888776
Q ss_pred HHh
Q 013452 437 YLN 439 (442)
Q Consensus 437 ~l~ 439 (442)
|..
T Consensus 156 l~~ 158 (328)
T TIGR00832 156 LLG 158 (328)
T ss_pred HHh
Confidence 653
No 11
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=88.45 E-value=2.8 Score=42.41 Aligned_cols=140 Identities=20% Similarity=0.204 Sum_probs=93.8
Q ss_pred HHHHHHHHhhccchhhhhhhccCCCcchhHHHHHHHhccchhhHHHHhhccccCCCC-CCCCCCchhhHhHHHHHHHhhh
Q 013452 285 IIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGP-GSAKLGFRTTAAIIFGRLVLVP 363 (442)
Q Consensus 285 ~iaailg~iigliPpLk~lff~~~~pL~~l~ds~~~lG~a~VPl~llvLGa~La~gp-~~~~~~~~~iv~i~~~RliilP 363 (442)
.++.++++.+|..=|-... ..++++. ++.....|.++.++-|.+|.+.. +..-..||....+...=+++.|
T Consensus 4 l~~l~~ai~la~~~P~~g~---~~~~~~~-----~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 4 LLGLLLAILLAYLFPAPGA---AGGVIKP-----EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred HHHHHHHHHHHHHcCcccc---cCCccch-----hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 5666677777655433211 1122211 23334448899999999997521 1222358999999999999999
Q ss_pred hhHHHHHHHHhhcCCccCCChHHHHHHHhcccCchHHHHH-HHHhhcCchHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 013452 364 PAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSG-AVSSLRGCGREAAAVLF--WVHIFAVFSMAGWIILYL 438 (442)
Q Consensus 364 iigi~iv~~a~k~g~~~~~Dpv~~Fv~~L~~~~PpA~~l~-~itql~~~~~e~s~il~--w~Y~~~~~~~t~~~~~~l 438 (442)
+++.++...... + .|+-+..=+++..|+|+.++.. .+|+..|-. +..+++. -+-.+.++..|+|+.+++
T Consensus 76 ll~~~~~~l~~~--~---~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN-~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 76 LLGFGLSRLFPA--F---LPPELALGLLILACLPTTVSSSVVLTRLAGGN-VALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHHHHHHhhc--c---CCHHHHHHHHHHhhCCchhhHHHHHHHHcCCC-HHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 999988876542 3 2666999999999999998774 577776422 2222222 577889999999998887
No 12
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=80.74 E-value=3.5 Score=41.95 Aligned_cols=109 Identities=11% Similarity=0.024 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhhcc-----CCCChhhhhhhhhhhHhhhhhHHHHHhhhccc--chhhhhhhhHHHHHHHHHHHHHH
Q 013452 32 AKVFTICFLGFLMASKYV-----NILPASGRKLLNGLVFTLLLPCLIFSQLGQAI--TLQKMIEWWFIPINVVLGTISGS 104 (442)
Q Consensus 32 lkVlli~~~G~~lA~~r~-----giL~~~~~k~lS~lv~~~FlP~LiFskla~~l--t~~~l~~~w~ipv~~ll~~~ig~ 104 (442)
.-+++-...|..+.+... +...++.++.++.+.. +++=..++...+.+- -.++..+.+.+-+-.++++.+++
T Consensus 182 ~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~ 260 (328)
T TIGR00832 182 IYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL-IALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMF 260 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 345666778877763211 1111233334554433 233334444444432 11222233344445678899999
Q ss_pred HHHHHHHHHhCCCCCCcceEEEEEeccCCCchHHHHHHHh
Q 013452 105 LIGLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVLIAAL 144 (442)
Q Consensus 105 ~lg~l~~~~~~~P~~~r~~v~~a~~fgN~~sLPl~li~sl 144 (442)
.+|+++.|.+|.+++.|.-+..+++-.|. ++++.-+.
T Consensus 261 ~lg~~~~r~~~l~~~~~~a~~~e~g~qN~---~lai~lA~ 297 (328)
T TIGR00832 261 FLTFALAKKLGLPYSITAPAAFTGASNNF---ELAIAVAI 297 (328)
T ss_pred HHHHHHHHHhCcChhhhhhheehhhhhhH---HHHHHHHH
Confidence 99999999999999999999999988875 34444444
No 13
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=77.65 E-value=9.6 Score=38.67 Aligned_cols=44 Identities=25% Similarity=0.270 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceEEEEEeccCCC
Q 013452 91 FIPINVVLGTISGSLIGLVIAYIVRPPYPYFKFTIIHIGIGNIG 134 (442)
Q Consensus 91 ~ipv~~ll~~~ig~~lg~l~~~~~~~P~~~r~~v~~a~~fgN~~ 134 (442)
.+-+..+++..+|+..||...|.++.+++.|.-+..|++-.|.+
T Consensus 224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~ 267 (319)
T COG0385 224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLG 267 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHH
Confidence 56777888899999999999999999999999999999999985
No 14
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=71.36 E-value=10 Score=39.41 Aligned_cols=85 Identities=16% Similarity=0.254 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhhccCCCChhhhhhhhhhhHhhhhhHHHHHhhhcccchhhhhhhhH----HHHHHHHHHHHHHHHHHH
Q 013452 34 VFTICFLGFLMASKYVNILPASGRKLLNGLVFTLLLPCLIFSQLGQAITLQKMIEWWF----IPINVVLGTISGSLIGLV 109 (442)
Q Consensus 34 Vlli~~~G~~lA~~r~giL~~~~~k~lS~lv~~~FlP~LiFskla~~lt~~~l~~~w~----ipv~~ll~~~ig~~lg~l 109 (442)
++++...|.+++ ..|++|.+....+.+.+.+.++|.-++==+ -+.+.+++.+... ..+...+.+++|..+++.
T Consensus 28 ~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlL-l~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~~ 104 (378)
T PF05684_consen 28 AVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLL-LSADLRRILRLGGRLLLAFLIGAVGTVIGAVVAFL 104 (378)
T ss_pred HHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHH-HHccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888999 799997677777888888888888776555 4456666655553 333344456666666666
Q ss_pred HHHHhCCCCCCc
Q 013452 110 IAYIVRPPYPYF 121 (442)
Q Consensus 110 ~~~~~~~P~~~r 121 (442)
+.+..--|+.|+
T Consensus 105 l~~~~l~~~~wk 116 (378)
T PF05684_consen 105 LFGGFLGPEGWK 116 (378)
T ss_pred HHhhcccchHHH
Confidence 655443344444
No 15
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=54.71 E-value=58 Score=33.04 Aligned_cols=103 Identities=22% Similarity=0.215 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChhhhhhhhhhhHhhhhhHHHHHhhhcccchhhhhhhhH-HHHHHHHHHHHHHHHHH
Q 013452 30 PIAKVFTICFLGFLMASKYVNILPASGRKLLNGLVFTLLLPCLIFSQLGQAITLQKMIEWWF-IPINVVLGTISGSLIGL 108 (442)
Q Consensus 30 pvlkVlli~~~G~~lA~~r~giL~~~~~k~lS~lv~~~FlP~LiFskla~~lt~~~l~~~w~-ipv~~ll~~~ig~~lg~ 108 (442)
+.+..++-+.+|.++. | ++++.++.+++=+- +..|-.. --+|.+++++++.+.++ ..+..++...+...+++
T Consensus 165 ~lv~lilpILiGmilG----N-ld~~~~~~l~~Gi~-f~I~f~~-f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~ 237 (312)
T PRK12460 165 ALVAALLPLVLGMILG----N-LDPDMRKFLTKGGP-LLIPFFA-FALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNI 237 (312)
T ss_pred HHHHHHHHHHHHHHHh----c-cchhhHHHHhccce-EeHHHHH-HHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 4466888899999988 4 67666766665432 2333333 45899999999999864 44445556777888888
Q ss_pred HHHHHhCCCCCCcceEEEEEeccCCCchHHHHH
Q 013452 109 VIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVLI 141 (442)
Q Consensus 109 l~~~~~~~P~~~r~~v~~a~~fgN~~sLPl~li 141 (442)
++.|++|.+++. .+..+...||.--=|-++.
T Consensus 238 ~i~rllg~~~~~--g~li~stAGnAIcgpAAVa 268 (312)
T PRK12460 238 FADRLVGGTGIA--GAAASSTAGNAVATPLAIA 268 (312)
T ss_pred HHHHHhCCChhH--HHHHHHHhhHHHHHHHHHH
Confidence 889999887554 2223333677655554443
No 16
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=42.66 E-value=2.9e+02 Score=29.19 Aligned_cols=137 Identities=20% Similarity=0.358 Sum_probs=89.3
Q ss_pred HHHHHHHHH------HHHHHHHHHHHhhccCCCChhhhhhhhhhh-----HhhhhhHHHHHhhh---cccchhhhhhhhH
Q 013452 26 IAVLPIAKV------FTICFLGFLMASKYVNILPASGRKLLNGLV-----FTLLLPCLIFSQLG---QAITLQKMIEWWF 91 (442)
Q Consensus 26 ~A~~pvlkV------lli~~~G~~lA~~r~giL~~~~~k~lS~lv-----~~~FlP~LiFskla---~~lt~~~l~~~w~ 91 (442)
+.=-|++|= +++.....++. +.|+++++..+.+.+.. .++|.-||+-.++= +.+=.+...++
T Consensus 48 G~riPi~k~yiGGg~il~~f~ps~Lv--~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~-- 123 (414)
T PF03390_consen 48 GDRIPILKDYIGGGAILCIFVPSALV--YFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARF-- 123 (414)
T ss_pred HhhChhhhccCChHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHH--
Confidence 334577774 67777777888 89999999999998876 56788888877652 22233344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCC--CcceEEEEEeccC-CCchHHHHHHHhhcCCCCCCCChhhHhhhhhHHHHH
Q 013452 92 IPINVVLGTISGSLIGLVIAYIVRPPYP--YFKFTIIHIGIGN-IGNVPLVLIAALCRDPSNPFAEPETCSTQMTAYISF 168 (442)
Q Consensus 92 ipv~~ll~~~ig~~lg~l~~~~~~~P~~--~r~~v~~a~~fgN-~~sLPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~i 168 (442)
+|. .+...+.+.++|-++..++....+ ..+.+++.-+=|| -|-+|++.+.+=.-. .|.++-.++.+..+.+
T Consensus 124 ~p~-il~g~~~a~~~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g-----~~~~~~~s~~ipa~~l 197 (414)
T PF03390_consen 124 IPP-ILGGVIGAFLLGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALG-----QDAEEYFSQLIPALTL 197 (414)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHHHhC-----CCHHHHHHHHHHHHHH
Confidence 555 555666666777777777665432 3344555444444 799999998765321 2567777777777665
Q ss_pred HHHH
Q 013452 169 GQWV 172 (442)
Q Consensus 169 ~~~~ 172 (442)
.-.+
T Consensus 198 gNi~ 201 (414)
T PF03390_consen 198 GNIF 201 (414)
T ss_pred HHHH
Confidence 4443
No 17
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=42.26 E-value=1.1e+02 Score=30.97 Aligned_cols=105 Identities=16% Similarity=0.104 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCChhhh--hhhhhhhHhhhhhHHHHHhhhcccchh---hh--hhhhHHHHHHHHHHH
Q 013452 29 LPIAKVFTICFLGFLMASKYVNILPASGR--KLLNGLVFTLLLPCLIFSQLGQAITLQ---KM--IEWWFIPINVVLGTI 101 (442)
Q Consensus 29 ~pvlkVlli~~~G~~lA~~r~giL~~~~~--k~lS~lv~~~FlP~LiFskla~~lt~~---~l--~~~w~ipv~~ll~~~ 101 (442)
+=++++++-..+|-.+.. . +.+... |..-+..=...+-.++++...++...+ +. .++..+-...+....
T Consensus 162 ~L~~~vllP~~~Gq~~r~--~--~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (313)
T PF13593_consen 162 KLVLTVLLPLVLGQLLRR--W--VPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLL 237 (313)
T ss_pred HHHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHH
Confidence 445677888888887762 1 222221 122222234444556666666553211 22 333344444556677
Q ss_pred HHHHHHHHHHHHhCCCCCCcceEEEEEeccCCCchHHHH
Q 013452 102 SGSLIGLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVL 140 (442)
Q Consensus 102 ig~~lg~l~~~~~~~P~~~r~~v~~a~~fgN~~sLPl~l 140 (442)
+...++|...|.++.+++.|--++.|++- .|+|+++
T Consensus 238 ~~l~~~~~~~r~~~~~~~d~iA~~F~gs~---Ksl~~gv 273 (313)
T PF13593_consen 238 VVLVLGWLAARLLGFSRPDRIAVLFCGSQ---KSLALGV 273 (313)
T ss_pred HHHHHHHHHHhhcCCChhhEEEEEEEcCc---CcchhHH
Confidence 88899999999999999888777776663 3444444
No 18
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=39.05 E-value=76 Score=33.06 Aligned_cols=104 Identities=14% Similarity=0.215 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCCh-hhhhhhhhhhHhhhhhHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 013452 32 AKVFTICFLGFLMASKYVNILPA-SGRKLLNGLVFTLLLPCLIFSQLGQAITLQKMIEWWFIPINVVLGTISGSLIGLVI 110 (442)
Q Consensus 32 lkVlli~~~G~~lA~~r~giL~~-~~~k~lS~lv~~~FlP~LiFskla~~lt~~~l~~~w~ipv~~ll~~~ig~~lg~l~ 110 (442)
.-+++++.+|...+ ....... .....++....++| |.-+|..-+++++.+-..+.+..++...+-.++=+++
T Consensus 241 ~~il~~tt~~l~~~--~~~~~~~l~g~~~lg~~lly~f-----fa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~~ 313 (378)
T PF05684_consen 241 WLILTVTTLGLATS--FPPFRKLLRGASELGTFLLYLF-----FAVIGASADISELLDAPSLFLFGFIILAIHLLLMLIL 313 (378)
T ss_pred HHHHHHHHHHHHHh--ccchhhcCCchHHHHHHHHHHH-----HHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777787776 3333333 56667777777665 7888999999999995556666666677777888889
Q ss_pred HHHhCCCCCCcceEEEEEeccCCCchHHHHHHHhhc
Q 013452 111 AYIVRPPYPYFKFTIIHIGIGNIGNVPLVLIAALCR 146 (442)
Q Consensus 111 ~~~~~~P~~~r~~v~~a~~fgN~~sLPl~li~sl~~ 146 (442)
.|++|.| ...+.-++=.|+|.-+.+-..|-++
T Consensus 314 ~kl~k~~----l~~~~vAS~AnIGGpaTA~a~A~a~ 345 (378)
T PF05684_consen 314 GKLFKID----LFELLVASNANIGGPATAPAVAAAK 345 (378)
T ss_pred HHHHCCC----HHHHHHHhhcccCCcchHHHHHHhc
Confidence 9999998 4444445666777777665555544
No 19
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=38.56 E-value=1.4e+02 Score=30.71 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhhccCCCChhhhhhhh---hhhHhhhhhHHHHHhhh-cccchhhhhhhhHHHHH-HHHHHHHHH-HHH
Q 013452 34 VFTICFLGFLMASKYVNILPASGRKLLN---GLVFTLLLPCLIFSQLG-QAITLQKMIEWWFIPIN-VVLGTISGS-LIG 107 (442)
Q Consensus 34 Vlli~~~G~~lA~~r~giL~~~~~k~lS---~lv~~~FlP~LiFskla-~~lt~~~l~~~w~ipv~-~ll~~~ig~-~lg 107 (442)
-..+...|+++. ..|+++++.....+ |.+...+++.+++. ++ ...+++++.+.--.|.. .++...+|. +.+
T Consensus 207 ~v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~g-iGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s 283 (347)
T TIGR00783 207 YAFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVG-VGVSYIDLDDLVAALSWQFVVICLSVVVAMILGG 283 (347)
T ss_pred HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cccccCCHHHHHHHhchhHhhhHHHHHHHHHHHH
Confidence 345566788887 89999998766544 45555677776652 23 45788888886412221 223344444 445
Q ss_pred HHHHHHhCCC
Q 013452 108 LVIAYIVRPP 117 (442)
Q Consensus 108 ~l~~~~~~~P 117 (442)
+++.|+++.=
T Consensus 284 ~lvGKllG~Y 293 (347)
T TIGR00783 284 AFLGKLMGMY 293 (347)
T ss_pred HHHHHHhCCC
Confidence 6888988874
No 20
>PRK11677 hypothetical protein; Provisional
Probab=35.82 E-value=41 Score=29.86 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC
Q 013452 96 VVLGTISGSLIGLVIAYIVRPP 117 (442)
Q Consensus 96 ~ll~~~ig~~lg~l~~~~~~~P 117 (442)
+++.+++|+++|+++.|++..-
T Consensus 6 a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHhhccch
Confidence 3488999999999999976543
No 21
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=31.44 E-value=1.5e+02 Score=30.07 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=45.4
Q ss_pred HHHHHhhhcccchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceEEEEEeccCCCchHHHHHHHhhcCCC
Q 013452 71 CLIFSQLGQAITLQKMIEWW-FIPINVVLGTISGSLIGLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVLIAALCRDPS 149 (442)
Q Consensus 71 ~LiFskla~~lt~~~l~~~w-~ipv~~ll~~~ig~~lg~l~~~~~~~P~~~r~~v~~a~~fgN~~sLPl~li~sl~~~~~ 149 (442)
++.+--.+.+++.++....- =.-+-.+.=+++|.++|+++.|++...--..+++. |==|++++.+++.+++
T Consensus 52 g~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~--------GlS~LAiiaa~~~~Ng 123 (314)
T PF03812_consen 52 GVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFL--------GLSALAIIAAMTNSNG 123 (314)
T ss_pred HHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCcccccccccc--------chHHHHHHHHHhcCCH
Confidence 55556679999988765432 11111234489999999999999987622112122 2347888888877663
No 22
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=29.91 E-value=1.8e+02 Score=29.62 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCChhhhhhhhhhhHhhhhhHHHHHhhhcccchhhhhhhhHH-HHHHHHHHHHHHHH
Q 013452 28 VLPIAKVFTICFLGFLMASKYVNILPASGRKLLNGLVFTLLLPCLIFSQLGQAITLQKMIEWWFI-PINVVLGTISGSLI 106 (442)
Q Consensus 28 ~~pvlkVlli~~~G~~lA~~r~giL~~~~~k~lS~lv~~~FlP~LiFskla~~lt~~~l~~~w~i-pv~~ll~~~ig~~l 106 (442)
.++.+.+++-..+|.++. =+|+|.||-+++-. .+..|-+-| .++..++++++.+=+.- -+-.++.+.+....
T Consensus 168 ~~~lv~~llP~iiG~iLG-----NLD~~~r~fl~~~~-~~lIPF~~f-~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 168 WMSLVAALLPIIIGMILG-----NLDPDFRKFLAPGV-PILIPFFGF-ALGAGINLSNIIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCCHHHHHHHhcCC-Ceeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 678888999999999886 58999999998864 566787776 48999999999886632 22234444555555
Q ss_pred HHHHHHHh-CCCCCCcceEEEEEeccCCCchHHHHHHHh
Q 013452 107 GLVIAYIV-RPPYPYFKFTIIHIGIGNIGNVPLVLIAAL 144 (442)
Q Consensus 107 g~l~~~~~-~~P~~~r~~v~~a~~fgN~~sLPl~li~sl 144 (442)
.++.-|.. |=+ =..+.-..+..||.-.-|-++-++-
T Consensus 241 ~~~~dr~i~~~~--g~aG~A~sstAGnavatPaaiA~~d 277 (314)
T PF03812_consen 241 LYLADRLILKGN--GVAGAAISSTAGNAVATPAAIAAAD 277 (314)
T ss_pred HHHHHHHHcCCC--CceeehHHhhhhhhhhhhHHHHHhC
Confidence 56666653 322 1223444567899999998776554
No 23
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.12 E-value=54 Score=28.69 Aligned_cols=22 Identities=23% Similarity=0.605 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC
Q 013452 96 VVLGTISGSLIGLVIAYIVRPP 117 (442)
Q Consensus 96 ~ll~~~ig~~lg~l~~~~~~~P 117 (442)
+++.+++|+++|+++.|++.-.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 5778999999999999987655
No 24
>COG2323 Predicted membrane protein [Function unknown]
Probab=28.54 E-value=1.8e+02 Score=28.16 Aligned_cols=80 Identities=5% Similarity=0.046 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChhhhhhhhhhhHhhhhhHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 013452 31 IAKVFTICFLGFLMASKYVNILPASGRKLLNGLVFTLLLPCLIFSQLGQAITLQKMIEWWFIPINVVLGTISGSLIGLVI 110 (442)
Q Consensus 31 vlkVlli~~~G~~lA~~r~giL~~~~~k~lS~lv~~~FlP~LiFskla~~lt~~~l~~~w~ipv~~ll~~~ig~~lg~l~ 110 (442)
++|-+++..+++++. | --.+|++|++-..=|.=.+++..++.....++=...|...+..++..++..+++|+.
T Consensus 8 ~ir~vi~~~~l~l~~--r-----i~Gkr~isqmt~fd~vv~i~iG~i~~~~i~~~~i~~~~~~~~~~~~~~l~~~l~~l~ 80 (224)
T COG2323 8 AIRSVIGYLILLLLL--R-----IMGKRSISQMTIFDFVVMITLGSIAGDAIFDDDVSILPTIIAILTLALLQILLSYLS 80 (224)
T ss_pred HHHHHHHHHHHHHHH--H-----HhCcCccccCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666665 3 357899999999999999999999999988887777777776777777888888887
Q ss_pred HHHhCCC
Q 013452 111 AYIVRPP 117 (442)
Q Consensus 111 ~~~~~~P 117 (442)
.|--++-
T Consensus 81 ~ks~~~r 87 (224)
T COG2323 81 LKSRKLR 87 (224)
T ss_pred hccHHHH
Confidence 7765543
No 25
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.10 E-value=92 Score=23.48 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013452 90 WFIPINVVLGTISGSLIGLVIAYIVR 115 (442)
Q Consensus 90 w~ipv~~ll~~~ig~~lg~l~~~~~~ 115 (442)
++..+..++.+++|+++||++....+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~ 43 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSR 43 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778889999999998876533
No 26
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=26.51 E-value=1.6e+02 Score=26.39 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=33.9
Q ss_pred HHHHhhhcccchhhhhh---hhH-HHHHHHHHHHHHHHHHHHHHHHhCCC
Q 013452 72 LIFSQLGQAITLQKMIE---WWF-IPINVVLGTISGSLIGLVIAYIVRPP 117 (442)
Q Consensus 72 LiFskla~~lt~~~l~~---~w~-ipv~~ll~~~ig~~lg~l~~~~~~~P 117 (442)
++-..+|.++|.+++++ +|. .-+..+++..++.+.+|++.|.++.|
T Consensus 55 iiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~ 104 (156)
T TIGR03082 55 VIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVD 104 (156)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34577888888776555 443 44445666788999999999999988
No 27
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=26.17 E-value=76 Score=32.06 Aligned_cols=134 Identities=15% Similarity=0.145 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhhc-cCCCChhhhhhhhhhhHhhhhhHHHHHhhhcccchhhhhhhhH-HHHHHHHHHHHHHHHHHHHH
Q 013452 34 VFTICFLGFLMASKY-VNILPASGRKLLNGLVFTLLLPCLIFSQLGQAITLQKMIEWWF-IPINVVLGTISGSLIGLVIA 111 (442)
Q Consensus 34 Vlli~~~G~~lA~~r-~giL~~~~~k~lS~lv~~~FlP~LiFskla~~lt~~~l~~~w~-ipv~~ll~~~ig~~lg~l~~ 111 (442)
+.+-..+|..++ . .--.++..++.+. ..-..+++ +=..=+|-+++++++.+++. ..+-.++.......+++.+.
T Consensus 29 ~~~AillG~~i~--n~~~~~~~~~~~Gi~-~~~k~~Lr-~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg 104 (305)
T PF03601_consen 29 LLIAILLGMLIG--NLFFGLPARFKPGIK-FSSKKLLR-LGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLG 104 (305)
T ss_pred HHHHHHHHHHHh--hhccCCcHHHHhHHH-HHHHHHHH-HHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 456667787777 2 1122233333332 11112222 11233788999999999987 33445666777788888888
Q ss_pred -HHhCCCCCCcceEEEEEeccCCCchHHHHHHHhhcCC-----CCCCCChhhHhhhhhHHHHHHHHHhhheeEEeeeccc
Q 013452 112 -YIVRPPYPYFKFTIIHIGIGNIGNVPLVLIAALCRDP-----SNPFAEPETCSTQMTAYISFGQWVGAIILYTYVFHML 185 (442)
Q Consensus 112 -~~~~~P~~~r~~v~~a~~fgN~~sLPl~li~sl~~~~-----~~pf~~~~~~~~rg~aY~~i~~~~~~~~~ws~g~~~l 185 (442)
|.+|+|++..-.+ +++ .|+|... ...-..++++...+++-+.++-.+..++ +.+-++.+
T Consensus 105 ~r~~~l~~~~~~Li-a~G-------------tsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~-~P~l~~~l 169 (305)
T PF03601_consen 105 RRLFGLDRKLAILI-AAG-------------TSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFL-YPLLGHAL 169 (305)
T ss_pred HHHhCCCHHHHHHH-Hhh-------------cccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHH-HHHHHHHh
Confidence 9999998765433 221 2333321 0111234556677777777777765443 34433444
Q ss_pred C
Q 013452 186 A 186 (442)
Q Consensus 186 ~ 186 (442)
.
T Consensus 170 ~ 170 (305)
T PF03601_consen 170 G 170 (305)
T ss_pred C
Confidence 3
No 28
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.84 E-value=1.1e+02 Score=24.02 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 013452 88 EWWFIPINVVLGTISGSLIGLVIAY 112 (442)
Q Consensus 88 ~~w~ipv~~ll~~~ig~~lg~l~~~ 112 (442)
++|...+.+++..++|.+.|+.++|
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3565568888899999999988775
No 29
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=25.77 E-value=2e+02 Score=30.09 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=48.4
Q ss_pred hhhhhhhhhhhHhhhhhHHHHHhhhcccchhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 013452 54 ASGRKLLNGLVFTLLLPCLIFSQLGQAITLQKMIEWWFI-PINVVLGTISGSLIGLVIAYIVRPPYP 119 (442)
Q Consensus 54 ~~~~k~lS~lv~~~FlP~LiFskla~~lt~~~l~~~w~i-pv~~ll~~~ig~~lg~l~~~~~~~P~~ 119 (442)
++..+++..+-..+|.| +-|.++|-+++++.+.+.|.. .+...+....=.+..++..|.++.+++
T Consensus 264 ~~l~~~i~~~~~~~fip-lFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~ 329 (397)
T COG0475 264 HELEEKIEPFGDGLFIP-LFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARLLGFSKR 329 (397)
T ss_pred HHHHHHHHhHHhHHHHH-HHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 57888888888888887 779999999999999998877 333333333444557888889986543
No 30
>PRK05326 potassium/proton antiporter; Reviewed
Probab=24.76 E-value=3.9e+02 Score=29.17 Aligned_cols=100 Identities=16% Similarity=0.122 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhccCCCChhhhhhhhhhhHhhhhhHHHHHhhhcccchhhhhhhhHHHH-HHHHHHHHH-HHHHHHHHHHh
Q 013452 37 ICFLGFLMASKYVNILPASGRKLLNGLVFTLLLPCLIFSQLGQAITLQKMIEWWFIPI-NVVLGTISG-SLIGLVIAYIV 114 (442)
Q Consensus 37 i~~~G~~lA~~r~giL~~~~~k~lS~lv~~~FlP~LiFskla~~lt~~~l~~~w~ipv-~~ll~~~ig-~~lg~l~~~~~ 114 (442)
....|..++ +......+..++..+-.-.++.|. +|..+|-.++++++.+.+..-+ ..++...++ .+..++..+.+
T Consensus 250 ~~iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~~~~ 326 (562)
T PRK05326 250 VYLAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSLLPF 326 (562)
T ss_pred HHHHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 335566665 333334444444555555677765 7999999999998877643222 111222222 22234444566
Q ss_pred CCCCCCcceEEEEEeccCCCchHHHHHH
Q 013452 115 RPPYPYFKFTIIHIGIGNIGNVPLVLIA 142 (442)
Q Consensus 115 ~~P~~~r~~v~~a~~fgN~~sLPl~li~ 142 (442)
|.|.+.+-++--+ |-=|..|+++-.
T Consensus 327 ~~~~~e~~~i~~~---g~RG~v~i~lA~ 351 (562)
T PRK05326 327 RFNLREKLFISWV---GLRGAVPIVLAT 351 (562)
T ss_pred CCCHhhhheeeee---cchhHHHHHHHH
Confidence 7776655444332 457778876653
No 31
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=23.90 E-value=3.8e+02 Score=26.07 Aligned_cols=84 Identities=12% Similarity=0.099 Sum_probs=55.5
Q ss_pred ChhhhhhhhhhhHhhhhhHHHHHhhhcccchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceEEEEEecc
Q 013452 53 PASGRKLLNGLVFTLLLPCLIFSQLGQAITLQKMIEWW-FIPINVVLGTISGSLIGLVIAYIVRPPYPYFKFTIIHIGIG 131 (442)
Q Consensus 53 ~~~~~k~lS~lv~~~FlP~LiFskla~~lt~~~l~~~w-~ipv~~ll~~~ig~~lg~l~~~~~~~P~~~r~~v~~a~~fg 131 (442)
+=|.=..=++....+.=|+-+-=-+-=+=..+.+|++| +|-...++...+++..++++.|.+..+++... +..+
T Consensus 53 ~Y~~Y~~g~~~i~~lLgPAtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~-----Sl~P 127 (230)
T COG1346 53 SYEDYMKGGQWINFLLGPATVALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELIL-----SLLP 127 (230)
T ss_pred CHHHHhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-----Hhcc
Confidence 33333444566666677766544444444778888877 66777777899999999999999999965433 2334
Q ss_pred CCCchHHHHH
Q 013452 132 NIGNVPLVLI 141 (442)
Q Consensus 132 N~~sLPl~li 141 (442)
-+-.-|+++=
T Consensus 128 kSvTTpiAm~ 137 (230)
T COG1346 128 KSVTTPIAME 137 (230)
T ss_pred cccccHHHHH
Confidence 4445566553
No 32
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=23.31 E-value=5.4e+02 Score=27.11 Aligned_cols=104 Identities=17% Similarity=0.415 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhhccCCCChhhhhhhhhhh-----HhhhhhHHHHHhhh---cccchhhhhhhhHHHHHHHHHHHHHHHHH
Q 013452 36 TICFLGFLMASKYVNILPASGRKLLNGLV-----FTLLLPCLIFSQLG---QAITLQKMIEWWFIPINVVLGTISGSLIG 107 (442)
Q Consensus 36 li~~~G~~lA~~r~giL~~~~~k~lS~lv-----~~~FlP~LiFskla---~~lt~~~l~~~w~ipv~~ll~~~ig~~lg 107 (442)
+...+-.++. +.|+++++.-|.+++.. .++|.+||+--++= +.+=.+.++++ +|. .++..+.+.+.|
T Consensus 81 l~~fvaa~~v--~~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~--i~~-il~g~v~A~~~g 155 (438)
T COG3493 81 LALFVAAYLV--FYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRY--IPP-ILAGMVGAAAVG 155 (438)
T ss_pred HHHHHHHHHH--HhccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhh--hHH-HHHHHHHHHHHH
Confidence 3344444555 78999999999998875 68999999987762 23345556665 333 344555556666
Q ss_pred HHHHHHhCCCCC--CcceEEEEEeccC-CCchHHHHHHHh
Q 013452 108 LVIAYIVRPPYP--YFKFTIIHIGIGN-IGNVPLVLIAAL 144 (442)
Q Consensus 108 ~l~~~~~~~P~~--~r~~v~~a~~fgN-~~sLPl~li~sl 144 (442)
.++.-++..+.+ .-+.+++.-+=|| -|.+|++.+.|=
T Consensus 156 ~lVG~~~G~~~~d~~m~~vlPIM~GG~GaGavPLS~iYs~ 195 (438)
T COG3493 156 ILVGLLFGLSFQDTMMYVVLPIMGGGMGAGAVPLSEIYSS 195 (438)
T ss_pred HHHHHHhCCChHHeeeeEEeeeccCCCCCCcccHHHHHHH
Confidence 677777776543 4455666544444 488999999664
No 33
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=22.69 E-value=1.4e+02 Score=32.92 Aligned_cols=131 Identities=16% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCChhhhhhhhhh-hHhhhhhHHHHHhhhcccchh-----------------------
Q 013452 29 LPIAKVFTICFLGFLMASKYVNILPASGRKLLNGL-VFTLLLPCLIFSQLGQAITLQ----------------------- 84 (442)
Q Consensus 29 ~pvlkVlli~~~G~~lA~~r~giL~~~~~k~lS~l-v~~~FlP~LiFskla~~lt~~----------------------- 84 (442)
+|++-+++++++|+++. |..+ |.+|== +--++.=+|++.+++.++..+
T Consensus 10 ~p~l~lfl~i~lG~~lG--~iki------~~~~LG~~~gvLfvgl~~G~~g~~i~~~v~~~gl~lFvy~vG~~~Gp~Ff~ 81 (562)
T TIGR03802 10 NPEIALFLSLALGYLIG--KIKF------GSFQLGGVAGSLIVAVLIGQLGIQIDPGVKAVFFALFIFAIGYEVGPQFFA 81 (562)
T ss_pred CHHHHHHHHHHHhHhhc--ceEE------eeeecchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhccCHHHHH
Q ss_pred hhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceEEEEEeccCCCchHHHHHHHhhcCCCCCCCChhhHhhhhh
Q 013452 85 KMIEW-WFIPINVVLGTISGSLIGLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVLIAALCRDPSNPFAEPETCSTQMT 163 (442)
Q Consensus 85 ~l~~~-w~ipv~~ll~~~ig~~lg~l~~~~~~~P~~~r~~v~~a~~fgN~~sLPl~li~sl~~~~~~pf~~~~~~~~rg~ 163 (442)
++++= |..-+.+++..++|.++.+...|+++.|...-.++.+ ++--|+-.|=-+ .+++.+-+..+=.......+-++
T Consensus 82 ~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~Gl~a-GalT~tp~l~aA-~~a~~~~~~~~~~~~~~~~~~av 159 (562)
T TIGR03802 82 SLKKDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAGLAA-GGLTQSAVIGTA-GDAIEKLGLSPEQKTAYQGNVAV 159 (562)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh-chhhccHHHHHH-HHHHHhcCCCcchhhccccccce
Q ss_pred HHHHHH
Q 013452 164 AYISFG 169 (442)
Q Consensus 164 aY~~i~ 169 (442)
+|..-|
T Consensus 160 gYav~Y 165 (562)
T TIGR03802 160 AYAVTY 165 (562)
T ss_pred eeehhh
No 34
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=22.48 E-value=2.3e+02 Score=28.75 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=43.2
Q ss_pred HHHHhhhcccchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceEEEEEeccCCCchHHHHHHHhhcCCC
Q 013452 72 LIFSQLGQAITLQKMIEWW-FIPINVVLGTISGSLIGLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVLIAALCRDPS 149 (442)
Q Consensus 72 LiFskla~~lt~~~l~~~w-~ipv~~ll~~~ig~~lg~l~~~~~~~P~~~r~~v~~a~~fgN~~sLPl~li~sl~~~~~ 149 (442)
+.+--.+.+|+.++....- =--+-.+.=+++|.++|+++.|++... |+ .|==|++++.+++.+++
T Consensus 53 ~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~----g~---------~Gls~laiiaa~~~~Ng 118 (312)
T PRK12460 53 AFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAE----GI---------FGLSGLAIVAAMSNSNG 118 (312)
T ss_pred HHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcc----cc---------cchHHHHHHHHHhcCcH
Confidence 3444578999988754431 111212234899999999999999865 31 23448999999987653
No 35
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=22.24 E-value=99 Score=31.59 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhhhhhhhhhhHhhhhhHHHHHhhhcccchhhhhhh-hHHHHHHHHHHHHHHHHHHHH
Q 013452 32 AKVFTICFLGFLMASKYVNILPASGRKLLNGLVFTLLLPCLIFSQLGQAITLQKMIEW-WFIPINVVLGTISGSLIGLVI 110 (442)
Q Consensus 32 lkVlli~~~G~~lA~~r~giL~~~~~k~lS~lv~~~FlP~LiFskla~~lt~~~l~~~-w~ipv~~ll~~~ig~~lg~l~ 110 (442)
+++++...+|..+. | ++++-++..++= +++.+|+-.|. +|.+++.+++.+- +..++-.++..++...+++.+
T Consensus 174 i~allplliG~~lg----n-l~~~l~~~~~~G-i~~lLp~~~~~-lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~ 246 (326)
T PRK05274 174 VGAVLPLLVGFILG----N-LDPELRQFLGKA-VPVLIPFFAFA-LGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLA 246 (326)
T ss_pred hHHHHHHHHHHHHH----h-HHHhhHHHhcCC-cEEEHHHHHHH-HhcceeHhHHHhcCCcchhhhhhHhhccchhhHhH
Confidence 55568999999888 3 666655555443 44499999888 9999999999777 445554444444455557777
Q ss_pred HHHhCCCCCCcceEEEEEeccCCCchHHH
Q 013452 111 AYIVRPPYPYFKFTIIHIGIGNIGNVPLV 139 (442)
Q Consensus 111 ~~~~~~P~~~r~~v~~a~~fgN~~sLPl~ 139 (442)
-|+++..+...+. -...+.||.--=|-+
T Consensus 247 ~Rl~~~~~g~~g~-a~~ttaG~aic~pAA 274 (326)
T PRK05274 247 DRLIGGGNGVAGA-AAGSTAGNAVATPAA 274 (326)
T ss_pred hheeecCCCcchH-HHHHHHHHHHHHHHH
Confidence 7888544332222 222345565444444
No 36
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=21.71 E-value=2e+02 Score=30.41 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=56.9
Q ss_pred ccCCCChh---hhhhhhhhhHhhhhhHHHHHhhhcccchhhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Q 013452 48 YVNILPAS---GRKLLNGLVFTLLLPCLIFSQLGQAITLQKMIEWWFIP--INVVLGTISGSLIGLVIAYIVRPPYPYFK 122 (442)
Q Consensus 48 r~giL~~~---~~k~lS~lv~~~FlP~LiFskla~~lt~~~l~~~w~ip--v~~ll~~~ig~~lg~l~~~~~~~P~~~r~ 122 (442)
-.|+++++ ..|+.++.+.+-++|.|++.==....+++++.+.-=.+ +-++...+.-.+-++++.|+++.-+-...
T Consensus 286 ~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsA 365 (414)
T PF03390_consen 286 AFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESA 365 (414)
T ss_pred HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 47899864 67889999999999999975333335666665543111 11111122223445677788887644433
Q ss_pred eEEE--EEeccCCCchHHHHHHHhhcCCCCCC
Q 013452 123 FTII--HIGIGNIGNVPLVLIAALCRDPSNPF 152 (442)
Q Consensus 123 ~v~~--a~~fgN~~sLPl~li~sl~~~~~~pf 152 (442)
.+.+ ++.-|.+||+ +++.|=.+-+..||
T Consensus 366 ItaGLC~an~GGtGDv--AVLsAa~RM~LmpF 395 (414)
T PF03390_consen 366 ITAGLCMANMGGTGDV--AVLSAANRMELMPF 395 (414)
T ss_pred HHhhhcccCCCCCCcc--hheehhhhcccccH
Confidence 3332 2334555665 43333322234566
No 37
>PF02340 PRRSV_Env: PRRSV putative envelope protein; InterPro: IPR003434 This family consists of a conserved probable envelope protein or ORF2 in Porcine reproductive and respiratory syndrome virus (PRRSV) also in the family is a minor structural protein from lactate dehydrogenase-elevating virus.
Probab=20.48 E-value=3e+02 Score=26.27 Aligned_cols=111 Identities=18% Similarity=0.305 Sum_probs=68.6
Q ss_pred hhhhhhhhhhhhccCCc-hhHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCCCChhhhhhhhhhhHhhhhhHHHHHhhhc
Q 013452 2 REFIGRMIMETQKAGGE-SLLGTVKIAVLPIAKVFTI-CFLGFLMASKYVNILPASGRKLLNGLVFTLLLPCLIFSQLGQ 79 (442)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~li~~A~~pvlkVlli-~~~G~~lA~~r~giL~~~~~k~lS~lv~~~FlP~LiFskla~ 79 (442)
|||+-+-++..|...|+ +-.+.+--+- ++.+-- ..+|. .. +...+..|+++.++.. +|++==-....
T Consensus 90 dd~is~Riys~M~~~Gq~~W~qv~t~~~---Le~Is~~~~v~~-fq--~~a~~E~~~C~~L~sr-----Lp~i~n~~~~~ 158 (234)
T PF02340_consen 90 DDMISRRIYSHMEHSGQAAWKQVVTEAT---LENISELDVVGH-FQ--HLAAMEREACTYLASR-----LPAIQNLRAVG 158 (234)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHhhHHH---HHHhcccchHHH-HH--HHHHHHHHHHHHHHHH-----hHHHHHhhhcc
Confidence 78998888889966666 4444444333 233222 22232 23 4567788888887765 34441111112
Q ss_pred ccchh-------------------hhhhh--hHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCcce
Q 013452 80 AITLQ-------------------KMIEW--WFIPINVVLGTISGSLIGLVIAYIVRPP--YPYFKF 123 (442)
Q Consensus 80 ~lt~~-------------------~l~~~--w~ipv~~ll~~~ig~~lg~l~~~~~~~P--~~~r~~ 123 (442)
++|++ ++.++ |.+-+-+=+.-.+...+...++-.+|.| +..+|+
T Consensus 159 Nvti~~~~tl~~t~~I~~~P~~r~~l~~~~~wLis~hsSiFSsVaAs~tL~IVl~LR~P~lrsvFgF 225 (234)
T PF02340_consen 159 NVTIKYNSTLNQTVAIFPGPGNRPKLHDFHQWLISVHSSIFSSVAASVTLFIVLWLRIPALRSVFGF 225 (234)
T ss_pred ceEEEeccccceEEEEecCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhccc
Confidence 44433 24444 9998888888888888899999999999 665554
No 38
>COG4129 Predicted membrane protein [Function unknown]
Probab=20.06 E-value=3.3e+02 Score=27.87 Aligned_cols=94 Identities=17% Similarity=0.291 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhhhhhhhhhhHhhhhhHHHHHhhhcccchhhhhhhh---------HHH
Q 013452 23 TVKIAVLPIAKVFTICFLGFLMASKYVNILPASGRKLLNGLVFTLLLPCLIFSQLGQAITLQKMIEWW---------FIP 93 (442)
Q Consensus 23 li~~A~~pvlkVlli~~~G~~lA~~r~giL~~~~~k~lS~lv~~~FlP~LiFskla~~lt~~~l~~~w---------~ip 93 (442)
.+..+++-..+-++-|.+|.++|---.=+++ ..-..=-+.+.++.|++++-++...+....+.-.. +.-
T Consensus 49 t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g--~~~~~~~v~~~i~i~~~~~~~~~~g~~~~~~~~~~ii~~~~~~~~~~ 126 (332)
T COG4129 49 TIKRSLKRALQRLLGNALGAILAVLFFLLFG--QNPIAFGVVLLIIIPLLVLLKLENGVVPITVGVLHILVAAMIPLFLI 126 (332)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHcC--ccHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcccchhHH
Confidence 3455566667777777777776631111111 11122246678889999999998855444333322 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC
Q 013452 94 INVVLGTISGSLIGLVIAYIVRPPY 118 (442)
Q Consensus 94 v~~ll~~~ig~~lg~l~~~~~~~P~ 118 (442)
.|=++...+|.+.|.+++.++.+|+
T Consensus 127 ~~r~l~~~vG~~~a~lvn~~~~~~~ 151 (332)
T COG4129 127 FNRFLLVFVGVGVAFLVNLVMPPPD 151 (332)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCch
Confidence 3356778999999999999988886
Done!