BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013456
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 10/156 (6%)
Query: 133 VLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPK 192
L+L V P P+ +L L++ + + +P + LETL + + +LP
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPA 144
Query: 193 SIWKVKTLRHLYLNDIHLQMSVQKPFVKP-------SLTNLRTLWGLSIGKKSPPLNWLE 245
SI + LR L + + +P L NL++L G +S P + +
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IA 203
Query: 246 NLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLR 281
NL +LK+L + + L + I L LE L LR
Sbjct: 204 NLQNLKSLKI--RNSPLSALGPAIHHLPKLEELDLR 237
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNIT 188
+L LDL ++ + I K L + L + +P + +L +L LD+ H +T
Sbjct: 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT 283
Query: 189 SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTL 229
SLP + L++ Y D M P+ +L NL+ L
Sbjct: 284 SLPAELGSCFQLKYFYFFD---NMVTTLPWEFGNLCNLQFL 321
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 116 GNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLH 175
+L ++ I+ LRVLDL LP +G L+Y + ++P G+L
Sbjct: 257 NSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLC 316
Query: 176 SLETLDMK 183
+L+ L ++
Sbjct: 317 NLQFLGVE 324
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 144 LPETIGKLQLLR--YVGLRRTFIDSIPKSLGDLHSLETLDMKHTNIT-SLPKSIWKVKTL 200
+P ++ L L Y+G + IP ++ L L L + HTN++ ++P + ++KTL
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 201 RHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSI 234
L + + PS+++L L G++
Sbjct: 128 VTL-----DFSYNALSGTLPPSISSLPNLVGITF 156
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 30/137 (21%)
Query: 172 GDLHS---LETLDMKHTNITSLP-KSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLR 227
GDL + L+ L +K + I ++ + + + +L HL L+D HL SL++
Sbjct: 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS----------SLSS-- 91
Query: 228 TLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY 287
+W LS LK L L+ N +T+L LT+L++LR+ ++ F
Sbjct: 92 --------------SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137
Query: 288 VPSDLAIGSLNNHKELK 304
+ L + EL+
Sbjct: 138 EIRRIDFAGLTSLNELE 154
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 72/178 (40%), Gaps = 33/178 (18%)
Query: 164 IDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHL-YLN---------------- 206
+D + L L +L+ LD+ H++I + ++K LRHL YLN
Sbjct: 338 LDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKE 397
Query: 207 -------DI---HLQMSV-QKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGL 255
D+ HL + PF L + L + + L L L DL++L L
Sbjct: 398 CPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHL--LAGLQDLRHLNL 455
Query: 256 ICNIASLGKI--TNLIQGLTSLESLRLRSINDFYVPSDLAIGSLN-NHKELKELYLLG 310
N G I TNL+Q + SLE L L S N + G N NH +L L G
Sbjct: 456 QGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 30/137 (21%)
Query: 172 GDLHS---LETLDMKHTNITSLP-KSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLR 227
GDL + L+ L +K + I ++ + + + +L HL L+D HL SL++
Sbjct: 70 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS----------SLSS-- 117
Query: 228 TLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY 287
+W LS LK L L+ N +T+L LT+L++LR+ ++ F
Sbjct: 118 --------------SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 163
Query: 288 VPSDLAIGSLNNHKELK 304
+ L + EL+
Sbjct: 164 EIRRIDFAGLTSLNELE 180
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 134 LDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKS 193
+D ED+ P + E + ++ + + F + + L+ LD+ T+++ LP
Sbjct: 238 MDDEDI-SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG 296
Query: 194 IWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLN----WLENLSD 249
+ + TL+ L L+ + + S +N +L LSI + L LENL +
Sbjct: 297 LVGLSTLKKLVLSANKFE-----NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351
Query: 250 LKNLGLICNIASLGKITNL-IQGLTSLESLRL 280
L+ L L + NL ++ L+ L+SL L
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 146 ETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL 205
+T+G+L++L + ID + L + +D+ H +TS SI + L+ +YL
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQ--HAFTSLKMMNHVDLSHNRLTS--SSIEALSHLKGIYL 528
Query: 206 NDIHLQMSVQKPFVKPSLTNLRTL 229
N +S+ P + P L+ RT+
Sbjct: 529 NLASNHISIILPSLLPILSQQRTI 552
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 143 VLPETIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLPKSIWK-VKTL 200
+ P + L LR + L + +I + + DL SLE L++ H N+ SLP ++ + L
Sbjct: 193 IRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRL 252
Query: 201 RHLYLN 206
++LN
Sbjct: 253 ERVHLN 258
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 143 VLPETIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLPKSIWK-VKTL 200
+ P + L LR + L + +I + + DL SLE L++ H N+ SLP ++ + L
Sbjct: 193 IRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRL 252
Query: 201 RHLYLN 206
++LN
Sbjct: 253 ERVHLN 258
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 22/137 (16%)
Query: 77 AEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDL 136
+E L+ LS+ P + Y GG + F N M+ Y +L
Sbjct: 601 SEQLNRLSTRNPCNITSRVY-----------GGHTSPTFDNNGSMMFLDMSYNML----- 644
Query: 137 EDVYKPVLPETIGKLQLLRYVGLRRTFID-SIPKSLGDLHSLETLDMKHTNITS-LPKSI 194
+P+ IG + L + L I SIP +GDL L LD+ + +P+++
Sbjct: 645 ----SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 195 WKVKTLRHLYLNDIHLQ 211
+ L + L++ +L
Sbjct: 701 SALTMLTEIDLSNNNLS 717
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 144 LPETIGKLQLLRYVGL-RRTFIDSIPKSLGDLHSLETLDMKHTNI--TSLPKSIWK 196
+P+ IG+L+ L + L +F +IP LGD SL LD+ +TN+ ++P +++K
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL-NTNLFNGTIPAAMFK 560
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 22/137 (16%)
Query: 77 AEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDL 136
+E L+ LS+ P + Y GG + F N M+ Y +L
Sbjct: 598 SEQLNRLSTRNPCNITSRVY-----------GGHTSPTFDNNGSMMFLDMSYNML----- 641
Query: 137 EDVYKPVLPETIGKLQLLRYVGLRRTFID-SIPKSLGDLHSLETLDMKHTNITS-LPKSI 194
+P+ IG + L + L I SIP +GDL L LD+ + +P+++
Sbjct: 642 ----SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 195 WKVKTLRHLYLNDIHLQ 211
+ L + L++ +L
Sbjct: 698 SALTMLTEIDLSNNNLS 714
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 144 LPETIGKLQLLRYVGL-RRTFIDSIPKSLGDLHSLETLDMKHTNI--TSLPKSIWK 196
+P+ IG+L+ L + L +F +IP LGD SL LD+ +TN+ ++P +++K
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL-NTNLFNGTIPAAMFK 557
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIW-KVKTLRHLYLND 207
++ + L I SIPK + L +L+ L++ + S+P ++ ++ +L++++L+D
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 320 ELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYI 360
+LPP + +LS + +SE MP + L EL+ LRL +H+ I
Sbjct: 49 DLPPRTKALSLSQNSISELRMPDISFLSELRVLRL-SHNRI 88
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 69/141 (48%), Gaps = 15/141 (10%)
Query: 154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPK-SIW-KVKTLRHLYLNDIHLQ 211
L+Y+ L + ++ + L LE LD +H+N+ + + S++ ++ L +L ++ H +
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 212 MSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENL-SDLKNLGLI----CNIASLGKIT 266
++ F L +L L + S N+L ++ ++L+NL + C + L
Sbjct: 435 VAFNGIF-----NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 267 NLIQGLTSLESLRLRSINDFY 287
L+SL+ L + S N+F+
Sbjct: 490 --FNSLSSLQVLNM-SHNNFF 507
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 69/141 (48%), Gaps = 15/141 (10%)
Query: 154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPK-SIW-KVKTLRHLYLNDIHLQ 211
L+Y+ L + ++ + L LE LD +H+N+ + + S++ ++ L +L ++ H +
Sbjct: 399 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 458
Query: 212 MSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENL-SDLKNLGLI----CNIASLGKIT 266
++ F L +L L + S N+L ++ ++L+NL + C + L
Sbjct: 459 VAFNGIF-----NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513
Query: 267 NLIQGLTSLESLRLRSINDFY 287
L+SL+ L + S N+F+
Sbjct: 514 --FNSLSSLQVLNM-SHNNFF 531
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 69/141 (48%), Gaps = 15/141 (10%)
Query: 154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPK-SIW-KVKTLRHLYLNDIHLQ 211
L+Y+ L + ++ + L LE LD +H+N+ + + S++ ++ L +L ++ H +
Sbjct: 80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139
Query: 212 MSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENL-SDLKNLGLI----CNIASLGKIT 266
++ F L +L L + S N+L ++ ++L+NL + C + L
Sbjct: 140 VAFNGIF-----NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194
Query: 267 NLIQGLTSLESLRLRSINDFY 287
L+SL+ L + S N+F+
Sbjct: 195 --FNSLSSLQVLNM-SHNNFF 212
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 34/185 (18%)
Query: 186 NITSLPKSIWKVKTLRHLYLNDIH-LQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWL 244
N+T+LP + K T+ HL N ++ ++ P+ + + NL
Sbjct: 21 NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR---------------- 64
Query: 245 ENLSDLKNLGLICNIASLGKITNLIQGL----TSLESLRLRSINDFYVPSDLAIGSLNNH 300
L+ L+ G + + +L N +Q L +L +L + ++ F + L +G+L
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSLPLGALRGL 123
Query: 301 KELKELYLLGRLPGPLKLHELPPN-------LRIFTLSLSYLSEDPMPVLGQLRELKALR 353
EL+ELYL G +L LPP L +L+ + L+E P +L L L L
Sbjct: 124 GELQELYLKGN-----ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 354 LFAHS 358
L +S
Sbjct: 179 LQENS 183
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 34/185 (18%)
Query: 186 NITSLPKSIWKVKTLRHLYLNDIH-LQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWL 244
N+T+LP + K T+ HL N ++ ++ P+ + + NL
Sbjct: 21 NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR---------------- 64
Query: 245 ENLSDLKNLGLICNIASLGKITNLIQGL----TSLESLRLRSINDFYVPSDLAIGSLNNH 300
L+ L+ G + + +L N +Q L +L +L + ++ F + L +G+L
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSLPLGALRGL 123
Query: 301 KELKELYLLGRLPGPLKLHELPPN-------LRIFTLSLSYLSEDPMPVLGQLRELKALR 353
EL+ELYL G +L LPP L +L+ + L+E P +L L L L
Sbjct: 124 GELQELYLKGN-----ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 354 LFAHS 358
L +S
Sbjct: 179 LQENS 183
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 34/185 (18%)
Query: 186 NITSLPKSIWKVKTLRHLYLNDIH-LQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWL 244
N+T+LP + K T+ HL N ++ ++ P+ + + NL
Sbjct: 21 NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR---------------- 64
Query: 245 ENLSDLKNLGLICNIASLGKITNLIQGL----TSLESLRLRSINDFYVPSDLAIGSLNNH 300
L+ L+ G + + +L N +Q L +L +L + ++ F + L +G+L
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSLPLGALRGL 123
Query: 301 KELKELYLLGRLPGPLKLHELPPN-------LRIFTLSLSYLSEDPMPVLGQLRELKALR 353
EL+ELYL G +L LPP L +L+ + L+E P +L L L L
Sbjct: 124 GELQELYLKGN-----ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 354 LFAHS 358
L +S
Sbjct: 179 LQENS 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,280,565
Number of Sequences: 62578
Number of extensions: 493818
Number of successful extensions: 1239
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1179
Number of HSP's gapped (non-prelim): 88
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)