Query 013456
Match_columns 442
No_of_seqs 282 out of 3942
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 10:55:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013456.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013456hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 100.0 6.4E-32 2.2E-36 272.4 18.2 347 70-437 31-539 (606)
2 3rgz_A Protein brassinosteroid 100.0 5.9E-32 2E-36 279.0 16.1 301 127-436 341-722 (768)
3 3rgz_A Protein brassinosteroid 100.0 8.3E-32 2.8E-36 277.9 16.5 348 71-436 247-698 (768)
4 4eco_A Uncharacterized protein 100.0 4E-31 1.4E-35 266.8 19.0 342 70-437 205-605 (636)
5 2z7x_B TOLL-like receptor 1, v 100.0 8.4E-31 2.9E-35 259.3 20.8 139 298-439 321-464 (520)
6 2z63_A TOLL-like receptor 4, v 100.0 1.4E-30 4.8E-35 260.7 18.1 139 297-436 392-535 (570)
7 3t6q_A CD180 antigen; protein- 100.0 4E-30 1.4E-34 259.3 21.3 114 323-437 400-518 (606)
8 4fmz_A Internalin; leucine ric 100.0 5.9E-30 2E-34 239.9 20.8 307 91-433 40-347 (347)
9 3v47_A TOLL-like receptor 5B a 100.0 3E-30 1E-34 251.1 19.1 330 94-436 29-412 (455)
10 4eco_A Uncharacterized protein 100.0 8.6E-31 2.9E-35 264.4 15.6 335 88-439 199-586 (636)
11 2id5_A Lingo-1, leucine rich r 100.0 5.4E-30 1.9E-34 250.7 20.7 298 129-435 32-336 (477)
12 3t6q_A CD180 antigen; protein- 100.0 3.2E-30 1.1E-34 260.0 19.3 275 154-437 256-541 (606)
13 3v47_A TOLL-like receptor 5B a 100.0 1.2E-29 4.1E-34 246.8 22.5 323 69-411 28-410 (455)
14 4ecn_A Leucine-rich repeat pro 100.0 3.6E-30 1.2E-34 264.6 19.7 330 89-438 442-825 (876)
15 3o6n_A APL1; leucine-rich repe 100.0 6.5E-30 2.2E-34 243.5 20.1 308 92-433 42-353 (390)
16 4ecn_A Leucine-rich repeat pro 100.0 5.5E-30 1.9E-34 263.2 19.7 343 70-438 447-846 (876)
17 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-29 3.6E-34 259.6 21.8 132 70-211 24-158 (680)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.8E-29 9.5E-34 250.5 21.3 341 74-439 34-493 (562)
19 3vq2_A TLR4, TOLL-like recepto 100.0 6.5E-30 2.2E-34 257.7 16.8 133 95-238 32-167 (606)
20 3j0a_A TOLL-like receptor 5; m 100.0 5.2E-29 1.8E-33 259.6 22.7 134 69-212 22-162 (844)
21 1o6v_A Internalin A; bacterial 100.0 2E-28 6.8E-33 238.6 25.3 326 71-437 46-393 (466)
22 4fmz_A Internalin; leucine ric 100.0 8.7E-29 3E-33 232.0 20.3 286 126-436 41-328 (347)
23 2z81_A CD282 antigen, TOLL-lik 100.0 7.8E-29 2.7E-33 246.9 20.4 353 71-437 26-428 (549)
24 3o6n_A APL1; leucine-rich repe 100.0 7.2E-29 2.5E-33 236.3 19.1 293 127-439 43-338 (390)
25 3oja_B Anopheles plasmodium-re 100.0 6.5E-29 2.2E-33 249.2 19.7 308 92-433 48-359 (597)
26 2z63_A TOLL-like receptor 4, v 100.0 2E-29 6.7E-34 252.4 15.2 354 69-440 26-515 (570)
27 1o6v_A Internalin A; bacterial 100.0 4.3E-28 1.5E-32 236.3 24.1 311 92-436 43-370 (466)
28 2z7x_B TOLL-like receptor 1, v 100.0 9.9E-29 3.4E-33 244.4 19.5 340 71-434 21-483 (520)
29 3j0a_A TOLL-like receptor 5; m 100.0 5.1E-28 1.8E-32 252.1 24.0 326 93-437 22-399 (844)
30 3bz5_A Internalin-J, INLJ; leu 100.0 4.9E-28 1.7E-32 234.2 22.1 305 90-436 37-356 (457)
31 3oja_B Anopheles plasmodium-re 100.0 4.8E-28 1.6E-32 243.0 19.2 293 127-439 49-344 (597)
32 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-27 4.2E-32 238.7 21.5 338 70-433 51-511 (562)
33 2id5_A Lingo-1, leucine rich r 100.0 6.4E-28 2.2E-32 236.0 18.7 297 132-440 14-317 (477)
34 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-27 4.8E-32 243.9 21.9 349 72-437 223-602 (680)
35 3bz5_A Internalin-J, INLJ; leu 100.0 3.6E-27 1.2E-31 228.1 20.0 278 125-435 38-334 (457)
36 2z81_A CD282 antigen, TOLL-lik 99.9 7.6E-27 2.6E-31 232.5 18.7 330 95-439 26-407 (549)
37 4g8a_A TOLL-like receptor 4; l 99.9 2E-26 7E-31 233.4 21.0 357 69-439 50-562 (635)
38 4fcg_A Uncharacterized protein 99.9 1.9E-26 6.4E-31 213.7 18.7 241 126-437 78-319 (328)
39 1xku_A Decorin; proteoglycan, 99.9 4.3E-26 1.5E-30 212.0 20.1 284 129-430 31-330 (330)
40 2ft3_A Biglycan; proteoglycan, 99.9 5.1E-26 1.7E-30 211.7 17.8 282 130-430 34-331 (332)
41 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-26 5.1E-31 213.1 9.5 245 129-430 50-302 (313)
42 1ogq_A PGIP-2, polygalacturona 99.9 1.9E-26 6.7E-31 212.3 8.8 231 152-437 50-287 (313)
43 1jl5_A Outer protein YOPM; leu 99.9 1.4E-24 4.9E-29 209.7 20.5 304 71-434 91-411 (454)
44 2ft3_A Biglycan; proteoglycan, 99.9 2.3E-24 7.9E-29 200.4 17.7 263 129-407 54-331 (332)
45 1xku_A Decorin; proteoglycan, 99.9 4.2E-24 1.4E-28 198.6 19.2 271 150-433 29-307 (330)
46 4g8a_A TOLL-like receptor 4; l 99.9 2.9E-24 1E-28 217.6 19.6 140 95-245 52-194 (635)
47 1jl5_A Outer protein YOPM; leu 99.9 1.1E-23 3.9E-28 203.4 22.3 301 73-436 73-374 (454)
48 2z80_A TOLL-like receptor 2, v 99.9 2.8E-24 9.6E-29 201.6 13.0 256 129-435 52-317 (353)
49 2z66_A Variable lymphocyte rec 99.9 6.6E-24 2.2E-28 195.1 12.9 77 133-211 11-91 (306)
50 3g06_A SSPH2 (leucine-rich rep 99.9 6.5E-23 2.2E-27 204.2 20.3 260 129-434 40-299 (622)
51 2z66_A Variable lymphocyte rec 99.9 1.7E-23 5.8E-28 192.4 12.4 227 129-383 28-259 (306)
52 1wwl_A Monocyte differentiatio 99.9 2.7E-24 9.3E-29 198.0 6.1 253 150-433 41-310 (312)
53 4fcg_A Uncharacterized protein 99.9 5.1E-23 1.7E-27 190.6 13.3 221 94-381 80-310 (328)
54 1z7x_W Ribonuclease inhibitor; 99.9 3.7E-26 1.3E-30 222.6 -9.8 336 91-433 24-412 (461)
55 2z80_A TOLL-like receptor 2, v 99.9 5.7E-23 1.9E-27 192.7 12.2 253 95-384 52-313 (353)
56 3zyi_A Leucine-rich repeat-con 99.9 1.8E-22 6.1E-27 195.8 15.9 221 129-383 75-301 (452)
57 3zyj_A Leucine-rich repeat-con 99.9 1.8E-22 6E-27 195.1 15.6 221 129-383 64-290 (440)
58 1z7x_W Ribonuclease inhibitor; 99.9 1.8E-25 6.1E-30 217.7 -5.7 328 95-432 3-383 (461)
59 3zyi_A Leucine-rich repeat-con 99.9 3.9E-22 1.3E-26 193.3 17.3 247 130-434 55-305 (452)
60 1ozn_A Reticulon 4 receptor; N 99.9 3E-23 1E-27 188.6 8.8 221 132-383 14-236 (285)
61 3zyj_A Leucine-rich repeat-con 99.9 6.5E-22 2.2E-26 191.1 16.9 247 130-433 44-293 (440)
62 3o53_A Protein LRIM1, AGAP0063 99.9 2.6E-23 9E-28 191.9 6.2 243 126-410 31-276 (317)
63 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-23 5.3E-28 193.4 2.6 258 129-429 10-272 (317)
64 1wwl_A Monocyte differentiatio 99.9 1.2E-22 4.2E-27 186.9 4.5 247 128-410 42-310 (312)
65 3g06_A SSPH2 (leucine-rich rep 99.9 2.6E-20 9E-25 185.4 20.1 239 129-411 61-299 (622)
66 3oja_A Leucine-rich immune mol 99.8 6.1E-22 2.1E-26 193.2 7.0 236 127-404 32-270 (487)
67 1ozn_A Reticulon 4 receptor; N 99.8 6.2E-21 2.1E-25 173.3 13.3 223 155-433 14-239 (285)
68 3ogk_B Coronatine-insensitive 99.8 2.9E-22 1E-26 201.3 4.1 352 71-433 112-527 (592)
69 3oja_A Leucine-rich immune mol 99.8 1E-20 3.6E-25 184.5 12.8 225 142-432 20-250 (487)
70 3ogk_B Coronatine-insensitive 99.8 1.3E-21 4.5E-26 196.5 6.6 324 93-429 162-548 (592)
71 2z62_A TOLL-like receptor 4, v 99.8 1.1E-19 3.9E-24 164.2 14.7 202 129-360 28-237 (276)
72 2ast_B S-phase kinase-associat 99.8 1.3E-20 4.3E-25 175.6 6.9 255 130-416 48-314 (336)
73 2o6q_A Variable lymphocyte rec 99.8 2.3E-19 7.8E-24 161.5 14.8 125 130-258 17-143 (270)
74 3rfs_A Internalin B, repeat mo 99.8 2.9E-20 9.9E-25 167.5 8.7 107 148-258 37-143 (272)
75 1h6u_A Internalin H; cell adhe 99.8 2.2E-19 7.6E-24 164.7 13.8 146 127-284 39-184 (308)
76 3rfs_A Internalin B, repeat mo 99.8 6.5E-20 2.2E-24 165.2 9.1 177 126-311 38-215 (272)
77 2ast_B S-phase kinase-associat 99.8 3.9E-21 1.3E-25 179.0 0.3 252 153-437 48-311 (336)
78 1p9a_G Platelet glycoprotein I 99.8 3.9E-19 1.4E-23 161.4 12.9 200 126-359 7-207 (290)
79 2o6q_A Variable lymphocyte rec 99.8 1.3E-18 4.5E-23 156.5 15.9 200 152-383 16-216 (270)
80 2z62_A TOLL-like receptor 4, v 99.8 9.3E-19 3.2E-23 158.1 13.7 222 157-435 12-240 (276)
81 2ca6_A RAN GTPase-activating p 99.8 1.3E-20 4.4E-25 178.9 -0.2 83 129-211 9-107 (386)
82 1p9a_G Platelet glycoprotein I 99.8 2.8E-18 9.6E-23 155.7 15.0 201 148-432 6-208 (290)
83 2p1m_B Transport inhibitor res 99.8 5.9E-21 2E-25 191.8 -3.8 108 323-431 397-518 (594)
84 1h6u_A Internalin H; cell adhe 99.8 4.4E-18 1.5E-22 156.0 15.0 208 131-383 21-228 (308)
85 2ca6_A RAN GTPase-activating p 99.8 1.3E-20 4.5E-25 178.8 -2.6 88 125-212 28-136 (386)
86 2xwt_C Thyrotropin receptor; s 99.8 8.2E-18 2.8E-22 148.5 15.4 101 325-429 132-236 (239)
87 3goz_A Leucine-rich repeat-con 99.8 2.8E-19 9.5E-24 168.1 5.6 83 129-211 22-122 (362)
88 2p1m_B Transport inhibitor res 99.8 1.5E-20 5E-25 189.0 -3.6 324 93-430 154-542 (594)
89 4ay9_X Follicle-stimulating ho 99.8 5.4E-18 1.9E-22 158.4 14.0 78 323-405 177-255 (350)
90 2xwt_C Thyrotropin receptor; s 99.8 3.5E-18 1.2E-22 150.9 11.0 56 323-382 179-236 (239)
91 4glp_A Monocyte differentiatio 99.7 2.3E-18 8E-23 158.2 9.8 112 124-235 86-208 (310)
92 4glp_A Monocyte differentiatio 99.7 1.2E-17 4.2E-22 153.3 11.8 162 244-433 141-308 (310)
93 3goz_A Leucine-rich repeat-con 99.7 5E-19 1.7E-23 166.3 1.2 255 134-410 3-298 (362)
94 4ay9_X Follicle-stimulating ho 99.7 5.4E-17 1.8E-21 151.7 13.2 54 323-381 202-255 (350)
95 3m19_A Variable lymphocyte rec 99.7 2.5E-16 8.6E-21 139.9 14.1 177 129-360 14-192 (251)
96 1h6t_A Internalin B; cell adhe 99.7 1.5E-16 5.1E-21 144.5 12.7 149 126-286 43-191 (291)
97 3m19_A Variable lymphocyte rec 99.7 1.6E-16 5.6E-21 141.1 11.6 176 95-286 14-192 (251)
98 1m9s_A Internalin B; cell inva 99.7 1.3E-16 4.6E-21 158.6 10.6 149 126-286 18-166 (605)
99 1m9s_A Internalin B; cell inva 99.7 1.6E-16 5.4E-21 158.1 10.5 167 127-311 41-207 (605)
100 3cvr_A Invasion plasmid antige 99.7 2.3E-16 7.8E-21 155.3 11.3 190 129-365 59-248 (571)
101 1h6t_A Internalin B; cell adhe 99.7 5E-16 1.7E-20 141.0 11.7 173 92-288 43-215 (291)
102 4ezg_A Putative uncharacterize 99.6 1.8E-16 6.1E-21 135.4 7.4 80 129-210 44-124 (197)
103 4ezg_A Putative uncharacterize 99.6 2.8E-15 9.6E-20 127.9 11.4 155 245-433 41-195 (197)
104 2o6s_A Variable lymphocyte rec 99.6 1E-15 3.4E-20 131.9 8.3 77 133-211 11-89 (208)
105 1xeu_A Internalin C; cellular 99.6 6.2E-16 2.1E-20 138.1 7.2 149 126-287 16-164 (263)
106 3cvr_A Invasion plasmid antige 99.6 5.9E-15 2E-19 145.2 14.3 184 153-416 60-251 (571)
107 1xeu_A Internalin C; cellular 99.6 2.8E-15 9.5E-20 133.9 9.9 150 126-288 38-187 (263)
108 2v9t_B SLIT homolog 2 protein 99.6 3.9E-15 1.3E-19 129.2 9.2 129 129-259 32-163 (220)
109 1dce_A Protein (RAB geranylger 99.6 3.2E-17 1.1E-21 162.1 -5.2 203 172-437 346-551 (567)
110 2v70_A SLIT-2, SLIT homolog 2 99.6 4.9E-15 1.7E-19 128.6 8.0 129 130-260 33-165 (220)
111 2o6s_A Variable lymphocyte rec 99.5 1.8E-14 6.3E-19 124.0 10.1 56 154-211 9-65 (208)
112 2ell_A Acidic leucine-rich nuc 99.5 1.9E-14 6.5E-19 119.4 9.5 136 126-289 21-163 (168)
113 3e6j_A Variable lymphocyte rec 99.5 2E-14 6.8E-19 125.6 10.0 127 129-258 40-169 (229)
114 2v70_A SLIT-2, SLIT homolog 2 99.5 3.7E-14 1.3E-18 123.0 10.4 150 132-286 14-166 (220)
115 2v9t_B SLIT homolog 2 protein 99.5 2.4E-14 8E-19 124.3 8.8 150 132-286 14-165 (220)
116 2je0_A Acidic leucine-rich nuc 99.5 1.3E-14 4.4E-19 117.8 6.2 128 126-255 14-147 (149)
117 2xot_A Amphoterin-induced prot 99.5 3.2E-14 1.1E-18 133.4 8.5 123 132-258 21-146 (361)
118 4b8c_D Glucose-repressible alc 99.5 1.5E-14 5E-19 147.5 5.3 119 125-246 220-338 (727)
119 2xot_A Amphoterin-induced prot 99.5 3.6E-14 1.2E-18 133.0 7.3 173 98-286 21-202 (361)
120 3sb4_A Hypothetical leucine ri 99.5 5.1E-14 1.7E-18 130.3 7.9 99 323-425 226-327 (329)
121 3e6j_A Variable lymphocyte rec 99.5 1.3E-13 4.5E-18 120.4 9.5 131 95-237 40-172 (229)
122 1a9n_A U2A', U2A'; complex (nu 99.5 8E-14 2.7E-18 116.5 7.2 133 124-260 14-152 (176)
123 2ell_A Acidic leucine-rich nuc 99.4 9.8E-14 3.3E-18 115.0 7.1 133 152-312 24-158 (168)
124 1w8a_A SLIT protein; signaling 99.4 1.5E-13 5.3E-18 116.4 8.0 126 132-261 11-139 (192)
125 2wfh_A SLIT homolog 2 protein 99.4 5.5E-13 1.9E-17 113.0 10.2 125 132-260 13-138 (193)
126 4b8c_D Glucose-repressible alc 99.4 2.6E-13 9E-18 138.3 9.5 118 88-216 217-334 (727)
127 2je0_A Acidic leucine-rich nuc 99.4 2.1E-13 7.1E-18 110.6 4.7 128 150-281 15-148 (149)
128 1ds9_A Outer arm dynein; leuci 99.4 4.8E-14 1.6E-18 120.3 -0.1 116 140-260 36-152 (198)
129 1w8a_A SLIT protein; signaling 99.4 8.7E-13 3E-17 111.8 7.0 128 154-286 10-139 (192)
130 1dce_A Protein (RAB geranylger 99.3 1.6E-12 5.4E-17 128.6 8.8 151 125-280 405-567 (567)
131 2wfh_A SLIT homolog 2 protein 99.3 2.6E-12 8.8E-17 108.9 8.8 128 154-286 12-139 (193)
132 1ds9_A Outer arm dynein; leuci 99.3 2.6E-14 8.9E-19 122.0 -4.9 108 126-236 45-152 (198)
133 1a9n_A U2A', U2A'; complex (nu 99.3 1.7E-12 5.7E-17 108.4 5.5 133 91-236 15-152 (176)
134 3sb4_A Hypothetical leucine ri 99.3 5.8E-12 2E-16 116.4 9.1 281 93-403 23-328 (329)
135 2o6r_A Variable lymphocyte rec 99.3 1.3E-11 4.5E-16 103.1 9.8 127 131-261 9-137 (177)
136 2o6r_A Variable lymphocyte rec 99.2 6.7E-11 2.3E-15 98.7 11.4 112 322-435 27-140 (177)
137 2r9u_A Variable lymphocyte rec 99.2 7.6E-11 2.6E-15 97.9 8.3 99 132-234 15-115 (174)
138 3g39_A Variable lymphocyte rec 99.1 8.1E-11 2.8E-15 97.4 8.2 102 130-235 10-113 (170)
139 2r9u_A Variable lymphocyte rec 99.1 1.3E-10 4.6E-15 96.4 8.1 101 98-211 15-118 (174)
140 3g39_A Variable lymphocyte rec 99.0 4.7E-10 1.6E-14 92.8 8.3 105 153-261 10-115 (170)
141 4fdw_A Leucine rich hypothetic 99.0 5.1E-09 1.7E-13 98.9 16.4 241 130-406 136-380 (401)
142 4fdw_A Leucine rich hypothetic 99.0 1.2E-08 4.1E-13 96.3 15.6 264 151-434 112-385 (401)
143 4fs7_A Uncharacterized protein 98.8 1E-07 3.4E-12 90.2 16.6 309 86-429 62-376 (394)
144 3un9_A NLR family member X1; l 98.8 7.8E-10 2.7E-14 103.4 1.8 134 152-285 101-251 (372)
145 2ifg_A High affinity nerve gro 98.8 1.3E-08 4.3E-13 94.6 8.9 76 135-211 14-93 (347)
146 4fs7_A Uncharacterized protein 98.8 2.6E-07 8.9E-12 87.3 17.8 95 323-423 297-392 (394)
147 2ifg_A High affinity nerve gro 98.8 7.3E-09 2.5E-13 96.3 6.2 87 126-212 28-117 (347)
148 2ra8_A Uncharacterized protein 98.7 2.6E-09 9E-14 99.1 2.8 109 323-431 193-319 (362)
149 3un9_A NLR family member X1; l 98.7 6.7E-10 2.3E-14 103.9 -2.6 135 151-285 71-223 (372)
150 2ra8_A Uncharacterized protein 98.6 2.6E-08 8.9E-13 92.4 5.6 81 125-207 135-228 (362)
151 3e4g_A ATP synthase subunit S, 98.4 1.5E-07 5.2E-12 76.7 3.1 88 323-411 61-154 (176)
152 3e4g_A ATP synthase subunit S, 98.3 2E-07 6.8E-12 76.0 2.9 83 347-430 61-150 (176)
153 4gt6_A Cell surface protein; l 98.3 2E-05 7E-10 74.2 17.0 109 87-208 55-170 (394)
154 1io0_A Tropomodulin; LRR prote 98.3 2.8E-07 9.7E-12 77.0 2.8 115 125-261 32-164 (185)
155 1io0_A Tropomodulin; LRR prote 98.2 3.4E-07 1.2E-11 76.5 2.6 119 145-285 29-163 (185)
156 4gt6_A Cell surface protein; l 98.2 2.5E-05 8.6E-10 73.6 15.2 318 73-431 66-390 (394)
157 3rw6_A Nuclear RNA export fact 98.1 2.3E-06 8E-11 75.2 6.0 81 150-231 168-258 (267)
158 3rw6_A Nuclear RNA export fact 98.1 4.3E-07 1.5E-11 79.8 0.2 104 148-255 137-258 (267)
159 4h09_A Hypothetical leucine ri 98.0 0.00026 8.9E-09 66.2 16.9 38 342-380 281-318 (379)
160 2a5y_B CED-4; apoptosis; HET: 97.7 8.7E-06 3E-10 80.2 2.1 48 2-53 426-473 (549)
161 4h09_A Hypothetical leucine ri 97.6 0.0028 9.6E-08 59.1 16.8 138 297-440 213-353 (379)
162 1pgv_A TMD-1, tropomodulin TMD 96.5 0.0018 6.3E-08 53.6 3.8 62 127-188 39-111 (197)
163 3rfe_A Platelet glycoprotein I 96.1 0.008 2.8E-07 46.3 5.3 51 133-185 12-65 (130)
164 3rfe_A Platelet glycoprotein I 96.0 0.0091 3.1E-07 46.0 5.1 55 155-211 11-68 (130)
165 1pgv_A TMD-1, tropomodulin TMD 95.7 0.0066 2.3E-07 50.3 3.4 112 148-259 37-168 (197)
166 3sfz_A APAF-1, apoptotic pepti 95.4 0.01 3.5E-07 64.5 4.7 45 4-51 408-452 (1249)
167 1z6t_A APAF-1, apoptotic prote 92.2 0.12 4.1E-06 51.1 4.8 42 4-48 408-449 (591)
168 1vt4_I APAF-1 related killer D 88.2 0.18 6E-06 52.6 2.0 36 4-44 401-436 (1221)
169 2lz0_A Uncharacterized protein 24.0 1.4E+02 0.0049 20.9 5.1 38 367-406 15-53 (100)
170 3gdz_A Arginyl-tRNA synthetase 20.1 81 0.0028 22.7 3.1 50 1-50 56-105 (109)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=6.4e-32 Score=272.37 Aligned_cols=347 Identities=17% Similarity=0.102 Sum_probs=224.7
Q ss_pred CCceeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-hhhh
Q 013456 70 DLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-PETI 148 (442)
Q Consensus 70 ~~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l 148 (442)
...++++.+..+.........+.++++|+.|.+.++....++...| .++++|++|++++|.+..+ |..+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~----------~~l~~L~~L~Ls~n~l~~~~p~~~ 100 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW----------HGLHHLSNLILTGNPIQSFSPGSF 100 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT----------TTCTTCCEEECTTCCCCCCCTTSS
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHh----------hchhhcCEeECCCCcccccChhhc
Confidence 3567777776666665566667777888888777765544443322 4467777777777776666 5667
Q ss_pred hcccccceecccccccccCC-ccccccCCCcEEeecCcccc--ccchhhhcccccceeeeccccccccccCCCCCCCCc-
Q 013456 149 GKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNIT--SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLT- 224 (442)
Q Consensus 149 ~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~- 224 (442)
+++++|++|++++|.+..+| ..++++++|++|++++|.++ .+|..++++++|++|++++|.+.+..+. .++.++
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~ 178 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN--DLQFLRE 178 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT--TTHHHHH
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh--hhhhhhc
Confidence 77777777777777777665 55777777777777777776 4677777777777777777765432221 111111
Q ss_pred --------------------------ccccccccc---------------------------------------------
Q 013456 225 --------------------------NLRTLWGLS--------------------------------------------- 233 (442)
Q Consensus 225 --------------------------~L~~L~~~~--------------------------------------------- 233 (442)
+|+.|++.+
T Consensus 179 L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred cccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 222222222
Q ss_pred ----------------------------------------------------------cCCCCCchhhhccccCcceeeE
Q 013456 234 ----------------------------------------------------------IGKKSPPLNWLENLSDLKNLGL 255 (442)
Q Consensus 234 ----------------------------------------------------------~~~~~~~~~~l~~l~~L~~L~l 255 (442)
+.. ..++ .+ .+++|+.|++
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l 335 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTL 335 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEE
T ss_pred hhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC-CCCccceeec
Confidence 111 1111 11 2223333333
Q ss_pred Ee----------------------eccccc-hhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecccc
Q 013456 256 IC----------------------NIASLG-KITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRL 312 (442)
Q Consensus 256 ~~----------------------~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 312 (442)
++ |..... ..+..+..+++|+.|++++|.....+ ..+..+++|+.|+++++.
T Consensus 336 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-----~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 336 TMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-----ANFMGLEELQHLDFQHST 410 (606)
T ss_dssp ESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-----CCCTTCTTCCEEECTTSE
T ss_pred cCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-----hhccCCCCCCeeECCCCc
Confidence 32 222100 01333444455555555554443322 245667888888888763
Q ss_pred C---CC-cccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceE
Q 013456 313 P---GP-LKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEW 388 (442)
Q Consensus 313 ~---~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 388 (442)
. .+ ..+..+ ++|+.|++++|.+++..+..++.+++|+.|++++|.+.+......+..+++|+.|++++|......
T Consensus 411 l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 489 (606)
T 3vq2_A 411 LKRVTEFSAFLSL-EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS 489 (606)
T ss_dssp EESTTTTTTTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred cCCccChhhhhcc-ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC
Confidence 1 12 344444 789999999998887778888889999999999998876544555788899999999987544444
Q ss_pred EeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCCC
Q 013456 389 TIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPED 437 (442)
Q Consensus 389 ~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~ 437 (442)
+...+.+++|+.|++++|..... |..+..+++|++|++++|+++.+|+.
T Consensus 490 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 490 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence 55567889999999999988877 88888899999999999999888876
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=5.9e-32 Score=279.03 Aligned_cols=301 Identities=21% Similarity=0.153 Sum_probs=195.6
Q ss_pred cCceeEEEecCCCCCC-CChhhhhccc-ccceecccccccc-cCCccccc--cCCCcEEeecCcccc-ccchhhhccccc
Q 013456 127 GYRLLRVLDLEDVYKP-VLPETIGKLQ-LLRYVGLRRTFID-SIPKSLGD--LHSLETLDMKHTNIT-SLPKSIWKVKTL 200 (442)
Q Consensus 127 ~~~~L~~L~l~~~~~~-~l~~~l~~l~-~L~~L~L~~~~i~-~lp~~~~~--l~~L~~L~L~~~~l~-~lp~~i~~l~~L 200 (442)
++++|++|++++|.+. .+|..+.+++ +|++|++++|.+. .+|..+.. +++|++|++++|.++ .+|..+.++++|
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 420 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTC
T ss_pred cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCC
Confidence 3455555555544433 4444454444 5555555555443 23444433 556666666666665 566667777777
Q ss_pred ceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCccccccee
Q 013456 201 RHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRL 280 (442)
Q Consensus 201 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 280 (442)
++|++++|.+.+..|. .++.+++|+.|++..+...+..+..+..+++|+.|++++|.+. +.+|..+..+++|+.|++
T Consensus 421 ~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPS--SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-GEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp CEEECCSSEEESCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEEC
T ss_pred CEEECcCCcccCcccH--HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc-CcCCHHHhcCCCCCEEEc
Confidence 7777777776655443 4667777777777777666666777777777777777777654 456666777777777777
Q ss_pred eccccccCCccccccccCCcCCCceEEeccccC---CCcccccCCCceeEEEEeccCCCCCCccc---------------
Q 013456 281 RSINDFYVPSDLAIGSLNNHKELKELYLLGRLP---GPLKLHELPPNLRIFTLSLSYLSEDPMPV--------------- 342 (442)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------- 342 (442)
++|......+. .+..+++|+.|+++++.. .+..+..+ ++|+.|++++|.+++.+|..
T Consensus 498 ~~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 498 SNNRLTGEIPK----WIGRLENLAILKLSNNSFSGNIPAELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CSSCCCSCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred cCCccCCcCCh----HHhcCCCCCEEECCCCcccCcCCHHHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 77765532221 245566777777776632 24445555 67777777777665433322
Q ss_pred -------------------------------------------------------ccCCCCCcEEEeCcccccCcccccC
Q 013456 343 -------------------------------------------------------LGQLRELKALRLFAHSYIGEKMTCG 367 (442)
Q Consensus 343 -------------------------------------------------------l~~l~~L~~L~l~~~~~~~~~~~~~ 367 (442)
++.+++|+.|++++|.+.+.++..
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~- 651 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE- 651 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG-
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH-
Confidence 333567778888888877766654
Q ss_pred CCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEecccccc-ccCC
Q 013456 368 NGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLK-MKPE 436 (442)
Q Consensus 368 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~-~~p~ 436 (442)
++.+++|+.|++++|.....+|...+.+++|+.|++++|..... |..+.++++|++|++++|+++ .+|+
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 77788888888888766667777778888888888888887755 888888888888888888885 3443
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=8.3e-32 Score=277.89 Aligned_cols=348 Identities=21% Similarity=0.162 Sum_probs=215.3
Q ss_pred CceeEEEEecCCCCCCCCCCccccccceeEEEEeecCC-CCCCchhhhHHHHHHhhhcCceeEEEecCCCCCC-CChhhh
Q 013456 71 LCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKG-GKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKP-VLPETI 148 (442)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l 148 (442)
...+.+.+..+......+.. .+++|+.|.+.++... .+|.. +. ..+++|++|++++|.+. .+|..+
T Consensus 247 ~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~-~~---------~~~~~L~~L~Ls~n~l~~~~p~~~ 314 (768)
T 3rgz_A 247 TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDF-LS---------GACDTLTGLDLSGNHFYGAVPPFF 314 (768)
T ss_dssp SSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCC-SC---------TTCTTCSEEECCSSEEEECCCGGG
T ss_pred CCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHH-HH---------hhcCcCCEEECcCCcCCCccchHH
Confidence 34556665544432222221 5666777766655433 33332 11 11356666666665543 455566
Q ss_pred hcccccceecccccccc-cCCcc-ccccCCCcEEeecCcccc-ccchhhhccc-ccceeeeccccccccccCC-------
Q 013456 149 GKLQLLRYVGLRRTFID-SIPKS-LGDLHSLETLDMKHTNIT-SLPKSIWKVK-TLRHLYLNDIHLQMSVQKP------- 217 (442)
Q Consensus 149 ~~l~~L~~L~L~~~~i~-~lp~~-~~~l~~L~~L~L~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~~~~~~------- 217 (442)
+++++|++|++++|.+. .+|.. ++++++|++|++++|.++ .+|..+..++ +|++|++++|.+.+..+..
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 394 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccC
Confidence 66666666666666654 55544 566666666666666665 5565555554 5555555555554433321
Q ss_pred -----------------CCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCccccccee
Q 013456 218 -----------------FVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRL 280 (442)
Q Consensus 218 -----------------~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 280 (442)
..++++++|+.|++..+...+..+..++.+++|+.|+++.|... +.++..+..+++|+.|++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE-GEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEEC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc-CcCCHHHcCCCCceEEEe
Confidence 13455555555555555544455555556666666666655443 445555556666666666
Q ss_pred eccccccCCccccccccCCcCCCceEEecccc---CCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcc
Q 013456 281 RSINDFYVPSDLAIGSLNNHKELKELYLLGRL---PGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAH 357 (442)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 357 (442)
++|....... ..+..+++|+.|+++++. ..+.++..+ ++|+.|++++|.+++..|..++.+++|+.|++++|
T Consensus 474 ~~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 474 DFNDLTGEIP----SGLSNCTNLNWISLSNNRLTGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CSSCCCSCCC----GGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred cCCcccCcCC----HHHhcCCCCCEEEccCCccCCcCChHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 6665543221 135567778888887763 234556665 67888888888887777778888888888888888
Q ss_pred cccCccccc---------------------------------------------------------------------CC
Q 013456 358 SYIGEKMTC---------------------------------------------------------------------GN 368 (442)
Q Consensus 358 ~~~~~~~~~---------------------------------------------------------------------~~ 368 (442)
.+.+..+.. .+
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 765433321 12
Q ss_pred CCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEecccccc-ccCC
Q 013456 369 GGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLK-MKPE 436 (442)
Q Consensus 369 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~-~~p~ 436 (442)
..+++|+.|++++|.....+|...+.+++|+.|++++|..... |..+.++++|+.|+|++|+++ .+|+
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 3456788888888776667787788899999999999988855 888999999999999999997 4443
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4e-31 Score=266.83 Aligned_cols=342 Identities=14% Similarity=0.103 Sum_probs=273.8
Q ss_pred CCceeEEEEecCCCCCC-----------------CCCCcc--ccccceeEEEEeecC-CCCCCchhhhHHHHHHhhhcCc
Q 013456 70 DLCVCRLAEHLDNLSSI-----------------TPSDKK--QFEYLHSYLFFVKRK-GGKPAGEFGNLLKMVIAIRGYR 129 (442)
Q Consensus 70 ~~~~~~l~~~~~~~~~~-----------------~~~~~~--~~~~lr~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 129 (442)
-...+.+.+..+..... .+..+. .+++|+.|.+.++.. +.+|. .+.+++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-----------~l~~l~ 273 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-----------FLKALP 273 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-----------TTTTCS
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-----------HHhcCC
Confidence 34677888877766542 445555 899999999998864 44443 235689
Q ss_pred eeEEEecCCCC-CC--CChhhhhcc------cccceecccccccccCCc--cccccCCCcEEeecCcccc-ccchhhhcc
Q 013456 130 LLRVLDLEDVY-KP--VLPETIGKL------QLLRYVGLRRTFIDSIPK--SLGDLHSLETLDMKHTNIT-SLPKSIWKV 197 (442)
Q Consensus 130 ~L~~L~l~~~~-~~--~l~~~l~~l------~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~l~-~lp~~i~~l 197 (442)
+|++|++++|. +. .+|..++.+ ++|++|++++|.+..+|. .++++++|++|++++|.++ .+| .+..+
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 99999999986 76 488888887 999999999999999998 8999999999999999999 999 89999
Q ss_pred cccceeeeccccccccccCCCCCCCCcc-cccccccccCCCCCchhhhcccc--CcceeeEEeeccccchhHHhhc----
Q 013456 198 KTLRHLYLNDIHLQMSVQKPFVKPSLTN-LRTLWGLSIGKKSPPLNWLENLS--DLKNLGLICNIASLGKITNLIQ---- 270 (442)
Q Consensus 198 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~-L~~L~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~l~---- 270 (442)
++|++|++++|.+. .+|. .++.+++ |+.|++.++... .++..+..++ +|+.|++++|.+. +..|..+.
T Consensus 353 ~~L~~L~L~~N~l~-~lp~--~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~~~~ 427 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIPA--NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG-SVDGKNFDPLDP 427 (636)
T ss_dssp EEESEEECCSSEEE-ECCT--TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTT-TTTTCSSCTTCS
T ss_pred CCCCEEECCCCccc-cccH--hhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCC-Ccchhhhccccc
Confidence 99999999999987 4544 5889999 999999988876 5666666654 8999999999776 55666666
Q ss_pred ---CCcccccceeeccccccCCccccccccCCcCCCceEEeccccCC--CcccccCC-------CceeEEEEeccCCCCC
Q 013456 271 ---GLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPG--PLKLHELP-------PNLRIFTLSLSYLSED 338 (442)
Q Consensus 271 ---~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~-------~~L~~L~l~~~~~~~~ 338 (442)
.+.+|+.|++++|.+...+... +..+++|+.|+++++... +....... ++|+.|++++|.++ .
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 502 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKEL----FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-K 502 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHH----HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-B
T ss_pred ccccCCCCCEEECcCCccCcCCHHH----HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-c
Confidence 6789999999999887655432 445789999999987432 11111111 18999999999998 6
Q ss_pred Cccccc--CCCCCcEEEeCcccccCcccccCCCCCCcccEEEecc------cCCcceEEeCCCccccccEEEeccCCCCC
Q 013456 339 PMPVLG--QLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWV------LKELKEWTIEEGAMTALEKLEIRNCPKLK 410 (442)
Q Consensus 339 ~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~~L~~L~l~~c~~l~ 410 (442)
++..+. .+++|+.|++++|.+.+ .+. .+..+++|+.|++++ |.....++...+.+++|+.|++++|.+..
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 580 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSS-CCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB
T ss_pred cChhhhhccCCCcCEEECCCCCCCC-cCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCc
Confidence 677776 89999999999999986 433 367899999999954 44455677777889999999999999977
Q ss_pred CCccCCCCCCCcEEEeccccccccCCC
Q 013456 411 MPTELTKLSNLKELTLVKKVLKMKPED 437 (442)
Q Consensus 411 ~p~~l~~l~~L~~L~l~~n~l~~~p~~ 437 (442)
+|..+. ++|++|++++|++..++..
T Consensus 581 ip~~~~--~~L~~L~Ls~N~l~~~~~~ 605 (636)
T 4eco_A 581 VNEKIT--PNISVLDIKDNPNISIDLS 605 (636)
T ss_dssp CCSCCC--TTCCEEECCSCTTCEEECT
T ss_pred cCHhHh--CcCCEEECcCCCCccccHH
Confidence 787765 8999999999999887654
No 5
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=8.4e-31 Score=259.29 Aligned_cols=139 Identities=17% Similarity=0.146 Sum_probs=88.6
Q ss_pred CCcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCC--CCcccccCCCCCcEEEeCcccccCcccccCCCCCC
Q 013456 298 NNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSE--DPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFP 372 (442)
Q Consensus 298 ~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 372 (442)
..+++|++|+++++... +.++..+ ++|+.|++++|.+++ ..+..++.+++|+.|++++|.+.+..+...+..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccC-CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 34556666666655321 2334444 566666666666654 23345666667777777766665544443455667
Q ss_pred cccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCCCCC
Q 013456 373 QLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPEDAW 439 (442)
Q Consensus 373 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~~~~ 439 (442)
+|++|++++|......+... .++|+.|++++|.+..+|..+..+++|++|++++|+++.+|...+
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l--~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~ 464 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIF 464 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSC--CTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCEEECcCCCCCcchhhhh--cccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHh
Confidence 77777777664333222111 168888888888887778878888999999999999988887643
No 6
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=260.72 Aligned_cols=139 Identities=13% Similarity=0.066 Sum_probs=85.8
Q ss_pred cCCcCCCceEEeccccC----CCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCC
Q 013456 297 LNNHKELKELYLLGRLP----GPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFP 372 (442)
Q Consensus 297 ~~~~~~L~~l~l~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 372 (442)
+..+++|+.|++.++.. ....+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+...+..+..++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcC-CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 34455666666655421 11223333 66777777777766666666777777777777777665322333466777
Q ss_pred cccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCC
Q 013456 373 QLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPE 436 (442)
Q Consensus 373 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~ 436 (442)
+|+.|++++|......+...+.+++|+.|++++|..... |..+..+++|++|++++|++++-.+
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 777777777643333344556677777777777766666 4456777777777777777765443
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=4e-30 Score=259.30 Aligned_cols=114 Identities=20% Similarity=0.185 Sum_probs=61.8
Q ss_pred CceeEEEEeccCCCCCCcc-cccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcce-EE--eCCCccccc
Q 013456 323 PNLRIFTLSLSYLSEDPMP-VLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKE-WT--IEEGAMTAL 398 (442)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~--~~~~~~~~L 398 (442)
++|+.|++++|.+++..+. .+..+++|+.|++++|.+.+..+. .+..+++|++|++++|..... ++ .....+++|
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ-LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT-TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH-HHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence 3444444444444333222 244555555555555554432222 245566666666666543221 11 223456677
Q ss_pred cEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCCC
Q 013456 399 EKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPED 437 (442)
Q Consensus 399 ~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~ 437 (442)
+.|++++|..... |..+..+++|++|++++|+++.+++.
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 518 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence 7777777766665 66677777777777777777665544
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=5.9e-30 Score=239.92 Aligned_cols=307 Identities=19% Similarity=0.171 Sum_probs=243.3
Q ss_pred ccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCcc
Q 013456 91 KKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS 170 (442)
Q Consensus 91 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~ 170 (442)
...+++++.+.+.++.....+. +..+++|++|++++|.+..++. +..+++|++|++++|.+..+| .
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~------------~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~ 105 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG------------IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-A 105 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT------------GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-G
T ss_pred chhcccccEEEEeCCccccchh------------hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-H
Confidence 3467888888888776554432 3558999999999999888877 889999999999999988876 5
Q ss_pred ccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCc
Q 013456 171 LGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDL 250 (442)
Q Consensus 171 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L 250 (442)
++++++|++|++++|.+..++. +..+++|++|++++|......+ .+..+++|+.|++.++......+ +..+++|
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L 179 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTESKVKDVTP--IANLTDL 179 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG---GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred HcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc---chhhCCCCcEEEecCCCcCCchh--hccCCCC
Confidence 8899999999999999998877 8899999999999996654443 37889999999988887655443 8889999
Q ss_pred ceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCC-CcccccCCCceeEEE
Q 013456 251 KNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPG-PLKLHELPPNLRIFT 329 (442)
Q Consensus 251 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~L~~L~ 329 (442)
+.|++++|... .++. +..+++|+.+++++|.....+. +..+++|+.|+++++... ...+..+ ++|+.|+
T Consensus 180 ~~L~l~~n~l~--~~~~-~~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~~~~~~~~l-~~L~~L~ 249 (347)
T 4fmz_A 180 YSLSLNYNQIE--DISP-LASLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKITDLSPLANL-SQLTWLE 249 (347)
T ss_dssp SEEECTTSCCC--CCGG-GGGCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCGGGTTC-TTCCEEE
T ss_pred CEEEccCCccc--cccc-ccCCCccceeecccCCCCCCch------hhcCCcCCEEEccCCccCCCcchhcC-CCCCEEE
Confidence 99999988653 3333 7788999999999987654432 557889999999887432 2224444 8999999
Q ss_pred EeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCC
Q 013456 330 LSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKL 409 (442)
Q Consensus 330 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l 409 (442)
+++|.+++. +.+..+++|+.|++++|.+.+. ..+..+++|+.|++++|......+...+.+++|+.|++++|+..
T Consensus 250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred CCCCccCCC--hhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 999988753 5788999999999999988764 22678999999999998655444455567899999999999988
Q ss_pred CCCccCCCCCCCcEEEeccccccc
Q 013456 410 KMPTELTKLSNLKELTLVKKVLKM 433 (442)
Q Consensus 410 ~~p~~l~~l~~L~~L~l~~n~l~~ 433 (442)
..+. +..+++|++|++++|+|++
T Consensus 325 ~~~~-~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 325 DIRP-LASLSKMDSADFANQVIKK 347 (347)
T ss_dssp CCGG-GGGCTTCSEESSSCC----
T ss_pred cccC-hhhhhccceeehhhhcccC
Confidence 7744 8899999999999999863
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=3e-30 Score=251.09 Aligned_cols=330 Identities=14% Similarity=0.019 Sum_probs=226.7
Q ss_pred cccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCC-CC-hhhhhcccccceecccccccccC-Ccc
Q 013456 94 FEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKP-VL-PETIGKLQLLRYVGLRRTFIDSI-PKS 170 (442)
Q Consensus 94 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l-~~~l~~l~~L~~L~L~~~~i~~l-p~~ 170 (442)
.++++.|.+.++.....+.. .+.++++|++|++++|.+. .+ +..+.++++|++|++++|.+..+ |..
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~----------~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 98 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNET----------SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98 (455)
T ss_dssp CTTCCEEECCSSCCCEECTT----------TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred CCccCEEEecCCccCcCChh----------HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh
Confidence 37899999988866555443 2356899999999988764 44 45788999999999999998876 778
Q ss_pred ccccCCCcEEeecCccccc-cchh--hhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccc
Q 013456 171 LGDLHSLETLDMKHTNITS-LPKS--IWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENL 247 (442)
Q Consensus 171 ~~~l~~L~~L~L~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l 247 (442)
++++++|++|++++|.++. .|.. +.++++|++|++++|.+.+..|.. .++.+++|++|++.++......+..+..+
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS-FFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG-GGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc-ccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 8999999999999999884 4544 888999999999999887554432 37889999999999888777767767666
Q ss_pred --cCcceeeEEeeccccch-------hHHhhcCCcccccceeeccccccCCccccc------------------------
Q 013456 248 --SDLKNLGLICNIASLGK-------ITNLIQGLTSLESLRLRSINDFYVPSDLAI------------------------ 294 (442)
Q Consensus 248 --~~L~~L~l~~~~~~~~~-------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~------------------------ 294 (442)
.+|+.|+++.|...... ....+..+++|+.|++++|...........
T Consensus 178 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 257 (455)
T 3v47_A 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257 (455)
T ss_dssp TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc
Confidence 67888888877543110 111233567899999998865431110000
Q ss_pred ---------cccC--CcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCccccc
Q 013456 295 ---------GSLN--NHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYI 360 (442)
Q Consensus 295 ---------~~~~--~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 360 (442)
..+. ..++|+.++++++... +..+..+ ++|+.|++++|.+++..+..++.+++|+.|++++|.+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 336 (455)
T 3v47_A 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336 (455)
T ss_dssp CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred hhhhccCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence 0000 1246667777665321 2334444 67777777777777666667777777777777777765
Q ss_pred CcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCC-ccCCCCCCCcEEEeccccccccCC
Q 013456 361 GEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMP-TELTKLSNLKELTLVKKVLKMKPE 436 (442)
Q Consensus 361 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p-~~l~~l~~L~~L~l~~n~l~~~p~ 436 (442)
+..+ ..+..+++|++|++++|......+.....+++|+.|++++|.+...| ..+..+++|++|++++|+++.-.+
T Consensus 337 ~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 337 SIDS-RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EECG-GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CcCh-hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 4332 23667777777777776433223445566777777777777776663 345677777777777777765443
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=8.6e-31 Score=264.41 Aligned_cols=335 Identities=15% Similarity=0.104 Sum_probs=263.8
Q ss_pred CCCccccccceeEEEEeecCCC------------------CCCchhhhHHHHHHhhhcCceeEEEecCCCC-CCCChhhh
Q 013456 88 PSDKKQFEYLHSYLFFVKRKGG------------------KPAGEFGNLLKMVIAIRGYRLLRVLDLEDVY-KPVLPETI 148 (442)
Q Consensus 88 ~~~~~~~~~lr~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l~~~l 148 (442)
+..+.++++|+.|.+.++.... +|.. + .+.++++|++|++++|. .+.+|..+
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l--------~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-L--------KWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-C--------CGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-h--------hhcccCCCCEEEecCCcCCccChHHH
Confidence 3456788999999999887655 4432 1 11268999999999885 67789999
Q ss_pred hcccccceecccccc-cc--cCCcccccc------CCCcEEeecCccccccch--hhhcccccceeeeccccccccccCC
Q 013456 149 GKLQLLRYVGLRRTF-ID--SIPKSLGDL------HSLETLDMKHTNITSLPK--SIWKVKTLRHLYLNDIHLQMSVQKP 217 (442)
Q Consensus 149 ~~l~~L~~L~L~~~~-i~--~lp~~~~~l------~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~ 217 (442)
+++++|++|++++|. +. .+|..++++ ++|++|++++|.++.+|. .++++++|++|++++|.+.+.+|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-- 347 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-- 347 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--
Confidence 999999999999998 87 489888887 999999999999999999 89999999999999999987777
Q ss_pred CCCCCCcccccccccccCCCCCchhhhccccC-cceeeEEeeccccchhHHhhcCCc--ccccceeeccccccCCcc-cc
Q 013456 218 FVKPSLTNLRTLWGLSIGKKSPPLNWLENLSD-LKNLGLICNIASLGKITNLIQGLT--SLESLRLRSINDFYVPSD-LA 293 (442)
Q Consensus 218 ~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~-~~ 293 (442)
.++.+++|+.|++.++... .++..+..+++ |+.|++++|.+. .+|..+..++ +|+.|++++|.+....+. +.
T Consensus 348 -~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 348 -AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp -CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred -hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence 4899999999999888766 66777999999 999999999764 6777666654 899999999887653222 11
Q ss_pred --ccccCCcCCCceEEeccccCC--CcccccCCCceeEEEEeccCCCCCCcccccCC-------CCCcEEEeCcccccCc
Q 013456 294 --IGSLNNHKELKELYLLGRLPG--PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQL-------RELKALRLFAHSYIGE 362 (442)
Q Consensus 294 --~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-------~~L~~L~l~~~~~~~~ 362 (442)
......+.+|+.|+++++... +..+....++|+.|++++|.++......+... ++|+.|++++|.+..
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~- 502 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK- 502 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-
T ss_pred ccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-
Confidence 001115678999999987432 22233323899999999999984333333333 399999999999883
Q ss_pred ccccCC-CCCCcccEEEecccCCcceEEeCCCccccccEEEecc------CCCCCC-CccCCCCCCCcEEEecccccccc
Q 013456 363 KMTCGN-GGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRN------CPKLKM-PTELTKLSNLKELTLVKKVLKMK 434 (442)
Q Consensus 363 ~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~------c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~ 434 (442)
.+.... ..+++|+.|++++|. +..++.....+++|+.|++++ |...+. |..+.++++|++|+|++|+++.+
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i 581 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV 581 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred cChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCcc
Confidence 443312 489999999999975 445887788899999999965 444544 99999999999999999999999
Q ss_pred CCCCC
Q 013456 435 PEDAW 439 (442)
Q Consensus 435 p~~~~ 439 (442)
|...+
T Consensus 582 p~~~~ 586 (636)
T 4eco_A 582 NEKIT 586 (636)
T ss_dssp CSCCC
T ss_pred CHhHh
Confidence 98754
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=5.4e-30 Score=250.66 Aligned_cols=298 Identities=17% Similarity=0.128 Sum_probs=221.3
Q ss_pred ceeEEEecCCCCCCCCh-hhhhcccccceecccccccccC-CccccccCCCcEEeecCccccccchh-hhcccccceeee
Q 013456 129 RLLRVLDLEDVYKPVLP-ETIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYL 205 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 205 (442)
+.+++|++++|.+..++ ..|.++++|++|+|++|.+..+ |..++++++|++|+|++|.++.+|.. +.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 45777888877776663 4677778888888888777766 66677788888888888877777654 567788888888
Q ss_pred ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND 285 (442)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 285 (442)
++|.+....+. .+..+++|+.|++.++......+..+..+++|+.|+++.|.+. ...+..+..+++|+.|++++|..
T Consensus 112 s~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 112 SENKIVILLDY--MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp TTSCCCEECTT--TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCC
T ss_pred CCCccccCChh--HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcC
Confidence 88777654443 4677778888877777665555666777888888888877654 33445677788888888888776
Q ss_pred ccCCccccccccCCcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCc
Q 013456 286 FYVPSDLAIGSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGE 362 (442)
Q Consensus 286 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 362 (442)
...+. ..+..+++|+.|+++++... +...... .+|+.|++++|.++......+..+++|+.|++++|.+.+.
T Consensus 189 ~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 263 (477)
T 2id5_A 189 NAIRD----YSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263 (477)
T ss_dssp CEECT----TCSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred cEeCh----hhcccCcccceeeCCCCccccccCcccccC-ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc
Confidence 55433 23566788888888775321 1222222 4899999999999866656789999999999999998754
Q ss_pred ccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccC
Q 013456 363 KMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKP 435 (442)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p 435 (442)
. ...+..+++|+.|++++|......+.....+++|+.|++++|.+..+ +..+..+++|++|++++|++.+-.
T Consensus 264 ~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 264 E-GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp C-TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred C-hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 3 33478899999999999754433455667899999999999998888 556788999999999999987543
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=3.2e-30 Score=259.98 Aligned_cols=275 Identities=17% Similarity=0.199 Sum_probs=168.3
Q ss_pred cceecccccccccCCc-cccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCccccccccc
Q 013456 154 LRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGL 232 (442)
Q Consensus 154 L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~ 232 (442)
|++|++++|.+..++. .++.+++|++|++++|.++.+|..+..+++|++|++++|.+....+. .++.+++|+.|++.
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI--SASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGG--CGGGCTTCSEEECC
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchh--hhhccCcCCEEECC
Confidence 4444444444444433 25666677777777777777777677777777777777766544332 36666777777766
Q ss_pred ccCCCCCch-hhhccccCcceeeEEeeccccchh--HHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEec
Q 013456 233 SIGKKSPPL-NWLENLSDLKNLGLICNIASLGKI--TNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLL 309 (442)
Q Consensus 233 ~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 309 (442)
++......+ ..++.+++|+.|++++|... ... +..+..+++|+.|++++|.....+. ..+..+++|+.|+++
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLSLKT----EAFKECPQLELLDLA 408 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCC-EEEESTTTTTTCTTCCEEECCSCSCEEECT----TTTTTCTTCSEEECT
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccc-cccCcchhcccCCCCCEEECCCCcCCcCCH----HHhcCCccCCeEECC
Confidence 665543332 23666777777777766543 221 4456666777777777765544322 235556777777776
Q ss_pred cccC----CCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccc--cCCCCCCcccEEEecccC
Q 013456 310 GRLP----GPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMT--CGNGGFPQLRVLKLWVLK 383 (442)
Q Consensus 310 ~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~ 383 (442)
++.. .+..+..+ ++|+.|++++|.+++..+..++.+++|+.|++++|.+.+.... ..+..+++|+.|++++|.
T Consensus 409 ~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNL-HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TCCEECCTTCCTTTTC-TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CCcCCCcccchhhhCc-ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 6531 11223344 6777777777777666666677777777777777776542221 225567777777777764
Q ss_pred CcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCCC
Q 013456 384 ELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPED 437 (442)
Q Consensus 384 ~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~ 437 (442)
.....+...+.+++|+.|++++|..... |..+.++++| .|++++|+++.+|+.
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG
T ss_pred cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHh
Confidence 3333344556677777777777766665 6667777777 777777777666654
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.2e-29 Score=246.85 Aligned_cols=323 Identities=18% Similarity=0.153 Sum_probs=242.0
Q ss_pred CCCceeEEEEecCCCCCCCCCCccccccceeEEEEeecCC-CCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-hh
Q 013456 69 SDLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKG-GKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-PE 146 (442)
Q Consensus 69 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~ 146 (442)
....++++.+..+......+..+..+++|+.|.+.++... .++.. .|.++++|++|++++|.+..+ |.
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~----------~~~~l~~L~~L~Ls~n~l~~~~~~ 97 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN----------TFRGLSSLIILKLDYNQFLQLETG 97 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT----------TTTTCTTCCEEECTTCTTCEECTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc----------cccccccCCEEeCCCCccCccChh
Confidence 4467889998888777666778889999999999988653 33333 235689999999999988766 67
Q ss_pred hhhcccccceeccccccccc-CCcc--ccccCCCcEEeecCcccccc-chh-hhcccccceeeeccccccccccCCCCCC
Q 013456 147 TIGKLQLLRYVGLRRTFIDS-IPKS--LGDLHSLETLDMKHTNITSL-PKS-IWKVKTLRHLYLNDIHLQMSVQKPFVKP 221 (442)
Q Consensus 147 ~l~~l~~L~~L~L~~~~i~~-lp~~--~~~l~~L~~L~L~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 221 (442)
.++++++|++|++++|.+.. +|.. ++++++|++|++++|.++.+ |.. +.++++|++|++++|.+.+..+. .+.
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~ 175 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE--DLL 175 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT--TSG
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh--hhh
Confidence 89999999999999999875 3444 88999999999999999966 555 78999999999999998765543 354
Q ss_pred CC--cccccccccccCCCCCchhh--------hccccCcceeeEEeeccccchhHHhhcC--------------------
Q 013456 222 SL--TNLRTLWGLSIGKKSPPLNW--------LENLSDLKNLGLICNIASLGKITNLIQG-------------------- 271 (442)
Q Consensus 222 ~l--~~L~~L~~~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~~~~~~~~~l~~-------------------- 271 (442)
.+ .+|+.|++..+......+.. +..+++|+.|++++|.+. ...+..+..
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK-ESMAKRFFDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC-HHHHHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccc-ccchhhhhccccccceeeEeecccccccc
Confidence 44 56666666665544322211 224466777777776554 333332221
Q ss_pred -------------------CcccccceeeccccccCCccccccccCCcCCCceEEeccccCC---CcccccCCCceeEEE
Q 013456 272 -------------------LTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFT 329 (442)
Q Consensus 272 -------------------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~ 329 (442)
.++|+.|++++|....... ..+..+++|+.|+++++... +..+..+ ++|+.|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~ 329 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK----SVFSHFTDLEQLTLAQNEINKIDDNAFWGL-THLLKLN 329 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT----TTTTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEE
T ss_pred ccchhhhccCcccccccccccCceEEEecCccccccch----hhcccCCCCCEEECCCCcccccChhHhcCc-ccCCEEE
Confidence 2467777777776654332 23677899999999987432 3345555 8999999
Q ss_pred EeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEe-CCCccccccEEEeccCCC
Q 013456 330 LSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTI-EEGAMTALEKLEIRNCPK 408 (442)
Q Consensus 330 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~ 408 (442)
+++|.+++..+..++.+++|+.|++++|.+.+..+ ..+..+++|++|++++|. ++.++. ....+++|+.|++++|+.
T Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCccCCcChhHhcCcccCCEEECCCCcccccCh-hhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCc
Confidence 99999987778889999999999999999875444 348889999999999974 555554 347899999999999988
Q ss_pred CCC
Q 013456 409 LKM 411 (442)
Q Consensus 409 l~~ 411 (442)
...
T Consensus 408 ~~~ 410 (455)
T 3v47_A 408 DCS 410 (455)
T ss_dssp CCC
T ss_pred ccC
Confidence 765
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.6e-30 Score=264.61 Aligned_cols=330 Identities=14% Similarity=0.077 Sum_probs=219.2
Q ss_pred CCccccccceeEEEEeecCCC------------------CCCchhhhHHHHHHhhhcCceeEEEecCCCC-CCCChhhhh
Q 013456 89 SDKKQFEYLHSYLFFVKRKGG------------------KPAGEFGNLLKMVIAIRGYRLLRVLDLEDVY-KPVLPETIG 149 (442)
Q Consensus 89 ~~~~~~~~lr~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l~~~l~ 149 (442)
..+..+++|+.|.+.++.... +|.. +.|.++++|++|++++|. .+.+|..++
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~---------l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE---------LSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC---------CCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh---------hhhccCCCCCEEECcCCCCCccChHHHh
Confidence 456678888888888876554 3332 112368888999998774 677888888
Q ss_pred cccccceecccccc-ccc--CCccccccC-------CCcEEeecCccccccch--hhhcccccceeeeccccccccccCC
Q 013456 150 KLQLLRYVGLRRTF-IDS--IPKSLGDLH-------SLETLDMKHTNITSLPK--SIWKVKTLRHLYLNDIHLQMSVQKP 217 (442)
Q Consensus 150 ~l~~L~~L~L~~~~-i~~--lp~~~~~l~-------~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~ 217 (442)
++++|++|++++|. +.. +|..++++. +|++|++++|.++.+|. .++++++|++|++++|.+. .+|
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-- 589 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-- 589 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC--
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch--
Confidence 88889999998887 763 787776665 88999998888888888 8888888999999888877 555
Q ss_pred CCCCCCcccccccccccCCCCCchhhhccccC-cceeeEEeeccccchhHHhhcCCc--ccccceeeccccccCCcccc-
Q 013456 218 FVKPSLTNLRTLWGLSIGKKSPPLNWLENLSD-LKNLGLICNIASLGKITNLIQGLT--SLESLRLRSINDFYVPSDLA- 293 (442)
Q Consensus 218 ~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~- 293 (442)
.++.+++|+.|++..+... .++..+..+++ |+.|++++|.+. .+|..+..++ +|+.|++++|.+....+.+.
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCccccchh
Confidence 4788888888888888776 67777888888 888888888653 5666665554 38888888877654322211
Q ss_pred ccccCCcCCCceEEeccccCC--CcccccCCCceeEEEEeccCCCCCCcccccC--------CCCCcEEEeCcccccCcc
Q 013456 294 IGSLNNHKELKELYLLGRLPG--PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQ--------LRELKALRLFAHSYIGEK 363 (442)
Q Consensus 294 ~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--------l~~L~~L~l~~~~~~~~~ 363 (442)
.......++|+.|+++++... +..+...+++|+.|++++|.++ .++..+.. +++|+.|+|++|.+.. .
T Consensus 666 ~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-l 743 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-L 743 (876)
T ss_dssp CTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-C
T ss_pred hhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCcc-c
Confidence 001112346777777665322 2222212256777777777666 33332222 2367777777776652 2
Q ss_pred cccCC--CCCCcccEEEecccCCcceEEeCCCccccccEEEecc------CCCCCC-CccCCCCCCCcEEEecccccccc
Q 013456 364 MTCGN--GGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRN------CPKLKM-PTELTKLSNLKELTLVKKVLKMK 434 (442)
Q Consensus 364 ~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~------c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~ 434 (442)
+.. + ..+++|+.|++++|. +..++.....+++|+.|++++ |..... |..+.++++|++|+|++|++..+
T Consensus 744 p~~-l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I 821 (876)
T 4ecn_A 744 SDD-FRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV 821 (876)
T ss_dssp CGG-GSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred hHH-hhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCcc
Confidence 222 3 366777777777653 334555556667777777765 333333 66666777777777777777767
Q ss_pred CCCC
Q 013456 435 PEDA 438 (442)
Q Consensus 435 p~~~ 438 (442)
|...
T Consensus 822 p~~l 825 (876)
T 4ecn_A 822 DEKL 825 (876)
T ss_dssp CSCC
T ss_pred CHhh
Confidence 6653
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=6.5e-30 Score=243.46 Aligned_cols=308 Identities=18% Similarity=0.160 Sum_probs=252.2
Q ss_pred cccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChh-hhhcccccceecccccccccCC-c
Q 013456 92 KQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIP-K 169 (442)
Q Consensus 92 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp-~ 169 (442)
..+++++.+.+.++....+|...+ ..+++|++|+++++.+..++. .+..+++|++|++++|.+..+| .
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~----------~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 111 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALL----------DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 111 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHH----------HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccCCceEEEecCCchhhCChhHh----------cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH
Confidence 457899999999887777765433 458999999999998888765 8899999999999999998885 5
Q ss_pred cccccCCCcEEeecCccccccchhh-hcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhcccc
Q 013456 170 SLGDLHSLETLDMKHTNITSLPKSI-WKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLS 248 (442)
Q Consensus 170 ~~~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~ 248 (442)
.++++++|++|++++|.++.+|..+ .++++|++|++++|.+....+. .++.+++|+.|++.++..... .++.++
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~---~~~~l~ 186 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD--TFQATTSLQNLQLSSNRLTHV---DLSLIP 186 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT--TTSSCTTCCEEECCSSCCSBC---CGGGCT
T ss_pred HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh--hccCCCCCCEEECCCCcCCcc---cccccc
Confidence 5899999999999999999998875 7899999999999998754443 588999999999988876543 367789
Q ss_pred CcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccC-CCcccccCCCceeE
Q 013456 249 DLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLP-GPLKLHELPPNLRI 327 (442)
Q Consensus 249 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~L~~ 327 (442)
+|+.|+++.|... . +....+|+.|++++|.....+.. ..++|+.|+++++.. ...++..+ ++|+.
T Consensus 187 ~L~~L~l~~n~l~--~----~~~~~~L~~L~l~~n~l~~~~~~-------~~~~L~~L~l~~n~l~~~~~l~~l-~~L~~ 252 (390)
T 3o6n_A 187 SLFHANVSYNLLS--T----LAIPIAVEELDASHNSINVVRGP-------VNVELTILKLQHNNLTDTAWLLNY-PGLVE 252 (390)
T ss_dssp TCSEEECCSSCCS--E----EECCSSCSEEECCSSCCCEEECC-------CCSSCCEEECCSSCCCCCGGGGGC-TTCSE
T ss_pred ccceeeccccccc--c----cCCCCcceEEECCCCeeeecccc-------ccccccEEECCCCCCcccHHHcCC-CCccE
Confidence 9999999988553 1 23456899999999887665432 247899999988743 34455555 89999
Q ss_pred EEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCC
Q 013456 328 FTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCP 407 (442)
Q Consensus 328 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 407 (442)
|++++|.+++..+..+..+++|+.|++++|.+.+. ......+++|++|++++| .+..++...+.+++|+.|++++|.
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred EECCCCcCCCcChhHccccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc
Confidence 99999999877788899999999999999988653 233578999999999997 455666666778999999999999
Q ss_pred CCCCCccCCCCCCCcEEEeccccccc
Q 013456 408 KLKMPTELTKLSNLKELTLVKKVLKM 433 (442)
Q Consensus 408 ~l~~p~~l~~l~~L~~L~l~~n~l~~ 433 (442)
+...+ +..+++|++|++++|++..
T Consensus 330 i~~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 330 IVTLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred cceeC--chhhccCCEEEcCCCCccc
Confidence 87765 6788999999999999864
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=5.5e-30 Score=263.20 Aligned_cols=343 Identities=13% Similarity=0.070 Sum_probs=270.5
Q ss_pred CCceeEEEEecCCCCCC-----------------CCCCcc--ccccceeEEEEeec-CCCCCCchhhhHHHHHHhhhcCc
Q 013456 70 DLCVCRLAEHLDNLSSI-----------------TPSDKK--QFEYLHSYLFFVKR-KGGKPAGEFGNLLKMVIAIRGYR 129 (442)
Q Consensus 70 ~~~~~~l~~~~~~~~~~-----------------~~~~~~--~~~~lr~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 129 (442)
-...+.+.+..+..... .+..+. .+++|+.|.+.++. .+.+| . .+.+++
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~----------~l~~L~ 515 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-D----------FLYDLP 515 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-G----------GGGGCS
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-H----------HHhCCC
Confidence 34678888877776551 334434 89999999999885 44444 2 235689
Q ss_pred eeEEEecCCCC-CC--CChhhhhccc-------ccceecccccccccCCc--cccccCCCcEEeecCccccccchhhhcc
Q 013456 130 LLRVLDLEDVY-KP--VLPETIGKLQ-------LLRYVGLRRTFIDSIPK--SLGDLHSLETLDMKHTNITSLPKSIWKV 197 (442)
Q Consensus 130 ~L~~L~l~~~~-~~--~l~~~l~~l~-------~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~l~~lp~~i~~l 197 (442)
+|++|++++|. +. .+|..+++++ +|++|++++|.+..+|. .++++++|++|++++|.++.+| .++.+
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L 594 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTN 594 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTT
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCC
Confidence 99999999986 76 4888888877 99999999999999999 8999999999999999999999 89999
Q ss_pred cccceeeeccccccccccCCCCCCCCcc-cccccccccCCCCCchhhhccccC--cceeeEEeeccccchhH---Hhhc-
Q 013456 198 KTLRHLYLNDIHLQMSVQKPFVKPSLTN-LRTLWGLSIGKKSPPLNWLENLSD--LKNLGLICNIASLGKIT---NLIQ- 270 (442)
Q Consensus 198 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~-L~~L~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~---~~l~- 270 (442)
++|+.|++++|.+. .+|. .+..+++ |+.|++.++... .++..+..++. |+.|++++|.+. +.++ ..+.
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~--~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~-g~ip~l~~~l~~ 669 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPE--DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIG-SEGRNISCSMDD 669 (876)
T ss_dssp SEESEEECCSSCCS-CCCT--TSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTT-TTSSSCSSCTTT
T ss_pred CcceEEECcCCccc-cchH--HHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCC-Cccccchhhhcc
Confidence 99999999999987 5554 5889999 999999998876 56666666654 999999999765 3222 2222
Q ss_pred -CCcccccceeeccccccCCccccccccCCcCCCceEEeccccCC--CcccccCC-------CceeEEEEeccCCCCCCc
Q 013456 271 -GLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPG--PLKLHELP-------PNLRIFTLSLSYLSEDPM 340 (442)
Q Consensus 271 -~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~-------~~L~~L~l~~~~~~~~~~ 340 (442)
.+.+|+.|++++|.+...+... +..+++|+.|+++++... +....... ++|+.|++++|.++ .++
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~----~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp 744 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTEL----FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS 744 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHH----HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCC
T ss_pred ccCCCcCEEEccCCcCCccCHHH----HccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cch
Confidence 3458999999999887655432 346789999999987422 22222221 28999999999998 667
Q ss_pred cccc--CCCCCcEEEeCcccccCcccccCCCCCCcccEEEecc------cCCcceEEeCCCccccccEEEeccCCCCCCC
Q 013456 341 PVLG--QLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWV------LKELKEWTIEEGAMTALEKLEIRNCPKLKMP 412 (442)
Q Consensus 341 ~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p 412 (442)
..+. .+++|+.|+|++|.+.+ .+ ..+..+++|+.|++++ |.....++...+.+++|+.|++++|.+..+|
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N~L~~-lp-~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip 822 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYNCFSS-FP-TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVD 822 (876)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS-CC-CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCC
T ss_pred HHhhhccCCCcCEEEeCCCCCCc-cc-hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccC
Confidence 7776 89999999999999986 33 3367899999999987 4445567777788999999999999996678
Q ss_pred ccCCCCCCCcEEEeccccccccCCCC
Q 013456 413 TELTKLSNLKELTLVKKVLKMKPEDA 438 (442)
Q Consensus 413 ~~l~~l~~L~~L~l~~n~l~~~p~~~ 438 (442)
..+. ++|+.|+|++|++..++...
T Consensus 823 ~~l~--~~L~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 823 EKLT--PQLYILDIADNPNISIDVTS 846 (876)
T ss_dssp SCCC--SSSCEEECCSCTTCEEECGG
T ss_pred Hhhc--CCCCEEECCCCCCCccChHH
Confidence 8765 69999999999998876543
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.1e-29 Score=259.56 Aligned_cols=132 Identities=18% Similarity=0.188 Sum_probs=91.5
Q ss_pred CCceeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChh-hh
Q 013456 70 DLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPE-TI 148 (442)
Q Consensus 70 ~~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l 148 (442)
...++++.+..+.........+..+++|+.|.+.++.....+...+ .++++|++|++++|.+..+|. .+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----------~~l~~L~~L~L~~n~l~~l~~~~~ 93 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC----------QKLPMLKVLNLQHNELSQLSDKTF 93 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH----------HHCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHH----------hcccCcCEEECCCCccCccChhhh
Confidence 3567777777776665566667778888888887776555544433 346778888888777777766 47
Q ss_pred hcccccceecccccccccCC-ccccccCCCcEEeecCccccc-cchhhhcccccceeeecccccc
Q 013456 149 GKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITS-LPKSIWKVKTLRHLYLNDIHLQ 211 (442)
Q Consensus 149 ~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~ 211 (442)
+++++|++|++++|.+..+| ..++++++|++|++++|.++. .|..+.++++|++|++++|.+.
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence 77778888888877777665 457777777777777777763 3445666677777777666554
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2.8e-29 Score=250.53 Aligned_cols=341 Identities=16% Similarity=0.102 Sum_probs=205.4
Q ss_pred eEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-hhhhhccc
Q 013456 74 CRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-PETIGKLQ 152 (442)
Q Consensus 74 ~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~l~ 152 (442)
+++.+.......++... .++++.|.+.++.....+... |.++++|++|++++|.+..+ |..+.+++
T Consensus 34 ~~l~ls~~~L~~ip~~~---~~~L~~L~Ls~N~i~~~~~~~----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 100 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL---PPRTKALSLSQNSISELRMPD----------ISFLSELRVLRLSHNRIRSLDFHVFLFNQ 100 (562)
T ss_dssp CEEECTTSCCCSCCTTS---CTTCCEEECCSSCCCCCCGGG----------TTTCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred cEEEcCCCCCccCCCCC---CCCcCEEECCCCCccccChhh----------hccCCCccEEECCCCCCCcCCHHHhCCCC
Confidence 45555444444333322 278888888887766665443 35578888888888887776 55788888
Q ss_pred ccceecccccccccCCccccccCCCcEEeecCcccccc--chhhhcccccceeeeccccccccccCCCCCCCCccc--cc
Q 013456 153 LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSL--PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNL--RT 228 (442)
Q Consensus 153 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L--~~ 228 (442)
+|++|++++|.+..+|.. .+++|++|++++|.++.+ |..++++++|++|++++|.+... .+..+++| +.
T Consensus 101 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~ 173 (562)
T 3a79_B 101 DLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSC 173 (562)
T ss_dssp TCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEE
T ss_pred CCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-----chhhhhhceeeE
Confidence 888888888888888876 788888888888888864 46788888888888888877531 24555555 77
Q ss_pred ccccccCC--CCCchhhhc--------------------------cccCcceeeEEee----------------------
Q 013456 229 LWGLSIGK--KSPPLNWLE--------------------------NLSDLKNLGLICN---------------------- 258 (442)
Q Consensus 229 L~~~~~~~--~~~~~~~l~--------------------------~l~~L~~L~l~~~---------------------- 258 (442)
|++..+.. ....+..+. .+++|+.++++.|
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence 77766654 222222222 2333444444433
Q ss_pred ------ccccc---hhHHhhcCCcccccceeeccccc-cCCcccc--------------------------c--------
Q 013456 259 ------IASLG---KITNLIQGLTSLESLRLRSINDF-YVPSDLA--------------------------I-------- 294 (442)
Q Consensus 259 ------~~~~~---~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~--------------------------~-------- 294 (442)
..... ..+..+ ..++|+.|++++|... ..|.... +
T Consensus 254 L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred EEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence 11100 111111 1236666666666544 2222110 0
Q ss_pred --------------cccCCcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCC--CcccccCCCCCcEEEeC
Q 013456 295 --------------GSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSED--PMPVLGQLRELKALRLF 355 (442)
Q Consensus 295 --------------~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~ 355 (442)
.....+++|++|+++++... +..+..+ ++|+.|++++|.+++. .+..++.+++|+.|+++
T Consensus 333 L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL-KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSC-SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred ceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhccc-CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 00034455566666554211 2233333 5666666666655532 12345566666666666
Q ss_pred cccccCcccccCCCCCCcccEEEecccCCcceEEeCCCcc-ccccEEEeccCCCCCCCccCCCCCCCcEEEecccccccc
Q 013456 356 AHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAM-TALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMK 434 (442)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~ 434 (442)
+|.+.+..+...+..+++|++|++++|......+ ..+ ++|+.|++++|.+..+|.++..+++|++|++++|+++.+
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l 488 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---RCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV 488 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG---SSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCC
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchh---hhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCC
Confidence 6665543443335556666666666654322222 223 688888888888777788778889999999999999888
Q ss_pred CCCCC
Q 013456 435 PEDAW 439 (442)
Q Consensus 435 p~~~~ 439 (442)
|+..+
T Consensus 489 ~~~~~ 493 (562)
T 3a79_B 489 PDGVF 493 (562)
T ss_dssp CTTST
T ss_pred CHHHH
Confidence 88633
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=6.5e-30 Score=257.70 Aligned_cols=133 Identities=21% Similarity=0.124 Sum_probs=112.9
Q ss_pred ccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-hhhhhcccccceecccccccccC-Ccccc
Q 013456 95 EYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-PETIGKLQLLRYVGLRRTFIDSI-PKSLG 172 (442)
Q Consensus 95 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~i~~l-p~~~~ 172 (442)
++++.|.+.++.....+... |.++++|++|++++|.+..+ |..|+++++|++|++++|.+..+ |..++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~----------~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYS----------FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp TTCCEEECTTSCCCEECTTT----------TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred CCcCEEECCCCCcCEeChhh----------ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence 78999999988766665543 35689999999999988887 55799999999999999999888 88899
Q ss_pred ccCCCcEEeecCccccccc-hhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCC
Q 013456 173 DLHSLETLDMKHTNITSLP-KSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKS 238 (442)
Q Consensus 173 ~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~ 238 (442)
++++|++|++++|.++.++ ..++++++|++|++++|.+.+. ..|..++++++|++|++.++....
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCC-CCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccce-echHhHhhcCCCCEEEccCCccee
Confidence 9999999999999999776 6799999999999999988642 223368999999999998876654
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=5.2e-29 Score=259.62 Aligned_cols=134 Identities=22% Similarity=0.196 Sum_probs=98.4
Q ss_pred CCCceeEEEEecCCCCCCCCCCccccccceeEEEEeec-CCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-hh
Q 013456 69 SDLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKR-KGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-PE 146 (442)
Q Consensus 69 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~ 146 (442)
....++++.+..+.........+..+++|+.|.+.++. ...++.. .|.++++|++|+|++|.+..+ |.
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~----------~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE----------AFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTT----------TTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHH----------HhcCCCCCCEEECCCCcCcccCHh
Confidence 45678888888777766667778888888888888773 2333232 235578888888888877665 66
Q ss_pred hhhcccccceeccccccccc-CCcc--ccccCCCcEEeecCcccccc--chhhhcccccceeeeccccccc
Q 013456 147 TIGKLQLLRYVGLRRTFIDS-IPKS--LGDLHSLETLDMKHTNITSL--PKSIWKVKTLRHLYLNDIHLQM 212 (442)
Q Consensus 147 ~l~~l~~L~~L~L~~~~i~~-lp~~--~~~l~~L~~L~L~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~ 212 (442)
.++++++|++|++++|.+.. +|.. ++++++|++|++++|.++.+ +..++++++|++|++++|.+.+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 78888888888888887764 4544 77888888888888887744 3567788888888888876643
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=2e-28 Score=238.60 Aligned_cols=326 Identities=19% Similarity=0.190 Sum_probs=212.6
Q ss_pred CceeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhc
Q 013456 71 LCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGK 150 (442)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~ 150 (442)
..++++.+........ ..+..+++|+.|.+.++.....+. +..+++|++|++++|.+..++. +++
T Consensus 46 ~~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n~l~~~~~------------~~~l~~L~~L~l~~n~l~~~~~-~~~ 110 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP------------LKNLTKLVDILMNNNQIADITP-LAN 110 (466)
T ss_dssp HTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG------------GTTCTTCCEEECCSSCCCCCGG-GTT
T ss_pred ccccEEecCCCCCccC--cchhhhcCCCEEECCCCccCCchh------------hhccccCCEEECCCCccccChh-hcC
Confidence 3566777655544332 235678888888888776544432 3567888888888888877776 888
Q ss_pred ccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee---------------------cccc
Q 013456 151 LQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL---------------------NDIH 209 (442)
Q Consensus 151 l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l---------------------~~~~ 209 (442)
+++|++|++++|.+..+|. ++++++|++|++++|.+..++. +..+++|++|++ ++|.
T Consensus 111 l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 188 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCc
Confidence 8888888888888887765 7888888888888887776653 455555555544 4444
Q ss_pred ccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCC
Q 013456 210 LQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVP 289 (442)
Q Consensus 210 ~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 289 (442)
+... + .+..+++|+.|++.++......+ ++.+++|+.|++++|... .+ ..+..+++|+.|++++|.....+
T Consensus 189 l~~~-~---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~--~~-~~l~~l~~L~~L~l~~n~l~~~~ 259 (466)
T 1o6v_A 189 VSDI-S---VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK--DI-GTLASLTNLTDLDLANNQISNLA 259 (466)
T ss_dssp CCCC-G---GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC--CC-GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCCC-h---hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc--cc-hhhhcCCCCCEEECCCCccccch
Confidence 3321 1 13444555555554444333222 445555555555555432 11 23455566666666665544322
Q ss_pred ccccccccCCcCCCceEEeccccCC-CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCC
Q 013456 290 SDLAIGSLNNHKELKELYLLGRLPG-PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGN 368 (442)
Q Consensus 290 ~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 368 (442)
. +..+++|+.|+++++... ...+..+ ++|+.|++++|.+++.. .++.+++|+.|++++|.+.+..+ +
T Consensus 260 ~------~~~l~~L~~L~l~~n~l~~~~~~~~l-~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~---~ 327 (466)
T 1o6v_A 260 P------LSGLTKLTELKLGANQISNISPLAGL-TALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP---V 327 (466)
T ss_dssp G------GTTCTTCSEEECCSSCCCCCGGGTTC-TTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGG---G
T ss_pred h------hhcCCCCCEEECCCCccCccccccCC-CccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCchh---h
Confidence 1 455677777777766322 2223333 67888888888776532 27778888888888887766443 4
Q ss_pred CCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCCC
Q 013456 369 GGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPED 437 (442)
Q Consensus 369 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~~ 437 (442)
..+++|+.|++++|. +..+ .....+++|+.|++++|.....+. +..+++|++|++++|+++.+|..
T Consensus 328 ~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNK-VSDV-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp GGCTTCCEEECCSSC-CCCC-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBC
T ss_pred ccCccCCEeECCCCc-cCCc-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchh
Confidence 578888888888874 4444 245678899999999998877743 78899999999999998887654
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=8.7e-29 Score=231.96 Aligned_cols=286 Identities=19% Similarity=0.170 Sum_probs=238.4
Q ss_pred hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456 126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL 205 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 205 (442)
..+++|++|+++++.+..++. +..+++|++|++++|.+..+|. +..+++|++|++++|.++.+| .+..+++|++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 457999999999999988864 8899999999999999999877 999999999999999999876 5899999999999
Q ss_pred ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND 285 (442)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 285 (442)
++|.+... + .+..+++|+.|++.++......+. +..+++|+.|++++|... ..+. +..+++|+.|++++|..
T Consensus 118 ~~n~i~~~-~---~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~--~~~~-~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 118 NEDNISDI-S---PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK--DVTP-IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp TTSCCCCC-G---GGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC--CCGG-GGGCTTCSEEECTTSCC
T ss_pred cCCcccCc-h---hhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC--Cchh-hccCCCCCEEEccCCcc
Confidence 99988743 2 278999999999998876655444 899999999999988654 3333 77899999999999876
Q ss_pred ccCCccccccccCCcCCCceEEeccccCCC-cccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccc
Q 013456 286 FYVPSDLAIGSLNNHKELKELYLLGRLPGP-LKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKM 364 (442)
Q Consensus 286 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 364 (442)
...+. +..+++|+.+++.++.... ..+..+ ++|+.|++++|.+++..+ +..+++|+.|++++|.+.+.
T Consensus 190 ~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-- 258 (347)
T 4fmz_A 190 EDISP------LASLTSLHYFTAYVNQITDITPVANM-TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-- 258 (347)
T ss_dssp CCCGG------GGGCTTCCEEECCSSCCCCCGGGGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--
T ss_pred ccccc------ccCCCccceeecccCCCCCCchhhcC-CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--
Confidence 65433 5678899999999874332 224444 899999999999885433 89999999999999988763
Q ss_pred ccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCC
Q 013456 365 TCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPE 436 (442)
Q Consensus 365 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~ 436 (442)
..+..+++|+.|++++|. +..++ ....+++|+.|++++|..... |..+..+++|++|++++|+++.+++
T Consensus 259 -~~~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 259 -NAVKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp -GGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred -hhHhcCCCcCEEEccCCc-cCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 237789999999999974 55553 356789999999999998876 7778999999999999999998876
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=7.8e-29 Score=246.91 Aligned_cols=353 Identities=15% Similarity=0.132 Sum_probs=234.2
Q ss_pred CceeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhh-hh
Q 013456 71 LCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPET-IG 149 (442)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-l~ 149 (442)
..++++.+..+......+..+..+++|+.|.+.++.....+... |.++++|++|++++|.+..++.. ++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----------~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA----------FYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT----------TTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh----------ccccccCCEEECCCCccCccCHHHhc
Confidence 46778887777766556667788889999988887665555432 35578899999998888777664 88
Q ss_pred cccccceeccccccccc--CCccccccCCCcEEeecCcc-ccccc-hhhhcccccceeeeccccccccccCCCCCCCCcc
Q 013456 150 KLQLLRYVGLRRTFIDS--IPKSLGDLHSLETLDMKHTN-ITSLP-KSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTN 225 (442)
Q Consensus 150 ~l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 225 (442)
++++|++|++++|.+.. .|..++++++|++|++++|. +..+| ..+.++++|++|++++|.+.+..+. .++.+++
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~ 173 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ--SLKSIRD 173 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT--TTTTCSE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh--hhhcccc
Confidence 88999999999988874 46678888999999998887 55666 4688889999999998888765554 5778888
Q ss_pred cccccccccCCCCCchhhhccccCcceeeEEeeccccc------------------------------hhHHhhcCCccc
Q 013456 226 LRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLG------------------------------KITNLIQGLTSL 275 (442)
Q Consensus 226 L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~------------------------------~~~~~l~~l~~L 275 (442)
|+.|++..+.........+..+++|+.|++++|..... .++..+..+++|
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 88887766654332222234567777777776654311 111222333445
Q ss_pred ccceeeccccccCCc--cccccccCCcCCCceEEeccccCCCc-------ccccCCCceeEEEEeccCCCCCCcccc-cC
Q 013456 276 ESLRLRSINDFYVPS--DLAIGSLNNHKELKELYLLGRLPGPL-------KLHELPPNLRIFTLSLSYLSEDPMPVL-GQ 345 (442)
Q Consensus 276 ~~L~l~~~~~~~~~~--~~~~~~~~~~~~L~~l~l~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~ 345 (442)
+.+++++|....... ......+....+++.+.+.+...... ......++|+.|++++|.+. .+|..+ ..
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~ 332 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQH 332 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHH
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhc
Confidence 555555444322111 01112334456666666655421110 00112357888888888776 344444 56
Q ss_pred CCCCcEEEeCcccccCcccc--cCCCCCCcccEEEecccCCcceEE---eCCCccccccEEEeccCCCCCCCccCCCCCC
Q 013456 346 LRELKALRLFAHSYIGEKMT--CGNGGFPQLRVLKLWVLKELKEWT---IEEGAMTALEKLEIRNCPKLKMPTELTKLSN 420 (442)
Q Consensus 346 l~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~ 420 (442)
+++|+.|++++|.+.+..+. ..++.+++|+.|++++|. ++.++ ...+.+++|+.|++++|....+|..+..+++
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence 88888888888887654432 235678888888888864 33332 2345678888888888877766777788888
Q ss_pred CcEEEeccccccccCCC
Q 013456 421 LKELTLVKKVLKMKPED 437 (442)
Q Consensus 421 L~~L~l~~n~l~~~p~~ 437 (442)
|++|++++|.++.+|..
T Consensus 412 L~~L~Ls~N~l~~l~~~ 428 (549)
T 2z81_A 412 MRFLNLSSTGIRVVKTC 428 (549)
T ss_dssp CCEEECTTSCCSCCCTT
T ss_pred ccEEECCCCCcccccch
Confidence 88888888888777664
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=7.2e-29 Score=236.26 Aligned_cols=293 Identities=15% Similarity=0.117 Sum_probs=244.5
Q ss_pred cCceeEEEecCCCCCCCChhh-hhcccccceecccccccccCCc-cccccCCCcEEeecCccccccc-hhhhccccccee
Q 013456 127 GYRLLRVLDLEDVYKPVLPET-IGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLP-KSIWKVKTLRHL 203 (442)
Q Consensus 127 ~~~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L 203 (442)
.++++++|+++++.+..+|.. +..+++|++|++++|.+..++. .++.+++|++|++++|.++.+| ..+.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 368999999999999999875 6889999999999999988864 7899999999999999999765 458899999999
Q ss_pred eeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecc
Q 013456 204 YLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSI 283 (442)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 283 (442)
++++|.+. .++.. .++.+++|++|++.++......+..++.+++|+.|++++|.+.. + .+..+++|+.|++++|
T Consensus 123 ~L~~n~l~-~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~--~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 123 VLERNDLS-SLPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH--V--DLSLIPSLFHANVSYN 196 (390)
T ss_dssp ECCSSCCC-CCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB--C--CGGGCTTCSEEECCSS
T ss_pred ECCCCccC-cCCHH-HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc--c--ccccccccceeecccc
Confidence 99999887 34432 46899999999999998877777789999999999999987652 2 2566789999999987
Q ss_pred ccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcc
Q 013456 284 NDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEK 363 (442)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 363 (442)
..... .....|+.++++++...... ...+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..
T Consensus 197 ~l~~~---------~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~ 264 (390)
T 3o6n_A 197 LLSTL---------AIPIAVEELDASHNSINVVR-GPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 264 (390)
T ss_dssp CCSEE---------ECCSSCSEEECCSSCCCEEE-CCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred ccccc---------CCCCcceEEECCCCeeeecc-ccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC
Confidence 65432 33568999999887533221 22347999999999998853 68899999999999999987654
Q ss_pred cccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCCCCC
Q 013456 364 MTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPEDAW 439 (442)
Q Consensus 364 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~~~~ 439 (442)
+. .+..+++|++|++++| .++.++.....+|+|+.|++++|....+|..+..+++|++|++++|+++.+|...+
T Consensus 265 ~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~ 338 (390)
T 3o6n_A 265 YH-PFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH 338 (390)
T ss_dssp SG-GGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTT
T ss_pred hh-HccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCchhh
Confidence 43 3788999999999996 56778877788999999999999988888888999999999999999999875433
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=6.5e-29 Score=249.24 Aligned_cols=308 Identities=18% Similarity=0.160 Sum_probs=253.2
Q ss_pred cccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChh-hhhcccccceecccccccccCCc-
Q 013456 92 KQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIPK- 169 (442)
Q Consensus 92 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp~- 169 (442)
..+++++.+.+.++....+|...+ ..+++|++|++++|.+..++. .++.+++|++|+|++|.+..+|.
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~----------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 117 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALL----------DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHH----------HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCCCceEEEeeCCCCCCcCHHHH----------ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH
Confidence 357889999998887777776533 448999999999998888765 89999999999999999988865
Q ss_pred cccccCCCcEEeecCccccccchhh-hcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhcccc
Q 013456 170 SLGDLHSLETLDMKHTNITSLPKSI-WKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLS 248 (442)
Q Consensus 170 ~~~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~ 248 (442)
.++++++|++|++++|.++.+|..+ ..+++|++|++++|.+.+..+. .++.+++|+.|++.++..... .++.++
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~---~~~~l~ 192 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD--TFQATTSLQNLQLSSNRLTHV---DLSLIP 192 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT--TTTTCTTCCEEECTTSCCSBC---CGGGCT
T ss_pred HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh--hhhcCCcCcEEECcCCCCCCc---Chhhhh
Confidence 5699999999999999999988874 8999999999999998765443 589999999999998876553 367789
Q ss_pred CcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecccc-CCCcccccCCCceeE
Q 013456 249 DLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRL-PGPLKLHELPPNLRI 327 (442)
Q Consensus 249 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~L~~ 327 (442)
+|+.|++++|.+. .+....+|+.|++++|.+...+.. ..++|+.|+++++. ..+.++..+ ++|+.
T Consensus 193 ~L~~L~l~~n~l~------~l~~~~~L~~L~ls~n~l~~~~~~-------~~~~L~~L~L~~n~l~~~~~l~~l-~~L~~ 258 (597)
T 3oja_B 193 SLFHANVSYNLLS------TLAIPIAVEELDASHNSINVVRGP-------VNVELTILKLQHNNLTDTAWLLNY-PGLVE 258 (597)
T ss_dssp TCSEEECCSSCCS------EEECCTTCSEEECCSSCCCEEECS-------CCSCCCEEECCSSCCCCCGGGGGC-TTCSE
T ss_pred hhhhhhcccCccc------cccCCchhheeeccCCcccccccc-------cCCCCCEEECCCCCCCCChhhccC-CCCCE
Confidence 9999999988554 134456899999999887655433 23689999999874 334556666 89999
Q ss_pred EEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCC
Q 013456 328 FTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCP 407 (442)
Q Consensus 328 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 407 (442)
|++++|.+++..+..++.+++|+.|++++|.+.+. ......+++|+.|++++|. +..++...+.+++|+.|++++|.
T Consensus 259 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE--ECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred EECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC--CcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC
Confidence 99999999887788999999999999999998753 3336779999999999974 55666666789999999999999
Q ss_pred CCCCCccCCCCCCCcEEEeccccccc
Q 013456 408 KLKMPTELTKLSNLKELTLVKKVLKM 433 (442)
Q Consensus 408 ~l~~p~~l~~l~~L~~L~l~~n~l~~ 433 (442)
+...| +..+++|+.|++++|++.+
T Consensus 336 l~~~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 336 IVTLK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred CCCcC--hhhcCCCCEEEeeCCCCCC
Confidence 87765 6788999999999999854
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=2e-29 Score=252.43 Aligned_cols=354 Identities=18% Similarity=0.139 Sum_probs=244.3
Q ss_pred CCCceeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCCh-hh
Q 013456 69 SDLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLP-ET 147 (442)
Q Consensus 69 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~ 147 (442)
....++++.+..+.........+..+++|+.|.+.++....++... |.++++|++|++++|.+..++ ..
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA----------YQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT----------TTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccc----------ccCchhCCEEeCcCCcCCccCHhh
Confidence 3457888988888777667778889999999999988665555443 356899999999999888776 57
Q ss_pred hhcccccceecccccccccCCc-cccccCCCcEEeecCccccc--cchhhhcccccceeeeccccccccccCCCCCCCCc
Q 013456 148 IGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITS--LPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLT 224 (442)
Q Consensus 148 l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 224 (442)
++++++|++|++++|.+..+|. .++++++|++|++++|.++. +|..++++++|++|++++|.+....+. .++.++
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~ 173 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLH 173 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG--GGHHHH
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH--Hccchh
Confidence 9999999999999999998875 68999999999999999984 799999999999999999988754332 355555
Q ss_pred cc----ccccccccCCCC--------------------------------------------------------------
Q 013456 225 NL----RTLWGLSIGKKS-------------------------------------------------------------- 238 (442)
Q Consensus 225 ~L----~~L~~~~~~~~~-------------------------------------------------------------- 238 (442)
+| +.+++..+....
T Consensus 174 ~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 253 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253 (570)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred ccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence 55 444444333221
Q ss_pred -------------------CchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCcccccc----
Q 013456 239 -------------------PPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIG---- 295 (442)
Q Consensus 239 -------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~---- 295 (442)
..+..+..+++|+.|+++++.. ..++..+..+ +|+.|++++|.....+... +.
T Consensus 254 l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l--~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~-l~~L~~ 329 (570)
T 2z63_A 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNF-GWQHLELVNCKFGQFPTLK-LKSLKR 329 (570)
T ss_dssp GGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE--CSCCBCCSCC-CCSEEEEESCBCSSCCBCB-CSSCCE
T ss_pred ccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc--hhhhhhhccC-CccEEeeccCcccccCccc-ccccCE
Confidence 1123344566677777766643 2445445544 5556665555444322210 00
Q ss_pred ------------ccCCcCCCceEEeccccCC----------------------------CcccccCCCceeEEEEeccCC
Q 013456 296 ------------SLNNHKELKELYLLGRLPG----------------------------PLKLHELPPNLRIFTLSLSYL 335 (442)
Q Consensus 296 ------------~~~~~~~L~~l~l~~~~~~----------------------------~~~~~~~~~~L~~L~l~~~~~ 335 (442)
....+++|+.|+++++... +..+..+ ++|+.|++++|.+
T Consensus 330 L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l-~~L~~L~l~~n~l 408 (570)
T 2z63_A 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL-EQLEHLDFQHSNL 408 (570)
T ss_dssp EEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETC-TTCCEEECTTSEE
T ss_pred EeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccccccc-CCCCEEEccCCcc
Confidence 0023445555555443211 0112222 4556666665555
Q ss_pred CCCCc-ccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCc-ceEEeCCCccccccEEEeccCCCCCC-C
Q 013456 336 SEDPM-PVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKEL-KEWTIEEGAMTALEKLEIRNCPKLKM-P 412 (442)
Q Consensus 336 ~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~l~~c~~l~~-p 412 (442)
.+..+ ..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|... ..++...+.+++|+.|++++|..... |
T Consensus 409 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp ESCTTSCTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred ccccchhhhhcCCCCCEEeCcCCcccccchh-hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence 44333 3566677777777777766543332 3667888888888887544 25666677889999999999988877 8
Q ss_pred ccCCCCCCCcEEEeccccccccCCCCCC
Q 013456 413 TELTKLSNLKELTLVKKVLKMKPEDAWP 440 (442)
Q Consensus 413 ~~l~~l~~L~~L~l~~n~l~~~p~~~~~ 440 (442)
..+..+++|++|++++|+++.+|+..+.
T Consensus 488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 515 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQLKSVPDGIFD 515 (570)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred hhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence 8889999999999999999999887553
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=4.3e-28 Score=236.26 Aligned_cols=311 Identities=19% Similarity=0.165 Sum_probs=203.5
Q ss_pred cccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccc
Q 013456 92 KQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSL 171 (442)
Q Consensus 92 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~ 171 (442)
..+++++.|.+.++....++. +..+++|++|++++|.+..++. +.++++|++|++++|.+..++. +
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~------------~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~ 108 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDG------------VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-L 108 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTT------------GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred hHhccccEEecCCCCCccCcc------------hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-h
Confidence 357889999888776554442 3568999999999999999887 9999999999999999998877 9
Q ss_pred cccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcc
Q 013456 172 GDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLK 251 (442)
Q Consensus 172 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~ 251 (442)
+++++|++|++++|.++.++. +.++++|++|++++|.+... + .++.+++|+.|++.. .... . ..++.+++|+
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~---~~~~l~~L~~L~l~~-~~~~-~-~~~~~l~~L~ 180 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDI-S---ALSGLTSLQQLSFGN-QVTD-L-KPLANLTTLE 180 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCC-G---GGTTCTTCSEEEEEE-SCCC-C-GGGTTCTTCC
T ss_pred cCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCC-h---hhccCCcccEeecCC-cccC-c-hhhccCCCCC
Confidence 999999999999999998876 89999999999999987642 2 256666666666532 1111 1 1255555666
Q ss_pred eeeEEeeccccchhHHhhcCCcccccceeeccccccCCccc----------------cccccCCcCCCceEEeccccCC-
Q 013456 252 NLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDL----------------AIGSLNNHKELKELYLLGRLPG- 314 (442)
Q Consensus 252 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----------------~~~~~~~~~~L~~l~l~~~~~~- 314 (442)
.|++++|... .+ ..+..+++|+.|++++|.....+... ....+..+++|+.|+++++...
T Consensus 181 ~L~l~~n~l~--~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~ 257 (466)
T 1o6v_A 181 RLDISSNKVS--DI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN 257 (466)
T ss_dssp EEECCSSCCC--CC-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC
T ss_pred EEECcCCcCC--CC-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc
Confidence 6666555432 11 12444555555555554433221100 0112344556666666555321
Q ss_pred CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCc
Q 013456 315 PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGA 394 (442)
Q Consensus 315 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 394 (442)
...+..+ ++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.. ..+.. ...
T Consensus 258 ~~~~~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l-~~~~~-~~~ 329 (466)
T 1o6v_A 258 LAPLSGL-TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNI-SDISP-VSS 329 (466)
T ss_dssp CGGGTTC-TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCC-SCCGG-GGG
T ss_pred chhhhcC-CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcC-CCchh-hcc
Confidence 1123333 566666666666654322 6666777777777766654322 45677777777777643 33222 456
Q ss_pred cccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCC
Q 013456 395 MTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPE 436 (442)
Q Consensus 395 ~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~ 436 (442)
+++|+.|++++|..... ..+.++++|+.|++++|+++.+++
T Consensus 330 l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 330 LTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred CccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccch
Confidence 77788888887766554 457778888888888888876654
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=9.9e-29 Score=244.43 Aligned_cols=340 Identities=15% Similarity=0.111 Sum_probs=212.8
Q ss_pred CceeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhc
Q 013456 71 LCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGK 150 (442)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~ 150 (442)
..++++.+..+......+..+..+++|+.|.+.++.....+.. .|.++++|++|++++|.+..+|.. .
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------~~~~l~~L~~L~Ls~N~l~~lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS----------VFKFNQELEYLDLSHNKLVKISCH--P 88 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG----------GGTTCTTCCEEECCSSCCCEEECC--C
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH----------HhhcccCCCEEecCCCceeecCcc--c
Confidence 4566666655554444444455666677776666654433222 224466677777776666666655 5
Q ss_pred ccccceeccccccccc--CCccccccCCCcEEeecCccccccchhhhccccc--ceeeeccccc--cccccCC-------
Q 013456 151 LQLLRYVGLRRTFIDS--IPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTL--RHLYLNDIHL--QMSVQKP------- 217 (442)
Q Consensus 151 l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~~~~------- 217 (442)
+++|++|++++|.+.. +|..++++++|++|++++|.++. ..+..+++| +.|++++|.+ .+..|..
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~ 166 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEE
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccc
Confidence 6677777777766654 35666667777777777666654 334555555 6666666655 2222110
Q ss_pred -----------------CCCCCCcccccccccccCCCC------Cchhhhcc---------------------------c
Q 013456 218 -----------------FVKPSLTNLRTLWGLSIGKKS------PPLNWLEN---------------------------L 247 (442)
Q Consensus 218 -----------------~~~~~l~~L~~L~~~~~~~~~------~~~~~l~~---------------------------l 247 (442)
..+..+++|+.+++..+.... .....++. .
T Consensus 167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~ 246 (520)
T 2z7x_B 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246 (520)
T ss_dssp EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHT
T ss_pred eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhh
Confidence 011224444444443332000 00001111 1
Q ss_pred cCcceeeEEeeccccchhHHhh-----------------------------------------------------cCCcc
Q 013456 248 SDLKNLGLICNIASLGKITNLI-----------------------------------------------------QGLTS 274 (442)
Q Consensus 248 ~~L~~L~l~~~~~~~~~~~~~l-----------------------------------------------------~~l~~ 274 (442)
++|+.|++++|.+. +.+|..+ ..+++
T Consensus 247 ~~L~~L~l~~n~l~-~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~ 325 (520)
T 2z7x_B 247 TTVWYFSISNVKLQ-GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP 325 (520)
T ss_dssp SSCSEEEEEEEEEE-SCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred CcccEEEeeccccc-CccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCc
Confidence 23444444444322 1222211 45667
Q ss_pred cccceeeccccccCCccccccccCCcCCCceEEeccccCCC-----cccccCCCceeEEEEeccCCCCCCcc-cccCCCC
Q 013456 275 LESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGP-----LKLHELPPNLRIFTLSLSYLSEDPMP-VLGQLRE 348 (442)
Q Consensus 275 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~ 348 (442)
|+.|++++|....... ..+..+++|+.|+++++.... ..+..+ ++|+.|++++|.+++.++. .+..+++
T Consensus 326 L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l-~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVF----ENCGHLTELETLILQMNQLKELSKIAEMTTQM-KSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp CCEEECCSSCCCTTTT----TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC-TTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred ccEEEeECCccChhhh----hhhccCCCCCEEEccCCccCccccchHHHhhC-CCCCEEECCCCcCCcccccchhccCcc
Confidence 7777777766554221 246778999999999875331 234555 8999999999999874554 4788999
Q ss_pred CcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCcc-CCCCCCCcEEEec
Q 013456 349 LKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTE-LTKLSNLKELTLV 427 (442)
Q Consensus 349 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~-l~~l~~L~~L~l~ 427 (442)
|+.|++++|.+.+..+.. +. ++|+.|++++| .++.++.....+++|+.|++++|.+..+|.. +..+++|++|+++
T Consensus 401 L~~L~Ls~N~l~~~~~~~-l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRC-LP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCEEECCSSCCCGGGGGS-CC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCcchhhh-hc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECc
Confidence 999999999987655443 21 79999999997 4567777667899999999999998888766 8899999999999
Q ss_pred ccccccc
Q 013456 428 KKVLKMK 434 (442)
Q Consensus 428 ~n~l~~~ 434 (442)
+|++.+-
T Consensus 477 ~N~~~c~ 483 (520)
T 2z7x_B 477 TNPWDCS 483 (520)
T ss_dssp SSCBCCC
T ss_pred CCCCccc
Confidence 9998653
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=5.1e-28 Score=252.13 Aligned_cols=326 Identities=15% Similarity=0.098 Sum_probs=232.8
Q ss_pred ccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCC-CCCCC-hhhhhcccccceecccccccccC-Cc
Q 013456 93 QFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDV-YKPVL-PETIGKLQLLRYVGLRRTFIDSI-PK 169 (442)
Q Consensus 93 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~l-~~~l~~l~~L~~L~L~~~~i~~l-p~ 169 (442)
..++++.|.++++....++... |.++++|++|++++| ....+ |..++++++|++|+|++|.+..+ |.
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~----------~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASS----------FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSS----------CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCcCEEECCCCcCCccChhH----------CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 5588999999988766554443 356899999999988 55566 67899999999999999999877 88
Q ss_pred cccccCCCcEEeecCccccc-cchh--hhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhcc
Q 013456 170 SLGDLHSLETLDMKHTNITS-LPKS--IWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLEN 246 (442)
Q Consensus 170 ~~~~l~~L~~L~L~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~ 246 (442)
.++++++|++|++++|.++. +|.. +.++++|++|++++|.+.+..+ +..++++++|++|++.++......+..++.
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 89999999999999999984 5655 8899999999999999875443 236899999999999998887777777777
Q ss_pred c--cCcceeeEEeeccccchhHHhhcCCcc------cccceeeccccccCCcccc-------------------------
Q 013456 247 L--SDLKNLGLICNIASLGKITNLIQGLTS------LESLRLRSINDFYVPSDLA------------------------- 293 (442)
Q Consensus 247 l--~~L~~L~l~~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~------------------------- 293 (442)
+ ++|+.|+++.|... ...+..+..+.+ |+.|++++|..........
T Consensus 171 l~~~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLY-SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHCSSCCCEECCSBSC-CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred ccCCccceEECCCCccc-cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 7 89999999988665 444444444443 8999998875432111100
Q ss_pred -------ccccCC--cCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccC
Q 013456 294 -------IGSLNN--HKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIG 361 (442)
Q Consensus 294 -------~~~~~~--~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 361 (442)
...+.. .++|+.|+++++... +..+..+ ++|+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 328 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC-CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc
Confidence 001111 256777777665321 2233344 677778887777776666677777778888887777654
Q ss_pred cccccCCCCCCcccEEEecccCCcceEE-eCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCCC
Q 013456 362 EKMTCGNGGFPQLRVLKLWVLKELKEWT-IEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPED 437 (442)
Q Consensus 362 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~~ 437 (442)
..+ ..+..+++|+.|++++|. +..++ .....+++|+.|++++|....++ .+++|++|++++|+++.+|..
T Consensus 329 ~~~-~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~L~~L~l~~N~l~~l~~~ 399 (844)
T 3j0a_A 329 LYS-SNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLVTLPKI 399 (844)
T ss_dssp CCS-CSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCCSCCCS----SCCSCSEEEEESCCCCCCCCC
T ss_pred cCH-HHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCCCCccc----CCCCcchhccCCCCccccccc
Confidence 333 336677777888877764 33332 33456777777777777665543 266777777777777766653
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=4.9e-28 Score=234.18 Aligned_cols=305 Identities=17% Similarity=0.108 Sum_probs=223.8
Q ss_pred CccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCc
Q 013456 90 DKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPK 169 (442)
Q Consensus 90 ~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~ 169 (442)
.+..+++|+.|.+.++.....| .+..+++|++|++++|.+..+| ++.+++|++|++++|.+..+|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~------------~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~- 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT------------GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD- 101 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT------------TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred ChhHcCCCCEEEccCCCcccCh------------hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-
Confidence 3446788888888877655443 1245788999999988888775 788888999999988888875
Q ss_pred cccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccC
Q 013456 170 SLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSD 249 (442)
Q Consensus 170 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~ 249 (442)
++++++|++|++++|.++.+| ++.+++|++|++++|.+.+ ++ ++.+++|+.|++..+...+.. .++.+++
T Consensus 102 -~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~----l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID----VSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC----CTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred -cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec----cccCCcCCEEECCCCCccccc--ccccCCc
Confidence 888889999999998888775 7888899999998888765 22 678888888888887655444 4778888
Q ss_pred cceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEE
Q 013456 250 LKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFT 329 (442)
Q Consensus 250 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~ 329 (442)
|+.|++++|.+. .++ +..+++|+.|++++|..... .+..+++|+.|+++++......+..+ ++|+.|+
T Consensus 172 L~~L~ls~n~l~--~l~--l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~ip~~~l-~~L~~L~ 239 (457)
T 3bz5_A 172 LTTLDCSFNKIT--ELD--VSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTEIDVTPL-TQLTYFD 239 (457)
T ss_dssp CCEEECCSSCCC--CCC--CTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSCCCCTTC-TTCSEEE
T ss_pred CCEEECCCCccc--eec--cccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcccccCcccc-CCCCEEE
Confidence 999999888654 233 67788889999888876554 25567888888888874332224444 7889999
Q ss_pred EeccCCCCCCcccccCCC-------CCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeC--------CCc
Q 013456 330 LSLSYLSEDPMPVLGQLR-------ELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIE--------EGA 394 (442)
Q Consensus 330 l~~~~~~~~~~~~l~~l~-------~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--------~~~ 394 (442)
+++|.+++..+..+..+. +|+.|++++|...+..+ .+.+++|+.|++++|..+..++.. ...
T Consensus 240 l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 240 CSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp CCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred eeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc---ccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence 999888865433333322 34445555555444333 457888999999998877766542 345
Q ss_pred cccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCC
Q 013456 395 MTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPE 436 (442)
Q Consensus 395 ~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~ 436 (442)
+++|+.|++++|.....+ +.++++|+.|++++|+++.+|.
T Consensus 317 ~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~~ 356 (457)
T 3bz5_A 317 NPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSS 356 (457)
T ss_dssp CTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCTT
T ss_pred cccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCccc
Confidence 678888888888877753 7888999999999998887653
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=4.8e-28 Score=242.97 Aligned_cols=293 Identities=15% Similarity=0.101 Sum_probs=245.9
Q ss_pred cCceeEEEecCCCCCCCChhh-hhcccccceecccccccccCC-ccccccCCCcEEeecCccccccch-hhhccccccee
Q 013456 127 GYRLLRVLDLEDVYKPVLPET-IGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHL 203 (442)
Q Consensus 127 ~~~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L 203 (442)
.+.++++|+++++.+..+|.. +..+++|++|++++|.+..+| ..++.+++|++|+|++|.++.+|. .++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 368899999999999998875 688999999999999998875 479999999999999999997765 46899999999
Q ss_pred eeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecc
Q 013456 204 YLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSI 283 (442)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 283 (442)
++++|.+.. +|.. .++.+++|++|++.++......+..++.+++|+.|++++|.+.. + .+..+++|+.|++++|
T Consensus 129 ~L~~n~l~~-l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~--~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 129 VLERNDLSS-LPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH--V--DLSLIPSLFHANVSYN 202 (597)
T ss_dssp ECCSSCCCC-CCTT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB--C--CGGGCTTCSEEECCSS
T ss_pred EeeCCCCCC-CCHH-HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC--c--ChhhhhhhhhhhcccC
Confidence 999998873 3432 46899999999999998888778889999999999999986652 2 2556789999999988
Q ss_pred ccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcc
Q 013456 284 NDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEK 363 (442)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 363 (442)
..... ....+|+.|+++++..... ....+++|+.|++++|.+++ +..++.+++|+.|++++|.+.+..
T Consensus 203 ~l~~l---------~~~~~L~~L~ls~n~l~~~-~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 203 LLSTL---------AIPIAVEELDASHNSINVV-RGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM 270 (597)
T ss_dssp CCSEE---------ECCTTCSEEECCSSCCCEE-ECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE
T ss_pred ccccc---------cCCchhheeeccCCccccc-ccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCC
Confidence 65432 3456899999988753211 22334799999999999886 478999999999999999987654
Q ss_pred cccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCCCCC
Q 013456 364 MTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPEDAW 439 (442)
Q Consensus 364 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~~~~ 439 (442)
+.. +..+++|+.|++++| .+..++...+.+|+|+.|++++|....+|..+..+++|+.|+|++|++..+|...+
T Consensus 271 ~~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 344 (597)
T 3oja_B 271 YHP-FVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH 344 (597)
T ss_dssp SGG-GTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTT
T ss_pred HHH-hcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhc
Confidence 444 889999999999996 56778887788999999999999998888889999999999999999998875543
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.2e-27 Score=238.66 Aligned_cols=338 Identities=15% Similarity=0.109 Sum_probs=246.2
Q ss_pred CCceeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhh
Q 013456 70 DLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIG 149 (442)
Q Consensus 70 ~~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~ 149 (442)
...++++.+..+.........+..+++|+.|.+.++....++.+. |.++++|++|++++|.+..+|..
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----------~~~l~~L~~L~Ls~N~l~~lp~~-- 118 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV----------FLFNQDLEYLDVSHNRLQNISCC-- 118 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT----------TTTCTTCCEEECTTSCCCEECSC--
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH----------hCCCCCCCEEECCCCcCCccCcc--
Confidence 367888998888877666678889999999999998766655443 35589999999999999998877
Q ss_pred cccccceecccccccccCC--ccccccCCCcEEeecCccccccchhhhccccc--ceeeeccccc--cccccCC------
Q 013456 150 KLQLLRYVGLRRTFIDSIP--KSLGDLHSLETLDMKHTNITSLPKSIWKVKTL--RHLYLNDIHL--QMSVQKP------ 217 (442)
Q Consensus 150 ~l~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~~~~------ 217 (442)
.+++|++|++++|.+..+| ..++++++|++|++++|.++. ..+..+++| ++|++++|.+ .+..+..
T Consensus 119 ~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~ 196 (562)
T 3a79_B 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196 (562)
T ss_dssp CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCc
Confidence 8999999999999998764 789999999999999999875 245556666 9999999877 3322211
Q ss_pred ------------------CCCCCCcccccccccccCCC----------------------------C----Cchhhhccc
Q 013456 218 ------------------FVKPSLTNLRTLWGLSIGKK----------------------------S----PPLNWLENL 247 (442)
Q Consensus 218 ------------------~~~~~l~~L~~L~~~~~~~~----------------------------~----~~~~~l~~l 247 (442)
..+..+++|+.+++..+... + ..+. ....
T Consensus 197 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-~~~~ 275 (562)
T 3a79_B 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ-FFWP 275 (562)
T ss_dssp EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH-HHTT
T ss_pred ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH-hhhc
Confidence 01123344555444433100 0 0000 0011
Q ss_pred cCcceeeEEeeccccchhHHhh-----------------------------------------------------cCCcc
Q 013456 248 SDLKNLGLICNIASLGKITNLI-----------------------------------------------------QGLTS 274 (442)
Q Consensus 248 ~~L~~L~l~~~~~~~~~~~~~l-----------------------------------------------------~~l~~ 274 (442)
++|+.|++++|.+. +.+|..+ ..+++
T Consensus 276 ~~L~~L~l~~n~l~-~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~ 354 (562)
T 3a79_B 276 RPVEYLNIYNLTIT-ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354 (562)
T ss_dssp SSEEEEEEEEEEEC-SCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred ccccEEEEeccEee-ccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCC
Confidence 25555555555332 1111111 56678
Q ss_pred cccceeeccccccCCccccccccCCcCCCceEEeccccCCC-----cccccCCCceeEEEEeccCCCCCCc-ccccCCCC
Q 013456 275 LESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGP-----LKLHELPPNLRIFTLSLSYLSEDPM-PVLGQLRE 348 (442)
Q Consensus 275 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~ 348 (442)
|+.|++++|....... ..+..+++|+.|+++++.... ..+..+ ++|+.|++++|.+++..+ ..+..+++
T Consensus 355 L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 355 FTFLNFTQNVFTDSVF----QGCSTLKRLQTLILQRNGLKNFFKVALMTKNM-SSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp CCEEECCSSCCCTTTT----TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTC-TTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred ceEEECCCCccccchh----hhhcccCCCCEEECCCCCcCCcccchhhhcCC-CCCCEEECCCCcCCCccChhhhcCccc
Confidence 8888888877655222 346788999999999874321 224455 899999999999987344 45888999
Q ss_pred CcEEEeCcccccCcccccCCCCC-CcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCcc-CCCCCCCcEEEe
Q 013456 349 LKALRLFAHSYIGEKMTCGNGGF-PQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTE-LTKLSNLKELTL 426 (442)
Q Consensus 349 L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~-l~~l~~L~~L~l 426 (442)
|+.|++++|.+.+..+. .+ ++|+.|++++| .++.++.....+++|+.|++++|....+|.. +..+++|+.|++
T Consensus 430 L~~L~l~~n~l~~~~~~----~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFR----CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp CCEEECCSSCCCGGGGS----SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEEC
T ss_pred CCEEECCCCCCCcchhh----hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEe
Confidence 99999999998765443 34 79999999997 5678887777899999999999999888776 899999999999
Q ss_pred ccccccc
Q 013456 427 VKKVLKM 433 (442)
Q Consensus 427 ~~n~l~~ 433 (442)
++|++.+
T Consensus 505 ~~N~~~c 511 (562)
T 3a79_B 505 HDNPWDC 511 (562)
T ss_dssp CSCCBCC
T ss_pred cCCCcCC
Confidence 9999864
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=6.4e-28 Score=235.96 Aligned_cols=297 Identities=19% Similarity=0.154 Sum_probs=245.2
Q ss_pred EEEecCCCCCCCChhhhhcccccceecccccccccC-CccccccCCCcEEeecCcccccc-chhhhcccccceeeecccc
Q 013456 132 RVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIH 209 (442)
Q Consensus 132 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 209 (442)
+.++.++..+..+|..+. +++++|++++|.+..+ |..+.++++|++|+|++|.++.+ |..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 578888888888988664 5899999999999988 56799999999999999999965 7789999999999999998
Q ss_pred ccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCC
Q 013456 210 LQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVP 289 (442)
Q Consensus 210 ~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 289 (442)
+.. ++.. .++++++|+.|++.++......+..+..+++|+.|+++.|.+. ...+..+..+++|+.|++++|.....+
T Consensus 92 l~~-~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 92 LKL-IPLG-VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp CCS-CCTT-SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCc-cCcc-cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcccC
Confidence 874 3322 5789999999999999887777778999999999999998765 445667889999999999999876654
Q ss_pred ccccccccCCcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccccc
Q 013456 290 SDLAIGSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTC 366 (442)
Q Consensus 290 ~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 366 (442)
.. .+..+++|+.|++.++... +..+..+ ++|+.|++++|...+..+.......+|+.|++++|.+... +..
T Consensus 169 ~~----~l~~l~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~ 242 (477)
T 2id5_A 169 TE----ALSHLHGLIVLRLRHLNINAIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV-PYL 242 (477)
T ss_dssp HH----HHTTCTTCCEEEEESCCCCEECTTCSCSC-TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC-CHH
T ss_pred hh----HhcccCCCcEEeCCCCcCcEeChhhcccC-cccceeeCCCCccccccCcccccCccccEEECcCCccccc-CHH
Confidence 43 3667899999999886422 2334445 8999999999987766666666677999999999988753 333
Q ss_pred CCCCCCcccEEEecccCCcceEE-eCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCCCCCC
Q 013456 367 GNGGFPQLRVLKLWVLKELKEWT-IEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPEDAWP 440 (442)
Q Consensus 367 ~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~~~~ 440 (442)
.+..+++|+.|++++|. +..++ .....+++|+.|++++|..... |..+..+++|++|+|++|.++.+|+..+.
T Consensus 243 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 317 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317 (477)
T ss_dssp HHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBS
T ss_pred HhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcC
Confidence 37789999999999975 44443 3457889999999999998887 88899999999999999999999986543
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1.4e-27 Score=243.86 Aligned_cols=349 Identities=19% Similarity=0.167 Sum_probs=226.2
Q ss_pred ceeEEEEecCCCCCCCCCCcccccc--ceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-hhhh
Q 013456 72 CVCRLAEHLDNLSSITPSDKKQFEY--LHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-PETI 148 (442)
Q Consensus 72 ~~~~l~~~~~~~~~~~~~~~~~~~~--lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l 148 (442)
.++.+.+..+.........+..++. |+.|.+.++.....+... +..+++|++|++++|.+..+ |..+
T Consensus 223 ~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (680)
T 1ziw_A 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS----------FAWLPQLEYFFLEYNNIQHLFSHSL 292 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT----------TTTCTTCCEEECCSCCBSEECTTTT
T ss_pred cccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc----------ccCcccccEeeCCCCccCccChhhh
Confidence 3444444444333333444444443 777777766544443322 24467777777777765543 4467
Q ss_pred hcccccceecccccccc------cCCc----cccccCCCcEEeecCcccccc-chhhhcccccceeeeccccccccccCC
Q 013456 149 GKLQLLRYVGLRRTFID------SIPK----SLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIHLQMSVQKP 217 (442)
Q Consensus 149 ~~l~~L~~L~L~~~~i~------~lp~----~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~ 217 (442)
.++++|++|+++++... .+|. .++.+++|++|++++|.+..+ |..+.++++|++|++++|.+.......
T Consensus 293 ~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~ 372 (680)
T 1ziw_A 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372 (680)
T ss_dssp TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECT
T ss_pred cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcch
Confidence 77777777777765332 3343 566777788888888777754 345677788888888777543221111
Q ss_pred CCCCCC--cccccccccccCCCCCchhhhccccCcceeeEEeeccccchh-HHhhcCCcccccceeeccccccCCccccc
Q 013456 218 FVKPSL--TNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKI-TNLIQGLTSLESLRLRSINDFYVPSDLAI 294 (442)
Q Consensus 218 ~~~~~l--~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 294 (442)
..+..+ ++|+.|++..+......+..+..+++|+.|+++.|... +.+ +..+..+++|+.|++++|.....+..
T Consensus 373 ~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--- 448 (680)
T 1ziw_A 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENIFEIYLSYNKYLQLTRN--- 448 (680)
T ss_dssp TTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE-EECCSGGGTTCTTCCEEECCSCSEEECCTT---
T ss_pred hhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc-cccCcccccCcccccEEecCCCCcceeChh---
Confidence 122222 46777777777666666677888888888888888665 333 35677788888888888776544332
Q ss_pred cccCCcCCCceEEeccccC-----CCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcc------
Q 013456 295 GSLNNHKELKELYLLGRLP-----GPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEK------ 363 (442)
Q Consensus 295 ~~~~~~~~L~~l~l~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~------ 363 (442)
.+..+++|+.|++.++.. .+..+..+ ++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 449 -~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 526 (680)
T 1ziw_A 449 -SFALVPSLQRLMLRRVALKNVDSSPSPFQPL-RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526 (680)
T ss_dssp -TTTTCTTCCEEECTTSCCBCTTCSSCTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT
T ss_pred -hhhcCcccccchhccccccccccCCcccccC-CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccC
Confidence 355677888888876531 23344444 78888888888888666667888888888888888776431
Q ss_pred -cccCCCCCCcccEEEecccCCcceEEe-CCCccccccEEEeccCCCCCCC-ccCCCCCCCcEEEeccccccccCCC
Q 013456 364 -MTCGNGGFPQLRVLKLWVLKELKEWTI-EEGAMTALEKLEIRNCPKLKMP-TELTKLSNLKELTLVKKVLKMKPED 437 (442)
Q Consensus 364 -~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~p-~~l~~l~~L~~L~l~~n~l~~~p~~ 437 (442)
+...+..+++|+.|++++| .++.++. ..+.+++|+.|++++|....+| ..+..+++|++|++++|+++.+|+.
T Consensus 527 ~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 527 GPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp SCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred CcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence 1112567788888888876 3445553 3567788888888888777774 3457788888888888888777654
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=3.6e-27 Score=228.09 Aligned_cols=278 Identities=17% Similarity=0.087 Sum_probs=227.7
Q ss_pred hhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceee
Q 013456 125 IRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLY 204 (442)
Q Consensus 125 ~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 204 (442)
+.++++|++|+++++.+..+| .++.+++|++|++++|.+..+| ++.+++|++|++++|.++.+| ++++++|++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 456899999999999998887 7899999999999999999986 899999999999999999886 88999999999
Q ss_pred eccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccc
Q 013456 205 LNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIN 284 (442)
Q Consensus 205 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 284 (442)
+++|.+.+ ++ ++.+++|+.|++..+...+. .++.+++|+.|+++.|... +.+ .+..+++|+.|++++|.
T Consensus 113 L~~N~l~~-l~----~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 113 CDTNKLTK-LD----VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKI-TKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CCSSCCSC-CC----CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCC-CCC--CCTTCTTCCEEECCSSC
T ss_pred CCCCcCCe-ec----CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcc-ccc--ccccCCcCCEEECCCCc
Confidence 99998875 32 78999999999998877663 3788999999999988433 333 46788999999999998
Q ss_pred cccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccc
Q 013456 285 DFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKM 364 (442)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 364 (442)
....+ +..+++|+.|+++++......+..+ ++|+.|++++|.+++ ++ ++.+++|+.|++++|.+.+..
T Consensus 182 l~~l~-------l~~l~~L~~L~l~~N~l~~~~l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 182 ITELD-------VSQNKLLNRLNCDTNNITKLDLNQN-IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD- 249 (457)
T ss_dssp CCCCC-------CTTCTTCCEEECCSSCCSCCCCTTC-TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred cceec-------cccCCCCCEEECcCCcCCeeccccC-CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-
Confidence 76643 4578899999999885444445565 899999999999986 33 889999999999999987643
Q ss_pred ccCCCCCCccc----------EEEecccCCcceEEeCCCccccccEEEeccCCCCCC-Cc--------cCCCCCCCcEEE
Q 013456 365 TCGNGGFPQLR----------VLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PT--------ELTKLSNLKELT 425 (442)
Q Consensus 365 ~~~~~~~~~L~----------~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~--------~l~~l~~L~~L~ 425 (442)
...+++|+ .|++++|..+..++ .+.+++|+.|++++|..++. |. .+.++++|++|+
T Consensus 250 ---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 250 ---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp ---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred ---HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence 33455554 55566665555565 46789999999999986543 22 356789999999
Q ss_pred eccccccccC
Q 013456 426 LVKKVLKMKP 435 (442)
Q Consensus 426 l~~n~l~~~p 435 (442)
+++|+++.+|
T Consensus 325 L~~N~l~~l~ 334 (457)
T 3bz5_A 325 LNNTELTELD 334 (457)
T ss_dssp CTTCCCSCCC
T ss_pred CCCCcccccc
Confidence 9999999875
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=7.6e-27 Score=232.51 Aligned_cols=330 Identities=17% Similarity=0.156 Sum_probs=241.5
Q ss_pred ccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCCh-hhhhcccccceecccccccccCCcc-cc
Q 013456 95 EYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLP-ETIGKLQLLRYVGLRRTFIDSIPKS-LG 172 (442)
Q Consensus 95 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~i~~lp~~-~~ 172 (442)
++++.|.+.++.....+... |.++++|++|++++|.+..++ ..++++++|++|++++|.+..+|.. ++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~----------~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGD----------LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp TTCCEEECCSSCCCEECSST----------TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred CCccEEECcCCccCccChhh----------hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 78999999988766554432 356899999999999888776 5799999999999999999988765 89
Q ss_pred ccCCCcEEeecCcccc--ccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCc
Q 013456 173 DLHSLETLDMKHTNIT--SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDL 250 (442)
Q Consensus 173 ~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L 250 (442)
++++|++|++++|.++ ..|..+.++++|++|++++|...+.++.. .++.+++|+.|++.++...+..+..++.+++|
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-DFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHh-hhhcccccCeeeccCCcccccChhhhhccccC
Confidence 9999999999999998 45778999999999999999865555533 68999999999999998887788889999999
Q ss_pred ceeeEEeeccccchhHHh-hcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCC-------CcccccC-
Q 013456 251 KNLGLICNIASLGKITNL-IQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPG-------PLKLHEL- 321 (442)
Q Consensus 251 ~~L~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-------~~~~~~~- 321 (442)
++|+++.|.. ..++.. +..+++|+.|++++|.....+... ......+++|+.+.+.++... ......+
T Consensus 175 ~~L~l~~n~~--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 251 (549)
T 2z81_A 175 HHLTLHLSES--AFLLEIFADILSSVRYLELRDTNLARFQFSP-LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251 (549)
T ss_dssp EEEEEECSBS--TTHHHHHHHSTTTBSEEEEESCBCTTCCCCC-CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCT
T ss_pred ceEecccCcc--cccchhhHhhcccccEEEccCCccccccccc-cchhhhhhcccceeccccccchhHHHHHHHHhhhhc
Confidence 9999998865 344444 356899999999998876532110 111223556666666543210 0001111
Q ss_pred ----------------------------CCceeEEEEeccCCCCC-----CcccccCCCCCcEEEeCcccccCcccccCC
Q 013456 322 ----------------------------PPNLRIFTLSLSYLSED-----PMPVLGQLRELKALRLFAHSYIGEKMTCGN 368 (442)
Q Consensus 322 ----------------------------~~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 368 (442)
..+++.|++.++.+... ....+...++|+.|++++|.+.. .+...+
T Consensus 252 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~ 330 (549)
T 2z81_A 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFS 330 (549)
T ss_dssp TCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHH
T ss_pred cccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHH
Confidence 13444444444433221 11112334678888888877653 333223
Q ss_pred CCCCcccEEEecccCCcceEE---eCCCccccccEEEeccCCCCCCC---ccCCCCCCCcEEEeccccccccCCCCC
Q 013456 369 GGFPQLRVLKLWVLKELKEWT---IEEGAMTALEKLEIRNCPKLKMP---TELTKLSNLKELTLVKKVLKMKPEDAW 439 (442)
Q Consensus 369 ~~~~~L~~L~l~~~~~l~~~~---~~~~~~~~L~~L~l~~c~~l~~p---~~l~~l~~L~~L~l~~n~l~~~p~~~~ 439 (442)
..+++|++|++++|.....++ ...+.+++|+.|++++|.....+ ..+..+++|++|++++|+++.+|+..+
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 407 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ 407 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCC
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhc
Confidence 468999999999987554442 23568899999999999887763 458899999999999999999998644
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=2e-26 Score=233.44 Aligned_cols=357 Identities=15% Similarity=0.090 Sum_probs=234.4
Q ss_pred CCCceeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChh-h
Q 013456 69 SDLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPE-T 147 (442)
Q Consensus 69 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~ 147 (442)
.+..++++.+..+....+....+..+++|+.|.++++....++++.| .++++|++|+|++|.+..+|. .
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f----------~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY----------QSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT----------TTCTTCCEEECTTCCCCEECGGG
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHh----------cCCCCCCEEEccCCcCCCCCHHH
Confidence 34578999998888877778889999999999999987776666544 558999999999999998876 6
Q ss_pred hhcccccceecccccccccCCc-cccccCCCcEEeecCcccc--ccchhhhcccccceeeeccccccccccCCCCCCCCc
Q 013456 148 IGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNIT--SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLT 224 (442)
Q Consensus 148 l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 224 (442)
|.++++|++|++++|.+..+|. .++++++|++|++++|.++ .+|..++.+++|++|++++|.+.+..+. .+..+.
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~l~~L~ 197 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLH 197 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG--GGHHHH
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc--cccchh
Confidence 8999999999999999999875 5899999999999999987 5678899999999999999977543221 111111
Q ss_pred ccc---------------------------cccccccCC-------------------------------CC--------
Q 013456 225 NLR---------------------------TLWGLSIGK-------------------------------KS-------- 238 (442)
Q Consensus 225 ~L~---------------------------~L~~~~~~~-------------------------------~~-------- 238 (442)
+++ .+.+..+.. ..
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence 111 110000000 00
Q ss_pred -----------------------------------------CchhhhccccCcceeeEEeeccccc--------------
Q 013456 239 -----------------------------------------PPLNWLENLSDLKNLGLICNIASLG-------------- 263 (442)
Q Consensus 239 -----------------------------------------~~~~~l~~l~~L~~L~l~~~~~~~~-------------- 263 (442)
.....+....+++.|++..+.....
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~ 357 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence 0001123334566666665532100
Q ss_pred ----hhHHhhcCCcccccceeeccccccCCc---c------------------ccccccCCcCCCceEEecccc----CC
Q 013456 264 ----KITNLIQGLTSLESLRLRSINDFYVPS---D------------------LAIGSLNNHKELKELYLLGRL----PG 314 (442)
Q Consensus 264 ----~~~~~l~~l~~L~~L~l~~~~~~~~~~---~------------------~~~~~~~~~~~L~~l~l~~~~----~~ 314 (442)
..+.....+++|+.++++.|....... . .....+..++.|+.+.+.++. ..
T Consensus 358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc
Confidence 001112245677777777665432100 0 001223455666666665431 11
Q ss_pred CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceE-EeCCC
Q 013456 315 PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEW-TIEEG 393 (442)
Q Consensus 315 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~ 393 (442)
...+..+ .+++.++++.|.+....+..+..+++|+.|++++|..........+..+++|++|++++|. ++.+ +...+
T Consensus 438 ~~~~~~l-~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~ 515 (635)
T 4g8a_A 438 FSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN 515 (635)
T ss_dssp SCTTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT
T ss_pred ccccccc-cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHHHc
Confidence 1222233 6777777777777666666777777888888877765544444456777888888888764 4443 44556
Q ss_pred ccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCCCCC
Q 013456 394 AMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPEDAW 439 (442)
Q Consensus 394 ~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~~~ 439 (442)
.+++|++|++++|.+..+ |..+..+++|+.|+|++|+|+.+++..+
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence 777888888888877776 5567777888888888888877776644
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.9e-26 Score=213.70 Aligned_cols=241 Identities=22% Similarity=0.258 Sum_probs=183.1
Q ss_pred hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456 126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL 205 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 205 (442)
...+++++|+++++.+..+|..++++++|++|++++|.+..+|..++++++|++|++++|.++.+|..+.++++|++|++
T Consensus 78 ~~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 78 ATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp HTSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND 285 (442)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 285 (442)
++|...+.+|.. ++.. . ....++.+++|+.|++++|.+. .+|..+
T Consensus 158 ~~n~~~~~~p~~--~~~~------~---------~~~~~~~l~~L~~L~L~~n~l~--~lp~~l---------------- 202 (328)
T 4fcg_A 158 RACPELTELPEP--LAST------D---------ASGEHQGLVNLQSLRLEWTGIR--SLPASI---------------- 202 (328)
T ss_dssp EEETTCCCCCSC--SEEE------C----------CCCEEESTTCCEEEEEEECCC--CCCGGG----------------
T ss_pred CCCCCccccChh--Hhhc------c---------chhhhccCCCCCEEECcCCCcC--cchHhh----------------
Confidence 998776655532 2110 0 1112344445555555544321 222222
Q ss_pred ccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccc
Q 013456 286 FYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMT 365 (442)
Q Consensus 286 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 365 (442)
..+ ++|+.|++++|.+++ ++..++.+++|+.|++++|.+.+..+.
T Consensus 203 ---------------------------------~~l-~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~ 247 (328)
T 4fcg_A 203 ---------------------------------ANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPP 247 (328)
T ss_dssp ---------------------------------GGC-TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCC
T ss_pred ---------------------------------cCC-CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHH
Confidence 223 567777777777663 455678888888888888887765544
Q ss_pred cCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCCC
Q 013456 366 CGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPED 437 (442)
Q Consensus 366 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~ 437 (442)
. +..+++|++|++++|.....++...+.+++|+.|++++|...+. |..+.++++|+.+.+..+.+..++..
T Consensus 248 ~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~~ 319 (328)
T 4fcg_A 248 I-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319 (328)
T ss_dssp C-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC----
T ss_pred H-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhhh
Confidence 3 77888899999988888888887788899999999999988876 99999999999999999888777654
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=4.3e-26 Score=212.02 Aligned_cols=284 Identities=19% Similarity=0.195 Sum_probs=203.8
Q ss_pred ceeEEEecCCCCCCCChhhhhcccccceecccccccccCCc-cccccCCCcEEeecCcccccc-chhhhcccccceeeec
Q 013456 129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLN 206 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~ 206 (442)
.++++++++++.+..+|..+. ++|++|++++|.+..++. .++++++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 467888888887777776553 578888888888877755 578888888888888888765 6778888888888888
Q ss_pred cccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeecccc-chhHHhhcCCcccccceeecccc
Q 013456 207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASL-GKITNLIQGLTSLESLRLRSIND 285 (442)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~ 285 (442)
+|.+. .+|.. + .++|+.|++.++......+..+..+++|+.|+++.|.... ...+..+..+++|+.|++++|..
T Consensus 109 ~n~l~-~l~~~--~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 109 KNQLK-ELPEK--M--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp SSCCS-BCCSS--C--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCcCC-ccChh--h--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 88765 33332 2 2678888887777766666778888888998888876541 24456677888899999988877
Q ss_pred ccCCccccccccCCcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCc
Q 013456 286 FYVPSDLAIGSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGE 362 (442)
Q Consensus 286 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 362 (442)
...+... .++|++|+++++... +..+..+ ++|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 184 ~~l~~~~-------~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 254 (330)
T 1xku_A 184 TTIPQGL-------PPSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK- 254 (330)
T ss_dssp CSCCSSC-------CTTCSEEECTTSCCCEECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-
T ss_pred ccCCccc-------cccCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-
Confidence 6655432 267888888776422 3344555 788889998888876666678888889999998888763
Q ss_pred ccccCCCCCCcccEEEecccCCcceEEeC-C------CccccccEEEeccCCCCC--C-CccCCCCCCCcEEEecccc
Q 013456 363 KMTCGNGGFPQLRVLKLWVLKELKEWTIE-E------GAMTALEKLEIRNCPKLK--M-PTELTKLSNLKELTLVKKV 430 (442)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~------~~~~~L~~L~l~~c~~l~--~-p~~l~~l~~L~~L~l~~n~ 430 (442)
.+ ..+..+++|++|++++|. ++.++.. . ...++|+.|++.+|+... . |..+..+++++.+++++|+
T Consensus 255 lp-~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 255 VP-GGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CC-TTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CC-hhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 22 236778889999988864 4443321 1 124778889998888764 3 6778888889999988874
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=5.1e-26 Score=211.66 Aligned_cols=282 Identities=18% Similarity=0.196 Sum_probs=195.2
Q ss_pred eeEEEecCCCCCCCChhhhhcccccceecccccccccCC-ccccccCCCcEEeecCcccccc-chhhhcccccceeeecc
Q 013456 130 LLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLND 207 (442)
Q Consensus 130 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~ 207 (442)
++++++++++.+..+|..+. ++|++|++++|.+..++ ..++++++|++|++++|.++.+ |..+.++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 57777777777777776553 57777777777777663 4577777777777777777754 56677777777777777
Q ss_pred ccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeecccc-chhHHhhcCCcccccceeeccccc
Q 013456 208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASL-GKITNLIQGLTSLESLRLRSINDF 286 (442)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~ 286 (442)
|.+. .+|.. +. ++|++|++.++......+..+..+++|+.|++++|.... ...+..+..+ +|+.|++++|...
T Consensus 112 n~l~-~l~~~--~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 112 NHLV-EIPPN--LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SCCC-SCCSS--CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CcCC-ccCcc--cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 7665 33322 22 677777777776665555567778888888888776541 2344555555 8888888887776
Q ss_pred cCCccccccccCCcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcc
Q 013456 287 YVPSDLAIGSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEK 363 (442)
Q Consensus 287 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 363 (442)
..+... .++|+.|+++++... +..+..+ ++|+.|++++|.+++..+..+..+++|+.|++++|.+.. .
T Consensus 186 ~l~~~~-------~~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l 256 (332)
T 2ft3_A 186 GIPKDL-------PETLNELHLDHNKIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-V 256 (332)
T ss_dssp SCCSSS-------CSSCSCCBCCSSCCCCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-C
T ss_pred ccCccc-------cCCCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-c
Confidence 655432 257788888776322 2334455 789999999999887777788899999999999998863 3
Q ss_pred cccCCCCCCcccEEEecccCCcceEEeC-C------CccccccEEEeccCCCC--CC-CccCCCCCCCcEEEecccc
Q 013456 364 MTCGNGGFPQLRVLKLWVLKELKEWTIE-E------GAMTALEKLEIRNCPKL--KM-PTELTKLSNLKELTLVKKV 430 (442)
Q Consensus 364 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~------~~~~~L~~L~l~~c~~l--~~-p~~l~~l~~L~~L~l~~n~ 430 (442)
+. .+..+++|+.|++++|. ++.++.. . ...++|+.|++.+|+.. .. |..+..+++|+.|++++|+
T Consensus 257 p~-~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 257 PA-GLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CT-TGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred Ch-hhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 33 36788999999999864 4444321 1 12578999999999877 34 7778899999999999884
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=1.5e-26 Score=213.06 Aligned_cols=245 Identities=19% Similarity=0.198 Sum_probs=157.6
Q ss_pred ceeEEEecCCCCCC---CChhhhhcccccceecccc-cccc-cCCccccccCCCcEEeecCcccc-ccchhhhcccccce
Q 013456 129 RLLRVLDLEDVYKP---VLPETIGKLQLLRYVGLRR-TFID-SIPKSLGDLHSLETLDMKHTNIT-SLPKSIWKVKTLRH 202 (442)
Q Consensus 129 ~~L~~L~l~~~~~~---~l~~~l~~l~~L~~L~L~~-~~i~-~lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~ 202 (442)
.++++|+++++.+. .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.++ .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 46888888877765 4778888888888888885 6665 67888888888888888888887 77888888888888
Q ss_pred eeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCc-ccccceee
Q 013456 203 LYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLT-SLESLRLR 281 (442)
Q Consensus 203 L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~ 281 (442)
|++++|.+.+..|. .++.++ +|++|++++|.+. +.++..+..++ +|+.|+++
T Consensus 130 L~Ls~N~l~~~~p~--~~~~l~------------------------~L~~L~L~~N~l~-~~~p~~l~~l~~~L~~L~L~ 182 (313)
T 1ogq_A 130 LDFSYNALSGTLPP--SISSLP------------------------NLVGITFDGNRIS-GAIPDSYGSFSKLFTSMTIS 182 (313)
T ss_dssp EECCSSEEESCCCG--GGGGCT------------------------TCCEEECCSSCCE-EECCGGGGCCCTTCCEEECC
T ss_pred EeCCCCccCCcCCh--HHhcCC------------------------CCCeEECcCCccc-CcCCHHHhhhhhcCcEEECc
Confidence 88888877644432 234444 4444444444332 33444455554 55666655
Q ss_pred ccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccC
Q 013456 282 SINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIG 361 (442)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 361 (442)
+|....... ..+..+ . |+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 183 ~N~l~~~~~-------------------------~~~~~l-~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 183 RNRLTGKIP-------------------------PTFANL-N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp SSEEEEECC-------------------------GGGGGC-C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred CCeeeccCC-------------------------hHHhCC-c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 554331111 112222 2 6666666666665566666677777777777776654
Q ss_pred cccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEecccc
Q 013456 362 EKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKV 430 (442)
Q Consensus 362 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~ 430 (442)
..+. +..+++|++|++++|.....++.....+++|+.|++++|..... |.. ..+++|+.+++++|+
T Consensus 236 ~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 236 DLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp BGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 3332 55667777777777654435555566677777777777766644 443 667777777777776
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=1.9e-26 Score=212.32 Aligned_cols=231 Identities=21% Similarity=0.240 Sum_probs=183.4
Q ss_pred cccceecccccccc---cCCccccccCCCcEEeecC-cccc-ccchhhhcccccceeeeccccccccccCCCCCCCCccc
Q 013456 152 QLLRYVGLRRTFID---SIPKSLGDLHSLETLDMKH-TNIT-SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNL 226 (442)
Q Consensus 152 ~~L~~L~L~~~~i~---~lp~~~~~l~~L~~L~L~~-~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 226 (442)
.++++|+++++.+. .+|..++++++|++|++++ |.+. .+|..+.++++|++|++++|.+.+..|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----------- 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP----------- 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-----------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-----------
Confidence 57888899988886 5788888899999999985 7776 788888888999999988887764433
Q ss_pred ccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceE
Q 013456 227 RTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKEL 306 (442)
Q Consensus 227 ~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l 306 (442)
..+..+++|++|++++|.+. ..++..+..+++|+.|++++|.+....
T Consensus 119 ---------------~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~----------------- 165 (313)
T 1ogq_A 119 ---------------DFLSQIKTLVTLDFSYNALS-GTLPPSISSLPNLVGITFDGNRISGAI----------------- 165 (313)
T ss_dssp ---------------GGGGGCTTCCEEECCSSEEE-SCCCGGGGGCTTCCEEECCSSCCEEEC-----------------
T ss_pred ---------------HHHhCCCCCCEEeCCCCccC-CcCChHHhcCCCCCeEECcCCcccCcC-----------------
Confidence 33556677778888877665 567788889999999999998765211
Q ss_pred EeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcc
Q 013456 307 YLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELK 386 (442)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 386 (442)
+..+..++++|+.|++++|.+++..+..++.++ |+.|++++|.+.+..+. .+..+++|+.|++++|....
T Consensus 166 --------p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 166 --------PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp --------CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG-GCCTTSCCSEEECCSSEECC
T ss_pred --------CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH-HHhcCCCCCEEECCCCceee
Confidence 122444534899999999998888888899887 99999999998765544 48899999999999975433
Q ss_pred eEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEecccccc-ccCCC
Q 013456 387 EWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLK-MKPED 437 (442)
Q Consensus 387 ~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~-~~p~~ 437 (442)
..+ ....+++|++|++++|.+... |..+..+++|++|++++|+++ .+|+.
T Consensus 236 ~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 333 356789999999999998854 999999999999999999997 56553
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.4e-24 Score=209.71 Aligned_cols=304 Identities=20% Similarity=0.197 Sum_probs=201.3
Q ss_pred CceeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhc
Q 013456 71 LCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGK 150 (442)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~ 150 (442)
..++.+.+..+.....+ ...++|+.|.+.++....++.. .++|++|++++|.+..+| .+++
T Consensus 91 ~~L~~L~l~~n~l~~lp----~~~~~L~~L~l~~n~l~~l~~~--------------~~~L~~L~L~~n~l~~lp-~~~~ 151 (454)
T 1jl5_A 91 PHLESLVASCNSLTELP----ELPQSLKSLLVDNNNLKALSDL--------------PPLLEYLGVSNNQLEKLP-ELQN 151 (454)
T ss_dssp TTCSEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCCSC--------------CTTCCEEECCSSCCSSCC-CCTT
T ss_pred CCCCEEEccCCcCCccc----cccCCCcEEECCCCccCcccCC--------------CCCCCEEECcCCCCCCCc-ccCC
Confidence 45666666555443322 2346777777776654443321 257888888888777777 5788
Q ss_pred ccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCccccccc
Q 013456 151 LQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLW 230 (442)
Q Consensus 151 l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 230 (442)
+++|++|++++|.+..+|..+ .+|++|++++|.++.+| .++++++|++|++++|.+.+ +|. ..++|+.|+
T Consensus 152 l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~ 221 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPD-----LPLSLESIV 221 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCC-----CCTTCCEEE
T ss_pred CCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCC-----CcCcccEEE
Confidence 888888888888887777643 47888888888888777 57888888888888887663 222 125778888
Q ss_pred ccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecc
Q 013456 231 GLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLG 310 (442)
Q Consensus 231 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 310 (442)
+.++... .++ .++.+++|+.|++++|.+. .++. .+++|+.|++++|.....+.. .++|+.+++++
T Consensus 222 l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~--~l~~---~~~~L~~L~l~~N~l~~l~~~--------~~~L~~L~ls~ 286 (454)
T 1jl5_A 222 AGNNILE-ELP-ELQNLPFLTTIYADNNLLK--TLPD---LPPSLEALNVRDNYLTDLPEL--------PQSLTFLDVSE 286 (454)
T ss_dssp CCSSCCS-SCC-CCTTCTTCCEEECCSSCCS--SCCS---CCTTCCEEECCSSCCSCCCCC--------CTTCCEEECCS
T ss_pred CcCCcCC-ccc-ccCCCCCCCEEECCCCcCC--cccc---cccccCEEECCCCcccccCcc--------cCcCCEEECcC
Confidence 7777655 344 3778888888888887553 2333 246788888888776654331 36788888887
Q ss_pred ccCCCcccccCCCceeEEEEeccCCCCCCcccccCC-CCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEE
Q 013456 311 RLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQL-RELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWT 389 (442)
Q Consensus 311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 389 (442)
+.. ..+...|++|+.|++++|.+++ +..+ ++|+.|++++|.+.+ .+ ..+++|+.|++++| .++.++
T Consensus 287 N~l--~~l~~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~-lp----~~~~~L~~L~L~~N-~l~~lp 353 (454)
T 1jl5_A 287 NIF--SGLSELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE-LP----ALPPRLERLIASFN-HLAEVP 353 (454)
T ss_dssp SCC--SEESCCCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSS-CCSCCC
T ss_pred Ccc--CcccCcCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccc-cc----ccCCcCCEEECCCC-cccccc
Confidence 742 2233456788999998888764 2234 589999999998875 22 23789999999987 455665
Q ss_pred eCCCccccccEEEeccCCCCCC---CccCCCC-------------CCCcEEEecccccccc
Q 013456 390 IEEGAMTALEKLEIRNCPKLKM---PTELTKL-------------SNLKELTLVKKVLKMK 434 (442)
Q Consensus 390 ~~~~~~~~L~~L~l~~c~~l~~---p~~l~~l-------------~~L~~L~l~~n~l~~~ 434 (442)
. .+++|+.|++++|..... |.++.++ ++|+.|++++|+++.+
T Consensus 354 ~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~ 411 (454)
T 1jl5_A 354 E---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411 (454)
T ss_dssp C---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------
T ss_pred c---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc
Confidence 4 578999999999998873 7788777 8899999999999753
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=2.3e-24 Score=200.44 Aligned_cols=263 Identities=18% Similarity=0.102 Sum_probs=171.1
Q ss_pred ceeEEEecCCCCCCCCh-hhhhcccccceecccccccccC-CccccccCCCcEEeecCccccccchhhhcccccceeeec
Q 013456 129 RLLRVLDLEDVYKPVLP-ETIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLN 206 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 206 (442)
++|++|++++|.+..++ ..+.++++|++|++++|.+..+ |..++++++|++|++++|.++.+|..+. ++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 45677777766666553 3566677777777777766655 5566677777777777777766666554 667777777
Q ss_pred cccccccccCCCCCCCCcccccccccccCCCC--CchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccc
Q 013456 207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKS--PPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIN 284 (442)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 284 (442)
+|.+....+. .++.+++|+.|++.++.... ..+..+..+ +|+.|++++|.+. .++..+. ++|+.|++++|.
T Consensus 132 ~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~--~l~~~~~--~~L~~L~l~~n~ 204 (332)
T 2ft3_A 132 DNRIRKVPKG--VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT--GIPKDLP--ETLNELHLDHNK 204 (332)
T ss_dssp SSCCCCCCSG--GGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS--SCCSSSC--SSCSCCBCCSSC
T ss_pred CCccCccCHh--HhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC--ccCcccc--CCCCEEECCCCc
Confidence 7766532221 35666777777766665532 334445555 6777777766543 3443332 577777777776
Q ss_pred cccCCccccccccCCcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccC
Q 013456 285 DFYVPSDLAIGSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIG 361 (442)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 361 (442)
....+. ..+..+++|+.|+++++... +..+..+ ++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+
T Consensus 205 i~~~~~----~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 205 IQAIEL----EDLLRYSKLYRLGLGHNQIRMIENGSLSFL-PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CCCCCT----TSSTTCTTCSCCBCCSSCCCCCCTTGGGGC-TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred CCccCH----HHhcCCCCCCEEECCCCcCCcCChhHhhCC-CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence 654432 23556677777777766321 2234455 79999999999988 667789999999999999998875
Q ss_pred cccccCCC------CCCcccEEEecccCCc--ceEEeCCCccccccEEEeccCC
Q 013456 362 EKMTCGNG------GFPQLRVLKLWVLKEL--KEWTIEEGAMTALEKLEIRNCP 407 (442)
Q Consensus 362 ~~~~~~~~------~~~~L~~L~l~~~~~l--~~~~~~~~~~~~L~~L~l~~c~ 407 (442)
..... +. .+++|+.|++.+|+.. ...+.....+++|+.+++++|.
T Consensus 279 ~~~~~-~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 279 VGVND-FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCTTS-SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cChhH-ccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 44332 22 2678999999998743 2334455678999999999885
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=4.2e-24 Score=198.55 Aligned_cols=271 Identities=17% Similarity=0.151 Sum_probs=216.0
Q ss_pred cccccceecccccccccCCccccccCCCcEEeecCccccccch-hhhcccccceeeeccccccccccCCCCCCCCccccc
Q 013456 150 KLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRT 228 (442)
Q Consensus 150 ~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 228 (442)
...+|++++++++.+..+|..+. ++|++|++++|.++.++. .+.++++|++|++++|.+....|. .++.+++|++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~ 104 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG--AFAPLVKLER 104 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT--TTTTCTTCCE
T ss_pred CcCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH--HhcCCCCCCE
Confidence 34589999999999999998764 689999999999998776 689999999999999998765444 5899999999
Q ss_pred ccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEe
Q 013456 229 LWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYL 308 (442)
Q Consensus 229 L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l 308 (442)
|++.++.... ++..+ .++|+.|++++|.+. ...+..+.++++|+.|++++|...... .....+..+++|+.|++
T Consensus 105 L~Ls~n~l~~-l~~~~--~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 105 LYLSKNQLKE-LPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG--IENGAFQGMKKLSYIRI 178 (330)
T ss_dssp EECCSSCCSB-CCSSC--CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGG--BCTTGGGGCTTCCEEEC
T ss_pred EECCCCcCCc-cChhh--cccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccC--cChhhccCCCCcCEEEC
Confidence 9998887653 33333 279999999999765 555667889999999999998765311 11234677899999999
Q ss_pred ccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceE
Q 013456 309 LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEW 388 (442)
Q Consensus 309 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 388 (442)
+++..... ...++++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++| .+..+
T Consensus 179 ~~n~l~~l-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~l 255 (330)
T 1xku_A 179 ADTNITTI-PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNN-KLVKV 255 (330)
T ss_dssp CSSCCCSC-CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSS-CCSSC
T ss_pred CCCccccC-CccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCC-cCccC
Confidence 98743211 11233799999999999987778889999999999999999875433 23678999999999997 45677
Q ss_pred EeCCCccccccEEEeccCCCCCC-CccCC------CCCCCcEEEeccccccc
Q 013456 389 TIEEGAMTALEKLEIRNCPKLKM-PTELT------KLSNLKELTLVKKVLKM 433 (442)
Q Consensus 389 ~~~~~~~~~L~~L~l~~c~~l~~-p~~l~------~l~~L~~L~l~~n~l~~ 433 (442)
+.....+++|+.|++++|.+..+ +..+. ..+.|+.|++++|++..
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 77778899999999999998887 33332 34789999999999865
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=2.9e-24 Score=217.59 Aligned_cols=140 Identities=24% Similarity=0.153 Sum_probs=114.8
Q ss_pred ccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChh-hhhcccccceecccccccccCCc-ccc
Q 013456 95 EYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIPK-SLG 172 (442)
Q Consensus 95 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp~-~~~ 172 (442)
+.++.|.++++....++...| .++++|++|+|++|.+..+++ +|.++++|++|+|++|.+..+|. .|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f----------~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSF----------FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTT----------TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred cCCCEEEeeCCCCCCCCHHHH----------hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 478999999888777766544 558999999999999988865 68999999999999999999875 579
Q ss_pred ccCCCcEEeecCccccccch-hhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhc
Q 013456 173 DLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLE 245 (442)
Q Consensus 173 ~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~ 245 (442)
++++|++|++++|+++.+|. .++++++|++|++++|.+.. ++.+..++.+++|++|++.++......+..+.
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC-CCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc-CCCchhhccchhhhhhcccCcccccccccccc
Confidence 99999999999999998876 48899999999999998764 33344678899999999888776544444443
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.1e-23 Score=203.44 Aligned_cols=301 Identities=20% Similarity=0.175 Sum_probs=228.7
Q ss_pred eeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhccc
Q 013456 73 VCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQ 152 (442)
Q Consensus 73 ~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~ 152 (442)
++++.+........+ ...++++.|.+.++....+|.. +++|++|++++|.+..++... +
T Consensus 73 l~~L~l~~~~l~~lp----~~~~~L~~L~l~~n~l~~lp~~--------------~~~L~~L~l~~n~l~~l~~~~---~ 131 (454)
T 1jl5_A 73 AHELELNNLGLSSLP----ELPPHLESLVASCNSLTELPEL--------------PQSLKSLLVDNNNLKALSDLP---P 131 (454)
T ss_dssp CSEEECTTSCCSCCC----SCCTTCSEEECCSSCCSSCCCC--------------CTTCCEEECCSSCCSCCCSCC---T
T ss_pred CCEEEecCCccccCC----CCcCCCCEEEccCCcCCccccc--------------cCCCcEEECCCCccCcccCCC---C
Confidence 355555544433222 2347899999988876665532 478999999999887776432 6
Q ss_pred ccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCccccccccc
Q 013456 153 LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGL 232 (442)
Q Consensus 153 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~ 232 (442)
+|++|++++|.+..+| +++++++|++|++++|.++.+|..+ .+|++|++++|.+.+ +| .++.+++|+.|++.
T Consensus 132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~---~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LP---ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CC---CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-Cc---cccCCCCCCEEECC
Confidence 8999999999999998 5999999999999999999888654 589999999998875 44 48899999999998
Q ss_pred ccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecccc
Q 013456 233 SIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRL 312 (442)
Q Consensus 233 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 312 (442)
++...+ ++. ..++|+.|++++|... .++ .+..+++|+.|++++|.....+. ..++|+.|+++++.
T Consensus 204 ~N~l~~-l~~---~~~~L~~L~l~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~l~~--------~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 204 NNSLKK-LPD---LPLSLESIVAGNNILE--ELP-ELQNLPFLTTIYADNNLLKTLPD--------LPPSLEALNVRDNY 268 (454)
T ss_dssp SSCCSS-CCC---CCTTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSSCCS--------CCTTCCEEECCSSC
T ss_pred CCcCCc-CCC---CcCcccEEECcCCcCC--ccc-ccCCCCCCCEEECCCCcCCcccc--------cccccCEEECCCCc
Confidence 887654 222 2358999999998654 555 37889999999999988765443 24789999998875
Q ss_pred CCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCC-CcccEEEecccCCcceEEeC
Q 013456 313 PGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGF-PQLRVLKLWVLKELKEWTIE 391 (442)
Q Consensus 313 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~ 391 (442)
.. .+...+++|+.|++++|.+++. +. -.++|+.|++++|.+.+. ..+ ++|+.|++++|. +..++.
T Consensus 269 l~--~l~~~~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i------~~~~~~L~~L~Ls~N~-l~~lp~- 334 (454)
T 1jl5_A 269 LT--DLPELPQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL------CDLPPSLEELNVSNNK-LIELPA- 334 (454)
T ss_dssp CS--CCCCCCTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE------CCCCTTCCEEECCSSC-CSCCCC-
T ss_pred cc--ccCcccCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcc------cCCcCcCCEEECCCCc-cccccc-
Confidence 22 2333458999999999988752 11 126899999999988641 123 599999999964 444443
Q ss_pred CCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCC
Q 013456 392 EGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPE 436 (442)
Q Consensus 392 ~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~ 436 (442)
.+++|+.|++++|....+|. .+++|++|++++|+++.+|.
T Consensus 335 --~~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ 374 (454)
T 1jl5_A 335 --LPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPD 374 (454)
T ss_dssp --CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCC
T ss_pred --cCCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCC
Confidence 37999999999998887776 57899999999999988553
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=2.8e-24 Score=201.63 Aligned_cols=256 Identities=16% Similarity=0.133 Sum_probs=132.9
Q ss_pred ceeEEEecCCCCCCCChh-hhhcccccceecccccccccC-CccccccCCCcEEeecCccccccchh-hhcccccceeee
Q 013456 129 RLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYL 205 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 205 (442)
++|++|+++++.+..++. .+.++++|++|++++|.+..+ |..++++++|++|++++|.++.+|.. +.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 356666666655555544 455566666666666655554 33455566666666666666555544 455666666666
Q ss_pred ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND 285 (442)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 285 (442)
++|.+.. ++.. ..+..+++|+.|++++|.......+..+..+++|+.|++++|..
T Consensus 132 ~~n~l~~-l~~~------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 132 LGNPYKT-LGET------------------------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp TTCCCSS-SCSS------------------------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCCcc-cCch------------------------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 6555442 2211 12344445555555554211122233445555555555555543
Q ss_pred ccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccc
Q 013456 286 FYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMT 365 (442)
Q Consensus 286 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 365 (442)
..... ..+..+ ++|+.|++++|.++......+..+++|+.|++++|.+.+..+.
T Consensus 187 ~~~~~-------------------------~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 240 (353)
T 2z80_A 187 QSYEP-------------------------KSLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240 (353)
T ss_dssp CEECT-------------------------TTTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred CccCH-------------------------HHHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence 32211 112222 4555555555554322222233455555555555555432211
Q ss_pred c--CCCCCCcccEEEecccCCcc----eEEeCCCccccccEEEeccCCCCCCCccC-CCCCCCcEEEeccccccccC
Q 013456 366 C--GNGGFPQLRVLKLWVLKELK----EWTIEEGAMTALEKLEIRNCPKLKMPTEL-TKLSNLKELTLVKKVLKMKP 435 (442)
Q Consensus 366 ~--~~~~~~~L~~L~l~~~~~l~----~~~~~~~~~~~L~~L~l~~c~~l~~p~~l-~~l~~L~~L~l~~n~l~~~p 435 (442)
. .....+.++.+.+.++.... .++.....+++|+.|++++|....+|..+ ..+++|++|++++|++..-+
T Consensus 241 ~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 241 ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 1 12234456666666543211 23333456788888888888777776664 77888888888888876544
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=6.6e-24 Score=195.09 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=44.7
Q ss_pred EEecCCCCCCCChhhhhcccccceecccccccccCCcc-ccccCCCcEEeecCcccccc---chhhhcccccceeeeccc
Q 013456 133 VLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS-LGDLHSLETLDMKHTNITSL---PKSIWKVKTLRHLYLNDI 208 (442)
Q Consensus 133 ~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~l~~~ 208 (442)
.++++++.+..+|..+. ++|++|++++|.+..+|.. ++++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 45555555556655432 4566666666666666543 45666666666666665533 455555666666666666
Q ss_pred ccc
Q 013456 209 HLQ 211 (442)
Q Consensus 209 ~~~ 211 (442)
.+.
T Consensus 89 ~i~ 91 (306)
T 2z66_A 89 GVI 91 (306)
T ss_dssp SEE
T ss_pred ccc
Confidence 544
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=6.5e-23 Score=204.17 Aligned_cols=260 Identities=18% Similarity=0.119 Sum_probs=207.5
Q ss_pred ceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccc
Q 013456 129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDI 208 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 208 (442)
.++++|+++++.+..+|..+. ++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 468999999999999988775 799999999999999887 57899999999999998887 7799999999999
Q ss_pred cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccC
Q 013456 209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYV 288 (442)
Q Consensus 209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 288 (442)
.+.. +|. .+++|+.|++.++.... ++. .+++|++|++++|.+. .++. .+.+|+.|++++|.+...
T Consensus 112 ~l~~-l~~-----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~--~l~~---~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 112 PLTH-LPA-----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA--SLPA---LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CCCC-CCC-----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCSCC
T ss_pred cCCC-CCC-----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCC--CcCC---ccCCCCEEECCCCCCCCC
Confidence 8764 232 56788888888776544 332 3589999999988653 3333 357899999999887765
Q ss_pred CccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCC
Q 013456 289 PSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGN 368 (442)
Q Consensus 289 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 368 (442)
+ ..+++|+.|+++++... .+...+++|+.|++++|.++. ++. .+++|+.|++++|.+.+. +
T Consensus 177 ~--------~~~~~L~~L~Ls~N~l~--~l~~~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~l-p---- 237 (622)
T 3g06_A 177 P--------MLPSGLQELSVSDNQLA--SLPTLPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSL-P---- 237 (622)
T ss_dssp C--------CCCTTCCEEECCSSCCS--CCCCCCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC-C----
T ss_pred c--------ccCCCCcEEECCCCCCC--CCCCccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcC-C----
Confidence 5 23688999999987532 233345899999999998874 332 358999999999988752 2
Q ss_pred CCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEecccccccc
Q 013456 369 GGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMK 434 (442)
Q Consensus 369 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~ 434 (442)
..+++|+.|++++| .++.++. .+++|+.|++++|.+..+|..+.++++|+.|+|++|+++..
T Consensus 238 ~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 238 VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 46799999999997 5566654 67999999999999888899999999999999999998654
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=1.7e-23 Score=192.35 Aligned_cols=227 Identities=20% Similarity=0.148 Sum_probs=151.5
Q ss_pred ceeEEEecCCCCCCCChhh-hhcccccceecccccccccC---CccccccCCCcEEeecCccccccchhhhcccccceee
Q 013456 129 RLLRVLDLEDVYKPVLPET-IGKLQLLRYVGLRRTFIDSI---PKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLY 204 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 204 (442)
++|++|+++++.+..+|.. +.++++|++|++++|.+..+ |..+..+++|++|++++|.+..+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 5688888888888888764 67888889999888887654 5667778889999998888888888888888899999
Q ss_pred eccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccc
Q 013456 205 LNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIN 284 (442)
Q Consensus 205 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 284 (442)
+++|.+....+ ...+..+++|+.|++.++......+..+..+++|+.|++++|.+.....+..+..+++|+.|++++|.
T Consensus 108 l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 108 FQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp CTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred CCCCccccccc-chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 88887764332 12466777777777776665555555566777777777776655422355556666677777776665
Q ss_pred cccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccc
Q 013456 285 DFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKM 364 (442)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 364 (442)
....+. ..+..+ ++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+
T Consensus 187 l~~~~~-------------------------~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 187 LEQLSP-------------------------TAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp CCEECT-------------------------TTTTTC-TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred cCCcCH-------------------------HHhcCC-CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 433211 112222 556666666666655444456666666666666666654433
Q ss_pred ccCCCCCC-cccEEEecccC
Q 013456 365 TCGNGGFP-QLRVLKLWVLK 383 (442)
Q Consensus 365 ~~~~~~~~-~L~~L~l~~~~ 383 (442)
.. +..++ +|+.|++++|+
T Consensus 241 ~~-~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 241 QE-LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SS-CCCCCTTCCEEECTTCC
T ss_pred HH-HHhhhccCCEEEccCCC
Confidence 32 44443 66666666654
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=2.7e-24 Score=198.01 Aligned_cols=253 Identities=17% Similarity=0.177 Sum_probs=147.6
Q ss_pred cccccceecccccccccCCccccccCCCcEEeecCcccc--ccchhhh-------cccccceeeeccccccccccCCCCC
Q 013456 150 KLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNIT--SLPKSIW-------KVKTLRHLYLNDIHLQMSVQKPFVK 220 (442)
Q Consensus 150 ~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~--~lp~~i~-------~l~~L~~L~l~~~~~~~~~~~~~~~ 220 (442)
..++|++|++++|.+ .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|.+.+..|....+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 344444444444444 444443322 444444444443 2333333 3445555555555444333332111
Q ss_pred CCCcccccccccccCCCCCchhhhccc-----cCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCcccccc
Q 013456 221 PSLTNLRTLWGLSIGKKSPPLNWLENL-----SDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIG 295 (442)
Q Consensus 221 ~~l~~L~~L~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 295 (442)
+.+++|++|++.++...+. +..++.+ ++|++|++++|.+. ...+..+..+++|+.|++++|......... .
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~ 193 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLI--S 193 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTCHHHHHH--H
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcCcchHHH--H
Confidence 4444444444444443332 3334444 67777777777554 334456666777777777766532210000 0
Q ss_pred ccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCC---CcccccCCCCCcEEEeCcccccCcccccCCCCCC
Q 013456 296 SLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSED---PMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFP 372 (442)
Q Consensus 296 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 372 (442)
.+ .+..+ ++|+.|++++|.++.. ....+..+++|+.|++++|.+.+..+...+..++
T Consensus 194 ~~-------------------~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 194 AL-------------------CPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp HS-------------------CTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred HH-------------------HhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 00 01223 6778888888877631 1233457789999999999887755444466688
Q ss_pred cccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccc
Q 013456 373 QLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKM 433 (442)
Q Consensus 373 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~ 433 (442)
+|++|++++|. ++.++.... ++|+.|++++|.+...|. +..+++|++|++++|+++.
T Consensus 254 ~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 254 QLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCEEECCCCc-cChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 99999999864 446655443 899999999998888876 8899999999999999875
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=5.1e-23 Score=190.59 Aligned_cols=221 Identities=18% Similarity=0.139 Sum_probs=149.1
Q ss_pred cccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccc
Q 013456 94 FEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGD 173 (442)
Q Consensus 94 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~ 173 (442)
..+++.|.+.++....+|.. +.++++|++|++++|.+..+|..++++++|++|++++|.+..+|..+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-----------l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~ 148 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-----------AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIAS 148 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-----------GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGG
T ss_pred ccceeEEEccCCCchhcChh-----------hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhc
Confidence 37889999998877766653 2447999999999999889999999999999999999999999999999
Q ss_pred cCCCcEEeecCcccc-ccchhhhc---------ccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhh
Q 013456 174 LHSLETLDMKHTNIT-SLPKSIWK---------VKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNW 243 (442)
Q Consensus 174 l~~L~~L~L~~~~l~-~lp~~i~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~ 243 (442)
+++|++|++++|++. .+|..+.. +++|++|++++|.+. .+ +..
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~l--------------------------p~~ 201 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SL--------------------------PAS 201 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CC--------------------------CGG
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cc--------------------------hHh
Confidence 999999999998654 78877654 777777777776554 22 233
Q ss_pred hccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCC
Q 013456 244 LENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPP 323 (442)
Q Consensus 244 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 323 (442)
++.+++|+.|++++|.+. .++..+..+++|+.|++++|........ .+..+ +
T Consensus 202 l~~l~~L~~L~L~~N~l~--~l~~~l~~l~~L~~L~Ls~n~~~~~~p~-------------------------~~~~l-~ 253 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPP-------------------------IFGGR-A 253 (328)
T ss_dssp GGGCTTCCEEEEESSCCC--CCCGGGGGCTTCCEEECTTCTTCCBCCC-------------------------CTTCC-C
T ss_pred hcCCCCCCEEEccCCCCC--cCchhhccCCCCCEEECcCCcchhhhHH-------------------------HhcCC-C
Confidence 455556666666665442 3444566666677777666554332111 12222 4
Q ss_pred ceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecc
Q 013456 324 NLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWV 381 (442)
Q Consensus 324 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 381 (442)
+|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..+.. +..+++|+.+.+..
T Consensus 254 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~-l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPP 310 (328)
T ss_dssp CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG-GGGSCTTCEEECCG
T ss_pred CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH-HhhccCceEEeCCH
Confidence 5555555555555555555555666666666665555544433 55555555555553
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=3.7e-26 Score=222.57 Aligned_cols=336 Identities=16% Similarity=0.087 Sum_probs=181.9
Q ss_pred ccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-hhhh-hccc----ccceeccccccc
Q 013456 91 KKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-PETI-GKLQ----LLRYVGLRRTFI 164 (442)
Q Consensus 91 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l-~~l~----~L~~L~L~~~~i 164 (442)
+..+++++.|.+.++.... ..+..+ . ..+..+++|++|++++|.+... +..+ ..++ +|++|++++|.+
T Consensus 24 ~~~~~~L~~L~L~~~~l~~---~~~~~l-~--~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 97 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTE---ARCKDI-S--SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97 (461)
T ss_dssp HHHHTTCSEEEEESSCCCH---HHHHHH-H--HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC
T ss_pred HhhcCCccEEEccCCCCCH---HHHHHH-H--HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCC
Confidence 4456777777777654221 111111 1 1234567777777777765442 2222 2344 577777777776
Q ss_pred c-----cCCccccccCCCcEEeecCccccc-cchhhh-----cccccceeeecccccccccc--CCCCCCCCcccccccc
Q 013456 165 D-----SIPKSLGDLHSLETLDMKHTNITS-LPKSIW-----KVKTLRHLYLNDIHLQMSVQ--KPFVKPSLTNLRTLWG 231 (442)
Q Consensus 165 ~-----~lp~~~~~l~~L~~L~L~~~~l~~-lp~~i~-----~l~~L~~L~l~~~~~~~~~~--~~~~~~~l~~L~~L~~ 231 (442)
+ .+|..+.++++|++|++++|.+.. .+..+. ..++|++|++++|.+..... .+..+..+++|++|++
T Consensus 98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 177 (461)
T 1z7x_W 98 TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177 (461)
T ss_dssp BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEEC
Confidence 5 346666777777777777777652 222222 23467777777776654221 0112445667777777
Q ss_pred cccCCCCCchhhhc-----cccCcceeeEEeeccccc---hhHHhhcCCcccccceeeccccccCCcc-ccccccCCcCC
Q 013456 232 LSIGKKSPPLNWLE-----NLSDLKNLGLICNIASLG---KITNLIQGLTSLESLRLRSINDFYVPSD-LAIGSLNNHKE 302 (442)
Q Consensus 232 ~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~ 302 (442)
.++......+..+. ..++|+.|++++|.+... .++..+..+++|+.|++++|........ ........+++
T Consensus 178 ~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~ 257 (461)
T 1z7x_W 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257 (461)
T ss_dssp CSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred cCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCC
Confidence 66654332222222 244777777776655422 2455566667777777777654321100 00011223567
Q ss_pred CceEEeccccCCC-------cccccCCCceeEEEEeccCCCCCCcccccC-----CCCCcEEEeCcccccCccc---ccC
Q 013456 303 LKELYLLGRLPGP-------LKLHELPPNLRIFTLSLSYLSEDPMPVLGQ-----LRELKALRLFAHSYIGEKM---TCG 367 (442)
Q Consensus 303 L~~l~l~~~~~~~-------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~---~~~ 367 (442)
|++|+++++.... ..+... ++|++|++++|.+++..+..+.. .++|+.|++++|.+.+... ...
T Consensus 258 L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 336 (461)
T 1z7x_W 258 LRTLWIWECGITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceEEECcCCCCCHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH
Confidence 7777776663221 111123 56777777777665432222222 2577777777776654321 112
Q ss_pred CCCCCcccEEEecccCCcceEEeCC-----CccccccEEEeccCCCCC-----CCccCCCCCCCcEEEeccccccc
Q 013456 368 NGGFPQLRVLKLWVLKELKEWTIEE-----GAMTALEKLEIRNCPKLK-----MPTELTKLSNLKELTLVKKVLKM 433 (442)
Q Consensus 368 ~~~~~~L~~L~l~~~~~l~~~~~~~-----~~~~~L~~L~l~~c~~l~-----~p~~l~~l~~L~~L~l~~n~l~~ 433 (442)
+..+++|++|++++|..-....... ...++|+.|++++|.+.. +|..+..+++|++|++++|+++.
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 3456777777777763221111100 125677777777776663 26666677777777777777643
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=5.7e-23 Score=192.74 Aligned_cols=253 Identities=16% Similarity=0.117 Sum_probs=190.0
Q ss_pred ccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCCh-hhhhcccccceecccccccccCCcc-cc
Q 013456 95 EYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLP-ETIGKLQLLRYVGLRRTFIDSIPKS-LG 172 (442)
Q Consensus 95 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~i~~lp~~-~~ 172 (442)
++++.|.+.++....++... +.++++|++|++++|.+..++ ..++++++|++|++++|.+..+|.. ++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 121 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSD----------LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121 (353)
T ss_dssp TTCCEEECTTSCCCEECTTT----------TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT
T ss_pred ccCcEEECCCCcCcccCHHH----------hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC
Confidence 58899998888766555432 356899999999999888774 5799999999999999999999876 88
Q ss_pred ccCCCcEEeecCccccccch--hhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCc
Q 013456 173 DLHSLETLDMKHTNITSLPK--SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDL 250 (442)
Q Consensus 173 ~l~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L 250 (442)
++++|++|++++|.++.+|. .+..+++|++|++++|.....++.. .++.+++|+.|++.++......+..+..+++|
T Consensus 122 ~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK-DFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH-HccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 99999999999999998887 6889999999999998533344322 58889999999998888777677888899999
Q ss_pred ceeeEEeeccccchhHHh-hcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEE
Q 013456 251 KNLGLICNIASLGKITNL-IQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFT 329 (442)
Q Consensus 251 ~~L~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~ 329 (442)
++|++++|.. ..++.. +..+++|+.|++++|.....+... +.. ......++.++
T Consensus 201 ~~L~l~~n~l--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~----------------------~~~~~~l~~l~ 255 (353)
T 2z80_A 201 SHLILHMKQH--ILLLEIFVDVTSSVECLELRDTDLDTFHFSE-LST----------------------GETNSLIKKFT 255 (353)
T ss_dssp EEEEEECSCS--TTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------------CCCCCCEEE
T ss_pred CeecCCCCcc--ccchhhhhhhcccccEEECCCCccccccccc-ccc----------------------ccccchhhccc
Confidence 9999998865 344443 445789999999988765432210 000 11124566677
Q ss_pred EeccCCCC----CCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCC
Q 013456 330 LSLSYLSE----DPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKE 384 (442)
Q Consensus 330 l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 384 (442)
++.+.+.+ .++..+..+++|+.|++++|.+.. .+...+..+++|++|++++|+.
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCc
Confidence 77766654 245567778888888888887763 3333356788888888888753
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=1.8e-22 Score=195.78 Aligned_cols=221 Identities=22% Similarity=0.166 Sum_probs=118.8
Q ss_pred ceeEEEecCCCCCCCC-hhhhhcccccceecccccccccCC-ccccccCCCcEEeecCccccccchh-hhcccccceeee
Q 013456 129 RLLRVLDLEDVYKPVL-PETIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYL 205 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 205 (442)
+++++|++++|.+..+ +..|.++++|++|+|++|.+..++ ..+.++++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4566666666655554 335566666666666666665553 4455666666666666666655443 455666666666
Q ss_pred ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND 285 (442)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 285 (442)
++|.+... +.. .+..+++|+.|++..+.....++ ...+..+++|+.|++++|.+
T Consensus 155 ~~N~l~~~-~~~-~~~~l~~L~~L~l~~~~~l~~i~------------------------~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 155 RNNPIESI-PSY-AFNRVPSLMRLDLGELKKLEYIS------------------------EGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp CSCCCCEE-CTT-TTTTCTTCCEEECCCCTTCCEEC------------------------TTTTTTCTTCCEEECTTSCC
T ss_pred CCCCccee-CHh-HHhcCCcccEEeCCCCCCccccC------------------------hhhccCCCCCCEEECCCCcc
Confidence 66655422 211 34445555555444332222111 12344455555555555444
Q ss_pred ccCCccccccccCCcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCc
Q 013456 286 FYVPSDLAIGSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGE 362 (442)
Q Consensus 286 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 362 (442)
...+ .+..+++|+.|+++++... +..+..+ ++|+.|++++|.++...+..+..+++|+.|++++|.+.+.
T Consensus 209 ~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 209 KDMP------NLTPLVGLEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp SSCC------CCTTCTTCCEEECTTSCCSEECGGGGTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cccc------cccccccccEEECcCCcCcccCcccccCc-cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence 3322 1233444444444443211 2223334 5777777777777666666677777777777777776543
Q ss_pred ccccCCCCCCcccEEEecccC
Q 013456 363 KMTCGNGGFPQLRVLKLWVLK 383 (442)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~ 383 (442)
+...+..+++|+.|++++|+
T Consensus 282 -~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 282 -PHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -CTTSSTTCTTCCEEECCSSC
T ss_pred -ChHHhccccCCCEEEccCCC
Confidence 22335667777777777764
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=195.10 Aligned_cols=221 Identities=20% Similarity=0.214 Sum_probs=124.0
Q ss_pred ceeEEEecCCCCCCCCh-hhhhcccccceecccccccccCC-ccccccCCCcEEeecCccccccch-hhhcccccceeee
Q 013456 129 RLLRVLDLEDVYKPVLP-ETIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYL 205 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l 205 (442)
+++++|+|++|.+..++ ..|.++++|++|+|++|.+..++ ..+.++++|++|+|++|.++.+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 44566666666555543 35556666666666666655553 345566666666666666665544 3555666666666
Q ss_pred ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND 285 (442)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 285 (442)
++|.+....+. .+..+++|+.|++..+...... .+..+.++++|+.|++++|.+
T Consensus 144 ~~N~i~~~~~~--~~~~l~~L~~L~l~~~~~l~~i------------------------~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 144 RNNPIESIPSY--AFNRIPSLRRLDLGELKRLSYI------------------------SEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp CSCCCCEECTT--TTTTCTTCCEEECCCCTTCCEE------------------------CTTTTTTCSSCCEEECTTSCC
T ss_pred CCCcccccCHH--HhhhCcccCEeCCCCCCCccee------------------------CcchhhcccccCeecCCCCcC
Confidence 66655422211 3444455554444433222211 122344455555555555544
Q ss_pred ccCCccccccccCCcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCc
Q 013456 286 FYVPSDLAIGSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGE 362 (442)
Q Consensus 286 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 362 (442)
...+ .+..+++|+.|+++++... +..+..+ ++|+.|++++|.++...+..+..+++|+.|+|++|.+...
T Consensus 198 ~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 198 REIP------NLTPLIKLDELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp SSCC------CCTTCSSCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred cccc------ccCCCcccCEEECCCCccCccChhhhccC-ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 3322 1334445555555444211 2233444 6788888888887766667778888888888888877643
Q ss_pred ccccCCCCCCcccEEEecccC
Q 013456 363 KMTCGNGGFPQLRVLKLWVLK 383 (442)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~ 383 (442)
. ...+..+++|+.|++++|+
T Consensus 271 ~-~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 271 P-HDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp C-TTTTSSCTTCCEEECCSSC
T ss_pred C-hhHhccccCCCEEEcCCCC
Confidence 3 3336677888888888765
No 58
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=1.8e-25 Score=217.73 Aligned_cols=328 Identities=18% Similarity=0.087 Sum_probs=231.0
Q ss_pred ccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCC-----CChhhhhcccccceecccccccccC-C
Q 013456 95 EYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKP-----VLPETIGKLQLLRYVGLRRTFIDSI-P 168 (442)
Q Consensus 95 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~l~~l~~L~~L~L~~~~i~~l-p 168 (442)
++++.|.+.++... ...+..+ +..+++|++|++++|.+. .++..+..+++|++|++++|.+... +
T Consensus 3 ~~l~~L~Ls~~~l~---~~~~~~~------~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 73 (461)
T 1z7x_W 3 LDIQSLDIQCEELS---DARWAEL------LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV 73 (461)
T ss_dssp EEEEEEEEESCCCC---HHHHHHH------HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred ccceehhhhhcccC---chhHHHH------HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH
Confidence 56777888765422 1112222 356899999999999887 4577788899999999999988653 3
Q ss_pred ccc-cccC----CCcEEeecCcccc-----ccchhhhcccccceeeeccccccccccCC---CCCCCCcccccccccccC
Q 013456 169 KSL-GDLH----SLETLDMKHTNIT-----SLPKSIWKVKTLRHLYLNDIHLQMSVQKP---FVKPSLTNLRTLWGLSIG 235 (442)
Q Consensus 169 ~~~-~~l~----~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~~~~---~~~~~l~~L~~L~~~~~~ 235 (442)
..+ ..++ +|++|++++|.++ .+|..+..+++|++|++++|.+....+.. ......++|++|++.++.
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 333 3455 7999999999888 46888899999999999999876432210 012335689999999887
Q ss_pred CCCC----chhhhccccCcceeeEEeeccccchhHHhhc-----CCcccccceeeccccccCCccccccccCCcCCCceE
Q 013456 236 KKSP----PLNWLENLSDLKNLGLICNIASLGKITNLIQ-----GLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKEL 306 (442)
Q Consensus 236 ~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l 306 (442)
.... ++..+..+++|++|++++|.+. ...+..+. ..++|+.|++++|.............+..+++|++|
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~-~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 232 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELTVSNNDIN-EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEECCSSBCH-HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEE
T ss_pred CCHHHHHHHHHHHhhCCCCCEEECcCCCcc-hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEE
Confidence 6653 3556777899999999998765 32222222 356999999999876543211112335567899999
Q ss_pred EeccccCCC-------cccccCCCceeEEEEeccCCCCC----CcccccCCCCCcEEEeCcccccCccccc----CCCCC
Q 013456 307 YLLGRLPGP-------LKLHELPPNLRIFTLSLSYLSED----PMPVLGQLRELKALRLFAHSYIGEKMTC----GNGGF 371 (442)
Q Consensus 307 ~l~~~~~~~-------~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~ 371 (442)
+++++.... ..+..-.++|++|++++|.++.. ++..+..+++|+.|++++|.+.+..... .....
T Consensus 233 ~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 312 (461)
T 1z7x_W 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG 312 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTT
T ss_pred eccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCC
Confidence 999874221 11111237999999999998753 4666778999999999999876543221 12345
Q ss_pred CcccEEEecccCCcce----EEeCCCccccccEEEeccCCCCCC-CccC----CC-CCCCcEEEecccccc
Q 013456 372 PQLRVLKLWVLKELKE----WTIEEGAMTALEKLEIRNCPKLKM-PTEL----TK-LSNLKELTLVKKVLK 432 (442)
Q Consensus 372 ~~L~~L~l~~~~~l~~----~~~~~~~~~~L~~L~l~~c~~l~~-p~~l----~~-l~~L~~L~l~~n~l~ 432 (442)
++|++|++++|..... ++.....+++|+.|++++|.+... +..+ .. .++|++|++++|.++
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 7999999999864322 233334579999999999976654 3323 22 679999999999987
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=3.9e-22 Score=193.35 Aligned_cols=247 Identities=20% Similarity=0.194 Sum_probs=163.5
Q ss_pred eeEEEecCCCCCCCChhhhhcccccceecccccccccC-CccccccCCCcEEeecCccccccc-hhhhcccccceeeecc
Q 013456 130 LLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLP-KSIWKVKTLRHLYLND 207 (442)
Q Consensus 130 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~ 207 (442)
..+.++.++..+..+|..+. ++|++|+|++|.+..+ |..++++++|++|+|++|.++.++ ..+.++++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 34677777777777776554 5788888888887766 556778888888888888877554 5677788888888887
Q ss_pred ccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccccc
Q 013456 208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY 287 (442)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 287 (442)
|.+... + +..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|+...
T Consensus 133 n~l~~~-~-------------------------~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~ 185 (452)
T 3zyi_A 133 NWLTVI-P-------------------------SGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE 185 (452)
T ss_dssp SCCSBC-C-------------------------TTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCC
T ss_pred CcCCcc-C-------------------------hhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCcc
Confidence 766532 2 112334445555555555432 2223345666777777776643322
Q ss_pred -CCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccccc
Q 013456 288 -VPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTC 366 (442)
Q Consensus 288 -~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 366 (442)
.+. ..+..+ ++|+.|++++|.+++. +.+..+++|+.|++++|.+.+..+.
T Consensus 186 ~i~~-------------------------~~~~~l-~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~- 236 (452)
T 3zyi_A 186 YISE-------------------------GAFEGL-FNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPG- 236 (452)
T ss_dssp EECT-------------------------TTTTTC-TTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGG-
T ss_pred ccCh-------------------------hhccCC-CCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCcc-
Confidence 111 112233 6777777777777643 3577788888888888887654433
Q ss_pred CCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEecccccccc
Q 013456 367 GNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMK 434 (442)
Q Consensus 367 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~ 434 (442)
.+..+++|+.|++++|......+.....+++|+.|++++|.+... +..+..+++|++|+|++|++.+-
T Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 377788888888888654333344556788888888888887777 45567788899999998887554
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=3e-23 Score=188.62 Aligned_cols=221 Identities=19% Similarity=0.122 Sum_probs=122.9
Q ss_pred EEEecCCCCCCCChhhhhcccccceecccccccccCC-ccccccCCCcEEeecCcccccc-chhhhcccccceeeecccc
Q 013456 132 RVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIH 209 (442)
Q Consensus 132 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 209 (442)
++++++++.+..+|..+ .++|++|++++|.+..+| ..++++++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 45666666666665543 346666666666666554 3456666666666666666644 4556666666666666665
Q ss_pred ccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCC
Q 013456 210 LQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVP 289 (442)
Q Consensus 210 ~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 289 (442)
....++. ..+..+++|++|++.++......+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|.+...+
T Consensus 92 ~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 92 QLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CccccCH-HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccC
Confidence 2222221 13555666666666655555444555666666666666666443 222334556666666666665544322
Q ss_pred ccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCC
Q 013456 290 SDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNG 369 (442)
Q Consensus 290 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 369 (442)
.. .+..+ ++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+. .+.
T Consensus 170 ~~-------------------------~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~ 222 (285)
T 1ozn_A 170 ER-------------------------AFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE-ALA 222 (285)
T ss_dssp TT-------------------------TTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH-HHT
T ss_pred HH-------------------------HhcCc-cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH-Hcc
Confidence 21 11222 4555666666655554455566666666666666655543222 245
Q ss_pred CCCcccEEEecccC
Q 013456 370 GFPQLRVLKLWVLK 383 (442)
Q Consensus 370 ~~~~L~~L~l~~~~ 383 (442)
.+++|+.|++++|+
T Consensus 223 ~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 223 PLRALQYLRLNDNP 236 (285)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCcccCEEeccCCC
Confidence 56666666666654
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=6.5e-22 Score=191.12 Aligned_cols=247 Identities=20% Similarity=0.165 Sum_probs=164.4
Q ss_pred eeEEEecCCCCCCCChhhhhcccccceecccccccccCC-ccccccCCCcEEeecCccccccc-hhhhcccccceeeecc
Q 013456 130 LLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLP-KSIWKVKTLRHLYLND 207 (442)
Q Consensus 130 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~ 207 (442)
..+.++.++..+..+|..+. +++++|+|++|.+..++ ..+.++++|++|+|++|.++.++ ..+.++++|++|++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 35677777777888887664 57888888888887764 56788888888888888887654 5677788888888888
Q ss_pred ccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccccc
Q 013456 208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY 287 (442)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 287 (442)
|.+... +. ..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|+...
T Consensus 122 n~l~~~-~~-------------------------~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~ 174 (440)
T 3zyj_A 122 NRLTTI-PN-------------------------GAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS 174 (440)
T ss_dssp SCCSSC-CT-------------------------TTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCC
T ss_pred CcCCee-CH-------------------------hHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcc
Confidence 766522 21 12334445555555555433 2223345667777777777644322
Q ss_pred CCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccC
Q 013456 288 VPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCG 367 (442)
Q Consensus 288 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 367 (442)
... ...+..+ ++|+.|++++|.++. ++ .+..+++|+.|++++|.+.+..+ ..
T Consensus 175 ~i~------------------------~~~~~~l-~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~-~~ 226 (440)
T 3zyj_A 175 YIS------------------------EGAFEGL-SNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRP-GS 226 (440)
T ss_dssp EEC------------------------TTTTTTC-SSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECT-TT
T ss_pred eeC------------------------cchhhcc-cccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccCh-hh
Confidence 111 0112223 667777777777663 22 46778888888888887765433 34
Q ss_pred CCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccc
Q 013456 368 NGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKM 433 (442)
Q Consensus 368 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~ 433 (442)
+..+++|+.|++++|......+.....+++|+.|++++|.+..+ +..+..+++|+.|+|++|++.+
T Consensus 227 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 77888888888888643333334456788888889888888777 5556788889999998888754
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=2.6e-23 Score=191.86 Aligned_cols=243 Identities=13% Similarity=0.010 Sum_probs=176.3
Q ss_pred hcCceeEEEecCCCCCCCCh-hhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceee
Q 013456 126 RGYRLLRVLDLEDVYKPVLP-ETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLY 204 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 204 (442)
..+++|++|++++|.+..++ ..+..+++|++|++++|.+..++. ++.+++|++|++++|.++.++. .++|++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~ 105 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEE
Confidence 45789999999999887775 578999999999999999887765 8899999999999999887763 48999999
Q ss_pred eccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhh-cCCcccccceeecc
Q 013456 205 LNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLI-QGLTSLESLRLRSI 283 (442)
Q Consensus 205 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~ 283 (442)
+++|.+....+ ..+++|+.|++.++......+..++.+++|+.|++++|.+. ...+..+ ..+++|+.|++++|
T Consensus 106 l~~n~l~~~~~-----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 106 AANNNISRVSC-----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp CCSSCCSEEEE-----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC-EEEGGGGGGGTTTCCEEECTTS
T ss_pred CCCCccCCcCc-----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC-cccHHHHhhccCcCCEEECCCC
Confidence 99998875432 24677888888888776666667777888888888887665 3233333 35678888888777
Q ss_pred ccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcc
Q 013456 284 NDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEK 363 (442)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 363 (442)
.+...+.. .. +++|+.|++++|.+++ .+..+..+++|+.|++++|.+.. .
T Consensus 180 ~l~~~~~~---------------------------~~-l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l 229 (317)
T 3o53_A 180 FIYDVKGQ---------------------------VV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-I 229 (317)
T ss_dssp CCCEEECC---------------------------CC-CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-E
T ss_pred cCcccccc---------------------------cc-cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-h
Confidence 65433211 11 2677888888887774 34457778888888888887763 2
Q ss_pred cccCCCCCCcccEEEecccCCc-ceEEeCCCccccccEEEeccCCCCC
Q 013456 364 MTCGNGGFPQLRVLKLWVLKEL-KEWTIEEGAMTALEKLEIRNCPKLK 410 (442)
Q Consensus 364 ~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~l~~c~~l~ 410 (442)
+ ..+..+++|+.|++++|+.. ..++.....+++|+.+++.+|..++
T Consensus 230 ~-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 230 E-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp C-TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred h-hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 2 23677788888888887654 2344444567778888777665443
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=1.5e-23 Score=193.40 Aligned_cols=258 Identities=14% Similarity=0.016 Sum_probs=159.4
Q ss_pred ceeEEEecCCCCCCCChh-hhhcccccceecccccccccCC-ccccccCCCcEEeecCccccccchhhhcccccceeeec
Q 013456 129 RLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLN 206 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 206 (442)
..++.++++++.+...+. .+..+++|++|++++|.+..++ ..++++++|++|++++|.++..+. +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 457788888776655544 3456789999999999998885 578999999999999999986665 8899999999999
Q ss_pred cccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456 207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF 286 (442)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 286 (442)
+|.+.+. ...++|+.|++.++......+ ..+++|+.|++++|.+. ...+..+..+++|+.|++++|.+.
T Consensus 89 ~n~l~~l-------~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 89 NNYVQEL-------LVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp SSEEEEE-------EECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCC
T ss_pred CCccccc-------cCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCC
Confidence 9987632 233667777666655433221 22445555555555443 222333444455555555554433
Q ss_pred cCCccccccccCCcCCCceEEeccccCCCcccc-cCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccc
Q 013456 287 YVPSDLAIGSLNNHKELKELYLLGRLPGPLKLH-ELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMT 365 (442)
Q Consensus 287 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 365 (442)
..+. ..+. .+ ++|+.|++++|.++.. +....+++|+.|++++|.+.+.. .
T Consensus 158 ~~~~-------------------------~~~~~~l-~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~-~ 208 (317)
T 3o53_A 158 TVNF-------------------------AELAASS-DTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMG-P 208 (317)
T ss_dssp EEEG-------------------------GGGGGGT-TTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEEC-G
T ss_pred cccH-------------------------HHHhhcc-CcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcch-h
Confidence 2111 0111 12 5666666666665532 22234666777777776665322 2
Q ss_pred cCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCC-CC-CccCCCCCCCcEEEeccc
Q 013456 366 CGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKL-KM-PTELTKLSNLKELTLVKK 429 (442)
Q Consensus 366 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l-~~-p~~l~~l~~L~~L~l~~n 429 (442)
. +..+++|+.|++++| .++.++.....+++|+.|++++|+.. .. |..+..+++|+.|++++|
T Consensus 209 ~-~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 209 E-FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp G-GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred h-hcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 1 555666777777665 34455555556666777777766665 22 555666666666666643
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=1.2e-22 Score=186.91 Aligned_cols=247 Identities=17% Similarity=0.141 Sum_probs=159.6
Q ss_pred CceeEEEecCCCCCCCChhhhhcccccceecccccccc--cCCcccc-------ccCCCcEEeecCcccc-ccchhh--h
Q 013456 128 YRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFID--SIPKSLG-------DLHSLETLDMKHTNIT-SLPKSI--W 195 (442)
Q Consensus 128 ~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~--~lp~~~~-------~l~~L~~L~L~~~~l~-~lp~~i--~ 195 (442)
.++|+.|+++++.+ .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|.++ .+|..+ .
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 46677777777766 666665554 777777777664 3455444 5777777777777776 566655 6
Q ss_pred cccccceeeeccccccccccCCCCCCCC-----cccccccccccCCCCCchhhhccccCcceeeEEeeccccch--hHHh
Q 013456 196 KVKTLRHLYLNDIHLQMSVQKPFVKPSL-----TNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGK--ITNL 268 (442)
Q Consensus 196 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l-----~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~ 268 (442)
.+++|++|++++|.+.+. |. .++.+ ++|++|++.++......+..++.+++|+.|++++|... +. .+..
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~--~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~ 194 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DA--WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL-GERGLISA 194 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SS--HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC-HHHHHHHH
T ss_pred cCCCccEEEccCCCCcch-hH--HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC-cchHHHHH
Confidence 777777777777776644 32 34444 67777777777766666677778888888888887643 22 3444
Q ss_pred h--cCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCc-ccccC
Q 013456 269 I--QGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPM-PVLGQ 345 (442)
Q Consensus 269 l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~ 345 (442)
+ ..+++|+.|++++|.+...+... . ..+..+ ++|+.|++++|.+++..+ ..+..
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~-~---------------------~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVC-S---------------------ALAAAR-VQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHH-H---------------------HHHHTT-CCCSEEECTTSCCCSSCCCSCCCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHH-H---------------------HHHhcC-CCCCEEECCCCcCCcccchhhhhh
Confidence 4 67788888888887654221100 0 001122 577777777777765442 44556
Q ss_pred CCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCC
Q 013456 346 LRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLK 410 (442)
Q Consensus 346 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~ 410 (442)
+++|+.|++++|.+. ..+.. +. ++|++|++++| .++.++. ...+++|+.|++++|+...
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~-~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKG-LP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSS-CC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccC-hhhhh-cc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 778888888888776 23322 22 77888888876 4455544 6677888888888887553
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=2.6e-20 Score=185.44 Aligned_cols=239 Identities=18% Similarity=0.102 Sum_probs=141.1
Q ss_pred ceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccc
Q 013456 129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDI 208 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 208 (442)
++|++|++++|.+..+|. .+++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|+.|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence 455666666555555554 34556666666665555554 44556666666665555554 3455666666655
Q ss_pred cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccC
Q 013456 209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYV 288 (442)
Q Consensus 209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 288 (442)
.+.. +|. .+++|+.|++..+.... ++. .+++|+.|++++|.+. .++ ..+++|+.|++++|.+...
T Consensus 132 ~l~~-lp~-----~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~--~l~---~~~~~L~~L~Ls~N~l~~l 196 (622)
T 3g06_A 132 QLTS-LPV-----LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT--SLP---MLPSGLQELSVSDNQLASL 196 (622)
T ss_dssp CCSC-CCC-----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCC
T ss_pred CCCc-CCC-----CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC--CCc---ccCCCCcEEECCCCCCCCC
Confidence 5442 221 13555555555554332 111 2345666666666443 233 3456677777777665543
Q ss_pred CccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCC
Q 013456 289 PSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGN 368 (442)
Q Consensus 289 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 368 (442)
+. ..++|+.|.+.++... .+...+++|+.|++++|.+++ ++ ..+++|+.|++++|.+.. .+.
T Consensus 197 ~~--------~~~~L~~L~L~~N~l~--~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~--- 258 (622)
T 3g06_A 197 PT--------LPSELYKLWAYNNRLT--SLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM--- 258 (622)
T ss_dssp CC--------CCTTCCEEECCSSCCS--SCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---
T ss_pred CC--------ccchhhEEECcCCccc--ccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---
Confidence 32 1356777777665321 122234678888888887774 33 456788888888887763 221
Q ss_pred CCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC
Q 013456 369 GGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM 411 (442)
Q Consensus 369 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ 411 (442)
.+++|+.|++++| .++.++.....+++|+.|++++|+....
T Consensus 259 -~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 259 -LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp -CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred -ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 5678888888886 4556666667788888888888877654
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=6.1e-22 Score=193.16 Aligned_cols=236 Identities=13% Similarity=-0.002 Sum_probs=172.8
Q ss_pred cCceeEEEecCCCCCCCCh-hhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456 127 GYRLLRVLDLEDVYKPVLP-ETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL 205 (442)
Q Consensus 127 ~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 205 (442)
.+++|++|++++|.+..++ ..++.+++|++|+|++|.+..+++ ++.+++|++|++++|.++.+|. .++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 4668999999999888775 589999999999999999887665 8999999999999999987764 389999999
Q ss_pred ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhc-CCcccccceeeccc
Q 013456 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQ-GLTSLESLRLRSIN 284 (442)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~ 284 (442)
++|.+.+..+ ..+++|+.|++.++...+..+..++.+++|+.|++++|.+. ...+..+. .+++|+.|++++|.
T Consensus 107 ~~N~l~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 107 ANNNISRVSC-----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CSSCCCCEEE-----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC-EEEGGGGGGGTTTCCEEECTTSC
T ss_pred cCCcCCCCCc-----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC-CcChHHHhhhCCcccEEecCCCc
Confidence 9998875433 24678888888888877766777888888888888888665 33455454 67888888888876
Q ss_pred cccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccc
Q 013456 285 DFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKM 364 (442)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 364 (442)
+...+.. .. +++|+.|++++|.+++ .++.+..+++|+.|++++|.+.+ .+
T Consensus 181 l~~~~~~---------------------------~~-l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp 230 (487)
T 3oja_A 181 IYDVKGQ---------------------------VV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IE 230 (487)
T ss_dssp CCEEECC---------------------------CC-CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-EC
T ss_pred ccccccc---------------------------cc-CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cc
Confidence 5433211 11 2677777777777764 34457777888888888877764 22
Q ss_pred ccCCCCCCcccEEEecccCCc-ceEEeCCCccccccEEEec
Q 013456 365 TCGNGGFPQLRVLKLWVLKEL-KEWTIEEGAMTALEKLEIR 404 (442)
Q Consensus 365 ~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~l~ 404 (442)
..+..+++|+.|++++|+.. ..++.....++.|+.+++.
T Consensus 231 -~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 231 -KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 23666777888888776544 1333344556666666664
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=6.2e-21 Score=173.30 Aligned_cols=223 Identities=17% Similarity=0.107 Sum_probs=130.4
Q ss_pred ceecccccccccCCccccccCCCcEEeecCccccccc-hhhhcccccceeeeccccccccccCCCCCCCCcccccccccc
Q 013456 155 RYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLP-KSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLS 233 (442)
Q Consensus 155 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~ 233 (442)
+.++.+++.+..+|..+ .++|++|++++|.++.++ ..+..+++|++|++++|.+....+. .+..+++|++|++.+
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA--AFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh--hcCCccCCCEEeCCC
Confidence 57788888888888655 478999999999999776 4588899999999999877644332 356666666666555
Q ss_pred cC-CCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecccc
Q 013456 234 IG-KKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRL 312 (442)
Q Consensus 234 ~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 312 (442)
+. .....+..+. .+++|+.|++++|.....+..
T Consensus 90 n~~l~~~~~~~~~-------------------------~l~~L~~L~l~~n~l~~~~~~--------------------- 123 (285)
T 1ozn_A 90 NAQLRSVDPATFH-------------------------GLGRLHTLHLDRCGLQELGPG--------------------- 123 (285)
T ss_dssp CTTCCCCCTTTTT-------------------------TCTTCCEEECTTSCCCCCCTT---------------------
T ss_pred CCCccccCHHHhc-------------------------CCcCCCEEECCCCcCCEECHh---------------------
Confidence 54 2222233344 444455555544433221111
Q ss_pred CCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCC
Q 013456 313 PGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEE 392 (442)
Q Consensus 313 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 392 (442)
.+..+ ++|+.|++++|.++...+..++.+++|+.|++++|.+.+. +...+..+++|++|++++|......+...
T Consensus 124 ----~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 197 (285)
T 1ozn_A 124 ----LFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRVAHVHPHAF 197 (285)
T ss_dssp ----TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred ----HhhCC-cCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCccccCEEECCCCcccccCHhHc
Confidence 11122 4555555555555544444455566666666666655432 22224556666666666654322223444
Q ss_pred CccccccEEEeccCCCCCCC-ccCCCCCCCcEEEeccccccc
Q 013456 393 GAMTALEKLEIRNCPKLKMP-TELTKLSNLKELTLVKKVLKM 433 (442)
Q Consensus 393 ~~~~~L~~L~l~~c~~l~~p-~~l~~l~~L~~L~l~~n~l~~ 433 (442)
..+++|+.|++++|.....| ..+..+++|++|++++|++..
T Consensus 198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 55666666666666665553 345666666666666666643
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=2.9e-22 Score=201.25 Aligned_cols=352 Identities=14% Similarity=0.063 Sum_probs=193.9
Q ss_pred CceeEEEEecCCCCCCCCCCccc-ccc-ceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCC-----
Q 013456 71 LCVCRLAEHLDNLSSITPSDKKQ-FEY-LHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPV----- 143 (442)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~-~~~-lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----- 143 (442)
..++.+.+............... +++ |+.|.+.++.. .....+..+ ...+++|++|++++|.+..
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~--~~~~~l~~~------~~~~~~L~~L~L~~~~~~~~~~~~ 183 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG--FTTDGLLSI------VTHCRKIKTLLMEESSFSEKDGKW 183 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE--EEHHHHHHH------HHHCTTCSEEECTTCEEECCCSHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC--cCHHHHHHH------HhhCCCCCEEECccccccCcchhH
Confidence 34666666554322111111222 344 99999886541 111111111 2468999999999886533
Q ss_pred Chhhhhcccccceecccccccc-----cCCccccccCCCcEEeecCccccccchhhhcccccceeeecccccccc-ccCC
Q 013456 144 LPETIGKLQLLRYVGLRRTFID-----SIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMS-VQKP 217 (442)
Q Consensus 144 l~~~l~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~ 217 (442)
++..+..+++|++|++++|.+. .++..+.++++|++|++++|.+..+|..+..+++|++|+++.+..... .+..
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHH
Confidence 3445667899999999998875 334455788999999999999888888899999999999975322100 1111
Q ss_pred CCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecc--------------
Q 013456 218 FVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSI-------------- 283 (442)
Q Consensus 218 ~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-------------- 283 (442)
..+..+++|+.+.+..+ .....+..+..+++|++|++++|......+...+..+++|+.|+++++
T Consensus 264 ~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK 342 (592)
T ss_dssp SCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT
T ss_pred HHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCC
Confidence 23445555555554432 123344444555555555555554332233333444555555555421
Q ss_pred --------------------ccccCCccccccccCCcCCCceEEeccccCC---CcccccCCCceeEEEEe----ccCCC
Q 013456 284 --------------------NDFYVPSDLAIGSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLS----LSYLS 336 (442)
Q Consensus 284 --------------------~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~----~~~~~ 336 (442)
...+... .......+++|++|.+..+... ...+...+++|+.|+++ .+.++
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRG--LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHH--HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred CCCEEEeecCccccccccccCccCHHH--HHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 1111000 0000122455555555332211 11122213566666665 23344
Q ss_pred CC-----CcccccCCCCCcEEEeCccc--ccCcccccCCCCCCcccEEEecccCCcc-eEEeCCCccccccEEEeccCCC
Q 013456 337 ED-----PMPVLGQLRELKALRLFAHS--YIGEKMTCGNGGFPQLRVLKLWVLKELK-EWTIEEGAMTALEKLEIRNCPK 408 (442)
Q Consensus 337 ~~-----~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c~~ 408 (442)
+. ++..+..+++|+.|+++.|. +.+..+......+++|++|++++|.... .++.....+++|++|++++|..
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 32 12224556677777775433 3333222222347778888887765322 1233335678999999999985
Q ss_pred CCC--CccCCCCCCCcEEEeccccccc
Q 013456 409 LKM--PTELTKLSNLKELTLVKKVLKM 433 (442)
Q Consensus 409 l~~--p~~l~~l~~L~~L~l~~n~l~~ 433 (442)
... +..+..+++|++|+|++|+++.
T Consensus 501 ~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 501 SERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp BHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred cHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 432 4445678999999999998754
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=1e-20 Score=184.47 Aligned_cols=225 Identities=18% Similarity=0.126 Sum_probs=128.6
Q ss_pred CCChhhhhcc----cccceecccccccccCC-ccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccC
Q 013456 142 PVLPETIGKL----QLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQK 216 (442)
Q Consensus 142 ~~l~~~l~~l----~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 216 (442)
..+|..+..+ ++|++|+|++|.+..++ ..++.+++|++|+|++|.++..++ +..+++|++|++++|.+.+. +
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l-~- 96 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-L- 96 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE-E-
T ss_pred hhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC-C-
Confidence 3445555444 48999999999998874 678999999999999999986655 88999999999999987632 2
Q ss_pred CCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccc
Q 013456 217 PFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGS 296 (442)
Q Consensus 217 ~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 296 (442)
..++|+.|++.++......+ ..+++|+.|++++|.+. ...+..+..+
T Consensus 97 -----~~~~L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~-~~~~~~~~~l------------------------ 143 (487)
T 3oja_A 97 -----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKIT-MLRDLDEGCR------------------------ 143 (487)
T ss_dssp -----ECTTCCEEECCSSCCCCEEE---CCCSSCEEEECCSSCCC-SGGGBCGGGG------------------------
T ss_pred -----CCCCcCEEECcCCcCCCCCc---cccCCCCEEECCCCCCC-CCCchhhcCC------------------------
Confidence 22556666655554433221 12234444444443322 2222223333
Q ss_pred cCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCccccc-CCCCCcEEEeCcccccCcccccCCCCCCccc
Q 013456 297 LNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLG-QLRELKALRLFAHSYIGEKMTCGNGGFPQLR 375 (442)
Q Consensus 297 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 375 (442)
++|+.|++++|.+++..+..+. .+++|+.|++++|.+.+.. ....+++|+
T Consensus 144 --------------------------~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~---~~~~l~~L~ 194 (487)
T 3oja_A 144 --------------------------SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK---GQVVFAKLK 194 (487)
T ss_dssp --------------------------SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE---CCCCCTTCC
T ss_pred --------------------------CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc---ccccCCCCC
Confidence 4455555555555443343433 4555555555555554321 122355555
Q ss_pred EEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEecccccc
Q 013456 376 VLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLK 432 (442)
Q Consensus 376 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~ 432 (442)
.|++++| .+..++.....+++|+.|++++|.+..+|..+..+++|+.|++++|++.
T Consensus 195 ~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 195 TLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEECCSS-CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred EEECCCC-CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 5555554 2334443344555555555555555544555555555555555555554
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1.3e-21 Score=196.51 Aligned_cols=324 Identities=15% Similarity=0.033 Sum_probs=198.0
Q ss_pred ccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCC-----CChhhhhcccccceecccccccccC
Q 013456 93 QFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKP-----VLPETIGKLQLLRYVGLRRTFIDSI 167 (442)
Q Consensus 93 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~l~~l~~L~~L~L~~~~i~~l 167 (442)
.+++|+.|.+.++.........+..+. ..+++|++|+++++.+. .++..+.++++|++|++++|.+..+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~------~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l 235 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELA------QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL 235 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHH------HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG
T ss_pred hCCCCCEEECccccccCcchhHHHHHH------hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH
Confidence 456666666665532221111111111 23555555555555443 1223344455555555555554444
Q ss_pred Cccc---------------------------cccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCC
Q 013456 168 PKSL---------------------------GDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVK 220 (442)
Q Consensus 168 p~~~---------------------------~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 220 (442)
|..+ ..+++|+.|+++++....+|..+..+++|++|++++|.+...... ..+
T Consensus 236 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~-~~~ 314 (592)
T 3ogk_B 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHC-TLI 314 (592)
T ss_dssp HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHH-HHH
T ss_pred HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHH-HHH
Confidence 4444 444555555555544446777778899999999999885433221 135
Q ss_pred CCCcccccccccccCCCCCchhhhccccCcceeeEEe-----------eccccchhHHhhcCCcccccceeeccccccCC
Q 013456 221 PSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLIC-----------NIASLGKITNLIQGLTSLESLRLRSINDFYVP 289 (442)
Q Consensus 221 ~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~-----------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 289 (442)
..+++|+.|++..+-...........+++|++|+++. +..+...+......+++|+.|++..+.....
T Consensus 315 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~- 393 (592)
T 3ogk_B 315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE- 393 (592)
T ss_dssp TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH-
T ss_pred HhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH-
Confidence 7889999998873322233344456789999999993 4444344555566789999999976554321
Q ss_pred ccccccccC-CcCCCceEEecccc-----CCC-------cccccCCCceeEEEEeccC--CCCCCccccc-CCCCCcEEE
Q 013456 290 SDLAIGSLN-NHKELKELYLLGRL-----PGP-------LKLHELPPNLRIFTLSLSY--LSEDPMPVLG-QLRELKALR 353 (442)
Q Consensus 290 ~~~~~~~~~-~~~~L~~l~l~~~~-----~~~-------~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~-~l~~L~~L~ 353 (442)
.+..+. .+++|+.|++.+.. ... ..+.. +++|+.|+++.|. +++..+..++ .+++|+.|+
T Consensus 394 ---~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~-~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 394 ---SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG-CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469 (592)
T ss_dssp ---HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH-CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred ---HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh-CCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence 112233 37899999997431 110 00222 4899999998754 5544444444 489999999
Q ss_pred eCcccccCcccccCCCCCCcccEEEecccCCcce--EEeCCCccccccEEEeccCCCCCC-Cc-cCCCCCCCcEEEeccc
Q 013456 354 LFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKE--WTIEEGAMTALEKLEIRNCPKLKM-PT-ELTKLSNLKELTLVKK 429 (442)
Q Consensus 354 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~c~~l~~-p~-~l~~l~~L~~L~l~~n 429 (442)
+++|.+.+........++++|+.|++++|. +.. ++.....+++|+.|++++|..... .. -...++.+....+..+
T Consensus 470 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 470 LGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp ECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred ccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 999998765555446788999999999997 332 233335689999999999996554 22 2245677766655543
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=1.1e-19 Score=164.15 Aligned_cols=202 Identities=20% Similarity=0.161 Sum_probs=120.0
Q ss_pred ceeEEEecCCCCCCCChh-hhhcccccceecccccccccCCc-cccccCCCcEEeecCccccccc-hhhhcccccceeee
Q 013456 129 RLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLP-KSIWKVKTLRHLYL 205 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l 205 (442)
++|++|+++++.+..++. .+.++++|++|++++|.+..++. .++++++|++|++++|.++.++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 347777777776666654 56677777777777777766643 5667777777777777776544 45667777777777
Q ss_pred ccccccccccCCCCCCCCcccccccccccCCCCC-chhhhccccCcceeeEEeeccccchhHHhhcCCcccc----ccee
Q 013456 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSP-PLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLE----SLRL 280 (442)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~----~L~l 280 (442)
++|.+....+. .++.+++|++|++.++..... .+..++.+++|+.|++++|.+. ...+..+..+.+|+ .|++
T Consensus 108 ~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 108 VETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp TTSCCCCSTTC--CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCTTCCEEEEC
T ss_pred CCCCccccCch--hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC-cCCHHHhhhhhhccccceeeec
Confidence 77766543332 256666666666666555432 3555566666666666655443 22222333333333 3444
Q ss_pred eccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCccccc
Q 013456 281 RSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYI 360 (442)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 360 (442)
++|.....+. ..... .+|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 185 s~n~l~~~~~--------------------------~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 185 SLNPMNFIQP--------------------------GAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CSSCCCEECT--------------------------TSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCCcccccCc--------------------------cccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 4443322111 11112 36777777777777655555677777888887777664
No 72
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=1.3e-20 Score=175.55 Aligned_cols=255 Identities=22% Similarity=0.209 Sum_probs=165.4
Q ss_pred eeEEEecCCCCCCCChhhhhcc--cccceecccccccccCCccccccCCCcEEeecCcccc-c-cchhhhcccccceeee
Q 013456 130 LLRVLDLEDVYKPVLPETIGKL--QLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNIT-S-LPKSIWKVKTLRHLYL 205 (442)
Q Consensus 130 ~L~~L~l~~~~~~~l~~~l~~l--~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~-~-lp~~i~~l~~L~~L~l 205 (442)
.++.++++++.+. +..+..+ +++++|++++|.+...+..+.++++|++|++++|.+. . +|..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4788888877665 5667777 8899999999888877666778899999999999877 3 7778888999999999
Q ss_pred ccccccccccCCCCCCCCcccccccccccCCCC--CchhhhccccCcceeeEEee-ccccchhHHhhcCCc-ccccceee
Q 013456 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKS--PPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLT-SLESLRLR 281 (442)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~l~~l~-~L~~L~l~ 281 (442)
++|.+.+..+. .++.+++|++|++.++.... ..+..+..+++|++|++++| ......++..+..++ +|+.|+++
T Consensus 126 ~~~~l~~~~~~--~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 126 EGLRLSDPIVN--TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp TTCBCCHHHHH--HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred cCcccCHHHHH--HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 98876654443 36667777777777763322 24555677778888888777 655334566666777 77777777
Q ss_pred cccc-ccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccC-CCCCCcccccCCCCCcEEEeCcccc
Q 013456 282 SIND-FYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSY-LSEDPMPVLGQLRELKALRLFAHSY 359 (442)
Q Consensus 282 ~~~~-~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~ 359 (442)
+|.. ... ... +..+..+ ++|+.|++++|. +++..+..++.+++|+.|++++|..
T Consensus 204 ~~~~~~~~-~~l----------------------~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 204 GYRKNLQK-SDL----------------------STLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp SCGGGSCH-HHH----------------------HHHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred CCcccCCH-HHH----------------------HHHHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 7631 100 000 0011222 677777777776 5555666777788888888887742
Q ss_pred cCcccccCCCCCCcccEEEecccCCcceEEeCCCcc-ccccEEEeccCCCCCC-CccCC
Q 013456 360 IGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAM-TALEKLEIRNCPKLKM-PTELT 416 (442)
Q Consensus 360 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l~~-p~~l~ 416 (442)
........+..+++|+.|++++| +... ....+ .+|+.|++++|...+. |..+.
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~--i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI--VPDG--TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS--SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc--cCHH--HHHHHHhhCcceEEecccCccccCCccc
Confidence 21111112556777788877776 2110 01112 2355566776666655 44443
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.3e-19 Score=161.51 Aligned_cols=125 Identities=25% Similarity=0.280 Sum_probs=78.6
Q ss_pred eeEEEecCCCCCCCChhhhhcccccceecccccccccCCc-cccccCCCcEEeecCccccccchhh-hcccccceeeecc
Q 013456 130 LLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLPKSI-WKVKTLRHLYLND 207 (442)
Q Consensus 130 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~l~~ 207 (442)
..+.++++++.+..+|..+. ++|++|++++|.+..+|. .++++++|++|++++|.++.+|..+ ..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 46678888777777776554 577888888887777754 5777888888888888887776654 5678888888887
Q ss_pred ccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEee
Q 013456 208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICN 258 (442)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 258 (442)
|.+... +.. .+..+++|+.|++.++......+..++.+++|+.|++++|
T Consensus 95 n~l~~~-~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 95 NKLQAL-PIG-VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp SCCCCC-CTT-TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCcC-CHh-HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 766532 211 3455555555555544443333333444444444444444
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=2.9e-20 Score=167.54 Aligned_cols=107 Identities=21% Similarity=0.232 Sum_probs=51.1
Q ss_pred hhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccc
Q 013456 148 IGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLR 227 (442)
Q Consensus 148 l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~ 227 (442)
...+++|+.|+++++.+..++ .++.+++|++|++++|.++.++ .+..+++|++|++++|.+.+..+. .++.+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNG--VFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTT--TTTTCTTCC
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChh--HhcCCcCCC
Confidence 344555555555555555443 3555555666666655555443 455555556665555554422111 234444444
Q ss_pred cccccccCCCCCchhhhccccCcceeeEEee
Q 013456 228 TLWGLSIGKKSPPLNWLENLSDLKNLGLICN 258 (442)
Q Consensus 228 ~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 258 (442)
+|++.++......+..++.+++|+.|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCC
Confidence 4444443333222223344444444444444
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=2.2e-19 Score=164.66 Aligned_cols=146 Identities=16% Similarity=0.197 Sum_probs=89.0
Q ss_pred cCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeec
Q 013456 127 GYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLN 206 (442)
Q Consensus 127 ~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 206 (442)
.+++|+.|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 4667777777777776665 56677777777777777777765 777777777777777777664 46677777777777
Q ss_pred cccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccc
Q 013456 207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIN 284 (442)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 284 (442)
+|.+... + .+..+++|+.|++.++......+ +..+++|+.|++++|.+. .++. +..+++|+.|++++|.
T Consensus 116 ~n~l~~~-~---~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~--~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 116 STQITDV-T---PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS--DLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp TSCCCCC-G---GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSC
T ss_pred CCCCCCc-h---hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC--CChh-hcCCCCCCEEECCCCc
Confidence 7766532 2 15555666666555554433221 445555555555555332 1222 4444455555554443
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=6.5e-20 Score=165.23 Aligned_cols=177 Identities=24% Similarity=0.254 Sum_probs=125.9
Q ss_pred hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchh-hhcccccceee
Q 013456 126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLY 204 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~ 204 (442)
..+++|+.|+++++.+..++ .+..+++|++|++++|.+..++ .++.+++|++|++++|.++.++.. +..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 45678888888888777664 4777888888888888877764 677888888888888888866554 57788888888
Q ss_pred eccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccc
Q 013456 205 LNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIN 284 (442)
Q Consensus 205 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 284 (442)
+++|.+.+..+. .++.+++|+.|++.++......+..++.+++|+.|++++|.+. ...+..+..+++|+.|++++|.
T Consensus 116 L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 116 LVENQLQSLPDG--VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp CTTSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcCCccCHH--HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCc
Confidence 888887643332 4678888888888888766655566778888888888888655 4444456778888888888877
Q ss_pred cccCCccccccccCCcCCCceEEeccc
Q 013456 285 DFYVPSDLAIGSLNNHKELKELYLLGR 311 (442)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~L~~l~l~~~ 311 (442)
....+.. .+..+++|+.+++.++
T Consensus 193 l~~~~~~----~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 193 LKSVPDG----VFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CSCCCTT----TTTTCTTCCEEECCSS
T ss_pred CCccCHH----HHhCCcCCCEEEccCC
Confidence 6554332 1333444444444443
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=3.9e-21 Score=179.03 Aligned_cols=252 Identities=16% Similarity=0.128 Sum_probs=172.0
Q ss_pred ccceecccccccccCCcccccc--CCCcEEeecCccccccchhhhcccccceeeecccccccc-ccCCCCCCCCcccccc
Q 013456 153 LLRYVGLRRTFIDSIPKSLGDL--HSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMS-VQKPFVKPSLTNLRTL 229 (442)
Q Consensus 153 ~L~~L~L~~~~i~~lp~~~~~l--~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~~~~l~~L~~L 229 (442)
.++.++++++.+. |..+..+ +++++|++++|.+...+..+..+++|++|++++|.+... .+. .+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~--~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG--ILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH--HHTTBCCCSEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH--HHhhCCCCCEE
Confidence 4777888877654 4456666 788888888888876666677788888888888876533 332 35677777777
Q ss_pred cccccCCCCCchhhhccccCcceeeEEee-ccccchhHHhhcCCcccccceeecc-ccccCCccccccccCCcCCCceEE
Q 013456 230 WGLSIGKKSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLRSI-NDFYVPSDLAIGSLNNHKELKELY 307 (442)
Q Consensus 230 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~L~~l~ 307 (442)
++.++......+..++.+++|++|++++| ......++..+..+++|+.|++++| .......
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~----------------- 186 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV----------------- 186 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH-----------------
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH-----------------
Confidence 77777655556666777777777777776 3442245666666777777777776 3321100
Q ss_pred eccccCCCcccccCCC-ceeEEEEecc--CCC-CCCcccccCCCCCcEEEeCccc-ccCcccccCCCCCCcccEEEeccc
Q 013456 308 LLGRLPGPLKLHELPP-NLRIFTLSLS--YLS-EDPMPVLGQLRELKALRLFAHS-YIGEKMTCGNGGFPQLRVLKLWVL 382 (442)
Q Consensus 308 l~~~~~~~~~~~~~~~-~L~~L~l~~~--~~~-~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~ 382 (442)
+..+..+ + +|++|++++| .++ ...+..+..+++|+.|++++|. +.+..+. .+..+++|++|++++|
T Consensus 187 -------~~~~~~l-~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 187 -------QVAVAHV-SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRC 257 (336)
T ss_dssp -------HHHHHHS-CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTC
T ss_pred -------HHHHHhc-ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCC
Confidence 1113334 5 8899999888 454 3455677889999999999998 4444444 4778899999999998
Q ss_pred CCcceE-EeCCCccccccEEEeccCCCCCCCccCCCC-CCCcEEEeccccccccCCC
Q 013456 383 KELKEW-TIEEGAMTALEKLEIRNCPKLKMPTELTKL-SNLKELTLVKKVLKMKPED 437 (442)
Q Consensus 383 ~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l-~~L~~L~l~~n~l~~~p~~ 437 (442)
..+... ....+.+++|+.|++++| .. ...+..+ .+|+.|++++|+++.+.+.
T Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~--~~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 258 YDIIPETLLELGEIPTLKTLQVFGI-VP--DGTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTS-SC--TTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CCCCHHHHHHHhcCCCCCEEeccCc-cC--HHHHHHHHhhCcceEEecccCccccCC
Confidence 643321 123467999999999999 22 2334444 3477778999999776654
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=3.9e-19 Score=161.38 Aligned_cols=200 Identities=21% Similarity=0.154 Sum_probs=119.4
Q ss_pred hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccC-CccccccCCCcEEeecCccccccchhhhcccccceee
Q 013456 126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLY 204 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 204 (442)
.++++++.++++++.+..+|..+. +++++|++++|.+..+ |..+.++++|++|++++|.++.++.. ..+++|++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 456777788888777777776553 5777888888777766 45677778888888888877766654 6777788888
Q ss_pred eccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccc
Q 013456 205 LNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIN 284 (442)
Q Consensus 205 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 284 (442)
+++|.+. .+|. .+..+++|+.|++.++......+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|.
T Consensus 84 Ls~N~l~-~l~~--~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 84 LSHNQLQ-SLPL--LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp CCSSCCS-SCCC--CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCcCC-cCch--hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCc
Confidence 8777665 2232 3555666666666555554444444555555666655555433 2222334445555555555554
Q ss_pred cccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccc
Q 013456 285 DFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSY 359 (442)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 359 (442)
+...+... +..+ ++|+.|++++|.++ .++..+..+++|+.+++.+|.+
T Consensus 160 l~~l~~~~-------------------------~~~l-~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 LTELPAGL-------------------------LNGL-ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CSCCCTTT-------------------------TTTC-TTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCccCHHH-------------------------hcCc-CCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 43322210 1122 45566666666555 3444555556666666666654
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.3e-18 Score=156.54 Aligned_cols=200 Identities=25% Similarity=0.313 Sum_probs=137.4
Q ss_pred cccceecccccccccCCccccccCCCcEEeecCccccccch-hhhcccccceeeeccccccccccCCCCCCCCccccccc
Q 013456 152 QLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLW 230 (442)
Q Consensus 152 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 230 (442)
...++++++++.++.+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|.+.. ++.. .+..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~-~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAG-IFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTT-TTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChh-hhcCCCCCCEEE
Confidence 357899999999999998764 689999999999998775 68899999999999998763 3322 457788888888
Q ss_pred ccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecc
Q 013456 231 GLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLG 310 (442)
Q Consensus 231 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 310 (442)
+..+......+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|.+...+..
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------------- 151 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKG------------------- 151 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT-------------------
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHh-------------------
Confidence 8777766555555677777777777776544 33334456666677777666654433221
Q ss_pred ccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccC
Q 013456 311 RLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLK 383 (442)
Q Consensus 311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 383 (442)
.+..+ ++|+.|++++|.++...+..+..+++|+.|++++|.+.+. +...+..+++|+.|++++|+
T Consensus 152 ------~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 152 ------VFDKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ------TTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred ------HccCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC-CHHHhccccCCCEEEecCCC
Confidence 12222 5667777777766655555566777777777777766542 22235667777777777654
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=9.3e-19 Score=158.11 Aligned_cols=222 Identities=18% Similarity=0.138 Sum_probs=140.9
Q ss_pred ecccccccccCCccccccCCCcEEeecCccccccch-hhhcccccceeeeccccccccccCCCCCCCCcccccccccccC
Q 013456 157 VGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIG 235 (442)
Q Consensus 157 L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~ 235 (442)
.+-.+..+..+|..+. ++|++|++++|.++.++. .+.++++|++|++++|.+....+. .+..+++|++|++
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L---- 83 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG--AYQSLSHLSTLIL---- 83 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT--TTTTCTTCCEEEC----
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHH--HccCCcCCCEEEC----
Confidence 4444556777887664 579999999999997765 788899999999999877643221 3445555555544
Q ss_pred CCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCC
Q 013456 236 KKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGP 315 (442)
Q Consensus 236 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 315 (442)
++|.+. ...+..+.++++|+.|++++|.....+..
T Consensus 84 --------------------~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------------ 118 (276)
T 2z62_A 84 --------------------TGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENF------------------------ 118 (276)
T ss_dssp --------------------TTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTC------------------------
T ss_pred --------------------CCCccC-ccChhhhcCCccccEEECCCCCccccCch------------------------
Confidence 444332 22234455566666666666554332221
Q ss_pred cccccCCCceeEEEEeccCCCCC-CcccccCCCCCcEEEeCcccccCcccccCCCCCCccc----EEEecccCCcceEEe
Q 013456 316 LKLHELPPNLRIFTLSLSYLSED-PMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLR----VLKLWVLKELKEWTI 390 (442)
Q Consensus 316 ~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~l~~~~~ 390 (442)
.+..+ ++|+.|++++|.++.. .+..++.+++|+.|++++|.+.+.... .+..+++|+ .|++++| .+..++.
T Consensus 119 -~~~~l-~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~l~l~L~ls~n-~l~~~~~ 194 (276)
T 2z62_A 119 -PIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLN-PMNFIQP 194 (276)
T ss_dssp -CCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-GGHHHHTCTTCCEEEECCSS-CCCEECT
T ss_pred -hcccC-CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH-HhhhhhhccccceeeecCCC-cccccCc
Confidence 12223 5677777777776652 466777778888888887777543222 233344444 7777775 3455554
Q ss_pred CCCccccccEEEeccCCCCCCCc-cCCCCCCCcEEEeccccccccC
Q 013456 391 EEGAMTALEKLEIRNCPKLKMPT-ELTKLSNLKELTLVKKVLKMKP 435 (442)
Q Consensus 391 ~~~~~~~L~~L~l~~c~~l~~p~-~l~~l~~L~~L~l~~n~l~~~p 435 (442)
.....++|+.|++++|.....|. .+..+++|++|++++|++..-.
T Consensus 195 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 195 GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 44445578888888888777744 4577888888888888886543
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=1.3e-20 Score=178.92 Aligned_cols=83 Identities=12% Similarity=0.184 Sum_probs=57.0
Q ss_pred ceeEEEecCCCCCCCChhhhhcccccceeccccccccc-----CCccccccCCCcEEeecCcccc----ccchhh-----
Q 013456 129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDS-----IPKSLGDLHSLETLDMKHTNIT----SLPKSI----- 194 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~l~----~lp~~i----- 194 (442)
+.|+...++......++..+..+++|++|++++|.++. ++..+..+++|++|+|++|.+. .+|..+
T Consensus 9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 45555555555566677778888888888888887764 3344667888888888887444 344444
Q ss_pred --hcccccceeeecccccc
Q 013456 195 --WKVKTLRHLYLNDIHLQ 211 (442)
Q Consensus 195 --~~l~~L~~L~l~~~~~~ 211 (442)
..+++|++|++++|.+.
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHTTCTTCCEEECCSCCCC
T ss_pred HHhhCCcccEEECCCCcCC
Confidence 56777777777777654
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=2.8e-18 Score=155.74 Aligned_cols=201 Identities=19% Similarity=0.168 Sum_probs=111.7
Q ss_pred hhcccccceecccccccccCCccccccCCCcEEeecCcccccc-chhhhcccccceeeeccccccccccCCCCCCCCccc
Q 013456 148 IGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNL 226 (442)
Q Consensus 148 l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 226 (442)
+++++++++++++++.++.+|..+. +++++|++++|.++.+ |..+..+++|++|++++|.+... +. .
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~---~------ 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV---D------ 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC---C------
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC---C------
Confidence 5567788888888888888877664 6788888888888755 45677788888888887765421 10 0
Q ss_pred ccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceE
Q 013456 227 RTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKEL 306 (442)
Q Consensus 227 ~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l 306 (442)
+.+++|+.|++++|.+ ..++..+..+++
T Consensus 74 ------------------~~l~~L~~L~Ls~N~l--~~l~~~~~~l~~-------------------------------- 101 (290)
T 1p9a_G 74 ------------------GTLPVLGTLDLSHNQL--QSLPLLGQTLPA-------------------------------- 101 (290)
T ss_dssp ------------------SCCTTCCEEECCSSCC--SSCCCCTTTCTT--------------------------------
T ss_pred ------------------CCCCcCCEEECCCCcC--CcCchhhccCCC--------------------------------
Confidence 2334455555555432 223333333444
Q ss_pred EeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcc
Q 013456 307 YLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELK 386 (442)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 386 (442)
|+.|++++|.++...+..+..+++|+.|++++|.+.+. +...+..+++|+.|++++|. ++
T Consensus 102 ------------------L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~ 161 (290)
T 1p9a_G 102 ------------------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNN-LT 161 (290)
T ss_dssp ------------------CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CS
T ss_pred ------------------CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCc-CC
Confidence 44444444444433334455555555555555544432 22223445555555555532 33
Q ss_pred eEEeC-CCccccccEEEeccCCCCCCCccCCCCCCCcEEEecccccc
Q 013456 387 EWTIE-EGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLK 432 (442)
Q Consensus 387 ~~~~~-~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~ 432 (442)
.++.. ...+++|+.|++++|.+..+|.++..+++|+.|++++|++.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 33322 23455666666666655555555555566666666666553
No 83
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=5.9e-21 Score=191.83 Aligned_cols=108 Identities=20% Similarity=0.286 Sum_probs=67.0
Q ss_pred CceeEEEEe--c----cCCCCCC-----cccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcce-EEe
Q 013456 323 PNLRIFTLS--L----SYLSEDP-----MPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKE-WTI 390 (442)
Q Consensus 323 ~~L~~L~l~--~----~~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~ 390 (442)
++|+.|+++ + +.++... ...+..+++|+.|++++ .+.+..+......+++|+.|++++|..... +..
T Consensus 397 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~ 475 (594)
T 2p1m_B 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH 475 (594)
T ss_dssp TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHH
T ss_pred CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHH
Confidence 677777777 2 2333211 11245677777777765 443333222112378888888888753222 111
Q ss_pred CCCccccccEEEeccCCCCCC--CccCCCCCCCcEEEeccccc
Q 013456 391 EEGAMTALEKLEIRNCPKLKM--PTELTKLSNLKELTLVKKVL 431 (442)
Q Consensus 391 ~~~~~~~L~~L~l~~c~~l~~--p~~l~~l~~L~~L~l~~n~l 431 (442)
....+++|+.|++++|+.... ...+..+++|++|++++|++
T Consensus 476 l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 476 VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 124589999999999988433 33456689999999999987
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=4.4e-18 Score=155.96 Aligned_cols=208 Identities=20% Similarity=0.139 Sum_probs=142.6
Q ss_pred eEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccc
Q 013456 131 LRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHL 210 (442)
Q Consensus 131 L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 210 (442)
+..+.+....+... ....++++|++|+++++.+..+| .+..+++|++|++++|.++.++. +..+++|++|++++|.+
T Consensus 21 ~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 21 AIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHHHHTTCSSTTSE-ECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC
T ss_pred HHHHHhCCCCcCce-ecHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC
Confidence 33334554444443 23567899999999999999987 68999999999999999998887 99999999999999987
Q ss_pred cccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCc
Q 013456 211 QMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPS 290 (442)
Q Consensus 211 ~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 290 (442)
... + .+..+++|+.|++.++..... + .+..+++|+.|++++|.+. .++. +..+++|+.|++++|.....+.
T Consensus 98 ~~~-~---~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~--~~~~-l~~l~~L~~L~l~~n~l~~~~~ 168 (308)
T 1h6u_A 98 KNV-S---AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT--NISP-LAGLTNLQYLSIGNAQVSDLTP 168 (308)
T ss_dssp SCC-G---GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC--CCGG-GGGCTTCCEEECCSSCCCCCGG
T ss_pred CCc-h---hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC--cCcc-ccCCCCccEEEccCCcCCCChh
Confidence 642 2 477888888888887776543 2 3777788888888877543 2222 6667777777777765443221
Q ss_pred cccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCC
Q 013456 291 DLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGG 370 (442)
Q Consensus 291 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 370 (442)
+..+ ++|+.|++++|.+++.. .+..+++|+.|++++|.+.+..+ +..
T Consensus 169 ------l~~l----------------------~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~~---l~~ 215 (308)
T 1h6u_A 169 ------LANL----------------------SKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP---LAN 215 (308)
T ss_dssp ------GTTC----------------------TTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCGG---GTT
T ss_pred ------hcCC----------------------CCCCEEECCCCccCcCh--hhcCCCCCCEEEccCCccCcccc---ccC
Confidence 2222 55666666666655322 25666666666666666654331 456
Q ss_pred CCcccEEEecccC
Q 013456 371 FPQLRVLKLWVLK 383 (442)
Q Consensus 371 ~~~L~~L~l~~~~ 383 (442)
+++|+.|++++|+
T Consensus 216 l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 216 TSNLFIVTLTNQT 228 (308)
T ss_dssp CTTCCEEEEEEEE
T ss_pred CCCCCEEEccCCe
Confidence 6666666666653
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=1.3e-20 Score=178.81 Aligned_cols=88 Identities=22% Similarity=0.237 Sum_probs=72.0
Q ss_pred hhcCceeEEEecCCCCCCC-----Chhhhhcccccceeccccccccc----CCccc-------cccCCCcEEeecCcccc
Q 013456 125 IRGYRLLRVLDLEDVYKPV-----LPETIGKLQLLRYVGLRRTFIDS----IPKSL-------GDLHSLETLDMKHTNIT 188 (442)
Q Consensus 125 ~~~~~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~L~~~~i~~----lp~~~-------~~l~~L~~L~L~~~~l~ 188 (442)
+..+++|++|++++|.+.. ++..+..+++|++|+|++|.+.. +|..+ ..+++|++|+|++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 4568999999999997765 33457789999999999976553 34444 68899999999999988
Q ss_pred c-----cchhhhcccccceeeeccccccc
Q 013456 189 S-----LPKSIWKVKTLRHLYLNDIHLQM 212 (442)
Q Consensus 189 ~-----lp~~i~~l~~L~~L~l~~~~~~~ 212 (442)
. +|..+..+++|++|++++|.+..
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 136 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGP 136 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence 5 78889999999999999998753
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=8.2e-18 Score=148.48 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=75.0
Q ss_pred eeEEEEecc-CCCCCCcccccCCCCCc-EEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEe-CCCcc-ccccE
Q 013456 325 LRIFTLSLS-YLSEDPMPVLGQLRELK-ALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTI-EEGAM-TALEK 400 (442)
Q Consensus 325 L~~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~-~~L~~ 400 (442)
|+.|++++| .++...+..+..+++|+ .|++++|.+. ..+...+.. ++|+.|++++|..++.++. ....+ ++|+.
T Consensus 132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~ 209 (239)
T 2xwt_C 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209 (239)
T ss_dssp EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence 447788877 77655555688888898 9999888876 333333444 7899999998765666643 35667 89999
Q ss_pred EEeccCCCCCCCccCCCCCCCcEEEeccc
Q 013456 401 LEIRNCPKLKMPTELTKLSNLKELTLVKK 429 (442)
Q Consensus 401 L~l~~c~~l~~p~~l~~l~~L~~L~l~~n 429 (442)
|++++|....+|.. .+++|+.|+++++
T Consensus 210 L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 210 LDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred EECCCCccccCChh--HhccCceeeccCc
Confidence 99999888777654 6788999998876
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=2.8e-19 Score=168.07 Aligned_cols=83 Identities=11% Similarity=0.077 Sum_probs=50.2
Q ss_pred ceeEEEecCCCCCCCCh-----hhhhccc-ccceecccccccccC-Ccccccc-----CCCcEEeecCcccccc-chhhh
Q 013456 129 RLLRVLDLEDVYKPVLP-----ETIGKLQ-LLRYVGLRRTFIDSI-PKSLGDL-----HSLETLDMKHTNITSL-PKSIW 195 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~-----~~l~~l~-~L~~L~L~~~~i~~l-p~~~~~l-----~~L~~L~L~~~~l~~l-p~~i~ 195 (442)
++|++|++++|.+...+ ..+..++ +|++|++++|.++.. +..++.+ ++|++|++++|.++.. +..+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 33777777777665554 4455666 677777777766654 3344443 6777777777776633 33232
Q ss_pred ----cc-cccceeeecccccc
Q 013456 196 ----KV-KTLRHLYLNDIHLQ 211 (442)
Q Consensus 196 ----~l-~~L~~L~l~~~~~~ 211 (442)
.+ ++|++|++++|.+.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHhCCCCccEEECcCCcCC
Confidence 33 66777777776654
No 88
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=1.5e-20 Score=188.96 Aligned_cols=324 Identities=15% Similarity=0.096 Sum_probs=187.1
Q ss_pred ccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-----hhhhhcccccceeccccc-cccc
Q 013456 93 QFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-----PETIGKLQLLRYVGLRRT-FIDS 166 (442)
Q Consensus 93 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-----~~~l~~l~~L~~L~L~~~-~i~~ 166 (442)
.+++|+.|.+.++.........+..+ ...+++|++|+++++. ..+ +..+.++++|++|++++| .+..
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~------~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~ 226 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHF------PDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK 226 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGS------CTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHH------hhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH
Confidence 56677777766543221111111111 1245666666666554 111 122234566666666665 3444
Q ss_pred CCccccccCCCcEEeecCc-------------------------------cccccchhhhcccccceeeecccccccccc
Q 013456 167 IPKSLGDLHSLETLDMKHT-------------------------------NITSLPKSIWKVKTLRHLYLNDIHLQMSVQ 215 (442)
Q Consensus 167 lp~~~~~l~~L~~L~L~~~-------------------------------~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~ 215 (442)
+|..+.++++|++|++..+ ....++..+..+++|++|++++|.+.....
T Consensus 227 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l 306 (594)
T 2p1m_B 227 LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL 306 (594)
T ss_dssp HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHH
T ss_pred HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHH
Confidence 4555555556666654332 222344555567888888888877543221
Q ss_pred CCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEe---------eccccchhHHhhcCCcccccceeeccccc
Q 013456 216 KPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLIC---------NIASLGKITNLIQGLTSLESLRLRSINDF 286 (442)
Q Consensus 216 ~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~---------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 286 (442)
...+..+++|+.|++.++............+++|+.|++.. +..+...+......+++|+.|.+.++...
T Consensus 307 -~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~ 385 (594)
T 2p1m_B 307 -VKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385 (594)
T ss_dssp -HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC
T ss_pred -HHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC
Confidence 11245778888888776622112222233578888888833 23332223333334778888866655443
Q ss_pred cCCcccccccc-CCcCCCceEEec--c---ccCCC-----cc----cccCCCceeEEEEeccCCCCCCcccccC-CCCCc
Q 013456 287 YVPSDLAIGSL-NNHKELKELYLL--G---RLPGP-----LK----LHELPPNLRIFTLSLSYLSEDPMPVLGQ-LRELK 350 (442)
Q Consensus 287 ~~~~~~~~~~~-~~~~~L~~l~l~--~---~~~~~-----~~----~~~~~~~L~~L~l~~~~~~~~~~~~l~~-l~~L~ 350 (442)
... ...+ ..+++|+.|++. + +.... .. +.. +++|+.|++++ .+++..+..++. +++|+
T Consensus 386 ~~~----~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~ 459 (594)
T 2p1m_B 386 NAA----LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH-CKDLRRLSLSG-LLTDKVFEYIGTYAKKME 459 (594)
T ss_dssp HHH----HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH-CTTCCEEECCS-SCCHHHHHHHHHHCTTCC
T ss_pred HHH----HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh-CCCccEEeecC-cccHHHHHHHHHhchhcc
Confidence 211 1122 246889999998 3 11111 01 223 37999999977 566555555655 89999
Q ss_pred EEEeCcccccCcccccCCCCCCcccEEEecccCCcce-EEeCCCccccccEEEeccCCCCCC-CccC-CCCCCCcEEEec
Q 013456 351 ALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKE-WTIEEGAMTALEKLEIRNCPKLKM-PTEL-TKLSNLKELTLV 427 (442)
Q Consensus 351 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~L~~L~l~~c~~l~~-p~~l-~~l~~L~~L~l~ 427 (442)
.|++++|.+++.........+++|+.|++++|+.... +......+++|+.|++++|+.... ...+ ..+++|+...+.
T Consensus 460 ~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 460 MLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp EEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred EeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence 9999999987655443235699999999999976222 222345689999999999987432 2233 457888777776
Q ss_pred ccc
Q 013456 428 KKV 430 (442)
Q Consensus 428 ~n~ 430 (442)
.+.
T Consensus 540 ~~~ 542 (594)
T 2p1m_B 540 ERG 542 (594)
T ss_dssp SSS
T ss_pred CCC
Confidence 653
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=5.4e-18 Score=158.42 Aligned_cols=78 Identities=19% Similarity=0.123 Sum_probs=41.8
Q ss_pred CceeEEEEec-cCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEE
Q 013456 323 PNLRIFTLSL-SYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKL 401 (442)
Q Consensus 323 ~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 401 (442)
.+|+.+++.+ |.++......|..+++|+.|++++|.+... + ...|.+|+.|.+.++..++.+|. ...+++|+.+
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l-p---~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l 251 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL-P---SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEA 251 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC-C---SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEE
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc-C---hhhhccchHhhhccCCCcCcCCC-chhCcChhhC
Confidence 3556666654 344433334456666666666666665432 1 12355566666655555555552 3456666666
Q ss_pred Eecc
Q 013456 402 EIRN 405 (442)
Q Consensus 402 ~l~~ 405 (442)
++.+
T Consensus 252 ~l~~ 255 (350)
T 4ay9_X 252 SLTY 255 (350)
T ss_dssp ECSC
T ss_pred cCCC
Confidence 6543
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=3.5e-18 Score=150.88 Aligned_cols=56 Identities=16% Similarity=0.091 Sum_probs=33.1
Q ss_pred CceeEEEEeccC-CCCCCcccccCC-CCCcEEEeCcccccCcccccCCCCCCcccEEEeccc
Q 013456 323 PNLRIFTLSLSY-LSEDPMPVLGQL-RELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVL 382 (442)
Q Consensus 323 ~~L~~L~l~~~~-~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 382 (442)
++|+.|++++|. ++...+..+..+ ++|+.|++++|.+.... ...|++|+.|.+.++
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~----~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP----SKGLEHLKELIARNT 236 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC----CTTCTTCSEEECTTC
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC----hhHhccCceeeccCc
Confidence 466666666663 554444556666 67777777776665321 125666666666654
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=158.16 Aligned_cols=112 Identities=16% Similarity=0.130 Sum_probs=76.4
Q ss_pred hhhcCceeEEEecCCCCCC-CChhhh--hcccccceecccccccccC-C----ccccccCCCcEEeecCccccccc-hhh
Q 013456 124 AIRGYRLLRVLDLEDVYKP-VLPETI--GKLQLLRYVGLRRTFIDSI-P----KSLGDLHSLETLDMKHTNITSLP-KSI 194 (442)
Q Consensus 124 ~~~~~~~L~~L~l~~~~~~-~l~~~l--~~l~~L~~L~L~~~~i~~l-p----~~~~~l~~L~~L~L~~~~l~~lp-~~i 194 (442)
.+..+++|++|++++|.+. ..|..+ ..+++|++|++++|.+... | ..+..+++|++|++++|.+..++ ..+
T Consensus 86 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 165 (310)
T 4glp_A 86 RVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV 165 (310)
T ss_dssp HHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC
T ss_pred HhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh
Confidence 3344677899999888765 445555 7888899999998887642 2 23456888899999888888554 567
Q ss_pred hcccccceeeecccccccc--ccCCCCCCCCcccccccccccC
Q 013456 195 WKVKTLRHLYLNDIHLQMS--VQKPFVKPSLTNLRTLWGLSIG 235 (442)
Q Consensus 195 ~~l~~L~~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~~~~~~ 235 (442)
..+++|++|++++|.+.+. .+.+..++.+++|++|++.++.
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 7888888898888876542 2222223455556655555543
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=153.32 Aligned_cols=162 Identities=16% Similarity=0.091 Sum_probs=100.5
Q ss_pred hccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCC
Q 013456 244 LENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPP 323 (442)
Q Consensus 244 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 323 (442)
+..+++|+.|++++|.+. ...+..+..+++|+.|++++|........ +.......+ +
T Consensus 141 ~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------~~~~~~~~l-~ 197 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGL---------------------MAALCPHKF-P 197 (310)
T ss_dssp TTBCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHH---------------------HTTSCTTSS-C
T ss_pred hhhccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhh---------------------hHHHhhhcC-C
Confidence 345666777777766553 33445566666777777766653221000 000111233 5
Q ss_pred ceeEEEEeccCCCCCCcc----cccCCCCCcEEEeCcccccCccccc--CCCCCCcccEEEecccCCcceEEeCCCcccc
Q 013456 324 NLRIFTLSLSYLSEDPMP----VLGQLRELKALRLFAHSYIGEKMTC--GNGGFPQLRVLKLWVLKELKEWTIEEGAMTA 397 (442)
Q Consensus 324 ~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 397 (442)
+|++|++++|.++. .+. .++.+++|+.|++++|.+.+..+.. ....+++|++|++++|. ++.++... +++
T Consensus 198 ~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~--~~~ 273 (310)
T 4glp_A 198 AIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGL--PAK 273 (310)
T ss_dssp CCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCC--CSC
T ss_pred CCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhh--cCC
Confidence 67777777776652 222 2466788888888888776653322 12223688888888764 44554433 478
Q ss_pred ccEEEeccCCCCCCCccCCCCCCCcEEEeccccccc
Q 013456 398 LEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKM 433 (442)
Q Consensus 398 L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~ 433 (442)
|+.|++++|.+..+|. +..+++|++|++++|+++.
T Consensus 274 L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 274 LRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 9999999998887755 6788999999999998853
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=5e-19 Score=166.30 Aligned_cols=255 Identities=15% Similarity=0.086 Sum_probs=152.7
Q ss_pred EecCCCCCCCC-hhhhhcccccceecccccccccCC-----ccccccC-CCcEEeecCcccccc-chhhhcc-----ccc
Q 013456 134 LDLEDVYKPVL-PETIGKLQLLRYVGLRRTFIDSIP-----KSLGDLH-SLETLDMKHTNITSL-PKSIWKV-----KTL 200 (442)
Q Consensus 134 L~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~i~~lp-----~~~~~l~-~L~~L~L~~~~l~~l-p~~i~~l-----~~L 200 (442)
++++++.+... |..+...++|++|++++|.++..+ +.+..++ +|++|++++|.+... +..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 56777766544 444555566999999999888775 4567777 899999999988843 5556665 889
Q ss_pred ceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccc-cCcceeeEEeeccccch---hHHhhcC-Cccc
Q 013456 201 RHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENL-SDLKNLGLICNIASLGK---ITNLIQG-LTSL 275 (442)
Q Consensus 201 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~---~~~~l~~-l~~L 275 (442)
++|++++|.+....+. .+...+..+ ++|+.|++++|.+.... +...+.. .++|
T Consensus 83 ~~L~Ls~n~l~~~~~~----------------------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 140 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSD----------------------ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140 (362)
T ss_dssp CEEECCSSCGGGSCHH----------------------HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTC
T ss_pred cEEECcCCcCChHHHH----------------------HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCce
Confidence 9999988876532211 122334555 79999999999765222 2233444 3699
Q ss_pred ccceeeccccccCCccccccccCCcC-CCceEEeccccCCCc-------ccccCCCceeEEEEeccCCCCCC----cccc
Q 013456 276 ESLRLRSINDFYVPSDLAIGSLNNHK-ELKELYLLGRLPGPL-------KLHELPPNLRIFTLSLSYLSEDP----MPVL 343 (442)
Q Consensus 276 ~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~----~~~l 343 (442)
+.|++++|.+...........+...+ +|++|+++++..... .+...+++|+.|++++|.+++.. +..+
T Consensus 141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 220 (362)
T 3goz_A 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF 220 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence 99999998765432222122223333 677777766532111 12222246777777777665432 2233
Q ss_pred cC-CCCCcEEEeCcccccCccc---ccCCCCCCcccEEEecccC---C----cceEEeCCCccccccEEEeccCCCCC
Q 013456 344 GQ-LRELKALRLFAHSYIGEKM---TCGNGGFPQLRVLKLWVLK---E----LKEWTIEEGAMTALEKLEIRNCPKLK 410 (442)
Q Consensus 344 ~~-l~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~---~----l~~~~~~~~~~~~L~~L~l~~c~~l~ 410 (442)
.. .++|+.|++++|.+.+... ...+..+++|+.|++++|. . +..+......+++|+.|++++|....
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 33 3467777777776655332 2234566677777777654 1 11122233455666667776666443
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=5.4e-17 Score=151.65 Aligned_cols=54 Identities=19% Similarity=0.055 Sum_probs=31.7
Q ss_pred CceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecc
Q 013456 323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWV 381 (442)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 381 (442)
++|+.|++++|.++...... +.+|+.|.+.++......+ .+..+++|+.+++.+
T Consensus 202 ~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP--~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 202 SGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP--TLEKLVALMEASLTY 255 (350)
T ss_dssp ECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC--CTTTCCSCCEEECSC
T ss_pred cccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC--CchhCcChhhCcCCC
Confidence 67777888777776433323 4455555555443333333 256677777777764
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=2.5e-16 Score=139.94 Aligned_cols=177 Identities=21% Similarity=0.247 Sum_probs=104.2
Q ss_pred ceeEEEecCCCCCCCChhhhhcccccceecccccccccCC-ccccccCCCcEEeecCccccccch-hhhcccccceeeec
Q 013456 129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLN 206 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~ 206 (442)
...++++++++.+..+|..+. ++|++|++++|.+..++ ..++++++|++|++++|.++.++. .+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 456778888887877777654 57888888888777664 357778888888888888775544 46777888888887
Q ss_pred cccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456 207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF 286 (442)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 286 (442)
+|.+....+. .++. +++|+.|++++|.+. ...+..+..+++|+.|++++|.+.
T Consensus 92 ~n~l~~~~~~--~~~~------------------------l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 92 NNQLASLPLG--VFDH------------------------LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp TSCCCCCCTT--TTTT------------------------CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcccccChh--Hhcc------------------------cCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCC
Confidence 7766532211 2333 444444444444332 112222344555555555554433
Q ss_pred cCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCccccc
Q 013456 287 YVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYI 360 (442)
Q Consensus 287 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 360 (442)
..+.. .+..+ ++|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 145 ~~~~~-------------------------~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 145 SIPAG-------------------------AFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCCTT-------------------------TTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ccCHH-------------------------HcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 22211 12222 45666666666665544445666666666666666554
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=1.5e-16 Score=144.49 Aligned_cols=149 Identities=20% Similarity=0.167 Sum_probs=95.4
Q ss_pred hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456 126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL 205 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 205 (442)
..+++|+.|+++++.+..++ .+..+++|++|++++|.+..++. ++++++|++|++++|.++.+|. +..+++|++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 34566777777777666664 36667777777777777776655 6777777777777777766544 667777777777
Q ss_pred ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND 285 (442)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 285 (442)
++|.+... + .+..+++|+.|++.++..... ..+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+
T Consensus 120 ~~n~i~~~-~---~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~--~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 120 EHNGISDI-N---GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS--DIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp TTSCCCCC-G---GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCC
T ss_pred CCCcCCCC-h---hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc--cchh-hcCCCccCEEECCCCcC
Confidence 77766532 1 355666666666666655443 45666667777777666443 2222 56666677777766654
Q ss_pred c
Q 013456 286 F 286 (442)
Q Consensus 286 ~ 286 (442)
.
T Consensus 191 ~ 191 (291)
T 1h6t_A 191 S 191 (291)
T ss_dssp C
T ss_pred C
Confidence 4
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=1.6e-16 Score=141.13 Aligned_cols=176 Identities=23% Similarity=0.218 Sum_probs=130.7
Q ss_pred ccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChh-hhhcccccceecccccccccCCc-ccc
Q 013456 95 EYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIPK-SLG 172 (442)
Q Consensus 95 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp~-~~~ 172 (442)
...+.+...++....+|... .+.++.|+++++.+..++. .+.++++|++|++++|.+..++. .+.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~-------------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 80 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI-------------PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC-------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCCeEEecCCCCccccCCCC-------------CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence 44566777776666666531 3679999999998888765 68999999999999999988754 579
Q ss_pred ccCCCcEEeecCccccccch-hhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcc
Q 013456 173 DLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLK 251 (442)
Q Consensus 173 ~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~ 251 (442)
++++|++|++++|.++.+|. .+..+++|++|++++|.+....+. .+..+++|+.|++.++......+..++.+++|+
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG--VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChh--HhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence 99999999999999997775 568999999999999988743222 367778888888777766655555566777777
Q ss_pred eeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456 252 NLGLICNIASLGKITNLIQGLTSLESLRLRSINDF 286 (442)
Q Consensus 252 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 286 (442)
.|++++|.+. ...+..+..+++|+.|++++|...
T Consensus 159 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 159 TLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp EEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred EEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCcee
Confidence 7777776554 333345556666666666665543
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=1.3e-16 Score=158.61 Aligned_cols=149 Identities=19% Similarity=0.187 Sum_probs=101.1
Q ss_pred hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456 126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL 205 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 205 (442)
..+..+..+.+..+.+..++ .+..+++|++|++++|.+..+| .++.+++|++|+|++|.+..++. +..+++|+.|++
T Consensus 18 ~~l~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 18 DAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEEC
T ss_pred HHHHHHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEEC
Confidence 34455555666665555443 3566778888888888777776 47778888888888888877766 778888888888
Q ss_pred ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND 285 (442)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 285 (442)
++|.+.. ++ .+..+++|+.|++..+..... ..+..+++|+.|+++.|.+. .+ ..+..+++|+.|+|++|.+
T Consensus 95 s~N~l~~-l~---~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~--~l-~~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 95 DENKIKD-LS---SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT--DI-TVLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp CSSCCCC-CT---TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC--CC-GGGGSCTTCSEEECCSSCC
T ss_pred cCCCCCC-Ch---hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccC--Cc-hhhcccCCCCEEECcCCcC
Confidence 8887653 22 467777777777777665542 34667777777777777543 22 4566677777777776654
Q ss_pred c
Q 013456 286 F 286 (442)
Q Consensus 286 ~ 286 (442)
.
T Consensus 166 ~ 166 (605)
T 1m9s_A 166 S 166 (605)
T ss_dssp C
T ss_pred C
Confidence 4
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=1.6e-16 Score=158.09 Aligned_cols=167 Identities=22% Similarity=0.186 Sum_probs=96.4
Q ss_pred cCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeec
Q 013456 127 GYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLN 206 (442)
Q Consensus 127 ~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 206 (442)
.+++|+.|+++++.+..++ .+..+++|++|+|++|.+..+|. +..+++|++|+|++|.+..+| .+..+++|++|+++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 3556666666666665554 35566666666666666666554 666666666666666666554 45666666666666
Q ss_pred cccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456 207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF 286 (442)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 286 (442)
+|.+... + .+..+++|+.|++..+..... ..+..+++|+.|++++|.+. .++. +..+++|+.|+|++|.+.
T Consensus 118 ~N~l~~l-~---~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~--~~~~-l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 118 HNGISDI-N---GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS--DIVP-LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp TSCCCCC-G---GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCC
T ss_pred CCCCCCC-c---cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC--Cchh-hccCCCCCEEECcCCCCC
Confidence 6665532 1 255666666666666555443 44666666666666666543 2222 566666666666666544
Q ss_pred cCCccccccccCCcCCCceEEeccc
Q 013456 287 YVPSDLAIGSLNNHKELKELYLLGR 311 (442)
Q Consensus 287 ~~~~~~~~~~~~~~~~L~~l~l~~~ 311 (442)
.. ..+..+++|+.|+++++
T Consensus 189 ~l------~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 189 DL------RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp BC------GGGTTCTTCSEEECCSE
T ss_pred CC------hHHccCCCCCEEEccCC
Confidence 32 12344455555555544
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=2.3e-16 Score=155.27 Aligned_cols=190 Identities=16% Similarity=0.143 Sum_probs=128.3
Q ss_pred ceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccc
Q 013456 129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDI 208 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 208 (442)
.+|++|+++++.+..+|..+. ++|++|++++|.++.+| +.+++|++|++++|.++.+|. +.+ +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 489999999888888887663 78999999999998888 457889999999999888888 555 8999999998
Q ss_pred cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccC
Q 013456 209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYV 288 (442)
Q Consensus 209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 288 (442)
.+.+ +|. .+++|+.|++.++.... ++. .+++|+.|++++|.+. .++. +. ++|+.|++++|.+...
T Consensus 131 ~l~~-lp~-----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~--~lp~-l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 131 QLTM-LPE-----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT--FLPE-LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CCSC-CCC-----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--CCCC-CC--TTCCEEECCSSCCSSC
T ss_pred cCCC-CCC-----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC--Ccch-hh--CCCCEEECcCCCCCch
Confidence 8764 332 46677777766665543 222 3556666666666443 2343 33 5666666666554432
Q ss_pred CccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccc
Q 013456 289 PSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMT 365 (442)
Q Consensus 289 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 365 (442)
+. + .. + +...++.|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..+.
T Consensus 196 p~-~-----~~--~---------------L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 196 PA-V-----PV--R---------------NHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CC-C-----C-------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred hh-H-----HH--h---------------hhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 22 1 00 0 0111133488888888887 4666777788999999988888765443
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=5e-16 Score=140.99 Aligned_cols=173 Identities=21% Similarity=0.230 Sum_probs=143.5
Q ss_pred cccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccc
Q 013456 92 KQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSL 171 (442)
Q Consensus 92 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~ 171 (442)
..+++++.|.+.++.....+. +..+++|++|++++|.+..++. +..+++|++|++++|.+..+|. +
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~------------~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l 108 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG------------IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-L 108 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT------------GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-G
T ss_pred hhcCcccEEEccCCCcccChh------------HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-h
Confidence 467888888888775544432 3568999999999999988877 8899999999999999988765 8
Q ss_pred cccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcc
Q 013456 172 GDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLK 251 (442)
Q Consensus 172 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~ 251 (442)
+.+++|++|++++|.++.+ ..+..+++|++|++++|.+... + .++.+++|+.|++.++......+ +..+++|+
T Consensus 109 ~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~---~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~ 181 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-T---VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181 (291)
T ss_dssp TTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-G---GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred ccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-h---hhccCCCCCEEEccCCccccchh--hcCCCccC
Confidence 9999999999999999987 4688999999999999988754 2 48899999999999887766544 88999999
Q ss_pred eeeEEeeccccchhHHhhcCCcccccceeeccccccC
Q 013456 252 NLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYV 288 (442)
Q Consensus 252 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 288 (442)
.|++++|.+. .++ .+..+++|+.|++++|.....
T Consensus 182 ~L~L~~N~i~--~l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 182 NLYLSKNHIS--DLR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp EEECCSSCCC--BCG-GGTTCTTCSEEEEEEEEEECC
T ss_pred EEECCCCcCC--CCh-hhccCCCCCEEECcCCcccCC
Confidence 9999999664 344 478899999999999876553
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=1.8e-16 Score=135.37 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=33.3
Q ss_pred ceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCcccc-ccchhhhcccccceeeecc
Q 013456 129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNIT-SLPKSIWKVKTLRHLYLND 207 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~ 207 (442)
++|+.|+++++.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.++ ..|..+..+++|++|++++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 34444444444444433 3444444444444444333322 3344444444444444443 2333344444444444444
Q ss_pred ccc
Q 013456 208 IHL 210 (442)
Q Consensus 208 ~~~ 210 (442)
|.+
T Consensus 122 n~i 124 (197)
T 4ezg_A 122 SAH 124 (197)
T ss_dssp SBC
T ss_pred Ccc
Confidence 433
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=2.8e-15 Score=127.88 Aligned_cols=155 Identities=15% Similarity=0.163 Sum_probs=115.7
Q ss_pred ccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCc
Q 013456 245 ENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPN 324 (442)
Q Consensus 245 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 324 (442)
+.+++|+.|++++|.+. .++ .+..+++|+.|++++|.... ...+..+ ++
T Consensus 41 ~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~---------------------------~~~l~~l-~~ 89 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHATN---------------------------YNPISGL-SN 89 (197)
T ss_dssp HHHHTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCSC---------------------------CGGGTTC-TT
T ss_pred hhcCCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCCc---------------------------chhhhcC-CC
Confidence 45667777777766443 333 45566667777776653221 1123444 78
Q ss_pred eeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEec
Q 013456 325 LRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIR 404 (442)
Q Consensus 325 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 404 (442)
|++|++++|.+++..+..++.+++|+.|++++|.+.+..+.. +..+++|++|++++|..+..++ ....+++|+.|+++
T Consensus 90 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 90 LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp CCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred CCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC
Confidence 999999999988767778999999999999999987655443 7789999999999987677776 56789999999999
Q ss_pred cCCCCCCCccCCCCCCCcEEEeccccccc
Q 013456 405 NCPKLKMPTELTKLSNLKELTLVKKVLKM 433 (442)
Q Consensus 405 ~c~~l~~p~~l~~l~~L~~L~l~~n~l~~ 433 (442)
+|.+...+ .+..+++|++|++++|++..
T Consensus 168 ~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 168 FDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred CCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 99887766 78899999999999999864
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=1e-15 Score=131.94 Aligned_cols=77 Identities=25% Similarity=0.373 Sum_probs=40.7
Q ss_pred EEecCCCCCCCChhhhhcccccceecccccccccCCcc-ccccCCCcEEeecCccccccchh-hhcccccceeeeccccc
Q 013456 133 VLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS-LGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYLNDIHL 210 (442)
Q Consensus 133 ~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~ 210 (442)
.++++++.+..+|..+ .++|++|++++|.+..+|.. ++++++|++|++++|.++.+|.. +..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 4445555555555433 23555666666555555432 45555666666666655554443 34555566666655554
Q ss_pred c
Q 013456 211 Q 211 (442)
Q Consensus 211 ~ 211 (442)
.
T Consensus 89 ~ 89 (208)
T 2o6s_A 89 Q 89 (208)
T ss_dssp C
T ss_pred C
Confidence 4
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=6.2e-16 Score=138.15 Aligned_cols=149 Identities=20% Similarity=0.183 Sum_probs=100.9
Q ss_pred hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456 126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL 205 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 205 (442)
..+.++..++++++.+..++ .+..+++|++|++++|.+..+| .++.+++|++|++++|.++.+|. +..+++|++|++
T Consensus 16 ~~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 16 PGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 45666777777777777766 5677788888888888777776 57778888888888888877766 777888888888
Q ss_pred ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND 285 (442)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 285 (442)
++|.+.+. +. +.. ++|+.|++.++..... ..+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+
T Consensus 93 ~~N~l~~l-~~---~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~--~~~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 93 NRNRLKNL-NG---IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK--SIV-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp CSSCCSCC-TT---CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC--BCG-GGGGCTTCCEEECTTSCC
T ss_pred CCCccCCc-Cc---ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC--CCh-HHccCCCCCEEECCCCcC
Confidence 88776542 21 222 6677777666655432 34666777777777766543 222 456667777777776655
Q ss_pred cc
Q 013456 286 FY 287 (442)
Q Consensus 286 ~~ 287 (442)
..
T Consensus 163 ~~ 164 (263)
T 1xeu_A 163 TN 164 (263)
T ss_dssp CB
T ss_pred cc
Confidence 43
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=5.9e-15 Score=145.21 Aligned_cols=184 Identities=17% Similarity=0.162 Sum_probs=118.0
Q ss_pred ccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCccccccccc
Q 013456 153 LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGL 232 (442)
Q Consensus 153 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~ 232 (442)
+|++|++++|.+..+|..+. ++|++|++++|.++.+| ..+++|++|++++|.+.+ +|. +..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~---l~~---------- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE---LPA---------- 120 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC---CCT----------
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch---hhc----------
Confidence 89999999999988888763 78999999999999888 457899999999887653 221 111
Q ss_pred ccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecccc
Q 013456 233 SIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRL 312 (442)
Q Consensus 233 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 312 (442)
+|+.|++++|.+. .++. .+++|+.|++++|.+...+.
T Consensus 121 ----------------~L~~L~Ls~N~l~--~lp~---~l~~L~~L~Ls~N~l~~lp~---------------------- 157 (571)
T 3cvr_A 121 ----------------SLKHLDVDNNQLT--MLPE---LPALLEYINADNNQLTMLPE---------------------- 157 (571)
T ss_dssp ----------------TCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCSCCCC----------------------
T ss_pred ----------------CCCEEECCCCcCC--CCCC---cCccccEEeCCCCccCcCCC----------------------
Confidence 4556666655443 2333 45667777776665432111
Q ss_pred CCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcc-------cEEEecccCCc
Q 013456 313 PGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQL-------RVLKLWVLKEL 385 (442)
Q Consensus 313 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~l 385 (442)
.+++|+.|++++|.+++ ++. +. ++|+.|++++|.+.. .+. +.. +| +.|++++| .+
T Consensus 158 --------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-lp~--~~~--~L~~~~~~L~~L~Ls~N-~l 219 (571)
T 3cvr_A 158 --------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES-LPA--VPV--RNHHSEETEIFFRCREN-RI 219 (571)
T ss_dssp --------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS-CCC--CC----------CCEEEECCSS-CC
T ss_pred --------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc-hhh--HHH--hhhcccccceEEecCCC-cc
Confidence 22677888888887775 444 44 788888888887763 222 221 45 66666664 34
Q ss_pred ceEEeCCCccccccEEEeccCCCCCC-CccCC
Q 013456 386 KEWTIEEGAMTALEKLEIRNCPKLKM-PTELT 416 (442)
Q Consensus 386 ~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~ 416 (442)
+.++.....+++|+.|++++|+.... |..+.
T Consensus 220 ~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 220 THIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CCCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred eecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 45555455566666666666665543 44443
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=2.8e-15 Score=133.94 Aligned_cols=150 Identities=20% Similarity=0.152 Sum_probs=119.7
Q ss_pred hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456 126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL 205 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 205 (442)
..+++|++|++++|.+..++ .+..+++|++|++++|.+..+|. ++++++|++|++++|.++.+|.... ++|++|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEEC
T ss_pred hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEc
Confidence 45788899999988888887 68888899999999988888876 8888999999999998887776443 88999999
Q ss_pred ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND 285 (442)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 285 (442)
++|.+.+. + .++.+++|+.|++.++..... ..++.+++|+.|++++|.+.. . ..+..+++|+.|++++|..
T Consensus 114 ~~N~l~~~-~---~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~--~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 114 DNNELRDT-D---SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN--T-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CSSCCSBS-G---GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB--C-TTSTTCCCCCEEEEEEEEE
T ss_pred cCCccCCC-h---hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc--h-HHhccCCCCCEEeCCCCcc
Confidence 98887642 2 377888899998888876553 368888999999999886652 2 5677888899999988876
Q ss_pred ccC
Q 013456 286 FYV 288 (442)
Q Consensus 286 ~~~ 288 (442)
...
T Consensus 185 ~~~ 187 (263)
T 1xeu_A 185 VNE 187 (263)
T ss_dssp ECC
T ss_pred cCC
Confidence 544
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=3.9e-15 Score=129.21 Aligned_cols=129 Identities=23% Similarity=0.259 Sum_probs=70.9
Q ss_pred ceeEEEecCCCCCCCChh-hhhcccccceecccccccccC-CccccccCCCcEEeecCccccccchh-hhcccccceeee
Q 013456 129 RLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYL 205 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 205 (442)
+.|+.|++++|.+..++. .+..+++|++|+|++|.+..+ |..+.++++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 346666666665555544 455566666666666665554 44556666666666666666655544 345666666666
Q ss_pred ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeec
Q 013456 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNI 259 (442)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 259 (442)
++|.+....+. .+..+++|+.|++.++......+..+..+++|+.|++++|.
T Consensus 112 ~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 112 NANKINCLRVD--AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEeCHH--HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 66655433222 35555555555555555444444445555555555555443
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=3.2e-17 Score=162.09 Aligned_cols=203 Identities=18% Similarity=0.093 Sum_probs=104.6
Q ss_pred cccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcc
Q 013456 172 GDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLK 251 (442)
Q Consensus 172 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~ 251 (442)
..+++|+.|+|++|.++.+|..++.|++|+.|++++|......+. .+..+ ...+..+..++.+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~--------ll~~~-----~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL--------LMRAL-----DPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH--------HHHHH-----CTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH--------HHHhc-----ccccCCHHHHHHHHhcc
Confidence 557788888888888888888888888888888866532111110 00001 11122444555566666
Q ss_pred eee-EEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEE
Q 013456 252 NLG-LICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTL 330 (442)
Q Consensus 252 ~L~-l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l 330 (442)
.|+ ++.+. +.+|+.+.+.+|.+...+. ..|+.|++
T Consensus 413 ~L~~l~~n~------------~~~L~~l~l~~n~i~~l~~--------------------------------~~L~~L~L 448 (567)
T 1dce_A 413 AVDPMRAAY------------LDDLRSKFLLENSVLKMEY--------------------------------ADVRVLHL 448 (567)
T ss_dssp HHCGGGHHH------------HHHHHHHHHHHHHHHHHHH--------------------------------TTCSEEEC
T ss_pred cCcchhhcc------------cchhhhhhhhcccccccCc--------------------------------cCceEEEe
Confidence 555 33221 1223333333332211100 23445555
Q ss_pred eccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCC
Q 013456 331 SLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLK 410 (442)
Q Consensus 331 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~ 410 (442)
++|.+++ +|. ++.+++|+.|++++|.+. ..+. .++.+++|+.|++++| .++.++ ..+.+++|+.|++++|.+..
T Consensus 449 s~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N~l~~ 522 (567)
T 1dce_A 449 AHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNRLQQ 522 (567)
T ss_dssp TTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSCCCS
T ss_pred cCCCCCC-CcC-ccccccCcEeecCccccc-ccch-hhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCCCCCC
Confidence 5555543 232 555555555555555554 2222 2445555555555554 233344 44555666666666666555
Q ss_pred C--CccCCCCCCCcEEEeccccccccCCC
Q 013456 411 M--PTELTKLSNLKELTLVKKVLKMKPED 437 (442)
Q Consensus 411 ~--p~~l~~l~~L~~L~l~~n~l~~~p~~ 437 (442)
. |..+..+++|+.|++++|+++.+|+.
T Consensus 523 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 523 SAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp SSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 5 55666666666666666666665553
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=4.9e-15 Score=128.61 Aligned_cols=129 Identities=16% Similarity=0.180 Sum_probs=82.2
Q ss_pred eeEEEecCCCCCCCChh--hhhcccccceecccccccccCCc-cccccCCCcEEeecCccccccchh-hhcccccceeee
Q 013456 130 LLRVLDLEDVYKPVLPE--TIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYL 205 (442)
Q Consensus 130 ~L~~L~l~~~~~~~l~~--~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 205 (442)
.+++|++++|.+..++. .+..+++|++|++++|.+..++. .++++++|++|++++|.++.++.. +..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 45677777776666532 36667777777777777766643 566777777777777777655443 566777777777
Q ss_pred ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeecc
Q 013456 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIA 260 (442)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 260 (442)
++|.+....+. .+..+++|+.|++.++......+..+..+++|+.|++++|..
T Consensus 113 s~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 113 RSNRITCVGND--SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TTSCCCCBCTT--SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCcCCeECHh--HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 77766644333 356666666666666665555555666666666666666544
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=1.8e-14 Score=123.96 Aligned_cols=56 Identities=25% Similarity=0.316 Sum_probs=41.8
Q ss_pred cceecccccccccCCccccccCCCcEEeecCccccccchh-hhcccccceeeecccccc
Q 013456 154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYLNDIHLQ 211 (442)
Q Consensus 154 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~ 211 (442)
-+.++.+++.+..+|..+ .++|++|++++|.++.++.. +..+++|++|++++|.+.
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 65 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ 65 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC
Confidence 356677777777887655 45788888888888876654 567888888888887665
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=1.9e-14 Score=119.39 Aligned_cols=136 Identities=23% Similarity=0.236 Sum_probs=102.3
Q ss_pred hcCceeEEEecCCCCCC--CChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccc-cchhhhcccccce
Q 013456 126 RGYRLLRVLDLEDVYKP--VLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITS-LPKSIWKVKTLRH 202 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~ 202 (442)
...++|++|++++|.+. .+|..+..+++|++|++++|.+..+ ..++.+++|++|++++|.++. +|..+..+++|++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 45688999999999887 8888889999999999999999888 778999999999999999996 7777778999999
Q ss_pred eeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhH----HhhcCCcccccc
Q 013456 203 LYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKIT----NLIQGLTSLESL 278 (442)
Q Consensus 203 L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~~L~~L 278 (442)
|++++|.+.+. +. +..+..+++|+.|++++|.+. ..+ ..+..+++|+.|
T Consensus 100 L~Ls~N~l~~~-~~------------------------~~~l~~l~~L~~L~l~~N~l~--~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 100 LNLSGNKLKDI-ST------------------------LEPLKKLECLKSLDLFNCEVT--NLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp EECBSSSCCSS-GG------------------------GGGGSSCSCCCEEECCSSGGG--TSTTHHHHHHTTCSSCCEE
T ss_pred EeccCCccCcc-hh------------------------HHHHhcCCCCCEEEeeCCcCc--chHHHHHHHHHhCccCcEe
Confidence 99999976532 11 122344555556666555443 222 356667777777
Q ss_pred eeeccccccCC
Q 013456 279 RLRSINDFYVP 289 (442)
Q Consensus 279 ~l~~~~~~~~~ 289 (442)
++++|.....+
T Consensus 153 ~l~~n~~~~~~ 163 (168)
T 2ell_A 153 DGYDREDQEAP 163 (168)
T ss_dssp TTEETTSCBCC
T ss_pred cCCCCChhhcc
Confidence 77776655443
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=2e-14 Score=125.63 Aligned_cols=127 Identities=24% Similarity=0.270 Sum_probs=63.5
Q ss_pred ceeEEEecCCCCCCCC-hhhhhcccccceecccccccccCCcc-ccccCCCcEEeecCccccccchh-hhcccccceeee
Q 013456 129 RLLRVLDLEDVYKPVL-PETIGKLQLLRYVGLRRTFIDSIPKS-LGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYL 205 (442)
Q Consensus 129 ~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 205 (442)
++|++|++++|.+..+ |..+..+++|++|++++|.+..+|.. +..+++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 4455555555555444 33455555555555555555555432 35555555555555555554443 345555555555
Q ss_pred ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEee
Q 013456 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICN 258 (442)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 258 (442)
++|.+. .+|. .+..+++|+.|++.++......+..+..+++|+.|++.+|
T Consensus 120 s~N~l~-~lp~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 120 CCNKLT-ELPR--GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CSSCCC-SCCT--TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cCCccc-ccCc--ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 555544 2222 2444455555554444443333333444444444444444
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=3.7e-14 Score=123.03 Aligned_cols=150 Identities=19% Similarity=0.155 Sum_probs=104.7
Q ss_pred EEEecCCCCCCCChhhhhcccccceecccccccccCC--ccccccCCCcEEeecCccccccch-hhhcccccceeeeccc
Q 013456 132 RVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIP--KSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDI 208 (442)
Q Consensus 132 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~ 208 (442)
++++++++.+..+|..+. ..+++|++++|.+..++ ..++++++|++|++++|.++.++. .+.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 467777777777776553 34577778777777663 236777778888888777776554 5777777888888777
Q ss_pred cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456 209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF 286 (442)
Q Consensus 209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 286 (442)
.+....+. .++.+++|++|++.++......+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|...
T Consensus 92 ~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHK--MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGG--GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC-CBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHh--HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC-EECHHHhcCCCCCCEEEecCcCCc
Confidence 77644332 3677777777777777776666667777777888887777654 334666777777777777776654
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=2.4e-14 Score=124.29 Aligned_cols=150 Identities=17% Similarity=0.240 Sum_probs=106.5
Q ss_pred EEEecCCCCCCCChhhhhcccccceecccccccccCCc-cccccCCCcEEeecCcccccc-chhhhcccccceeeecccc
Q 013456 132 RVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIH 209 (442)
Q Consensus 132 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 209 (442)
+.++++++.+..+|..+. ++|++|++++|.+..+|. .+..+++|++|+|++|.++.+ |..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 467777777777776554 577888888877777754 567778888888888877755 6667778888888888877
Q ss_pred ccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456 210 LQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF 286 (442)
Q Consensus 210 ~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 286 (442)
+.. ++.. .+..+++|+.|++.++......+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|...
T Consensus 92 l~~-l~~~-~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITE-LPKS-LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCC-CCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCc-cCHh-HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCcC
Confidence 763 3322 4567778888887777777666677777788888888877654 333445667777888888776543
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=1.3e-14 Score=117.84 Aligned_cols=128 Identities=20% Similarity=0.165 Sum_probs=93.4
Q ss_pred hcCceeEEEecCCCCCC--CChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccc-cchhhhcccccce
Q 013456 126 RGYRLLRVLDLEDVYKP--VLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITS-LPKSIWKVKTLRH 202 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~ 202 (442)
...++|+.|++++|.+. .+|..+..+++|++|++++|.+..+ ..++.+++|++|++++|.++. +|..+..+++|++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 34688999999999887 7888889999999999999999888 678899999999999999996 7887888999999
Q ss_pred eeeccccccccccCCCCCCCCcccccccccccCCCCCch---hhhccccCcceeeE
Q 013456 203 LYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPL---NWLENLSDLKNLGL 255 (442)
Q Consensus 203 L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~---~~l~~l~~L~~L~l 255 (442)
|++++|.+.+. +.+..++.+++|+.|++.++......+ ..+..+++|+.|++
T Consensus 93 L~ls~N~i~~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDL-STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCCCSH-HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCcCCCh-HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 99999987642 111135555555555555544332222 23444444444443
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=3.2e-14 Score=133.38 Aligned_cols=123 Identities=20% Similarity=0.225 Sum_probs=86.4
Q ss_pred EEEecCCCCCCCChhhhhcccccceecccccccccCCcc-cc-ccCCCcEEeecCccccccch-hhhcccccceeeeccc
Q 013456 132 RVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS-LG-DLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDI 208 (442)
Q Consensus 132 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~-~~-~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~ 208 (442)
++++++++.+..+|..+. ..+++|+|++|.+..++.. +. ++++|++|+|++|.++.++. .+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 688999988888887664 4688999999999888654 55 89999999999999997764 5888999999999998
Q ss_pred cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEee
Q 013456 209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICN 258 (442)
Q Consensus 209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 258 (442)
.+....+. .+..+++|+.|++.++......+..+..+++|+.|++++|
T Consensus 99 ~l~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 99 HLHTLDEF--LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp CCCEECTT--TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cCCcCCHH--HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 87643222 3556666666665555444333334444444444444444
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=1.5e-14 Score=147.51 Aligned_cols=119 Identities=23% Similarity=0.246 Sum_probs=97.4
Q ss_pred hhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceee
Q 013456 125 IRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLY 204 (442)
Q Consensus 125 ~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 204 (442)
+..++.|++|+|++|.+..+|..+..+++|++|+|++|.+..+|..++++++|++|+|++|.++.+|..++.|++|++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 45688899999999988888888888999999999999998899889999999999999999999999999999999999
Q ss_pred eccccccccccCCCCCCCCcccccccccccCCCCCchhhhcc
Q 013456 205 LNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLEN 246 (442)
Q Consensus 205 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~ 246 (442)
+++|.+. .+|. .++.+++|+.|++.++...+..+..+..
T Consensus 300 L~~N~l~-~lp~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 300 FFDNMVT-TLPW--EFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CCSSCCC-CCCS--STTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCCCCCC-ccCh--hhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 9998775 4443 4777888888877777766555555443
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=3.6e-14 Score=133.02 Aligned_cols=173 Identities=17% Similarity=0.144 Sum_probs=136.6
Q ss_pred eeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhh-hh-cccccceecccccccccCC-cccccc
Q 013456 98 HSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPET-IG-KLQLLRYVGLRRTFIDSIP-KSLGDL 174 (442)
Q Consensus 98 r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-l~-~l~~L~~L~L~~~~i~~lp-~~~~~l 174 (442)
+++...++....+|... .+.+++|+|++|.+..++.. +. ++++|++|+|++|.+..++ ..+.++
T Consensus 21 ~~l~c~~~~l~~iP~~~-------------~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l 87 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-------------PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87 (361)
T ss_dssp TEEECCSSCCSSCCSSC-------------CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CEEEeCCCCcCccCccC-------------CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC
Confidence 56666666666666531 35589999999999888764 55 8999999999999999886 468999
Q ss_pred CCCcEEeecCccccccch-hhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhh---ccccCc
Q 013456 175 HSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWL---ENLSDL 250 (442)
Q Consensus 175 ~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l---~~l~~L 250 (442)
++|++|+|++|.++.++. .+..+++|++|++++|.+....+. .+..+++|+.|++.++.........+ ..+++|
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~--~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN--AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH--HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence 999999999999997765 578999999999999998755443 58999999999999988766544444 679999
Q ss_pred ceeeEEeeccccchhHHhhcCCcc--cccceeeccccc
Q 013456 251 KNLGLICNIASLGKITNLIQGLTS--LESLRLRSINDF 286 (442)
Q Consensus 251 ~~L~l~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~ 286 (442)
+.|++++|.+. ...+..+..++. ++.|++.+|...
T Consensus 166 ~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 166 MLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CEEECCCCCCC-ccCHHHhhhccHhhcceEEecCCCcc
Confidence 99999999765 333455666665 488999887654
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=5.1e-14 Score=130.27 Aligned_cols=99 Identities=13% Similarity=-0.025 Sum_probs=45.4
Q ss_pred CceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCccc-EEEecccCCcceEE-eCCCccccccE
Q 013456 323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLR-VLKLWVLKELKEWT-IEEGAMTALEK 400 (442)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~-~~~~~~~~L~~ 400 (442)
++|+.++++.|.++......|..|++|+.+++.+| + ..+....+.++++|+ .+.+.+ .++.+. ..+.++++|+.
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i-~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L-KTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c-ceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCE
Confidence 45555555555444333344555555555555444 1 223333344555555 555543 333332 23334455555
Q ss_pred EEeccCCCCCC-CccCCCCCCCcEEE
Q 013456 401 LEIRNCPKLKM-PTELTKLSNLKELT 425 (442)
Q Consensus 401 L~l~~c~~l~~-p~~l~~l~~L~~L~ 425 (442)
+++.++....+ +..+.++++|+.|+
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCccchhhhcCCcchhhhc
Confidence 55544444444 33444555555443
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=1.3e-13 Score=120.40 Aligned_cols=131 Identities=20% Similarity=0.202 Sum_probs=82.2
Q ss_pred ccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChh-hhhcccccceecccccccccCCcc-cc
Q 013456 95 EYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIPKS-LG 172 (442)
Q Consensus 95 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp~~-~~ 172 (442)
++++.|.+.++....++...| ..+++|++|++++|.+..+|. .+..+++|++|+|++|.+..+|.. +.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~----------~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 109 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVF----------DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTT----------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCEEEcCCCccCccCHHHh----------hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhC
Confidence 666666666665554443322 346667777777766666654 356667777777777766666543 46
Q ss_pred ccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCC
Q 013456 173 DLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKK 237 (442)
Q Consensus 173 ~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~ 237 (442)
.+++|++|++++|.++.+|..+..+++|++|++++|.+....+ ..+..+++|+.|++.++...
T Consensus 110 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECTTSCBC
T ss_pred cchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH--HHHhCCCCCCEEEeeCCCcc
Confidence 6677777777777777777666777777777777776653222 14566667777666665543
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=8e-14 Score=116.52 Aligned_cols=133 Identities=17% Similarity=0.136 Sum_probs=97.2
Q ss_pred hhhcCceeEEEecCCCCCCCChhhhhccc-ccceecccccccccCCccccccCCCcEEeecCccccccchhh-hcccccc
Q 013456 124 AIRGYRLLRVLDLEDVYKPVLPETIGKLQ-LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSI-WKVKTLR 201 (442)
Q Consensus 124 ~~~~~~~L~~L~l~~~~~~~l~~~l~~l~-~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~ 201 (442)
.+..+.+|++|++++|.+..++. +..+. +|++|++++|.+..+ ..++.+++|++|++++|.++.+|..+ ..+++|+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 34567889999999998888865 44544 999999999999888 57889999999999999999888665 8899999
Q ss_pred eeeeccccccccccCCCCCCCCcccccccccccCCCCCchh----hhccccCcceeeEEeecc
Q 013456 202 HLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLN----WLENLSDLKNLGLICNIA 260 (442)
Q Consensus 202 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~ 260 (442)
+|++++|.+.. ++.-..+..+++|+.|++.++.... .+. .+..+++|+.|+++.|..
T Consensus 92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999998753 3321135566666666666655432 222 256666666666666543
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=9.8e-14 Score=115.05 Aligned_cols=133 Identities=19% Similarity=0.117 Sum_probs=87.6
Q ss_pred cccceecccccccc--cCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccc
Q 013456 152 QLLRYVGLRRTFID--SIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTL 229 (442)
Q Consensus 152 ~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 229 (442)
++|++|++++|.+. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~------------------ 84 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIF------------------ 84 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCC------------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCc------------------
Confidence 45666666666655 5555555666666666666665554 44555555666666555443
Q ss_pred cccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEec
Q 013456 230 WGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLL 309 (442)
Q Consensus 230 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 309 (442)
...+..+..+++|+.|++++|.+.....+..+..+++|+.|++++|.....+.. ....+..+++|+.|++.
T Consensus 85 --------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 85 --------GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY-RESVFKLLPQLTYLDGY 155 (168)
T ss_dssp --------SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTH-HHHHHTTCSSCCEETTE
T ss_pred --------hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHH-HHHHHHhCccCcEecCC
Confidence 334455667889999999988664222336788999999999999987765540 01236678999999998
Q ss_pred ccc
Q 013456 310 GRL 312 (442)
Q Consensus 310 ~~~ 312 (442)
++.
T Consensus 156 ~n~ 158 (168)
T 2ell_A 156 DRE 158 (168)
T ss_dssp ETT
T ss_pred CCC
Confidence 874
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.44 E-value=1.5e-13 Score=116.43 Aligned_cols=126 Identities=20% Similarity=0.207 Sum_probs=84.3
Q ss_pred EEEecCCCCCCCChhhhhcccccceecccccccccCCcc--ccccCCCcEEeecCcccccc-chhhhcccccceeeeccc
Q 013456 132 RVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS--LGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDI 208 (442)
Q Consensus 132 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~--~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~ 208 (442)
++++++++.++.+|..+.. +|++|++++|.+..++.. ++.+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5677777777777765543 777777777777776543 67777777777777777755 566777777777777777
Q ss_pred cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccc
Q 013456 209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIAS 261 (442)
Q Consensus 209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 261 (442)
.+.+..+. .++.+++|+.|++.++......+..+..+++|+.|++++|...
T Consensus 89 ~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNK--MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSS--SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHH--HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 76644332 3566666666666666655555555666666666666666443
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=5.5e-13 Score=113.01 Aligned_cols=125 Identities=22% Similarity=0.227 Sum_probs=74.3
Q ss_pred EEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccch-hhhcccccceeeeccccc
Q 013456 132 RVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHL 210 (442)
Q Consensus 132 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 210 (442)
++++++++.+..+|..+. ++|++|++++|.+..+|..+.++++|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 456666666666665442 45666666666666666666666666666666666665543 355666666666666665
Q ss_pred cccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeecc
Q 013456 211 QMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIA 260 (442)
Q Consensus 211 ~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 260 (442)
....+. .+..+++|+.|++.++......+..+..+++|+.|++++|..
T Consensus 91 ~~i~~~--~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPR--TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTT--TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHH--HhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 533222 355566666666655555444444456666777777766644
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=2.6e-13 Score=138.28 Aligned_cols=118 Identities=23% Similarity=0.219 Sum_probs=100.5
Q ss_pred CCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccC
Q 013456 88 PSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSI 167 (442)
Q Consensus 88 ~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l 167 (442)
...+..++.|+.|.+.++....++.. +.++++|++|+|++|.+..+|..++++++|++|+|++|.+..+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~-----------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 285 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISAN-----------IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL 285 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGG-----------GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC
T ss_pred hhhhccCCCCcEEECCCCCCCCCChh-----------hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc
Confidence 45567788999999998877666543 1358999999999999999999999999999999999999999
Q ss_pred CccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccC
Q 013456 168 PKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQK 216 (442)
Q Consensus 168 p~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 216 (442)
|..++++++|++|+|++|.++.+|..++.+++|++|++++|.+.+..|.
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred ChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 9999999999999999999999999999999999999999998765543
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=2.1e-13 Score=110.60 Aligned_cols=128 Identities=20% Similarity=0.168 Sum_probs=84.1
Q ss_pred cccccceecccccccc--cCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccc
Q 013456 150 KLQLLRYVGLRRTFID--SIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLR 227 (442)
Q Consensus 150 ~l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~ 227 (442)
..++|++|++++|.+. .+|..++.+++|++|++++|.++.+ ..+..+++|++|++++|.+.+..|. .++.+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEV--LAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHH--HHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHH--HhhhCCCCC
Confidence 3578888899888887 7788788888899999988888877 6677888888888888877653332 244566666
Q ss_pred cccccccCCCCC-chhhhccccCcceeeEEeeccccchhH---HhhcCCcccccceee
Q 013456 228 TLWGLSIGKKSP-PLNWLENLSDLKNLGLICNIASLGKIT---NLIQGLTSLESLRLR 281 (442)
Q Consensus 228 ~L~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~ 281 (442)
.|++.++..... .+..+..+++|+.|++++|.+. ...+ ..+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 666666554432 2245566666666666665443 1111 244555555555543
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=4.8e-14 Score=120.31 Aligned_cols=116 Identities=21% Similarity=0.211 Sum_probs=87.5
Q ss_pred CCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCC
Q 013456 140 YKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFV 219 (442)
Q Consensus 140 ~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 219 (442)
.++.+|..+..+++|++|++++|.+..+| .++++++|++|++++|.++.+|..+..+++|++|++++|.+.+ ++ .
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~---~ 110 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS---G 110 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH---H
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC---c
Confidence 45556668889999999999999888888 7888999999999999998888888888999999999987764 23 2
Q ss_pred CCCCcccccccccccCCCCCc-hhhhccccCcceeeEEeecc
Q 013456 220 KPSLTNLRTLWGLSIGKKSPP-LNWLENLSDLKNLGLICNIA 260 (442)
Q Consensus 220 ~~~l~~L~~L~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~ 260 (442)
++.+++|+.|++.++...... ...+..+++|+.|++++|..
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 556666777766666554322 13566677777777776644
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=8.7e-13 Score=111.76 Aligned_cols=128 Identities=19% Similarity=0.093 Sum_probs=106.8
Q ss_pred cceecccccccccCCccccccCCCcEEeecCccccccchh--hhcccccceeeeccccccccccCCCCCCCCcccccccc
Q 013456 154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKS--IWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWG 231 (442)
Q Consensus 154 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~ 231 (442)
-++++++++.++.+|..+.. +|++|++++|.++.++.. +..+++|++|++++|.+.+..+. .++.+++|+.|++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN--AFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT--TTTTCTTCCEEEC
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh--HcCCcccCCEEEC
Confidence 37899999999999987754 899999999999988764 88999999999999998865554 5888999999999
Q ss_pred cccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456 232 LSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF 286 (442)
Q Consensus 232 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 286 (442)
.++......+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|...
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCC-eeCHHHhhcCCCCCEEEeCCCCcc
Confidence 888877666666888899999999988765 555677778888888888887654
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=1.6e-12 Score=128.55 Aligned_cols=151 Identities=21% Similarity=0.220 Sum_probs=111.2
Q ss_pred hhcCceeEEEe-cCCCCCCCChh------hhhc--ccccceecccccccccCCccccccCCCcEEeecCccccccchhhh
Q 013456 125 IRGYRLLRVLD-LEDVYKPVLPE------TIGK--LQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIW 195 (442)
Q Consensus 125 ~~~~~~L~~L~-l~~~~~~~l~~------~l~~--l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~ 195 (442)
+..+++|+.|+ ++.+.+..++. .+.. ...|++|++++|.+..+|. ++.+++|++|++++|.++.+|..++
T Consensus 405 l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~ 483 (567)
T 1dce_A 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALA 483 (567)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGG
T ss_pred HHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhh
Confidence 45677777777 55443333321 1222 1258889999998888886 8889999999999999999999999
Q ss_pred cccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCc-hhhhccccCcceeeEEeeccccc--hhHHhhcCC
Q 013456 196 KVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPP-LNWLENLSDLKNLGLICNIASLG--KITNLIQGL 272 (442)
Q Consensus 196 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~l 272 (442)
.+++|+.|++++|.+.+ +| .++.+++|+.|++.++...+.. +..++.+++|+.|++++|.+... .....+..+
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp---~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~l 559 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD---GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG---GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHC
T ss_pred cCCCCCEEECCCCCCCC-Cc---ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHC
Confidence 99999999999998875 44 4888999999998888877665 88899999999999998865411 122233446
Q ss_pred ccccccee
Q 013456 273 TSLESLRL 280 (442)
Q Consensus 273 ~~L~~L~l 280 (442)
++|+.|++
T Consensus 560 p~L~~L~l 567 (567)
T 1dce_A 560 PSVSSILT 567 (567)
T ss_dssp TTCSEEEC
T ss_pred cccCccCC
Confidence 77777753
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.34 E-value=2.6e-12 Score=108.87 Aligned_cols=128 Identities=19% Similarity=0.168 Sum_probs=104.4
Q ss_pred cceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccc
Q 013456 154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLS 233 (442)
Q Consensus 154 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~ 233 (442)
-++++++++.+..+|..+. ++|++|++++|.++.+|..+..+++|++|++++|.+....+. .+..+++|+.|++.+
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~--~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQ--SFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHh--HccCCCCCCEEECCC
Confidence 3688999999999998764 689999999999999999999999999999999998754433 588889999999888
Q ss_pred cCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456 234 IGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF 286 (442)
Q Consensus 234 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 286 (442)
+......+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|...
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence 8877777777888888888888888654 333345677788888888877543
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=2.6e-14 Score=121.97 Aligned_cols=108 Identities=21% Similarity=0.205 Sum_probs=81.7
Q ss_pred hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456 126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL 205 (442)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 205 (442)
..+++|++|++++|.+..+| .+..+++|++|++++|.+..+|..+..+++|++|++++|.++.+| .+..+++|++|++
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEE
T ss_pred hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEEC
Confidence 45788888888888777777 777888888888888888888877777788888888888888776 5778888888888
Q ss_pred ccccccccccCCCCCCCCcccccccccccCC
Q 013456 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGK 236 (442)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~ 236 (442)
++|.+....+.+ .+..+++|+.|++.++..
T Consensus 123 ~~N~i~~~~~~~-~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 123 SNNKITNWGEID-KLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SEEECCCHHHHH-HHTTTTTCSEEEECSCHH
T ss_pred CCCcCCchhHHH-HHhcCCCCCEEEecCCcc
Confidence 888776422211 366778888888776654
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=1.7e-12 Score=108.41 Aligned_cols=133 Identities=14% Similarity=0.072 Sum_probs=100.6
Q ss_pred ccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCcc
Q 013456 91 KKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS 170 (442)
Q Consensus 91 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~ 170 (442)
+..+.+++.|.+.++....++. +.. ..++|++|++++|.+..+ ..+..+++|++|++++|.+..+|..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~--~~~---------~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN--LGA---------TLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC--GGG---------GTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSC
T ss_pred cCCcCCceEEEeeCCCCchhHH--hhh---------cCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcc
Confidence 4456778888888776554432 111 134899999999888777 6788889999999999999888765
Q ss_pred c-cccCCCcEEeecCccccccch--hhhcccccceeeeccccccccccCC--CCCCCCcccccccccccCC
Q 013456 171 L-GDLHSLETLDMKHTNITSLPK--SIWKVKTLRHLYLNDIHLQMSVQKP--FVKPSLTNLRTLWGLSIGK 236 (442)
Q Consensus 171 ~-~~l~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~--~~~~~l~~L~~L~~~~~~~ 236 (442)
+ +.+++|++|++++|.+..+|. .+..+++|++|++++|.+... +.. ..++.+++|+.|++..+..
T Consensus 83 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCH
Confidence 5 889999999999999988887 788899999999999987632 210 0267788899888776643
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.29 E-value=5.8e-12 Score=116.37 Aligned_cols=281 Identities=13% Similarity=0.034 Sum_probs=135.6
Q ss_pred ccccceeEEEEeecCCCCCCchhhhHHHHHHhhhc-CceeEEEecCCCCCCCChhhhhcccccceecccccccccCCc-c
Q 013456 93 QFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRG-YRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPK-S 170 (442)
Q Consensus 93 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~-~ 170 (442)
...+++.|.+.+.... ..+. .+.. +++|++|||++|.+......-+.++.++++.+..+ .+|+ .
T Consensus 23 ~~~~l~~L~l~g~i~~----~~~~-------~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~a 88 (329)
T 3sb4_A 23 EANSITHLTLTGKLNA----EDFR-------HLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYA 88 (329)
T ss_dssp HHHHCSEEEEEEEECH----HHHH-------HHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTT
T ss_pred hhCceeEEEEeccccH----HHHH-------HHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHH
Confidence 5678889988876321 1122 2233 78899999998877622111112222344444433 2322 3
Q ss_pred ccc--------cCCCcEEeecCccccccch-hhhcccccceeeeccccccccccCCCCCCCCccccccccccc----CCC
Q 013456 171 LGD--------LHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSI----GKK 237 (442)
Q Consensus 171 ~~~--------l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~----~~~ 237 (442)
|.+ +++|+.|+|.. .++.++. .+..|++|+.+++..|.+.. ++.. .+..+.++..+..... ...
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-i~~~-aF~~~~~l~~l~~~~~~~~~~~~ 165 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-LLPE-ALADSVTAIFIPLGSSDAYRFKN 165 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-ECTT-SSCTTTCEEEECTTCTHHHHTST
T ss_pred hcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-cchh-hhcCCCceEEecCcchhhhhccc
Confidence 445 77777777777 6666654 35667777777777766542 2222 3455555544432220 000
Q ss_pred CCchhhhccccCcc-eeeEEeeccccchhHHhh----cCCcccccceeeccccccCCcccccccc-CCcCCCceEEeccc
Q 013456 238 SPPLNWLENLSDLK-NLGLICNIASLGKITNLI----QGLTSLESLRLRSINDFYVPSDLAIGSL-NNHKELKELYLLGR 311 (442)
Q Consensus 238 ~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~L~~l~l~~~ 311 (442)
......+..+.+|+ .+.+... ..++..+ ....+++.+.+.++-... .+..+ ..+++|+.+++.++
T Consensus 166 ~i~~~~f~~~~~L~~~i~~~~~----~~l~~~~~~~~~~~~~~~~l~~~~~l~~~-----~~~~l~~~~~~L~~l~L~~n 236 (329)
T 3sb4_A 166 RWEHFAFIEGEPLETTIQVGAM----GKLEDEIMKAGLQPRDINFLTIEGKLDNA-----DFKLIRDYMPNLVSLDISKT 236 (329)
T ss_dssp TTTTSCEEESCCCEEEEEECTT----CCHHHHHHHTTCCGGGCSEEEEEECCCHH-----HHHHHHHHCTTCCEEECTTB
T ss_pred cccccccccccccceeEEecCC----CcHHHHHhhcccCccccceEEEeeeecHH-----HHHHHHHhcCCCeEEECCCC
Confidence 11111123333333 2222111 1111111 112233333333211000 00000 01344555555443
Q ss_pred cCC--CcccccCCCceeEEEEeccCCCCCCcccccCCCCCc-EEEeCcccccCcccccCCCCCCcccEEEecccCCcceE
Q 013456 312 LPG--PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELK-ALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEW 388 (442)
Q Consensus 312 ~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 388 (442)
... +.....-+.+|+.+++..+ ++......|..|++|+ .+.+.+ .+. .+....+.++++|+.+++.++ .++.+
T Consensus 237 ~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n-~i~~I 312 (329)
T 3sb4_A 237 NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGD-KITTL 312 (329)
T ss_dssp CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSS-CCCEE
T ss_pred CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCC-ccCcc
Confidence 110 1111122256777777665 4444455677788888 888866 332 334445777888888888663 45555
Q ss_pred Ee-CCCccccccEEEe
Q 013456 389 TI-EEGAMTALEKLEI 403 (442)
Q Consensus 389 ~~-~~~~~~~L~~L~l 403 (442)
.. .+.++++|+.++.
T Consensus 313 ~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 313 GDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTTTCTTCCCCEEEC
T ss_pred chhhhcCCcchhhhcc
Confidence 43 4556777777753
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=1.3e-11 Score=103.07 Aligned_cols=127 Identities=24% Similarity=0.250 Sum_probs=71.0
Q ss_pred eEEEecCCCCCCCChhhhhcccccceecccccccccCCcc-ccccCCCcEEeecCccccccchh-hhcccccceeeeccc
Q 013456 131 LRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS-LGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYLNDI 208 (442)
Q Consensus 131 L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~ 208 (442)
.+.++++++.+..+|..+. ++|++|++++|.+..+|.. ++++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3455666666655554332 4666666666666655433 45666666666666666655543 356666666666666
Q ss_pred cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccc
Q 013456 209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIAS 261 (442)
Q Consensus 209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 261 (442)
.+....+. .++.+++|+.|++.++......+..+..+++|+.|++++|...
T Consensus 87 ~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNG--VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTT--TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHH--HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 65532221 3455566666665555544333333455666666666666443
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=6.7e-11 Score=98.71 Aligned_cols=112 Identities=19% Similarity=0.191 Sum_probs=88.6
Q ss_pred CCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEe-CCCccccccE
Q 013456 322 PPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTI-EEGAMTALEK 400 (442)
Q Consensus 322 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~ 400 (442)
+++|+.|++++|.+++..+..++.+++|+.|++++|.+.+. +...+..+++|++|++++|. ++.++. ....+++|+.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCE
Confidence 47889999999988866666788899999999999988643 33336789999999999864 444443 3467899999
Q ss_pred EEeccCCCCCCCcc-CCCCCCCcEEEeccccccccC
Q 013456 401 LEIRNCPKLKMPTE-LTKLSNLKELTLVKKVLKMKP 435 (442)
Q Consensus 401 L~l~~c~~l~~p~~-l~~l~~L~~L~l~~n~l~~~p 435 (442)
|++++|.+..+|.. +..+++|++|++++|++...+
T Consensus 105 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 105 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred EECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 99999988877544 578999999999999886644
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=7.6e-11 Score=97.89 Aligned_cols=99 Identities=20% Similarity=0.300 Sum_probs=57.9
Q ss_pred EEEecCCCCCCCChhhhhcccccceecccccccccC-CccccccCCCcEEeecCccccccchh-hhcccccceeeecccc
Q 013456 132 RVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYLNDIH 209 (442)
Q Consensus 132 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 209 (442)
+.++++++.+..+|..+. ++|++|++++|.+..+ |..++++++|++|+|++|.++.+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666666666666543 5666666666666665 44566666666666666666666654 3566666666666666
Q ss_pred ccccccCCCCCCCCccccccccccc
Q 013456 210 LQMSVQKPFVKPSLTNLRTLWGLSI 234 (442)
Q Consensus 210 ~~~~~~~~~~~~~l~~L~~L~~~~~ 234 (442)
+... +.. .+..+++|+.|++.++
T Consensus 93 l~~l-~~~-~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 93 LKSI-PRG-AFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCC-CTT-TTTTCTTCSEEECCSS
T ss_pred ccee-CHH-HhccccCCCEEEeCCC
Confidence 5522 211 2444444444444444
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.15 E-value=8.1e-11 Score=97.41 Aligned_cols=102 Identities=24% Similarity=0.291 Sum_probs=72.0
Q ss_pred eeEEEecCCCCCCCChhhhhcccccceecccccccccC-CccccccCCCcEEeecCccccccchh-hhcccccceeeecc
Q 013456 130 LLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYLND 207 (442)
Q Consensus 130 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~ 207 (442)
..++++++++.+..+|..+. ++|++|++++|.+..+ |..++++++|++|+|++|+++.+|.. +..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35678888888888877653 6788888888888777 55678888888888888888877765 46788888888888
Q ss_pred ccccccccCCCCCCCCcccccccccccC
Q 013456 208 IHLQMSVQKPFVKPSLTNLRTLWGLSIG 235 (442)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~ 235 (442)
|.+....+. .+..+++|+.|++.++.
T Consensus 88 N~l~~~~~~--~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRG--AFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTT--TTTTCTTCCEEECCSSC
T ss_pred CccCEeCHH--HhcCCCCCCEEEeCCCC
Confidence 876633221 35555555555555443
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=1.3e-10 Score=96.42 Aligned_cols=101 Identities=23% Similarity=0.288 Sum_probs=85.5
Q ss_pred eeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-hhhhhcccccceecccccccccCCcc-ccccC
Q 013456 98 HSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-PETIGKLQLLRYVGLRRTFIDSIPKS-LGDLH 175 (442)
Q Consensus 98 r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~ 175 (442)
+.+.+.++....+|... .++|++|++++|.+..+ |..+.++++|++|+|++|.+..+|.. +++++
T Consensus 15 ~~l~~~~n~l~~iP~~~-------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 81 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT 81 (174)
T ss_dssp SEEECCSSCCSSCCSCC-------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cEEEeCCCCCCccCCCc-------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc
Confidence 45666666666666531 37799999999999888 55789999999999999999999876 58999
Q ss_pred CCcEEeecCccccccchh-hhcccccceeeecccccc
Q 013456 176 SLETLDMKHTNITSLPKS-IWKVKTLRHLYLNDIHLQ 211 (442)
Q Consensus 176 ~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~ 211 (442)
+|++|+|++|.++.+|.. +..+++|++|++++|.+.
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 999999999999988876 889999999999999765
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.04 E-value=4.7e-10 Score=92.77 Aligned_cols=105 Identities=24% Similarity=0.210 Sum_probs=87.5
Q ss_pred ccceecccccccccCCccccccCCCcEEeecCcccccc-chhhhcccccceeeeccccccccccCCCCCCCCcccccccc
Q 013456 153 LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWG 231 (442)
Q Consensus 153 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~ 231 (442)
..+.++++++.+..+|..+. ++|++|++++|.++.+ |..+.++++|++|++++|.+... +.. .+..+++|+.|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~-~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAG-VFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTT-TTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-Chh-hccCCCCCCEEEC
Confidence 46889999999999998774 8999999999999977 56688999999999999998743 322 4688999999999
Q ss_pred cccCCCCCchhhhccccCcceeeEEeeccc
Q 013456 232 LSIGKKSPPLNWLENLSDLKNLGLICNIAS 261 (442)
Q Consensus 232 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 261 (442)
.++......+..+..+++|+.|++++|...
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 888877666666888889999999888553
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.04 E-value=5.1e-09 Score=98.90 Aligned_cols=241 Identities=11% Similarity=0.055 Sum_probs=127.3
Q ss_pred eeEEEecCCCCCCCChh-hhhcccccceecccccccccCC-ccccccCCCcEEeecCccccccchhhhcccccceeeecc
Q 013456 130 LLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLND 207 (442)
Q Consensus 130 ~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 207 (442)
+|+.+.+.++ +..++. +|.++ +|+.+.+.. .+..++ ..|.++++|+.+++..|.++.++.....+.+|+.+.+..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence 5788887755 444543 56564 688888875 566664 457788888888888888888877766678888888875
Q ss_pred ccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccccc
Q 013456 208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY 287 (442)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 287 (442)
+ +. .++.. .+.++++|+.+.+... ........|.+ .+|+.+.+..+-. .--..++.++++|+.+.+.++....
T Consensus 213 ~-l~-~I~~~-aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~i~--~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 213 T-LK-EIGSQ-AFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNGVT--NIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp T-CC-EECTT-TTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETTCC--EECTTTTTTCTTCCEEEEESSCCCC
T ss_pred c-hh-eehhh-HhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCCcc--EEChhHhhCCCCCCEEEeCCccccC
Confidence 4 22 23322 5667777777765432 11111223333 4566666643211 1123445556666666665543321
Q ss_pred CC-ccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccccc
Q 013456 288 VP-SDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTC 366 (442)
Q Consensus 288 ~~-~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 366 (442)
.+ ....-.++..+ ++|+.+.+.. .++......|..|.+|+.+.+..+ +. .+...
T Consensus 286 ~~~~~I~~~aF~~c----------------------~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~ 340 (401)
T 4fdw_A 286 DPEAMIHPYCLEGC----------------------PKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFS 340 (401)
T ss_dssp CTTCEECTTTTTTC----------------------TTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECTT
T ss_pred CcccEECHHHhhCC----------------------ccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHH
Confidence 00 01111223334 4455555542 233233345566666666666443 21 22233
Q ss_pred CCCCCCcccEEEecccCCcceEEeCCCccc-cccEEEeccC
Q 013456 367 GNGGFPQLRVLKLWVLKELKEWTIEEGAMT-ALEKLEIRNC 406 (442)
Q Consensus 367 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l~~c 406 (442)
.+.++ +|+.+.+.++..-......+.+++ .++.|.+-..
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 35555 666666666432211112222332 4556665543
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.96 E-value=1.2e-08 Score=96.33 Aligned_cols=264 Identities=9% Similarity=0.057 Sum_probs=152.3
Q ss_pred ccccceecccccccccCCc-cccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccc
Q 013456 151 LQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTL 229 (442)
Q Consensus 151 l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 229 (442)
+..++.+.+.. .++.++. .|.++ +|+.+.+..+ ++.++.....-.+|+.+.+.. .+. .++.. .+..+++|+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~-~I~~~-aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLE-QLKED-IFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCC-EECSS-TTTTCTTCCEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-Ccc-EehHH-HhhCcccCCee
Confidence 35566666653 3556643 45554 7999998765 766665433225799998875 232 23322 57888888888
Q ss_pred cccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEec
Q 013456 230 WGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLL 309 (442)
Q Consensus 230 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 309 (442)
++..+.........+. ..+|+.+.+..+-. .--..++.++++|+.+.+..+ ...... .++.. .+|+.+.+.
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~l~--~I~~~aF~~~~~L~~l~l~~~-l~~I~~----~aF~~-~~L~~i~lp 256 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVTLK--EIGSQAFLKTSQLKTIEIPEN-VSTIGQ----EAFRE-SGITTVKLP 256 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTTCC--EECTTTTTTCTTCCCEECCTT-CCEECT----TTTTT-CCCSEEEEE
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCchh--eehhhHhhCCCCCCEEecCCC-ccCccc----ccccc-CCccEEEeC
Confidence 8765544333333344 46788877764311 222345677788888887653 222222 23444 567777775
Q ss_pred cccCC-CcccccCCCceeEEEEeccCCC-----CCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccC
Q 013456 310 GRLPG-PLKLHELPPNLRIFTLSLSYLS-----EDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLK 383 (442)
Q Consensus 310 ~~~~~-~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 383 (442)
..... ......-+++|+.+.+..+... ......|..|++|+.+.+.++ +. .+....+.++++|+.+.+..
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~-~I~~~aF~~c~~L~~l~lp~-- 332 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IR-ILGQGLLGGNRKVTQLTIPA-- 332 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCCSCCEEEECT--
T ss_pred CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eE-EEhhhhhcCCCCccEEEECc--
Confidence 44321 1111222367777777766543 123445677777777777632 22 33334466777777777754
Q ss_pred CcceEE-eCCCccccccEEEeccCCCCCC-CccCCCCC-CCcEEEecccccccc
Q 013456 384 ELKEWT-IEEGAMTALEKLEIRNCPKLKM-PTELTKLS-NLKELTLVKKVLKMK 434 (442)
Q Consensus 384 ~l~~~~-~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~-~L~~L~l~~n~l~~~ 434 (442)
.++.+. ..+.++ +|+.+.+.++....+ +..+..++ +++.|.+..+.+...
T Consensus 333 ~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~y 385 (401)
T 4fdw_A 333 NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKY 385 (401)
T ss_dssp TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHHH
T ss_pred cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHHHh
Confidence 244443 233455 777777777766555 44455563 577777777665443
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.82 E-value=1e-07 Score=90.18 Aligned_cols=309 Identities=12% Similarity=0.025 Sum_probs=164.7
Q ss_pred CCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCCh-hhhhcccccceeccccccc
Q 013456 86 ITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLP-ETIGKLQLLRYVGLRRTFI 164 (442)
Q Consensus 86 ~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~i 164 (442)
+...+|.++.+|+.+.+.+.. ..+... +|.+|.+|+.+++.++ +..++ ..+.++..|+.+.+..+ +
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~i-~~I~~~----------aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l 128 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPSTV-REIGEF----------AFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-L 128 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTTC-CEECTT----------TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-C
T ss_pred hHHHHhhCCCCceEEEeCCCc-cCcchh----------HhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-e
Confidence 344566666666666554321 112221 2344666666666543 33333 24556666666555432 2
Q ss_pred ccCC-ccccccCCCcEEeecCcccccc-chhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchh
Q 013456 165 DSIP-KSLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLN 242 (442)
Q Consensus 165 ~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~ 242 (442)
..+. ..+.++..++..... .+..+ ...+.++.+|+.+.+..+.. .++.. .+..+.+|+.+.+... .......
T Consensus 129 ~~i~~~aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~-~F~~c~~L~~i~l~~~-~~~I~~~ 202 (394)
T 4fs7_A 129 KSIGVEAFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSME--TLHNG-LFSGCGKLKSIKLPRN-LKIIRDY 202 (394)
T ss_dssp CEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTCC--EECTT-TTTTCTTCCBCCCCTT-CCEECTT
T ss_pred eeecceeeecccccccccCc--cccccchhhhcccCCCcEEecCCccc--eeccc-cccCCCCceEEEcCCC-ceEeCch
Confidence 3332 223333322222221 12212 23456777788877765421 22222 4666777777665322 1111223
Q ss_pred hhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCC-CcccccC
Q 013456 243 WLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPG-PLKLHEL 321 (442)
Q Consensus 243 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~ 321 (442)
.+..+..|+.+.+..+... +........+|+.+.+... ... .....+..+..++.+.+..+... .......
T Consensus 203 ~F~~~~~L~~i~~~~~~~~---i~~~~~~~~~l~~i~ip~~-~~~----i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~ 274 (394)
T 4fs7_A 203 CFAECILLENMEFPNSLYY---LGDFALSKTGVKNIIIPDS-FTE----LGKSVFYGCTDLESISIQNNKLRIGGSLFYN 274 (394)
T ss_dssp TTTTCTTCCBCCCCTTCCE---ECTTTTTTCCCCEEEECTT-CCE----ECSSTTTTCSSCCEEEECCTTCEECSCTTTT
T ss_pred hhccccccceeecCCCceE---eehhhcccCCCceEEECCC-cee----cccccccccccceeEEcCCCcceeecccccc
Confidence 4556666666665543222 1122223456666655431 111 11234556777777777654321 1111122
Q ss_pred CCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEE-eCCCccccccE
Q 013456 322 PPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWT-IEEGAMTALEK 400 (442)
Q Consensus 322 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~ 400 (442)
+..++.+......+. ...+..+.+|+.+.+..+ + ..+....+..+++|+.+.+.+ .++.+. ..+.++++|+.
T Consensus 275 ~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i-~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~ 347 (394)
T 4fs7_A 275 CSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-V-KFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSN 347 (394)
T ss_dssp CTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-C-CEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCE
T ss_pred ccccceeccCceeec---cccccccccccccccccc-c-ceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCE
Confidence 356666666544322 235677889999998654 2 233444577889999999864 355654 34567889999
Q ss_pred EEeccCCCCCC-CccCCCCCCCcEEEeccc
Q 013456 401 LEIRNCPKLKM-PTELTKLSNLKELTLVKK 429 (442)
Q Consensus 401 L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n 429 (442)
+.+..+ ...+ ...+.+|.+|+++.+..+
T Consensus 348 i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 348 INFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 999765 3444 667889999999999765
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.82 E-value=7.8e-10 Score=103.45 Aligned_cols=134 Identities=18% Similarity=0.060 Sum_probs=59.0
Q ss_pred cccceecccccccccC--CccccccCCCcEEeecCcccccc-chhh-----hcccccceeeecccccccccc--CCCCCC
Q 013456 152 QLLRYVGLRRTFIDSI--PKSLGDLHSLETLDMKHTNITSL-PKSI-----WKVKTLRHLYLNDIHLQMSVQ--KPFVKP 221 (442)
Q Consensus 152 ~~L~~L~L~~~~i~~l--p~~~~~l~~L~~L~L~~~~l~~l-p~~i-----~~l~~L~~L~l~~~~~~~~~~--~~~~~~ 221 (442)
++|++|+|++|.++.. ..-...+++|++|+|++|.++.. ...+ ...++|++|++++|.+..... ....+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4555555555554321 11112344555555555555421 1111 123455555555555432100 000122
Q ss_pred CCcccccccccccCCCC----CchhhhccccCcceeeEEeeccccc---hhHHhhcCCcccccceeecccc
Q 013456 222 SLTNLRTLWGLSIGKKS----PPLNWLENLSDLKNLGLICNIASLG---KITNLIQGLTSLESLRLRSIND 285 (442)
Q Consensus 222 ~l~~L~~L~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~ 285 (442)
..++|++|++.++.... .+...+...++|+.|++++|.++.. .++..+...++|+.|++++|.+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 33444444444443321 1233445555666666666654421 2334444456666666666654
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=1.3e-08 Score=94.65 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=38.4
Q ss_pred ecCCC-CCCCChhhhhcccccceecccc-cccccCC-ccccccCCCcEEeecCccccccch-hhhcccccceeeeccccc
Q 013456 135 DLEDV-YKPVLPETIGKLQLLRYVGLRR-TFIDSIP-KSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHL 210 (442)
Q Consensus 135 ~l~~~-~~~~l~~~l~~l~~L~~L~L~~-~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 210 (442)
+++++ .+..+|. +..+++|++|+|++ |.+..+| ..|+++++|++|+|++|.++.+|. .+.++++|++|++++|.+
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44444 4555555 55555555555553 5555444 234555555555555555554332 344555555555555554
Q ss_pred c
Q 013456 211 Q 211 (442)
Q Consensus 211 ~ 211 (442)
.
T Consensus 93 ~ 93 (347)
T 2ifg_A 93 E 93 (347)
T ss_dssp S
T ss_pred c
Confidence 4
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.78 E-value=2.6e-07 Score=87.31 Aligned_cols=95 Identities=14% Similarity=0.016 Sum_probs=40.2
Q ss_pred CceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEE-eCCCccccccEE
Q 013456 323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWT-IEEGAMTALEKL 401 (442)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L 401 (442)
.+|+.+.+..+ ++......|..+.+|+.+.+..+ + ..+....+.++.+|+.+.+..+ ++.+. ..+.++++|+.+
T Consensus 297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v-~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V-EEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKV 371 (394)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEE
T ss_pred ccccccccccc-cceechhhhcCCCCCCEEEeCCc-c-cEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEE
Confidence 45555555432 22122334555555555555322 1 1222223445555555555431 33332 123345555555
Q ss_pred EeccCCCCCCCccCCCCCCCcE
Q 013456 402 EIRNCPKLKMPTELTKLSNLKE 423 (442)
Q Consensus 402 ~l~~c~~l~~p~~l~~l~~L~~ 423 (442)
++..+- ......+.++++|+.
T Consensus 372 ~lp~~~-~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 372 ELPKRL-EQYRYDFEDTTKFKW 392 (394)
T ss_dssp EEEGGG-GGGGGGBCTTCEEEE
T ss_pred EECCCC-EEhhheecCCCCCcE
Confidence 554331 111333445555544
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.76 E-value=7.3e-09 Score=96.28 Aligned_cols=87 Identities=18% Similarity=0.155 Sum_probs=73.5
Q ss_pred hcCceeEEEecCC-CCCCCChh-hhhcccccceecccccccccCC-ccccccCCCcEEeecCccccccchhhhcccccce
Q 013456 126 RGYRLLRVLDLED-VYKPVLPE-TIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRH 202 (442)
Q Consensus 126 ~~~~~L~~L~l~~-~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~ 202 (442)
..+++|++|+|++ |.+..++. .|+++++|++|+|++|.+..+| ..|+++++|++|+|++|.++.+|..+.....|+.
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~ 107 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE 107 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCE
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceE
Confidence 4578899999996 88888874 6889999999999999998875 4679999999999999999988887665555999
Q ss_pred eeeccccccc
Q 013456 203 LYLNDIHLQM 212 (442)
Q Consensus 203 L~l~~~~~~~ 212 (442)
|++.+|.+..
T Consensus 108 l~l~~N~~~c 117 (347)
T 2ifg_A 108 LVLSGNPLHC 117 (347)
T ss_dssp EECCSSCCCC
T ss_pred EEeeCCCccC
Confidence 9999987653
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=2.6e-09 Score=99.08 Aligned_cols=109 Identities=20% Similarity=0.254 Sum_probs=50.2
Q ss_pred CceeEEEEeccCCCCCCccccc--CCCCCcEEEeCcc--cccCcc------cccCCCCCCcccEEEecccCCcceEE---
Q 013456 323 PNLRIFTLSLSYLSEDPMPVLG--QLRELKALRLFAH--SYIGEK------MTCGNGGFPQLRVLKLWVLKELKEWT--- 389 (442)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~--~~~~~~------~~~~~~~~~~L~~L~l~~~~~l~~~~--- 389 (442)
++|++|++..|.++......++ .+|+|+.|+|+.+ ...+.. .......||+|+.|.+.+|.......
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l 272 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence 4566666655555433333332 4566666665321 111100 01111246666666666554321110
Q ss_pred eCCCccccccEEEeccCCCCCC-----CccCCCCCCCcEEEeccccc
Q 013456 390 IEEGAMTALEKLEIRNCPKLKM-----PTELTKLSNLKELTLVKKVL 431 (442)
Q Consensus 390 ~~~~~~~~L~~L~l~~c~~l~~-----p~~l~~l~~L~~L~l~~n~l 431 (442)
...+.+|+|++|+++.|.+... +.++.++++|+.|+|++|.+
T Consensus 273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 1113456666666665544331 33334556666666666655
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.70 E-value=6.7e-10 Score=103.89 Aligned_cols=135 Identities=16% Similarity=0.109 Sum_probs=72.4
Q ss_pred ccccceecccccccccC-----Ccccc-ccCCCcEEeecCccccc--cchhhhcccccceeeeccccccccccCC--CCC
Q 013456 151 LQLLRYVGLRRTFIDSI-----PKSLG-DLHSLETLDMKHTNITS--LPKSIWKVKTLRHLYLNDIHLQMSVQKP--FVK 220 (442)
Q Consensus 151 l~~L~~L~L~~~~i~~l-----p~~~~-~l~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~--~~~ 220 (442)
+++|++|++++|.++.. ...+. ..++|++|+|++|.+.. +......+.+|++|++++|.+....... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45677777777766532 11222 23689999999998872 2233345678999999998775322110 001
Q ss_pred -CCCcccccccccccCCCC----CchhhhccccCcceeeEEeeccccc---hhHHhhcCCcccccceeecccc
Q 013456 221 -PSLTNLRTLWGLSIGKKS----PPLNWLENLSDLKNLGLICNIASLG---KITNLIQGLTSLESLRLRSIND 285 (442)
Q Consensus 221 -~~l~~L~~L~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~ 285 (442)
...++|++|++.+|.... .++..+..+++|++|++++|.+... .++..+...++|+.|++++|.+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 123456666655554422 1223334455566666655543311 1233444445555555555543
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=2.6e-08 Score=92.36 Aligned_cols=81 Identities=20% Similarity=0.179 Sum_probs=53.6
Q ss_pred hhcCceeEEEecCCCCC----------CCChhhhhcccccceecccccccccCCccccccCCCcEEeecCcccc-ccchh
Q 013456 125 IRGYRLLRVLDLEDVYK----------PVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNIT-SLPKS 193 (442)
Q Consensus 125 ~~~~~~L~~L~l~~~~~----------~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~-~lp~~ 193 (442)
..++++|+.|.+..... ..+...+..+++|+.|+++++.-..++. + .+++|++|++..|.+. .....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 44677888887764321 2355566778889999998863224443 3 3788999999888766 22233
Q ss_pred hh--cccccceeeecc
Q 013456 194 IW--KVKTLRHLYLND 207 (442)
Q Consensus 194 i~--~l~~L~~L~l~~ 207 (442)
+. .+++|++|+++.
T Consensus 213 l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHSBCTTCCEEEEEC
T ss_pred HHHccCCCCcEEEEec
Confidence 43 688888888853
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=1.5e-07 Score=76.71 Aligned_cols=88 Identities=11% Similarity=0.107 Sum_probs=65.7
Q ss_pred CceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccc-cCcccccCCCCC----CcccEEEecccCCcceEE-eCCCccc
Q 013456 323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSY-IGEKMTCGNGGF----PQLRVLKLWVLKELKEWT-IEEGAMT 396 (442)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~~l~~~~-~~~~~~~ 396 (442)
.+|+.|++++|.+++.....+..+++|+.|+|++|.. ++..... +... ++|++|+|++|+.++.-- .....++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3799999999998877777788999999999999964 4333332 3343 579999999998776411 1224689
Q ss_pred cccEEEeccCCCCCC
Q 013456 397 ALEKLEIRNCPKLKM 411 (442)
Q Consensus 397 ~L~~L~l~~c~~l~~ 411 (442)
+|+.|++++|+..+.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 999999999987765
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.33 E-value=2e-07 Score=76.03 Aligned_cols=83 Identities=14% Similarity=0.156 Sum_probs=66.2
Q ss_pred CCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEE--eCCC---ccccccEEEeccCCCCCC--CccCCCCC
Q 013456 347 RELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWT--IEEG---AMTALEKLEIRNCPKLKM--PTELTKLS 419 (442)
Q Consensus 347 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~---~~~~L~~L~l~~c~~l~~--p~~l~~l~ 419 (442)
..|+.|++++|.+++..... +..+++|++|+|++|..++... .... .+++|+.|+|++|...+. -..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 47999999999987766655 6899999999999998877522 1111 246899999999987665 55577899
Q ss_pred CCcEEEecccc
Q 013456 420 NLKELTLVKKV 430 (442)
Q Consensus 420 ~L~~L~l~~n~ 430 (442)
+|++|+|++|+
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999995
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.32 E-value=2e-05 Score=74.22 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=64.9
Q ss_pred CCCCccccc-cceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCC---CCCChh-hhhcccccceecccc
Q 013456 87 TPSDKKQFE-YLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVY---KPVLPE-TIGKLQLLRYVGLRR 161 (442)
Q Consensus 87 ~~~~~~~~~-~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~l~~-~l~~l~~L~~L~L~~ 161 (442)
....+..++ .|++..+-+... .+... +|.+|.+|+.+.+..+. +..+.. +|.++..|+.+.+..
T Consensus 55 g~~aF~~~~~~L~sI~iP~svt-~Ig~~----------AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~ 123 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDTVT-EIGSN----------AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD 123 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTTCC-EECTT----------TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT
T ss_pred CHhhccCCCCcCEEEEECCCee-EEhHH----------HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC
Confidence 455666663 477776654321 22222 34568888888887543 444443 577777888777654
Q ss_pred cccccCC-ccccccCCCcEEeecCccccccc-hhhhcccccceeeeccc
Q 013456 162 TFIDSIP-KSLGDLHSLETLDMKHTNITSLP-KSIWKVKTLRHLYLNDI 208 (442)
Q Consensus 162 ~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~ 208 (442)
+ +..++ ..+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+
T Consensus 124 ~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 124 S-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp T-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT
T ss_pred c-cceehhhhhhhhcccccccccce-eeeecccceecccccccccccce
Confidence 3 44553 34677788888888643 33333 34556777777777653
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.27 E-value=2.8e-07 Score=76.97 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=76.7
Q ss_pred hhcCceeEEEecCCC-CCCC-----Chhhhhcccccceeccccccccc-----CCccccccCCCcEEeecCccccc----
Q 013456 125 IRGYRLLRVLDLEDV-YKPV-----LPETIGKLQLLRYVGLRRTFIDS-----IPKSLGDLHSLETLDMKHTNITS---- 189 (442)
Q Consensus 125 ~~~~~~L~~L~l~~~-~~~~-----l~~~l~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~l~~---- 189 (442)
+...+.|++|+|++| .+.. +...+...++|++|+|++|.++. +...+...++|++|+|++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 356788888888887 6654 34456667788888888887753 34445556778888888887762
Q ss_pred -cchhhhcccccceeee--ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccc
Q 013456 190 -LPKSIWKVKTLRHLYL--NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIAS 261 (442)
Q Consensus 190 -lp~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 261 (442)
+...+...++|++|++ ++|.+..... ..+...+...+.|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~----------------------~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVE----------------------MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHH----------------------HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHH----------------------HHHHHHHHhCCCcCEEeccCCCCC
Confidence 4555666777888888 6665542211 013345666678888888877554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.24 E-value=3.4e-07 Score=76.50 Aligned_cols=119 Identities=15% Similarity=0.099 Sum_probs=82.9
Q ss_pred hhhhhcccccceeccccc-cccc-----CCccccccCCCcEEeecCcccc-----ccchhhhcccccceeeecccccccc
Q 013456 145 PETIGKLQLLRYVGLRRT-FIDS-----IPKSLGDLHSLETLDMKHTNIT-----SLPKSIWKVKTLRHLYLNDIHLQMS 213 (442)
Q Consensus 145 ~~~l~~l~~L~~L~L~~~-~i~~-----lp~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~ 213 (442)
...+...+.|++|+|++| .++. +...+...++|++|+|++|.+. .+...+...++|++|++++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345667888999999998 7753 4455667788999999999876 2445566678899999988876532
Q ss_pred ccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeE--Eeeccccc---hhHHhhcCCcccccceeecccc
Q 013456 214 VQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGL--ICNIASLG---KITNLIQGLTSLESLRLRSIND 285 (442)
Q Consensus 214 ~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l--~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~ 285 (442)
.. ..+...+...+.|++|++ ++|.+... .+...+...++|+.|++++|.+
T Consensus 109 g~----------------------~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GI----------------------LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HH----------------------HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HH----------------------HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 11 013345666678888888 66765522 2455566678899999988764
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.22 E-value=2.5e-05 Score=73.59 Aligned_cols=318 Identities=12% Similarity=0.072 Sum_probs=151.4
Q ss_pred eeEEEEecCCCCCCCCCCccccccceeEEEEeecCC---CCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCCh-hhh
Q 013456 73 VCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKG---GKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLP-ETI 148 (442)
Q Consensus 73 ~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l 148 (442)
++.+.+. +....+....|.++.+|+.+.+.++... .+... +|..+..|+.+.+..+ +..++ ..+
T Consensus 66 L~sI~iP-~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~----------aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 66 LTSVQIP-DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQ----------AFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp CCEEEEC-TTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTT----------TTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred CEEEEEC-CCeeEEhHHHhhCCccCceEeecCCCCCeeeEechh----------hchhcccceeeccCCc-cceehhhhh
Confidence 5666653 3345567888999999999988654311 12222 3456788888777644 33333 467
Q ss_pred hcccccceecccccccccCC-ccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccc
Q 013456 149 GKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLR 227 (442)
Q Consensus 149 ~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~ 227 (442)
..+..|+.+.+..+ +..++ ..+..+..|+.+.+..+ ++.+........+|+.+.+..+... +.. ..+..+.++.
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~--i~~-~af~~c~~l~ 208 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTR--IGT-NAFSECFALS 208 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCE--ECT-TTTTTCTTCC
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccc--ccc-chhhhccccc
Confidence 88899999998753 44443 35678899999998764 5555554445567888887654221 111 1345555555
Q ss_pred cccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEE
Q 013456 228 TLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELY 307 (442)
Q Consensus 228 ~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~ 307 (442)
........... ....-...+........ .......+..+.+-. .. ......++..+..|+.+.
T Consensus 209 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ip~-~v----~~i~~~aF~~c~~L~~i~ 271 (394)
T 4gt6_A 209 TITSDSESYPA-----------IDNVLYEKSANGDYALI-RYPSQREDPAFKIPN-GV----ARIETHAFDSCAYLASVK 271 (394)
T ss_dssp EEEECCSSSCB-----------SSSCEEEECTTSCEEEE-ECCTTCCCSEEECCT-TE----EEECTTTTTTCSSCCEEE
T ss_pred eeccccccccc-----------ccceeeccccccccccc-ccccccccceEEcCC-cc----eEcccceeeecccccEEe
Confidence 44322111100 00000000000000000 000011111111110 00 001112345555666665
Q ss_pred eccccCC-CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcc
Q 013456 308 LLGRLPG-PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELK 386 (442)
Q Consensus 308 l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 386 (442)
+...... ......-+.+|+.+.+.. .++......|..|.+|+.+.+..+ + ..+....+.++.+|+.+.+.. .++
T Consensus 272 lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v-~~I~~~aF~~C~~L~~i~ip~--sv~ 346 (394)
T 4gt6_A 272 MPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-I-TQILDDAFAGCEQLERIAIPS--SVT 346 (394)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEEECT--TCC
T ss_pred cccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-c-cEehHhHhhCCCCCCEEEECc--ccC
Confidence 5432210 011111125566666642 222223345666777777777543 1 223333466677777777753 233
Q ss_pred eEE-eCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccc
Q 013456 387 EWT-IEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVL 431 (442)
Q Consensus 387 ~~~-~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l 431 (442)
.+. ..+.++++|+.+++.++... -..+..+.+|+.+.+..+.+
T Consensus 347 ~I~~~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 347 KIPESAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp BCCGGGGTTCTTCCEEEESSCHHH--HHTCBCCCCC----------
T ss_pred EEhHhHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEeCCCCE
Confidence 332 23456677777777654321 12345566677776665543
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=2.3e-06 Score=75.19 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=40.5
Q ss_pred cccccceecccccccccC---CccccccCCCcEEeecCccccccchhhhccc--ccceeeeccccccccccC-----CCC
Q 013456 150 KLQLLRYVGLRRTFIDSI---PKSLGDLHSLETLDMKHTNITSLPKSIWKVK--TLRHLYLNDIHLQMSVQK-----PFV 219 (442)
Q Consensus 150 ~l~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~~~-----~~~ 219 (442)
++++|++|+|++|.+..+ |..++.+++|++|+|++|.++.+ ..+..+. +|++|++.+|.+.+.++. ...
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 455566666666555443 23344556666666666655544 2233333 566666666655432221 012
Q ss_pred CCCCcccccccc
Q 013456 220 KPSLTNLRTLWG 231 (442)
Q Consensus 220 ~~~l~~L~~L~~ 231 (442)
+..+++|+.|+.
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 345556665553
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.10 E-value=4.3e-07 Score=79.84 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=57.8
Q ss_pred hhcccccce--ecccccccccCCccc----cccCCCcEEeecCcccccc---chhhhcccccceeeeccccccccccCCC
Q 013456 148 IGKLQLLRY--VGLRRTFIDSIPKSL----GDLHSLETLDMKHTNITSL---PKSIWKVKTLRHLYLNDIHLQMSVQKPF 218 (442)
Q Consensus 148 l~~l~~L~~--L~L~~~~i~~lp~~~----~~l~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~l~~~~~~~~~~~~~ 218 (442)
+...+.|+. ++++.|....++..+ .++++|++|+|++|.++.+ |..+..+++|+.|++++|.+.+...
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~--- 213 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--- 213 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG---
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh---
Confidence 333444444 444555433333221 4567777777777766643 3455677777777777777664321
Q ss_pred CCCCCc--ccccccccccCCCCCch-------hhhccccCcceeeE
Q 013456 219 VKPSLT--NLRTLWGLSIGKKSPPL-------NWLENLSDLKNLGL 255 (442)
Q Consensus 219 ~~~~l~--~L~~L~~~~~~~~~~~~-------~~l~~l~~L~~L~l 255 (442)
+..++ +|++|++.++......+ ..+..+++|+.|+-
T Consensus 214 -l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 214 -LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp -GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred -hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 23333 67777776666543221 23566677776663
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.98 E-value=0.00026 Score=66.18 Aligned_cols=38 Identities=8% Similarity=-0.143 Sum_probs=16.0
Q ss_pred cccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEec
Q 013456 342 VLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLW 380 (442)
Q Consensus 342 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 380 (442)
.|..|.+|+.+.+.++.+.. +....+.++.+|+.+.+.
T Consensus 281 aF~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECC
T ss_pred ccccccccccccccccccce-ehhhhhcCCCCCCEEEcC
Confidence 34445555555554433321 122224444555555443
No 160
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.72 E-value=8.7e-06 Score=80.22 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHHcCeEEEEEecCCCceeEEEcChhhhhhhccccccCCe
Q 013456 2 APEDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGV 53 (442)
Q Consensus 2 ~~ed~~~~~~~~Lv~r~li~~~~~~~~~~~~~~~mhdlv~d~~~~i~~~~~~ 53 (442)
++||+|+ ||++|++||||+++..+ +..+|+|||+|||+|+.++.++++
T Consensus 426 ~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 426 LDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 5789998 99999999999987642 456899999999999999987654
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.57 E-value=0.0028 Score=59.07 Aligned_cols=138 Identities=11% Similarity=0.052 Sum_probs=88.9
Q ss_pred cCCcCCCceEEeccccCC-CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCccc
Q 013456 297 LNNHKELKELYLLGRLPG-PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLR 375 (442)
Q Consensus 297 ~~~~~~L~~l~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 375 (442)
+..+.+|+.+.+...... ......-+..|+.+.+..+ ++......+..+.+|+.+.+..+ + .......+..+++|+
T Consensus 213 f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i-~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-V-KTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-C-SEECTTTTTTCTTCC
T ss_pred cccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-c-eeccccccccccccc
Confidence 445667777777544211 1111122368888888665 33333456788899999998654 2 233344477899999
Q ss_pred EEEecccCCcceEE-eCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCCCCCC
Q 013456 376 VLKLWVLKELKEWT-IEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPEDAWP 440 (442)
Q Consensus 376 ~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~~~~ 440 (442)
.+.+.++ .++.+. ..+.++++|+.+.|.+. ...+ ...+.+|.+|+++.+..+ ++.+.+..|.
T Consensus 290 ~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~ 353 (379)
T 4h09_A 290 KVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFE 353 (379)
T ss_dssp EEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred ccccccc-ccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence 9999763 455554 34567899999999654 3334 667889999999988644 6666665553
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.49 E-value=0.0018 Score=53.64 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=32.1
Q ss_pred cCceeEEEecCCC-CCCC-----Chhhhhcccccceeccccccccc-----CCccccccCCCcEEeecCcccc
Q 013456 127 GYRLLRVLDLEDV-YKPV-----LPETIGKLQLLRYVGLRRTFIDS-----IPKSLGDLHSLETLDMKHTNIT 188 (442)
Q Consensus 127 ~~~~L~~L~l~~~-~~~~-----l~~~l~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~l~ 188 (442)
.-+.|+.|+|+++ .++. +-..+..-+.|+.|+|++|.++. +.+.+..-+.|++|+|++|.|.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3456666666653 4432 23344444566666666665542 2223333455666666666554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.10 E-value=0.008 Score=46.32 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=23.5
Q ss_pred EEecCCCCCC--CChhhhhcccccceecccccccccCCcc-ccccCCCcEEeecCc
Q 013456 133 VLDLEDVYKP--VLPETIGKLQLLRYVGLRRTFIDSIPKS-LGDLHSLETLDMKHT 185 (442)
Q Consensus 133 ~L~l~~~~~~--~l~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~ 185 (442)
+++.++..+. .+|..+. .+|++|+|++|.|..+|.. |..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4444544444 4443321 2345555555555555332 344445555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.96 E-value=0.0091 Score=46.03 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=44.5
Q ss_pred ceecccccccc--cCCccccccCCCcEEeecCccccccchh-hhcccccceeeecccccc
Q 013456 155 RYVGLRRTFID--SIPKSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYLNDIHLQ 211 (442)
Q Consensus 155 ~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~ 211 (442)
..++-+++.++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|+.|++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777888887 8887653 5799999999999988876 567899999999998654
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.68 E-value=0.0066 Score=50.28 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=72.7
Q ss_pred hhcccccceeccccc-cccc-----CCccccccCCCcEEeecCcccc-----ccchhhhcccccceeeecccccccccc-
Q 013456 148 IGKLQLLRYVGLRRT-FIDS-----IPKSLGDLHSLETLDMKHTNIT-----SLPKSIWKVKTLRHLYLNDIHLQMSVQ- 215 (442)
Q Consensus 148 l~~l~~L~~L~L~~~-~i~~-----lp~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~~- 215 (442)
+.+-+.|++|+|+++ .|+. +-+.+..-+.|+.|+|++|.+. .+...+..-..|++|+++.|.+.....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 445578999999885 6652 3445566788999999999876 344556667889999999988754321
Q ss_pred -CCCCCCCCcccccccccccCC--CC-----CchhhhccccCcceeeEEeec
Q 013456 216 -KPFVKPSLTNLRTLWGLSIGK--KS-----PPLNWLENLSDLKNLGLICNI 259 (442)
Q Consensus 216 -~~~~~~~l~~L~~L~~~~~~~--~~-----~~~~~l~~l~~L~~L~l~~~~ 259 (442)
....+..-+.|+.|++..+.. .+ .+...+..-+.|+.|+++.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 111234445688888765432 11 234456666778888777653
No 166
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.43 E-value=0.01 Score=64.49 Aligned_cols=45 Identities=11% Similarity=0.198 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHcCeEEEEEecCCCceeEEEcChhhhhhhccccccC
Q 013456 4 EDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESG 51 (442)
Q Consensus 4 ed~~~~~~~~Lv~r~li~~~~~~~~~~~~~~~mhdlv~d~~~~i~~~~ 51 (442)
++.+++++++|+++|||+... .|+..+|+|||+||++|+..+.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 678999999999999999764 455678999999999999987665
No 167
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=92.15 E-value=0.12 Score=51.09 Aligned_cols=42 Identities=10% Similarity=0.155 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCeEEEEEecCCCceeEEEcChhhhhhhcccc
Q 013456 4 EDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDA 48 (442)
Q Consensus 4 ed~~~~~~~~Lv~r~li~~~~~~~~~~~~~~~mhdlv~d~~~~i~ 48 (442)
++.++.++++|+++|||+.... +...+|+|||+|+++++...
T Consensus 408 ~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhh
Confidence 3567899999999999996543 44568999999999998763
No 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=88.18 E-value=0.18 Score=52.59 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcCeEEEEEecCCCceeEEEcChhhhhhh
Q 013456 4 EDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYL 44 (442)
Q Consensus 4 ed~~~~~~~~Lv~r~li~~~~~~~~~~~~~~~mhdlv~d~~ 44 (442)
++.|++++++|++||||+.. +...+|+|||++++++
T Consensus 401 eedAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 401 KSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELK 436 (1221)
T ss_dssp SHHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHh
Confidence 34689999999999999872 2235799999999966
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.03 E-value=1.4e+02 Score=20.90 Aligned_cols=38 Identities=21% Similarity=0.044 Sum_probs=22.9
Q ss_pred CCCCCCcccEEEecccCCcceEE-eCCCccccccEEEeccC
Q 013456 367 GNGGFPQLRVLKLWVLKELKEWT-IEEGAMTALEKLEIRNC 406 (442)
Q Consensus 367 ~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c 406 (442)
.+.++.+|+.+.|-. .++.+. ..+.+|.+|+.+.+...
T Consensus 15 aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCC
Confidence 366677777777754 233332 23456777777777653
No 170
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=20.13 E-value=81 Score=22.69 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHHHHcCeEEEEEecCCCceeEEEcChhhhhhhcccccc
Q 013456 1 MAPEDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAES 50 (442)
Q Consensus 1 ~~~ed~~~~~~~~Lv~r~li~~~~~~~~~~~~~~~mhdlv~d~~~~i~~~ 50 (442)
|.|.++|+++.+.|....+++.++.-.-|.++.+-=.+.+.+....+..+
T Consensus 56 ~~P~~iA~~i~~~l~~~~~i~~vevagpGFINf~l~~~~~~~~l~~il~~ 105 (109)
T 3gdz_A 56 MAPRQLAEQVLSHLDLNGIANKVEIAGPGFINIFLDPAFLADNVNRALQS 105 (109)
T ss_dssp SCHHHHHHHHHHHCCCTTTEEEEEEETTTEEEEEECHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhcCcCCcEeEEEEeCCCeEEEEECHHHHHHHHHHHHhc
Confidence 47899999999999777788877654346666553344455544444433
Done!