BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013457
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/393 (82%), Positives = 356/393 (90%), Gaps = 4/393 (1%)
Query: 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV 76
P R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR SPTQLSALDGH+IVSV
Sbjct: 14 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV 73
Query: 77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHC 136
TCGADHT AYS+S M+VYSWGWGDFGRLGHGNSSDLFTPLPIKALH +R+KQIACGDSHC
Sbjct: 74 TCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHC 133
Query: 137 LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE 196
LAVT+EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IKMVAAGAEH+ AV EDG+
Sbjct: 134 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 193
Query: 197 LYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSK 256
LYGWGWGRYGNLGLGDR DRL+PE+V + EKM MVACGWRHTISVS SG LY+YGWSK
Sbjct: 194 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSK 253
Query: 257 YGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGD 316
YGQLGHGD +DHL+P +LEAL SFISQISGGWRHTMA+TSDGKLYGWGWNKFGQVGVG+
Sbjct: 254 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN 313
Query: 317 NVDHCSPVQVKFPLD----QISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPK 372
N+D CSPVQV+FP D Q+SCGWRHTLAVTER NVF+WGRGTNGQLG GES DRN PK
Sbjct: 314 NLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPK 373
Query: 373 IIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSE 405
IIE LS+DG+ GQ+I SS DPSSGK+WVSP+E
Sbjct: 374 IIEALSVDGASGQHIESSNIDPSSGKSWVSPAE 406
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 5/159 (3%)
Query: 224 TVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFIS 283
T K+++++ G H++++ S + S+G + GQLGHGD +D P QL AL I
Sbjct: 12 TAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIV 71
Query: 284 QISGGWRHTMAVTSDG-KLYGWGWNKFGQVGVGDNVDHCSPVQVK----FPLDQISCGWR 338
++ G HT+A + G ++Y WGW FG++G G++ D +P+ +K + QI+CG
Sbjct: 72 SVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS 131
Query: 339 HTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPL 377
H LAVT V SWGR NGQLG G++ D P+ I+
Sbjct: 132 HCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF 170
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/373 (83%), Positives = 339/373 (90%), Gaps = 4/373 (1%)
Query: 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV 76
P R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR SPTQLSALDGH+IVSV
Sbjct: 2 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV 61
Query: 77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHC 136
TCGADHT AYS+S M+VYSWGWGDFGRLGHGNSSDLFTPLPIKALH +R+KQIACGDSHC
Sbjct: 62 TCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHC 121
Query: 137 LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE 196
LAVT+EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IKMVAAGAEH+ AV EDG+
Sbjct: 122 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181
Query: 197 LYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSK 256
LYGWGWGRYGNLGLGDR DRL+PE+V + EKM MVACGWRHTISVS SG LY+YGWSK
Sbjct: 182 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSK 241
Query: 257 YGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGD 316
YGQLGHGD +DHL+P +LEAL SFISQISGGWRHTMA+TSDGKLYGWGWNKFGQVGVG+
Sbjct: 242 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN 301
Query: 317 NVDHCSPVQVKFPLD----QISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPK 372
N+D CSPVQV+FP D Q+SCGWRHTLAVTER NVF+WGRGTNGQLG GES DRN PK
Sbjct: 302 NLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPK 361
Query: 373 IIEPLSLDGSKGQ 385
IIE LS+DG+ GQ
Sbjct: 362 IIEALSVDGASGQ 374
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/369 (83%), Positives = 336/369 (91%), Gaps = 4/369 (1%)
Query: 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV 76
P R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR SPTQLSALDGH+IVSV
Sbjct: 2 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV 61
Query: 77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHC 136
TCGADHT AYS+S M+VYSWGWGDFGRLGHGNSSDLFTPLPIKALH +R+KQIACGDSHC
Sbjct: 62 TCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHC 121
Query: 137 LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE 196
LAVT+EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IKMVAAGAEH+ AV EDG+
Sbjct: 122 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181
Query: 197 LYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSK 256
LYGWGWGRYGNLGLGDR DRL+PE+V + EKM MVACGWRHTISVS SG LY+YGWSK
Sbjct: 182 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSK 241
Query: 257 YGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGD 316
YGQLGHGD +DHL+P +LEAL SFISQISGG+RHTMA+TSDGKLYGWGWNKFGQVGVG+
Sbjct: 242 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGN 301
Query: 317 NVDHCSPVQVKFPLD----QISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPK 372
N+D CSPVQV+FP D Q+SCGWRHTLAVTER NVF+WGRGTNGQLG GES DRN PK
Sbjct: 302 NLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPK 361
Query: 373 IIEPLSLDG 381
IIE LS+DG
Sbjct: 362 IIEALSVDG 370
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 626 bits (1614), Expect = e-180, Method: Compositional matrix adjust.
Identities = 304/369 (82%), Positives = 329/369 (89%), Gaps = 4/369 (1%)
Query: 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV 76
P R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR SPTQLSALDGH+IVSV
Sbjct: 4 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV 63
Query: 77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHC 136
TCGADHT AYS+S +VYSWGWGDFGRLGHGNSSDLFTPLPIKALH +R+KQIACGDSHC
Sbjct: 64 TCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHC 123
Query: 137 LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE 196
LAVT EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IK VAAGAEH+ AV EDG+
Sbjct: 124 LAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGD 183
Query: 197 LYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSK 256
LYGWGWGRYGNLGLGDR DRL+PE+V + EK VACGWRHTISVS SG LY+YGWSK
Sbjct: 184 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSK 243
Query: 257 YGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGD 316
YGQLGHGD +DHL+P +LEAL SFISQISGG RHT A+TSDGKLYGWGWNKFGQVGVG+
Sbjct: 244 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGN 303
Query: 317 NVDHCSPVQVKFPLD----QISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPK 372
N+D CSPVQV+FP D Q+SCGWRHTLAVTER NVF+WGRGTNGQLG GES DRN PK
Sbjct: 304 NLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPK 363
Query: 373 IIEPLSLDG 381
IIE LS+DG
Sbjct: 364 IIEALSVDG 372
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 5/159 (3%)
Query: 224 TVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFIS 283
T K+++++ G H++++ S + S+G + GQLGHGD +D P QL AL I
Sbjct: 2 TAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIV 61
Query: 284 QISGGWRHTMAVTSDG-KLYGWGWNKFGQVGVGDNVDHCSPVQVK----FPLDQISCGWR 338
++ G HT+A + G ++Y WGW FG++G G++ D +P+ +K + QI+CG
Sbjct: 62 SVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS 121
Query: 339 HTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPL 377
H LAVT V SWGR NGQLG G++ D P+ I+
Sbjct: 122 HCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF 160
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 150/279 (53%), Gaps = 3/279 (1%)
Query: 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVT 77
F + +++G H +AL S V SWG EDG+LGHG+ P + +L G E+V V
Sbjct: 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA 165
Query: 78 CGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSH 135
G H+ + + +Y+WG G +GRLGH +S D P ++AL RV IACG D+
Sbjct: 166 AGGAHSACVTAA-GDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQ 224
Query: 136 CLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDG 195
L +T + V SWG G+LG G ++ VP K+ + G+ + V G++ SVA+ + G
Sbjct: 225 TLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSG 284
Query: 196 ELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWS 255
+Y WG G Y LG G + P +V + +K++ +A G H + + G +Y++G +
Sbjct: 285 AVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDN 344
Query: 256 KYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMA 294
GQLG G P + AL+ +++++ G HT+A
Sbjct: 345 DEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/354 (31%), Positives = 183/354 (51%), Gaps = 11/354 (3%)
Query: 43 WGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFG 102
WG GQLG + PT AL V + G + T + ++Y+ G+G G
Sbjct: 25 WGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLI-GGEQTLFAVTADGKLYATGYGAGG 83
Query: 103 RLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGT 160
RLG G + + TP ++++ + +K++A G HCLA++ EGEV SWG ++G+LG G
Sbjct: 84 RLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN 143
Query: 161 TEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPE 220
P+ +++ G+ + VAAG HS V G+LY WG GRYG LG D D+L P+
Sbjct: 144 RSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPK 203
Query: 221 KVATVDREKMVMVACGW--RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR 278
V + ++V +ACG T+ ++ ++S+G YG+LG G VP ++++L
Sbjct: 204 LVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT 263
Query: 279 ESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVK----FPLDQIS 334
+ ++ G + ++A+T G +Y WG + ++G G + P QV+ + I+
Sbjct: 264 GLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIA 323
Query: 335 CGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIA 388
G H + TE V++WG GQLG G ++ P+++ +L G K +A
Sbjct: 324 TGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVA--ALQGKKVNRVA 375
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 128/227 (56%), Gaps = 1/227 (0%)
Query: 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA 80
V+ ++AG +HS + + + +WG+G G+LGH D+ED+L P + AL GH +V + CG+
Sbjct: 161 VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS 220
Query: 81 -DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAV 139
D T V+SWG GD+G+LG G S P+ I +L L V ++ CG +A+
Sbjct: 221 GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVAL 280
Query: 140 TVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYG 199
T G V +WG+ +LG G+ + P+++Q +G + +A G+ H V EDGE+Y
Sbjct: 281 TKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYT 340
Query: 200 WGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSS 246
WG G LG G N P VA + +K+ VACG HT++ S+S
Sbjct: 341 WGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWSTS 387
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 176/333 (52%), Gaps = 10/333 (3%)
Query: 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEI--VS 75
RPV LI G A+ + + + G G G+LG G E +PT L ++ I V+
Sbjct: 53 LRPVQLI-GGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVA 111
Query: 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSH 135
V G H A S S +VYSWG + G+LGHGN S P I++L + V +A G +H
Sbjct: 112 VNSGGKHCLALS-SEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAH 170
Query: 136 CLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA--EHSVAVAE 193
VT G++ +WG+ + G+LG +ED L P+ ++A +G + +A G+ ++ + +
Sbjct: 171 SACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTD 230
Query: 194 DGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYG 253
D ++ WG G YG LG G + +P K+ ++ +V V CG + +++++ SG +Y++G
Sbjct: 231 DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWG 290
Query: 254 WSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVG 313
Y +LGHG P Q++ L+ + I+ G H + T DG++Y WG N GQ+G
Sbjct: 291 KGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLG 350
Query: 314 VGDNVDHCSPVQVKF----PLDQISCGWRHTLA 342
G P V +++++CG HTLA
Sbjct: 351 DGTTNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 167/301 (55%), Gaps = 10/301 (3%)
Query: 86 YSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEV 145
Y + +Y WG G+LG + + P P +AL +LR Q+ G+ AVT +G++
Sbjct: 15 YFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKL 74
Query: 146 QSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA--AGAEHSVAVAEDGELYGWGWG 203
+ G G+LG+G TE P L++ + V IK VA +G +H +A++ +GE+Y WG
Sbjct: 75 YATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA 134
Query: 204 RYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHG 263
G LG G+R+ P + ++ ++V VA G H+ V+++G LY++G +YG+LGH
Sbjct: 135 EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 194
Query: 264 DFKDHLVPCQLEALRESFISQIS--GGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHC 321
D +D L P +EAL+ + I+ G T+ +T D ++ WG +G++G G + D C
Sbjct: 195 DSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS-DGC 253
Query: 322 S-PVQVK----FPLDQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEP 376
P+++ + ++ CG + ++A+T+ V++WG+G +LGHG P+ ++
Sbjct: 254 KVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG 313
Query: 377 L 377
L
Sbjct: 314 L 314
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 238 RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTS 297
R + SG +Y +G + GQLG + VP EAL Q+ GG + AVT+
Sbjct: 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTA 70
Query: 298 DGKLYGWGWNKFGQVGVGDNVDHCSPV------QVKFPLDQISCGWRHTLAVTERQNVFS 351
DGKLY G+ G++G+G +P V ++ G +H LA++ V+S
Sbjct: 71 DGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYS 130
Query: 352 WGRGTNGQLGHGESSDRNSPKIIEPL 377
WG +G+LGHG S + P++IE L
Sbjct: 131 WGEAEDGKLGHGNRSPCDRPRVIESL 156
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 19 RPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTC 78
+ V+ I+ G+ H V V +WG ++GQLG G P ++AL G ++ V C
Sbjct: 317 KKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVAC 376
Query: 79 GADHTTAYSES 89
G+ HT A+S S
Sbjct: 377 GSAHTLAWSTS 387
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 183/358 (51%), Gaps = 30/358 (8%)
Query: 39 IVCSWGRGEDGQLGHGD-AEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWG 97
+V + G+G+ GQLG G+ +R P +S + ++V G HT S+S QVYS+G
Sbjct: 17 LVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSG-QVYSFG 73
Query: 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWG--RNQNGQ 155
D G LG S + +P K +V Q++ GDSH A+T +G V WG R+ NG
Sbjct: 74 CNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGV 133
Query: 156 LG-LGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLG----- 209
+G L + S+VP ++Q V + VA+G +H V + DG+LY G G G LG
Sbjct: 134 IGLLEPMKKSMVPVQVQL--DVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPEL 191
Query: 210 LGDRNDR------LIPEKVATVDR-----EKMVMVACGWRHTISVSSSGRLYSYGWSKYG 258
+R R L+P+ V R + CG T ++S G +Y +G S Y
Sbjct: 192 FANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYH 251
Query: 259 QLGHGDFKDHLVPCQLEALRESFISQI--SGGWRHTMAVTSDGKLYGWGWNKFGQVGVGD 316
QLG + +P L + + S S + SGG HT+ + S+GK Y G ++G++G+G+
Sbjct: 252 QLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGE 311
Query: 317 NVDHCS-PVQV-KFP-LDQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSP 371
+ S P + + P + ++CG AVT+ VF+WG GTN QLG G+ D SP
Sbjct: 312 GAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSP 369
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 104/243 (42%), Gaps = 24/243 (9%)
Query: 20 PVLLISAGASHSVALLSGNIVCSWGRGEDGQLGH----------GDAEDRLSPTQLSALD 69
PV+ +++G H V L + + + G GE GQLG +RL + L
Sbjct: 154 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLK 213
Query: 70 -----GH-EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHS 123
GH CGA T A S VY +G ++ +LG + F P + + +
Sbjct: 214 SRGSRGHVRFQDAFCGAYFTFAISHEG-HVYGFGLSNYHQLGTPGTESCFIPQNLTSFKN 272
Query: 124 LRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGT-TEDSLVPQKLQAFEGVSIKM 180
+ G H + + EG+ S GR + G+LGLG E+ +P + VS
Sbjct: 273 STKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVS--S 330
Query: 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVM--VACGWR 238
VA GA AV +DG ++ WG G LG G D P ++ E V+ V+ G +
Sbjct: 331 VACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQ 390
Query: 239 HTI 241
HT+
Sbjct: 391 HTV 393
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 80/174 (45%), Gaps = 6/174 (3%)
Query: 27 GASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV-TCGADHTTA 85
GA + A+ V +G QLG E P L++ V G H T
Sbjct: 229 GAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTV 288
Query: 86 YSESCMQVYSWGWGDFGRLGHGN-SSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGE 144
+S + YS G ++GRLG G + + P I L + V +ACG S AVT +G
Sbjct: 289 CMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTKDGR 346
Query: 145 VQSWGRNQNGQLGLGTTEDSLVPQKL--QAFEGVSIKMVAAGAEHSVAVAEDGE 196
V +WG N QLG G ED+ P ++ + E + V++G +H+V + +D E
Sbjct: 347 VFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 400
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 183/358 (51%), Gaps = 30/358 (8%)
Query: 39 IVCSWGRGEDGQLGHGD-AEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWG 97
+V + G+G+ GQLG G+ +R P +S + ++V G HT S+S QVYS+G
Sbjct: 28 LVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSG-QVYSFG 84
Query: 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWG--RNQNGQ 155
D G LG S + +P K +V Q++ GDSH A+T +G V WG R+ NG
Sbjct: 85 CNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGV 144
Query: 156 LG-LGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLG----- 209
+G L + S+VP ++Q V + VA+G +H V + DG+LY G G G LG
Sbjct: 145 IGLLEPMKKSMVPVQVQL--DVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPEL 202
Query: 210 LGDRNDR------LIPEKVATVDR-----EKMVMVACGWRHTISVSSSGRLYSYGWSKYG 258
+R R L+P+ V R + CG T ++S G +Y +G S Y
Sbjct: 203 FANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYH 262
Query: 259 QLGHGDFKDHLVPCQLEALRESFISQI--SGGWRHTMAVTSDGKLYGWGWNKFGQVGVGD 316
QLG + +P L + + S S + SGG HT+ + S+GK Y G ++G++G+G+
Sbjct: 263 QLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGE 322
Query: 317 NVDHCS-PVQV-KFP-LDQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSP 371
+ S P + + P + ++CG AVT+ VF+WG GTN QLG G+ D SP
Sbjct: 323 GAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSP 380
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 104/243 (42%), Gaps = 24/243 (9%)
Query: 20 PVLLISAGASHSVALLSGNIVCSWGRGEDGQLGH----------GDAEDRLSPTQLSALD 69
PV+ +++G H V L + + + G GE GQLG +RL + L
Sbjct: 165 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLK 224
Query: 70 -----GH-EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHS 123
GH CGA T A S VY +G ++ +LG + F P + + +
Sbjct: 225 SRGSRGHVRFQDAFCGAYFTFAISHEG-HVYGFGLSNYHQLGTPGTESCFIPQNLTSFKN 283
Query: 124 LRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGT-TEDSLVPQKLQAFEGVSIKM 180
+ G H + + EG+ S GR + G+LGLG E+ +P + VS
Sbjct: 284 STKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVS--S 341
Query: 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVM--VACGWR 238
VA GA AV +DG ++ WG G LG G D P ++ E V+ V+ G +
Sbjct: 342 VACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQ 401
Query: 239 HTI 241
HT+
Sbjct: 402 HTV 404
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 80/174 (45%), Gaps = 6/174 (3%)
Query: 27 GASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV-TCGADHTTA 85
GA + A+ V +G QLG E P L++ V G H T
Sbjct: 240 GAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTV 299
Query: 86 YSESCMQVYSWGWGDFGRLGHGN-SSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGE 144
+S + YS G ++GRLG G + + P I L + V +ACG S AVT +G
Sbjct: 300 CMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTKDGR 357
Query: 145 VQSWGRNQNGQLGLGTTEDSLVPQKL--QAFEGVSIKMVAAGAEHSVAVAEDGE 196
V +WG N QLG G ED+ P ++ + E + V++G +H+V + +D E
Sbjct: 358 VFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 411
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 112/370 (30%), Positives = 174/370 (47%), Gaps = 47/370 (12%)
Query: 34 LLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDG-HEIVSVTCGADHTTAYSESCMQ 92
+L +VC G G+ GQLG G ED L +LS + G + V ++ G H ++S
Sbjct: 41 VLGNVLVC--GNGDVGQLGLG--EDILERKRLSPVAGIPDAVDISAGGMHNLVLTKS-GD 95
Query: 93 VYSWGWGDFGRLGHGNSSD------LFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQ 146
+YS+G D G LG S D LP KAL I+ GDSH + +G V
Sbjct: 96 IYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALC------ISAGDSHSACLLEDGRVF 149
Query: 147 SWG--RNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGR 204
+WG R+ +G +GL + P L EG +A+GA+H V + G+++ G
Sbjct: 150 AWGSFRDSHGNMGLTIDGNKRTPIDL--MEGTVCCSIASGADHLVILTTAGKVFTVGCAE 207
Query: 205 YGNLG-LGDRN----------DRLIPEKVATVDREKMVMV-ACGWRHTISVSSSGRLYSY 252
G LG L +R+ D L P ++ + + A + + S + +++
Sbjct: 208 QGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWAT 267
Query: 253 GWSKYGQLGH----GDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNK 308
G + + QL H +F L P + E L++ I I+GG HT+ +T+D K G +
Sbjct: 268 GLNNFKQLAHETKGKEFA--LTPIKTE-LKD--IRHIAGGQHHTVILTTDLKCSVVGRPE 322
Query: 309 FGQVGVGDNVDHC-SPVQVKFPLDQI---SCGWRHTLAVTERQNVFSWGRGTNGQLGHGE 364
+G++G+GD D P VK ++I CG + AVT ++SWG G N QLG G+
Sbjct: 323 YGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGD 382
Query: 365 SSDRNSPKII 374
D P ++
Sbjct: 383 GDDELEPIVV 392
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 137/325 (42%), Gaps = 34/325 (10%)
Query: 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED-RLSPTQLSALDGHEIVSVTCGADH 82
ISAG H++ L + S+G ++G LG +ED S L L G + ++ G H
Sbjct: 80 ISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALC-ISAGDSH 138
Query: 83 TTAYSESCMQVYSWGWGDFGRLGHGN---SSDLFTPLPIKALHSLRVKQIACGDSHCLAV 139
+ E + WG F R HGN + D PI + IA G H + +
Sbjct: 139 SACLLEDG---RVFAWGSF-RDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVIL 194
Query: 140 TVEGEVQSWGRNQNGQLGLGT-----------TEDSLVPQKL-----QAFEGV-SIKMVA 182
T G+V + G + GQLG + D L P +L + FE + +
Sbjct: 195 TTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCT 254
Query: 183 AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTIS 242
E V ++ G + L + + T + + + +A G HT+
Sbjct: 255 FMRESQTQV-----IWATGLNNFKQLAHETKGKEFALTPIKT-ELKDIRHIAGGQHHTVI 308
Query: 243 VSSSGRLYSYGWSKYGQLGHGDFKDHL-VPCQLEALRESFISQISGGWRHTMAVTSDGKL 301
+++ + G +YG+LG GD KD + P ++ L E +S + G + AVT DGKL
Sbjct: 309 LTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVS-VGCGEVCSYAVTIDGKL 367
Query: 302 YGWGWNKFGQVGVGDNVDHCSPVQV 326
Y WG Q+GVGD D P+ V
Sbjct: 368 YSWGSGVNNQLGVGDGDDELEPIVV 392
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 115/266 (43%), Gaps = 22/266 (8%)
Query: 22 LLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD 81
L ISAG SHS LL V +WG D G D T + ++G S+ GAD
Sbjct: 130 LCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGAD 189
Query: 82 HTTAYSESCMQVYSWGW---GDFGRL--------GHGNSSDLFTPLPIKALHSLRVKQIA 130
H + + +V++ G G GRL G DL P + + + I
Sbjct: 190 HLVILT-TAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAI- 247
Query: 131 CGDSHCLAVTVEGEVQ---SWGRNQNGQLGLGTT--EDSLVPQKLQAFEGVSIKMVAAGA 185
++C + E + Q + G N QL T E +L P K + + I+ +A G
Sbjct: 248 WATNYCTFMR-ESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKD---IRHIAGGQ 303
Query: 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSS 245
H+V + D + G YG LGLGD D + + EK+V V CG + +V+
Sbjct: 304 HHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTI 363
Query: 246 SGRLYSYGWSKYGQLGHGDFKDHLVP 271
G+LYS+G QLG GD D L P
Sbjct: 364 DGKLYSWGSGVNNQLGVGDGDDELEP 389
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 140 TVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM-VAAGAEHSVAVAEDGELY 198
TV G V G GQLGLG ED L ++L G+ + ++AG H++ + + G++Y
Sbjct: 40 TVLGNVLVCGNGDVGQLGLG--EDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIY 97
Query: 199 GWGWGRYGNLGLGDRNDRLIPEKVATVDRE-KMVMVACGWRHTISVSSSGRLYSYGWSK- 256
+G G LG D ++ K +D K + ++ G H+ + GR++++G +
Sbjct: 98 SFGCNDEGALGR-DTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRD 156
Query: 257 -YGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVG 313
+G +G + P L + + I+ G H + +T+ GK++ G + GQ+G
Sbjct: 157 SHGNMGLTIDGNKRTPIDL--MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLG 212
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP 62
++ + G S A+ + SWG G + QLG GD +D L P
Sbjct: 348 IVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEP 389
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 137/280 (48%), Gaps = 29/280 (10%)
Query: 21 VLLISAGASHSVALLSGNIVCSWG--RGEDGQLGHGDAEDRL--SPTQLSALDGHEIVSV 76
V+ ++A + S AL S V +WG R +G LG + ++ +P ++ + IV +
Sbjct: 150 VVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQL 209
Query: 77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDL----FTPLPIKALHSLRVKQIACG 132
G DH E M V++WG G +LG P P H VK IA G
Sbjct: 210 APGKDHILFLDEEGM-VFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRH---VKYIASG 265
Query: 133 DSHCLAVTVEGEVQSWGRNQNGQLGLGT-TED-SLV--PQKLQAFEGVSIKMVAAGAEHS 188
++HC A+T + ++ SWG NQ GQ G+ ED +LV P++L + V I+ +AAG HS
Sbjct: 266 ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHS 325
Query: 189 VAVAEDGELYGWGWGRYGNLGLGDRN------------DRLIPEKVATVDREKMVMVACG 236
+ +++DG+LY G +G+ N R +P + K VA G
Sbjct: 326 LILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAG 385
Query: 237 WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHL-VPCQLE 275
H+++V+ +G YS+G+ + +G G F+D VP +++
Sbjct: 386 SHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIK 425
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 140/329 (42%), Gaps = 52/329 (15%)
Query: 76 VTCGADHTTAY-SESCMQVYSWGWGDFGRLGHG---NSSDLFTPL--PIKALHSLRVKQI 129
+ D+ Y S + ++ WG G LG G + ++ P P ++
Sbjct: 13 INAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISF 72
Query: 130 ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTT-----------------------EDSLV 166
A G H LA+ E V SWG N G LG T+ E
Sbjct: 73 AVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELEST 132
Query: 167 PQKL--QAF----EGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRL--- 217
P K+ ++F EG + +AA S A+ +GE+Y WG R LG D++
Sbjct: 133 PAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQ 192
Query: 218 -IPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHG---DFKDHLVPCQ 273
P KV T + +V +A G H + + G ++++G + QLG F+ + +
Sbjct: 193 KTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPR 252
Query: 274 LEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDH----CSPVQVKFP 329
LR + I+ G H A+T D KL WG N+FGQ GV ++V+ P ++ P
Sbjct: 253 PFGLRH--VKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP 310
Query: 330 ----LDQISCGWRHTLAVTERQNVFSWGR 354
+ I+ G H+L +++ +++S GR
Sbjct: 311 DNVVIRSIAAGEHHSLILSQDGDLYSCGR 339
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/369 (24%), Positives = 156/369 (42%), Gaps = 61/369 (16%)
Query: 17 PFRP-----VLLISAGASHSVALLSGNIVCSWGRGEDGQLGH--GDAEDRL--------- 60
PF P ++ + G H++AL + V SWG + G LG +A+++L
Sbjct: 60 PFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSS 119
Query: 61 ------------SPTQLS------ALDGHEIVSVTCGADHTTAYSESCMQVYSWGW--GD 100
+P ++ +GH++V + D+ + S +VY+WG +
Sbjct: 120 DDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLA-ATDNMSCALFSNGEVYAWGTFRCN 178
Query: 101 FGRLGHGNSSDLF--TPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGL 158
G LG TP + + Q+A G H L + EG V +WG Q QLG
Sbjct: 179 EGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGR 238
Query: 159 GTTED-SLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLG-DRNDR 216
E L + F +K +A+G H A+ +D +L WG ++G G+ D D
Sbjct: 239 KVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDG 298
Query: 217 LI---PEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLG------------ 261
+ P+++A D + +A G H++ +S G LYS G ++G
Sbjct: 299 ALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYK 358
Query: 262 --HGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVD 319
HG + +P +L + + ++ G H++AV +G Y WG+ + VG+G D
Sbjct: 359 DVHGKARAVPLPTKLNNVPK--FKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFED 416
Query: 320 HCS-PVQVK 327
P ++K
Sbjct: 417 DTEVPTRIK 425
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 113/245 (46%), Gaps = 27/245 (11%)
Query: 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED-RLSPTQLSALDGHEIVSVTCG 79
++ ++ G H + L +V +WG G+ QLG E RL + + G
Sbjct: 206 IVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASG 265
Query: 80 ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSD----LFTPLPIKALHSLRVKQIACGDSH 135
+H A ++ ++ SWG FG+ G + + P + ++ ++ IA G+ H
Sbjct: 266 ENHCFALTKD-NKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHH 324
Query: 136 CLAVTVEGEVQSWGRNQNGQLGL--------------GTTEDSLVPQKLQAFEGVSIKMV 181
L ++ +G++ S GR ++G+ G +P KL K V
Sbjct: 325 SLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSV 382
Query: 182 AAGAEHSVAVAEDGELYGWGWGRYGNLGLGD-RNDRLIPEKV---ATVDREKMVMVACGW 237
AAG+ HSVAVA++G Y WG+G +GLG +D +P ++ AT D +++V CG
Sbjct: 383 AAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDH-NIILVGCGG 441
Query: 238 RHTIS 242
+ ++S
Sbjct: 442 QFSVS 446
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 100/250 (40%), Gaps = 51/250 (20%)
Query: 186 EHSVAVAEDGELYGWGWGRYGNLGLGD-------RNDRLIPEKVATVDREKMVMVACGWR 238
+H + +++ WG G LGLG + RL P D K++ A G
Sbjct: 20 KHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNP--FLPRDEAKIISFAVGGM 77
Query: 239 HTISVSSSGRLYSYGWSKYGQLGH--GDFKDHL---------------------VPCQLE 275
HT+++ ++S+G + G LG + K+ L P ++
Sbjct: 78 HTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIP 137
Query: 276 ALRESF--------ISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCS----- 322
RESF + Q++ + A+ S+G++Y WG + + +G D
Sbjct: 138 --RESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTP 195
Query: 323 ---PVQVKFPLDQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSL 379
P K+ + Q++ G H L + E VF+WG G QLG + +R K ++P
Sbjct: 196 WKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGR-KVMERFRLKTLDPRPF 254
Query: 380 DGSKGQNIAS 389
+ IAS
Sbjct: 255 GLRHVKYIAS 264
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 280 SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVG---DNVDHCSPVQVKF-PLDQ--- 332
S I ++H ++ WG ++G+G N + P F P D+
Sbjct: 10 SHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKI 69
Query: 333 --ISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPK 372
+ G HTLA+ E NV+SWG G LG S+ + K
Sbjct: 70 ISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLK 111
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 49/244 (20%)
Query: 110 SDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQK 169
++L L + A V IA G+ H LA+ +GEV +WG N++GQ + VP +
Sbjct: 51 ANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQ--------TTVPAE 101
Query: 170 LQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREK 229
++ + +AAGA S A+ +DG++ WG D +D + + +
Sbjct: 102 ARS----GVDAIAAGAWASYAL-KDGKVIAWG----------DDSDG---QTTVPAEAQS 143
Query: 230 MVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW 289
V G +T +G + ++G + +GQ VP + +S + ++GG
Sbjct: 144 GVTALDGGVYTALAVKNGGVIAWGDNYFGQT--------TVPAE----AQSGVDDVAGGI 191
Query: 290 RHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNV 349
H++A+ DGK+ WG N++ Q V P + + I+ G ++LA+ + V
Sbjct: 192 FHSLAL-KDGKVIAWGDNRYKQTTV--------PTEALSGVSAIASGEWYSLAL-KNGKV 241
Query: 350 FSWG 353
+WG
Sbjct: 242 IAWG 245
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 97/228 (42%), Gaps = 49/228 (21%)
Query: 126 VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA 185
V IA G H LA+ G+V WG N NGQL +P Q+ + +AAG
Sbjct: 28 VDAIAGGYFHGLALK-GGKVLGWGANLNGQL--------TMPAATQS----GVDAIAAGN 74
Query: 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSS 245
HS+A+ +DGE+ WG GN + +P + R + +
Sbjct: 75 YHSLAL-KDGEVIAWG----GN----EDGQTTVPAEA---------------RSGVDAIA 110
Query: 246 SGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWG 305
+G SY + GD D EA +S ++ + GG +AV +G + WG
Sbjct: 111 AGAWASYALKDGKVIAWGDDSDGQTTVPAEA--QSGVTALDGGVYTALAV-KNGGVIAWG 167
Query: 306 WNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWG 353
N FGQ V P + + +D ++ G H+LA+ + + V +WG
Sbjct: 168 DNYFGQTTV--------PAEAQSGVDDVAGGIFHSLALKDGK-VIAWG 206
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 80/182 (43%), Gaps = 41/182 (22%)
Query: 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHT 83
I+AG HS+AL G ++ WG EDGQ T + A + ++ GA
Sbjct: 70 IAAGNYHSLALKDGEVIA-WGGNEDGQ------------TTVPAEARSGVDAIAAGA--W 114
Query: 84 TAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEG 143
+Y+ +V +W G+ SD T +P +A V + G LAV G
Sbjct: 115 ASYALKDGKVIAW----------GDDSDGQTTVPAEAQSG--VTALDGGVYTALAVK-NG 161
Query: 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWG 203
V +WG N GQ + VP + Q+ + VA G HS+A+ +DG++ WG
Sbjct: 162 GVIAWGDNYFGQ--------TTVPAEAQS----GVDDVAGGIFHSLAL-KDGKVIAWGDN 208
Query: 204 RY 205
RY
Sbjct: 209 RY 210
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 49/244 (20%)
Query: 110 SDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQK 169
++L L + A V IA G+ H LA+ +GEV +WG N++GQ + VP +
Sbjct: 49 ANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQ--------TTVPAE 99
Query: 170 LQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREK 229
++ + +AAGA S A+ +DG++ WG D +D + + +
Sbjct: 100 ARS----GVDAIAAGAWASYAL-KDGKVIAWG----------DDSDG---QTTVPAEAQS 141
Query: 230 MVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW 289
V G +T +G + ++G + +GQ VP + +S + ++GG
Sbjct: 142 GVTALDGGVYTALAVKNGGVIAWGDNYFGQT--------TVPAE----AQSGVDDVAGGI 189
Query: 290 RHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNV 349
H++A+ DGK+ WG N++ Q V P + + I+ G ++LA+ + V
Sbjct: 190 FHSLAL-KDGKVIAWGDNRYKQTTV--------PTEALSGVSAIASGEWYSLAL-KNGKV 239
Query: 350 FSWG 353
+WG
Sbjct: 240 IAWG 243
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 97/228 (42%), Gaps = 49/228 (21%)
Query: 126 VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA 185
V IA G H LA+ G+V WG N NGQL +P Q+ + +AAG
Sbjct: 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQL--------TMPAATQS----GVDAIAAGN 72
Query: 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSS 245
HS+A+ +DGE+ WG GN + +P + R + +
Sbjct: 73 YHSLAL-KDGEVIAWG----GN----EDGQTTVPAEA---------------RSGVDAIA 108
Query: 246 SGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWG 305
+G SY + GD D EA +S ++ + GG +AV +G + WG
Sbjct: 109 AGAWASYALKDGKVIAWGDDSDGQTTVPAEA--QSGVTALDGGVYTALAV-KNGGVIAWG 165
Query: 306 WNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWG 353
N FGQ V P + + +D ++ G H+LA+ + + V +WG
Sbjct: 166 DNYFGQTTV--------PAEAQSGVDDVAGGIFHSLALKDGK-VIAWG 204
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 80/182 (43%), Gaps = 41/182 (22%)
Query: 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHT 83
I+AG HS+AL G ++ WG EDGQ T + A + ++ GA
Sbjct: 68 IAAGNYHSLALKDGEVIA-WGGNEDGQ------------TTVPAEARSGVDAIAAGA--W 112
Query: 84 TAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEG 143
+Y+ +V +W G+ SD T +P +A V + G LAV G
Sbjct: 113 ASYALKDGKVIAW----------GDDSDGQTTVPAEAQSG--VTALDGGVYTALAVK-NG 159
Query: 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWG 203
V +WG N GQ + VP + Q+ + VA G HS+A+ +DG++ WG
Sbjct: 160 GVIAWGDNYFGQ--------TTVPAEAQS----GVDDVAGGIFHSLAL-KDGKVIAWGDN 206
Query: 204 RY 205
RY
Sbjct: 207 RY 208
>pdb|3GYX|A Chain A, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|C Chain C, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|E Chain E, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|G Chain G, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|I Chain I, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|K Chain K, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
Length = 662
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 377 LSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPD 412
L LD SK + +SKYDP+ +T + Y ++PD
Sbjct: 627 LGLDDSKWKCFVNSKYDPAKKETKIFKKPYYQIIPD 662
>pdb|1WMR|A Chain A, Crystal Structure Of Isopullulanase From Aspergillus Niger
Atcc 9642
pdb|1WMR|B Chain B, Crystal Structure Of Isopullulanase From Aspergillus Niger
Atcc 9642
pdb|1X0C|A Chain A, Improved Crystal Structure Of Isopullulanase From
Aspergillus Niger Atcc 9642
pdb|1X0C|B Chain B, Improved Crystal Structure Of Isopullulanase From
Aspergillus Niger Atcc 9642
pdb|2Z8G|A Chain A, Aspergillus Niger Atcc9642 Isopullulanase Complexed With
Isopanose
pdb|2Z8G|B Chain B, Aspergillus Niger Atcc9642 Isopullulanase Complexed With
Isopanose
Length = 549
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 61 SPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKA 120
+P A++ + ++H+T S M V + W +F G+SS LF PI+
Sbjct: 413 NPGIFGAVNNYLYAPDGLSSNHSTG--NSNMTVRNITWSNF--RAEGSSSALFRINPIQN 468
Query: 121 LHSLRVKQIACGDSHCLAV-TVEGEVQSWGRNQNGQ 155
L ++ +K ++ L++ T E + W NG+
Sbjct: 469 LDNISIKNVSIESFEPLSINTTESWMPVWYDLNNGK 504
>pdb|4GBF|A Chain A, Crystal Structure Of The C-Terminal Domain Of Gp131 From
Bacteriophage Phikz
pdb|4GBF|B Chain B, Crystal Structure Of The C-Terminal Domain Of Gp131 From
Bacteriophage Phikz
Length = 400
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 282 ISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTL 341
I +SG + H + DG++ +G N GQ V D+ P Q++ G T+
Sbjct: 311 IGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHAG---------PYIQLAAGHNFTV 361
Query: 342 AVTERQNVFSWGRGTNGQL 360
V V WG + L
Sbjct: 362 TVNTLNQVMFWGDSPDNSL 380
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,294,891
Number of Sequences: 62578
Number of extensions: 642861
Number of successful extensions: 1537
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1238
Number of HSP's gapped (non-prelim): 46
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)