Query 013457
Match_columns 442
No_of_seqs 482 out of 2346
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:02:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 7.7E-53 1.7E-57 399.6 28.1 354 26-381 56-446 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 3.1E-47 6.8E-52 361.4 27.9 306 19-328 104-441 (476)
3 KOG1427 Uncharacterized conser 100.0 8.1E-44 1.8E-48 317.4 17.6 319 20-346 57-399 (443)
4 KOG1427 Uncharacterized conser 100.0 3.9E-41 8.4E-46 300.3 18.2 335 36-378 18-379 (443)
5 KOG0783 Uncharacterized conser 100.0 4.3E-28 9.4E-33 241.2 15.0 302 32-347 136-450 (1267)
6 KOG0783 Uncharacterized conser 99.9 1.9E-25 4E-30 222.6 13.3 266 85-356 137-417 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 1.2E-21 2.7E-26 202.3 22.9 280 18-316 524-855 (3738)
8 KOG1428 Inhibitor of type V ad 99.9 1.3E-21 2.8E-26 202.2 20.6 323 19-364 479-855 (3738)
9 PF00415 RCC1: Regulator of ch 99.2 1.2E-11 2.5E-16 85.3 5.0 50 37-86 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 1.7E-11 3.6E-16 84.5 5.6 50 194-243 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.1 1.2E-10 2.5E-15 70.1 4.4 30 178-207 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.1 1.4E-10 3E-15 69.8 4.7 30 21-50 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.1 1.2E-12 2.6E-17 133.2 -7.2 151 115-310 5-156 (850)
14 KOG0941 E3 ubiquitin protein l 99.0 5.4E-12 1.2E-16 128.5 -7.3 175 19-197 14-199 (850)
15 PF11725 AvrE: Pathogenicity f 96.0 0.097 2.1E-06 59.0 13.0 283 18-347 488-815 (1774)
16 KOG3669 Uncharacterized conser 94.2 3.2 6.9E-05 42.3 16.4 70 125-200 228-299 (705)
17 KOG0315 G-protein beta subunit 92.1 9.4 0.0002 35.0 20.9 154 125-306 85-244 (311)
18 COG4257 Vgb Streptogramin lyas 91.0 13 0.00029 34.6 15.6 233 27-312 62-302 (353)
19 PF11725 AvrE: Pathogenicity f 90.4 1.4 3E-05 50.3 9.3 116 169-299 696-815 (1774)
20 KOG3669 Uncharacterized conser 89.4 17 0.00036 37.3 15.0 70 72-148 228-299 (705)
21 KOG0943 Predicted ubiquitin-pr 88.5 0.072 1.6E-06 57.7 -2.0 129 227-359 373-509 (3015)
22 KOG0291 WD40-repeat-containing 84.9 58 0.0013 34.7 25.3 240 21-314 300-557 (893)
23 KOG4693 Uncharacterized conser 82.4 42 0.00092 31.2 15.2 18 132-150 130-147 (392)
24 KOG0943 Predicted ubiquitin-pr 81.6 0.1 2.2E-06 56.6 -4.6 130 18-152 373-506 (3015)
25 KOG1900 Nuclear pore complex, 81.0 84 0.0018 35.8 16.6 204 32-254 93-339 (1311)
26 TIGR01063 gyrA DNA gyrase, A s 78.7 1.1E+02 0.0024 33.7 22.3 219 19-255 535-769 (800)
27 KOG0646 WD40 repeat protein [G 78.2 78 0.0017 31.7 16.9 113 20-149 125-245 (476)
28 TIGR03300 assembly_YfgL outer 77.4 48 0.001 32.6 12.9 15 290-304 362-376 (377)
29 KOG1900 Nuclear pore complex, 77.3 78 0.0017 36.0 15.0 161 84-261 93-278 (1311)
30 PF07569 Hira: TUP1-like enhan 74.8 19 0.0004 32.7 8.4 30 123-152 12-41 (219)
31 KOG0315 G-protein beta subunit 73.8 75 0.0016 29.3 19.4 164 14-202 4-196 (311)
32 TIGR01063 gyrA DNA gyrase, A s 72.7 1.6E+02 0.0034 32.6 21.7 165 78-254 544-717 (800)
33 PF07569 Hira: TUP1-like enhan 71.7 18 0.0004 32.8 7.6 32 15-46 9-40 (219)
34 COG4257 Vgb Streptogramin lyas 70.1 80 0.0017 29.7 11.1 99 29-149 106-206 (353)
35 PF04841 Vps16_N: Vps16, N-ter 69.2 1.3E+02 0.0028 30.2 19.0 70 19-97 81-153 (410)
36 smart00706 TECPR Beta propelle 69.1 11 0.00024 22.9 3.9 24 125-148 9-33 (35)
37 PRK14131 N-acetylneuraminic ac 66.4 1.4E+02 0.003 29.4 20.4 18 134-151 131-148 (376)
38 smart00706 TECPR Beta propelle 65.4 17 0.00036 22.0 4.2 24 177-200 9-33 (35)
39 PRK05560 DNA gyrase subunit A; 63.5 2.4E+02 0.0052 31.2 22.6 219 19-256 537-773 (805)
40 PHA02713 hypothetical protein; 58.6 2.4E+02 0.0052 29.6 15.1 13 139-151 395-407 (557)
41 PF04841 Vps16_N: Vps16, N-ter 58.4 2.1E+02 0.0045 28.8 19.6 71 71-150 81-154 (410)
42 cd00200 WD40 WD40 domain, foun 58.2 1.4E+02 0.0029 26.6 28.1 106 72-202 95-206 (289)
43 PF12341 DUF3639: Protein of u 56.9 33 0.00071 19.8 4.0 25 123-147 1-25 (27)
44 PHA03098 kelch-like protein; P 56.5 2.5E+02 0.0054 29.1 15.3 17 134-151 335-351 (534)
45 PRK05560 DNA gyrase subunit A; 54.6 3.4E+02 0.0073 30.1 22.1 164 77-253 545-719 (805)
46 PLN02153 epithiospecifier prot 54.2 2.1E+02 0.0046 27.6 24.0 17 134-151 130-146 (341)
47 KOG2106 Uncharacterized conser 53.9 2.6E+02 0.0057 28.6 21.4 57 71-147 247-303 (626)
48 TIGR03300 assembly_YfgL outer 53.8 2.2E+02 0.0048 27.8 23.0 54 290-352 321-376 (377)
49 KOG0278 Serine/threonine kinas 52.3 2E+02 0.0043 26.7 12.5 36 166-202 135-172 (334)
50 PF04762 IKI3: IKI3 family; I 51.7 4E+02 0.0086 30.1 20.2 47 291-355 593-639 (928)
51 TIGR01062 parC_Gneg DNA topois 50.7 3.7E+02 0.008 29.4 16.3 158 78-259 492-658 (735)
52 PF02239 Cytochrom_D1: Cytochr 50.7 2.6E+02 0.0056 27.6 14.8 157 125-314 28-198 (369)
53 KOG1408 WD40 repeat protein [F 50.1 3.6E+02 0.0078 29.1 14.5 100 24-150 138-248 (1080)
54 PF06739 SBBP: Beta-propeller 49.5 20 0.00044 22.4 2.6 18 186-203 15-32 (38)
55 KOG4441 Proteins containing BT 47.1 2.5E+02 0.0053 29.7 11.7 22 233-254 509-530 (571)
56 PF04762 IKI3: IKI3 family; I 46.2 4.8E+02 0.01 29.4 22.1 31 16-46 424-456 (928)
57 PHA03098 kelch-like protein; P 45.2 3.7E+02 0.008 27.8 17.5 15 32-46 289-303 (534)
58 KOG1240 Protein kinase contain 44.5 4.3E+02 0.0093 30.4 13.0 163 125-304 1050-1222(1431)
59 PHA02713 hypothetical protein; 42.9 4.2E+02 0.0091 27.8 15.3 17 186-203 344-360 (557)
60 cd00200 WD40 WD40 domain, foun 42.4 2.4E+02 0.0052 24.9 32.9 147 19-202 10-164 (289)
61 KOG0316 Conserved WD40 repeat- 41.8 2.8E+02 0.0062 25.5 14.4 19 184-202 238-256 (307)
62 KOG0293 WD40 repeat-containing 41.4 3.8E+02 0.0081 26.8 15.8 26 282-307 443-470 (519)
63 TIGR01062 parC_Gneg DNA topois 40.9 5.2E+02 0.011 28.3 15.1 160 132-314 493-661 (735)
64 TIGR02658 TTQ_MADH_Hv methylam 40.6 3.7E+02 0.0079 26.4 15.2 73 126-201 40-123 (352)
65 KOG0646 WD40 repeat protein [G 40.1 4.1E+02 0.0089 26.8 18.0 97 72-186 83-185 (476)
66 KOG0289 mRNA splicing factor [ 39.8 2.9E+02 0.0063 27.7 9.9 133 1-148 318-457 (506)
67 PF02239 Cytochrom_D1: Cytochr 38.3 4E+02 0.0087 26.2 15.2 154 72-259 28-195 (369)
68 PLN03215 ascorbic acid mannose 36.8 1.5E+02 0.0033 29.3 7.6 62 125-201 161-225 (373)
69 PF07250 Glyoxal_oxid_N: Glyox 36.6 3.5E+02 0.0075 25.0 14.8 66 183-256 117-190 (243)
70 KOG0291 WD40-repeat-containing 33.9 6.5E+02 0.014 27.3 28.6 121 126-258 300-425 (893)
71 COG5308 NUP170 Nuclear pore co 33.3 7.2E+02 0.016 27.7 12.3 63 31-98 95-159 (1263)
72 PF13418 Kelch_4: Galactose ox 32.3 51 0.0011 21.4 2.6 18 28-45 3-20 (49)
73 smart00442 FGF Acidic and basi 30.8 3E+02 0.0064 22.5 9.3 65 177-251 3-67 (126)
74 PHA02790 Kelch-like protein; P 29.4 2.2E+02 0.0048 29.2 8.0 14 33-46 314-327 (480)
75 TIGR03548 mutarot_permut cycli 29.2 5.1E+02 0.011 24.7 13.8 17 134-151 116-132 (323)
76 KOG0278 Serine/threonine kinas 28.1 5E+02 0.011 24.2 11.1 82 61-156 135-218 (334)
77 KOG4441 Proteins containing BT 27.7 7.5E+02 0.016 26.1 12.7 23 284-306 508-530 (571)
78 KOG1034 Transcriptional repres 25.8 1.8E+02 0.0039 28.0 5.8 53 90-150 328-382 (385)
79 PF06433 Me-amine-dh_H: Methyl 25.4 3.3E+02 0.0071 26.6 7.7 154 180-353 32-211 (342)
80 PRK11138 outer membrane biogen 25.4 6.6E+02 0.014 24.7 14.4 136 28-200 256-391 (394)
81 TIGR02658 TTQ_MADH_Hv methylam 25.4 6.5E+02 0.014 24.7 24.4 115 182-307 202-318 (352)
82 PF09081 DUF1921: Domain of un 25.3 76 0.0017 20.8 2.3 18 79-96 33-50 (51)
83 cd00058 FGF Acidic and basic f 24.3 3.9E+02 0.0084 21.7 8.5 61 180-251 2-63 (123)
84 KOG1034 Transcriptional repres 24.2 1.7E+02 0.0038 28.1 5.4 57 32-97 323-381 (385)
85 PF01436 NHL: NHL repeat; Int 24.2 1.5E+02 0.0032 16.8 3.5 17 135-151 5-21 (28)
86 PF00167 FGF: Fibroblast growt 23.0 4E+02 0.0086 21.3 9.5 65 178-252 2-66 (122)
87 KOG2444 WD40 repeat protein [G 22.7 4.5E+02 0.0098 24.0 7.5 65 128-202 65-131 (238)
88 KOG2444 WD40 repeat protein [G 22.6 1.5E+02 0.0033 27.0 4.6 64 181-254 66-131 (238)
89 KOG0649 WD40 repeat protein [G 22.5 6.3E+02 0.014 23.5 18.7 47 123-170 62-109 (325)
90 PF03785 Peptidase_C25_C: Pept 22.4 1.5E+02 0.0032 22.2 3.7 34 123-156 15-49 (81)
91 PLN03215 ascorbic acid mannose 21.7 3.5E+02 0.0077 26.8 7.3 61 73-149 162-225 (373)
92 KOG1275 PAB-dependent poly(A) 21.3 1.2E+03 0.026 26.2 12.0 34 332-365 319-352 (1118)
93 PF03785 Peptidase_C25_C: Pept 21.2 1.4E+02 0.0031 22.3 3.4 32 177-208 17-49 (81)
94 PRK13979 DNA topoisomerase IV 20.9 1.3E+03 0.027 26.3 27.3 130 18-158 551-696 (957)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=7.7e-53 Score=399.61 Aligned_cols=354 Identities=31% Similarity=0.561 Sum_probs=291.6
Q ss_pred ecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCc-ccceeecCC--CCCcEEEEEccCCeeEEEEccCCeEEEEecCCCC
Q 013457 26 AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDR-LSPTQLSAL--DGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFG 102 (442)
Q Consensus 26 ~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~-~~P~~v~~~--~~~~i~~i~~G~~~~~~l~~~~G~vy~wG~n~~g 102 (442)
.-..|...++.-..||+||+|...|||++..+.. ..|++.+.+ +...|++++||+.|+++|++| |+||+||.|..|
T Consensus 56 ~~~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~D-g~lyswG~N~~G 134 (476)
T COG5184 56 IINKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHD-GNLYSWGDNDDG 134 (476)
T ss_pred hcccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCC-CCEEEeccCccc
Confidence 3456667888999999999999999999988765 899998877 567899999999999999999 999999999999
Q ss_pred ccCCCCC----------------CCceeeEEecc----cCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCC
Q 013457 103 RLGHGNS----------------SDLFTPLPIKA----LHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE 162 (442)
Q Consensus 103 qlG~~~~----------------~~~~~p~~v~~----~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~ 162 (442)
+||.... ....+|..+.. ....++++++||++++++|+++|+||+||....+.++.+...
T Consensus 135 ~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~ 214 (476)
T COG5184 135 ALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYK 214 (476)
T ss_pred ccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccc
Confidence 9998761 11345665555 234489999999999999999999999999888888877444
Q ss_pred Cccc----ceeeecccCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeC-CceEEEEEecC
Q 013457 163 DSLV----PQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVD-REKMVMVACGW 237 (442)
Q Consensus 163 ~~~~----p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~-~~~i~~I~~G~ 237 (442)
.+.. +.++... ...|+++++|.+|.++|+++|+||.||+|..||||.........+..+..+. -..|..|+||.
T Consensus 215 ~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~ 293 (476)
T COG5184 215 NSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGK 293 (476)
T ss_pred ccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCc
Confidence 3322 3333222 4579999999999999999999999999999999988776666555554332 23478899999
Q ss_pred ceEEEEeCCCCEEEEeCCCCCcCCCCCCC----CccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCCCcccc
Q 013457 238 RHTISVSSSGRLYSYGWSKYGQLGHGDFK----DHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVG 313 (442)
Q Consensus 238 ~~s~~lt~~G~vy~~G~n~~gqlG~~~~~----~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG 313 (442)
+|+++|+++|++|+||.|.+||||.+... ....|.....+....|..|++|..|+++|..+|.||+||++..+|||
T Consensus 294 ~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg 373 (476)
T COG5184 294 DHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLG 373 (476)
T ss_pred ceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCcccccc
Confidence 99999999999999999999999998321 23346666677777799999999999999999999999999999999
Q ss_pred cCC--CCCcccceEec--cCCCcEEecCceEEEEEcCCCEEEEeCCCCCCCCCCCC-CCCCCcEEeccCCCCC
Q 013457 314 VGD--NVDHCSPVQVK--FPLDQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGES-SDRNSPKIIEPLSLDG 381 (442)
Q Consensus 314 ~g~--~~~~~~p~~v~--~~~~~i~~G~~h~~alt~~g~v~~wG~n~~gqLG~g~~-~~~~~P~~i~~l~~~~ 381 (442)
..+ +.....|.++. ....+++||..|+++.+++|+||+||.|++||||.|+. .+...|+.|.+...++
T Consensus 374 ~~~~~~~~~~~~~~ls~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~ 446 (476)
T COG5184 374 IQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSG 446 (476)
T ss_pred CcccceeecCCccccccccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccCC
Confidence 988 55556666665 33459999999999999999999999999999999975 6778888887633333
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=3.1e-47 Score=361.43 Aligned_cols=306 Identities=31% Similarity=0.556 Sum_probs=255.5
Q ss_pred CCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCC----------------CCcccceeecC----CCCCcEEEEEc
Q 013457 19 RPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDA----------------EDRLSPTQLSA----LDGHEIVSVTC 78 (442)
Q Consensus 19 ~~i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~----------------~~~~~P~~v~~----~~~~~i~~i~~ 78 (442)
..|++++||..|+++|+.||.||+||.|..|+||.... +....|..|+. ....+|++++|
T Consensus 104 ~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~c 183 (476)
T COG5184 104 ASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLAC 183 (476)
T ss_pred eeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeec
Confidence 78999999999999999999999999999999998651 22567888876 22347999999
Q ss_pred cCCeeEEEEccCCeEEEEecCCCCccCCCCCCCce----eeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCC
Q 013457 79 GADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLF----TPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNG 154 (442)
Q Consensus 79 G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~----~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~g 154 (442)
|.+++++++++ |+||.||.+..+.++.+...+.. .+.|+... ...|+++++|.+|.++|+++|+||.||+|..|
T Consensus 184 g~e~svil~~~-G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkg 261 (476)
T COG5184 184 GWEISVILTAD-GRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKG 261 (476)
T ss_pred CCceEEEEccC-CcEEEecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCccc
Confidence 99999999999 99999999988888888554332 35555554 45899999999999999999999999999999
Q ss_pred CcCCCCCCCcccceeeecc-cCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCC----CeeeeeEeeeeCCce
Q 013457 155 QLGLGTTEDSLVPQKLQAF-EGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRN----DRLIPEKVATVDREK 229 (442)
Q Consensus 155 qlG~~~~~~~~~p~~v~~~-~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~----~~~~p~~v~~~~~~~ 229 (442)
|||.........+..+..+ .-..|+.|+||.+|+++|+++|+||+||.|.+||||..... ....|.....+....
T Consensus 262 qlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~ 341 (476)
T COG5184 262 QLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVT 341 (476)
T ss_pred ccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCce
Confidence 9999887765555544432 22347899999999999999999999999999999998321 223355555566677
Q ss_pred EEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCC--CCCccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecC
Q 013457 230 MVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGD--FKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWN 307 (442)
Q Consensus 230 i~~I~~G~~~s~~lt~~G~vy~~G~n~~gqlG~~~--~~~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n 307 (442)
|..|++|..|+++|..+|.||+||++..+|||..+ ......|+++..... +.+++||..|+++.+++|+||.||++
T Consensus 342 i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~~--~~~v~~gt~~~~~~t~~gsvy~wG~g 419 (476)
T COG5184 342 ICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIK--LEQVACGTHHNIARTDDGSVYSWGWG 419 (476)
T ss_pred EEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCccccccccc--eEEEEecCccceeeccCCceEEecCc
Confidence 99999999999999999999999999999999998 555666666665555 99999999999999999999999999
Q ss_pred CCcccccCCCCC-cccceEecc
Q 013457 308 KFGQVGVGDNVD-HCSPVQVKF 328 (442)
Q Consensus 308 ~~GqLG~g~~~~-~~~p~~v~~ 328 (442)
++|+||+++... ...|+.++.
T Consensus 420 e~gnlG~g~~~~~~~~pt~i~~ 441 (476)
T COG5184 420 EHGNLGNGPKEADVLVPTLIRQ 441 (476)
T ss_pred hhhhccCCchhhhccccccccc
Confidence 999999988655 466776663
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=8.1e-44 Score=317.39 Aligned_cols=319 Identities=29% Similarity=0.571 Sum_probs=272.5
Q ss_pred CEEEEEec--CCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCCeeEEEEccCCeEEEEe
Q 013457 20 PVLLISAG--ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWG 97 (442)
Q Consensus 20 ~i~~is~G--~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G~vy~wG 97 (442)
+|..|+.| ..|+++|+-+|++|.||+|..||||+++...+..|+.|+.|...+|++-+||++|+++|+++ |+||.||
T Consensus 57 ~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdt-G~v~afG 135 (443)
T KOG1427|consen 57 NIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDT-GQVLAFG 135 (443)
T ss_pred eEEEEecccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecC-CcEEEec
Confidence 56667766 68999999999999999999999999998999999999999999999999999999999999 9999999
Q ss_pred cCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCC--------------
Q 013457 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTED-------------- 163 (442)
Q Consensus 98 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~-------------- 163 (442)
+|.+||||.++........++....+..|+.|+||.++++.|+..+.+..+|...+||||+++...
T Consensus 136 eNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~ 215 (443)
T KOG1427|consen 136 ENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEA 215 (443)
T ss_pred ccccccccccccccccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeec
Confidence 999999999987554444444444566899999999999999999999999999999999987542
Q ss_pred cccceeeecccCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeC--CceEEEEEecCceEE
Q 013457 164 SLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVD--REKMVMVACGWRHTI 241 (442)
Q Consensus 164 ~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~--~~~i~~I~~G~~~s~ 241 (442)
+..|..+..+.+..|++++||.+|+++++++++||+||.+-||.||+....+...|..+..++ +.--.++.||+..++
T Consensus 216 ~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl 295 (443)
T KOG1427|consen 216 QPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSL 295 (443)
T ss_pred CCCccccccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccce
Confidence 345677788889999999999999999999999999999999999999999999998887665 334567899999999
Q ss_pred EEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCCCcccccCCCCC--
Q 013457 242 SVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVD-- 319 (442)
Q Consensus 242 ~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~-- 319 (442)
.+.+-|.+|.||.+... -.+...|.++..+.+-.+..|.++..|.+ +..|..+..||...+|.++-+.+..
T Consensus 296 ~v~e~G~Lf~~g~~k~~------ge~~mypkP~~dlsgwnl~~~~~~~~h~~-v~ad~s~i~wg~~~~g~~lggp~~Qks 368 (443)
T KOG1427|consen 296 NVAEGGQLFMWGKIKNN------GEDWMYPKPMMDLSGWNLRWMDSGSMHHF-VGADSSCISWGHAQYGELLGGPNGQKS 368 (443)
T ss_pred eecccceeEEeeccccC------cccccCCCchhhcCCccCCCcCccceeee-ecccccccccccccccccccCcccccc
Confidence 99999999999986532 24566788888888888999999988866 4567789999998887765554333
Q ss_pred cccceEeccCCC----cEEecCceEEEEEcC
Q 013457 320 HCSPVQVKFPLD----QISCGWRHTLAVTER 346 (442)
Q Consensus 320 ~~~p~~v~~~~~----~i~~G~~h~~alt~~ 346 (442)
+..|..++.+.. .|++|..|+++|.++
T Consensus 369 s~~Pk~v~~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 369 SAAPKKVDMLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred ccCccccchhcceeccceeeccceEEEEEcc
Confidence 356766665433 899999999999765
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=3.9e-41 Score=300.26 Aligned_cols=335 Identities=29% Similarity=0.497 Sum_probs=275.3
Q ss_pred eCCeEEEEeCCCCCccCCCCC---CCcccceeecCCCCCcEEEEEcc--CCeeEEEEccCCeEEEEecCCCCccCCCCCC
Q 013457 36 SGNIVCSWGRGEDGQLGHGDA---EDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQVYSWGWGDFGRLGHGNSS 110 (442)
Q Consensus 36 ~~g~v~~wG~n~~gqLG~g~~---~~~~~P~~v~~~~~~~i~~i~~G--~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~ 110 (442)
..|++..+|.-...+.|.-+. .+...|.++..+.+.+|+-|+.| ..|+++|+-+ |+.|.||.|..||||+++..
T Consensus 18 ~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~me-gk~~~wGRNekGQLGhgD~k 96 (443)
T KOG1427|consen 18 KGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDME-GKCYTWGRNEKGQLGHGDMK 96 (443)
T ss_pred CCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecc-cceeecccCccCccCccchh
Confidence 346666677655555554332 25678999999999999999866 5799999999 99999999999999999988
Q ss_pred CceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCCeEEE
Q 013457 111 DLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVA 190 (442)
Q Consensus 111 ~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~ 190 (442)
....|+.+..|...+|++.+||++|+++||++|.||.||.|.+||||.+..........+....+..|+.|+||.++++.
T Consensus 97 ~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~ 176 (443)
T KOG1427|consen 97 QRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTVW 176 (443)
T ss_pred hccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCccccCccceeeccccceEEE
Confidence 88999999999999999999999999999999999999999999999998775544444444455689999999999999
Q ss_pred EecCCcEEEEeCCCCCCcCCCCCCC--------------eeeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEEEeCCC
Q 013457 191 VAEDGELYGWGWGRYGNLGLGDRND--------------RLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSK 256 (442)
Q Consensus 191 Lt~~G~vy~wG~n~~GqlG~~~~~~--------------~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~~G~n~ 256 (442)
|+..+.+.++|.-.|||||++.+.. +..|..+..+++..|++++||.+|+++++++++||+||.+.
T Consensus 177 l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGG 256 (443)
T KOG1427|consen 177 LSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGG 256 (443)
T ss_pred eecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEecccc
Confidence 9999999999999999999986522 23456677888899999999999999999999999999999
Q ss_pred CCcCCCCCCCCccceeEecccCC--CcEEEEEcCCCceEEEeCCCcEEEeecCCCcccccCCCCCcccceEeccCC----
Q 013457 257 YGQLGHGDFKDHLVPCQLEALRE--SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL---- 330 (442)
Q Consensus 257 ~gqlG~~~~~~~~~p~~v~~~~~--~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~---- 330 (442)
||+||+....+...|..++.+.. .--.++.||+..++++.+-|.+|.||.+.. +.++...|.++..+.
T Consensus 257 yGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl 330 (443)
T KOG1427|consen 257 YGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNL 330 (443)
T ss_pred ccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc------CcccccCCCchhhcCCccC
Confidence 99999999999999988886653 335679999999999999999999998864 222334444444332
Q ss_pred CcEEecCceEEEEEcCCCEEEEeCCCCCCCCCCCC--CCCCCcEEeccCC
Q 013457 331 DQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGES--SDRNSPKIIEPLS 378 (442)
Q Consensus 331 ~~i~~G~~h~~alt~~g~v~~wG~n~~gqLG~g~~--~~~~~P~~i~~l~ 378 (442)
..+-|+..|.++ ..|.....||...+|.++-|.. .....|..++-|.
T Consensus 331 ~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~ 379 (443)
T KOG1427|consen 331 RWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLE 379 (443)
T ss_pred CCcCccceeeee-cccccccccccccccccccCccccccccCccccchhc
Confidence 378899887654 5667899999988777765543 5667888877664
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.95 E-value=4.3e-28 Score=241.24 Aligned_cols=302 Identities=26% Similarity=0.393 Sum_probs=231.0
Q ss_pred EEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCC--CcEEEEEccCCeeEEEEccCCeEEEEecCCCCccCCCCC
Q 013457 32 VALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDG--HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNS 109 (442)
Q Consensus 32 ~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~--~~i~~i~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~ 109 (442)
.+++.-..||.||.|.+..||+|.-.....|.+|..|.. .-+.+|+.+..|++++++. |+||++|.+..|+||+++.
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~k-gqvY~cGhG~GGRlG~gde 214 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEK-GQVYVCGHGAGGRLGFGDE 214 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCC-CcEEEeccCCCCccCcCcc
Confidence 356677899999999999999999999999999987753 4578899999999999999 9999999999999999999
Q ss_pred CCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCC-cccceeeecc--cCC-cEEEEEeCC
Q 013457 110 SDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTED-SLVPQKLQAF--EGV-SIKMVAAGA 185 (442)
Q Consensus 110 ~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~-~~~p~~v~~~--~~~-~i~~ia~G~ 185 (442)
...+.|..++.+.+.+|.+|+....|+++||++|-||+||.|..+|||..+... ...|.+|... .+. .|+-|++|.
T Consensus 215 q~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~ 294 (1267)
T KOG0783|consen 215 QYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGK 294 (1267)
T ss_pred cccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhccc
Confidence 999999999999999999999999999999999999999999999999876552 3345544432 222 689999999
Q ss_pred CeEEEEecCCcEEEEeCCCCCCcCCCCCCCe-eeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCC
Q 013457 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRNDR-LIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGD 264 (442)
Q Consensus 186 ~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~-~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~~G~n~~gqlG~~~ 264 (442)
.|+++-| +-.||+||.|. ||||+.++... ..|..+.. ....|..++|....++++++++.+|++-+ |.|.-...
T Consensus 295 ~hsVawt-~~~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~~ad--y~~~k~~~ 369 (1267)
T KOG0783|consen 295 SHSVAWT-DTDVYSWGLNN-GQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIAFAD--YNQVKLPF 369 (1267)
T ss_pred ceeeeee-cceEEEecccC-ceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEEEec--ccceecCc
Confidence 9999999 55799999985 99998877443 34655532 23578899999999999999999999874 33322211
Q ss_pred CCCccceeEecc----cCCCcEEEEEcCCCceEEEeCCCcEEEeecCCCcccccCCCCCc--ccceEeccCCCcEEecCc
Q 013457 265 FKDHLVPCQLEA----LRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDH--CSPVQVKFPLDQISCGWR 338 (442)
Q Consensus 265 ~~~~~~p~~v~~----~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~--~~p~~v~~~~~~i~~G~~ 338 (442)
........+|.. +....+++..+.....+++|+-|+||.|-.+.. .... ..|..+. .+.+|+--.+
T Consensus 370 n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns-------~~~~c~ftp~r~~-~isdIa~~~N 441 (1267)
T KOG0783|consen 370 NVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNS-------TRTSCKFTPLRIF-EISDIAWTAN 441 (1267)
T ss_pred chhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCC-------ceeeeecccceee-ehhhhhhccc
Confidence 111111111110 011225566666777889999999999986542 1111 2333332 2337777778
Q ss_pred eEEEEEcCC
Q 013457 339 HTLAVTERQ 347 (442)
Q Consensus 339 h~~alt~~g 347 (442)
..+++++||
T Consensus 442 ~~~~~t~dG 450 (1267)
T KOG0783|consen 442 SLILCTRDG 450 (1267)
T ss_pred eEEEEecCc
Confidence 899999999
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=1.9e-25 Score=222.63 Aligned_cols=266 Identities=22% Similarity=0.380 Sum_probs=207.1
Q ss_pred EEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccC--CCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCC
Q 013457 85 AYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALH--SLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE 162 (442)
Q Consensus 85 ~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~ 162 (442)
+++.. .+||.||.|....||+++..+...|..+..+. +.-+.+|+.+..|+++|++.|+||++|...-|.||+++..
T Consensus 137 ~~d~p-ndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq 215 (1267)
T KOG0783|consen 137 VLDLP-NDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQ 215 (1267)
T ss_pred ccCCc-cceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccc
Confidence 34444 89999999999999999999999999988774 4457889999999999999999999999999999999988
Q ss_pred CcccceeeecccCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCC-eeeeeEeeeeC--C-ceEEEEEecCc
Q 013457 163 DSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND-RLIPEKVATVD--R-EKMVMVACGWR 238 (442)
Q Consensus 163 ~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~-~~~p~~v~~~~--~-~~i~~I~~G~~ 238 (442)
....|+.++.+.+.+|.+|+....|+++||++|.||+||.|.++|||+.+... ...|.+|.... + ..|+.|++|..
T Consensus 216 ~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~ 295 (1267)
T KOG0783|consen 216 YNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKS 295 (1267)
T ss_pred ccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccc
Confidence 88999999999999999999999999999999999999999999999876533 33455543221 2 37899999999
Q ss_pred eEEEEeCCCCEEEEeCCCCCcCCCCCCCC-ccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCCCcccccCCC
Q 013457 239 HTISVSSSGRLYSYGWSKYGQLGHGDFKD-HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDN 317 (442)
Q Consensus 239 ~s~~lt~~G~vy~~G~n~~gqlG~~~~~~-~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG~g~~ 317 (442)
|+++-++ -.||+||.| .||||..+... ...|..+..+ ...|.-+.|...-++++++++.+|++-+-..--+ ..+
T Consensus 296 hsVawt~-~~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~~-~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~--~~n 370 (1267)
T KOG0783|consen 296 HSVAWTD-TDVYSWGLN-NGQLGISDNISVVTTPRRLAGL-LSPVIHVVATTRATVCLLQNNSIIAFADYNQVKL--PFN 370 (1267)
T ss_pred eeeeeec-ceEEEeccc-CceecCCCCCceeecchhhccc-ccceEEEEecCccEEEEecCCcEEEEecccceec--Ccc
Confidence 9999976 479999986 59999876544 3456544322 2348889999999999999999999864332111 112
Q ss_pred CCcccceEeccC--------CCcEEecCceEEEEEcCCCEEEEeCCC
Q 013457 318 VDHCSPVQVKFP--------LDQISCGWRHTLAVTERQNVFSWGRGT 356 (442)
Q Consensus 318 ~~~~~p~~v~~~--------~~~i~~G~~h~~alt~~g~v~~wG~n~ 356 (442)
....+.+.|... ..+..+....-+++|+-|.||+|-.+.
T Consensus 371 ~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 371 VDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKN 417 (1267)
T ss_pred hhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCC
Confidence 222222222211 113444556678899999999998644
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.2e-21 Score=202.31 Aligned_cols=280 Identities=23% Similarity=0.297 Sum_probs=189.4
Q ss_pred CCCEEEEEecCCceEEEE--eCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCCeeEEEEccCCeEEE
Q 013457 18 FRPVLLISAGASHSVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYS 95 (442)
Q Consensus 18 ~~~i~~is~G~~~~~~l~--~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G~vy~ 95 (442)
+++|++|+.|-+..+++. .+|-++.-|+.. ....-+++......+|+.+.....---.+.++ |++|.
T Consensus 524 ~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k----------~~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSen-GkifM 592 (3738)
T KOG1428|consen 524 PEPIVQISVGIDTIMFRSGAGHGWIASVDDKK----------RNGRLRRLVPSNRRKIVHVCASGHVYGYVSEN-GKIFM 592 (3738)
T ss_pred CCceEEEEeccchhheeeccCcceEEeccCcc----------cccchhhcCCCCcceeEEEeeeeEEEEEEccC-CeEEe
Confidence 489999999988888877 455555444221 11112222223335788775444434456666 99999
Q ss_pred EecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCc-cccee-----
Q 013457 96 WGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDS-LVPQK----- 169 (442)
Q Consensus 96 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~-~~p~~----- 169 (442)
.|....- .....+.+..+.+..|.+++.|..|.++++.+|.||.||.|+.+|+|.-..... ..|..
T Consensus 593 ~G~~tm~--------~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e 664 (3738)
T KOG1428|consen 593 GGLHTMR--------VNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQE 664 (3738)
T ss_pred ecceeEE--------ecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCccccccee
Confidence 9863210 111234566788889999999999999999999999999999999997443211 11110
Q ss_pred --------eecccCCcEEEEEeCCCeEEEE------ecCCcEEEEeCCCCCCcCC--------CCC--------------
Q 013457 170 --------LQAFEGVSIKMVAAGAEHSVAV------AEDGELYGWGWGRYGNLGL--------GDR-------------- 213 (442)
Q Consensus 170 --------v~~~~~~~i~~ia~G~~h~~~L------t~~G~vy~wG~n~~GqlG~--------~~~-------------- 213 (442)
-+.+.+..-+...||.-...-+ .-.|.+.-+|.++.+.+-. ..+
T Consensus 665 ~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~s 744 (3738)
T KOG1428|consen 665 YQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSS 744 (3738)
T ss_pred ecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecc
Confidence 1111222222233332211110 1245556666555433211 110
Q ss_pred -----CCeeeeeEeeee---CCceEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEE
Q 013457 214 -----NDRLIPEKVATV---DREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQI 285 (442)
Q Consensus 214 -----~~~~~p~~v~~~---~~~~i~~I~~G~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I 285 (442)
....-|.++..- ...++++|+||..|++.|.++++||+||+|.+||||.++......|+++..+++..+++|
T Consensus 745 taa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQV 824 (3738)
T KOG1428|consen 745 TAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQV 824 (3738)
T ss_pred cccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEE
Confidence 011123333221 246899999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCceEEEeCCCcEEEeecCCCcccccCC
Q 013457 286 SGGWRHTMAVTSDGKLYGWGWNKFGQVGVGD 316 (442)
Q Consensus 286 ~~G~~hs~~lt~~G~vy~wG~n~~GqLG~g~ 316 (442)
++|.+|++++..||.||.+|.-..|||+..-
T Consensus 825 aAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~ 855 (3738)
T KOG1428|consen 825 AAGSNHTILRANDGSVFTFGAFGKGQLARPA 855 (3738)
T ss_pred ecCCCceEEEecCCcEEEeccccCccccCcc
Confidence 9999999999999999999999999999754
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.3e-21 Score=202.20 Aligned_cols=323 Identities=22% Similarity=0.315 Sum_probs=212.6
Q ss_pred CCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCCeeEEEEccCCeEEEEec
Q 013457 19 RPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGW 98 (442)
Q Consensus 19 ~~i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G~vy~wG~ 98 (442)
+.-+++-.++...++-+.+|+||.-|... .+|+-..-.......++ .+|++|+.|-+.+.|+.-. |+=|.+-.
T Consensus 479 ~qtv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~nWmEL~l~----~~IVq~SVG~D~~~~~~~A-~~G~I~~v 551 (3738)
T KOG1428|consen 479 PQTVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGNNWMELCLP----EPIVQISVGIDTIMFRSGA-GHGWIASV 551 (3738)
T ss_pred chheecccchhhhhhhhcCccEEEecCcc--EEeEEccCCceEEecCC----CceEEEEeccchhheeecc-CcceEEec
Confidence 34456677888888888999999888654 34443332222222111 4799999999988887755 44343322
Q ss_pred CCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcE
Q 013457 99 GDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSI 178 (442)
Q Consensus 99 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i 178 (442)
.+.-..| .-......+..+|+.+.+...---.++++|++|..|..... .....+.+..+++.-|
T Consensus 552 ~D~k~~~--------~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~~~i 615 (3738)
T KOG1428|consen 552 DDKKRNG--------RLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDNVMI 615 (3738)
T ss_pred cCccccc--------chhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhcccccee
Confidence 2111111 11122222344777776655444578999999999854310 1112345667888899
Q ss_pred EEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeee-eeEe-------------eeeCCceEEEEEecCceEEE--
Q 013457 179 KMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLI-PEKV-------------ATVDREKMVMVACGWRHTIS-- 242 (442)
Q Consensus 179 ~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~-p~~v-------------~~~~~~~i~~I~~G~~~s~~-- 242 (442)
.+++.|..|.++++++|.||+||-|..+|+|...+..... |..- ..+.....+-..||.....-
T Consensus 616 sslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~Gva 695 (3738)
T KOG1428|consen 616 SSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVA 695 (3738)
T ss_pred ehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccc
Confidence 9999999999999999999999999999999865533221 2110 01111112222333221110
Q ss_pred ----EeCCCCEEEEeCCCCCcCCCCC--------------------CCC-------ccceeEec---ccCCCcEEEEEcC
Q 013457 243 ----VSSSGRLYSYGWSKYGQLGHGD--------------------FKD-------HLVPCQLE---ALRESFISQISGG 288 (442)
Q Consensus 243 ----lt~~G~vy~~G~n~~gqlG~~~--------------------~~~-------~~~p~~v~---~~~~~~i~~I~~G 288 (442)
-.-.|.+..+|.++.+.+--+- +.. ..-|..+. ...+.++.+|+||
T Consensus 696 C~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG 775 (3738)
T KOG1428|consen 696 CGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCG 775 (3738)
T ss_pred cccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEecc
Confidence 1234556666665544332110 000 11233332 2234568999999
Q ss_pred CCceEEEeCCCcEEEeecCCCcccccCCCCCcccceEeccCCC----cEEecCceEEEEEcCCCEEEEeCCCCCCCCCCC
Q 013457 289 WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLD----QISCGWRHTLAVTERQNVFSWGRGTNGQLGHGE 364 (442)
Q Consensus 289 ~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~----~i~~G~~h~~alt~~g~v~~wG~n~~gqLG~g~ 364 (442)
..|+++|.+|++||.+|+|.+||||.|+......|++|..+.. +|++|++|++++..||+||++|.-..|||+..-
T Consensus 776 ~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~ 855 (3738)
T KOG1428|consen 776 NFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPA 855 (3738)
T ss_pred CceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCcc
Confidence 9999999999999999999999999999999999999987665 999999999999999999999999999999764
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.24 E-value=1.2e-11 Score=85.34 Aligned_cols=50 Identities=46% Similarity=0.787 Sum_probs=47.3
Q ss_pred CCeEEEEeCCCCCccC-CCCCCCcccceeecCCCCCcEEEEEccCCeeEEE
Q 013457 37 GNIVCSWGRGEDGQLG-HGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAY 86 (442)
Q Consensus 37 ~g~v~~wG~n~~gqLG-~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l 86 (442)
||+||+||.|.+|||| .+.......|+++..+.+.+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 7999999999999999 7778889999999999989999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.23 E-value=1.7e-11 Score=84.53 Aligned_cols=50 Identities=42% Similarity=0.852 Sum_probs=47.1
Q ss_pred CCcEEEEeCCCCCCcC-CCCCCCeeeeeEeeeeCCceEEEEEecCceEEEE
Q 013457 194 DGELYGWGWGRYGNLG-LGDRNDRLIPEKVATVDREKMVMVACGWRHTISV 243 (442)
Q Consensus 194 ~G~vy~wG~n~~GqlG-~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~l 243 (442)
||+||+||.|.+|||| .........|+++..+...+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 7778888999999999999999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.11 E-value=1.2e-10 Score=70.07 Aligned_cols=30 Identities=40% Similarity=0.858 Sum_probs=26.1
Q ss_pred EEEEEeCCCeEEEEecCCcEEEEeCCCCCC
Q 013457 178 IKMVAAGAEHSVAVAEDGELYGWGWGRYGN 207 (442)
Q Consensus 178 i~~ia~G~~h~~~Lt~~G~vy~wG~n~~Gq 207 (442)
|++|+||.+|+++|+++|+||+||+|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.11 E-value=1.4e-10 Score=69.75 Aligned_cols=30 Identities=40% Similarity=0.648 Sum_probs=26.0
Q ss_pred EEEEEecCCceEEEEeCCeEEEEeCCCCCc
Q 013457 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQ 50 (442)
Q Consensus 21 i~~is~G~~~~~~l~~~g~v~~wG~n~~gq 50 (442)
|++|+||..|+++|+++|+||+||+|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.2e-12 Score=133.20 Aligned_cols=151 Identities=32% Similarity=0.591 Sum_probs=132.0
Q ss_pred eEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEecC
Q 013457 115 PLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAED 194 (442)
Q Consensus 115 p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~ 194 (442)
|..+..+.-.+|.+++||..|+++++..|++|+||.|.+||+|.+.......|..++.+.+.+..+|++|..|++++..
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~- 83 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS- 83 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh-
Confidence 3334445555799999999999999999999999999999999985554445999999999999999999999998884
Q ss_pred CcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEe
Q 013457 195 GELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQL 274 (442)
Q Consensus 195 G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v 274 (442)
|+++++++|.++.+|....+|+|+....+...|..+
T Consensus 84 --------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v 119 (850)
T KOG0941|consen 84 --------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLV 119 (850)
T ss_pred --------------------------------------------chhhcchhccccccCCcccccccccccccccccHHH
Confidence 999999999999999999999999777777788888
Q ss_pred cccCCCcEEEEEcCCCceEEEe-CCCcEEEeecCCCc
Q 013457 275 EALRESFISQISGGWRHTMAVT-SDGKLYGWGWNKFG 310 (442)
Q Consensus 275 ~~~~~~~i~~I~~G~~hs~~lt-~~G~vy~wG~n~~G 310 (442)
..+-...+++|+||..|++++. .-|++|..|.+..|
T Consensus 120 ~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 120 LELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred HHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 8777788999999999998875 46999999998877
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=5.4e-12 Score=128.49 Aligned_cols=175 Identities=27% Similarity=0.467 Sum_probs=136.0
Q ss_pred CCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCCeeEEEEc-------cCC
Q 013457 19 RPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSE-------SCM 91 (442)
Q Consensus 19 ~~i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~-------~~G 91 (442)
.+|++++||..|+++++..|.+++||.|.+||+|.+.......|.+++.+.+.+..+|++|.+|+++++. + |
T Consensus 14 k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e-~ 92 (850)
T KOG0941|consen 14 KHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDE-G 92 (850)
T ss_pred hhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchh-c
Confidence 4789999999999999999999999999999999985544334999999999999999999999988776 7 9
Q ss_pred eEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEc-CCeEEEEeCCCCCCcCCCCCCCcccceee
Q 013457 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTV-EGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (442)
Q Consensus 92 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~-~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 170 (442)
.++.+|....+|+|+........|..+..+-+..+.+|+|+..|+++.-. -|++|.+|.+..|. +.-.....+.+.
T Consensus 93 ~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk---~~i~s~s~~~~l 169 (850)
T KOG0941|consen 93 KVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGK---GVIVSLSGEDLL 169 (850)
T ss_pred cccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCC---ceeeccchhhhc
Confidence 99999999999999977777777888887778899999999999987654 59999999888761 000000011000
Q ss_pred e---cccCCcEEEEEeCCCeEEEEecCCcE
Q 013457 171 Q---AFEGVSIKMVAAGAEHSVAVAEDGEL 197 (442)
Q Consensus 171 ~---~~~~~~i~~ia~G~~h~~~Lt~~G~v 197 (442)
. ......+..+.+|.+.+..|...+.-
T Consensus 170 ~~~d~~~~~~~~~~~~g~dq~~~l~~~~~~ 199 (850)
T KOG0941|consen 170 RDHDSEKDHRCSLAFAGGDQTFSLSSKGEN 199 (850)
T ss_pred ccccHHHHHHHHHHhcCCCceEEEEeeccc
Confidence 0 01122345578888888888766543
No 15
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=95.97 E-value=0.097 Score=59.01 Aligned_cols=283 Identities=16% Similarity=0.225 Sum_probs=140.3
Q ss_pred CCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceee--------------cCC-CC-----CcEEEEE
Q 013457 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQL--------------SAL-DG-----HEIVSVT 77 (442)
Q Consensus 18 ~~~i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v--------------~~~-~~-----~~i~~i~ 77 (442)
.+...+|.-...+.++.+++|+||+-=... ....+......|... ..| .+ .-+++=.
T Consensus 488 ~a~A~~VgLs~drLFvADseGkLYsa~l~~---~~~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~ 564 (1774)
T PF11725_consen 488 KAQAQSVGLSNDRLFVADSEGKLYSADLPA---AQDNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDR 564 (1774)
T ss_pred chhhhheeecCCeEEEEeCCCCEEeccccc---ccCCCcceEeccccccccccccccccceeeccccCCCCeeeEEEecc
Confidence 345667777778899999999999432211 111111112222222 111 11 1134445
Q ss_pred ccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCcee---eEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCC
Q 013457 78 CGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFT---PLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNG 154 (442)
Q Consensus 78 ~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~---p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~g 154 (442)
.|..|+++|.++ +.=|.-|||-...|-..+..-... |.+.. .+-.|..-.++|. +|+|+.|-....+
T Consensus 565 ~GQ~Hs~aLde~-~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~--------~ldl~r~G~v~L~-~G~i~~wD~ttq~ 634 (1774)
T PF11725_consen 565 QGQRHSHALDEQ-GSQLQPGWNLSDALVLDNTRGLPKPPAPAPHE--------ILDLGRAGLVGLQ-DGKIQYWDSTTQC 634 (1774)
T ss_pred CCceeecccccc-CCccCCCCcccceeEeeccCCCCCCCCCChHH--------hhccccccceeec-cceEeeecCcchh
Confidence 677788888777 777777777665554433322221 22211 2234556677887 5999999765433
Q ss_pred CcCCCCCCCcccce----eeecccCCcEEE---------EEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeE
Q 013457 155 QLGLGTTEDSLVPQ----KLQAFEGVSIKM---------VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEK 221 (442)
Q Consensus 155 qlG~~~~~~~~~p~----~v~~~~~~~i~~---------ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~ 221 (442)
.-..+.......-. .-..|.+-+|+. |+-|.+|.++++.-..-+..| ..
T Consensus 635 W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G------------------~~ 696 (1774)
T PF11725_consen 635 WKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELG------------------DA 696 (1774)
T ss_pred hhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCC------------------cc
Confidence 22111100000000 000011112222 333333333333221111111 23
Q ss_pred eeeeCCceEEEEE-ecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCCce-EEEeCCC
Q 013457 222 VATVDREKMVMVA-CGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHT-MAVTSDG 299 (442)
Q Consensus 222 v~~~~~~~i~~I~-~G~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~hs-~~lt~~G 299 (442)
+..++...|..++ .+.++.++|++.|++-..= .- ....|...+.+++ .|++|+.-..|. +|++.+|
T Consensus 697 l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k~---------g~p~~l~~~gl~G-~ik~l~lD~~~nL~Alt~~G 764 (1774)
T PF11725_consen 697 LEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--KP---------GRPVPLSRPGLSG-EIKDLALDEKQNLYALTSTG 764 (1774)
T ss_pred ccCCCcCcceeEEEEcCCceEEeccCCcccccc--CC---------CCCccCCCCCCCc-chhheeeccccceeEecCCC
Confidence 4455555666554 4668999999999887642 11 1122222334444 489999987755 6889999
Q ss_pred cEEE-----eecCCCcccccCCCCCcccceEec--cCCCcEEecCceEEEEEcCC
Q 013457 300 KLYG-----WGWNKFGQVGVGDNVDHCSPVQVK--FPLDQISCGWRHTLAVTERQ 347 (442)
Q Consensus 300 ~vy~-----wG~n~~GqLG~g~~~~~~~p~~v~--~~~~~i~~G~~h~~alt~~g 347 (442)
+||. |=.+..+-.- .....|+..+ .+...+....+|.+.+.-++
T Consensus 765 ~Lf~~~k~~WQ~~~~~~~~----~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 765 ELFRLPKEAWQGNAEGDQM----AAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred ceeecCHHHhhCcccCCcc----ccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 9998 4434333110 1112222222 22336777777777666544
No 16
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.21 E-value=3.2 Score=42.25 Aligned_cols=70 Identities=27% Similarity=0.331 Sum_probs=50.3
Q ss_pred cEEEEEeCC-ceEEEEEcCCeEEE-EeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEecCCcEEEE
Q 013457 125 RVKQIACGD-SHCLAVTVEGEVQS-WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (442)
Q Consensus 125 ~i~~Ia~G~-~h~~~lt~~G~vy~-wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~w 200 (442)
.+.+|++|. ....+|+++|.||. -|-....+.|..=. +...|. ..+ .++.|+.|....-+||.+|++|.-
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-dI~tP~--~a~---~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-DIVTPR--QAL---EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh-hccCcc--ccc---ceEEEEeccceEEEEecCCcEEEE
Confidence 588999998 77889999999875 46555555554322 222222 221 289999999999999999999864
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=92.10 E-value=9.4 Score=34.96 Aligned_cols=154 Identities=15% Similarity=0.227 Sum_probs=75.7
Q ss_pred cEEEEEe--CCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEecCCcEEEEeC
Q 013457 125 RVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGW 202 (442)
Q Consensus 125 ~i~~Ia~--G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~ 202 (442)
+|..|.. -..-.+-=.+||.+-.|-.-. +.. +.........+-+-+.-...+.+.-+.+|.|++|-.
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~---~~~--------qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRS---LSC--------QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDL 153 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccC---ccc--------chhccCCCCcceEEecCCcceEEeecCCCcEEEEEc
Confidence 5555543 333333445788888886432 110 111111111122334445566677788999999963
Q ss_pred CCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCc--eEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCC
Q 013457 203 GRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWR--HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRES 280 (442)
Q Consensus 203 n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~--~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~ 280 (442)
.. ..-.....|+.. ..|.++....+ ...+.++.|++|+|-.-. ........|..--...+.
T Consensus 154 ~~------~~c~~~liPe~~-----~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~------~~~~s~l~P~~k~~ah~~ 216 (311)
T KOG0315|consen 154 GE------NSCTHELIPEDD-----TSIQSLTVMPDGSMLAAANNKGNCYVWRLLN------HQTASELEPVHKFQAHNG 216 (311)
T ss_pred cC------CccccccCCCCC-----cceeeEEEcCCCcEEEEecCCccEEEEEccC------CCccccceEhhheecccc
Confidence 22 111222333322 34555555544 556788999999997432 111222233211111122
Q ss_pred cEEE--EEcCCCceEEEeCCCcEEEeec
Q 013457 281 FISQ--ISGGWRHTMAVTSDGKLYGWGW 306 (442)
Q Consensus 281 ~i~~--I~~G~~hs~~lt~~G~vy~wG~ 306 (442)
.|.+ .+-...|......|-++++|-.
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEec
Confidence 2333 3334445555556777888854
No 18
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.03 E-value=13 Score=34.62 Aligned_cols=233 Identities=19% Similarity=0.198 Sum_probs=106.4
Q ss_pred cCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccC---CeeEEEEccCCeEEEEecC-CCC
Q 013457 27 GASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA---DHTTAYSESCMQVYSWGWG-DFG 102 (442)
Q Consensus 27 G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~---~~~~~l~~~~G~vy~wG~n-~~g 102 (442)
+.-|-++...||.|| ++..-.+.+|+=+... -.++.+..|. -|.+.+-.| |..|..-.. ..+
T Consensus 62 ~ap~dvapapdG~VW-ft~qg~gaiGhLdP~t------------Gev~~ypLg~Ga~Phgiv~gpd-g~~Witd~~~aI~ 127 (353)
T COG4257 62 SAPFDVAPAPDGAVW-FTAQGTGAIGHLDPAT------------GEVETYPLGSGASPHGIVVGPD-GSAWITDTGLAIG 127 (353)
T ss_pred CCccccccCCCCceE-EecCccccceecCCCC------------CceEEEecCCCCCCceEEECCC-CCeeEecCcceeE
Confidence 467888999999999 4444445555422111 1122222221 234444444 555555322 223
Q ss_pred ccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCC-CCCcCCCCCCCcccceeeecccCCcEEEE
Q 013457 103 RLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQ-NGQLGLGTTEDSLVPQKLQAFEGVSIKMV 181 (442)
Q Consensus 103 qlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~-~gqlG~~~~~~~~~p~~v~~~~~~~i~~i 181 (442)
+++..+-+....|.+ .+.+-+.-.+.+++.+|+||.-|.+- +|.|--.....+..|.+
T Consensus 128 R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------ 186 (353)
T COG4257 128 RLDPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------ 186 (353)
T ss_pred EecCcccceEEeecc---------cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------
Confidence 333222222222222 23333455688999999999988642 33332111111111111
Q ss_pred EeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEEEeCCCCCcCC
Q 013457 182 AAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLG 261 (442)
Q Consensus 182 a~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~~G~n~~gqlG 261 (442)
--+.-.-++.|-||+||..-.-.. -+++-+... ..++.++..+.. ..| ...+-.+..|++|.--++ .++|.
T Consensus 187 qG~gpyGi~atpdGsvwyaslagn-aiaridp~~-~~aev~p~P~~~-----~~g-sRriwsdpig~~wittwg-~g~l~ 257 (353)
T COG4257 187 QGGGPYGICATPDGSVWYASLAGN-AIARIDPFA-GHAEVVPQPNAL-----KAG-SRRIWSDPIGRAWITTWG-TGSLH 257 (353)
T ss_pred CCCCCcceEECCCCcEEEEecccc-ceEEccccc-CCcceecCCCcc-----ccc-ccccccCccCcEEEeccC-Cceee
Confidence 123345678899999997622110 111111111 122223222210 111 223344566777764221 23333
Q ss_pred CCCCCC-ccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEE--eecCCCccc
Q 013457 262 HGDFKD-HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYG--WGWNKFGQV 312 (442)
Q Consensus 262 ~~~~~~-~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~--wG~n~~GqL 312 (442)
.-+-.. ...--+++..+. .-.++.++..|+||. |+.|.-+++
T Consensus 258 rfdPs~~sW~eypLPgs~a---------rpys~rVD~~grVW~sea~agai~rf 302 (353)
T COG4257 258 RFDPSVTSWIEYPLPGSKA---------RPYSMRVDRHGRVWLSEADAGAIGRF 302 (353)
T ss_pred EeCcccccceeeeCCCCCC---------CcceeeeccCCcEEeeccccCceeec
Confidence 211111 111112222222 235678899999998 777776665
No 19
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=90.40 E-value=1.4 Score=50.29 Aligned_cols=116 Identities=14% Similarity=0.178 Sum_probs=73.1
Q ss_pred eeecccCCcEEEEE-eCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEee--eeCCceEEEEEecCceE-EEEe
Q 013457 169 KLQAFEGVSIKMVA-AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA--TVDREKMVMVACGWRHT-ISVS 244 (442)
Q Consensus 169 ~v~~~~~~~i~~ia-~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~--~~~~~~i~~I~~G~~~s-~~lt 244 (442)
.+..+++..|+.++ .+.++.++|+++|++-..= .-| .|..+. .++ .+|++|+.-..|. ++++
T Consensus 696 ~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k~g-----------~p~~l~~~gl~-G~ik~l~lD~~~nL~Alt 761 (1774)
T PF11725_consen 696 ALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--KPG-----------RPVPLSRPGLS-GEIKDLALDEKQNLYALT 761 (1774)
T ss_pred cccCCCcCcceeEEEEcCCceEEeccCCcccccc--CCC-----------CCccCCCCCCC-cchhheeeccccceeEec
Confidence 45566766777776 5789999999999987542 111 133322 232 4789999988865 5889
Q ss_pred CCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCCceEEEeCCC
Q 013457 245 SSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDG 299 (442)
Q Consensus 245 ~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G 299 (442)
.+|++|..=.-.....-.+ .......++|....+.+|..+....+|.+.+.-++
T Consensus 762 ~~G~Lf~~~k~~WQ~~~~~-~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 762 STGELFRLPKEAWQGNAEG-DQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CCCceeecCHHHhhCcccC-CccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 9999997543211111111 01123445555556777999999988888776443
No 20
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=89.42 E-value=17 Score=37.32 Aligned_cols=70 Identities=21% Similarity=0.265 Sum_probs=48.1
Q ss_pred cEEEEEccC-CeeEEEEccCCeEE-EEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEE
Q 013457 72 EIVSVTCGA-DHTTAYSESCMQVY-SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSW 148 (442)
Q Consensus 72 ~i~~i~~G~-~~~~~l~~~~G~vy-~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~w 148 (442)
.+.+|+.|. .-..+++.+ |.|| --|-....+.|..-. +..+|. ..+ .++.|+.|....-+||.+|.+|.=
T Consensus 228 ~L~qISagPtg~VwAvt~n-G~vf~R~GVsRqNp~GdsWk-dI~tP~--~a~---~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTEN-GAVFYREGVSRQNPEGDSWK-DIVTPR--QAL---EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecCcceEEEEeeC-CcEEEEecccccCCCCchhh-hccCcc--ccc---ceEEEEeccceEEEEecCCcEEEE
Confidence 588999998 666789999 7765 455544444443221 222332 221 389999999999999999999864
No 21
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=88.49 E-value=0.072 Score=57.74 Aligned_cols=129 Identities=19% Similarity=0.236 Sum_probs=84.8
Q ss_pred CceEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCC--CCccce-eEecccCCCcEEEEEcCCCceEEEeCCCcEEE
Q 013457 227 REKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDF--KDHLVP-CQLEALRESFISQISGGWRHTMAVTSDGKLYG 303 (442)
Q Consensus 227 ~~~i~~I~~G~~~s~~lt~~G~vy~~G~n~~gqlG~~~~--~~~~~p-~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~ 303 (442)
..+++.|.+-++..++|..+|++|.|-+.+.--|-.+-. .+...| .....+.+.+|+.+++..-..-++|++|+|..
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 467888888888899999999999999976555443211 111112 12235567789999999999999999999999
Q ss_pred eecCCCcccccCC--CCCcccceEeccCCC---cEEecCceEEEEEcCCCEEEEeCCCCCC
Q 013457 304 WGWNKFGQVGVGD--NVDHCSPVQVKFPLD---QISCGWRHTLAVTERQNVFSWGRGTNGQ 359 (442)
Q Consensus 304 wG~n~~GqLG~g~--~~~~~~p~~v~~~~~---~i~~G~~h~~alt~~g~v~~wG~n~~gq 359 (442)
|=.. +|.+- .......+++..... +.-|-..|.+|..+|+.+|+||---.-|
T Consensus 453 WlDE----cgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 453 WLDE----CGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred HHhh----hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 9432 11111 111122223322222 4456778899999999999999654444
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=84.94 E-value=58 Score=34.72 Aligned_cols=240 Identities=18% Similarity=0.168 Sum_probs=123.6
Q ss_pred EEEEEecC--CceEEEEeCCeEEEEeCCCCCccCCCCCCC-cccceeecCCCCCcEEEEEccCCee--EEEEccCCeEEE
Q 013457 21 VLLISAGA--SHSVALLSGNIVCSWGRGEDGQLGHGDAED-RLSPTQLSALDGHEIVSVTCGADHT--TAYSESCMQVYS 95 (442)
Q Consensus 21 i~~is~G~--~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~-~~~P~~v~~~~~~~i~~i~~G~~~~--~~l~~~~G~vy~ 95 (442)
|-+.+.+. -.++++...|.-.++|+..-|||..=+-.. ...-.+-..+. +|..++-..+-. +.=.+| |+|-+
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSpDgq~iaTG~eD-gKVKv 376 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSPDGQLIATGAED-GKVKV 376 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECCCCcEEEeccCC-CcEEE
Confidence 44444443 345667778988999998888887633211 11111111222 455565555533 333456 89999
Q ss_pred EecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccC
Q 013457 96 WGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEG 175 (442)
Q Consensus 96 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~ 175 (442)
|-..+.-+ .-+.-+.-.+...++...-....+..+-||+|-.|-...+-..- ....|.++
T Consensus 377 Wn~~SgfC----------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR-----Tft~P~p~----- 436 (893)
T KOG0291|consen 377 WNTQSGFC----------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR-----TFTSPEPI----- 436 (893)
T ss_pred EeccCceE----------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee-----eecCCCce-----
Confidence 96543211 11112222344566667777777788889999999755432110 11122222
Q ss_pred CcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCc---eEEEEeCCCCEEEE
Q 013457 176 VSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWR---HTISVSSSGRLYSY 252 (442)
Q Consensus 176 ~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~---~s~~lt~~G~vy~~ 252 (442)
+. .+++++..|+|.+.|.-.. .-..+-.+...+..+|-.|.. +.+...-.|.+.+-
T Consensus 437 ----Qf-----scvavD~sGelV~AG~~d~------------F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 437 ----QF-----SCVAVDPSGELVCAGAQDS------------FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred ----ee-----eEEEEcCCCCEEEeeccce------------EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence 22 2356666677777764221 111112222233444444432 33444555544443
Q ss_pred eCC--------CCCcCCCCCCCCccceeEecccCCCcEEEEEcC--CCceEEEeCCCcEEEeecCCCccccc
Q 013457 253 GWS--------KYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGV 314 (442)
Q Consensus 253 G~n--------~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~hs~~lt~~G~vy~wG~n~~GqLG~ 314 (442)
|+= -+.+- ....|.++. .+ +..++.- ..-.++.|-||++-.|-.+...|+|.
T Consensus 496 ~SWDkTVRiW~if~s~------~~vEtl~i~--sd--vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~ 557 (893)
T KOG0291|consen 496 GSWDKTVRIWDIFSSS------GTVETLEIR--SD--VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGS 557 (893)
T ss_pred ccccceEEEEEeeccC------ceeeeEeec--cc--eeEEEEcCCCCeEEEEEecceEEEEEhhhceeecc
Confidence 321 11111 111222222 22 5555544 56677888999999999999999965
No 23
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=82.41 E-value=42 Score=31.20 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=13.3
Q ss_pred CCceEEEEEcCCeEEEEeC
Q 013457 132 GDSHCLAVTVEGEVQSWGR 150 (442)
Q Consensus 132 G~~h~~~lt~~G~vy~wG~ 150 (442)
-+.|++++- .+..|.||-
T Consensus 130 RDGHsAcV~-gn~MyiFGG 147 (392)
T KOG4693|consen 130 RDGHSACVW-GNQMYIFGG 147 (392)
T ss_pred cCCceeeEE-CcEEEEecC
Confidence 378888876 447999983
No 24
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=81.58 E-value=0.1 Score=56.58 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=87.2
Q ss_pred CCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCC--CCCcccceee-cCCCCCcEEEEEccCCeeEEEEccCCeEE
Q 013457 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGD--AEDRLSPTQL-SALDGHEIVSVTCGADHTTAYSESCMQVY 94 (442)
Q Consensus 18 ~~~i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~--~~~~~~P~~v-~~~~~~~i~~i~~G~~~~~~l~~~~G~vy 94 (442)
..+++.|.+-.+..++|...|++|.|-..+.--|...- ......|... ..+-+.+|+.+++..-...++|++ |+|-
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~n-ghla 451 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATEN-GHLA 451 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecC-Cchh
Confidence 45788888888999999999999999876654333211 1233444322 255667899999999999999999 9999
Q ss_pred EEecCCCCccCCCCCCCce-eeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCC
Q 013457 95 SWGWGDFGRLGHGNSSDLF-TPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQ 152 (442)
Q Consensus 95 ~wG~n~~gqlG~~~~~~~~-~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~ 152 (442)
+|=. .+|.+...... ..+....+.+..+++.-|...|.++..+|..+|-||.-.
T Consensus 452 sWlD----EcgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVP 506 (3015)
T KOG0943|consen 452 SWLD----ECGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVP 506 (3015)
T ss_pred hHHh----hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeee
Confidence 9932 22222221111 111111234556777778888888888999999999543
No 25
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.98 E-value=84 Score=35.80 Aligned_cols=204 Identities=18% Similarity=0.150 Sum_probs=100.4
Q ss_pred EEEEeCCeEEEEeCCCCCccCCCCCCC--cccceeecCCCCCcEEEEEccCCeeEEEEccCCeEEEEecCCCCc-cCCCC
Q 013457 32 VALLSGNIVCSWGRGEDGQLGHGDAED--RLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGR-LGHGN 108 (442)
Q Consensus 32 ~~l~~~g~v~~wG~n~~gqLG~g~~~~--~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G~vy~wG~n~~gq-lG~~~ 108 (442)
+=++.|.++|.|-.++.+++-.-+..+ ...=..+..-++..+-.| .|.++|.+. -+|+..|--..-. .+...
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~-~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATP-VEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEeccc-ceEEEEEEEeccccCcccc
Confidence 458899999999999877765432221 111111222222233333 478888888 8999988432211 11111
Q ss_pred CCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCC----------CCcCC--------CCCCCcccceee
Q 013457 109 SSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQN----------GQLGL--------GTTEDSLVPQKL 170 (442)
Q Consensus 109 ~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~----------gqlG~--------~~~~~~~~p~~v 170 (442)
..+. ......+..|..|.+ +++|+||.-|.+.. |..+. ...-....|..+
T Consensus 168 f~~~----~~i~~dg~~V~~I~~--------t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 168 FNTS----FKISVDGVSVNCITY--------TENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred cccc----eeeecCCceEEEEEe--------ccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 1110 001112334444443 45555555544321 11111 000123345432
Q ss_pred ec--ccCCcEEEEEeCCCeE--EEEecCCcEEEEeCCCCCCcCCCCC-----------CCeeeeeEeeeeCCceEEEEE-
Q 013457 171 QA--FEGVSIKMVAAGAEHS--VAVAEDGELYGWGWGRYGNLGLGDR-----------NDRLIPEKVATVDREKMVMVA- 234 (442)
Q Consensus 171 ~~--~~~~~i~~ia~G~~h~--~~Lt~~G~vy~wG~n~~GqlG~~~~-----------~~~~~p~~v~~~~~~~i~~I~- 234 (442)
.. .....|++|+...... ..+++.|.|-+|=....|+-+...- .....| +....-..|++|+
T Consensus 236 ~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~--~~~s~f~~IvsI~~ 313 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNP--LDDSVFFSIVSISP 313 (1311)
T ss_pred cCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhcccc--CCCcccceeEEecc
Confidence 22 2255899999887764 5667889888886655554442110 000000 0000112344443
Q ss_pred -----ecCceEEEEeCCCC-EEEEeC
Q 013457 235 -----CGWRHTISVSSSGR-LYSYGW 254 (442)
Q Consensus 235 -----~G~~~s~~lt~~G~-vy~~G~ 254 (442)
.-+-|.+++|..|. +|.=|.
T Consensus 314 l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 314 LSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cCcccccceeEEEEecCCeEEEEecc
Confidence 23458899999884 777664
No 26
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=78.75 E-value=1.1e+02 Score=33.73 Aligned_cols=219 Identities=11% Similarity=0.047 Sum_probs=105.0
Q ss_pred CCEEEEE--ecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccce--eecCCCCCcEEEEEcc-----CCeeEEEEcc
Q 013457 19 RPVLLIS--AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPT--QLSALDGHEIVSVTCG-----ADHTTAYSES 89 (442)
Q Consensus 19 ~~i~~is--~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~--~v~~~~~~~i~~i~~G-----~~~~~~l~~~ 89 (442)
+.+..+. ....+.+++|++|++|..=.. ++-.......-.|. .+...++.+|+.+.+- ..+.++++.+
T Consensus 535 D~l~~~~~~~t~d~LllfTs~Grv~~l~~~---~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~ 611 (800)
T TIGR01063 535 DFIEQLLVASTHDYLLFFTNRGKVYWLKVY---QIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKN 611 (800)
T ss_pred CeeEEEEEecCCCeEEEEeCCCcEEEEEhh---hCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCC
Confidence 3444443 345667889999999988221 12111111111111 2233345667776552 2346677777
Q ss_pred CCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEE--EeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccc
Q 013457 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVP 167 (442)
Q Consensus 90 ~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I--a~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p 167 (442)
|.+.-.-.+.+-.... ..-..+..-.+..++.+ +....+.+++|++|++|.+-...--..+.......
T Consensus 612 -GyiKRi~l~~~~~~~r------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~--- 681 (800)
T TIGR01063 612 -GVVKKTSLTEFSNIRS------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR--- 681 (800)
T ss_pred -CEEEEEEhHHhhhhcc------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee---
Confidence 8777664433321100 00000111123344443 33456789999999999997655444433221111
Q ss_pred eeeecccCCcEEEEEe--CCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeC-CceEEEEE--ecCceEEE
Q 013457 168 QKLQAFEGVSIKMVAA--GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVD-REKMVMVA--CGWRHTIS 242 (442)
Q Consensus 168 ~~v~~~~~~~i~~ia~--G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~-~~~i~~I~--~G~~~s~~ 242 (442)
.+..-++.+|+.+.. ...+.+++|++|.+.-.-...+-....+.... ..+.... +..++.+. ......++
T Consensus 682 -~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv----~~ikl~~~~d~lv~~~~v~~~~~v~l 756 (800)
T TIGR01063 682 -GIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGV----KSIKITDRNGQVVGAIAVDDDDELML 756 (800)
T ss_pred -cccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcce----EEEEccCCCCeEEEEEEecCCCeEEE
Confidence 122223556666554 23467888899977765433221111100000 0011111 12333322 23345777
Q ss_pred EeCCCCEEEEeCC
Q 013457 243 VSSSGRLYSYGWS 255 (442)
Q Consensus 243 lt~~G~vy~~G~n 255 (442)
++++|.+..+-.+
T Consensus 757 iT~~G~~lrf~~~ 769 (800)
T TIGR01063 757 ITSAGKLIRTSVQ 769 (800)
T ss_pred EecCCeEEEeeHh
Confidence 8888888776543
No 27
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=78.20 E-value=78 Score=31.69 Aligned_cols=113 Identities=16% Similarity=0.154 Sum_probs=53.5
Q ss_pred CEEEEEecCCceEEEE--eCCeEEEEeCCCCCccCCCCCCCcccceeecCCCC--CcEEEEEccCCe--eEE--EEccCC
Q 013457 20 PVLLISAGASHSVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDG--HEIVSVTCGADH--TTA--YSESCM 91 (442)
Q Consensus 20 ~i~~is~G~~~~~~l~--~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~--~~i~~i~~G~~~--~~~--l~~~~G 91 (442)
.|+.+....+-+++++ .||.|++|=--.- -+..+...|.++..+.+ ..|+++.+|..- +.+ ..+| .
T Consensus 125 ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l-----v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D-~ 198 (476)
T KOG0646|consen 125 SITCLKFSDDGSHIITGSKDGAVLVWLLTDL-----VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASED-R 198 (476)
T ss_pred ceeEEEEeCCCcEEEecCCCccEEEEEEEee-----cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCC-c
Confidence 4555555555555555 6777777752210 11122225555555554 458887776552 111 2223 3
Q ss_pred eEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEe
Q 013457 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWG 149 (442)
Q Consensus 92 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG 149 (442)
.+-+|--. .+ ..-..+.......-+.+.-++.++++=+++|.+|..-
T Consensus 199 t~k~wdlS------~g-----~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 199 TIKLWDLS------LG-----VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eEEEEEec------cc-----eeeEEEecCCcceeEEEcccccEEEecCCcceEEeee
Confidence 44444211 00 0011111111112333445677788888899888753
No 28
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=77.38 E-value=48 Score=32.57 Aligned_cols=15 Identities=33% Similarity=0.632 Sum_probs=12.1
Q ss_pred CceEEEeCCCcEEEe
Q 013457 290 RHTMAVTSDGKLYGW 304 (442)
Q Consensus 290 ~hs~~lt~~G~vy~w 304 (442)
.+.++.+.+|+||++
T Consensus 362 ~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCceEEEe
Confidence 467778889999986
No 29
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.28 E-value=78 Score=36.04 Aligned_cols=161 Identities=17% Similarity=0.253 Sum_probs=79.9
Q ss_pred EEEEccCCeEEEEecCCCCccCCCCCCC--ceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCC-CCcCCCC
Q 013457 84 TAYSESCMQVYSWGWGDFGRLGHGNSSD--LFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQN-GQLGLGT 160 (442)
Q Consensus 84 ~~l~~~~G~vy~wG~n~~gqlG~~~~~~--~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~-gqlG~~~ 160 (442)
+.++-| .++|.|-.++.+++-.-+... ...-..++.-.+..+-.| .|.++|...=+|+..|-... .+.+...
T Consensus 93 aWiTiD-n~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITID-NNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred eEEEeC-CeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEeccccCcccc
Confidence 567778 999999988866654332211 111111222223223233 58999999999999884322 1111111
Q ss_pred CCCcccceeeecccCCcEEEEEeCCCeEEEEecCCcEEEEeCCC-------------CCCcC----CCC-CCCeeeeeEe
Q 013457 161 TEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGR-------------YGNLG----LGD-RNDRLIPEKV 222 (442)
Q Consensus 161 ~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~-------------~GqlG----~~~-~~~~~~p~~v 222 (442)
-... -.+ ...+..|..|.+ +++|+||.-|.+. +++-- +.. .-....|..+
T Consensus 168 f~~~---~~i-~~dg~~V~~I~~--------t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 168 FNTS---FKI-SVDGVSVNCITY--------TENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred cccc---eee-ecCCceEEEEEe--------ccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 1111 011 123444554443 4556655555432 22200 000 0112334422
Q ss_pred e--eeCCceEEEEEecCceE--EEEeCCCCEEEEeCCCCCcCC
Q 013457 223 A--TVDREKMVMVACGWRHT--ISVSSSGRLYSYGWSKYGQLG 261 (442)
Q Consensus 223 ~--~~~~~~i~~I~~G~~~s--~~lt~~G~vy~~G~n~~gqlG 261 (442)
. ....+.|.+|+.+.... +.+++.|.|=+|=-...|+-+
T Consensus 236 ~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred cCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccc
Confidence 1 12356788988887765 467788887766555555443
No 30
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=74.78 E-value=19 Score=32.75 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=25.8
Q ss_pred CCcEEEEEeCCceEEEEEcCCeEEEEeCCC
Q 013457 123 SLRVKQIACGDSHCLAVTVEGEVQSWGRNQ 152 (442)
Q Consensus 123 ~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~ 152 (442)
+.++..+.|...+.++||++|.+|+|--..
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 447888999999999999999999997543
No 31
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=73.78 E-value=75 Score=29.34 Aligned_cols=164 Identities=18% Similarity=0.323 Sum_probs=83.9
Q ss_pred CCCCCCCEEEEEecCCceEEEE--eCCeEEEEeCCCCCccCC------------CCC-------CCcccceeecCCCC--
Q 013457 14 TAAPFRPVLLISAGASHSVALL--SGNIVCSWGRGEDGQLGH------------GDA-------EDRLSPTQLSALDG-- 70 (442)
Q Consensus 14 ~~~~~~~i~~is~G~~~~~~l~--~~g~v~~wG~n~~gqLG~------------g~~-------~~~~~P~~v~~~~~-- 70 (442)
+.+....|+.+++|.+|++-+- ..|..+--=.-.++|... +.. .....|.++..+++
T Consensus 4 ~~~~d~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~ 83 (311)
T KOG0315|consen 4 SPPTDDPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHT 83 (311)
T ss_pred CCCCCCceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccC
Confidence 3444578999999999998765 344443222222333221 000 11233444444443
Q ss_pred CcEEEEEccC--CeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEe--CCceEEEEEcCCeEE
Q 013457 71 HEIVSVTCGA--DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQ 146 (442)
Q Consensus 71 ~~i~~i~~G~--~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~--G~~h~~~lt~~G~vy 146 (442)
++|..|..-. .--+-=.+| |.+-.|-.-. +. .+...... ..|..|.. ...+.+.-+.+|.|+
T Consensus 84 kNVtaVgF~~dgrWMyTgseD-gt~kIWdlR~---~~--------~qR~~~~~--spVn~vvlhpnQteLis~dqsg~ir 149 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSED-GTVKIWDLRS---LS--------CQRNYQHN--SPVNTVVLHPNQTELISGDQSGNIR 149 (311)
T ss_pred CceEEEEEeecCeEEEecCCC-ceEEEEeccC---cc--------cchhccCC--CCcceEEecCCcceEEeecCCCcEE
Confidence 4566555432 222233355 8888885322 11 11111111 23334433 345566667889999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCC--eEEEEecCCcEEEEeC
Q 013457 147 SWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGW 202 (442)
Q Consensus 147 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~--h~~~Lt~~G~vy~wG~ 202 (442)
.|-...+ .-.....|.. +..|.+++...+ -.++.++.|+.|+|-.
T Consensus 150 vWDl~~~------~c~~~liPe~-----~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 150 VWDLGEN------SCTHELIPED-----DTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred EEEccCC------ccccccCCCC-----CcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 9964321 1112222322 234666666554 4567789999999964
No 32
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=72.67 E-value=1.6e+02 Score=32.55 Aligned_cols=165 Identities=11% Similarity=0.029 Sum_probs=83.0
Q ss_pred ccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC-----CceEEEEEcCCeEEEEeCCC
Q 013457 78 CGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGRNQ 152 (442)
Q Consensus 78 ~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G-----~~h~~~lt~~G~vy~wG~n~ 152 (442)
...++.+++|+. |++|..-....-..+.... -......+....+++|+.+.+- ....+++|++|.+.-.-.+.
T Consensus 544 ~t~d~LllfTs~-Grv~~l~~~~IP~~~r~~~-G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~ 621 (800)
T TIGR01063 544 STHDYLLFFTNR-GKVYWLKVYQIPEASRTAK-GKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTE 621 (800)
T ss_pred cCCCeEEEEeCC-CcEEEEEhhhCcCCCcCCC-CcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHH
Confidence 345556777777 9999984322222111100 0001011233456677776652 23578899999887765433
Q ss_pred CCCcCCCCCCCcccceeeecccCCcEEEE--EeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceE
Q 013457 153 NGQLGLGTTEDSLVPQKLQAFEGVSIKMV--AAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKM 230 (442)
Q Consensus 153 ~gqlG~~~~~~~~~p~~v~~~~~~~i~~i--a~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i 230 (442)
+-..... . ...+..-++..++.+ +...++.+++|++|++|.+-...--..+....... .+..-.+++|
T Consensus 622 ~~~~~r~----G--~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~----~i~L~~~E~V 691 (800)
T TIGR01063 622 FSNIRSN----G--IIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR----GIKLKNEDFV 691 (800)
T ss_pred hhhhccC----C--cccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee----cccCCCCCEE
Confidence 2110000 0 000000112234433 33446799999999999886554333332221111 1222244566
Q ss_pred EEEEec--CceEEEEeCCCCEEEEeC
Q 013457 231 VMVACG--WRHTISVSSSGRLYSYGW 254 (442)
Q Consensus 231 ~~I~~G--~~~s~~lt~~G~vy~~G~ 254 (442)
+.+..- ..+.+++|++|.+.-.--
T Consensus 692 v~~~~v~~~~~ll~vT~~G~~Kr~~l 717 (800)
T TIGR01063 692 VSLLVVSEESYLLIVTENGYGKRTSI 717 (800)
T ss_pred EEEEEeccccEEEEEecCCcEEEEEH
Confidence 665542 335778888887776643
No 33
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=71.67 E-value=18 Score=32.77 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=26.4
Q ss_pred CCCCCCEEEEEecCCceEEEEeCCeEEEEeCC
Q 013457 15 AAPFRPVLLISAGASHSVALLSGNIVCSWGRG 46 (442)
Q Consensus 15 ~~~~~~i~~is~G~~~~~~l~~~g~v~~wG~n 46 (442)
...+.+++.+.+-..+.++||.+|.+|+|=-.
T Consensus 9 i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 9 IVLGSPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred EecCCceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 34456778889999999999999999999643
No 34
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=70.08 E-value=80 Score=29.70 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=52.9
Q ss_pred CceEEEEeCCeEEEEeCC-CCCccCCCCCCCcccceeecCCCCCcEEEEEccCCeeEEEEccCCeEEEEecCC-CCccCC
Q 013457 29 SHSVALLSGNIVCSWGRG-EDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGD-FGRLGH 106 (442)
Q Consensus 29 ~~~~~l~~~g~v~~wG~n-~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G~vy~wG~n~-~gqlG~ 106 (442)
-|.+++..||..|..-.. .-++++....+....|.+. +..-+.--+..++.. |.||.-|.+- +|+|-.
T Consensus 106 Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~---------~~a~~nlet~vfD~~-G~lWFt~q~G~yGrLdP 175 (353)
T COG4257 106 PHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL---------EHADANLETAVFDPW-GNLWFTGQIGAYGRLDP 175 (353)
T ss_pred CceEEECCCCCeeEecCcceeEEecCcccceEEeeccc---------ccCCCcccceeeCCC-ccEEEeeccccceecCc
Confidence 588888899999877433 2223332222222233322 223334455667777 9999988632 343322
Q ss_pred CCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEe
Q 013457 107 GNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWG 149 (442)
Q Consensus 107 ~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG 149 (442)
.......-|.| .-+.-.-++.|-||+||.--
T Consensus 176 a~~~i~vfpaP------------qG~gpyGi~atpdGsvwyas 206 (353)
T COG4257 176 ARNVISVFPAP------------QGGGPYGICATPDGSVWYAS 206 (353)
T ss_pred ccCceeeeccC------------CCCCCcceEECCCCcEEEEe
Confidence 11111111111 12345678899999999863
No 35
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=69.17 E-value=1.3e+02 Score=30.18 Aligned_cols=70 Identities=9% Similarity=0.036 Sum_probs=36.5
Q ss_pred CCEEEEEe-cCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceee--cCCCCCcEEEEEccCCeeEEEEccCCeEEE
Q 013457 19 RPVLLISA-GASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQL--SALDGHEIVSVTCGADHTTAYSESCMQVYS 95 (442)
Q Consensus 19 ~~i~~is~-G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v--~~~~~~~i~~i~~G~~~~~~l~~~~G~vy~ 95 (442)
.+|+.+.= -..+.++|.+||.|.+.- -.|.. ....+..+ ....+.++-.+..+..-.++|+.+ +++|.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~-~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGN-NRFYV 151 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCC-CeEEE
Confidence 45555543 245677777888877762 22222 11111111 112222333445555567778887 99998
Q ss_pred Ee
Q 013457 96 WG 97 (442)
Q Consensus 96 wG 97 (442)
-=
T Consensus 152 v~ 153 (410)
T PF04841_consen 152 VN 153 (410)
T ss_pred Ee
Confidence 73
No 36
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=69.07 E-value=11 Score=22.86 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.5
Q ss_pred cEEEEEeCC-ceEEEEEcCCeEEEE
Q 013457 125 RVKQIACGD-SHCLAVTVEGEVQSW 148 (442)
Q Consensus 125 ~i~~Ia~G~-~h~~~lt~~G~vy~w 148 (442)
.+++|++|. ....+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 789999999 888999999999963
No 37
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=66.37 E-value=1.4e+02 Score=29.45 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=13.0
Q ss_pred ceEEEEEcCCeEEEEeCC
Q 013457 134 SHCLAVTVEGEVQSWGRN 151 (442)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n 151 (442)
.|+++...+++||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466555468999999853
No 38
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=65.36 E-value=17 Score=22.04 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.5
Q ss_pred cEEEEEeCC-CeEEEEecCCcEEEE
Q 013457 177 SIKMVAAGA-EHSVAVAEDGELYGW 200 (442)
Q Consensus 177 ~i~~ia~G~-~h~~~Lt~~G~vy~w 200 (442)
.+++|++|. +...+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 689999999 899999999999953
No 39
>PRK05560 DNA gyrase subunit A; Validated
Probab=63.48 E-value=2.4e+02 Score=31.18 Aligned_cols=219 Identities=14% Similarity=0.086 Sum_probs=106.2
Q ss_pred CCEEEEE--ecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccce--eecCCCCCcEEEEEccC-----CeeEEEEcc
Q 013457 19 RPVLLIS--AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPT--QLSALDGHEIVSVTCGA-----DHTTAYSES 89 (442)
Q Consensus 19 ~~i~~is--~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~--~v~~~~~~~i~~i~~G~-----~~~~~l~~~ 89 (442)
..+..+. ....+.+++|+.|++|..=... +-.......-.|. .+...++..|+.+.+-. ...++++++
T Consensus 537 D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~---iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~ 613 (805)
T PRK05560 537 DFVEHLFVASTHDTLLFFTNRGRVYRLKVYE---IPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKN 613 (805)
T ss_pred CeeEEEEEecCCCeEEEEecCCeEEEEEhhh---CcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCC
Confidence 3444443 3456678899999999875432 1111111111111 23334556777766644 346777777
Q ss_pred CCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEE--eCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccc
Q 013457 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA--CGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVP 167 (442)
Q Consensus 90 ~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia--~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p 167 (442)
|.+.---.+++-....+ ....+..-.+..++.+. ....+.+++|++|++|.+-...--..+.....
T Consensus 614 -GyiKRi~l~~~~~~~r~------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~G----- 681 (805)
T PRK05560 614 -GTVKKTSLSEFSNIRSN------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARG----- 681 (805)
T ss_pred -CEEEEEEhHHhhhcccC------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCC-----
Confidence 87765543332211000 01111111233455443 34567899999999999876543333322111
Q ss_pred eeeec-ccCCcEEEEEeCC---CeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeC-CceEEEE--EecCceE
Q 013457 168 QKLQA-FEGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVD-REKMVMV--ACGWRHT 240 (442)
Q Consensus 168 ~~v~~-~~~~~i~~ia~G~---~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~-~~~i~~I--~~G~~~s 240 (442)
..+.. -++.+|+.+.+-. .+.+++|+.|.+.-.-.+.+-....+.... ..+.... +..++.+ ..+....
T Consensus 682 v~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~----~~lkl~~~~d~lv~v~~v~~~~~v 757 (805)
T PRK05560 682 VRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGV----ITIKITEKNGKLVGALPVDDDDEI 757 (805)
T ss_pred cccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcE----EeeeccCCCCeEEEEEEecCCCeE
Confidence 11111 2345666655432 267888888877655432221111000000 0011111 1233332 2344457
Q ss_pred EEEeCCCCEEEEeCCC
Q 013457 241 ISVSSSGRLYSYGWSK 256 (442)
Q Consensus 241 ~~lt~~G~vy~~G~n~ 256 (442)
++++.+|++..+-.++
T Consensus 758 ~i~T~~G~~lrf~~~e 773 (805)
T PRK05560 758 MLITDSGKLIRTRVSE 773 (805)
T ss_pred EEEecCCeEEEEEHHH
Confidence 7888888887766443
No 40
>PHA02713 hypothetical protein; Provisional
Probab=58.58 E-value=2.4e+02 Score=29.60 Aligned_cols=13 Identities=8% Similarity=0.118 Sum_probs=9.7
Q ss_pred EEcCCeEEEEeCC
Q 013457 139 VTVEGEVQSWGRN 151 (442)
Q Consensus 139 lt~~G~vy~wG~n 151 (442)
..-+|+||+.|-.
T Consensus 395 ~~~~g~IYviGG~ 407 (557)
T PHA02713 395 CVLDQYIYIIGGR 407 (557)
T ss_pred EEECCEEEEEeCC
Confidence 3458999999853
No 41
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=58.36 E-value=2.1e+02 Score=28.75 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=38.8
Q ss_pred CcEEEEEccCC-eeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEec--ccCCCcEEEEEeCCceEEEEEcCCeEEE
Q 013457 71 HEIVSVTCGAD-HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIK--ALHSLRVKQIACGDSHCLAVTVEGEVQS 147 (442)
Q Consensus 71 ~~i~~i~~G~~-~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~--~~~~~~i~~Ia~G~~h~~~lt~~G~vy~ 147 (442)
.+|+.+.--.+ .-++|.++ |.++..- -+|.. ....+..+. .....++-.+..+..-.++||.++++|.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~d-G~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSD-GTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYV 151 (410)
T ss_pred CCEEEEEECCCCeEEEEEcC-CEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEE
Confidence 46776665444 55566666 9888763 22332 011111111 1112234444556566889999999998
Q ss_pred EeC
Q 013457 148 WGR 150 (442)
Q Consensus 148 wG~ 150 (442)
.-.
T Consensus 152 v~n 154 (410)
T PF04841_consen 152 VNN 154 (410)
T ss_pred EeC
Confidence 843
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=58.16 E-value=1.4e+02 Score=26.57 Aligned_cols=106 Identities=16% Similarity=0.221 Sum_probs=51.1
Q ss_pred cEEEEEccCC-eeEEEEc-cCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCC-ceEEEEEc-CCeEEE
Q 013457 72 EIVSVTCGAD-HTTAYSE-SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-SHCLAVTV-EGEVQS 147 (442)
Q Consensus 72 ~i~~i~~G~~-~~~~l~~-~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~-~h~~~lt~-~G~vy~ 147 (442)
.|..+..... ..++... + |.|+.|-...... ...+. .....|..+.... ...++... +|.|+.
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRD-KTIKVWDVETGKC-----------LTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred cEEEEEEcCCCCEEEEecCC-CeEEEEECCCcEE-----------EEEec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 4666665544 2333343 5 8999986542111 11111 1122466666554 33334444 888998
Q ss_pred EeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCC--eEEEEecCCcEEEEeC
Q 013457 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGW 202 (442)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~--h~~~Lt~~G~vy~wG~ 202 (442)
|-...... ...+. .....|..+....+ ..++...+|.|+.|-.
T Consensus 162 ~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 206 (289)
T cd00200 162 WDLRTGKC-----------VATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206 (289)
T ss_pred EEcccccc-----------ceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEEC
Confidence 86532100 00111 11123445544333 4555556888888854
No 43
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=56.94 E-value=33 Score=19.80 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCceEEEEEcCCeEEE
Q 013457 123 SLRVKQIACGDSHCLAVTVEGEVQS 147 (442)
Q Consensus 123 ~~~i~~Ia~G~~h~~~lt~~G~vy~ 147 (442)
++.|+.|++|....++.|+.+-|-.
T Consensus 1 gE~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeEEe
Confidence 3579999999999999998876543
No 44
>PHA03098 kelch-like protein; Provisional
Probab=56.51 E-value=2.5e+02 Score=29.11 Aligned_cols=17 Identities=12% Similarity=0.136 Sum_probs=11.6
Q ss_pred ceEEEEEcCCeEEEEeCC
Q 013457 134 SHCLAVTVEGEVQSWGRN 151 (442)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n 151 (442)
.|+++. -+|+||.+|-.
T Consensus 335 ~~~~~~-~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVTV-FNNRIYVIGGI 351 (534)
T ss_pred cceEEE-ECCEEEEEeCC
Confidence 455444 47899999853
No 45
>PRK05560 DNA gyrase subunit A; Validated
Probab=54.59 E-value=3.4e+02 Score=30.06 Aligned_cols=164 Identities=10% Similarity=0.062 Sum_probs=83.1
Q ss_pred EccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCC-----ceEEEEEcCCeEEEEeCC
Q 013457 77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-----SHCLAVTVEGEVQSWGRN 151 (442)
Q Consensus 77 ~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~-----~h~~~lt~~G~vy~wG~n 151 (442)
+...++.+++|+. |++|..-....-..+.... -......+....+++|+.+.+-. ...+++|++|.+.-.-.+
T Consensus 545 ~~t~d~LllfTs~-Grv~~l~v~~iP~~~~~~~-G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~ 622 (805)
T PRK05560 545 ASTHDTLLFFTNR-GRVYRLKVYEIPEASRTAR-GRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLS 622 (805)
T ss_pred ecCCCeEEEEecC-CeEEEEEhhhCcCCCcCCC-CeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhH
Confidence 3444556777777 9999986543322211000 00111112334566788776643 457889999987766433
Q ss_pred CCCCcCCCCCCCcccceeeecccCCcEEEE--EeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeE-eeeeCCc
Q 013457 152 QNGQLGLGTTEDSLVPQKLQAFEGVSIKMV--AAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEK-VATVDRE 228 (442)
Q Consensus 152 ~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i--a~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~-v~~~~~~ 228 (442)
.+-....+ . ...+..-++..++.+ +...++.+++|++|++|.+-...--..+.... ... +..-.++
T Consensus 623 ~~~~~~r~----G--~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~-----Gv~~i~L~~~E 691 (805)
T PRK05560 623 EFSNIRSN----G--IIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR-----GVRGIKLREGD 691 (805)
T ss_pred HhhhcccC----C--ceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC-----CcccccCCCCC
Confidence 32111000 0 000111123344433 33445799999999999886543222222111 111 1112345
Q ss_pred eEEEEEecC---ceEEEEeCCCCEEEEe
Q 013457 229 KMVMVACGW---RHTISVSSSGRLYSYG 253 (442)
Q Consensus 229 ~i~~I~~G~---~~s~~lt~~G~vy~~G 253 (442)
+|+.+.+-. .+.+++|+.|.+.-.-
T Consensus 692 ~Vv~~~~v~~~~~~il~vTk~G~iKr~~ 719 (805)
T PRK05560 692 EVVSMDVVREDSQEILTVTENGYGKRTP 719 (805)
T ss_pred EEEEEEEEcCCCcEEEEEEeCCeEEEEE
Confidence 666655432 2577888888766654
No 46
>PLN02153 epithiospecifier protein
Probab=54.20 E-value=2.1e+02 Score=27.61 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=12.1
Q ss_pred ceEEEEEcCCeEEEEeCC
Q 013457 134 SHCLAVTVEGEVQSWGRN 151 (442)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n 151 (442)
.|++++ .++++|.+|--
T Consensus 130 ~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeEEEE-ECCEEEEECCc
Confidence 566655 46799999853
No 47
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=53.85 E-value=2.6e+02 Score=28.60 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=34.2
Q ss_pred CcEEEEEccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEE
Q 013457 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQS 147 (442)
Q Consensus 71 ~~i~~i~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~ 147 (442)
+.|..++.+.+--++--+++|.++.|+...+ ... +-+..--|.-+++++..+|.+.+
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~----------~~~----------k~~~aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTN----------RIS----------KQVHAHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCc----------eEE----------eEeeecCCceEEEEEecCccEee
Confidence 3566677776666666666699999986321 001 11112335566777777777776
No 48
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=53.81 E-value=2.2e+02 Score=27.76 Aligned_cols=54 Identities=9% Similarity=0.000 Sum_probs=29.9
Q ss_pred CceEEEeCCCcEEEeecCCCcccccCCCCCcccceEecc-C-CCcEEecCceEEEEEcCCCEEEE
Q 013457 290 RHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKF-P-LDQISCGWRHTLAVTERQNVFSW 352 (442)
Q Consensus 290 ~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~-~-~~~i~~G~~h~~alt~~g~v~~w 352 (442)
.+.++.+.+|.||++-... |++= .-.++.. . ......-..+.++.+.||+||+|
T Consensus 321 ~~l~~~~~~G~l~~~d~~t-G~~~--------~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSRED-GSFV--------ARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCCEEEEEECCC-CCEE--------EEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 4667778899999985432 2210 0000100 0 01222333568888999999986
No 49
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=52.26 E-value=2e+02 Score=26.71 Aligned_cols=36 Identities=17% Similarity=0.410 Sum_probs=23.2
Q ss_pred cceeeecccCCcEEE-EEeCCCeEEEE-ecCCcEEEEeC
Q 013457 166 VPQKLQAFEGVSIKM-VAAGAEHSVAV-AEDGELYGWGW 202 (442)
Q Consensus 166 ~p~~v~~~~~~~i~~-ia~G~~h~~~L-t~~G~vy~wG~ 202 (442)
.|..+..-.+ .|++ +-|-.+|+++- ++++.|-.|-.
T Consensus 135 pp~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 135 PPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred CchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEe
Confidence 3444444333 3444 56888887776 78899999953
No 50
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=51.74 E-value=4e+02 Score=30.06 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=32.2
Q ss_pred ceEEEeCCCcEEEeecCCCcccccCCCCCcccceEeccCCCcEEecCceEEEEEcCCCEEEEeCC
Q 013457 291 HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRG 355 (442)
Q Consensus 291 hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~i~~G~~h~~alt~~g~v~~wG~n 355 (442)
+.+-|+++|++|+=+ ..+.....++.....|-++.|.+..+.+.=-+
T Consensus 593 ~~~GLs~~~~Ly~n~------------------~~la~~~tSF~v~~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 593 VLFGLSSNGRLYANS------------------RLLASNCTSFAVTDSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred EEEEECCCCEEEECC------------------EEEecCCceEEEEcCEEEEEecCceEEEEECc
Confidence 677888899998611 23444555777788888888887766666443
No 51
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=50.70 E-value=3.7e+02 Score=29.36 Aligned_cols=158 Identities=11% Similarity=0.024 Sum_probs=82.5
Q ss_pred ccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEE--eCCceEEEEEcCCeEEEEeCCCCCC
Q 013457 78 CGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA--CGDSHCLAVTVEGEVQSWGRNQNGQ 155 (442)
Q Consensus 78 ~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia--~G~~h~~~lt~~G~vy~wG~n~~gq 155 (442)
.-....++++++ |-|-.--...+. +..+..-.+..++.+. ...++.+++|++|++|.+-.+.--
T Consensus 492 ~~e~v~VilTk~-G~IKr~~~~~~~------------~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP- 557 (735)
T TIGR01062 492 PKEPVTIILSKM-GWVRSAKGHDID------------LSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP- 557 (735)
T ss_pred cCcceEEEEecC-CEEEeccccccc------------hhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC-
Confidence 346677888888 876644322221 1122222334455443 345568999999999999765432
Q ss_pred cCCCCCCCccccee--eecccCCcEEEEEeCCC--eEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEE
Q 013457 156 LGLGTTEDSLVPQK--LQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMV 231 (442)
Q Consensus 156 lG~~~~~~~~~p~~--v~~~~~~~i~~ia~G~~--h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~ 231 (442)
.|.+ .-.|.. +..-++..|+.+.+... +.+++|+.|..+..-.+.+-....+...... + ..+..++
T Consensus 558 ~GR~----aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~RaGKgvi~----L--k~~d~lv 627 (735)
T TIGR01062 558 SARG----QGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKAGKALIN----L--PENASVI 627 (735)
T ss_pred cCcc----CCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcCCeEEEE----e--CCCCEEE
Confidence 1221 112221 22235667887776543 5788899997776654332211110000000 1 1122222
Q ss_pred E--EEecC-ceEEEEeCCCCEEEEeCCCCCc
Q 013457 232 M--VACGW-RHTISVSSSGRLYSYGWSKYGQ 259 (442)
Q Consensus 232 ~--I~~G~-~~s~~lt~~G~vy~~G~n~~gq 259 (442)
. ...+. .+.++++++|++..+--++--+
T Consensus 628 ~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~ 658 (735)
T TIGR01062 628 APLPVNGDSDMIAAITEAGRMLVFPIDDLPE 658 (735)
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEHHHCCc
Confidence 2 12233 2577889999998887554333
No 52
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=50.69 E-value=2.6e+02 Score=27.59 Aligned_cols=157 Identities=17% Similarity=0.261 Sum_probs=73.4
Q ss_pred cEEEEEeCCc-eE-EEEEcCCe-EEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCC-eEEEEecCCcEEEE
Q 013457 125 RVKQIACGDS-HC-LAVTVEGE-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE-HSVAVAEDGELYGW 200 (442)
Q Consensus 125 ~i~~Ia~G~~-h~-~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~-h~~~Lt~~G~vy~w 200 (442)
.+..|..|.. |. ++.+.||+ +|+.+. .|. -..+.......+..|..|.. +.++++.||+...-
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~-----------vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v 94 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANR--DGT-----------VSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV 94 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEET--TSE-----------EEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcC--CCe-----------EEEEECCcccEEEEEecCCCcceEEEcCCCCEEEE
Confidence 4566766543 55 45677776 777653 221 23344444556777877664 57888999986555
Q ss_pred eCCCCCCcCCCCCCCeeeeeEeeee------CCceEEEEEecCc---eEEEEeCCCCEEEEeCCCCCcCCCCCCCCccce
Q 013457 201 GWGRYGNLGLGDRNDRLIPEKVATV------DREKMVMVACGWR---HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVP 271 (442)
Q Consensus 201 G~n~~GqlG~~~~~~~~~p~~v~~~------~~~~i~~I~~G~~---~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p 271 (442)
++...+++-.-+......-..++.. ...++..|..... +.+.+.+.+++|.--.... .+
T Consensus 95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~------------~~ 162 (369)
T PF02239_consen 95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP------------KN 162 (369)
T ss_dssp EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS------------SC
T ss_pred EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc------------cc
Confidence 5433344433222221111122111 1235556654333 4566777888887632110 11
Q ss_pred eEecccCCCcEEEEEcC-CCceEEEeCCCcEEEeecCCCccccc
Q 013457 272 CQLEALRESFISQISGG-WRHTMAVTSDGKLYGWGWNKFGQVGV 314 (442)
Q Consensus 272 ~~v~~~~~~~i~~I~~G-~~hs~~lt~~G~vy~wG~n~~GqLG~ 314 (442)
. .++.+..| .-|=.+++.+|+.|.-+.|....++.
T Consensus 163 ~--------~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~v 198 (369)
T PF02239_consen 163 L--------KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAV 198 (369)
T ss_dssp E--------EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEE
T ss_pred c--------ceeeecccccccccccCcccceeeecccccceeEE
Confidence 1 13344443 34556777777766656555445443
No 53
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=50.14 E-value=3.6e+02 Score=29.06 Aligned_cols=100 Identities=19% Similarity=0.384 Sum_probs=61.4
Q ss_pred EEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCCeeEEEEccCCeEEEEecCCCCc
Q 013457 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGR 103 (442)
Q Consensus 24 is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G~vy~wG~n~~gq 103 (442)
++.|..|-+++. ||.|=.|..+.- . ..+ .+|..++...+.++++|.-+-.|-.|=. +
T Consensus 138 vSVGsQHDMIVn----v~dWr~N~~~as-----------n---kis-s~Vsav~fsEdgSYfvT~gnrHvk~wyl----~ 194 (1080)
T KOG1408|consen 138 VSVGSQHDMIVN----VNDWRVNSSGAS-----------N---KIS-SVVSAVAFSEDGSYFVTSGNRHVKLWYL----Q 194 (1080)
T ss_pred EeeccccceEEE----hhhhhhcccccc-----------c---ccc-eeEEEEEEccCCceeeeeeeeeEEEEEe----e
Confidence 345666666663 566666653210 0 111 3577788888888888877556766621 2
Q ss_pred cCCCCCCCceeeEEec-------ccCCCcEEEEEeCCc----eEEEEEcCCeEEEEeC
Q 013457 104 LGHGNSSDLFTPLPIK-------ALHSLRVKQIACGDS----HCLAVTVEGEVQSWGR 150 (442)
Q Consensus 104 lG~~~~~~~~~p~~v~-------~~~~~~i~~Ia~G~~----h~~~lt~~G~vy~wG~ 150 (442)
.+. .+..|.|+. .+.......|+||.. .+++||..|.+.-|-+
T Consensus 195 ~~~----KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 195 IQS----KYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred ccc----cccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeech
Confidence 111 222333333 234446889999987 8999999999987753
No 54
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=49.52 E-value=20 Score=22.41 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=15.2
Q ss_pred CeEEEEecCCcEEEEeCC
Q 013457 186 EHSVAVAEDGELYGWGWG 203 (442)
Q Consensus 186 ~h~~~Lt~~G~vy~wG~n 203 (442)
-+.++++.+|.||+.|..
T Consensus 15 ~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred EEEEEECCCCCEEEEEee
Confidence 357899999999999964
No 55
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=47.15 E-value=2.5e+02 Score=29.69 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=16.4
Q ss_pred EEecCceEEEEeCCCCEEEEeC
Q 013457 233 VACGWRHTISVSSSGRLYSYGW 254 (442)
Q Consensus 233 I~~G~~~s~~lt~~G~vy~~G~ 254 (442)
+.....+.-+..-++++|+-|-
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CccccccccEEEECCEEEEEec
Confidence 4556666667777899999985
No 56
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=46.22 E-value=4.8e+02 Score=29.43 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=25.1
Q ss_pred CCCCCEEEEEecCCc--eEEEEeCCeEEEEeCC
Q 013457 16 APFRPVLLISAGASH--SVALLSGNIVCSWGRG 46 (442)
Q Consensus 16 ~~~~~i~~is~G~~~--~~~l~~~g~v~~wG~n 46 (442)
.-+..|.+|+....+ .+++++||.+..|=..
T Consensus 424 ~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 424 ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 446789999998888 7999999988777643
No 57
>PHA03098 kelch-like protein; Provisional
Probab=45.16 E-value=3.7e+02 Score=27.80 Aligned_cols=15 Identities=13% Similarity=0.151 Sum_probs=10.9
Q ss_pred EEEEeCCeEEEEeCC
Q 013457 32 VALLSGNIVCSWGRG 46 (442)
Q Consensus 32 ~~l~~~g~v~~wG~n 46 (442)
.++.-++.+|+.|-.
T Consensus 289 ~~~~~~~~lyv~GG~ 303 (534)
T PHA03098 289 GSVVLNNVIYFIGGM 303 (534)
T ss_pred eEEEECCEEEEECCC
Confidence 455677899999943
No 58
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=44.49 E-value=4.3e+02 Score=30.39 Aligned_cols=163 Identities=19% Similarity=0.185 Sum_probs=0.0
Q ss_pred cEEEEEeCCce-EEEEE--cCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEecCCcEEEEe
Q 013457 125 RVKQIACGDSH-CLAVT--VEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWG 201 (442)
Q Consensus 125 ~i~~Ia~G~~h-~~~lt--~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG 201 (442)
.+.+++....| +++++ .||.|-.| |..--.|.+....+...-....-....+..+--|..+.+. ++||.|-...
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW--~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~-t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVW--NLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS-TKDGSVRVLR 1126 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEe--eehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE-cCCCeEEEEE
Q ss_pred CCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceE-----EEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecc
Q 013457 202 WGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHT-----ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEA 276 (442)
Q Consensus 202 ~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s-----~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~ 276 (442)
-+.+ .........-..........++++.+-..+. ++.|..+.+..|+ ....+...+.-..
T Consensus 1127 id~~----~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D----------~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1127 IDHY----NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWD----------TRMRHDAWRLKNQ 1192 (1431)
T ss_pred cccc----ccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEec----------chhhhhHHhhhcC
Q ss_pred cCCCcEEEEEcCCCceEEE--eCCCcEEEe
Q 013457 277 LRESFISQISGGWRHTMAV--TSDGKLYGW 304 (442)
Q Consensus 277 ~~~~~i~~I~~G~~hs~~l--t~~G~vy~w 304 (442)
+..--|++|+.-.....++ |+.|.+-+|
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lW 1222 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLW 1222 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEE
No 59
>PHA02713 hypothetical protein; Provisional
Probab=42.95 E-value=4.2e+02 Score=27.81 Aligned_cols=17 Identities=29% Similarity=0.387 Sum_probs=11.4
Q ss_pred CeEEEEecCCcEEEEeCC
Q 013457 186 EHSVAVAEDGELYGWGWG 203 (442)
Q Consensus 186 ~h~~~Lt~~G~vy~wG~n 203 (442)
.|+++ .-+|+||++|-.
T Consensus 344 ~~~~~-~~~g~IYviGG~ 360 (557)
T PHA02713 344 RFSLA-VIDDTIYAIGGQ 360 (557)
T ss_pred ceeEE-EECCEEEEECCc
Confidence 34444 448999999853
No 60
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=42.38 E-value=2.4e+02 Score=24.86 Aligned_cols=147 Identities=15% Similarity=0.154 Sum_probs=69.4
Q ss_pred CCEEEEEecC--CceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCC--eeEEEEccCCeEE
Q 013457 19 RPVLLISAGA--SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVY 94 (442)
Q Consensus 19 ~~i~~is~G~--~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~--~~~~l~~~~G~vy 94 (442)
..|..++.-. ...++...+|.++.|-..... ....+.. ....+..+..-.+ +.++...+ |.|+
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~-~~i~ 76 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----------LLRTLKG-HTGPVRDVAASADGTYLASGSSD-KTIR 76 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----------cEEEEec-CCcceeEEEECCCCCEEEEEcCC-CeEE
Confidence 4566666544 333444468999999654321 1111111 1123334443333 34444445 9999
Q ss_pred EEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCc-eEEEEEc-CCeEEEEeCCCCCCcCCCCCCCcccceeeec
Q 013457 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS-HCLAVTV-EGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA 172 (442)
Q Consensus 95 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~-h~~~lt~-~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 172 (442)
.|-..... ....+. .....|..+..... ..++... +|.|+.|-....... ..+.
T Consensus 77 i~~~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----------~~~~- 132 (289)
T cd00200 77 LWDLETGE-----------CVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL-----------TTLR- 132 (289)
T ss_pred EEEcCccc-----------ceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE-----------EEec-
Confidence 99654320 111111 11225666665543 3444444 899999865421100 1111
Q ss_pred ccCCcEEEEEeCC-CeEEEEec-CCcEEEEeC
Q 013457 173 FEGVSIKMVAAGA-EHSVAVAE-DGELYGWGW 202 (442)
Q Consensus 173 ~~~~~i~~ia~G~-~h~~~Lt~-~G~vy~wG~ 202 (442)
.....|..+.... ...++... +|.|+.|-.
T Consensus 133 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence 1112355555444 23333333 888988854
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=41.83 E-value=2.8e+02 Score=25.52 Aligned_cols=19 Identities=32% Similarity=0.669 Sum_probs=14.4
Q ss_pred CCCeEEEEecCCcEEEEeC
Q 013457 184 GAEHSVAVAEDGELYGWGW 202 (442)
Q Consensus 184 G~~h~~~Lt~~G~vy~wG~ 202 (442)
...|.+-=.+||.||.|-.
T Consensus 238 sdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred cceeEEeccCCceEEEEEe
Confidence 4456666679999999964
No 62
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=41.42 E-value=3.8e+02 Score=26.81 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=17.7
Q ss_pred EEEEEcCCCceEEE--eCCCcEEEeecC
Q 013457 282 ISQISGGWRHTMAV--TSDGKLYGWGWN 307 (442)
Q Consensus 282 i~~I~~G~~hs~~l--t~~G~vy~wG~n 307 (442)
|.+-..|.+-.++. .+|++||.|-.-
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEcc
Confidence 44555555556666 489999999753
No 63
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=40.86 E-value=5.2e+02 Score=28.26 Aligned_cols=160 Identities=12% Similarity=0.062 Sum_probs=83.4
Q ss_pred CCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEE--EeCCCeEEEEecCCcEEEEeCCCCCCcC
Q 013457 132 GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV--AAGAEHSVAVAEDGELYGWGWGRYGNLG 209 (442)
Q Consensus 132 G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i--a~G~~h~~~Lt~~G~vy~wG~n~~GqlG 209 (442)
-...++++|++|-|-.--...+. +..+..-++..++.+ +...++.+++|++|++|.+-...-= .|
T Consensus 493 ~e~v~VilTk~G~IKr~~~~~~~------------~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP-~G 559 (735)
T TIGR01062 493 KEPVTIILSKMGWVRSAKGHDID------------LSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP-SA 559 (735)
T ss_pred CcceEEEEecCCEEEeccccccc------------hhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC-cC
Confidence 45667889999977654332221 111111123334443 3445568999999999999655421 12
Q ss_pred CCCCCCeeeee--EeeeeCCceEEEEEecCc--eEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEE-
Q 013457 210 LGDRNDRLIPE--KVATVDREKMVMVACGWR--HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ- 284 (442)
Q Consensus 210 ~~~~~~~~~p~--~v~~~~~~~i~~I~~G~~--~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~- 284 (442)
. ..-.|. .+...++.+|+.+.+... +.+++++.|..+..--+++-....+.. .-..++ .+..+..
T Consensus 560 R----~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~RaGK----gvi~Lk--~~d~lv~v 629 (735)
T TIGR01062 560 R----GQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKAGK----ALINLP--ENASVIAP 629 (735)
T ss_pred c----cCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcCCe----EEEEeC--CCCEEEEE
Confidence 1 111222 222335677887776543 477888888776655433322111100 000111 1111221
Q ss_pred -EEcCC-CceEEEeCCCcEEEeecCCCccccc
Q 013457 285 -ISGGW-RHTMAVTSDGKLYGWGWNKFGQVGV 314 (442)
Q Consensus 285 -I~~G~-~hs~~lt~~G~vy~wG~n~~GqLG~ 314 (442)
...+. .+.++++++|++..+-.++.-+++.
T Consensus 630 ~~v~~~dd~V~liT~~GrlLrf~v~EIp~~gR 661 (735)
T TIGR01062 630 LPVNGDSDMIAAITEAGRMLVFPIDDLPELSK 661 (735)
T ss_pred EEEcCCCCEEEEEeCCCcEEEEEHHHCCccCC
Confidence 12233 2577889999999887766554443
No 64
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=40.59 E-value=3.7e+02 Score=26.43 Aligned_cols=73 Identities=11% Similarity=0.107 Sum_probs=37.9
Q ss_pred EEEEEeCCceEEEEEcCCe-EEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCC---------eEEEEecCC
Q 013457 126 VKQIACGDSHCLAVTVEGE-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE---------HSVAVAEDG 195 (442)
Q Consensus 126 i~~Ia~G~~h~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~---------h~~~Lt~~G 195 (442)
+..|..|...-.+++.||+ +|.. ...+-.+-.+...+.. ..+..-....+.+|..+.. +.++|+.||
T Consensus 40 ~g~i~~G~~P~~~~spDg~~lyva-~~~~~R~~~G~~~d~V--~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dg 116 (352)
T TIGR02658 40 LGMTDGGFLPNPVVASDGSFFAHA-STVYSRIARGKRTDYV--EVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDN 116 (352)
T ss_pred EEEEEccCCCceeECCCCCEEEEE-eccccccccCCCCCEE--EEEECccCcEEeEEccCCCchhhccCccceEEECCCC
Confidence 3456666544445888876 5554 3222222233322221 2222222334556665544 389999999
Q ss_pred c-EEEEe
Q 013457 196 E-LYGWG 201 (442)
Q Consensus 196 ~-vy~wG 201 (442)
+ +|+.-
T Consensus 117 k~l~V~n 123 (352)
T TIGR02658 117 KTLLFYQ 123 (352)
T ss_pred CEEEEec
Confidence 6 77664
No 65
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=40.05 E-value=4.1e+02 Score=26.84 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=46.4
Q ss_pred cEEEEEccCCeeEEE--EccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCc--eEEEEEcCCeEEE
Q 013457 72 EIVSVTCGADHTTAY--SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS--HCLAVTVEGEVQS 147 (442)
Q Consensus 72 ~i~~i~~G~~~~~~l--~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~--h~~~lt~~G~vy~ 147 (442)
.+..++....-.+++ +.. |++|+|-.+.---|-.- -.... .|+.+...++ |.+--.+||.|+.
T Consensus 83 ~v~al~s~n~G~~l~ag~i~-g~lYlWelssG~LL~v~----------~aHYQ--~ITcL~fs~dgs~iiTgskDg~V~v 149 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTIS-GNLYLWELSSGILLNVL----------SAHYQ--SITCLKFSDDGSHIITGSKDGAVLV 149 (476)
T ss_pred ceeeeecCCCceEEEeeccc-CcEEEEEeccccHHHHH----------Hhhcc--ceeEEEEeCCCcEEEecCCCccEEE
Confidence 355555544333333 356 99999976542221100 00111 3555554444 4444457899999
Q ss_pred EeCCCCCCcCCCCCCCcccceeeeccc--CCcEEEEEeCCC
Q 013457 148 WGRNQNGQLGLGTTEDSLVPQKLQAFE--GVSIKMVAAGAE 186 (442)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~ia~G~~ 186 (442)
|---+-- ...+...|.++..+. ...|+++.+|..
T Consensus 150 W~l~~lv-----~a~~~~~~~p~~~f~~HtlsITDl~ig~G 185 (476)
T KOG0646|consen 150 WLLTDLV-----SADNDHSVKPLHIFSDHTLSITDLQIGSG 185 (476)
T ss_pred EEEEeec-----ccccCCCccceeeeccCcceeEEEEecCC
Confidence 9632210 001111333344343 235777777655
No 66
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=39.84 E-value=2.9e+02 Score=27.70 Aligned_cols=133 Identities=14% Similarity=0.117 Sum_probs=0.0
Q ss_pred CccccccccccccCCCCCCCEEEEEe-cC---CceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCC--CcEE
Q 013457 1 MAEASAASEAASTTAAPFRPVLLISA-GA---SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDG--HEIV 74 (442)
Q Consensus 1 ~~~~s~a~~~~~~~~~~~~~i~~is~-G~---~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~--~~i~ 74 (442)
|-.||--..+.-+..-....++.++. +. +++.++..||.+|.-|.-+ |.=..-+...+..+..|++ ..|+
T Consensus 318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d----~~vkiwdlks~~~~a~Fpght~~vk 393 (506)
T KOG0289|consen 318 LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPD----GVVKIWDLKSQTNVAKFPGHTGPVK 393 (506)
T ss_pred EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCC----ceEEEEEcCCccccccCCCCCCcee
Q ss_pred EEEccCCeeEEEEccCCe-EEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEE
Q 013457 75 SVTCGADHTTAYSESCMQ-VYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSW 148 (442)
Q Consensus 75 ~i~~G~~~~~~l~~~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~w 148 (442)
.|+.+.+--...+..+.. |.+| +-........+.......+..++.-..-+++......|+..
T Consensus 394 ~i~FsENGY~Lat~add~~V~lw-----------DLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 394 AISFSENGYWLATAADDGSVKLW-----------DLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred EEEeccCceEEEEEecCCeEEEE-----------EehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEE
No 67
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=38.31 E-value=4e+02 Score=26.24 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=69.5
Q ss_pred cEEEEEccCC-eeE-EEEccCC-eEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC-CceEEEEEcCCeEEE
Q 013457 72 EIVSVTCGAD-HTT-AYSESCM-QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-DSHCLAVTVEGEVQS 147 (442)
Q Consensus 72 ~i~~i~~G~~-~~~-~l~~~~G-~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G-~~h~~~lt~~G~vy~ 147 (442)
.+..|..|.. |.. +.+.| | .+|+.+. .|. -..+.......+..|..| ..+.++++.||+...
T Consensus 28 ~~~~i~~~~~~h~~~~~s~D-gr~~yv~~r--dg~-----------vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~ 93 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPD-GRYLYVANR--DGT-----------VSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVY 93 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT--SSEEEEEET--TSE-----------EEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEE
T ss_pred EEEEEcCCCCceeEEEecCC-CCEEEEEcC--CCe-----------EEEEECCcccEEEEEecCCCcceEEEcCCCCEEE
Confidence 4566666544 543 34555 5 4777653 222 233444445567788776 456788999998555
Q ss_pred EeCCCCCCcCCCCCCCcccceeeec--c----cCCcEEEEEeCC---CeEEEEecCCcEEEEeCCCCCCcCCCCCCCeee
Q 013457 148 WGRNQNGQLGLGTTEDSLVPQKLQA--F----EGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLI 218 (442)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~~--~----~~~~i~~ia~G~---~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~ 218 (442)
-++...+++-.-+......-+.+.. . ...++..|.... .+.+.|.+.++||.--...
T Consensus 94 v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d-------------- 159 (369)
T PF02239_consen 94 VANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD-------------- 159 (369)
T ss_dssp EEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT--------------
T ss_pred EEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc--------------
Confidence 4443333333222111111111110 0 123455554422 2556677778888653211
Q ss_pred eeEeeeeCCceEEEEEecCc-eEEEEeCCCCEEEEeCCCCCc
Q 013457 219 PEKVATVDREKMVMVACGWR-HTISVSSSGRLYSYGWSKYGQ 259 (442)
Q Consensus 219 p~~v~~~~~~~i~~I~~G~~-~s~~lt~~G~vy~~G~n~~gq 259 (442)
.....+..+..|.. |=.+++.+|+-|.-+.+....
T Consensus 160 ------~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~ 195 (369)
T PF02239_consen 160 ------PKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK 195 (369)
T ss_dssp ------SSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred ------ccccceeeecccccccccccCcccceeeecccccce
Confidence 01123344444443 667888888876666544333
No 68
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=36.80 E-value=1.5e+02 Score=29.31 Aligned_cols=62 Identities=21% Similarity=0.373 Sum_probs=45.5
Q ss_pred cEEEEEeCCce---EEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEecCCcEEEEe
Q 013457 125 RVKQIACGDSH---CLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWG 201 (442)
Q Consensus 125 ~i~~Ia~G~~h---~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG 201 (442)
.+..+.+++.+ .+++..+|++..|-.+ ..+.++ .....+.+|..-....+|++..|+||++-
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~--------------~Wt~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGN--------------VLKALK-QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCC--------------eeeEcc-CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 34446777775 7788889999999532 223333 24557889998888899999999999886
No 69
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=36.64 E-value=3.5e+02 Score=25.02 Aligned_cols=66 Identities=9% Similarity=0.116 Sum_probs=37.3
Q ss_pred eCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeee--------EeeeeCCceEEEEEecCceEEEEeCCCCEEEEeC
Q 013457 183 AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPE--------KVATVDREKMVMVACGWRHTISVSSSGRLYSYGW 254 (442)
Q Consensus 183 ~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~--------~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~~G~ 254 (442)
--++-+..+..||+|++.|-.. .......|. .+..+.... .......+=.+.|..+|+||.|++
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~-------~~t~E~~P~~~~~~~~~~~~~l~~~~-~~~~~nlYP~~~llPdG~lFi~an 188 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSN-------NPTYEFWPPKGPGPGPVTLPFLSQTS-DTLPNNLYPFVHLLPDGNLFIFAN 188 (243)
T ss_pred CCccccceECCCCCEEEEeCcC-------CCcccccCCccCCCCceeeecchhhh-ccCccccCceEEEcCCCCEEEEEc
Confidence 3467788899999999998433 111112222 111121100 011223344677889999999997
Q ss_pred CC
Q 013457 255 SK 256 (442)
Q Consensus 255 n~ 256 (442)
+.
T Consensus 189 ~~ 190 (243)
T PF07250_consen 189 RG 190 (243)
T ss_pred CC
Confidence 54
No 70
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=33.93 E-value=6.5e+02 Score=27.35 Aligned_cols=121 Identities=16% Similarity=0.193 Sum_probs=62.7
Q ss_pred EEEEEeCCce--EEEEEcCCeEEEEeCCCCCCcCCCCCC-CcccceeeecccCCcEEEEEeCCCeEEEEe--cCCcEEEE
Q 013457 126 VKQIACGDSH--CLAVTVEGEVQSWGRNQNGQLGLGTTE-DSLVPQKLQAFEGVSIKMVAAGAEHSVAVA--EDGELYGW 200 (442)
Q Consensus 126 i~~Ia~G~~h--~~~lt~~G~vy~wG~n~~gqlG~~~~~-~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt--~~G~vy~w 200 (442)
|-+++.++.- ++++...|.=.++|...-|||..=.-. +++..++-..+. +|..++-..+-.++.| +||+|-+|
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECCCCcEEEeccCCCcEEEE
Confidence 3444555433 345555677777777777777642211 112222221222 4666666666555554 78999998
Q ss_pred eCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEEEeCCCCC
Q 013457 201 GWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYG 258 (442)
Q Consensus 201 G~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~~G~n~~g 258 (442)
-..+.-. ..+.. ..-.....++...-.+..+...-||+|-+|--..|-
T Consensus 378 n~~SgfC--------~vTFt--eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 378 NTQSGFC--------FVTFT--EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred eccCceE--------EEEec--cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 5432100 00000 011123445555666666667778888888765543
No 71
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=33.30 E-value=7.2e+02 Score=27.73 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=32.9
Q ss_pred eEEEEeCCeEEEEeCCCCCccCC-CCCCC-cccceeecCCCCCcEEEEEccCCeeEEEEccCCeEEEEec
Q 013457 31 SVALLSGNIVCSWGRGEDGQLGH-GDAED-RLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGW 98 (442)
Q Consensus 31 ~~~l~~~g~v~~wG~n~~gqLG~-g~~~~-~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G~vy~wG~ 98 (442)
-+-+|.|++++.|-.|.....-. ++.+. ...-..+..-.+..+..| .|.+++.+. -++|..|-
T Consensus 95 rcWiT~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i----~hlL~vAT~-~e~~ilgv 159 (1263)
T COG5308 95 RCWITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRI----SHLLFVATE-KEVMILGV 159 (1263)
T ss_pred ceEEEcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhh----hhhhhhhhh-heeeEEEE
Confidence 46789999999999875432211 11111 111111111122222222 477777777 88888874
No 72
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=32.34 E-value=51 Score=21.39 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=11.9
Q ss_pred CCceEEEEeCCeEEEEeC
Q 013457 28 ASHSVALLSGNIVCSWGR 45 (442)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~ 45 (442)
..|+++...++++|++|-
T Consensus 3 ~~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp BS-EEEEE-TTEEEEE--
T ss_pred ceEEEEEEeCCeEEEECC
Confidence 368888888899999983
No 73
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=30.84 E-value=3e+02 Score=22.47 Aligned_cols=65 Identities=12% Similarity=0.245 Sum_probs=36.1
Q ss_pred cEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEE
Q 013457 177 SIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYS 251 (442)
Q Consensus 177 ~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~ 251 (442)
+.+++.|-....+.+..||.|-+-- +......--++.......|.--.+-...-+++++.|++|+
T Consensus 3 R~~~Ly~~~~~~L~I~~~G~V~Gt~----------~~~~~~~ile~~s~~~g~V~ik~~~s~~YLCmn~~G~ly~ 67 (126)
T smart00442 3 RLRQLYCRNGQHLQILPDGTVDGTR----------DESSSFTILEIIAVAVGVVAIKGVASCRYLCMNKCGKLYG 67 (126)
T ss_pred eEEEEEeCCCeEEEEcCCceEeccc----------CCCCcceEEEEEeccCCEEEEEEcccceEEEECCCCCEEE
Confidence 4567777665667777889886332 1111111122222222223322334467789999999997
No 74
>PHA02790 Kelch-like protein; Provisional
Probab=29.42 E-value=2.2e+02 Score=29.20 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=10.4
Q ss_pred EEEeCCeEEEEeCC
Q 013457 33 ALLSGNIVCSWGRG 46 (442)
Q Consensus 33 ~l~~~g~v~~wG~n 46 (442)
+..-+|+||+.|-.
T Consensus 314 ~v~~~~~iYviGG~ 327 (480)
T PHA02790 314 GVPANNKLYVVGGL 327 (480)
T ss_pred EEEECCEEEEECCc
Confidence 34568999999853
No 75
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=29.17 E-value=5.1e+02 Score=24.65 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=11.9
Q ss_pred ceEEEEEcCCeEEEEeCC
Q 013457 134 SHCLAVTVEGEVQSWGRN 151 (442)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n 151 (442)
.|++++ -+++||.+|-.
T Consensus 116 ~~~~~~-~~~~iYv~GG~ 132 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGN 132 (323)
T ss_pred CceEEE-ECCEEEEEeCc
Confidence 455554 47899999864
No 76
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=28.12 E-value=5e+02 Score=24.21 Aligned_cols=82 Identities=20% Similarity=0.296 Sum_probs=41.7
Q ss_pred cceeecCCCCCcEEE-EEccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEe-CCceEEE
Q 013457 61 SPTQLSALDGHEIVS-VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC-GDSHCLA 138 (442)
Q Consensus 61 ~P~~v~~~~~~~i~~-i~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~-G~~h~~~ 138 (442)
.|..+..-.+ .|+. +-|-.+++++-..+++.|-.|-.-..- .-+.+.. +..|+++-. -+.+.+-
T Consensus 135 pp~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt-----------~v~sL~~--~s~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 135 PPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHRTGT-----------EVQSLEF--NSPVTSLEVSQDGRILT 200 (334)
T ss_pred CchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEeccCc-----------EEEEEec--CCCCcceeeccCCCEEE
Confidence 3444443332 3555 457777777764555999999542210 1111111 123333322 2344555
Q ss_pred EEcCCeEEEEeCCCCCCc
Q 013457 139 VTVEGEVQSWGRNQNGQL 156 (442)
Q Consensus 139 lt~~G~vy~wG~n~~gql 156 (442)
+..-+.|-.|-.+.++.|
T Consensus 201 ia~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 201 IAYGSSVKFWDAKSFGLL 218 (334)
T ss_pred EecCceeEEeccccccce
Confidence 555566777877666543
No 77
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=27.66 E-value=7.5e+02 Score=26.10 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=16.9
Q ss_pred EEEcCCCceEEEeCCCcEEEeec
Q 013457 284 QISGGWRHTMAVTSDGKLYGWGW 306 (442)
Q Consensus 284 ~I~~G~~hs~~lt~~G~vy~wG~ 306 (442)
.+.....+.-+..-++++|+-|-
T Consensus 508 ~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 508 PMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred cCccccccccEEEECCEEEEEec
Confidence 34456667767777899999985
No 78
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=25.81 E-value=1.8e+02 Score=28.01 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=35.5
Q ss_pred CCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCc--eEEEEEcCCeEEEEeC
Q 013457 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS--HCLAVTVEGEVQSWGR 150 (442)
Q Consensus 90 ~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~--h~~~lt~~G~vy~wG~ 150 (442)
.|+||+|-... .++...++......+..|+|.+...+ ..+++++|+.||-|-.
T Consensus 328 ~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 328 SGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 39999996422 12224455555666778888887754 4567788999999953
No 79
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=25.39 E-value=3.3e+02 Score=26.56 Aligned_cols=154 Identities=19% Similarity=0.239 Sum_probs=71.5
Q ss_pred EEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCC--------CeeeeeE-eeeeCCceEEEEEecCceEEEEeCCCC-E
Q 013457 180 MVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRN--------DRLIPEK-VATVDREKMVMVACGWRHTISVSSSGR-L 249 (442)
Q Consensus 180 ~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~--------~~~~p~~-v~~~~~~~i~~I~~G~~~s~~lt~~G~-v 249 (442)
.|.+|...-+++..+|+-+.--.-.+-....+... ....|.. |..+...+. .+.-+.+.+.|+.+|+ +
T Consensus 32 mi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~--~~~~~~~~~~ls~dgk~~ 109 (342)
T PF06433_consen 32 MIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA--QVVPYKNMFALSADGKFL 109 (342)
T ss_dssp EEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----BS--GGGEEE-TTSSEE
T ss_pred EeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh--eecccccceEEccCCcEE
Confidence 57788888888888886443221112222222221 1122222 222221133 2234667789988887 6
Q ss_pred EEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEE---------cCCCceEEEeCCCcEEEeecCCCcccccCCCCCc
Q 013457 250 YSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQIS---------GGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDH 320 (442)
Q Consensus 250 y~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~---------~G~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~ 320 (442)
|.+-- +....-+.|..-..+.+..|. .|......+..||.+.....+..|+.- .
T Consensus 110 ~V~N~-----------TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-----~- 172 (342)
T PF06433_consen 110 YVQNF-----------TPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA-----Q- 172 (342)
T ss_dssp EEEEE-----------SSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE-----E-
T ss_pred EEEcc-----------CCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe-----E-
Confidence 66532 111111222221222222222 344445567778888777766665542 1
Q ss_pred ccceEeccCCC-------cEEecCceEEEEEcCCCEEEEe
Q 013457 321 CSPVQVKFPLD-------QISCGWRHTLAVTERQNVFSWG 353 (442)
Q Consensus 321 ~~p~~v~~~~~-------~i~~G~~h~~alt~~g~v~~wG 353 (442)
+...+-.+.. .......+.++++-+|.||.--
T Consensus 173 -~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~d 211 (342)
T PF06433_consen 173 -KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSAD 211 (342)
T ss_dssp -EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEE
T ss_pred -eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEe
Confidence 1112222211 2334556788899999999754
No 80
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=25.37 E-value=6.6e+02 Score=24.70 Aligned_cols=136 Identities=10% Similarity=0.004 Sum_probs=0.0
Q ss_pred CCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCCeeEEEEccCCeEEEEecCCCCccCCC
Q 013457 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHG 107 (442)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~ 107 (442)
..+.++.+.+|.+++.-..+..++-.........| .....+.++.+.+ |+||+.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~--------------~~~~~~vy~~~~~-g~l~al----------- 309 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDF--------------AVDGGRIYLVDQN-DRVYAL----------- 309 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCc--------------EEECCEEEEEcCC-CeEEEE-----------
Q ss_pred CCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCCe
Q 013457 108 NSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEH 187 (442)
Q Consensus 108 ~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h 187 (442)
+...-..--....+.+......+.-+...++.+.+|.||+. +...-..--........-...-.....+
T Consensus 310 d~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~l-----------d~~tG~~~~~~~~~~~~~~s~P~~~~~~ 378 (394)
T PRK11138 310 DTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWI-----------NREDGRFVAQQKVDSSGFLSEPVVADDK 378 (394)
T ss_pred ECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEE-----------ECCCCCEEEEEEcCCCcceeCCEEECCE
Q ss_pred EEEEecCCcEEEE
Q 013457 188 SVAVAEDGELYGW 200 (442)
Q Consensus 188 ~~~Lt~~G~vy~w 200 (442)
.++.+++|+||++
T Consensus 379 l~v~t~~G~l~~~ 391 (394)
T PRK11138 379 LLIQARDGTVYAI 391 (394)
T ss_pred EEEEeCCceEEEE
No 81
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=25.36 E-value=6.5e+02 Score=24.68 Aligned_cols=115 Identities=14% Similarity=0.068 Sum_probs=52.5
Q ss_pred EeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceEEEEeCC-CCEEEEeCCCCCcC
Q 013457 182 AAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSS-GRLYSYGWSKYGQL 260 (442)
Q Consensus 182 a~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~-G~vy~~G~n~~gql 260 (442)
...+..-++++.+|+||..-....+ .....+..+.... .+-....-|...-++++.+ +++|.-... ...-
T Consensus 202 ~~~dg~~~~vs~eG~V~~id~~~~~-------~~~~~~~~~~~~~-~~~~~wrP~g~q~ia~~~dg~~lyV~~~~-~~~~ 272 (352)
T TIGR02658 202 SNKSGRLVWPTYTGKIFQIDLSSGD-------AKFLPAIEAFTEA-EKADGWRPGGWQQVAYHRARDRIYLLADQ-RAKW 272 (352)
T ss_pred EcCCCcEEEEecCCeEEEEecCCCc-------ceecceeeecccc-ccccccCCCcceeEEEcCCCCEEEEEecC-Cccc
Confidence 4445677888888999876421110 0111111111110 0001233444455777755 457763321 0000
Q ss_pred CCCCCCCccceeEecccCCCcEEEEEcC-CCceEEEeCCCcEEEeecC
Q 013457 261 GHGDFKDHLVPCQLEALRESFISQISGG-WRHTMAVTSDGKLYGWGWN 307 (442)
Q Consensus 261 G~~~~~~~~~p~~v~~~~~~~i~~I~~G-~~hs~~lt~~G~vy~wG~n 307 (442)
.+.. ....-..+..-..+.+..|..| .-+.++++.||+.+.+-.|
T Consensus 273 thk~--~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 273 THKT--ASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALS 318 (352)
T ss_pred cccC--CCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeC
Confidence 0000 0011112222233446777776 4568999999985555444
No 82
>PF09081 DUF1921: Domain of unknown function (DUF1921); InterPro: IPR015165 This domain, which is found in a set of prokaryotic amylases, has no known function []. ; PDB: 1QI5_A 1JDC_A 2AMG_A 1QPK_A 1JDD_A 1QI4_A 1JDA_A 1GCY_A 1QI3_A.
Probab=25.32 E-value=76 Score=20.85 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=13.7
Q ss_pred cCCeeEEEEccCCeEEEE
Q 013457 79 GADHTTAYSESCMQVYSW 96 (442)
Q Consensus 79 G~~~~~~l~~~~G~vy~w 96 (442)
+..++.++.+|+|.|-+|
T Consensus 33 sGsfs~a~N~dnG~vRiW 50 (51)
T PF09081_consen 33 SGSFSQAVNEDNGQVRIW 50 (51)
T ss_dssp SS--EEEEEETTTTEEEE
T ss_pred ccchHhhhhccCCcEEee
Confidence 567889999988999888
No 83
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=24.26 E-value=3.9e+02 Score=21.66 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=33.3
Q ss_pred EEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEE-EecCceEEEEeCCCCEEE
Q 013457 180 MVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMV-ACGWRHTISVSSSGRLYS 251 (442)
Q Consensus 180 ~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I-~~G~~~s~~lt~~G~vy~ 251 (442)
++.|-..+.+.+..||+|-+-.+. .+...--++...... ++.| ..-...-+++++.|+||+
T Consensus 2 qLy~~~~~~L~I~~dG~V~Gt~~~----------~~~~s~l~~~s~~~g-~v~i~~v~s~~YLCmn~~G~ly~ 63 (123)
T cd00058 2 QLYCRTGFHLQILPDGTVDGTRDD----------SSSYTILERIAVAVG-VVSIKGVASCRYLCMNKCGKLYG 63 (123)
T ss_pred eEEEcCCeEEEEcCCCcEecccCC----------CCCCceEEEEECCCC-EEEEEEcccceEEEECCCCCEEE
Confidence 344554677888889998754321 111111222222222 2223 223456788999999997
No 84
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=24.22 E-value=1.7e+02 Score=28.15 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=39.0
Q ss_pred EEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCCeeE--EEEccCCeEEEEe
Q 013457 32 VALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTT--AYSESCMQVYSWG 97 (442)
Q Consensus 32 ~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~--~l~~~~G~vy~wG 97 (442)
++....|+||+|--.. .++...++......+..|++.+...+-++ ++.++ +.||-|-
T Consensus 323 a~gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd-~~Vwrwd 381 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD-GTVWRWD 381 (385)
T ss_pred hhccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCC-CcEEEEE
Confidence 3455889999997321 23335667777777788999887776554 44556 8999884
No 85
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=24.15 E-value=1.5e+02 Score=16.82 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=13.3
Q ss_pred eEEEEEcCCeEEEEeCC
Q 013457 135 HCLAVTVEGEVQSWGRN 151 (442)
Q Consensus 135 h~~~lt~~G~vy~wG~n 151 (442)
|.++++.+|+||..-.+
T Consensus 5 ~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSG 21 (28)
T ss_dssp EEEEEETTSEEEEEECC
T ss_pred cEEEEeCCCCEEEEECC
Confidence 67888899999987543
No 86
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=22.99 E-value=4e+02 Score=21.32 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=39.3
Q ss_pred EEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEEE
Q 013457 178 IKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSY 252 (442)
Q Consensus 178 i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~~ 252 (442)
.+++.|-..+.+.+..||.|-+-++.. +..... .+.......|.--.+-...-+++++.|+||+-
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~~-------~~~s~~---~i~~~~~g~V~i~~~~s~~YLcmn~~G~ly~~ 66 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDDN-------SPYSVF---EIHSVGFGVVRIRGVKSCRYLCMNKCGRLYGS 66 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESSTT-------STTGEE---EEEEEETTEEEEEETTTTEEEEEBTTSBEEEE
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCcC-------cceeEE---EEEeccceEEEEEEecceEEEEECCCCeEccc
Confidence 567888778889999999998776431 111111 12222222222223334567999999999984
No 87
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=22.67 E-value=4.5e+02 Score=24.04 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=37.4
Q ss_pred EEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCC--eEEEEecCCcEEEEeC
Q 013457 128 QIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGW 202 (442)
Q Consensus 128 ~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~--h~~~Lt~~G~vy~wG~ 202 (442)
.|.-...-+++.+.+|.||.|-.|.+|++-.- .+ .....-..-|..+.. -.+.-..+|+++.|-.
T Consensus 65 ~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~------~~----s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~ 131 (238)
T KOG2444|consen 65 RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDR------VC----SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNI 131 (238)
T ss_pred eecccCceEEeecccceEEEecCCccchHHHh------hh----cccccceeccccccccceeEEeccCCceeeecc
Confidence 34445566788999999999988877655311 11 111111233445555 3344446788887743
No 88
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=22.64 E-value=1.5e+02 Score=26.95 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=38.3
Q ss_pred EEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCc--eEEEEeCCCCEEEEeC
Q 013457 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWR--HTISVSSSGRLYSYGW 254 (442)
Q Consensus 181 ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~--~s~~lt~~G~vy~~G~ 254 (442)
|.....-.++.+.+|.||+|=+|.+|++-.- +......-..-|..+.. ..+.--.+|+++.|--
T Consensus 66 v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~----------~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~ 131 (238)
T KOG2444|consen 66 VVTASAKLMVGTSDGAVYVFNWNLEGAHSDR----------VCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNI 131 (238)
T ss_pred ecccCceEEeecccceEEEecCCccchHHHh----------hhcccccceeccccccccceeEEeccCCceeeecc
Confidence 4445566788899999999999988776421 11111112233445555 3444456778887753
No 89
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=22.48 E-value=6.3e+02 Score=23.47 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=28.5
Q ss_pred CCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCC-cCCCCCCCcccceee
Q 013457 123 SLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQ-LGLGTTEDSLVPQKL 170 (442)
Q Consensus 123 ~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gq-lG~~~~~~~~~p~~v 170 (442)
+..|-.++.-+.|.+. .-||.||.|-.|..-. ++....-....|...
T Consensus 62 dgpiy~~~f~d~~Lls-~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~ 109 (325)
T KOG0649|consen 62 DGPIYYLAFHDDFLLS-GGDGLVYGWEWNEEEESLATKRLWEVKIPMQV 109 (325)
T ss_pred CCCeeeeeeehhheee-ccCceEEEeeehhhhhhccchhhhhhcCcccc
Confidence 3467777777666543 4569999999887654 443333334444444
No 90
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=22.43 E-value=1.5e+02 Score=22.17 Aligned_cols=34 Identities=12% Similarity=0.287 Sum_probs=25.2
Q ss_pred CCcEEEEEeC-CceEEEEEcCCeEEEEeCCCCCCc
Q 013457 123 SLRVKQIACG-DSHCLAVTVEGEVQSWGRNQNGQL 156 (442)
Q Consensus 123 ~~~i~~Ia~G-~~h~~~lt~~G~vy~wG~n~~gql 156 (442)
+..=..|+|. ....++|++||.+|.-+--+.|++
T Consensus 15 ~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 15 GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 4456789999 889999999999999885545544
No 91
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=21.74 E-value=3.5e+02 Score=26.75 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=41.7
Q ss_pred EEEEEccCCe---eEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEe
Q 013457 73 IVSVTCGADH---TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWG 149 (442)
Q Consensus 73 i~~i~~G~~~---~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG 149 (442)
+..+.++.++ .+++..+ |.+..|-.|..- .++ .....+.+|..-....+|++..|+||.+.
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~-g~l~~w~~~~Wt--------------~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRD-GKINYWDGNVLK--------------ALK-QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEeecCCCcceEEEEEeec-CcEeeecCCeee--------------Ecc-CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 3345666664 5566666 888878543221 122 24557899999899999999999999886
No 92
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=21.27 E-value=1.2e+03 Score=26.18 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=26.9
Q ss_pred cEEecCceEEEEEcCCCEEEEeCCCCCCCCCCCC
Q 013457 332 QISCGWRHTLAVTERQNVFSWGRGTNGQLGHGES 365 (442)
Q Consensus 332 ~i~~G~~h~~alt~~g~v~~wG~n~~gqLG~g~~ 365 (442)
+|+......++...+|.|-.|=.+...|.-.-++
T Consensus 319 DiSsn~~alafgd~~g~v~~wa~~~~P~Fn~~s~ 352 (1118)
T KOG1275|consen 319 DISSNGDALAFGDHEGHVNLWADRPQPQFNEYSR 352 (1118)
T ss_pred EecCCCceEEEecccCcEeeecCCCCCccCCCcc
Confidence 7777777777888889999999888888865443
No 93
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=21.20 E-value=1.4e+02 Score=22.28 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=24.4
Q ss_pred cEEEEEeC-CCeEEEEecCCcEEEEeCCCCCCc
Q 013457 177 SIKMVAAG-AEHSVAVAEDGELYGWGWGRYGNL 208 (442)
Q Consensus 177 ~i~~ia~G-~~h~~~Lt~~G~vy~wG~n~~Gql 208 (442)
.=..|+|. ....++|++||.+|.-+--..|.+
T Consensus 17 tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 17 TSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 45679999 889999999999999886555543
No 94
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=20.86 E-value=1.3e+03 Score=26.32 Aligned_cols=130 Identities=6% Similarity=-0.047 Sum_probs=68.8
Q ss_pred CCCEEEEEec--CCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccce--eecCC--CCCcEEEEEccCC-----eeEEE
Q 013457 18 FRPVLLISAG--ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPT--QLSAL--DGHEIVSVTCGAD-----HTTAY 86 (442)
Q Consensus 18 ~~~i~~is~G--~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~--~v~~~--~~~~i~~i~~G~~-----~~~~l 86 (442)
.+.+..+... .++.+++|+.|+||..=... +-.+.....-.|. .+..+ ++.+|+.+.+-.+ +.+++
T Consensus 551 ~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~---IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~ 627 (957)
T PRK13979 551 GDFNKFLIQSNTKDTLLIFTDKGNMYQIKGIN---IPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFI 627 (957)
T ss_pred CCceEEEEEEcCCCEEEEEECCCeEEEEEeee---CCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEE
Confidence 4555555544 45677889999999543211 1111101111111 11111 3567777666533 35777
Q ss_pred EccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCC-----ceEEEEEcCCeEEEEeCCCCCCcCC
Q 013457 87 SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-----SHCLAVTVEGEVQSWGRNQNGQLGL 158 (442)
Q Consensus 87 ~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~-----~h~~~lt~~G~vy~wG~n~~gqlG~ 158 (442)
|.+ |.+.-.-..++-.. ...-..++.-.+..++.+.... .+.+++|++|.+.-|-.+.--.+|.
T Consensus 628 Tk~-G~VKrt~L~ef~~~-------r~~~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR 696 (957)
T PRK13979 628 TDS-GGIKKTSLDKFVTN-------YTKLMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDR 696 (957)
T ss_pred ECC-CeEEEEehhhcccc-------ccceEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 777 98887754433211 1112233333455666654432 4589999999988887655444443
Done!