Query 013452
Match_columns 442
No_of_seqs 116 out of 303
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:50:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 96.9 0.003 1E-07 62.9 9.2 134 284-438 20-156 (332)
2 3zux_A Transporter, ASBTNM; tr 84.5 1.4 4.8E-05 43.4 6.3 80 93-180 231-310 (332)
3 4ev6_A Magnesium transport pro 7.5 4E+02 0.014 25.3 4.8 61 312-379 276-339 (339)
4 1q90_G Cytochrome B6F complex 7.4 1.4E+02 0.0047 19.6 0.8 10 289-298 6-15 (37)
5 1zcd_A Na(+)/H(+) antiporter 1 6.6 1.1E+02 0.0039 30.4 0.3 96 53-148 248-352 (388)
6 1q90_M Cytochrome B6F complex 6.5 6.1E+02 0.021 16.7 4.3 24 92-115 9-32 (39)
7 2nwl_A GLTPH, glutamate sympor 6.3 7.8E+02 0.027 24.4 6.3 61 58-118 44-111 (422)
8 2k1a_A Integrin alpha-IIB; sin 6.2 6.5E+02 0.022 16.8 4.2 34 343-380 5-38 (42)
9 1vf5_F Protein PET M; photosyn 5.7 6.5E+02 0.022 16.2 4.1 24 92-115 8-31 (35)
10 1wrg_A LH-1, light-harvesting 5.4 6.2E+02 0.021 17.9 3.5 37 80-116 10-46 (55)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=96.87 E-value=0.003 Score=62.86 Aligned_cols=134 Identities=9% Similarity=0.003 Sum_probs=99.2
Q ss_pred hHHHHHHHHhhccchhhhhhhccCCCcchhHHHHHHHhccchhhHHHHhhccccCCCCCCCC--CCchhhHhHHHHHHHh
Q 013452 284 PIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAK--LGFRTTAAIIFGRLVL 361 (442)
Q Consensus 284 p~iaailg~iigliPpLk~lff~~~~pL~~l~ds~~~lG~a~VPl~llvLGa~La~gp~~~~--~~~~~iv~i~~~Rlii 361 (442)
-++..+++.++|..-|=.. .++.. .-...+.++++..|.++... +-.+ -.+|......+.++++
T Consensus 20 ~~l~i~~~~~lg~~~P~~~---------~~~~~----~i~~~l~~~mf~~G~~l~~~-~l~~~~~~~~~~~~~l~~~~vi 85 (332)
T 3zux_A 20 FSLWAALFAAAAFFAPDTF---------KWAGP----YIPWLLGIIMFGMGLTLKPS-DFDILFKHPKVVIIGVIAQFAI 85 (332)
T ss_dssp HHHHHHHHHHHHHHCGGGT---------GGGGG----GHHHHHHHHHHHHHHHCCGG-GGHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcchhh---------hhhHH----HHHHHHHHHHHHHHhCCCHH-HHHHHHhCcHHHHHHHHHHHHH
Confidence 3677777777776633211 11111 22347889999999999852 1111 2467778888999999
Q ss_pred hhhhHHHHHHHHhhcCCccCCChHHHHHHHhcccCchHHHHHHHHhhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013452 362 VPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILYL 438 (442)
Q Consensus 362 lPiigi~iv~~a~k~g~~~~~Dpv~~Fv~~L~~~~PpA~~l~~itql~~~~-~e~s~il~w~Y~~~~~~~t~~~~~~l 438 (442)
+|+++.++.+.. + .||.+...+++..|.|++.+-..+|++.+-. ..+.+.-..+-.++++++|+|+.+++
T Consensus 86 ~Pll~~~l~~~~------~-l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 86 MPATAWCLSKLL------N-LPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHHHT------T-CCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh------C-CChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999877643 3 4999999999999999999988899998755 55666666899999999999998875
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=84.50 E-value=1.4 Score=43.40 Aligned_cols=80 Identities=24% Similarity=0.277 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcceEEEEEeccCCCchHHHHHHHhhcCCCCCCCChhhHhhhhhHHHHHHHHH
Q 013452 93 PINVVLGTISGSLIGLVIAYIVRPPYPYFKFTIIHIGIGNIGNVPLVLIAALCRDPSNPFAEPETCSTQMTAYISFGQWV 172 (442)
Q Consensus 93 pv~~ll~~~ig~~lg~l~~~~~~~P~~~r~~v~~a~~fgN~~sLPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~i~~~~ 172 (442)
-+..++...+++++||.+.|.+|.+++.+.-+...|+..|+ .+-+.+..+. |+++....--...|-..-...
T Consensus 231 ~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs-~lai~lA~~~-------F~~~p~~alp~~iy~~~q~i~ 302 (332)
T 3zux_A 231 FAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS-GLAAALAAAH-------FAAAPVVAVPGALFSVWHNIS 302 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH-HHHHHHHHHH-------STTCGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH-HHHHHHHHHH-------cCCCchHHHHHHHHHHHHHHH
Confidence 34467778999999999999999999888777776788888 3444444433 432223333344465555555
Q ss_pred hhheeEEe
Q 013452 173 GAIILYTY 180 (442)
Q Consensus 173 ~~~~~ws~ 180 (442)
+.++.+-|
T Consensus 303 ~~~la~~~ 310 (332)
T 3zux_A 303 GSLLATYW 310 (332)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=7.50 E-value=4e+02 Score=25.35 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=36.0
Q ss_pred hhHHHHHHHhccchhhHHHH--hhccccCCCCCC-CCCCchhhHhHHHHHHHhhhhhHHHHHHHHhhcCCc
Q 013452 312 FFFTDSCIILGEAMIPCILL--ALGGNLVDGPGS-AKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFI 379 (442)
Q Consensus 312 ~~l~ds~~~lG~a~VPl~ll--vLGa~La~gp~~-~~~~~~~iv~i~~~RliilPiigi~iv~~a~k~g~~ 379 (442)
+-++..++.+...+.|+.++ +-|-|+...|.. .+.|++.++++ +=+++++.++.++|-||+
T Consensus 276 N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~-------m~~~~~~~~~~fkrk~WL 339 (339)
T 4ev6_A 276 NQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMAL-------MVVIIMIFVYIFRRSGWI 339 (339)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHH-------HHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHH-------HHHHHHHHHHHHHHcCCC
Confidence 34556677777888888876 567777654542 22233333332 223445555667888885
No 4
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=7.42 E-value=1.4e+02 Score=19.58 Aligned_cols=10 Identities=30% Similarity=0.673 Sum_probs=6.8
Q ss_pred HHHHhhccch
Q 013452 289 ILAMGIGAVP 298 (442)
Q Consensus 289 ilg~iigliP 298 (442)
+.|+++|+||
T Consensus 6 L~GIVlGlip 15 (37)
T 1q90_G 6 LCGIVLGLVP 15 (37)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHhhHH
Confidence 4567777776
No 5
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=6.59 E-value=1.1e+02 Score=30.44 Aligned_cols=96 Identities=19% Similarity=0.180 Sum_probs=60.5
Q ss_pred ChhhhhhhhhhhHhhhhhHHHHHhhhcccchh---hhhhh--hHHHHHHHHHHHHH-HHHHHHHHHHh--CCCCCCc-ce
Q 013452 53 PASGRKLLNGLVFTLLLPCLIFSQLGQAITLQ---KMIEW--WFIPINVVLGTISG-SLIGLVIAYIV--RPPYPYF-KF 123 (442)
Q Consensus 53 ~~~~~k~lS~lv~~~FlP~LiFskla~~lt~~---~l~~~--w~ipv~~ll~~~ig-~~lg~l~~~~~--~~P~~~r-~~ 123 (442)
.++..+.+...+..+++|-.-|.+.|=+++.+ .+.+- |-+-+-.++.=.+| ++.+|+..|+. |+|+.++ +-
T Consensus 248 ~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~ 327 (388)
T 1zcd_A 248 AKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQ 327 (388)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHH
Confidence 45677888889999999999999999999874 33221 11111112222223 23355666554 6787654 34
Q ss_pred EEEEEeccCCCchHHHHHHHhhcCC
Q 013452 124 TIIHIGIGNIGNVPLVLIAALCRDP 148 (442)
Q Consensus 124 v~~a~~fgN~~sLPl~li~sl~~~~ 148 (442)
..+.+.-.|++-..=.++.+++-++
T Consensus 328 ~~~vg~L~gigftmsL~Ia~laf~~ 352 (388)
T 1zcd_A 328 IMVVGILCGIGFTMSIFIASLAFGS 352 (388)
T ss_dssp GTTHHHHTTCCHHHHHHHHHHHSTT
T ss_pred HHHHHHHhccchHHHHHHHHHhccC
Confidence 4666677788887777788886543
No 6
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=6.45 E-value=6.1e+02 Score=16.71 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 013452 92 IPINVVLGTISGSLIGLVIAYIVR 115 (442)
Q Consensus 92 ipv~~ll~~~ig~~lg~l~~~~~~ 115 (442)
+..-....+.+|..+|+++-|+-+
T Consensus 9 ~A~i~~~L~LvGla~Gf~LLkiqg 32 (39)
T 1q90_M 9 TALTMVGMTLVGLAIGFVLLRVES 32 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Confidence 444455678889999999988753
No 7
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=6.25 E-value=7.8e+02 Score=24.43 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=43.9
Q ss_pred hhhhhhhH---hhhhhHHHHHhhhcccc-h--hhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 013452 58 KLLNGLVF---TLLLPCLIFSQLGQAIT-L--QKMIEW-WFIPINVVLGTISGSLIGLVIAYIVRPPY 118 (442)
Q Consensus 58 k~lS~lv~---~~FlP~LiFskla~~lt-~--~~l~~~-w~ipv~~ll~~~ig~~lg~l~~~~~~~P~ 118 (442)
+-++++-+ ....|=|+|..+...+. . +++.++ +-.-+++++++.++..+|.++..++++-.
T Consensus 44 ~~~G~lFi~llkmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~pg~ 111 (422)
T 2nwl_A 44 KPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGA 111 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 44454432 45677789999988874 4 455454 45667788889999999999999998764
No 8
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=6.24 E-value=6.5e+02 Score=16.75 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=22.9
Q ss_pred CCCCCchhhHhHHHHHHHhhhhhHHHHHHHHhhcCCcc
Q 013452 343 SAKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIP 380 (442)
Q Consensus 343 ~~~~~~~~iv~i~~~RliilPiigi~iv~~a~k~g~~~ 380 (442)
...++++.++..+++=++++.++ +...+|.|+..
T Consensus 5 ~~~vp~wiIi~s~l~GLllL~li----~~~LwK~GFFk 38 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLGGLLLLTIL----VLAMWKVGFFK 38 (42)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHH----HHHHHHTTTTC
T ss_pred cCCcchHHHHHHHHHHHHHHHHH----HHHHHHcCccc
Confidence 45678888888877777665543 34566777764
No 9
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=5.69 E-value=6.5e+02 Score=16.19 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 013452 92 IPINVVLGTISGSLIGLVIAYIVR 115 (442)
Q Consensus 92 ipv~~ll~~~ig~~lg~l~~~~~~ 115 (442)
+.+-....+.+|..+|+++-|+-+
T Consensus 8 ~A~i~~~LvLvGla~Gf~LLkiqg 31 (35)
T 1vf5_F 8 AALLSFGLIFVGWGLGVLLLKIQG 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhheeec
Confidence 344455668889999999888753
No 10
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=5.38 E-value=6.2e+02 Score=17.94 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=29.6
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013452 80 AITLQKMIEWWFIPINVVLGTISGSLIGLVIAYIVRP 116 (442)
Q Consensus 80 ~lt~~~l~~~w~ipv~~ll~~~ig~~lg~l~~~~~~~ 116 (442)
-+|.++.+|++-+.+.....+..=.+++.++....|+
T Consensus 10 GLT~~EAqEfH~~f~~~~~~F~~iAvvAH~L~~~wrP 46 (55)
T 1wrg_A 10 GITEGEAKEFHKIFTSSILVFFGVAAFAHLLVWIWRP 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3788999999998888888887777778777776664
Done!