Query 013456
Match_columns 442
No_of_seqs 282 out of 3942
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 04:02:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 5.2E-31 1.1E-35 280.5 19.0 386 10-429 471-903 (1153)
2 PLN00113 leucine-rich repeat r 100.0 9.5E-31 2.1E-35 278.0 15.7 298 127-432 138-465 (968)
3 KOG4658 Apoptotic ATPase [Sign 100.0 9.2E-31 2E-35 265.1 12.0 364 1-381 450-828 (889)
4 PLN00113 leucine-rich repeat r 100.0 1.4E-29 3.1E-34 269.0 17.7 307 125-437 160-493 (968)
5 KOG0444 Cytoskeletal regulator 99.9 5.2E-29 1.1E-33 231.0 -4.6 302 125-437 74-380 (1255)
6 KOG4194 Membrane glycoprotein 99.9 3.2E-27 7E-32 217.5 3.7 333 95-441 78-438 (873)
7 KOG4194 Membrane glycoprotein 99.9 1.5E-27 3.2E-32 219.7 1.0 304 129-440 78-413 (873)
8 KOG0444 Cytoskeletal regulator 99.9 1.7E-26 3.8E-31 214.4 -4.9 298 126-437 29-334 (1255)
9 PLN03210 Resistant to P. syrin 99.9 1.5E-21 3.3E-26 208.3 16.6 296 124-436 553-887 (1153)
10 KOG0472 Leucine-rich repeat pr 99.9 1.7E-24 3.8E-29 191.2 -5.1 95 339-437 427-545 (565)
11 KOG0472 Leucine-rich repeat pr 99.8 4.8E-23 1E-27 182.1 -6.4 323 92-440 65-479 (565)
12 KOG0618 Serine/threonine phosp 99.8 2.8E-21 6.1E-26 187.5 -2.9 106 323-431 359-464 (1081)
13 KOG0618 Serine/threonine phosp 99.8 3.8E-20 8.1E-25 179.8 2.9 287 131-437 47-425 (1081)
14 PRK15387 E3 ubiquitin-protein 99.8 8.9E-18 1.9E-22 167.6 13.5 260 129-434 201-460 (788)
15 PRK15370 E3 ubiquitin-protein 99.7 1.2E-16 2.7E-21 160.4 9.2 246 129-431 178-427 (754)
16 PRK15387 E3 ubiquitin-protein 99.6 8.3E-16 1.8E-20 153.6 10.9 258 97-411 203-460 (788)
17 KOG0617 Ras suppressor protein 99.6 2.1E-17 4.7E-22 130.0 -2.7 158 128-289 32-189 (264)
18 KOG4237 Extracellular matrix p 99.6 3E-17 6.5E-22 145.4 -4.3 126 98-235 70-199 (498)
19 cd00116 LRR_RI Leucine-rich re 99.6 1.5E-16 3.3E-21 148.1 -1.8 261 127-431 21-319 (319)
20 KOG0617 Ras suppressor protein 99.6 5.6E-17 1.2E-21 127.6 -5.1 155 147-311 28-183 (264)
21 PRK15370 E3 ubiquitin-protein 99.5 1.3E-14 2.8E-19 146.0 9.4 247 95-383 178-426 (754)
22 KOG4658 Apoptotic ATPase [Sign 99.5 1.3E-14 2.9E-19 148.2 8.9 324 91-439 519-868 (889)
23 cd00116 LRR_RI Leucine-rich re 99.5 9.4E-16 2E-20 142.7 -0.2 118 89-212 17-151 (319)
24 KOG4237 Extracellular matrix p 99.5 1.4E-15 3E-20 135.0 -3.3 269 129-407 67-357 (498)
25 PF14580 LRR_9: Leucine-rich r 99.1 2.5E-11 5.4E-16 100.0 3.5 129 126-281 16-148 (175)
26 KOG0532 Leucine-rich repeat (L 99.1 4.4E-12 9.6E-17 118.1 -1.0 133 128-290 74-206 (722)
27 KOG3207 Beta-tubulin folding c 99.1 2.1E-11 4.5E-16 110.2 1.2 62 150-211 119-185 (505)
28 KOG1909 Ran GTPase-activating 99.1 7.4E-12 1.6E-16 110.1 -2.0 185 126-310 27-250 (382)
29 KOG3207 Beta-tubulin folding c 99.1 3.5E-11 7.5E-16 108.8 1.2 186 243-432 141-339 (505)
30 KOG1909 Ran GTPase-activating 99.1 1.1E-11 2.3E-16 109.0 -2.1 252 146-431 24-310 (382)
31 COG4886 Leucine-rich repeat (L 99.0 5.6E-10 1.2E-14 107.0 7.0 85 127-211 114-199 (394)
32 KOG0532 Leucine-rich repeat (L 99.0 3.2E-11 6.9E-16 112.5 -3.0 158 127-292 96-253 (722)
33 KOG2120 SCF ubiquitin ligase, 99.0 1.9E-11 4E-16 105.2 -4.8 159 222-382 208-373 (419)
34 KOG1259 Nischarin, modulator o 98.9 1.6E-10 3.5E-15 99.7 -0.5 108 323-436 307-416 (490)
35 KOG2120 SCF ubiquitin ligase, 98.9 7.6E-11 1.7E-15 101.5 -3.9 183 225-410 186-377 (419)
36 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.3E-14 90.3 2.3 127 93-232 17-148 (175)
37 KOG4341 F-box protein containi 98.8 3E-10 6.6E-15 102.3 -3.0 107 323-429 320-436 (483)
38 COG4886 Leucine-rich repeat (L 98.8 5E-09 1.1E-13 100.4 4.3 178 92-287 113-291 (394)
39 KOG1259 Nischarin, modulator o 98.8 1.6E-09 3.5E-14 93.6 0.7 130 152-287 284-413 (490)
40 PF13855 LRR_8: Leucine rich r 98.7 1.1E-08 2.3E-13 69.3 2.6 57 153-209 2-60 (61)
41 PF13855 LRR_8: Leucine rich r 98.7 2E-08 4.2E-13 68.0 3.6 59 129-187 1-61 (61)
42 PLN03150 hypothetical protein; 98.6 8.1E-08 1.8E-12 96.7 7.2 85 131-215 420-507 (623)
43 COG5238 RNA1 Ran GTPase-activa 98.6 6E-09 1.3E-13 88.9 -1.2 246 127-411 28-318 (388)
44 KOG0531 Protein phosphatase 1, 98.5 1E-08 2.2E-13 98.6 -0.8 84 126-211 92-175 (414)
45 KOG4341 F-box protein containi 98.5 6.5E-09 1.4E-13 93.9 -2.6 295 129-425 138-458 (483)
46 KOG2982 Uncharacterized conser 98.5 4.4E-08 9.6E-13 84.8 0.8 223 153-402 46-285 (418)
47 PLN03150 hypothetical protein; 98.4 8.4E-07 1.8E-11 89.4 7.4 107 324-431 419-527 (623)
48 PF12799 LRR_4: Leucine Rich r 98.4 3.7E-07 8E-12 56.5 2.9 37 153-189 2-38 (44)
49 KOG1859 Leucine-rich repeat pr 98.3 3.6E-08 7.7E-13 95.2 -4.2 126 154-285 166-291 (1096)
50 KOG0531 Protein phosphatase 1, 98.3 1.4E-07 3.1E-12 90.7 -0.3 127 128-260 71-198 (414)
51 PF12799 LRR_4: Leucine Rich r 98.2 1.1E-06 2.5E-11 54.3 2.6 41 396-436 1-41 (44)
52 KOG3665 ZYG-1-like serine/thre 98.1 9.1E-07 2E-11 89.1 2.2 164 115-280 108-282 (699)
53 KOG2982 Uncharacterized conser 98.1 1.1E-06 2.3E-11 76.4 2.0 84 127-210 69-158 (418)
54 PRK15386 type III secretion pr 98.1 1.8E-05 3.8E-10 73.7 9.9 139 244-406 48-187 (426)
55 KOG1859 Leucine-rich repeat pr 98.0 3.4E-07 7.3E-12 88.6 -3.4 104 128-235 186-290 (1096)
56 KOG4579 Leucine-rich repeat (L 97.9 3E-06 6.6E-11 65.1 1.3 85 126-210 50-135 (177)
57 COG5238 RNA1 Ran GTPase-activa 97.9 1.3E-06 2.7E-11 75.0 -1.2 240 94-361 29-317 (388)
58 PRK15386 type III secretion pr 97.9 3.8E-05 8.1E-10 71.6 8.1 73 126-209 49-123 (426)
59 KOG4579 Leucine-rich repeat (L 97.8 2E-06 4.3E-11 66.1 -1.3 102 128-232 26-131 (177)
60 KOG3665 ZYG-1-like serine/thre 97.8 2.6E-05 5.6E-10 78.8 5.0 112 91-212 144-264 (699)
61 KOG1644 U2-associated snRNP A' 97.5 0.00012 2.6E-09 60.4 4.4 102 153-256 43-148 (233)
62 KOG1947 Leucine rich repeat pr 97.5 7.6E-06 1.6E-10 80.8 -3.3 39 247-285 268-307 (482)
63 KOG2123 Uncharacterized conser 97.1 1.5E-05 3.2E-10 68.8 -5.0 103 127-231 17-124 (388)
64 KOG2739 Leucine-rich acidic nu 97.1 0.00021 4.5E-09 61.5 1.7 86 148-235 39-127 (260)
65 KOG1644 U2-associated snRNP A' 97.0 0.0013 2.9E-08 54.4 5.5 83 323-405 64-149 (233)
66 KOG2123 Uncharacterized conser 97.0 7.8E-05 1.7E-09 64.5 -2.4 104 150-256 17-125 (388)
67 PF00560 LRR_1: Leucine Rich R 96.6 0.0011 2.5E-08 33.9 1.2 18 177-194 2-19 (22)
68 KOG1947 Leucine rich repeat pr 96.6 0.00033 7.2E-09 69.1 -1.6 237 150-411 186-442 (482)
69 KOG2739 Leucine-rich acidic nu 96.4 0.0018 3.9E-08 55.9 1.9 104 323-430 43-154 (260)
70 PF00560 LRR_1: Leucine Rich R 96.4 0.0012 2.5E-08 33.9 0.4 21 153-173 1-21 (22)
71 PF13504 LRR_7: Leucine rich r 96.3 0.0025 5.4E-08 30.3 1.4 17 419-435 1-17 (17)
72 KOG0473 Leucine-rich repeat pr 96.1 0.0004 8.6E-09 58.7 -3.6 86 126-211 39-124 (326)
73 smart00369 LRR_TYP Leucine-ric 95.6 0.0066 1.4E-07 32.5 1.3 23 418-440 1-23 (26)
74 smart00370 LRR Leucine-rich re 95.6 0.0066 1.4E-07 32.5 1.3 23 418-440 1-23 (26)
75 PF13504 LRR_7: Leucine rich r 95.6 0.0086 1.9E-07 28.4 1.5 16 176-191 2-17 (17)
76 KOG3864 Uncharacterized conser 95.5 0.0011 2.3E-08 55.0 -3.0 85 324-408 102-188 (221)
77 PF13306 LRR_5: Leucine rich r 95.0 0.059 1.3E-06 42.3 5.5 79 126-207 9-90 (129)
78 PF13306 LRR_5: Leucine rich r 95.0 0.098 2.1E-06 41.0 6.8 109 323-439 12-122 (129)
79 smart00369 LRR_TYP Leucine-ric 93.6 0.062 1.4E-06 28.6 2.0 20 175-194 2-21 (26)
80 smart00370 LRR Leucine-rich re 93.6 0.062 1.4E-06 28.6 2.0 20 175-194 2-21 (26)
81 KOG3864 Uncharacterized conser 93.2 0.0069 1.5E-07 50.3 -3.2 37 347-383 151-187 (221)
82 smart00364 LRR_BAC Leucine-ric 90.9 0.14 2.9E-06 27.2 1.1 19 419-437 2-20 (26)
83 KOG0473 Leucine-rich repeat pr 88.5 0.032 6.9E-07 47.6 -3.7 63 126-188 62-124 (326)
84 KOG4308 LRR-containing protein 88.4 0.0073 1.6E-07 58.7 -8.7 14 397-410 433-446 (478)
85 smart00365 LRR_SD22 Leucine-ri 84.7 0.73 1.6E-05 24.5 1.6 19 418-436 1-19 (26)
86 PF13516 LRR_6: Leucine Rich r 83.6 0.6 1.3E-05 24.2 1.0 15 418-432 1-15 (24)
87 KOG4308 LRR-containing protein 78.8 0.079 1.7E-06 51.6 -6.2 41 393-434 401-447 (478)
88 PF14162 YozD: YozD-like prote 75.4 2.7 5.8E-05 26.1 2.0 20 3-22 10-29 (57)
89 smart00367 LRR_CC Leucine-rich 74.5 2.1 4.5E-05 22.6 1.3 16 395-410 1-16 (26)
90 smart00368 LRR_RI Leucine rich 63.3 5.2 0.00011 21.6 1.4 14 419-432 2-15 (28)
91 PF05725 FNIP: FNIP Repeat; I 60.3 17 0.00037 22.1 3.5 30 302-331 13-42 (44)
92 KOG3763 mRNA export factor TAP 59.6 2.7 5.9E-05 40.9 -0.3 79 323-402 218-307 (585)
93 KOG3763 mRNA export factor TAP 51.3 7 0.00015 38.2 1.0 79 300-378 217-307 (585)
94 COG3432 Predicted transcriptio 46.3 43 0.00093 24.5 4.1 32 5-39 46-77 (95)
95 PF13463 HTH_27: Winged helix 45.3 53 0.0012 21.8 4.5 29 7-35 35-63 (68)
96 PF05597 Phasin: Poly(hydroxya 20.8 71 0.0015 25.1 1.8 18 3-20 33-50 (132)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=5.2e-31 Score=280.46 Aligned_cols=386 Identities=18% Similarity=0.174 Sum_probs=254.5
Q ss_pred HHHHHHHcCeEEEEEecCCCceeEEEcChhhhhhhccccccCC-------eEEEecCCCCcccCCCCCCceeEEEEecCC
Q 013456 10 DFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGG-------VFCIHDGSRSNATSSSSDLCVCRLAEHLDN 82 (442)
Q Consensus 10 ~~~~Lv~r~li~~~~~~~~~~~~~~~mhdlv~d~~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (442)
.++.|+++|||+... + .++|||++||||+++++++. +.....+.........++.+++++++....
T Consensus 471 ~l~~L~~ksLi~~~~----~---~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~ 543 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE----D---IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDE 543 (1153)
T ss_pred ChHHHHhcCCEEEcC----C---eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCc
Confidence 488999999998642 2 47999999999999987763 332222222222233467789999887655
Q ss_pred CC--CCCCCCccccccceeEEEEeecCC-------CCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccc
Q 013456 83 LS--SITPSDKKQFEYLHSYLFFVKRKG-------GKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQL 153 (442)
Q Consensus 83 ~~--~~~~~~~~~~~~lr~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~ 153 (442)
.. ......+..+.+|+.|.+..+... ..|.+ +..+ .+.||.|.+.++.+..+|..+ .+.+
T Consensus 544 ~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~l---------p~~Lr~L~~~~~~l~~lP~~f-~~~~ 612 (1153)
T PLN03210 544 IDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYL---------PPKLRLLRWDKYPLRCMPSNF-RPEN 612 (1153)
T ss_pred cceeeecHHHHhcCccccEEEEecccccccccceeecCcc-hhhc---------CcccEEEEecCCCCCCCCCcC-CccC
Confidence 43 234566788999999988765311 12221 1111 246899999988888888877 5688
Q ss_pred cceecccccccccCCccccccCCCcEEeecCcc-ccccchhhhcccccceeeeccccccccccCCCCCCCCccccccccc
Q 013456 154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTN-ITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGL 232 (442)
Q Consensus 154 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~ 232 (442)
|++|++.++.+..+|..+..+++|++|+|++|. +..+|. +..+++|+.|++++|.....+|. .++++++|+.|++.
T Consensus 613 L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~--si~~L~~L~~L~L~ 689 (1153)
T PLN03210 613 LVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS--SIQYLNKLEDLDMS 689 (1153)
T ss_pred CcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch--hhhccCCCCEEeCC
Confidence 999999998888888888888999999998874 567764 77888999999988876666654 48888889999888
Q ss_pred ccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecccc
Q 013456 233 SIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRL 312 (442)
Q Consensus 233 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 312 (442)
+|.....+|..+ .+++|+.|++++|... ..+|. ...+|+.|++++|.+...|... .+++|++|.+.+..
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L-~~~p~---~~~nL~~L~L~~n~i~~lP~~~------~l~~L~~L~l~~~~ 758 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRL-KSFPD---ISTNISWLDLDETAIEEFPSNL------RLENLDELILCEMK 758 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCc-ccccc---ccCCcCeeecCCCccccccccc------cccccccccccccc
Confidence 887766666654 6788888888877432 44443 2357888888887765555432 34556666554421
Q ss_pred ---------CCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccC
Q 013456 313 ---------PGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLK 383 (442)
Q Consensus 313 ---------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 383 (442)
+.+......+++|+.|++++|.....+|..++++++|+.|++++|...+..+.. ..+++|+.|++++|.
T Consensus 759 ~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--INLESLESLDLSGCS 836 (1153)
T ss_pred hhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC--CCccccCEEECCCCC
Confidence 001112223467777777777665566777777777888887777554443332 256777777777766
Q ss_pred CcceEE--------------------eCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccc
Q 013456 384 ELKEWT--------------------IEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKK 429 (442)
Q Consensus 384 ~l~~~~--------------------~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n 429 (442)
.+..++ ...+.+++|+.|++.+|..++. |..+..+++|+.+++++|
T Consensus 837 ~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 837 RLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 554433 2233445555555555554443 444455555555555555
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=9.5e-31 Score=278.03 Aligned_cols=298 Identities=25% Similarity=0.249 Sum_probs=172.4
Q ss_pred cCceeEEEecCCCCCC-CChhhhhcccccceecccccccc-cCCccccccCCCcEEeecCcccc-ccchhhhccccccee
Q 013456 127 GYRLLRVLDLEDVYKP-VLPETIGKLQLLRYVGLRRTFID-SIPKSLGDLHSLETLDMKHTNIT-SLPKSIWKVKTLRHL 203 (442)
Q Consensus 127 ~~~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L 203 (442)
.+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 3555666666655443 45666666777777777666653 45666666777777777766665 566666667777777
Q ss_pred eeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecc
Q 013456 204 YLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSI 283 (442)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 283 (442)
++++|.+.+..|. .++++++|++|++.++...+..+..++.+++|+.|+++.|... +.+|..+..+++|+.|++++|
T Consensus 218 ~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 218 YLGYNNLSGEIPY--EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS-GPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred ECcCCccCCcCCh--hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee-ccCchhHhhccCcCEEECcCC
Confidence 7766666554443 3666667777766666655556666666666777766666544 445556666666666666666
Q ss_pred ccccCCccccccccCCcCCCceEEeccccC---CCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCccccc
Q 013456 284 NDFYVPSDLAIGSLNNHKELKELYLLGRLP---GPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYI 360 (442)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 360 (442)
........ .+..+++|+.|++.++.. .+..+..+ ++|+.|++++|.+++..+..++.+++|+.|++++|.+.
T Consensus 295 ~l~~~~p~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 295 SLSGEIPE----LVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred eeccCCCh----hHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 54332111 234456666666655521 12233344 56666666666666555656666666666666666554
Q ss_pred Cccccc-----------------------CCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCC
Q 013456 361 GEKMTC-----------------------GNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELT 416 (442)
Q Consensus 361 ~~~~~~-----------------------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~ 416 (442)
+..+.. .+..+++|+.|++++|.....++.....+++|+.|++++|..... |..+.
T Consensus 370 ~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 449 (968)
T PLN00113 370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW 449 (968)
T ss_pred eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc
Confidence 332221 133344555555555443333333444555666666666655544 44455
Q ss_pred CCCCCcEEEecccccc
Q 013456 417 KLSNLKELTLVKKVLK 432 (442)
Q Consensus 417 ~l~~L~~L~l~~n~l~ 432 (442)
.+++|+.|++++|++.
T Consensus 450 ~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 450 DMPSLQMLSLARNKFF 465 (968)
T ss_pred cCCCCcEEECcCceee
Confidence 5666666666666654
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.97 E-value=9.2e-31 Score=265.10 Aligned_cols=364 Identities=25% Similarity=0.254 Sum_probs=237.7
Q ss_pred CChHHHHHHHHHHHHHcCeEEEEEecCCCceeEEEcChhhhhhhccccc-----cCCeEEEecCCCCcccCCCCCCceeE
Q 013456 1 MAPEDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAE-----SGGVFCIHDGSRSNATSSSSDLCVCR 75 (442)
Q Consensus 1 ~~~ed~~~~~~~~Lv~r~li~~~~~~~~~~~~~~~mhdlv~d~~~~i~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (442)
+++||+|+.|+++||+++|++..+.. ++...|+|||+|||||.++|+ +++.+...+.+............+||
T Consensus 450 ~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr 527 (889)
T KOG4658|consen 450 ETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRR 527 (889)
T ss_pred cchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeE
Confidence 46799999999999999999987643 677899999999999999999 66644443322222334456778999
Q ss_pred EEEecCCCCCCCCCCccccccceeEEEEeecC--CCCCCchhhhHHHHHHhhhcCceeEEEecCCC-CCCCChhhhhccc
Q 013456 76 LAEHLDNLSSITPSDKKQFEYLHSYLFFVKRK--GGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDV-YKPVLPETIGKLQ 152 (442)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~l~~~l~~l~ 152 (442)
+++..+....... ....++++||++..+.. ..++.+ .|..+|.||||||++| ....+|.+++++.
T Consensus 528 ~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~~is~~----------ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 528 MSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLLEISGE----------FFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred EEEeccchhhccC--CCCCCccceEEEeecchhhhhcCHH----------HHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 9988877643332 23455899999998853 333322 2466999999999976 6789999999999
Q ss_pred ccceecccccccccCCccccccCCCcEEeecCccc-cccchhhhcccccceeeeccccccccccCCCCCCCCcccccccc
Q 013456 153 LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNI-TSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWG 231 (442)
Q Consensus 153 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~ 231 (442)
|||||+++++.+..+|.++++|+.|++|++..+.- ..+|.....|.+|++|.+.........- .++.+.+|+.|..
T Consensus 596 ~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~---~l~el~~Le~L~~ 672 (889)
T KOG4658|consen 596 HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKL---LLKELENLEHLEN 672 (889)
T ss_pred hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchh---hHHhhhcccchhh
Confidence 99999999999999999999999999999999854 4556666679999999997754211111 2344444444443
Q ss_pred cccCCCC-CchhhhccccCcceeeEEee--ccccchhHHhhcCCcccccceeeccccccCCcccc-ccccC-CcCCCceE
Q 013456 232 LSIGKKS-PPLNWLENLSDLKNLGLICN--IASLGKITNLIQGLTSLESLRLRSINDFYVPSDLA-IGSLN-NHKELKEL 306 (442)
Q Consensus 232 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~-~~~~L~~l 306 (442)
....... .....+..+..|..+...-. .......+..+..+.+|+.|.+.++.......... ..... .++++..+
T Consensus 673 ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 673 LSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV 752 (889)
T ss_pred heeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence 3332221 12233444444443222111 01224456667788899999998887654322110 00011 13344444
Q ss_pred Eecccc-CCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecc
Q 013456 307 YLLGRL-PGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWV 381 (442)
Q Consensus 307 ~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 381 (442)
.+..+. +.......++++|+.|.+..|..-.++.+....+..+..+.+..+.+.+.......++|+++..+.+..
T Consensus 753 ~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~ 828 (889)
T KOG4658|consen 753 SILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF 828 (889)
T ss_pred HhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCc
Confidence 443332 222333456789999999988877777777777777776555555554432233345555555555443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.4e-29 Score=269.04 Aligned_cols=307 Identities=24% Similarity=0.228 Sum_probs=224.8
Q ss_pred hhcCceeEEEecCCCCC-CCChhhhhcccccceecccccccc-cCCccccccCCCcEEeecCcccc-ccchhhhcccccc
Q 013456 125 IRGYRLLRVLDLEDVYK-PVLPETIGKLQLLRYVGLRRTFID-SIPKSLGDLHSLETLDMKHTNIT-SLPKSIWKVKTLR 201 (442)
Q Consensus 125 ~~~~~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~ 201 (442)
+..+++|++|++++|.+ ..+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 45688899999998765 467888888999999999888765 56888888889999999888887 7888888888888
Q ss_pred eeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceee
Q 013456 202 HLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLR 281 (442)
Q Consensus 202 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 281 (442)
+|++++|.+.+..|. .++++++|+.|++..+...+..+..+..+++|+.|++++|... ..+|..+..+++|+.|+++
T Consensus 240 ~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 240 HLDLVYNNLTGPIPS--SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS-GEIPELVIQLQNLEILHLF 316 (968)
T ss_pred EEECcCceeccccCh--hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec-cCCChhHcCCCCCcEEECC
Confidence 888888887765554 4788888888888877776667777777888888888777654 4566666777777777777
Q ss_pred ccccccCCccc--------------------cccccCCcCCCceEEeccccC---CCcccccCCCceeEEEEeccCCCCC
Q 013456 282 SINDFYVPSDL--------------------AIGSLNNHKELKELYLLGRLP---GPLKLHELPPNLRIFTLSLSYLSED 338 (442)
Q Consensus 282 ~~~~~~~~~~~--------------------~~~~~~~~~~L~~l~l~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~ 338 (442)
+|......... ....+..+++|+.++++++.. .+.++... ++|+.|+++.|.+.+.
T Consensus 317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~ 395 (968)
T PLN00113 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGE 395 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEeccc
Confidence 66554321110 001122344445555544321 12222233 5666777777776667
Q ss_pred CcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCC
Q 013456 339 PMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTK 417 (442)
Q Consensus 339 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~ 417 (442)
.+..++.+++|+.|++++|.+.+..+.. +..+++|+.|++++|.....++.....+++|+.|++++|..... |.. ..
T Consensus 396 ~p~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~ 473 (968)
T PLN00113 396 IPKSLGACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FG 473 (968)
T ss_pred CCHHHhCCCCCCEEECcCCEeeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc-cc
Confidence 7777888999999999999887655543 78899999999999876666666666899999999999998876 554 45
Q ss_pred CCCCcEEEeccccccccCCC
Q 013456 418 LSNLKELTLVKKVLKMKPED 437 (442)
Q Consensus 418 l~~L~~L~l~~n~l~~~p~~ 437 (442)
.++|+.|++++|++....+.
T Consensus 474 ~~~L~~L~ls~n~l~~~~~~ 493 (968)
T PLN00113 474 SKRLENLDLSRNQFSGAVPR 493 (968)
T ss_pred cccceEEECcCCccCCccCh
Confidence 68999999999999755443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=5.2e-29 Score=231.05 Aligned_cols=302 Identities=22% Similarity=0.240 Sum_probs=235.7
Q ss_pred hhcCceeEEEecCCCCC--CCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhh-cccccc
Q 013456 125 IRGYRLLRVLDLEDVYK--PVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIW-KVKTLR 201 (442)
Q Consensus 125 ~~~~~~L~~L~l~~~~~--~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~-~l~~L~ 201 (442)
++.++.||.+++..|.+ ..+|..+..+..|..|+|++|++.+.|..+..-+++-+|+|++|+|..+|..+. +|..|-
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 45677777777775543 446777777777888888888777777777777777888888887777776543 677777
Q ss_pred eeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceee
Q 013456 202 HLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLR 281 (442)
Q Consensus 202 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 281 (442)
.||+++|.+.. .|. .+..+.+|++|.+.++.....-...+..+++|+.|.++++.-+...+|.++..+.+|..++++
T Consensus 154 fLDLS~NrLe~-LPP--Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 154 FLDLSNNRLEM-LPP--QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred hhccccchhhh-cCH--HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 78888777653 332 477777788887777776666566667777777777777766667777777788888888888
Q ss_pred ccccccCCccccccccCCcCCCceEEeccccCC--CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccc
Q 013456 282 SINDFYVPSDLAIGSLNNHKELKELYLLGRLPG--PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSY 359 (442)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 359 (442)
.|+....|.. +-.+++|+.|+++|+... ......+ .+|++|+++.|.++ .+|..+++++.|+.|.+.+|.+
T Consensus 231 ~N~Lp~vPec-----ly~l~~LrrLNLS~N~iteL~~~~~~W-~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 231 ENNLPIVPEC-----LYKLRNLRRLNLSGNKITELNMTEGEW-ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred ccCCCcchHH-----HhhhhhhheeccCcCceeeeeccHHHH-hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcc
Confidence 8777666554 446777888888877422 2223444 78999999999998 7899999999999999999998
Q ss_pred cCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCCC
Q 013456 360 IGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPED 437 (442)
Q Consensus 360 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~~ 437 (442)
.-+..+++++.+.+|+.+...+ +.++-.|.....|+.|+.|.+..|...++|+++.-++.|+.|++..|+--..|+-
T Consensus 304 ~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 304 TFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 8777888899999999999987 4777888888899999999999999999999999999999999999977677664
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=3.2e-27 Score=217.45 Aligned_cols=333 Identities=18% Similarity=0.142 Sum_probs=198.4
Q ss_pred ccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccC-Cccccc
Q 013456 95 EYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSI-PKSLGD 173 (442)
Q Consensus 95 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l-p~~~~~ 173 (442)
+.-++|.++++....+.... |.++++|+.+++.+|.++.+|.......||+.|+|.+|.|.++ .+++..
T Consensus 78 ~~t~~LdlsnNkl~~id~~~----------f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~ 147 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEF----------FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSA 147 (873)
T ss_pred cceeeeeccccccccCcHHH----------HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHh
Confidence 45556767666554443221 2346677777777776666666555566666666666666655 334566
Q ss_pred cCCCcEEeecCccccccchh-hhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcce
Q 013456 174 LHSLETLDMKHTNITSLPKS-IWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKN 252 (442)
Q Consensus 174 l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~ 252 (442)
++.|+.|||+.|.|+++|.. +-.=.++++|++++|.+.....- .+..+.+|.+|.+..++.....+..|..+++|+.
T Consensus 148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~--~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETG--HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES 225 (873)
T ss_pred HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccc--cccccchheeeecccCcccccCHHHhhhcchhhh
Confidence 66666666666666655443 22235566666666665533222 3555556666666665555555555556666666
Q ss_pred eeEEeeccccchhHHhhcCCcccccceeeccccccCCcccc--------------------ccccCCcCCCceEEecccc
Q 013456 253 LGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLA--------------------IGSLNNHKELKELYLLGRL 312 (442)
Q Consensus 253 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--------------------~~~~~~~~~L~~l~l~~~~ 312 (442)
|++..|.+... .--.|.++++|+.|.+..|.+....+..- -..+-.++.|+.|+++.+.
T Consensus 226 LdLnrN~iriv-e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 226 LDLNRNRIRIV-EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred hhccccceeee-hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence 66666544311 12234445555555555544443322210 0123344555555555443
Q ss_pred CCCccc--ccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEE-
Q 013456 313 PGPLKL--HELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWT- 389 (442)
Q Consensus 313 ~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~- 389 (442)
.....+ -.++++|+.|+|++|+++.-.+..|..+..|++|+|+.|.+.. .....+.++.+|+.|+|+.|...-.+.
T Consensus 305 I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 305 IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 211111 1234677777777777776666667777777777777776642 233346678888888888764322222
Q ss_pred --eCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCCCCCCC
Q 013456 390 --IEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPEDAWPR 441 (442)
Q Consensus 390 --~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~~~~~ 441 (442)
..+.++|+|++|.+.+|++-.+ -..+..+++|++|+|.+|.|.+|-+++|+|
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence 2234689999999999988777 556788999999999999999998888875
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.5e-27 Score=219.68 Aligned_cols=304 Identities=21% Similarity=0.164 Sum_probs=221.3
Q ss_pred ceeEEEecCCCCCCCC-hhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccc-hhhhcccccceeeec
Q 013456 129 RLLRVLDLEDVYKPVL-PETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLP-KSIWKVKTLRHLYLN 206 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~ 206 (442)
..-+.|++++|.+..+ +..|.++++|+.+++..|.++.+|...+...+|+.|+|.+|.|+++. ..+..++.|+.||++
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 5578899999987766 55789999999999999999999987778888999999999999664 468889999999999
Q ss_pred cccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456 207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF 286 (442)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 286 (442)
.|.+. .++.+ .+..-.++++|++..++........|.++.+|..|.++.|.++ .-.+..|.++++|+.|++..|.+.
T Consensus 158 rN~is-~i~~~-sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 158 RNLIS-EIPKP-SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hchhh-cccCC-CCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccccee
Confidence 99887 45554 5667788999999999988877788999999999999999776 555677888999999999988764
Q ss_pred cCCccccccccCCcCCCceEEeccccCC--CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccc
Q 013456 287 YVPSDLAIGSLNNHKELKELYLLGRLPG--PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKM 364 (442)
Q Consensus 287 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 364 (442)
-. .+..|..+++|+.+.+..+... .......+.++++|+|+.|++...-..++-++..|+.|+++.|.+.....
T Consensus 235 iv----e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 235 IV----EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred ee----hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 32 1334666777777777544211 11111113566666666666655445555666666666666665543222
Q ss_pred ccCCCCCCcccEEEecccCC-----------------------cceE-EeCCCccccccEEEeccCCCCCC----CccCC
Q 013456 365 TCGNGGFPQLRVLKLWVLKE-----------------------LKEW-TIEEGAMTALEKLEIRNCPKLKM----PTELT 416 (442)
Q Consensus 365 ~~~~~~~~~L~~L~l~~~~~-----------------------l~~~-~~~~~~~~~L~~L~l~~c~~l~~----p~~l~ 416 (442)
. .+.-.++|++|+|++|.. +..+ ...+..+.+|++|++++|.+... ...+.
T Consensus 311 d-~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 311 D-SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred c-hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 2 245555666666665421 1111 12334578999999998876542 44566
Q ss_pred CCCCCcEEEeccccccccCCCCCC
Q 013456 417 KLSNLKELTLVKKVLKMKPEDAWP 440 (442)
Q Consensus 417 ~l~~L~~L~l~~n~l~~~p~~~~~ 440 (442)
.+++|+.|.+.||+|+.||.-+|.
T Consensus 390 gl~~LrkL~l~gNqlk~I~krAfs 413 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQLKSIPKRAFS 413 (873)
T ss_pred cchhhhheeecCceeeecchhhhc
Confidence 799999999999999999987664
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.7e-26 Score=214.39 Aligned_cols=298 Identities=24% Similarity=0.247 Sum_probs=203.1
Q ss_pred hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCcccc--ccchhhhccccccee
Q 013456 126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNIT--SLPKSIWKVKTLRHL 203 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L 203 (442)
..|++++.|.|....+..+|+.++.|.+|++|++++|++..+-..+..|+.|+.++++.|+++ .+|..|.++..|..|
T Consensus 29 ~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~l 108 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTIL 108 (1255)
T ss_pred HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceee
Confidence 447778888888888888888888888888888888877777666777888888888888776 678888888888888
Q ss_pred eeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecc
Q 013456 204 YLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSI 283 (442)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 283 (442)
|+++|++. ..|. .+..-+++-.|++.++........-+.++..|-.|++++|.. +.+|+.+..+.+|+.|.+++|
T Consensus 109 DLShNqL~-EvP~--~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL--e~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 109 DLSHNQLR-EVPT--NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL--EMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred ecchhhhh-hcch--hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh--hhcCHHHHHHhhhhhhhcCCC
Confidence 88888765 3333 467777777777777776655555566777777888887743 677777788888888888877
Q ss_pred ccccCCccccccccCCcCCCceEEecccc----CCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccc
Q 013456 284 NDFYVPSDLAIGSLNNHKELKELYLLGRL----PGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSY 359 (442)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 359 (442)
...- +.+..+..+..|+.|+++++. ..|..+..+ .+|..++++.|.++ ..|..+-.+++|+.|+|++|.+
T Consensus 184 PL~h----fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 184 PLNH----FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred hhhH----HHHhcCccchhhhhhhcccccchhhcCCCchhhh-hhhhhccccccCCC-cchHHHhhhhhhheeccCcCce
Confidence 5432 122334556677777777653 124445555 67788888888776 5677777888888888888877
Q ss_pred cCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCC--CCccCCCCCCCcEEEeccccccccCCC
Q 013456 360 IGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLK--MPTELTKLSNLKELTLVKKVLKMKPED 437 (442)
Q Consensus 360 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~--~p~~l~~l~~L~~L~l~~n~l~~~p~~ 437 (442)
+... ...+...+|++|+++.| .+..+|.....+++|+.|.+.+|...- +|.+++.+.+|+.+..++|.++.+|++
T Consensus 258 teL~--~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEg 334 (1255)
T KOG0444|consen 258 TELN--MTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEG 334 (1255)
T ss_pred eeee--ccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchh
Confidence 6422 22445667777777763 455566555556666666665554331 255555555555555555555555543
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1.5e-21 Score=208.34 Aligned_cols=296 Identities=20% Similarity=0.150 Sum_probs=219.6
Q ss_pred hhhcCceeEEEecCCCCC-------CCChhhhhccc-ccceecccccccccCCccccccCCCcEEeecCccccccchhhh
Q 013456 124 AIRGYRLLRVLDLEDVYK-------PVLPETIGKLQ-LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIW 195 (442)
Q Consensus 124 ~~~~~~~L~~L~l~~~~~-------~~l~~~l~~l~-~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~ 195 (442)
+|.+|++|+.|.+.++.. ..+|..+..++ +||+|.+.++.+..+|..+ ...+|+.|++.+|.+..+|.++.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccc
Confidence 346799999999975432 24677776664 6999999999999999887 57999999999999999999999
Q ss_pred cccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCccc
Q 013456 196 KVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSL 275 (442)
Q Consensus 196 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 275 (442)
.+++|+.|+++++.....+| .++.+++|+.|++.+|.....++..++.+++|+.|++++|... ..+|..+ ++++|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip---~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L-~~Lp~~i-~l~sL 706 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIP---DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL-EILPTGI-NLKSL 706 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCC---ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc-CccCCcC-CCCCC
Confidence 99999999999987665665 3788999999999999888888999999999999999987543 5666654 68899
Q ss_pred ccceeeccccccCCccccccccCCcCCCceEEeccccCC--CcccccCCCceeEEEEeccCCCC-------CCcccccCC
Q 013456 276 ESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPG--PLKLHELPPNLRIFTLSLSYLSE-------DPMPVLGQL 346 (442)
Q Consensus 276 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~l~~l 346 (442)
+.|++++|......+. ...+|+.|++.++... +.. ..+ ++|+.|.+..+.... ..+......
T Consensus 707 ~~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~i~~lP~~-~~l-~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPD-------ISTNISWLDLDETAIEEFPSN-LRL-ENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CEEeCCCCCCcccccc-------ccCCcCeeecCCCcccccccc-ccc-cccccccccccchhhccccccccchhhhhcc
Confidence 9999999865432221 2467899999877421 111 123 678888887643211 111123345
Q ss_pred CCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC---------------
Q 013456 347 RELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM--------------- 411 (442)
Q Consensus 347 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~--------------- 411 (442)
++|+.|++++|......+.. ++.+++|+.|++++|..++.+|... .+++|+.|++++|..++.
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~ 855 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSR 855 (1153)
T ss_pred ccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCC
Confidence 79999999999876665554 8899999999999999888887554 577888888888766543
Q ss_pred ------CccCCCCCCCcEEEeccc-cccccCC
Q 013456 412 ------PTELTKLSNLKELTLVKK-VLKMKPE 436 (442)
Q Consensus 412 ------p~~l~~l~~L~~L~l~~n-~l~~~p~ 436 (442)
|..+..+++|+.|++++| ++..+|.
T Consensus 856 n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 856 TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CCCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 334445555555555553 4455544
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=1.7e-24 Score=191.16 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=72.9
Q ss_pred CcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEE-----------------------eC-CCc
Q 013456 339 PMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWT-----------------------IE-EGA 394 (442)
Q Consensus 339 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-----------------------~~-~~~ 394 (442)
++..++.+++|..|++++|-+-+ .|.. ++.+..|+.|+++.+ .+..+| .. .+.
T Consensus 427 v~~~l~~l~kLt~L~L~NN~Ln~-LP~e-~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNLLND-LPEE-MGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred chHHHHhhhcceeeecccchhhh-cchh-hhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 34456778889999998876643 3333 677777889988875 333222 22 357
Q ss_pred cccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCCC
Q 013456 395 MTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPED 437 (442)
Q Consensus 395 ~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~~ 437 (442)
|.+|..|++.+|....+|+++++|++|++|+++||++. .|.+
T Consensus 504 m~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~ 545 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPRH 545 (565)
T ss_pred hhhcceeccCCCchhhCChhhccccceeEEEecCCccC-CCHH
Confidence 88999999999999999999999999999999999998 6653
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=4.8e-23 Score=182.13 Aligned_cols=323 Identities=24% Similarity=0.229 Sum_probs=219.8
Q ss_pred cccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccc
Q 013456 92 KQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSL 171 (442)
Q Consensus 92 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~ 171 (442)
..+..+.++.+..+.....|.+ ..++..++.++.+++.+..+|+.++.+..|+.|+.++|.+..+|+++
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~a-----------ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i 133 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAA-----------IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSI 133 (565)
T ss_pred hcccceeEEEeccchhhhCCHH-----------HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchH
Confidence 3455555555555555455432 23456677777777777777777777777777777777777777777
Q ss_pred cccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcc
Q 013456 172 GDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLK 251 (442)
Q Consensus 172 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~ 251 (442)
+.+..|+.++..+|++..+|.+++.+.+|..+++.+|.+....| ..-+++.|++++...+. .+.+|+.++.+.+|.
T Consensus 134 ~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~---~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~ 209 (565)
T KOG0472|consen 134 GRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPE---NHIAMKRLKHLDCNSNL-LETLPPELGGLESLE 209 (565)
T ss_pred HHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCH---HHHHHHHHHhcccchhh-hhcCChhhcchhhhH
Confidence 77777777777777777778777777778778777777653322 23347777777755443 345677788888888
Q ss_pred eeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecccc--CCCcccccCCCceeEEE
Q 013456 252 NLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRL--PGPLKLHELPPNLRIFT 329 (442)
Q Consensus 252 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L~~L~ 329 (442)
.|++..|.+ ..+| .|.+++.|..+.++.|.+...+.+. ...++.+..|++..+. ..|..+..+ .+|+.||
T Consensus 210 ~LyL~~Nki--~~lP-ef~gcs~L~Elh~g~N~i~~lpae~----~~~L~~l~vLDLRdNklke~Pde~clL-rsL~rLD 281 (565)
T KOG0472|consen 210 LLYLRRNKI--RFLP-EFPGCSLLKELHVGENQIEMLPAEH----LKHLNSLLVLDLRDNKLKEVPDEICLL-RSLERLD 281 (565)
T ss_pred HHHhhhccc--ccCC-CCCccHHHHHHHhcccHHHhhHHHH----hcccccceeeeccccccccCchHHHHh-hhhhhhc
Confidence 888877754 3444 5777788888887777665555442 4467788888887763 224555555 7899999
Q ss_pred EeccCCCCCCcccccCCCCCcEEEeCcccccCc-----------------------ccccC-----------------CC
Q 013456 330 LSLSYLSEDPMPVLGQLRELKALRLFAHSYIGE-----------------------KMTCG-----------------NG 369 (442)
Q Consensus 330 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----------------------~~~~~-----------------~~ 369 (442)
+++|.++ ..|..++++ +|+.|.+.||.+... .+... ..
T Consensus 282 lSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~ 359 (565)
T KOG0472|consen 282 LSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIY 359 (565)
T ss_pred ccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchh
Confidence 9999988 567889999 999999998853210 00000 00
Q ss_pred CCCcccEEEecccCCcceEE--------------------------------------------------eCCCcccccc
Q 013456 370 GFPQLRVLKLWVLKELKEWT--------------------------------------------------IEEGAMTALE 399 (442)
Q Consensus 370 ~~~~L~~L~l~~~~~l~~~~--------------------------------------------------~~~~~~~~L~ 399 (442)
...+.+.|++++ ..++.+| .....+++|.
T Consensus 360 ~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt 438 (565)
T KOG0472|consen 360 AIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLT 438 (565)
T ss_pred hhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcce
Confidence 123455555554 1222111 0113467899
Q ss_pred EEEeccCCCCCCCccCCCCCCCcEEEeccccccccCCCCCC
Q 013456 400 KLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPEDAWP 440 (442)
Q Consensus 400 ~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~~~~~ 440 (442)
.|++++|..-++|..++.+..|++|+|+.|++..+|.-.+.
T Consensus 439 ~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~ 479 (565)
T KOG0472|consen 439 FLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYE 479 (565)
T ss_pred eeecccchhhhcchhhhhhhhhheecccccccccchHHHhh
Confidence 99999998878899999999999999999999999975543
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=2.8e-21 Score=187.49 Aligned_cols=106 Identities=25% Similarity=0.245 Sum_probs=69.1
Q ss_pred CceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEE
Q 013456 323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLE 402 (442)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 402 (442)
+.|+.|.+.+|.+++...+.+-.+++|+.|+|++|.+.. .+...+.+++.|++|.|+|| .++.++.....+++|++|.
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHh
Confidence 457777888888887777788888888888888887753 44444777888888888885 5555555444555555555
Q ss_pred eccCCCCCCCccCCCCCCCcEEEeccccc
Q 013456 403 IRNCPKLKMPTELTKLSNLKELTLVKKVL 431 (442)
Q Consensus 403 l~~c~~l~~p~~l~~l~~L~~L~l~~n~l 431 (442)
..+|.++..| .+..++.|+.+|++.|.|
T Consensus 437 ahsN~l~~fP-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 437 AHSNQLLSFP-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred hcCCceeech-hhhhcCcceEEecccchh
Confidence 5555444444 444555555555555544
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=3.8e-20 Score=179.79 Aligned_cols=287 Identities=26% Similarity=0.257 Sum_probs=157.3
Q ss_pred eEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccc
Q 013456 131 LRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHL 210 (442)
Q Consensus 131 L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 210 (442)
|++||++++.+..+|..+..+.+|+.|+++.|.|..+|.+++++.+|++|+|.+|.+..+|..+..+.+|+.|++++|.+
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f 126 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHF 126 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhcc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666654
Q ss_pred cccccCCCCCCCCcccc-------------------cccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcC
Q 013456 211 QMSVQKPFVKPSLTNLR-------------------TLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQG 271 (442)
Q Consensus 211 ~~~~~~~~~~~~l~~L~-------------------~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 271 (442)
. .+|. .+..++.++ .+++..+.....++.++..++. .|++..|.+. ...++.
T Consensus 127 ~-~~Pl--~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~----~~dls~ 197 (1081)
T KOG0618|consen 127 G-PIPL--VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME----VLDLSN 197 (1081)
T ss_pred C-CCch--hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh----hhhhhh
Confidence 3 2222 233333333 3333333334444445555554 5677766442 233445
Q ss_pred CcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcE
Q 013456 272 LTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKA 351 (442)
Q Consensus 272 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 351 (442)
+.+|+.+....|....... .-++++.|....+........-.|.+|+.++++.+.+. ..|.|++.+++|+.
T Consensus 198 ~~~l~~l~c~rn~ls~l~~--------~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~ 268 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELEI--------SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEA 268 (1081)
T ss_pred ccchhhhhhhhcccceEEe--------cCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceE
Confidence 5566666555544332111 12334444443332221112223456666666666665 33466666666666
Q ss_pred EEeCcccccCc----------------------ccccCCCCCCcccEEEecccCCcceEEe-------------------
Q 013456 352 LRLFAHSYIGE----------------------KMTCGNGGFPQLRVLKLWVLKELKEWTI------------------- 390 (442)
Q Consensus 352 L~l~~~~~~~~----------------------~~~~~~~~~~~L~~L~l~~~~~l~~~~~------------------- 390 (442)
+....|.+... .+. ..+++.+|++|+|..+. +.+.|.
T Consensus 269 l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~-~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 269 LNANHNRLVALPLRISRITSLVSLSAAYNELEYIPP-FLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNK 346 (1081)
T ss_pred ecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCC-cccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhcc
Confidence 66655543221 111 13457777777777642 222211
Q ss_pred -------------------------------CCCccccccEEEeccCCCCCCCc-cCCCCCCCcEEEeccccccccCCC
Q 013456 391 -------------------------------EEGAMTALEKLEIRNCPKLKMPT-ELTKLSNLKELTLVKKVLKMKPED 437 (442)
Q Consensus 391 -------------------------------~~~~~~~L~~L~l~~c~~l~~p~-~l~~l~~L~~L~l~~n~l~~~p~~ 437 (442)
...+++.|+.|++++|+....|. .+.++..|++|+||||+++.+|+.
T Consensus 347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~t 425 (1081)
T KOG0618|consen 347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDT 425 (1081)
T ss_pred ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHH
Confidence 11245688888888887777743 456788888888888888888754
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=8.9e-18 Score=167.60 Aligned_cols=260 Identities=19% Similarity=0.149 Sum_probs=196.4
Q ss_pred ceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccc
Q 013456 129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDI 208 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 208 (442)
..-.+|+++++.+..+|..+. .+|+.|++.+|.++.+|.. +++|++|++++|+++.+|.. .++|+.|++++|
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 557789999999999998775 4899999999999999863 58899999999999988864 468999999999
Q ss_pred cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccC
Q 013456 209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYV 288 (442)
Q Consensus 209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 288 (442)
.+.. +|. ..++|+.|++.++.... ++. .+++|+.|++++|.+. .++.. ..+|+.|.+++|.+...
T Consensus 273 ~L~~-Lp~-----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~--~Lp~l---p~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 273 PLTH-LPA-----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA--SLPAL---PSELCKLWAYNNQLTSL 337 (788)
T ss_pred chhh-hhh-----chhhcCEEECcCCcccc-ccc---cccccceeECCCCccc--cCCCC---cccccccccccCccccc
Confidence 8763 331 23567778777775542 332 3478999999998653 34432 34688888998877655
Q ss_pred CccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCC
Q 013456 289 PSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGN 368 (442)
Q Consensus 289 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 368 (442)
|. ...+|+.|+++++... .+...|.+|+.|++++|.++. +|.. ..+|+.|++++|.+.. .+.
T Consensus 338 P~--------lp~~Lq~LdLS~N~Ls--~LP~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~--- 399 (788)
T PRK15387 338 PT--------LPSGLQELSVSDNQLA--SLPTLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPV--- 399 (788)
T ss_pred cc--------cccccceEecCCCccC--CCCCCCcccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCC---
Confidence 43 1257999999987422 233356789999999998874 4432 3579999999998874 222
Q ss_pred CCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEecccccccc
Q 013456 369 GGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMK 434 (442)
Q Consensus 369 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~ 434 (442)
..++|+.|++++|. +..+|. ...+|+.|++++|.+.++|..+..+++|+.|+|++|+++..
T Consensus 400 -l~s~L~~LdLS~N~-LssIP~---l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 400 -LPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred -cccCCCEEEccCCc-CCCCCc---chhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence 24689999999974 555653 24578999999999888899999999999999999999643
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=1.2e-16 Score=160.40 Aligned_cols=246 Identities=16% Similarity=0.169 Sum_probs=142.7
Q ss_pred ceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccc
Q 013456 129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDI 208 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 208 (442)
.+..+|+++++.+..+|..+. ++|+.|++++|.+..+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 567889999888888887664 578999999999998887764 589999999999988887654 47899999988
Q ss_pred cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccC
Q 013456 209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYV 288 (442)
Q Consensus 209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 288 (442)
.+. .+|. .+ .++|+.|++..+... .++..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.....
T Consensus 252 ~L~-~LP~--~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt--~LP~~lp--~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 252 RIT-ELPE--RL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR--TLPAHLP--SGITHLNVQSNSLTAL 319 (754)
T ss_pred ccC-cCCh--hH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc--cCcccch--hhHHHHHhcCCccccC
Confidence 775 3442 12 245666666555443 2333332 35666666666432 3333221 3566666666554433
Q ss_pred CccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCC
Q 013456 289 PSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGN 368 (442)
Q Consensus 289 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 368 (442)
+.. ++++|+.|++++|.++. +|..+ .++|+.|++++|.+.. .+..
T Consensus 320 P~~-----------------------------l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~-LP~~-- 364 (754)
T PRK15370 320 PET-----------------------------LPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV-LPET-- 364 (754)
T ss_pred Ccc-----------------------------ccccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc-CChh--
Confidence 221 12455555555555543 23222 2456666666655542 1111
Q ss_pred CCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCC----CCCCCcEEEeccccc
Q 013456 369 GGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELT----KLSNLKELTLVKKVL 431 (442)
Q Consensus 369 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~----~l~~L~~L~l~~n~l 431 (442)
-.++|+.|++++|. +..+|... .++|+.|++++|....+|..+. .++++..|++.+|++
T Consensus 365 -lp~~L~~LdLs~N~-Lt~LP~~l--~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 365 -LPPTITTLDVSRNA-LTNLPENL--PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred -hcCCcCEEECCCCc-CCCCCHhH--HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 12456666666542 33333221 1346666666665554444332 235556666666655
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=8.3e-16 Score=153.64 Aligned_cols=258 Identities=17% Similarity=0.072 Sum_probs=180.4
Q ss_pred ceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCC
Q 013456 97 LHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHS 176 (442)
Q Consensus 97 lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~ 176 (442)
-..|.+.++....+|... .++|+.|++.+|.+..+|.. +++|++|++++|.++.+|.. .++
T Consensus 203 ~~~LdLs~~~LtsLP~~l-------------~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~s 263 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-------------PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPG 263 (788)
T ss_pred CcEEEcCCCCCCcCCcch-------------hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccc
Confidence 445666666555555431 24688899998888888753 57889999999988888753 467
Q ss_pred CcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEE
Q 013456 177 LETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLI 256 (442)
Q Consensus 177 L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~ 256 (442)
|++|++++|.++.+|... .+|+.|++++|.+.. +|. .+++|+.|++.++.... ++. ...+|+.|+++
T Consensus 264 L~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~-LP~-----~p~~L~~LdLS~N~L~~-Lp~---lp~~L~~L~Ls 330 (788)
T PRK15387 264 LLELSIFSNPLTHLPALP---SGLCKLWIFGNQLTS-LPV-----LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAY 330 (788)
T ss_pred cceeeccCCchhhhhhch---hhcCEEECcCCcccc-ccc-----cccccceeECCCCcccc-CCC---Ccccccccccc
Confidence 889999999888777633 568888888887763 332 24678888887775543 222 12457778888
Q ss_pred eeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCC
Q 013456 257 CNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLS 336 (442)
Q Consensus 257 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 336 (442)
+|.+ ..+|. -..+|+.|++++|.+...|.. ..+|+.|.+.++... .+...+.+|+.|++++|.++
T Consensus 331 ~N~L--~~LP~---lp~~Lq~LdLS~N~Ls~LP~l--------p~~L~~L~Ls~N~L~--~LP~l~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 331 NNQL--TSLPT---LPSGLQELSVSDNQLASLPTL--------PSELYKLWAYNNRLT--SLPALPSGLKELIVSGNRLT 395 (788)
T ss_pred cCcc--ccccc---cccccceEecCCCccCCCCCC--------Ccccceehhhccccc--cCcccccccceEEecCCccc
Confidence 7754 33443 125788999998887765532 346777777765321 23334578999999999887
Q ss_pred CCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC
Q 013456 337 EDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM 411 (442)
Q Consensus 337 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ 411 (442)
. +|.. .++|+.|++++|.+.. .+. .+.+|+.|++++| .++.+|...+.+++|+.|++++|+....
T Consensus 396 ~-LP~l---~s~L~~LdLS~N~Lss-IP~----l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 396 S-LPVL---PSELKELMVSGNRLTS-LPM----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred C-CCCc---ccCCCEEEccCCcCCC-CCc----chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCch
Confidence 4 3432 3689999999998864 222 2457889999985 5677887778899999999999987754
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=2.1e-17 Score=129.96 Aligned_cols=158 Identities=23% Similarity=0.220 Sum_probs=78.0
Q ss_pred CceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeecc
Q 013456 128 YRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLND 207 (442)
Q Consensus 128 ~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 207 (442)
+.+.+.|-|++|.+..+|+.+.++++|+.|++.+|+++++|.+++.+++|+.|++..|++..+|.+++.++-|+.||+.+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccccc
Q 013456 208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY 287 (442)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 287 (442)
|.+... ..|..+-.++.|+.|.+.++.. ..+|..++.+++|+.|.+..|.. -.+|..++.+..|+.|.+.+|....
T Consensus 112 nnl~e~-~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndl--l~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 112 NNLNEN-SLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDL--LSLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred cccccc-cCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCch--hhCcHHHHHHHHHHHHhcccceeee
Confidence 544322 1122333444444444433332 23444455555555555554422 3445555555555555555554443
Q ss_pred CC
Q 013456 288 VP 289 (442)
Q Consensus 288 ~~ 289 (442)
.|
T Consensus 188 lp 189 (264)
T KOG0617|consen 188 LP 189 (264)
T ss_pred cC
Confidence 33
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=3e-17 Score=145.44 Aligned_cols=126 Identities=23% Similarity=0.270 Sum_probs=79.7
Q ss_pred eeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-hhhhhcccccceecccc-cccccCCcc-cccc
Q 013456 98 HSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-PETIGKLQLLRYVGLRR-TFIDSIPKS-LGDL 174 (442)
Q Consensus 98 r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~-~~i~~lp~~-~~~l 174 (442)
..+.+..+....+|++.| +.+++||.|||++|.+..+ |..|..++.|-.|-+.+ |.|+++|.. |++|
T Consensus 70 veirLdqN~I~~iP~~aF----------~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAF----------KTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred eEEEeccCCcccCChhhc----------cchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 334455666666666544 3367777777777776665 45677777777766666 677777654 5777
Q ss_pred CCCcEEeecCcccc-ccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccC
Q 013456 175 HSLETLDMKHTNIT-SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIG 235 (442)
Q Consensus 175 ~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~ 235 (442)
..|+.|.+.-|++. .....+..+++|..|.+.+|.+...-.. .+..+.+++.+++..++
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~--tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKG--TFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccc--cccchhccchHhhhcCc
Confidence 77777777777776 3345566777777777777765432211 35566666666655443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.57 E-value=1.5e-16 Score=148.08 Aligned_cols=261 Identities=17% Similarity=0.086 Sum_probs=140.9
Q ss_pred cCceeEEEecCCCCCC-----CChhhhhcccccceeccccccccc-------CCccccccCCCcEEeecCcccc-ccchh
Q 013456 127 GYRLLRVLDLEDVYKP-----VLPETIGKLQLLRYVGLRRTFIDS-------IPKSLGDLHSLETLDMKHTNIT-SLPKS 193 (442)
Q Consensus 127 ~~~~L~~L~l~~~~~~-----~l~~~l~~l~~L~~L~L~~~~i~~-------lp~~~~~l~~L~~L~L~~~~l~-~lp~~ 193 (442)
.+.+|++|+++++.+. .++..+...+.|++|+++++.+.. ++..+.++++|++|++++|.+. ..+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 3556888888877652 244556666677777777765542 2234556667777777777665 34444
Q ss_pred hhcccc---cceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccc-cCcceeeEEeecccc---chhH
Q 013456 194 IWKVKT---LRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENL-SDLKNLGLICNIASL---GKIT 266 (442)
Q Consensus 194 i~~l~~---L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~---~~~~ 266 (442)
+..+.+ |++|++++|.+..... ......+..+ ++|+.|++++|.+.. ..+.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~----------------------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGL----------------------RLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHH----------------------HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 544444 7777777665432100 0112233344 566666666665431 1233
Q ss_pred HhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCC----Cccc
Q 013456 267 NLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSED----PMPV 342 (442)
Q Consensus 267 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~ 342 (442)
..+..+.+|+.|++++|........... ..+... ++|+.|++++|.+++. ....
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~---------------------~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALA---------------------EGLKAN-CNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHH---------------------HHHHhC-CCCCEEeccCCccChHHHHHHHHH
Confidence 3444555666666666543321000000 001112 4666677766665532 2234
Q ss_pred ccCCCCCcEEEeCcccccCcccccCC----CCCCcccEEEecccCCcc----eEEeCCCccccccEEEeccCCCCCC---
Q 013456 343 LGQLRELKALRLFAHSYIGEKMTCGN----GGFPQLRVLKLWVLKELK----EWTIEEGAMTALEKLEIRNCPKLKM--- 411 (442)
Q Consensus 343 l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~----~~~~~~~~~~~L~~L~l~~c~~l~~--- 411 (442)
+..+++|+.|++++|.+.+....... ...+.|++|++++|.... .+......+++|+.+++++|.....
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 55667788888877776542222111 124678888887764321 1112223457788888888876643
Q ss_pred --CccCCCC-CCCcEEEeccccc
Q 013456 412 --PTELTKL-SNLKELTLVKKVL 431 (442)
Q Consensus 412 --p~~l~~l-~~L~~L~l~~n~l 431 (442)
...+... +.|+++++.+|++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHhhcCCchhhcccCCCCC
Confidence 2222333 5788888777653
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=5.6e-17 Score=127.64 Aligned_cols=155 Identities=22% Similarity=0.247 Sum_probs=123.6
Q ss_pred hhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCccc
Q 013456 147 TIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNL 226 (442)
Q Consensus 147 ~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 226 (442)
.+.++.+...|.|++|.+..+|..++.+.+|+.|++.+|+++++|..++.+++|++|+++-|.+. .. |.+++.++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~l--prgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-IL--PRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cC--ccccCCCchh
Confidence 34567788999999999999999999999999999999999999999999999999999988765 33 3479999999
Q ss_pred ccccccccCCC-CCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCce
Q 013456 227 RTLWGLSIGKK-SPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKE 305 (442)
Q Consensus 227 ~~L~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~ 305 (442)
+.|++.++... ...|..|-.++-|+.|+++.|.+ +.+|..++++++|+.|.+..|...+.|.+ +..+..|++
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~lrdndll~lpke-----ig~lt~lre 177 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILSLRDNDLLSLPKE-----IGDLTRLRE 177 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEeeccCchhhCcHH-----HHHHHHHHH
Confidence 99998887665 35666777788888888888754 67788888888888888888877666554 233444444
Q ss_pred EEeccc
Q 013456 306 LYLLGR 311 (442)
Q Consensus 306 l~l~~~ 311 (442)
|++-|+
T Consensus 178 lhiqgn 183 (264)
T KOG0617|consen 178 LHIQGN 183 (264)
T ss_pred Hhcccc
Confidence 444443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=1.3e-14 Score=145.97 Aligned_cols=247 Identities=17% Similarity=0.152 Sum_probs=162.1
Q ss_pred ccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCcccccc
Q 013456 95 EYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDL 174 (442)
Q Consensus 95 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l 174 (442)
.+...|.+.+.....+|... .+.|+.|++++|.+..+|..+. .+|++|++++|.+..+|..+.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-------------p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~-- 240 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-------------PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP-- 240 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-------------ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--
Confidence 34455666655444444320 2568999999999989987664 589999999999998987664
Q ss_pred CCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceee
Q 013456 175 HSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLG 254 (442)
Q Consensus 175 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~ 254 (442)
.+|+.|++++|.+..+|..+. .+|+.|++++|.+. .+|. .+ .++|+.|++.++.... ++..+ .++|+.|+
T Consensus 241 ~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~--~l--~~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~ 310 (754)
T PRK15370 241 DTIQEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPE--NL--PEELRYLSVYDNSIRT-LPAHL--PSGITHLN 310 (754)
T ss_pred ccccEEECcCCccCcCChhHh--CCCCEEECcCCccC-cccc--cc--CCCCcEEECCCCcccc-Ccccc--hhhHHHHH
Confidence 479999999999999888764 58999999998876 3443 23 2578888888876543 33322 24788899
Q ss_pred EEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccC
Q 013456 255 LICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSY 334 (442)
Q Consensus 255 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 334 (442)
+++|.+. .+|..+ .++|+.|.+++|.....+... +++|+.|+++++.... ....++++|+.|++++|.
T Consensus 311 Ls~N~Lt--~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l-------~~sL~~L~Ls~N~L~~-LP~~lp~~L~~LdLs~N~ 378 (754)
T PRK15370 311 VQSNSLT--ALPETL--PPGLKTLEAGENALTSLPASL-------PPELQVLDVSKNQITV-LPETLPPTITTLDVSRNA 378 (754)
T ss_pred hcCCccc--cCCccc--cccceeccccCCccccCChhh-------cCcccEEECCCCCCCc-CChhhcCCcCEEECCCCc
Confidence 9988653 344433 368999999998776555421 2567777777663211 111234677777777777
Q ss_pred CCCCCcccccCCCCCcEEEeCcccccCcc--cccCCCCCCcccEEEecccC
Q 013456 335 LSEDPMPVLGQLRELKALRLFAHSYIGEK--MTCGNGGFPQLRVLKLWVLK 383 (442)
Q Consensus 335 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~ 383 (442)
++. +|..+. .+|+.|++++|.+.... .......++++..|.+.+|+
T Consensus 379 Lt~-LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 379 LTN-LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCC-CCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 663 343332 35777777777665321 11113345666777777654
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.54 E-value=1.3e-14 Score=148.15 Aligned_cols=324 Identities=25% Similarity=0.253 Sum_probs=210.3
Q ss_pred ccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCC--CCCChh-hhhcccccceecccccc-ccc
Q 013456 91 KKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVY--KPVLPE-TIGKLQLLRYVGLRRTF-IDS 166 (442)
Q Consensus 91 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~l~~-~l~~l~~L~~L~L~~~~-i~~ 166 (442)
.......|...+.++....++.. ..++.|++|-+.++. +..++. .|..+++|++|||++|. +..
T Consensus 519 ~~~~~~~rr~s~~~~~~~~~~~~------------~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEHIAGS------------SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK 586 (889)
T ss_pred ccchhheeEEEEeccchhhccCC------------CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence 34557777777777655444432 456789999999775 566655 57789999999999864 789
Q ss_pred CCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccC--CCCCchhhh
Q 013456 167 IPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIG--KKSPPLNWL 244 (442)
Q Consensus 167 lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~--~~~~~~~~l 244 (442)
+|++++.|-+||+|+++++.++.+|.++.+|.+|.+|++..+...... +.....+++|++|.+.... .......++
T Consensus 587 LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el 664 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSALSNDKLLLKEL 664 (889)
T ss_pred CChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc--cchhhhcccccEEEeeccccccchhhHHhh
Confidence 999999999999999999999999999999999999999988765444 3245569999999987664 223445556
Q ss_pred ccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccC---
Q 013456 245 ENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHEL--- 321 (442)
Q Consensus 245 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~--- 321 (442)
..+.+|+.+.+..... .+...+..+..|..+...-... ..........+..+.+|+.|.+.++......+...
T Consensus 665 ~~Le~L~~ls~~~~s~---~~~e~l~~~~~L~~~~~~l~~~-~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~ 740 (889)
T KOG4658|consen 665 ENLEHLENLSITISSV---LLLEDLLGMTRLRSLLQSLSIE-GCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESL 740 (889)
T ss_pred hcccchhhheeecchh---HhHhhhhhhHHHHHHhHhhhhc-ccccceeecccccccCcceEEEEcCCCchhhccccccc
Confidence 6666777666654321 2222233444444332211100 01112223456678889999997764311111110
Q ss_pred -----CCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccccc---------CCCCCCcccEE-EecccCCcc
Q 013456 322 -----PPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTC---------GNGGFPQLRVL-KLWVLKELK 386 (442)
Q Consensus 322 -----~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---------~~~~~~~L~~L-~l~~~~~l~ 386 (442)
++++..+.+..|... ..+.+....|+|+.|.+..|...+.+... ....|++++.+ .+.+.+.+.
T Consensus 741 ~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~ 819 (889)
T KOG4658|consen 741 IVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLP 819 (889)
T ss_pred chhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCc
Confidence 134444445555433 23445566799999999998776554332 01235556666 355555666
Q ss_pred eEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccc--cccccCCCCC
Q 013456 387 EWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKK--VLKMKPEDAW 439 (442)
Q Consensus 387 ~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n--~l~~~p~~~~ 439 (442)
.+....-.++.|+.+.+..|+.+. .+|.+.++.+.+| .+...|+..|
T Consensus 820 ~i~~~~l~~~~l~~~~ve~~p~l~------~~P~~~~~~i~~~~~~~~~~~~~~~ 868 (889)
T KOG4658|consen 820 QLYWLPLSFLKLEELIVEECPKLG------KLPLLSTLTIVGCEEKLKEYPDGEW 868 (889)
T ss_pred eeEecccCccchhheehhcCcccc------cCccccccceeccccceeecCCccc
Confidence 655555556678888888876554 5667777888885 6677777654
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=9.4e-16 Score=142.74 Aligned_cols=118 Identities=19% Similarity=0.095 Sum_probs=81.7
Q ss_pred CCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCC-------Chhhhhcccccceecccc
Q 013456 89 SDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPV-------LPETIGKLQLLRYVGLRR 161 (442)
Q Consensus 89 ~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------l~~~l~~l~~L~~L~L~~ 161 (442)
..+..+.+++.+.+.+..... .....+.+ .+...+.++.|+++++.+.. ++..+..+++|++|++++
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~---~~~~~i~~---~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 90 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGE---EAAKALAS---ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSD 90 (319)
T ss_pred HHHHHHhhccEEeecCCCCcH---HHHHHHHH---HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccC
Confidence 344566778888888764321 11122111 23567889999999876653 345677788999999999
Q ss_pred cccc-cCCccccccCC---CcEEeecCcccc-----ccchhhhcc-cccceeeeccccccc
Q 013456 162 TFID-SIPKSLGDLHS---LETLDMKHTNIT-----SLPKSIWKV-KTLRHLYLNDIHLQM 212 (442)
Q Consensus 162 ~~i~-~lp~~~~~l~~---L~~L~L~~~~l~-----~lp~~i~~l-~~L~~L~l~~~~~~~ 212 (442)
|.+. ..+..+..+.. |++|++++|++. .+...+..+ ++|+.|++++|.+..
T Consensus 91 ~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 151 (319)
T cd00116 91 NALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG 151 (319)
T ss_pred CCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc
Confidence 8876 34445555554 999999999877 233455667 899999999998763
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.48 E-value=1.4e-15 Score=134.98 Aligned_cols=269 Identities=22% Similarity=0.166 Sum_probs=158.2
Q ss_pred ceeEEEecCCCCCCCChh-hhhcccccceecccccccccC-CccccccCCCcEEeecC-ccccccchh-hhcccccceee
Q 013456 129 RLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKH-TNITSLPKS-IWKVKTLRHLY 204 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~-~~l~~lp~~-i~~l~~L~~L~ 204 (442)
+.-..++|.-|.+..+|+ +|+.+++||.|+|+.|.|..| |+.|.++..|..|-+.+ |+|+++|.. +++|..|+-|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 457788999999999987 788999999999999999988 88899999988888877 789999875 66899999998
Q ss_pred eccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccch-----------hHHhhcCCc
Q 013456 205 LNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGK-----------ITNLIQGLT 273 (442)
Q Consensus 205 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----------~~~~l~~l~ 273 (442)
+.-|++.-.... .+..+++|..|.+.++.........+..+..++.+.+..|.+.... .+-.++...
T Consensus 147 lNan~i~Cir~~--al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 147 LNANHINCIRQD--ALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred cChhhhcchhHH--HHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 888877533322 4778888888887777665544446677777777777655321010 111112222
Q ss_pred ccccceeeccccccCCccccccccCCcCCCceE--Eecc-ccC----CCcccccCCCceeEEEEeccCCCCCCcccccCC
Q 013456 274 SLESLRLRSINDFYVPSDLAIGSLNNHKELKEL--YLLG-RLP----GPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQL 346 (442)
Q Consensus 274 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l--~l~~-~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 346 (442)
......+....+...+... +... ++.+ .+.+ +.+ +...+..+ ++|++|++++|.++..-..+|..+
T Consensus 225 c~~p~rl~~~Ri~q~~a~k----f~c~--~esl~s~~~~~d~~d~~cP~~cf~~L-~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARK----FLCS--LESLPSRLSSEDFPDSICPAKCFKKL-PNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred ecchHHHHHHHhcccchhh----hhhh--HHhHHHhhccccCcCCcChHHHHhhc-ccceEeccCCCccchhhhhhhcch
Confidence 2222222222221111110 0000 1111 0000 000 01123333 566666666666665555566666
Q ss_pred CCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCC
Q 013456 347 RELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCP 407 (442)
Q Consensus 347 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 407 (442)
..++.|.|..|.+... -...+.++..|+.|+|++|....--+..+....+|.+|.+-.|+
T Consensus 298 a~l~eL~L~~N~l~~v-~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFV-SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhhhhcCcchHHHH-HHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 6666666666655321 12225566666666666654333333344445555556554443
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=2.5e-11 Score=99.95 Aligned_cols=129 Identities=25% Similarity=0.282 Sum_probs=45.3
Q ss_pred hcCceeEEEecCCCCCCCChhhhh-cccccceecccccccccCCccccccCCCcEEeecCccccccchhhh-ccccccee
Q 013456 126 RGYRLLRVLDLEDVYKPVLPETIG-KLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIW-KVKTLRHL 203 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~l~~~l~-~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~-~l~~L~~L 203 (442)
-+...+|.|+|.++.+..+. .++ .+.+|+.|++++|.|..++ .+..+++|++|++++|.++.+...+. .+++|++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 44567899999999888774 455 5788999999999998885 58889999999999999998876664 68999999
Q ss_pred eeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccc--hhHHhhcCCcccccceee
Q 013456 204 YLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLG--KITNLIQGLTSLESLRLR 281 (442)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~ 281 (442)
++++|.+...... ..+..+++|+.|++.+|+.... .-...+..+++|+.|+-.
T Consensus 94 ~L~~N~I~~l~~l-------------------------~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNEL-------------------------EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCC-------------------------GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHh-------------------------HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 9999876532111 1234455566666655543311 123344556667666543
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=4.4e-12 Score=118.13 Aligned_cols=133 Identities=23% Similarity=0.274 Sum_probs=99.0
Q ss_pred CceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeecc
Q 013456 128 YRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLND 207 (442)
Q Consensus 128 ~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 207 (442)
+.--...|++.|.+..+|..+..+..|+.+.|+.|.+..+|..++++..|.+|||+.|++..+|..++.|+ |+.|-+++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 45566778899999999999999999999999999999999999999999999999999999999998876 88898888
Q ss_pred ccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccccc
Q 013456 208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY 287 (442)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 287 (442)
|++. ..|. .++.+. .|..|+.+.|.+ ..++..++++.+|+.|.+..|....
T Consensus 153 Nkl~-~lp~--~ig~~~------------------------tl~~ld~s~nei--~slpsql~~l~slr~l~vrRn~l~~ 203 (722)
T KOG0532|consen 153 NKLT-SLPE--EIGLLP------------------------TLAHLDVSKNEI--QSLPSQLGYLTSLRDLNVRRNHLED 203 (722)
T ss_pred Cccc-cCCc--ccccch------------------------hHHHhhhhhhhh--hhchHHhhhHHHHHHHHHhhhhhhh
Confidence 8765 3343 244444 444455554432 4455555566666666666655554
Q ss_pred CCc
Q 013456 288 VPS 290 (442)
Q Consensus 288 ~~~ 290 (442)
.|.
T Consensus 204 lp~ 206 (722)
T KOG0532|consen 204 LPE 206 (722)
T ss_pred CCH
Confidence 444
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.1e-11 Score=110.24 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=28.0
Q ss_pred cccccceecccccccccCCc--cccccCCCcEEeecCcccc---ccchhhhcccccceeeecccccc
Q 013456 150 KLQLLRYVGLRRTFIDSIPK--SLGDLHSLETLDMKHTNIT---SLPKSIWKVKTLRHLYLNDIHLQ 211 (442)
Q Consensus 150 ~l~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~ 211 (442)
++++||...|.++.+...+. ....|++++.|||+.|-+. .+-.....|++|+.|+++.|.+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 34455555555544443331 3344555555555555322 22222334555555555555443
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=7.4e-12 Score=110.05 Aligned_cols=185 Identities=22% Similarity=0.185 Sum_probs=98.8
Q ss_pred hcCceeEEEecCCCCCCC-----Chhhhhcccccceeccccccc----ccCCcc-------ccccCCCcEEeecCcccc-
Q 013456 126 RGYRLLRVLDLEDVYKPV-----LPETIGKLQLLRYVGLRRTFI----DSIPKS-------LGDLHSLETLDMKHTNIT- 188 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~L~~~~i----~~lp~~-------~~~l~~L~~L~L~~~~l~- 188 (442)
..+..++.|+|+||.++. +...+.+.+.|+..+++.-.. .++|+. +..+++|++||||+|-+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 346667777777776543 334555666777777765322 233432 334567788888877444
Q ss_pred c----cchhhhcccccceeeecccccccccc-----------CCCCCCCCcccccccccccCCCC----CchhhhccccC
Q 013456 189 S----LPKSIWKVKTLRHLYLNDIHLQMSVQ-----------KPFVKPSLTNLRTLWGLSIGKKS----PPLNWLENLSD 249 (442)
Q Consensus 189 ~----lp~~i~~l~~L~~L~l~~~~~~~~~~-----------~~~~~~~l~~L~~L~~~~~~~~~----~~~~~l~~l~~ 249 (442)
. +-.-+.++..|++|++.+|.+...-. ...-+..-+.|+++....++... .+...+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 2 22335567778888887776532110 01113344556665555444432 23445566677
Q ss_pred cceeeEEeeccccc---hhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecc
Q 013456 250 LKNLGLICNIASLG---KITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLG 310 (442)
Q Consensus 250 L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 310 (442)
|+.+.+..|.+... .+...+..+++|+.|++.+|.+...-.......++.+++|+.+++..
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 77777776644322 23445666777777777776554322222223333444444444443
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.5e-11 Score=108.84 Aligned_cols=186 Identities=22% Similarity=0.160 Sum_probs=112.3
Q ss_pred hhccccCcceeeEEeeccc-cchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcc---c
Q 013456 243 WLENLSDLKNLGLICNIAS-LGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLK---L 318 (442)
Q Consensus 243 ~l~~l~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~---~ 318 (442)
....+++++.|+++.|-+. ...+......+++|+.|+++.|.......... -...+.|+.|.+++|...+.. +
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~~l~~lK~L~l~~CGls~k~V~~~ 217 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---TLLLSHLKQLVLNSCGLSWKDVQWI 217 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc---hhhhhhhheEEeccCCCCHHHHHHH
Confidence 3456677777777766332 23344555667788888888776543322211 114566777777776433322 2
Q ss_pred ccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCC------
Q 013456 319 HELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEE------ 392 (442)
Q Consensus 319 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~------ 392 (442)
...+|+|+.|++..|..-........-+..|+.|+|++|.+.+.......+.||.|+.|.++.|. +.++....
T Consensus 218 ~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~k 296 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDK 296 (505)
T ss_pred HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhh
Confidence 22347788888877742112222333456778888888877654433446778888888887753 33333222
Q ss_pred -CccccccEEEeccCCCCCC--CccCCCCCCCcEEEecccccc
Q 013456 393 -GAMTALEKLEIRNCPKLKM--PTELTKLSNLKELTLVKKVLK 432 (442)
Q Consensus 393 -~~~~~L~~L~l~~c~~l~~--p~~l~~l~~L~~L~l~~n~l~ 432 (442)
..+|+|+.|++..|++.++ ...+..+++|+.|.+.+|.+.
T Consensus 297 t~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 297 THTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 3578888888888887665 445666777777777777664
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.06 E-value=1.1e-11 Score=109.05 Aligned_cols=252 Identities=18% Similarity=0.175 Sum_probs=128.8
Q ss_pred hhhhcccccceecccccccc-----cCCccccccCCCcEEeecCc---ccc-ccchhh-------hcccccceeeecccc
Q 013456 146 ETIGKLQLLRYVGLRRTFID-----SIPKSLGDLHSLETLDMKHT---NIT-SLPKSI-------WKVKTLRHLYLNDIH 209 (442)
Q Consensus 146 ~~l~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~---~l~-~lp~~i-------~~l~~L~~L~l~~~~ 209 (442)
+.+.....+.+++|++|.++ .+...+.+.++|+.-++++= +.. ++|+.+ ..+++|+.|++++|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 34556778889999998776 23445666778888887764 222 555443 355688888888876
Q ss_pred ccccccCC--CCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccccc
Q 013456 210 LQMSVQKP--FVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY 287 (442)
Q Consensus 210 ~~~~~~~~--~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 287 (442)
+....+.. ..+.++..|++|.+.+|.....-...++. -|.+|. ........++|+.+....|....
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~----------~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA----------VNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH----------HHhccCCCcceEEEEeecccccc
Confidence 54221110 01233344444444433332211111110 000000 01112233455555555554443
Q ss_pred CCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCC----CcccccCCCCCcEEEeCcccccCcc
Q 013456 288 VPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSED----PMPVLGQLRELKALRLFAHSYIGEK 363 (442)
Q Consensus 288 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~ 363 (442)
.+.......++.+ +.|+.+.++.|.+... ....+..+++|+.|+|.+|.++...
T Consensus 172 ~ga~~~A~~~~~~----------------------~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg 229 (382)
T KOG1909|consen 172 GGATALAEAFQSH----------------------PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG 229 (382)
T ss_pred ccHHHHHHHHHhc----------------------cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH
Confidence 3332222222223 4555555555544321 2234566777777777777665432
Q ss_pred ---cccCCCCCCcccEEEecccCCcceE-----EeCCCccccccEEEeccCCCCCC-----CccCCCCCCCcEEEecccc
Q 013456 364 ---MTCGNGGFPQLRVLKLWVLKELKEW-----TIEEGAMTALEKLEIRNCPKLKM-----PTELTKLSNLKELTLVKKV 430 (442)
Q Consensus 364 ---~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~~L~~L~l~~c~~l~~-----p~~l~~l~~L~~L~l~~n~ 430 (442)
....+..++.|+.|.+++|..-..- .......|+|+.|.+.+|.+... ...+...+.|+.|+|++|.
T Consensus 230 s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 230 SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 2223556667777777776422211 11123467778888777777653 2233456777788888887
Q ss_pred c
Q 013456 431 L 431 (442)
Q Consensus 431 l 431 (442)
+
T Consensus 310 l 310 (382)
T KOG1909|consen 310 L 310 (382)
T ss_pred c
Confidence 7
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=5.6e-10 Score=107.00 Aligned_cols=85 Identities=28% Similarity=0.454 Sum_probs=64.5
Q ss_pred cCceeEEEecCCCCCCCChhhhhccc-ccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456 127 GYRLLRVLDLEDVYKPVLPETIGKLQ-LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL 205 (442)
Q Consensus 127 ~~~~L~~L~l~~~~~~~l~~~l~~l~-~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 205 (442)
.++.++.|++.++.+..++.....+. +|++|++++|.+..+|..++.+++|+.|+++.|++.++|...+.++.|+.|++
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 35667788888777777777766664 78888888887777776777788888888888888777777767777888888
Q ss_pred cccccc
Q 013456 206 NDIHLQ 211 (442)
Q Consensus 206 ~~~~~~ 211 (442)
++|.+.
T Consensus 194 s~N~i~ 199 (394)
T COG4886 194 SGNKIS 199 (394)
T ss_pred cCCccc
Confidence 777665
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=3.2e-11 Score=112.53 Aligned_cols=158 Identities=25% Similarity=0.286 Sum_probs=133.7
Q ss_pred cCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeec
Q 013456 127 GYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLN 206 (442)
Q Consensus 127 ~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 206 (442)
.|-.|..+.++.|.+..+|..++++..|.||+|+.|++..+|..++.|+ |+.|-+++|+++.+|..++.+..|.+|+.+
T Consensus 96 ~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 96 AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred HHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhh
Confidence 3566888889989999999999999999999999999999999988775 999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456 207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF 286 (442)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 286 (442)
.|.+.. .|. .++.+.+|+.|.+..+... .+++++..+ .|..||+++|.+ ..+|-.+.+|++|++|-|.+|...
T Consensus 175 ~nei~s-lps--ql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki--s~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 175 KNEIQS-LPS--QLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI--SYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhh-chH--HhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce--eecchhhhhhhhheeeeeccCCCC
Confidence 998763 333 5889999999987776654 456667744 588999999955 688999999999999999999887
Q ss_pred cCCccc
Q 013456 287 YVPSDL 292 (442)
Q Consensus 287 ~~~~~~ 292 (442)
+.|..+
T Consensus 248 SPPAqI 253 (722)
T KOG0532|consen 248 SPPAQI 253 (722)
T ss_pred CChHHH
Confidence 765543
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.9e-11 Score=105.23 Aligned_cols=159 Identities=21% Similarity=0.144 Sum_probs=77.8
Q ss_pred CCcccccccccccCCCCCchhhhccccCcceeeEEeecc-ccchhHHhhcCCcccccceeeccccccCCccccccccCCc
Q 013456 222 SLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIA-SLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNH 300 (442)
Q Consensus 222 ~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 300 (442)
.+.+|+.|++.+....+.+...++.-.+|+.|+++.+.. +...+.-.+..++.|..|+++||..+.......... -.
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h--is 285 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH--IS 285 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh--hc
Confidence 334444444444444444555666667777777775532 212233445667788888888876554322111111 13
Q ss_pred CCCceEEeccccC-----CCcccccCCCceeEEEEeccC-CCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcc
Q 013456 301 KELKELYLLGRLP-----GPLKLHELPPNLRIFTLSLSY-LSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQL 374 (442)
Q Consensus 301 ~~L~~l~l~~~~~-----~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 374 (442)
++|..|+++|+.. ....+.+-+++|..|||++|. ++......+.+++.|++|.++.|..........+...|+|
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl 365 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSL 365 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcce
Confidence 4555556655421 011222224566666666653 3333344455556666666655543221111124445555
Q ss_pred cEEEeccc
Q 013456 375 RVLKLWVL 382 (442)
Q Consensus 375 ~~L~l~~~ 382 (442)
.+|++.+|
T Consensus 366 ~yLdv~g~ 373 (419)
T KOG2120|consen 366 VYLDVFGC 373 (419)
T ss_pred EEEEeccc
Confidence 55555554
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=1.6e-10 Score=99.69 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=75.8
Q ss_pred CceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEE
Q 013456 323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLE 402 (442)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 402 (442)
|.++.|+++.|.++.. ..+..+++|+.|++++|.++... .+-..+.+.++|.+++| .++++.. .+.+-+|..|+
T Consensus 307 Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~--Gwh~KLGNIKtL~La~N-~iE~LSG-L~KLYSLvnLD 380 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECV--GWHLKLGNIKTLKLAQN-KIETLSG-LRKLYSLVNLD 380 (490)
T ss_pred cceeEEeccccceeee--hhhhhcccceEeecccchhHhhh--hhHhhhcCEeeeehhhh-hHhhhhh-hHhhhhheecc
Confidence 6778888888877643 23777788888888888765422 12345777888888874 3333321 23466788888
Q ss_pred eccCCCCCC--CccCCCCCCCcEEEeccccccccCC
Q 013456 403 IRNCPKLKM--PTELTKLSNLKELTLVKKVLKMKPE 436 (442)
Q Consensus 403 l~~c~~l~~--p~~l~~l~~L~~L~l~~n~l~~~p~ 436 (442)
+++|++-+. ..+++++|-|+.+.+.+|++..+|+
T Consensus 381 l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 381 LSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 888887765 7778888888888888888887765
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=7.6e-11 Score=101.52 Aligned_cols=183 Identities=20% Similarity=0.090 Sum_probs=127.6
Q ss_pred ccccccccccCCCC-CchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCC
Q 013456 225 NLRTLWGLSIGKKS-PPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKEL 303 (442)
Q Consensus 225 ~L~~L~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L 303 (442)
.||.+++....... .....+..+.+|+.|.+.++... +.+...+.+-.+|+.|+++.++..+.-. .--.+..+..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld-D~I~~~iAkN~~L~~lnlsm~sG~t~n~--~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD-DPIVNTIAKNSNLVRLNLSMCSGFTENA--LQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC-cHHHHHHhccccceeeccccccccchhH--HHHHHHhhhhH
Confidence 46666665544432 23345788999999999998876 7788888889999999999987654221 11235578889
Q ss_pred ceEEeccccCC----CcccccCCCceeEEEEeccCC--CCCCc-ccccCCCCCcEEEeCcccccCcccccCCCCCCcccE
Q 013456 304 KELYLLGRLPG----PLKLHELPPNLRIFTLSLSYL--SEDPM-PVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRV 376 (442)
Q Consensus 304 ~~l~l~~~~~~----~~~~~~~~~~L~~L~l~~~~~--~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 376 (442)
+.|+++.+... ...+...-++|+.|+++++.- ..... ....++|+|..|+|++|..........+..|+.|++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 99999876432 222334457899999998742 22222 234679999999999986654443344778999999
Q ss_pred EEecccCCcc-eEEeCCCccccccEEEeccCCCCC
Q 013456 377 LKLWVLKELK-EWTIEEGAMTALEKLEIRNCPKLK 410 (442)
Q Consensus 377 L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c~~l~ 410 (442)
|.++.|..+. +--.....+|+|.+|++.+|-..+
T Consensus 343 lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt 377 (419)
T KOG2120|consen 343 LSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDT 377 (419)
T ss_pred eehhhhcCCChHHeeeeccCcceEEEEeccccCch
Confidence 9999987553 222345678999999999986543
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=1.1e-09 Score=90.35 Aligned_cols=127 Identities=23% Similarity=0.214 Sum_probs=49.2
Q ss_pred ccccceeEEEEeecCCCCCCchhhhHHHHHHhhh-cCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccc
Q 013456 93 QFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIR-GYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSL 171 (442)
Q Consensus 93 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~ 171 (442)
+..++|.|.+.++....+. .+. .+.+|++|++++|.+.++. .+..+++|+.|++++|.|.++++.+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie------------~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE------------NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred ccccccccccccccccccc------------chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 4446677777776533221 112 4688999999999998884 5778999999999999999997666
Q ss_pred -cccCCCcEEeecCccccccc--hhhhcccccceeeeccccccccccC-CCCCCCCccccccccc
Q 013456 172 -GDLHSLETLDMKHTNITSLP--KSIWKVKTLRHLYLNDIHLQMSVQK-PFVKPSLTNLRTLWGL 232 (442)
Q Consensus 172 -~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~-~~~~~~l~~L~~L~~~ 232 (442)
..+++|++|++++|+|..+. ..+..+++|++|++.+|.+...... ...+..+|+|+.|+..
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 46899999999999887543 4577899999999999976532110 0123444555555533
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.79 E-value=3e-10 Score=102.29 Aligned_cols=107 Identities=26% Similarity=0.374 Sum_probs=50.9
Q ss_pred CceeEEEEeccC-CCCCCccccc-CCCCCcEEEeCcccccCcc-cccCCCCCCcccEEEecccCCcceE-----EeCCCc
Q 013456 323 PNLRIFTLSLSY-LSEDPMPVLG-QLRELKALRLFAHSYIGEK-MTCGNGGFPQLRVLKLWVLKELKEW-----TIEEGA 394 (442)
Q Consensus 323 ~~L~~L~l~~~~-~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~ 394 (442)
.+|+.+.++.|. +++.-...++ +++.|+.+++.++...... +.....+++.|+.|.++.|..++.- .....+
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 455555555542 2322222332 2455555555555443222 1122345556666666655443322 122234
Q ss_pred cccccEEEeccCCCCCC--CccCCCCCCCcEEEeccc
Q 013456 395 MTALEKLEIRNCPKLKM--PTELTKLSNLKELTLVKK 429 (442)
Q Consensus 395 ~~~L~~L~l~~c~~l~~--p~~l~~l~~L~~L~l~~n 429 (442)
+..|+.+.+.+|+.... .+.+..+++|+.+++-+|
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 55566666666655543 444555566666665555
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=5e-09 Score=100.45 Aligned_cols=178 Identities=26% Similarity=0.249 Sum_probs=135.7
Q ss_pred cccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcC-ceeEEEecCCCCCCCChhhhhcccccceecccccccccCCcc
Q 013456 92 KQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGY-RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS 170 (442)
Q Consensus 92 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~ 170 (442)
...+.+..+.+.++....++.. ...+ ++|+.|+++++.+..+|..+..++.|+.|++++|.+.++|..
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~-----------~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~ 181 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPL-----------IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL 181 (394)
T ss_pred hcccceeEEecCCcccccCccc-----------cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh
Confidence 3446788888888776666543 0123 389999999999999998999999999999999999999988
Q ss_pred ccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCc
Q 013456 171 LGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDL 250 (442)
Q Consensus 171 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L 250 (442)
.+.+++|+.|++++|.+..+|..+..+..|+.|.+++|....... .+.+++++..+.+..+... ..+..++.++++
T Consensus 182 ~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~---~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l 257 (394)
T COG4886 182 LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLS---SLSNLKNLSGLELSNNKLE-DLPESIGNLSNL 257 (394)
T ss_pred hhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecch---hhhhcccccccccCCceee-eccchhcccccc
Confidence 778999999999999999999988888889999999995332222 3677777777764443322 224567777888
Q ss_pred ceeeEEeeccccchhHHhhcCCcccccceeecccccc
Q 013456 251 KNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY 287 (442)
Q Consensus 251 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 287 (442)
+.|+++.|... .+.. +..+.+++.|+++++....
T Consensus 258 ~~L~~s~n~i~--~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 258 ETLDLSNNQIS--SISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ceecccccccc--cccc-ccccCccCEEeccCccccc
Confidence 88888887543 3333 6677788888887766544
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=1.6e-09 Score=93.58 Aligned_cols=130 Identities=26% Similarity=0.187 Sum_probs=65.0
Q ss_pred cccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccc
Q 013456 152 QLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWG 231 (442)
Q Consensus 152 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~ 231 (442)
+.|+.|+|++|.|+.+-+++.-++.++.|+++.|.+..+-. +..+++|++||+++|.+...... -.++-+.++|.+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gw---h~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGW---HLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhh---HhhhcCEeeeeh
Confidence 34455555555555554444444555555555555544322 44455555555555544322111 122333344433
Q ss_pred cccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccccc
Q 013456 232 LSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY 287 (442)
Q Consensus 232 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 287 (442)
..+... ....++.+=+|..|++..|.+..-+....+++++.|+.+.+.+|....
T Consensus 360 a~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 333221 112344445666777777655433445567777888888877776544
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.68 E-value=1.1e-08 Score=69.29 Aligned_cols=57 Identities=33% Similarity=0.505 Sum_probs=34.8
Q ss_pred ccceecccccccccCCc-cccccCCCcEEeecCccccccch-hhhcccccceeeecccc
Q 013456 153 LLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIH 209 (442)
Q Consensus 153 ~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 209 (442)
+|++|++++|.+..+|. .+.++++|++|++++|.++.++. .+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 56666666666666653 45666666666666666665543 45566666666666654
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.67 E-value=2e-08 Score=67.97 Aligned_cols=59 Identities=27% Similarity=0.429 Sum_probs=49.6
Q ss_pred ceeEEEecCCCCCCCChh-hhhcccccceecccccccccCC-ccccccCCCcEEeecCccc
Q 013456 129 RLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNI 187 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l 187 (442)
|+|++|++++|.+..+|. .|..+++|++|++++|.+..+| ..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 468899999888888875 6788999999999999888884 4678899999999998864
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=8.1e-08 Score=96.68 Aligned_cols=85 Identities=34% Similarity=0.487 Sum_probs=49.7
Q ss_pred eEEEecCCCCC-CCChhhhhcccccceecccccccc-cCCccccccCCCcEEeecCcccc-ccchhhhcccccceeeecc
Q 013456 131 LRVLDLEDVYK-PVLPETIGKLQLLRYVGLRRTFID-SIPKSLGDLHSLETLDMKHTNIT-SLPKSIWKVKTLRHLYLND 207 (442)
Q Consensus 131 L~~L~l~~~~~-~~l~~~l~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~ 207 (442)
++.|+|+++.+ +.+|..++.+++|++|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55566665543 345555666666666666665553 45555666666666666666655 5566666666666666666
Q ss_pred cccccccc
Q 013456 208 IHLQMSVQ 215 (442)
Q Consensus 208 ~~~~~~~~ 215 (442)
|.+.+.+|
T Consensus 500 N~l~g~iP 507 (623)
T PLN03150 500 NSLSGRVP 507 (623)
T ss_pred CcccccCC
Confidence 65555444
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.58 E-value=6e-09 Score=88.88 Aligned_cols=246 Identities=19% Similarity=0.129 Sum_probs=141.2
Q ss_pred cCceeEEEecCCCCCCC-----Chhhhhcccccceecccccccc----cCCc-------cccccCCCcEEeecCcccc-c
Q 013456 127 GYRLLRVLDLEDVYKPV-----LPETIGKLQLLRYVGLRRTFID----SIPK-------SLGDLHSLETLDMKHTNIT-S 189 (442)
Q Consensus 127 ~~~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~L~~~~i~----~lp~-------~~~~l~~L~~L~L~~~~l~-~ 189 (442)
.+..+..++||||.++. +...+.+-.+|+..+++.-..+ .+|+ .+-+|++|++.+|+.|-+. +
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 47889999999987754 3445666788888888874332 2333 3457788888888888555 3
Q ss_pred cch----hhhcccccceeeeccccccccccCCCCCCCC-cccccccccccCCCCCchhhhccccCcceeeEEeeccccch
Q 013456 190 LPK----SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSL-TNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGK 264 (442)
Q Consensus 190 lp~----~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 264 (442)
.|. .|.+-+.|+||.+.+|.+- |.. -+.. +.|.+|- .......-|.|+......|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG---p~a--G~rigkal~~la---------~nKKaa~kp~Le~vicgrN------ 167 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG---PIA--GGRIGKALFHLA---------YNKKAADKPKLEVVICGRN------ 167 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC---ccc--hhHHHHHHHHHH---------HHhhhccCCCceEEEeccc------
Confidence 333 4556677888888877543 211 0111 1122111 0111233344444444444
Q ss_pred hHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCccccc-------CCCceeEEEEeccCCCC
Q 013456 265 ITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHE-------LPPNLRIFTLSLSYLSE 337 (442)
Q Consensus 265 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~ 337 (442)
+...++.......+....+|+.+.+..+...|..+.. ++.+|+.|++++|.++.
T Consensus 168 -------------------Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 168 -------------------RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred -------------------hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 4433333322222333344555555444332322111 13789999999998775
Q ss_pred CC----cccccCCCCCcEEEeCcccccCccccc-----CCCCCCcccEEEecccCCcceE-------EeCCCccccccEE
Q 013456 338 DP----MPVLGQLRELKALRLFAHSYIGEKMTC-----GNGGFPQLRVLKLWVLKELKEW-------TIEEGAMTALEKL 401 (442)
Q Consensus 338 ~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~l~~~-------~~~~~~~~~L~~L 401 (442)
.. ...+..++.|+.|.+.+|-++...... .-..+|+|..|...++..-..+ .+..+++|-|..|
T Consensus 229 ~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~l 308 (388)
T COG5238 229 EGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDL 308 (388)
T ss_pred hhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHH
Confidence 32 234566788999999998776554332 1235788888888776432221 1234678888888
Q ss_pred EeccCCCCCC
Q 013456 402 EIRNCPKLKM 411 (442)
Q Consensus 402 ~l~~c~~l~~ 411 (442)
.+.+|++.+.
T Consensus 309 e~ngNr~~E~ 318 (388)
T COG5238 309 ERNGNRIKEL 318 (388)
T ss_pred HHccCcchhH
Confidence 8888877653
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=1e-08 Score=98.61 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=39.1
Q ss_pred hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456 126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL 205 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 205 (442)
..+++|..|++.++.+..+...+..+++|++|++++|.|..+. .+..+..|+.|++++|.++.+. .+..++.|+.+++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhhhcccC
Confidence 3345555555555554444333444555555555555554442 2444444555555555444332 1222444555555
Q ss_pred cccccc
Q 013456 206 NDIHLQ 211 (442)
Q Consensus 206 ~~~~~~ 211 (442)
++|.+.
T Consensus 170 ~~n~i~ 175 (414)
T KOG0531|consen 170 SYNRIV 175 (414)
T ss_pred Ccchhh
Confidence 554443
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.53 E-value=6.5e-09 Score=93.91 Aligned_cols=295 Identities=18% Similarity=0.113 Sum_probs=174.7
Q ss_pred ceeEEEecCCCCCC---CChhhhhcccccceecccccc-cccC-Cccc-cccCCCcEEeecCc-cccc--cchhhhcccc
Q 013456 129 RLLRVLDLEDVYKP---VLPETIGKLQLLRYVGLRRTF-IDSI-PKSL-GDLHSLETLDMKHT-NITS--LPKSIWKVKT 199 (442)
Q Consensus 129 ~~L~~L~l~~~~~~---~l~~~l~~l~~L~~L~L~~~~-i~~l-p~~~-~~l~~L~~L~L~~~-~l~~--lp~~i~~l~~ 199 (442)
..||.|.+.|+.-. .+-....++++++.|++.++. +++- -.++ ..+++|++|++..| .++. +-.-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 45788888877432 233345678888888888864 3221 1122 45788888888886 5552 2223446888
Q ss_pred cceeeeccccccccccCCCCCCCCcccccccccccCCCCC--chhhhccccCcceeeEEee-ccccchhHHhhcCCcccc
Q 013456 200 LRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSP--PLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLE 276 (442)
Q Consensus 200 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~l~~l~~L~ 276 (442)
|++|+++.|.-...-........+++++.+...+|...+. +...-+.+.-+.++++..+ ..+...+...-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 8888888875432211111234555566665554433221 1111123334555554433 333334444445678889
Q ss_pred cceeeccccccCCccccccccCCcCCCceEEeccccC----CCcccccCCCceeEEEEeccCCCCC--CcccccCCCCCc
Q 013456 277 SLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLP----GPLKLHELPPNLRIFTLSLSYLSED--PMPVLGQLRELK 350 (442)
Q Consensus 277 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~ 350 (442)
.|..+++...+ ....+.--..+.+|+.+.+.++.. ....++.-.+.|+.+++..+....+ +...-.+++.|+
T Consensus 298 ~l~~s~~t~~~--d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 298 VLCYSSCTDIT--DEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhcccCCCCCc--hHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 99888776532 222223334578899999988742 1233444457899999988754322 222234588999
Q ss_pred EEEeCcccccCcc----cccCCCCCCcccEEEecccCCcceEE-eCCCccccccEEEeccCCCCCC---CccCCCCCCCc
Q 013456 351 ALRLFAHSYIGEK----MTCGNGGFPQLRVLKLWVLKELKEWT-IEEGAMTALEKLEIRNCPKLKM---PTELTKLSNLK 422 (442)
Q Consensus 351 ~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~---p~~l~~l~~L~ 422 (442)
.+.++.|....+. ......+...|+.+.+.+|+.+++-. .....+++|+.+++.+|....- ...-.++|+++
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK 455 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence 9999988765433 12224567789999999998776532 2234678999999999987653 22235667666
Q ss_pred EEE
Q 013456 423 ELT 425 (442)
Q Consensus 423 ~L~ 425 (442)
...
T Consensus 456 v~a 458 (483)
T KOG4341|consen 456 VHA 458 (483)
T ss_pred ehh
Confidence 543
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=4.4e-08 Score=84.77 Aligned_cols=223 Identities=20% Similarity=0.122 Sum_probs=130.4
Q ss_pred ccceecccccccccCC--ccc-cccCCCcEEeecCcccc---ccchhhhcccccceeeeccccccccccCCCCCCCCccc
Q 013456 153 LLRYVGLRRTFIDSIP--KSL-GDLHSLETLDMKHTNIT---SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNL 226 (442)
Q Consensus 153 ~L~~L~L~~~~i~~lp--~~~-~~l~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 226 (442)
-++.|.+.++.|...- ..| ...+.++.|||.+|.|+ ++-.-+.+|+.|+.|+++.|.+... |+.++ +
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~------I~~lp-~ 118 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD------IKSLP-L 118 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc------cccCc-c
Confidence 3445666666554432 223 35688999999999887 4444566899999999999877543 33332 1
Q ss_pred ccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceE
Q 013456 227 RTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKEL 306 (442)
Q Consensus 227 ~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l 306 (442)
...+|+.|-+.++..........+..++.++.|.++.|+....-.+.... -.-.+.++++
T Consensus 119 -------------------p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~-e~~s~~v~tl 178 (418)
T KOG2982|consen 119 -------------------PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI-EDWSTEVLTL 178 (418)
T ss_pred -------------------cccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccc-cccchhhhhh
Confidence 12233444444333333334444455566666666665432211111000 0123455666
Q ss_pred EeccccC----CCcccccCCCceeEEEEeccCCCCC-CcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecc
Q 013456 307 YLLGRLP----GPLKLHELPPNLRIFTLSLSYLSED-PMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWV 381 (442)
Q Consensus 307 ~l~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 381 (442)
+..+|.. ....+.+.++++..+-+..|.+... .......+|.+-.|+|..+.+........+.+|+.|..|.+.+
T Consensus 179 h~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~ 258 (418)
T KOG2982|consen 179 HQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSE 258 (418)
T ss_pred hcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccC
Confidence 6655531 1112344458888888888866532 2334566777778888888776655555678899999999998
Q ss_pred cCCcceEEe------CCCccccccEEE
Q 013456 382 LKELKEWTI------EEGAMTALEKLE 402 (442)
Q Consensus 382 ~~~l~~~~~------~~~~~~~L~~L~ 402 (442)
++.+..+.. ..+.+++++.|+
T Consensus 259 ~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 259 NPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CcccccccCCcceEEEEeeccceEEec
Confidence 887765432 224456666664
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=8.4e-07 Score=89.45 Aligned_cols=107 Identities=19% Similarity=0.123 Sum_probs=90.3
Q ss_pred ceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEe
Q 013456 324 NLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEI 403 (442)
Q Consensus 324 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 403 (442)
.++.|+|++|.+.+.++..++.+++|+.|+|++|.+.+..+.. +..+++|+.|++++|.....++...+.+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3788999999999888999999999999999999988766654 788999999999998766678887889999999999
Q ss_pred ccCCCCCC-CccCCC-CCCCcEEEeccccc
Q 013456 404 RNCPKLKM-PTELTK-LSNLKELTLVKKVL 431 (442)
Q Consensus 404 ~~c~~l~~-p~~l~~-l~~L~~L~l~~n~l 431 (442)
++|..... |..+.. ..++..+++.+|..
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCcc
Confidence 99987755 877765 34677899998864
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.35 E-value=3.7e-07 Score=56.48 Aligned_cols=37 Identities=30% Similarity=0.483 Sum_probs=17.6
Q ss_pred ccceecccccccccCCccccccCCCcEEeecCccccc
Q 013456 153 LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITS 189 (442)
Q Consensus 153 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~ 189 (442)
+|++|++++|.|+++|..+++|++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4455555555555554445555555555555554443
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.28 E-value=3.6e-08 Score=95.18 Aligned_cols=126 Identities=25% Similarity=0.211 Sum_probs=67.3
Q ss_pred cceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccc
Q 013456 154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLS 233 (442)
Q Consensus 154 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~ 233 (442)
|.+-+.++|.+..+-+++.-++.|+.|||++|+++..- .+..|++|+|||+++|.+.. +|.- ....++ |+.|.+.+
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~-vp~l-~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRH-VPQL-SMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhcc-cccc-chhhhh-heeeeecc
Confidence 33344444444444445555666777777777666553 56666777777777766542 2210 122222 56665555
Q ss_pred cCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456 234 IGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND 285 (442)
Q Consensus 234 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 285 (442)
+... ....++++++|+.||+++|.+........+..+..|+.|.|.+|..
T Consensus 242 N~l~--tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALT--TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHH--hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 4432 2334566667777777766443222333344455666666666544
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.27 E-value=1.4e-07 Score=90.67 Aligned_cols=127 Identities=24% Similarity=0.209 Sum_probs=92.7
Q ss_pred CceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeecc
Q 013456 128 YRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLND 207 (442)
Q Consensus 128 ~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 207 (442)
+..++.+.+..+.+..+-..+..+++|++|++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++.+
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG 149 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc
Confidence 566677778877777765667888899999999998888866578889999999999988877 3466777799999999
Q ss_pred ccccccccCCCCCCCCcccccccccccCCCCCch-hhhccccCcceeeEEeecc
Q 013456 208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPL-NWLENLSDLKNLGLICNIA 260 (442)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 260 (442)
|.+.... .+..+++|+.+++.++....... . +..+.+++.+.+..|..
T Consensus 150 N~i~~~~----~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 150 NLISDIS----GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred Ccchhcc----CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 8876432 34557777777776666543332 2 45666777777776643
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.20 E-value=1.1e-06 Score=54.30 Aligned_cols=41 Identities=29% Similarity=0.452 Sum_probs=35.1
Q ss_pred ccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCC
Q 013456 396 TALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPE 436 (442)
Q Consensus 396 ~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~ 436 (442)
++|++|++++|.+..+|..+.++++|+.|++++|+++.+|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 57999999999988887779999999999999999998875
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.14 E-value=9.1e-07 Score=89.06 Aligned_cols=164 Identities=21% Similarity=0.213 Sum_probs=92.7
Q ss_pred hhhHHHHHHhhhcCceeEEEecCCCC--CCCChhhhhc-ccccceecccccccc--cCCccccccCCCcEEeecCccccc
Q 013456 115 FGNLLKMVIAIRGYRLLRVLDLEDVY--KPVLPETIGK-LQLLRYVGLRRTFID--SIPKSLGDLHSLETLDMKHTNITS 189 (442)
Q Consensus 115 ~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~l~~~l~~-l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~l~~ 189 (442)
+..+++.+..-..=.+|+.|+++|.. ...-|..++. ||.|+.|.+++-.+. +...-..++++|..||+++++++.
T Consensus 108 i~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n 187 (699)
T KOG3665|consen 108 IISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN 187 (699)
T ss_pred HHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC
Confidence 33444444433445678888887652 2333445554 678888887774332 222224567788888888887777
Q ss_pred cchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCc------hhhhccccCcceeeEEeeccccc
Q 013456 190 LPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPP------LNWLENLSDLKNLGLICNIASLG 263 (442)
Q Consensus 190 lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~------~~~l~~l~~L~~L~l~~~~~~~~ 263 (442)
+ .++++|++|+.|.+.+-.+....... .+.+|++|+.|++......... .+.-..+|+|+.||.+++.....
T Consensus 188 l-~GIS~LknLq~L~mrnLe~e~~~~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 188 L-SGISRLKNLQVLSMRNLEFESYQDLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred c-HHHhccccHHHHhccCCCCCchhhHH-HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 7 67777888887777765544322111 3556677777776655443221 11123467777777777655422
Q ss_pred hhHHhhcCCccccccee
Q 013456 264 KITNLIQGLTSLESLRL 280 (442)
Q Consensus 264 ~~~~~l~~l~~L~~L~l 280 (442)
.+...+...++|+.+..
T Consensus 266 ~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 266 ILEELLNSHPNLQQIAA 282 (699)
T ss_pred HHHHHHHhCccHhhhhh
Confidence 23333333445555443
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=1.1e-06 Score=76.42 Aligned_cols=84 Identities=21% Similarity=0.197 Sum_probs=64.1
Q ss_pred cCceeEEEecCCCCCCCCh---hhhhcccccceecccccccccCCccc-cccCCCcEEeecCcccc--ccchhhhccccc
Q 013456 127 GYRLLRVLDLEDVYKPVLP---ETIGKLQLLRYVGLRRTFIDSIPKSL-GDLHSLETLDMKHTNIT--SLPKSIWKVKTL 200 (442)
Q Consensus 127 ~~~~L~~L~l~~~~~~~l~---~~l~~l~~L~~L~L~~~~i~~lp~~~-~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L 200 (442)
.+..++.+||.+|.+..-. .-+.++++|++|+++.|.+......+ ..+.+|++|-|.++++. .....+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4788999999999876543 34567999999999998765443333 35788999999998766 556667788889
Q ss_pred ceeeeccccc
Q 013456 201 RHLYLNDIHL 210 (442)
Q Consensus 201 ~~L~l~~~~~ 210 (442)
+.|.++.|.+
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 9998888854
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=1.8e-05 Score=73.73 Aligned_cols=139 Identities=14% Similarity=0.110 Sum_probs=74.5
Q ss_pred hccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCC
Q 013456 244 LENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPP 323 (442)
Q Consensus 244 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 323 (442)
+..+.++..|+++.|. +..+|. -..+|+.|.+++|.......+ .+ ..+|+.|.+.++. .+..+|+
T Consensus 48 ~~~~~~l~~L~Is~c~--L~sLP~---LP~sLtsL~Lsnc~nLtsLP~----~L--P~nLe~L~Ls~Cs----~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCD--IESLPV---LPNELTEITIENCNNLTTLPG----SI--PEGLEKLTVCHCP----EISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCC--CcccCC---CCCCCcEEEccCCCCcccCCc----hh--hhhhhheEccCcc----ccccccc
Confidence 4556788888888773 345552 234688888877654332111 11 3577788877653 1345667
Q ss_pred ceeEEEEeccCCCCCCcccccCC-CCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEE
Q 013456 324 NLRIFTLSLSYLSEDPMPVLGQL-RELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLE 402 (442)
Q Consensus 324 ~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 402 (442)
+|+.|++..+... .+..+ ++|+.|.+.++...... .....-.++|++|.+++|..+. .+. +-.++|+.|+
T Consensus 113 sLe~L~L~~n~~~-----~L~~LPssLk~L~I~~~n~~~~~-~lp~~LPsSLk~L~Is~c~~i~-LP~--~LP~SLk~L~ 183 (426)
T PRK15386 113 SVRSLEIKGSATD-----SIKNVPNGLTSLSINSYNPENQA-RIDNLISPSLKTLSLTGCSNII-LPE--KLPESLQSIT 183 (426)
T ss_pred ccceEEeCCCCCc-----ccccCcchHhheecccccccccc-ccccccCCcccEEEecCCCccc-Ccc--cccccCcEEE
Confidence 7788877654432 12223 35666666433211000 0000112568888888776442 121 1225788888
Q ss_pred eccC
Q 013456 403 IRNC 406 (442)
Q Consensus 403 l~~c 406 (442)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 7665
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.02 E-value=3.4e-07 Score=88.65 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=48.4
Q ss_pred CceeEEEecCCCCCCCChhhhhcccccceecccccccccCCcc-ccccCCCcEEeecCccccccchhhhcccccceeeec
Q 013456 128 YRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS-LGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLN 206 (442)
Q Consensus 128 ~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 206 (442)
++.|+.|+|++|.+.+.. .+..|++|++|||++|.+..+|.- ...++ |+.|++++|.++++ .++.+|.+|+.||++
T Consensus 186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYGLDLS 262 (1096)
T ss_pred HHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhhccchh
Confidence 445555555555544442 444555555555555555444431 12222 55555555555544 334555555555555
Q ss_pred cccccccccCCCCCCCCcccccccccccC
Q 013456 207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIG 235 (442)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~ 235 (442)
+|-+.+..... .++.+..|..|.+.++.
T Consensus 263 yNll~~hseL~-pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 263 YNLLSEHSELE-PLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred Hhhhhcchhhh-HHHHHHHHHHHhhcCCc
Confidence 55444322211 23444444444444443
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.95 E-value=3e-06 Score=65.09 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=52.9
Q ss_pred hcCceeEEEecCCCCCCCChhhhhc-ccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceee
Q 013456 126 RGYRLLRVLDLEDVYKPVLPETIGK-LQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLY 204 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~l~~~l~~-l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 204 (442)
.+-..|+..+|++|.+.++|+.|.. ++-++.|++++|.+.++|..+..++.|+.|+++.|.+...|..+..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 4455666666666666666665543 346666666666666666666666666666666666666666666666666666
Q ss_pred eccccc
Q 013456 205 LNDIHL 210 (442)
Q Consensus 205 l~~~~~ 210 (442)
..+|..
T Consensus 130 s~~na~ 135 (177)
T KOG4579|consen 130 SPENAR 135 (177)
T ss_pred CCCCcc
Confidence 655543
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.93 E-value=1.3e-06 Score=75.01 Aligned_cols=240 Identities=18% Similarity=0.130 Sum_probs=129.4
Q ss_pred cccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCC----CC-------hhhhhcccccceeccccc
Q 013456 94 FEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKP----VL-------PETIGKLQLLRYVGLRRT 162 (442)
Q Consensus 94 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~l-------~~~l~~l~~L~~L~L~~~ 162 (442)
+..+.-+.++++..+....+.+.+. +.+-++|++.+++.-..+ .+ .+.+-.|++|+..+|+.|
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~------ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNV------IANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHH------HhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 5667777788876554332222222 244688888888854322 22 344567889999999998
Q ss_pred ccc-cCCc----cccccCCCcEEeecCccccccc-----hhhh---------cccccceeeeccccccccccCCCCCCCC
Q 013456 163 FID-SIPK----SLGDLHSLETLDMKHTNITSLP-----KSIW---------KVKTLRHLYLNDIHLQMSVQKPFVKPSL 223 (442)
Q Consensus 163 ~i~-~lp~----~~~~l~~L~~L~L~~~~l~~lp-----~~i~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~l 223 (442)
.++ ..|+ -++.-+.|.+|.+++|.+-.+. ..+. .-+.|+....+.|++.....
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~-------- 174 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK-------- 174 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH--------
Confidence 775 2333 3566788999999999766332 2222 22445555555544331100
Q ss_pred cccccccccccCCCCCchhhhccccCcceeeEEeeccccch----hHHhhcCCcccccceeeccccccCCccccccccCC
Q 013456 224 TNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGK----ITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNN 299 (442)
Q Consensus 224 ~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 299 (442)
......+....+|+.+.+..|.+.... ....+..+++|+.|++.+|..+.........+++.
T Consensus 175 --------------~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~ 240 (388)
T COG5238 175 --------------ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE 240 (388)
T ss_pred --------------HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence 012233444456777777766544221 11233456777777777766554333333344555
Q ss_pred cCCCceEEeccccCCCccc--------ccCCCceeEEEEeccCCCCCCccc-------ccCCCCCcEEEeCcccccC
Q 013456 300 HKELKELYLLGRLPGPLKL--------HELPPNLRIFTLSLSYLSEDPMPV-------LGQLRELKALRLFAHSYIG 361 (442)
Q Consensus 300 ~~~L~~l~l~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~-------l~~l~~L~~L~l~~~~~~~ 361 (442)
++.|+.|.+..|.-..... ..+.++|..|-+.+|.+.+..... -..+|-|..|.+.||.+..
T Consensus 241 W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 241 WNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred cchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 5666666665553211100 111356777777766554432111 1345666666666666543
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=3.8e-05 Score=71.61 Aligned_cols=73 Identities=25% Similarity=0.344 Sum_probs=54.0
Q ss_pred hcCceeEEEecCCCCCCCChhhhhcccccceecccc-cccccCCccccccCCCcEEeecCc-cccccchhhhccccccee
Q 013456 126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRR-TFIDSIPKSLGDLHSLETLDMKHT-NITSLPKSIWKVKTLRHL 203 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~-~~i~~lp~~~~~l~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L 203 (442)
..+++++.|++++|.+..+|. + ..+|+.|.+++ +.+..+|+.+ ..+|++|++++| .+..+|.. |+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceE
Confidence 446889999999998888872 2 23699999988 4567777665 368999999998 77777754 5666
Q ss_pred eecccc
Q 013456 204 YLNDIH 209 (442)
Q Consensus 204 ~l~~~~ 209 (442)
++..+.
T Consensus 118 ~L~~n~ 123 (426)
T PRK15386 118 EIKGSA 123 (426)
T ss_pred EeCCCC
Confidence 665543
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.84 E-value=2e-06 Score=66.09 Aligned_cols=102 Identities=22% Similarity=0.270 Sum_probs=79.5
Q ss_pred CceeEEEecCCCCCCCChh---hhhcccccceecccccccccCCcccc-ccCCCcEEeecCccccccchhhhccccccee
Q 013456 128 YRLLRVLDLEDVYKPVLPE---TIGKLQLLRYVGLRRTFIDSIPKSLG-DLHSLETLDMKHTNITSLPKSIWKVKTLRHL 203 (442)
Q Consensus 128 ~~~L~~L~l~~~~~~~l~~---~l~~l~~L~~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 203 (442)
-..+..++|+.|.+..+++ .+....+|...+|++|.++..|+.+. +.+.+++|++++|.++++|..+..++.|+.|
T Consensus 26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred HHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 4557788999997765554 45566788888999999999998884 5568999999999999999999999999999
Q ss_pred eeccccccccccCCCCCCCCccccccccc
Q 013456 204 YLNDIHLQMSVQKPFVKPSLTNLRTLWGL 232 (442)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~l~~L~~L~~~ 232 (442)
+++.|.+... |. .+..+.++..|+..
T Consensus 106 Nl~~N~l~~~-p~--vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 106 NLRFNPLNAE-PR--VIAPLIKLDMLDSP 131 (177)
T ss_pred ccccCccccc-hH--HHHHHHhHHHhcCC
Confidence 9999987633 22 24445555555533
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=2.6e-05 Score=78.77 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=65.3
Q ss_pred ccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccC--C
Q 013456 91 KKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSI--P 168 (442)
Q Consensus 91 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l--p 168 (442)
..-+|.||+|.+.+.... .+.|..+ ..+||+|+.||+|++.+..+ ..++++++|+.|.+++-.+..- -
T Consensus 144 g~~LPsL~sL~i~~~~~~---~~dF~~l------c~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l 213 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQFD---NDDFSQL------CASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDL 213 (699)
T ss_pred hhhCcccceEEecCceec---chhHHHH------hhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhH
Confidence 344677777777664321 1113332 24577777777777777666 6677777777777776444322 1
Q ss_pred ccccccCCCcEEeecCccccccchhh-------hcccccceeeeccccccc
Q 013456 169 KSLGDLHSLETLDMKHTNITSLPKSI-------WKVKTLRHLYLNDIHLQM 212 (442)
Q Consensus 169 ~~~~~l~~L~~L~L~~~~l~~lp~~i-------~~l~~L~~L~l~~~~~~~ 212 (442)
..+.+|++|++||+|.......+..+ ..|++||.||.+++.+..
T Consensus 214 ~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 214 IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 23566777777777776433222111 136777777777665543
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.52 E-value=0.00012 Score=60.41 Aligned_cols=102 Identities=21% Similarity=0.171 Sum_probs=45.9
Q ss_pred ccceecccccccccCCccccccCCCcEEeecCccccccchhhhc-ccccceeeeccccccccccCCCCCCCCcccccccc
Q 013456 153 LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWK-VKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWG 231 (442)
Q Consensus 153 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~-l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~ 231 (442)
....++|++|.+..++ .+..+..|.+|.+.+|+|+.+-..+.. +++|+.|.+.+|.+....... .+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-PLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-hhccCCccceeee
Confidence 3444555555554443 244555555555555555555444443 344555555555443222111 2334444444444
Q ss_pred cccCCCC---CchhhhccccCcceeeEE
Q 013456 232 LSIGKKS---PPLNWLENLSDLKNLGLI 256 (442)
Q Consensus 232 ~~~~~~~---~~~~~l~~l~~L~~L~l~ 256 (442)
.++.... .-...+..+++|+.||+.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehh
Confidence 4333211 011123445555555554
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.50 E-value=7.6e-06 Score=80.79 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=17.6
Q ss_pred ccCcceeeEEeec-cccchhHHhhcCCcccccceeecccc
Q 013456 247 LSDLKNLGLICNI-ASLGKITNLIQGLTSLESLRLRSIND 285 (442)
Q Consensus 247 l~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~ 285 (442)
+++|+.|.+..+. .+...+......+++|+.|++++|..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4455555544333 23233444444445555555554443
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=1.5e-05 Score=68.84 Aligned_cols=103 Identities=21% Similarity=0.208 Sum_probs=72.2
Q ss_pred cCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccc--hhhhcccccceee
Q 013456 127 GYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLP--KSIWKVKTLRHLY 204 (442)
Q Consensus 127 ~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~ 204 (442)
.+.+.+.|++.||.+..+. ....++.|++|.|+-|.|..+. .+..+++|+.|+|+.|.|..+- ..+.++++|+.|+
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3567788888888877663 3456888888888888888773 4778888888888888877553 3466888889998
Q ss_pred eccccccccccC---CCCCCCCcccccccc
Q 013456 205 LNDIHLQMSVQK---PFVKPSLTNLRTLWG 231 (442)
Q Consensus 205 l~~~~~~~~~~~---~~~~~~l~~L~~L~~ 231 (442)
+..|...+..+. ...+.-+++|+.|+-
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccC
Confidence 888766543221 012445666666653
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.00021 Score=61.53 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=51.3
Q ss_pred hhcccccceecccccccccCCccccccCCCcEEeecCc--ccc-ccchhhhcccccceeeeccccccccccCCCCCCCCc
Q 013456 148 IGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHT--NIT-SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLT 224 (442)
Q Consensus 148 l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~--~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 224 (442)
.-.+..|++|++.+..++.+ ..+-.|++|++|.++.| ++. .++.-...+++|++|++++|++...-... .+..+.
T Consensus 39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELE 116 (260)
T ss_pred cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhc
Confidence 33455666666666544433 23445778888888888 454 56655666788888888888775311111 234455
Q ss_pred ccccccccccC
Q 013456 225 NLRTLWGLSIG 235 (442)
Q Consensus 225 ~L~~L~~~~~~ 235 (442)
+|..|+++.|.
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 55555555443
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.04 E-value=0.0013 Score=54.37 Aligned_cols=83 Identities=18% Similarity=0.081 Sum_probs=42.8
Q ss_pred CceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcce---EEeCCCcccccc
Q 013456 323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKE---WTIEEGAMTALE 399 (442)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---~~~~~~~~~~L~ 399 (442)
+.|.+|.+.+|+++...+..-..+|+|..|.+.+|.+........+..+|+|+.|.+-+++.-.. -......+|+|+
T Consensus 64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~ 143 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLR 143 (233)
T ss_pred cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcce
Confidence 56666666666666444444444566666666666554433333455666666666666542211 011112356666
Q ss_pred EEEecc
Q 013456 400 KLEIRN 405 (442)
Q Consensus 400 ~L~l~~ 405 (442)
.|++.+
T Consensus 144 ~LDF~k 149 (233)
T KOG1644|consen 144 TLDFQK 149 (233)
T ss_pred Eeehhh
Confidence 666543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=7.8e-05 Score=64.53 Aligned_cols=104 Identities=23% Similarity=0.266 Sum_probs=75.6
Q ss_pred cccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccc
Q 013456 150 KLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTL 229 (442)
Q Consensus 150 ~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 229 (442)
.+.+.+.|+..|+.+.++. ...+++.|++|.|+-|.|+.+ ..+..|++|+.|++..|.+...-... -+.++++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~-YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELE-YLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHH-HHhcCchhhhH
Confidence 4667788899999888772 357899999999999999988 45788999999999999876433221 25677788888
Q ss_pred cccccCCCCCc-----hhhhccccCcceeeEE
Q 013456 230 WGLSIGKKSPP-----LNWLENLSDLKNLGLI 256 (442)
Q Consensus 230 ~~~~~~~~~~~-----~~~l~~l~~L~~L~l~ 256 (442)
.+..+.-.+.. ...+.-+++|++||-.
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 77666544322 2235667777777643
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.59 E-value=0.0011 Score=33.93 Aligned_cols=18 Identities=50% Similarity=0.767 Sum_probs=9.6
Q ss_pred CcEEeecCccccccchhh
Q 013456 177 LETLDMKHTNITSLPKSI 194 (442)
Q Consensus 177 L~~L~L~~~~l~~lp~~i 194 (442)
|++||+++|+++.+|..+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555543
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.58 E-value=0.00033 Score=69.10 Aligned_cols=237 Identities=21% Similarity=0.169 Sum_probs=129.7
Q ss_pred cccccceeccccc-cccc--CCccccccCCCcEEeecCc--ccccc----chhhhcccccceeeeccccccccccCCCCC
Q 013456 150 KLQLLRYVGLRRT-FIDS--IPKSLGDLHSLETLDMKHT--NITSL----PKSIWKVKTLRHLYLNDIHLQMSVQKPFVK 220 (442)
Q Consensus 150 ~l~~L~~L~L~~~-~i~~--lp~~~~~l~~L~~L~L~~~--~l~~l----p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 220 (442)
.++.|+.|.+.++ .+.. +-.....+++|+.|+++++ .+... ......+.+|++|+++++............
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4678888888875 3443 3234567788888888873 22211 223345688888988887743222222122
Q ss_pred CCCcccccccccccCC-C-CCchhhhccccCcceeeEEeeccc-cchhHHhhcCCcccccceeeccccccCCcccccccc
Q 013456 221 PSLTNLRTLWGLSIGK-K-SPPLNWLENLSDLKNLGLICNIAS-LGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSL 297 (442)
Q Consensus 221 ~~l~~L~~L~~~~~~~-~-~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 297 (442)
..+++|+.|.+..+.. . ..+......+++|++|+++.+... ...+.....++++++.|.+.....
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------------ 333 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG------------ 333 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC------------
Confidence 3377888888666663 2 344455667888999999987543 233444455677777766544221
Q ss_pred CCcCCCceEEeccccC-----CCcccccCCCceeEEEEeccCCCCCC-cccccCCCCCcEEEeCcccccCcccccCCCCC
Q 013456 298 NNHKELKELYLLGRLP-----GPLKLHELPPNLRIFTLSLSYLSEDP-MPVLGQLRELKALRLFAHSYIGEKMTCGNGGF 371 (442)
Q Consensus 298 ~~~~~L~~l~l~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 371 (442)
+..++.+.+.+... ........+++++.+.+..+...... ...+..+++|+ ..+..+ ...+
T Consensus 334 --c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~----------~~~~ 400 (482)
T KOG1947|consen 334 --CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR----------LCRS 400 (482)
T ss_pred --CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH----------hccC
Confidence 23333333332211 01112223467777777777643322 23445555552 222111 1223
Q ss_pred CcccEEEecccCCcceEEeCC--CccccccEEEeccCCCCCC
Q 013456 372 PQLRVLKLWVLKELKEWTIEE--GAMTALEKLEIRNCPKLKM 411 (442)
Q Consensus 372 ~~L~~L~l~~~~~l~~~~~~~--~~~~~L~~L~l~~c~~l~~ 411 (442)
..++.|.+..|...+.-.... ..+..++.+++.+|.....
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred CccceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 337788887776544321111 1166677788888776654
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.37 E-value=0.0018 Score=55.89 Aligned_cols=104 Identities=22% Similarity=0.250 Sum_probs=60.5
Q ss_pred CceeEEEEeccCCCCCCcccccCCCCCcEEEeCccc--ccCcccccCCCCCCcccEEEecccCCcceEE--eCCCccccc
Q 013456 323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHS--YIGEKMTCGNGGFPQLRVLKLWVLKELKEWT--IEEGAMTAL 398 (442)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~L 398 (442)
..|+.+++.++.++. ...+-.+|+|++|.++.|. .... +......+|+|++|.+++|. ++.+. .....+++|
T Consensus 43 ~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~-l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGG-LEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENL 118 (260)
T ss_pred cchhhhhhhccceee--cccCCCcchhhhhcccCCccccccc-ceehhhhCCceeEEeecCCc-cccccccchhhhhcch
Confidence 466666666666552 2244557788888888883 3322 22224455888888888864 22211 122456778
Q ss_pred cEEEeccCCCCCC----CccCCCCCCCcEEEecccc
Q 013456 399 EKLEIRNCPKLKM----PTELTKLSNLKELTLVKKV 430 (442)
Q Consensus 399 ~~L~l~~c~~l~~----p~~l~~l~~L~~L~l~~n~ 430 (442)
..|++.+|.-... -..+.-+++|+.|+-....
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 8888888876654 1123446666666544433
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.36 E-value=0.0012 Score=33.88 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=14.4
Q ss_pred ccceecccccccccCCccccc
Q 013456 153 LLRYVGLRRTFIDSIPKSLGD 173 (442)
Q Consensus 153 ~L~~L~L~~~~i~~lp~~~~~ 173 (442)
+|++|++++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766554
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.33 E-value=0.0025 Score=30.27 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=10.4
Q ss_pred CCCcEEEeccccccccC
Q 013456 419 SNLKELTLVKKVLKMKP 435 (442)
Q Consensus 419 ~~L~~L~l~~n~l~~~p 435 (442)
++|++|+|++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 46888888888888776
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.05 E-value=0.0004 Score=58.66 Aligned_cols=86 Identities=19% Similarity=0.153 Sum_probs=73.2
Q ss_pred hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456 126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL 205 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 205 (442)
..++..++||++.+....+-.-++-++.|..|+++-|.+..+|++++.+..+..+++..|+.+..|...++.+++++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 34788899999988777777777888889999999888888999998888999999998888899999999999999988
Q ss_pred cccccc
Q 013456 206 NDIHLQ 211 (442)
Q Consensus 206 ~~~~~~ 211 (442)
.++.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 887653
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.63 E-value=0.0066 Score=32.55 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.3
Q ss_pred CCCCcEEEeccccccccCCCCCC
Q 013456 418 LSNLKELTLVKKVLKMKPEDAWP 440 (442)
Q Consensus 418 l~~L~~L~l~~n~l~~~p~~~~~ 440 (442)
+++|+.|++++|.|+.+|+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46899999999999999998775
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.63 E-value=0.0066 Score=32.55 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.3
Q ss_pred CCCCcEEEeccccccccCCCCCC
Q 013456 418 LSNLKELTLVKKVLKMKPEDAWP 440 (442)
Q Consensus 418 l~~L~~L~l~~n~l~~~p~~~~~ 440 (442)
+++|+.|++++|.|+.+|+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46899999999999999998775
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.61 E-value=0.0086 Score=28.39 Aligned_cols=16 Identities=50% Similarity=0.843 Sum_probs=7.0
Q ss_pred CCcEEeecCccccccc
Q 013456 176 SLETLDMKHTNITSLP 191 (442)
Q Consensus 176 ~L~~L~L~~~~l~~lp 191 (442)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666555544
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.0011 Score=55.00 Aligned_cols=85 Identities=20% Similarity=0.198 Sum_probs=53.6
Q ss_pred ceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcc-cccCCCCCCcccEEEecccCCcceEE-eCCCccccccEE
Q 013456 324 NLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEK-MTCGNGGFPQLRVLKLWVLKELKEWT-IEEGAMTALEKL 401 (442)
Q Consensus 324 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L 401 (442)
.++.++-+++.+..+....+..++.++.|.+.+|...+.. .....+..++|+.|++++|+.+++-- .....+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 5677777777776666667777788888888777654432 22222357777888888777665421 122356777777
Q ss_pred EeccCCC
Q 013456 402 EIRNCPK 408 (442)
Q Consensus 402 ~l~~c~~ 408 (442)
.|.+-+.
T Consensus 182 ~l~~l~~ 188 (221)
T KOG3864|consen 182 HLYDLPY 188 (221)
T ss_pred HhcCchh
Confidence 7766543
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.99 E-value=0.059 Score=42.28 Aligned_cols=79 Identities=14% Similarity=0.266 Sum_probs=37.5
Q ss_pred hcCceeEEEecCCCCCCCChh-hhhcccccceecccccccccCCc-cccccCCCcEEeecCccccccchh-hhcccccce
Q 013456 126 RGYRLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRH 202 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~ 202 (442)
.++++|+.+.+.. .+..++. .|.+++.|+.+.+..+ +..++. .+..+..|+.+.+.. .+..++.. +..+++|+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 4466667666664 3444433 4666667777777653 555533 355666677777754 44444333 334677777
Q ss_pred eeecc
Q 013456 203 LYLND 207 (442)
Q Consensus 203 L~l~~ 207 (442)
+.+..
T Consensus 86 i~~~~ 90 (129)
T PF13306_consen 86 IDIPS 90 (129)
T ss_dssp EEETT
T ss_pred cccCc
Confidence 77654
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.98 E-value=0.098 Score=40.99 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=41.7
Q ss_pred CceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEe-CCCccccccEE
Q 013456 323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTI-EEGAMTALEKL 401 (442)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L 401 (442)
.+|+.+.+.. .+.......|..+++|+.+.+.++ +. ......+..+++|+.+.+.+ .+..+.. ....+++|+.+
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc--ccccccccccccccccccc
Confidence 3445555432 222222334555666666666543 22 22233355565666666643 2223322 22345666666
Q ss_pred EeccCCCCCC-CccCCCCCCCcEEEeccccccccCCCCC
Q 013456 402 EIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPEDAW 439 (442)
Q Consensus 402 ~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~~~ 439 (442)
.+... ...+ ...+.++ +|+.+.+.. .+..+++..|
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F 122 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAF 122 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GG
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccc
Confidence 66543 2333 4455555 666666665 5555555444
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.58 E-value=0.062 Score=28.64 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=12.6
Q ss_pred CCCcEEeecCccccccchhh
Q 013456 175 HSLETLDMKHTNITSLPKSI 194 (442)
Q Consensus 175 ~~L~~L~L~~~~l~~lp~~i 194 (442)
++|++|+|++|.++.+|...
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666666554
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.58 E-value=0.062 Score=28.64 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=12.6
Q ss_pred CCCcEEeecCccccccchhh
Q 013456 175 HSLETLDMKHTNITSLPKSI 194 (442)
Q Consensus 175 ~~L~~L~L~~~~l~~lp~~i 194 (442)
++|++|+|++|.++.+|...
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666666554
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.23 E-value=0.0069 Score=50.29 Aligned_cols=37 Identities=24% Similarity=0.172 Sum_probs=17.2
Q ss_pred CCCcEEEeCcccccCcccccCCCCCCcccEEEecccC
Q 013456 347 RELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLK 383 (442)
Q Consensus 347 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 383 (442)
++|+.|+|++|.-.++.....+..+++|+.|.+.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 4555555555543332222224445555555555433
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.87 E-value=0.14 Score=27.19 Aligned_cols=19 Identities=37% Similarity=0.445 Sum_probs=16.7
Q ss_pred CCCcEEEeccccccccCCC
Q 013456 419 SNLKELTLVKKVLKMKPED 437 (442)
Q Consensus 419 ~~L~~L~l~~n~l~~~p~~ 437 (442)
++|+.|++++|+++.+|+-
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLTSLPEL 20 (26)
T ss_pred cccceeecCCCccccCccc
Confidence 4689999999999999984
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.50 E-value=0.032 Score=47.55 Aligned_cols=63 Identities=17% Similarity=0.059 Sum_probs=57.8
Q ss_pred hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCcccc
Q 013456 126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNIT 188 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~ 188 (442)
+.++.|..|+++.+.+..+|..++.+..++.+++..|.....|.+++..++++++++.++.+.
T Consensus 62 s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 62 SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcch
Confidence 446788899999999999999999999999999999999999999999999999999998765
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.41 E-value=0.0073 Score=58.67 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=7.5
Q ss_pred cccEEEeccCCCCC
Q 013456 397 ALEKLEIRNCPKLK 410 (442)
Q Consensus 397 ~L~~L~l~~c~~l~ 410 (442)
.++.+.++.+++..
T Consensus 433 ~~~~~~l~~~~~~~ 446 (478)
T KOG4308|consen 433 SLKALRLSRNPITA 446 (478)
T ss_pred cchhhhhccChhhh
Confidence 55555555555443
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.73 E-value=0.73 Score=24.55 Aligned_cols=19 Identities=37% Similarity=0.503 Sum_probs=14.9
Q ss_pred CCCCcEEEeccccccccCC
Q 013456 418 LSNLKELTLVKKVLKMKPE 436 (442)
Q Consensus 418 l~~L~~L~l~~n~l~~~p~ 436 (442)
+.+|++|++++|+|+.+..
T Consensus 1 L~~L~~L~L~~NkI~~IEn 19 (26)
T smart00365 1 LTNLEELDLSQNKIKKIEN 19 (26)
T ss_pred CCccCEEECCCCccceecC
Confidence 4678899999998877754
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.62 E-value=0.6 Score=24.16 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=8.9
Q ss_pred CCCCcEEEecccccc
Q 013456 418 LSNLKELTLVKKVLK 432 (442)
Q Consensus 418 l~~L~~L~l~~n~l~ 432 (442)
+++|++|+|++|+|+
T Consensus 1 ~~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNNQIT 15 (24)
T ss_dssp -TT-SEEE-TSSBEH
T ss_pred CCCCCEEEccCCcCC
Confidence 367788888888764
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=78.84 E-value=0.079 Score=51.64 Aligned_cols=41 Identities=17% Similarity=0.100 Sum_probs=19.5
Q ss_pred CccccccEEEeccCCCCCC-Cc-----cCCCCCCCcEEEecccccccc
Q 013456 393 GAMTALEKLEIRNCPKLKM-PT-----ELTKLSNLKELTLVKKVLKMK 434 (442)
Q Consensus 393 ~~~~~L~~L~l~~c~~l~~-p~-----~l~~l~~L~~L~l~~n~l~~~ 434 (442)
...+.++.++++.|..... +. .-.+. .++.+.++.|.++..
T Consensus 401 ~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~ 447 (478)
T KOG4308|consen 401 ASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITAL 447 (478)
T ss_pred hhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhc
Confidence 3445556665555443322 11 11233 566666666665444
No 88
>PF14162 YozD: YozD-like protein
Probab=75.43 E-value=2.7 Score=26.14 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHcCeEEE
Q 013456 3 PEDQAKKDFHQLVLMNMIEV 22 (442)
Q Consensus 3 ~ed~~~~~~~~Lv~r~li~~ 22 (442)
.|++|+-.|.+|+.||++-.
T Consensus 10 TEEIAefFy~eL~kRGyvP~ 29 (57)
T PF14162_consen 10 TEEIAEFFYHELVKRGYVPT 29 (57)
T ss_pred HHHHHHHHHHHHHHccCCCc
Confidence 48999999999999999853
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=74.51 E-value=2.1 Score=22.65 Aligned_cols=16 Identities=19% Similarity=0.615 Sum_probs=9.4
Q ss_pred cccccEEEeccCCCCC
Q 013456 395 MTALEKLEIRNCPKLK 410 (442)
Q Consensus 395 ~~~L~~L~l~~c~~l~ 410 (442)
+|+|+.|++++|...+
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3556666666665443
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=63.32 E-value=5.2 Score=21.62 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=10.6
Q ss_pred CCCcEEEecccccc
Q 013456 419 SNLKELTLVKKVLK 432 (442)
Q Consensus 419 ~~L~~L~l~~n~l~ 432 (442)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46888888888774
No 91
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=60.29 E-value=17 Score=22.07 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=13.6
Q ss_pred CCceEEeccccCCCcccccCCCceeEEEEe
Q 013456 302 ELKELYLLGRLPGPLKLHELPPNLRIFTLS 331 (442)
Q Consensus 302 ~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~ 331 (442)
++++|.+.+....+.....+|++|++|.+.
T Consensus 13 ~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 13 SLKSLIFGSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CCeEEEECCccCccCCCCccCCCceEEEee
Confidence 444444433333333344445555555543
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.62 E-value=2.7 Score=40.90 Aligned_cols=79 Identities=16% Similarity=0.045 Sum_probs=47.2
Q ss_pred CceeEEEEeccCCCC--CCcccccCCCCCcEEEeCcc--cccCcccccCCCCCCcccEEEecccCCcceEE-------eC
Q 013456 323 PNLRIFTLSLSYLSE--DPMPVLGQLRELKALRLFAH--SYIGEKMTCGNGGFPQLRVLKLWVLKELKEWT-------IE 391 (442)
Q Consensus 323 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-------~~ 391 (442)
+.+.++.|++|++.. .....-...|+|+.|+|++| .+.. .....--+...|++|.+.||+.-+... ..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-ESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-hhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHH
Confidence 678888888887753 22222344688888888888 3221 112122345667888888877544322 12
Q ss_pred CCccccccEEE
Q 013456 392 EGAMTALEKLE 402 (442)
Q Consensus 392 ~~~~~~L~~L~ 402 (442)
...||+|..|+
T Consensus 297 ~~~FPKL~~LD 307 (585)
T KOG3763|consen 297 RELFPKLLRLD 307 (585)
T ss_pred HHhcchheeec
Confidence 23577777776
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.26 E-value=7 Score=38.22 Aligned_cols=79 Identities=22% Similarity=0.185 Sum_probs=40.0
Q ss_pred cCCCceEEecccc----CCCcccccCCCceeEEEEeccCCCCCCcccccCC--CCCcEEEeCcccccCcccc------cC
Q 013456 300 HKELKELYLLGRL----PGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQL--RELKALRLFAHSYIGEKMT------CG 367 (442)
Q Consensus 300 ~~~L~~l~l~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~------~~ 367 (442)
.+.+..+.++.+- .....+....++|..|+|++|...-....++.++ ..|++|.+.||.+.+.... ..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHH
Confidence 4555555565542 1122233334678888888772211122233332 3577777777766542211 11
Q ss_pred CCCCCcccEEE
Q 013456 368 NGGFPQLRVLK 378 (442)
Q Consensus 368 ~~~~~~L~~L~ 378 (442)
...||+|..|+
T Consensus 297 ~~~FPKL~~LD 307 (585)
T KOG3763|consen 297 RELFPKLLRLD 307 (585)
T ss_pred HHhcchheeec
Confidence 23577777775
No 94
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=46.32 E-value=43 Score=24.50 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCeEEEEEecCCCceeEEEcChh
Q 013456 5 DQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSS 39 (442)
Q Consensus 5 d~~~~~~~~Lv~r~li~~~~~~~~~~~~~~~mhdl 39 (442)
.+|+.|+++|++++++...+. |+.+.|..=+-
T Consensus 46 ~~~~~yi~~L~~~Gli~~~~~---~~~~~y~lT~K 77 (95)
T COG3432 46 KRAQKYIEMLVEKGLIIKQDN---GRRKVYELTEK 77 (95)
T ss_pred HHHHHHHHHHHhCCCEEeccC---CccceEEEChh
Confidence 579999999999998876543 43344555443
No 95
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=45.33 E-value=53 Score=21.80 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCeEEEEEecCCCceeEEE
Q 013456 7 AKKDFHQLVLMNMIEVVKLKSDGRPKTCR 35 (442)
Q Consensus 7 ~~~~~~~Lv~r~li~~~~~~~~~~~~~~~ 35 (442)
+.+.+++|+.+++++......+++...+.
T Consensus 35 vs~~i~~L~~~glv~~~~~~~d~R~~~~~ 63 (68)
T PF13463_consen 35 VSRIIKKLEEKGLVEKERDPHDKRSKRYR 63 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSCTTSEEEE
T ss_pred HHHHHHHHHHCCCEEecCCCCcCCeeEEE
Confidence 45789999999999988877777765554
No 96
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=20.76 E-value=71 Score=25.12 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHcCeE
Q 013456 3 PEDQAKKDFHQLVLMNMI 20 (442)
Q Consensus 3 ~ed~~~~~~~~Lv~r~li 20 (442)
.++.|..+|++||.+|--
T Consensus 33 ~~~EG~k~F~~LVk~Ge~ 50 (132)
T PF05597_consen 33 AQEEGSKVFEALVKEGEK 50 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468899999999998854
Done!