Query 013452
Match_columns 442
No_of_seqs 116 out of 303
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 10:50:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013452.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013452hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 15.5 21 0.0015 21.0 0.6 29 278-306 5-33 (34)
2 d1q90g_ f.23.26.1 (G:) PetG su 7.2 69 0.005 18.3 0.8 11 288-298 5-15 (30)
3 d1lghb_ f.3.1.1 (B:) Light-har 3.9 4.7E+02 0.035 16.0 4.9 38 79-116 4-41 (43)
4 d1jo5a_ f.3.1.1 (A:) Light-har 3.7 4.4E+02 0.032 16.5 3.3 38 79-116 9-46 (48)
5 d2q66a1 a.160.1.1 (A:202-351) 3.7 3.6E+02 0.026 21.0 3.5 46 372-424 16-63 (150)
6 d1q79a1 a.160.1.1 (A:215-364) 3.4 4E+02 0.029 20.7 3.5 46 372-424 16-63 (150)
7 d1jb0m_ f.23.19.1 (M:) Subunit 3.1 1.8E+02 0.013 16.5 0.7 12 289-300 9-20 (31)
8 d2nwwa1 f.49.1.1 (A:12-416) Pr 3.0 1.1E+03 0.082 20.2 7.0 62 58-119 33-101 (405)
9 d1tbaa_ a.15.1.1 (A:) TAF(II)2 2.9 1.8E+02 0.013 19.6 0.6 14 51-64 37-50 (67)
10 d1q90r_ f.23.12.1 (R:) ISP sub 2.8 1.9E+02 0.014 17.6 0.6 29 278-306 10-38 (39)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=15.45 E-value=21 Score=21.04 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=24.4
Q ss_pred ccccCchHHHHHHHHhhccchhhhhhhcc
Q 013452 278 KQILQPPIIASILAMGIGAVPFLKKLIFT 306 (442)
Q Consensus 278 ~~~~~Pp~iaailg~iigliPpLk~lff~ 306 (442)
++|||=-+.|.+-|...|..-|+-+-|+.
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfip 33 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFIP 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcCC
Confidence 56777779999999999999888887764
No 2
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.15 E-value=69 Score=18.26 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=7.8
Q ss_pred HHHHHhhccch
Q 013452 288 SILAMGIGAVP 298 (442)
Q Consensus 288 ailg~iigliP 298 (442)
.+.|++.|+||
T Consensus 5 ll~GivlGlip 15 (30)
T d1q90g_ 5 LLCGIVLGLVP 15 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhHHHhhHH
Confidence 35677778887
No 3
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=3.85 E-value=4.7e+02 Score=15.99 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=30.3
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013452 79 QAITLQKMIEWWFIPINVVLGTISGSLIGLVIAYIVRP 116 (442)
Q Consensus 79 ~~lt~~~l~~~w~ipv~~ll~~~ig~~lg~l~~~~~~~ 116 (442)
+.+|-++.+|+--+.+.....|..-.+++.+++.+.||
T Consensus 4 sGLT~~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 4 SGLTEEEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKP 41 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45788888888878888888888888888888887775
No 4
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.73 E-value=4.4e+02 Score=16.53 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=29.2
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013452 79 QAITLQKMIEWWFIPINVVLGTISGSLIGLVIAYIVRP 116 (442)
Q Consensus 79 ~~lt~~~l~~~w~ipv~~ll~~~ig~~lg~l~~~~~~~ 116 (442)
+-+|-++.+|+--+.+.....|..-.+++.++..+.||
T Consensus 9 tGLT~~EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrP 46 (48)
T d1jo5a_ 9 TGLTDEQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp GGGHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34677888888777777777787778888888887765
No 5
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.71 E-value=3.6e+02 Score=21.01 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=27.8
Q ss_pred HHhhcCCccCCChHHHHHHHhcccCchHHHHHHHHhhcCch--HHHHHHHHHHHH
Q 013452 372 LADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG--REAAAVLFWVHI 424 (442)
Q Consensus 372 ~a~k~g~~~~~Dpv~~Fv~~L~~~~PpA~~l~~itql~~~~--~e~s~il~w~Y~ 424 (442)
+|.+-|++- +++ =.+.+.==|+..+.+||++... ..+..-||-.|.
T Consensus 16 WAk~RGIYs--n~~-----GylGGI~waILvArvCql~p~a~~~~ll~~FF~~ys 63 (150)
T d2q66a1 16 WAQRRAVYA--NIF-----GFPGGVAWAMLVARICQLYPNACSAVILNRFFIILS 63 (150)
T ss_dssp HHHHTTCCC--GGG-----TSCCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHccccc--ccc-----cccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 566667652 321 1223344567778889999644 667777776664
No 6
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.42 E-value=4e+02 Score=20.73 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=27.7
Q ss_pred HHhhcCCccCCChHHHHHHHhcccCchHHHHHHHHhhcCch--HHHHHHHHHHHH
Q 013452 372 LADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG--REAAAVLFWVHI 424 (442)
Q Consensus 372 ~a~k~g~~~~~Dpv~~Fv~~L~~~~PpA~~l~~itql~~~~--~e~s~il~w~Y~ 424 (442)
+|++-|++- +++ =.+.+.==|+..+.+||++... ..+..-||-.|.
T Consensus 16 WAk~RGIYs--n~~-----GflGGI~waILvArvCql~Pna~~~~ll~~FF~~ys 63 (150)
T d1q79a1 16 WAKRHNIYS--NIL-----GFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFS 63 (150)
T ss_dssp HHHHTTCBC--TTT-----TSBCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHccccc--ccc-----cccHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 577777662 331 1223344466778888999644 667777776654
No 7
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=3.07 E-value=1.8e+02 Score=16.46 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=7.6
Q ss_pred HHHHhhccchhh
Q 013452 289 ILAMGIGAVPFL 300 (442)
Q Consensus 289 ilg~iigliPpL 300 (442)
.++++|+++|-+
T Consensus 9 ~valvial~pg~ 20 (31)
T d1jb0m_ 9 YVALVIALLPAV 20 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456677777744
No 8
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.95 E-value=1.1e+03 Score=20.20 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=41.8
Q ss_pred hhhhhhhHh---hhhhHHHHHhhhccc-ch--hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 013452 58 KLLNGLVFT---LLLPCLIFSQLGQAI-TL--QKMIEWW-FIPINVVLGTISGSLIGLVIAYIVRPPYP 119 (442)
Q Consensus 58 k~lS~lv~~---~FlP~LiFskla~~l-t~--~~l~~~w-~ipv~~ll~~~ig~~lg~l~~~~~~~P~~ 119 (442)
+-++++-.+ ...+=|+|..+...+ +. ++++++. -.-.++++++.++..+|+++...+++...
T Consensus 33 ~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt~iA~~igl~~~~~~~pg~~ 101 (405)
T d2nwwa1 33 KPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAG 101 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344444433 345667888887776 23 3444443 45666778899999999999999998754
No 9
>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=2.91 E-value=1.8e+02 Score=19.64 Aligned_cols=14 Identities=21% Similarity=0.109 Sum_probs=12.8
Q ss_pred CCChhhhhhhhhhh
Q 013452 51 ILPASGRKLLNGLV 64 (442)
Q Consensus 51 iL~~~~~k~lS~lv 64 (442)
+||++.+|+++.+.
T Consensus 37 ~lD~E~k~~L~~Ls 50 (67)
T d1tbaa_ 37 GFDAELRENIGSLS 50 (67)
T ss_dssp SCCTTTHHHHTTCT
T ss_pred ccCHHHHHHHHHHh
Confidence 89999999999876
No 10
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.83 E-value=1.9e+02 Score=17.58 Aligned_cols=29 Identities=3% Similarity=-0.146 Sum_probs=17.9
Q ss_pred ccccCchHHHHHHHHhhccchhhhhhhcc
Q 013452 278 KQILQPPIIASILAMGIGAVPFLKKLIFT 306 (442)
Q Consensus 278 ~~~~~Pp~iaailg~iigliPpLk~lff~ 306 (442)
+++||=-++|++-+-..|+.-|.-+.|+.
T Consensus 10 R~~MNLll~G~~~~~~~g~l~py~~fFvP 38 (39)
T d1q90r_ 10 RNIMNLILAGGAGLPITTLALGYGAFFVP 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccchhhhhhccceeEEecC
Confidence 34444457777777777766666665553
Done!