Query 013454
Match_columns 442
No_of_seqs 179 out of 702
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 10:53:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 6.9E-18 2.4E-22 132.7 4.9 48 4-55 7-54 (63)
2 4gat_A Nitrogen regulatory pro 99.7 1.6E-17 5.4E-22 131.5 4.2 50 2-55 7-56 (66)
3 2vut_I AREA, nitrogen regulato 99.6 7.4E-17 2.5E-21 118.4 3.8 42 5-50 2-43 (43)
4 1gnf_A Transcription factor GA 99.6 2.2E-16 7.4E-21 117.4 4.7 43 3-49 3-45 (46)
5 2kae_A GATA-type transcription 99.6 2.1E-16 7E-21 126.8 -0.1 50 2-54 6-55 (71)
6 4hc9_A Trans-acting T-cell-spe 99.5 5.5E-15 1.9E-19 127.1 4.4 48 4-55 59-106 (115)
7 4hc9_A Trans-acting T-cell-spe 99.4 2.5E-13 8.7E-18 116.8 5.1 75 4-86 5-79 (115)
8 2kqz_A Proteasomal ubiquitin r 94.9 0.024 8.2E-07 51.0 4.8 75 302-378 33-113 (155)
9 2kr0_A Proteasomal ubiquitin r 94.3 0.051 1.7E-06 55.6 5.9 78 302-379 289-370 (411)
10 1dl6_A Transcription factor II 49.8 8 0.00027 29.2 2.0 32 4-38 11-42 (58)
11 3cng_A Nudix hydrolase; struct 47.2 6.2 0.00021 34.0 1.2 34 2-35 1-34 (189)
12 1k81_A EIF-2-beta, probable tr 44.5 3 0.0001 29.1 -1.0 29 6-35 2-30 (36)
13 2b0o_E UPLC1; arfgap, structur 44.3 9.7 0.00033 35.2 2.1 36 4-41 42-77 (301)
14 3k7a_M Transcription initiatio 43.3 12 0.0004 36.5 2.6 30 4-34 21-50 (345)
15 1qyp_A RNA polymerase II; tran 41.8 3.7 0.00013 30.4 -0.9 34 5-38 16-55 (57)
16 2crr_A Stromal membrane-associ 40.0 21 0.00072 31.4 3.5 36 4-41 29-64 (141)
17 2olm_A Nucleoporin-like protei 39.0 13 0.00043 32.8 1.9 36 4-41 25-60 (140)
18 1pft_A TFIIB, PFTFIIBN; N-term 35.9 11 0.00037 27.0 0.8 32 4-38 5-36 (50)
19 2owa_A Arfgap-like finger doma 35.6 18 0.00061 31.9 2.3 36 4-41 36-71 (138)
20 3pt3_A E3 ubiquitin-protein li 34.5 14 0.00047 31.7 1.3 38 308-345 30-68 (118)
21 2iqj_A Stromal membrane-associ 34.2 19 0.00065 31.5 2.2 36 4-41 27-62 (134)
22 3e13_X Putative iron-uptake AB 32.8 49 0.0017 29.3 4.7 57 312-368 251-318 (322)
23 2g2k_A EIF-5, eukaryotic trans 31.3 9 0.00031 35.1 -0.3 29 6-34 98-127 (170)
24 2e9h_A EIF-5, eukaryotic trans 30.0 12 0.0004 34.0 0.2 30 5-34 104-134 (157)
25 2crw_A ARF GAP 3, ADP-ribosyla 26.3 38 0.0013 30.3 2.8 37 3-41 28-64 (149)
26 4bbr_M Transcription initiatio 26.2 16 0.00055 35.8 0.4 29 5-34 22-50 (345)
27 2p57_A GTPase-activating prote 26.1 23 0.0008 31.6 1.4 36 4-41 37-72 (144)
28 3dwd_A ADP-ribosylation factor 25.5 35 0.0012 30.6 2.5 37 3-41 37-73 (147)
29 1tfi_A Transcriptional elongat 24.4 15 0.00051 27.2 -0.2 34 4-37 9-48 (50)
30 3h0g_L DNA-directed RNA polyme 24.2 22 0.00075 27.9 0.7 32 5-41 22-53 (63)
31 3k1f_M Transcription initiatio 22.4 27 0.00092 32.9 1.1 30 4-34 21-50 (197)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.70 E-value=6.9e-18 Score=132.66 Aligned_cols=48 Identities=31% Similarity=0.655 Sum_probs=45.5
Q ss_pred CCccccCCCCCCCcccCCCCCCcccchhhhhhHHhcCCCCCCCCCcCCCCCC
Q 013454 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD 55 (442)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~G~l~~~RPLs~rkd~i 55 (442)
...|.||+++.||+||+||.|+ +|||||||||+++++. ||+.+++++|
T Consensus 7 ~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~~---RP~~~~~~~i 54 (63)
T 3dfx_A 7 GTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNIN---RPLTMKKEGI 54 (63)
T ss_dssp TCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSSC---CCGGGCCSSC
T ss_pred CCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCCC---CCcCcCCCcc
Confidence 4789999999999999999997 8999999999999987 9999999988
No 2
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.68 E-value=1.6e-17 Score=131.52 Aligned_cols=50 Identities=34% Similarity=0.740 Sum_probs=47.1
Q ss_pred CCCCccccCCCCCCCcccCCCCCCcccchhhhhhHHhcCCCCCCCCCcCCCCCC
Q 013454 2 GKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD 55 (442)
Q Consensus 2 Gk~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~G~l~~~RPLs~rkd~i 55 (442)
|..+.|.||++++||+||+||.|. +|||||||||++|+++ ||+.++++.|
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~---RP~~~k~~~i 56 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV---RPLSLKTDVI 56 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCSC---CCGGGCCSCC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCCC---Cchhhccccc
Confidence 567899999999999999999997 8999999999999998 9999999888
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.64 E-value=7.4e-17 Score=118.36 Aligned_cols=42 Identities=40% Similarity=0.884 Sum_probs=39.2
Q ss_pred CccccCCCCCCCcccCCCCCCcccchhhhhhHHhcCCCCCCCCCcC
Q 013454 5 GPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHA 50 (442)
Q Consensus 5 r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~G~l~~~RPLs~ 50 (442)
+.|.+|+++.||+||+||.|+ +|||||||||++||++ ||+++
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~---RP~~l 43 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV---RPLSL 43 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC---CCCCC
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCC---CCCCC
Confidence 689999999999999999997 8999999999999998 88764
No 4
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.62 E-value=2.2e-16 Score=117.40 Aligned_cols=43 Identities=42% Similarity=0.891 Sum_probs=39.7
Q ss_pred CCCccccCCCCCCCcccCCCCCCcccchhhhhhHHhcCCCCCCCCCc
Q 013454 3 KQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLH 49 (442)
Q Consensus 3 k~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~G~l~~~RPLs 49 (442)
..+.|.||+++.||+||+||.|+ +|||||||||++|+++ ||+.
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~---RP~~ 45 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQN---RPLI 45 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSC---CCCC
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCC---CCCC
Confidence 46889999999999999999996 8999999999999998 7864
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.57 E-value=2.1e-16 Score=126.83 Aligned_cols=50 Identities=32% Similarity=0.468 Sum_probs=41.4
Q ss_pred CCCCccccCCCCCCCcccCCCCCCcccchhhhhhHHhcCCCCCCCCCcCCCCC
Q 013454 2 GKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEP 54 (442)
Q Consensus 2 Gk~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~G~l~~~RPLs~rkd~ 54 (442)
+..+.|+||+|+.||+||+|+.+..+|||||||||+++++. ||+.+..+.
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~~---RP~~~~~~~ 55 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKT---RPVTAVNKY 55 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHSC---CCTHHHHHH
T ss_pred CCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCCC---CCcccchhh
Confidence 35689999999999999995444448999999999999987 998888754
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.51 E-value=5.5e-15 Score=127.05 Aligned_cols=48 Identities=31% Similarity=0.647 Sum_probs=45.5
Q ss_pred CCccccCCCCCCCcccCCCCCCcccchhhhhhHHhcCCCCCCCCCcCCCCCC
Q 013454 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD 55 (442)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~G~l~~~RPLs~rkd~i 55 (442)
...|+||+++.||+||+||.| .+|||||||||++|++. ||+.++++.|
T Consensus 59 ~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~---rp~~~~~~~i 106 (115)
T 4hc9_A 59 GTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNIN---RPLTMKKEGI 106 (115)
T ss_dssp TCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC---CCGGGCCSSC
T ss_pred cccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCC---CCccccccch
Confidence 478999999999999999999 67999999999999998 9999999988
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.38 E-value=2.5e-13 Score=116.76 Aligned_cols=75 Identities=29% Similarity=0.509 Sum_probs=55.2
Q ss_pred CCccccCCCCCCCcccCCCCCCcccchhhhhhHHhcCCCCCCCCCcCCCCCCccccccccccccccccccchhhhhhccC
Q 013454 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDHRVSKVKSISINKNKDVKVLKRKS 83 (442)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~G~l~~~RPLs~rkd~i~~~~~R~~k~K~~si~k~Ke~k~lKRK~ 83 (442)
.+.|.||+++.||+||+|+.| .+|||||||||+++|++ ||+..++... ....+......++....+.+||+.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~n---RP~~KpKKR~----~~~~~~~~~C~~C~t~~tp~WRr~ 76 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQN---RPLIKPKRRL----SAARRAGTSCANCQTTTTTLWRRN 76 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC---CCCSSCCCCC----CCCCCTTCCCTTTCCSCCSSCEEC
T ss_pred CCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhcccc---cccccccccc----cccccccccCCCcCCCCcceeEEC
Confidence 589999999999999999999 57999999999999998 7765443221 111222334557777777788886
Q ss_pred CCC
Q 013454 84 NYD 86 (442)
Q Consensus 84 n~~ 86 (442)
..+
T Consensus 77 ~~g 79 (115)
T 4hc9_A 77 ANG 79 (115)
T ss_dssp TTS
T ss_pred CCC
Confidence 554
No 8
>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A
Probab=94.93 E-value=0.024 Score=50.98 Aligned_cols=75 Identities=25% Similarity=0.522 Sum_probs=58.4
Q ss_pred ecccccccc---HHHHHhhhCHHHHHHHHhcCCCCCC-CCCChhHHhhhchhhhhhhHHHHHHHHhhcccc--cccCCCC
Q 013454 302 EIDLNDILN---FKEFVGHLTHEEQQQLLKYLPLNDT-TVFPDSLNSMFDSLQFKENISSFQQLLAEGVFD--LSFLGVA 375 (442)
Q Consensus 302 ~idl~dv~n---f~ef~~~~t~eeq~~l~k~lp~~d~-~~~~~sl~~mf~s~qfk~n~~~fqql~~~gvf~--~s~~~~k 375 (442)
.|||.|||. -..+++ +++-+++|+-|||.-.. .+=++-|+....||||...+..|..-|..|-+. ++-.|..
T Consensus 33 ~~~L~dvLt~e~l~~ll~--d~~~~~~L~~~LP~~~~~~~~~e~L~~~l~SPQF~Qal~~fs~AL~sG~l~~vl~qfgl~ 110 (155)
T 2kqz_A 33 QVDLASVLTPEIMAPILA--NADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLP 110 (155)
T ss_dssp HHHHHHHTCTTTSHHHHH--SHHHHHHHHHHSCSSCCCCSSHHHHHSSCCSHHHHHHHHHHHHHHHHTSSHHHHHHTTCC
T ss_pred CCCHHHHhCHHHHHHHHc--CHHHHHHHHhhCCCCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHhCCcHHHHHHcCCC
Confidence 689999994 444544 44558999999997542 246688999999999999999999999999887 3445665
Q ss_pred hhh
Q 013454 376 TED 378 (442)
Q Consensus 376 ~e~ 378 (442)
.+.
T Consensus 111 ~~~ 113 (155)
T 2kqz_A 111 AEA 113 (155)
T ss_dssp HHH
T ss_pred hhh
Confidence 553
No 9
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=94.26 E-value=0.051 Score=55.64 Aligned_cols=78 Identities=26% Similarity=0.479 Sum_probs=61.1
Q ss_pred eccccccccHHHHHhhhCH-HHHHHHHhcCCCCCC-CCCChhHHhhhchhhhhhhHHHHHHHHhhcccc--cccCCCChh
Q 013454 302 EIDLNDILNFKEFVGHLTH-EEQQQLLKYLPLNDT-TVFPDSLNSMFDSLQFKENISSFQQLLAEGVFD--LSFLGVATE 377 (442)
Q Consensus 302 ~idl~dv~nf~ef~~~~t~-eeq~~l~k~lp~~d~-~~~~~sl~~mf~s~qfk~n~~~fqql~~~gvf~--~s~~~~k~e 377 (442)
.|||.|||.=|.-...|.+ |-+++||-|||.-+. .+=++-|++...||||..-|..|-+-|..|-+. ++-.|.+.|
T Consensus 289 ~v~L~dvLt~e~l~pll~d~e~~erL~~~LP~~~~~~~t~e~L~e~l~SPQF~QaL~~fs~AL~sGqL~pll~qfgL~~~ 368 (411)
T 2kr0_A 289 QVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAE 368 (411)
T ss_dssp HHHGGGTSCHHHHHHHHTSHHHHHHHGGGCCSSCCCCCSHHHHTTSCCSHHHHHHHHHHHHHHHHTSSTHHHHHHTCCHH
T ss_pred CCCHHHhhCHHHHHHHhcCHHHHHHHHhhCCCCcCcCCCHHHHHHHhcCHHHHHHHHHHHHHHhcCCchHHHHHhCCChh
Confidence 6999999986655556555 456889999998653 346688999999999999999999999999876 344466555
Q ss_pred hH
Q 013454 378 DC 379 (442)
Q Consensus 378 ~~ 379 (442)
..
T Consensus 369 ~~ 370 (411)
T 2kr0_A 369 AV 370 (411)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 10
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=49.79 E-value=8 Score=29.24 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=22.3
Q ss_pred CCccccCCCCCCCcccCCCCCCcccchhhhhhHHh
Q 013454 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRT 38 (442)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~ 38 (442)
...|.+|+.+. +-.....| .++|..||+-+.-
T Consensus 11 ~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl~e 42 (58)
T 1dl6_A 11 RVTCPNHPDAI--LVEDYRAG-DMICPECGLVVGD 42 (58)
T ss_dssp CCSBTTBSSSC--CEECSSSC-CEECTTTCCEECC
T ss_pred cccCcCCCCCc--eeEeCCCC-eEEeCCCCCEEec
Confidence 35799998755 44444456 5699999995544
No 11
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=47.22 E-value=6.2 Score=34.02 Aligned_cols=34 Identities=21% Similarity=0.410 Sum_probs=26.8
Q ss_pred CCCCccccCCCCCCCcccCCCCCCcccchhhhhh
Q 013454 2 GKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSR 35 (442)
Q Consensus 2 Gk~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~ 35 (442)
|..+-|..||+..+.....|..+....|-.||.+
T Consensus 1 ~~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~ 34 (189)
T 3cng_A 1 GHMKFCSQCGGEVILRIPEGDTLPRYICPKCHTI 34 (189)
T ss_dssp --CCBCTTTCCBCEEECCTTCSSCEEEETTTTEE
T ss_pred CCcccCchhCCccccccccCCCCcceECCCCCCc
Confidence 5678999999999887777777777799999953
No 12
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=44.49 E-value=3 Score=29.14 Aligned_cols=29 Identities=31% Similarity=0.704 Sum_probs=21.7
Q ss_pred ccccCCCCCCCcccCCCCCCcccchhhhhh
Q 013454 6 PCYHCGVTSTPLWRNGPPEKPVLCNACGSR 35 (442)
Q Consensus 6 ~CsnCgTt~TPlWRrGp~G~~~LCNACGL~ 35 (442)
.|..|+...|-+-+.+..- -.-|+|||-.
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCCc
Confidence 5999999999998754322 2369999963
No 13
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=44.25 E-value=9.7 Score=35.23 Aligned_cols=36 Identities=25% Similarity=0.662 Sum_probs=28.0
Q ss_pred CCccccCCCCCCCcccCCCCCCcccchhhhhhHHhcCC
Q 013454 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 (442)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~G~ 41 (442)
...|+.|+... |.|-.-.-| ..+|-.|----|.-|+
T Consensus 42 n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~lg~ 77 (301)
T 2b0o_E 42 NSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHRELGV 77 (301)
T ss_dssp TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHHhhCC
Confidence 57899999965 899999999 6799999554444443
No 14
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=43.34 E-value=12 Score=36.49 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=21.1
Q ss_pred CCccccCCCCCCCcccCCCCCCcccchhhhh
Q 013454 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGS 34 (442)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL 34 (442)
...|.+|+.+.+-+-.+-..| .++|..||+
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~ 50 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGL 50 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSC-SCCCSSSCC
T ss_pred CCcCcCCCCCCCceEEECCCC-CEecCCCCe
Confidence 467999999753233334456 469999999
No 15
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=41.82 E-value=3.7 Score=30.40 Aligned_cols=34 Identities=29% Similarity=0.652 Sum_probs=23.9
Q ss_pred CccccCCCCC----CCcccCCCCCC--cccchhhhhhHHh
Q 013454 5 GPCYHCGVTS----TPLWRNGPPEK--PVLCNACGSRWRT 38 (442)
Q Consensus 5 r~CsnCgTt~----TPlWRrGp~G~--~~LCNACGL~~k~ 38 (442)
..|..||-.. +-+||.+.++. -+.|..||-.|+-
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred eECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 4699999854 33577766552 2589999988764
No 16
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.96 E-value=21 Score=31.43 Aligned_cols=36 Identities=22% Similarity=0.517 Sum_probs=28.6
Q ss_pred CCccccCCCCCCCcccCCCCCCcccchhhhhhHHhcCC
Q 013454 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 (442)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~G~ 41 (442)
...|+.|++. -|.|-.-..| ..+|-.|.-..|.-|+
T Consensus 29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~ 64 (141)
T 2crr_A 29 NKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNLGV 64 (141)
T ss_dssp GSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHHCT
T ss_pred CCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcCCC
Confidence 3689999987 5889988888 6799999766666564
No 17
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=39.00 E-value=13 Score=32.81 Aligned_cols=36 Identities=19% Similarity=0.555 Sum_probs=28.0
Q ss_pred CCccccCCCCCCCcccCCCCCCcccchhhhhhHHhcCC
Q 013454 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 (442)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~G~ 41 (442)
...|++|+.. -|.|-.-..| ..+|-.|.--.|.-|+
T Consensus 25 N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 25 NRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTTSSS
T ss_pred CCcCCCCCCC-CCCceeeccC-EEEchhccchhccCCC
Confidence 4789999986 6889988888 6799999765554443
No 18
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=35.85 E-value=11 Score=26.99 Aligned_cols=32 Identities=22% Similarity=0.458 Sum_probs=21.7
Q ss_pred CCccccCCCCCCCcccCCCCCCcccchhhhhhHHh
Q 013454 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRT 38 (442)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~ 38 (442)
...|.+|+.+ ++-.....| .++|..||+-|.-
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~~e 36 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG-EIVCAKCGYVIEE 36 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT-EEEESSSCCBCCC
T ss_pred cEeCcCCCCc--ceEEcCCCC-eEECcccCCcccc
Confidence 4679999873 443333335 5799999996554
No 19
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=35.56 E-value=18 Score=31.91 Aligned_cols=36 Identities=25% Similarity=0.657 Sum_probs=29.0
Q ss_pred CCccccCCCCCCCcccCCCCCCcccchhhhhhHHhcCC
Q 013454 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 (442)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~G~ 41 (442)
...|+.|+... |.|-.-..| ..+|-.|.-..|.-|+
T Consensus 36 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~ 71 (138)
T 2owa_A 36 NRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRKMGV 71 (138)
T ss_dssp GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHTTCT
T ss_pred CCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhCCCC
Confidence 47899999875 999998888 6799999776666554
No 20
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=34.53 E-value=14 Score=31.69 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=24.5
Q ss_pred cccHHHHHhhhCHHHHHHHHhcCCCCCCCCCC-hhHHhh
Q 013454 308 ILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFP-DSLNSM 345 (442)
Q Consensus 308 v~nf~ef~~~~t~eeq~~l~k~lp~~d~~~~~-~sl~~m 345 (442)
|-.|=+.++.||+|||.+||+|.-.-|.+.+. ..++.|
T Consensus 30 i~wFW~vv~~~~~eer~~fL~FvTGs~rlP~~~~Gf~~l 68 (118)
T 3pt3_A 30 KRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPM 68 (118)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHSCC------------
T ss_pred HHHHHHHHHHCCHHHHHHHHhHhcCCCCCCCcccCcccC
Confidence 67799999999999999999998877766553 355544
No 21
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=34.23 E-value=19 Score=31.47 Aligned_cols=36 Identities=22% Similarity=0.512 Sum_probs=29.0
Q ss_pred CCccccCCCCCCCcccCCCCCCcccchhhhhhHHhcCC
Q 013454 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 (442)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~G~ 41 (442)
...|++|+... |.|-.-..| ..+|-.|.--.|.-|+
T Consensus 27 N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~lG~ 62 (134)
T 2iqj_A 27 NKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRNLGV 62 (134)
T ss_dssp GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhcCCC
Confidence 46899999875 889998888 6799999766666564
No 22
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A
Probab=32.82 E-value=49 Score=29.26 Aligned_cols=57 Identities=19% Similarity=0.333 Sum_probs=35.6
Q ss_pred HHHHhhhCHHH-HHHHHh---cCCCCCCCCCChhHHhh-------hchhhhhhhHHHHHHHHhhcccc
Q 013454 312 KEFVGHLTHEE-QQQLLK---YLPLNDTTVFPDSLNSM-------FDSLQFKENISSFQQLLAEGVFD 368 (442)
Q Consensus 312 ~ef~~~~t~ee-q~~l~k---~lp~~d~~~~~~sl~~m-------f~s~qfk~n~~~fqql~~~gvf~ 368 (442)
.+|+..|+.+| |..+.+ ++|....+..|+.++.. ++-.+.-+|..-..+|+.+.-|+
T Consensus 251 ~~fi~fl~s~e~q~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~~ 318 (322)
T 3e13_X 251 KKFMEFMLSPEIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR 318 (322)
T ss_dssp HHHHHHHTSHHHHHHHHHTTCCEESSTTSCCCHHHHHHCCCCBCCSCHHHHHTTHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCHHHHHHHHhcCcccCCccCCCCcccCCCccccCCCcCCHHHHHHhHHHHHHHHHHhccc
Confidence 35777776555 555554 58999999999988763 23334445555555666655444
No 23
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=31.33 E-value=9 Score=35.10 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=21.6
Q ss_pred ccccCCCCCCCcccCCCCC-Ccccchhhhh
Q 013454 6 PCYHCGVTSTPLWRNGPPE-KPVLCNACGS 34 (442)
Q Consensus 6 ~CsnCgTt~TPlWRrGp~G-~~~LCNACGL 34 (442)
.|..|+...|-+-+....+ --.-|+|||-
T Consensus 98 lC~~C~sPdT~L~k~~~~r~~~l~C~ACGa 127 (170)
T 2g2k_A 98 LCPECENPETDLHVNPKKQTIGNSCKACGY 127 (170)
T ss_dssp SCTTTSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCCCCccEEEEecCCCEEEEEccccCC
Confidence 5999999999998832212 2347999997
No 24
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.00 E-value=12 Score=33.96 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=21.7
Q ss_pred CccccCCCCCCCcccCCCC-CCcccchhhhh
Q 013454 5 GPCYHCGVTSTPLWRNGPP-EKPVLCNACGS 34 (442)
Q Consensus 5 r~CsnCgTt~TPlWRrGp~-G~~~LCNACGL 34 (442)
-.|..|+...|-+-+.... ---.-|+|||-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa 134 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGY 134 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCC
Confidence 3699999999999862111 12347999997
No 25
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.26 E-value=38 Score=30.30 Aligned_cols=37 Identities=27% Similarity=0.704 Sum_probs=29.2
Q ss_pred CCCccccCCCCCCCcccCCCCCCcccchhhhhhHHhcCC
Q 013454 3 KQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 (442)
Q Consensus 3 k~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~G~ 41 (442)
..+.|++|+.. -|.|-.-..| ..+|-.|.-..|.-|+
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~ 64 (149)
T 2crw_A 28 TNKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSLGV 64 (149)
T ss_dssp TTSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHHCT
T ss_pred CCCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccCCC
Confidence 35789999975 5889988888 6799999766666564
No 26
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=26.17 E-value=16 Score=35.79 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=20.2
Q ss_pred CccccCCCCCCCcccCCCCCCcccchhhhh
Q 013454 5 GPCYHCGVTSTPLWRNGPPEKPVLCNACGS 34 (442)
Q Consensus 5 r~CsnCgTt~TPlWRrGp~G~~~LCNACGL 34 (442)
..|.+|+...+-+--+-..| .++|..||+
T Consensus 22 ~~Cp~C~~~~~~lv~D~~~G-~~vC~~CGl 50 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFSEG-DVVCALCGL 50 (345)
T ss_dssp CCCSSCCCSSCCEEEEGGGT-EEEETTTCB
T ss_pred CcCCCCCCCCCceeEECCCC-cEEeCCCCC
Confidence 57999998444443333456 469999999
No 27
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=26.11 E-value=23 Score=31.56 Aligned_cols=36 Identities=28% Similarity=0.729 Sum_probs=28.8
Q ss_pred CCccccCCCCCCCcccCCCCCCcccchhhhhhHHhcCC
Q 013454 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 (442)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~G~ 41 (442)
.+.|++|+... |.|-.-..| ..+|-.|.-..|.-|+
T Consensus 37 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~ 72 (144)
T 2p57_A 37 NKACFDCGAKN-PSWASITYG-VFLCIDCSGVHRSLGV 72 (144)
T ss_dssp GGBCTTTCCBS-CCEEEGGGT-EEECHHHHHHHHHHCT
T ss_pred CCcCCCCcCCC-CCeEEeccC-EEEhhhchHHHcCCCC
Confidence 47899999864 889988888 6699999776666564
No 28
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=25.52 E-value=35 Score=30.61 Aligned_cols=37 Identities=27% Similarity=0.692 Sum_probs=29.7
Q ss_pred CCCccccCCCCCCCcccCCCCCCcccchhhhhhHHhcCC
Q 013454 3 KQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 (442)
Q Consensus 3 k~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~G~ 41 (442)
..+.|+.|+... |.|-.-..| ..+|-.|.-..|.-|+
T Consensus 37 ~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~LG~ 73 (147)
T 3dwd_A 37 ENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGLGV 73 (147)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcCCC
Confidence 357899999875 899988888 6799999776666554
No 29
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=24.38 E-value=15 Score=27.18 Aligned_cols=34 Identities=29% Similarity=0.700 Sum_probs=23.9
Q ss_pred CCccccCCCCCCCcc----cCCCCCCc--ccchhhhhhHH
Q 013454 4 QGPCYHCGVTSTPLW----RNGPPEKP--VLCNACGSRWR 37 (442)
Q Consensus 4 ~r~CsnCgTt~TPlW----RrGp~G~~--~LCNACGL~~k 37 (442)
...|..|+-...-.| |.++++.- +.|..||-+|+
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 357999998776544 55554422 48999998876
No 30
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.17 E-value=22 Score=27.91 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=22.8
Q ss_pred CccccCCCCCCCcccCCCCCCcccchhhhhhHHhcCC
Q 013454 5 GPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 (442)
Q Consensus 5 r~CsnCgTt~TPlWRrGp~G~~~LCNACGL~~k~~G~ 41 (442)
-.|..||+..+.- .+.+.-|..||-+.-.+.+
T Consensus 22 Y~C~~Cg~~~~l~-----~~~~iRC~~CG~RILyK~R 53 (63)
T 3h0g_L 22 YLCADCGARNTIQ-----AKEVIRCRECGHRVMYKMR 53 (63)
T ss_dssp CBCSSSCCBCCCC-----SSSCCCCSSSCCCCCBCCC
T ss_pred EECCCCCCeeecC-----CCCceECCCCCcEEEEEec
Confidence 4799999988754 2345679999986655543
No 31
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=22.41 E-value=27 Score=32.86 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=20.1
Q ss_pred CCccccCCCCCCCcccCCCCCCcccchhhhh
Q 013454 4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGS 34 (442)
Q Consensus 4 ~r~CsnCgTt~TPlWRrGp~G~~~LCNACGL 34 (442)
...|..|+...+-+--.-..| .++|..||+
T Consensus 21 ~~~CPECGs~~t~IV~D~erG-E~VCsdCGL 50 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGL 50 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGT-EEEETTTCB
T ss_pred CeECcCCCCcCCeEEEeCCCC-EEEEcCCCC
Confidence 457999998644332222335 469999999
Done!