Query 013457
Match_columns 442
No_of_seqs 482 out of 2346
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 10:56:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013457.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013457hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 1.2E-82 4.2E-87 635.7 47.4 394 12-405 9-406 (406)
2 3kci_A Probable E3 ubiquitin-p 100.0 6.2E-73 2.1E-77 562.6 35.4 355 23-378 5-367 (389)
3 3mvd_K Regulator of chromosome 100.0 6.9E-71 2.4E-75 554.4 38.2 369 12-390 17-408 (423)
4 1a12_A RCC1, regulator of chro 100.0 4.8E-70 1.7E-74 546.3 37.6 359 23-388 12-397 (413)
5 3of7_A Regulator of chromosome 100.0 4.4E-69 1.5E-73 547.9 34.2 370 16-389 7-439 (473)
6 3kci_A Probable E3 ubiquitin-p 100.0 1.6E-67 5.6E-72 523.6 37.6 329 18-347 52-388 (389)
7 4d9s_A UVB-resistance protein 100.0 8.5E-65 2.9E-69 506.8 41.6 334 71-407 16-358 (406)
8 1a12_A RCC1, regulator of chro 100.0 2.2E-64 7.6E-69 505.3 39.0 332 11-349 51-412 (413)
9 3mvd_K Regulator of chromosome 100.0 8.1E-63 2.8E-67 495.7 42.7 330 10-348 66-420 (423)
10 3of7_A Regulator of chromosome 100.0 5.3E-62 1.8E-66 495.8 40.5 323 17-345 65-449 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 6.7E-53 2.3E-57 399.4 28.3 260 12-350 17-276 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 4E-52 1.4E-56 394.1 28.2 251 38-362 2-252 (282)
13 1p22_A F-BOX/WD-repeat protein 97.1 0.24 8.2E-06 48.2 35.9 278 18-356 133-414 (435)
14 1k3i_A Galactose oxidase precu 96.5 0.38 1.3E-05 49.9 22.8 69 289-358 457-533 (656)
15 2ovr_B FBW7, F-BOX/WD repeat p 96.3 0.91 3.1E-05 44.0 37.1 269 21-355 122-390 (445)
16 2zwa_A Leucine carboxyl methyl 95.9 1.3 4.5E-05 46.2 23.0 18 237-254 598-615 (695)
17 4gbf_A Phikz131; 7-bladed beta 95.8 0.022 7.6E-07 50.5 7.2 67 281-356 310-376 (400)
18 2ovr_B FBW7, F-BOX/WD repeat p 95.3 2.2 7.6E-05 41.2 34.2 229 17-307 158-390 (445)
19 4gbf_A Phikz131; 7-bladed beta 95.2 0.033 1.1E-06 49.4 6.4 71 125-208 310-380 (400)
20 1p22_A F-BOX/WD-repeat protein 95.2 2.4 8.1E-05 40.9 32.5 229 72-354 135-363 (435)
21 2zwa_A Leucine carboxyl methyl 93.6 7.9 0.00027 40.3 25.1 63 133-202 441-508 (695)
22 3no0_A DNA gyrase subunit A; D 93.4 4.5 0.00015 36.9 22.1 217 17-261 22-251 (276)
23 1gxr_A ESG1, transducin-like e 92.7 5.6 0.00019 36.0 34.5 274 24-355 7-295 (337)
24 3v7d_B Cell division control p 92.6 7.6 0.00026 37.4 34.7 239 21-308 125-381 (464)
25 1k3i_A Galactose oxidase precu 92.5 11 0.00037 38.8 21.2 56 135-202 246-305 (656)
26 3no0_A DNA gyrase subunit A; D 90.2 10 0.00036 34.4 21.6 205 80-312 35-250 (276)
27 4aez_A CDC20, WD repeat-contai 89.9 13 0.00045 35.0 32.9 145 24-203 99-247 (401)
28 3zwl_B Eukaryotic translation 88.6 14 0.00049 33.6 31.1 200 18-254 32-247 (369)
29 3k26_A Polycomb protein EED; W 86.8 18 0.00062 32.9 29.1 154 18-203 18-191 (366)
30 1sq9_A Antiviral protein SKI8; 86.5 21 0.0007 33.2 30.0 251 16-308 14-322 (397)
31 3odt_A Protein DOA1; ubiquitin 86.0 18 0.00062 32.1 30.5 185 71-307 105-295 (313)
32 1gxr_A ESG1, transducin-like e 85.5 20 0.00068 32.1 35.8 189 71-308 98-296 (337)
33 3odt_A Protein DOA1; ubiquitin 84.7 21 0.00071 31.6 34.1 268 16-355 16-295 (313)
34 3sfz_A APAF-1, apoptotic pepti 83.9 56 0.0019 36.0 24.9 219 83-353 1018-1246(1249)
35 4aez_A CDC20, WD repeat-contai 82.2 33 0.0011 32.1 29.6 147 74-255 97-247 (401)
36 3mmy_A MRNA export factor; mRN 82.0 29 0.001 31.4 19.5 151 122-308 38-199 (368)
37 3uc1_A DNA gyrase subunit A; D 81.8 33 0.0011 31.8 24.1 226 18-261 41-284 (327)
38 3mmy_A MRNA export factor; mRN 81.4 31 0.0011 31.2 29.3 192 71-308 40-247 (368)
39 3uc1_A DNA gyrase subunit A; D 79.9 38 0.0013 31.4 23.1 220 76-312 49-283 (327)
40 1sq9_A Antiviral protein SKI8; 79.6 39 0.0013 31.2 24.7 110 123-254 186-320 (397)
41 1pgu_A Actin interacting prote 78.0 56 0.0019 32.2 30.1 110 177-308 448-572 (615)
42 3v7d_B Cell division control p 75.7 56 0.0019 31.0 35.6 242 18-308 162-421 (464)
43 4a11_B DNA excision repair pro 75.5 50 0.0017 30.4 32.3 296 17-357 42-366 (408)
44 1r5m_A SIR4-interacting protei 75.4 51 0.0017 30.4 25.1 106 125-254 249-359 (425)
45 1xip_A Nucleoporin NUP159; bet 74.1 56 0.0019 31.1 13.7 109 60-200 79-187 (388)
46 3i2n_A WD repeat-containing pr 72.6 54 0.0019 29.5 29.3 238 18-308 18-291 (357)
47 3mkq_A Coatomer beta'-subunit; 70.8 1E+02 0.0034 31.8 27.4 190 19-255 56-258 (814)
48 1r5m_A SIR4-interacting protei 67.3 77 0.0026 29.1 29.0 237 20-307 110-360 (425)
49 1xip_A Nucleoporin NUP159; bet 67.2 35 0.0012 32.6 10.5 64 126-202 90-153 (388)
50 1wp5_A Topoisomerase IV; broke 67.2 79 0.0027 29.2 24.6 225 76-313 46-282 (323)
51 2aq5_A Coronin-1A; WD40 repeat 66.2 84 0.0029 29.2 28.2 154 24-202 40-205 (402)
52 3sfz_A APAF-1, apoptotic pepti 65.8 1.6E+02 0.0055 32.2 22.5 108 72-204 1046-1158(1249)
53 3zwl_B Eukaryotic translation 65.8 76 0.0026 28.5 25.3 200 71-307 33-248 (369)
54 4g56_B MGC81050 protein; prote 65.6 83 0.0028 28.9 33.9 190 72-306 96-299 (357)
55 1suu_A DNA gyrase subunit A; t 65.5 83 0.0028 28.8 22.9 216 76-306 54-281 (312)
56 4gqb_B Methylosome protein 50; 64.8 86 0.0029 28.8 30.4 190 72-306 84-287 (344)
57 3jrp_A Fusion protein of prote 64.4 82 0.0028 28.4 32.9 242 18-307 11-286 (379)
58 3gre_A Serine/threonine-protei 63.6 97 0.0033 29.0 22.6 117 18-151 111-244 (437)
59 1pgu_A Actin interacting prote 62.2 1.2E+02 0.0042 29.6 32.7 187 19-254 161-364 (615)
60 3k26_A Polycomb protein EED; W 61.7 90 0.0031 28.0 29.3 153 71-255 19-191 (366)
61 1suu_A DNA gyrase subunit A; t 61.3 99 0.0034 28.3 23.7 226 17-257 45-284 (312)
62 3vl1_A 26S proteasome regulato 60.9 1E+02 0.0036 28.4 30.2 141 23-202 63-210 (420)
63 1yfq_A Cell cycle arrest prote 60.5 92 0.0032 27.7 26.3 253 16-307 9-281 (342)
64 3mkq_A Coatomer beta'-subunit; 60.2 1.6E+02 0.0054 30.3 30.3 231 19-308 14-259 (814)
65 2aq5_A Coronin-1A; WD40 repeat 59.7 1.1E+02 0.0038 28.3 27.4 152 76-254 40-205 (402)
66 1q7f_A NHL, brain tumor CG1071 59.7 89 0.003 27.2 24.8 16 239-254 210-225 (286)
67 3vgz_A Uncharacterized protein 59.5 98 0.0034 27.7 27.5 15 339-353 317-332 (353)
68 3jro_A Fusion protein of prote 59.2 1.7E+02 0.0057 30.3 29.3 199 18-255 9-237 (753)
69 3jrp_A Fusion protein of prote 58.5 1E+02 0.0036 27.7 30.2 196 72-308 13-240 (379)
70 2xn4_A Kelch-like protein 2; s 58.1 28 0.00096 31.2 7.8 16 186-202 197-212 (302)
71 3ii7_A Kelch-like protein 7; p 57.3 1E+02 0.0036 27.3 17.5 17 185-202 93-109 (306)
72 3fvz_A Peptidyl-glycine alpha- 55.3 1.2E+02 0.0041 27.4 20.8 21 27-47 24-44 (329)
73 2uvk_A YJHT; unknown function, 55.2 1.2E+02 0.0043 27.5 17.4 17 133-150 110-126 (357)
74 2xyi_A Probable histone-bindin 54.7 1.4E+02 0.0048 28.0 27.3 200 82-307 196-409 (430)
75 3gre_A Serine/threonine-protei 54.4 1.4E+02 0.0048 27.9 18.3 110 18-151 168-291 (437)
76 1yfq_A Cell cycle arrest prote 54.0 1.2E+02 0.0041 26.9 26.4 203 72-309 13-226 (342)
77 2z2n_A Virginiamycin B lyase; 52.0 1.2E+02 0.004 26.3 23.7 16 239-254 186-201 (299)
78 3l6v_A GYRA, DNA gyrase subuni 51.4 1.6E+02 0.0055 27.7 24.8 122 76-205 53-181 (370)
79 2vpj_A Kelch-like protein 12; 49.1 1.4E+02 0.0048 26.3 14.3 17 133-150 151-167 (301)
80 3no2_A Uncharacterized protein 48.9 1.4E+02 0.0048 26.3 25.5 76 173-254 85-163 (276)
81 1wp5_A Topoisomerase IV; broke 47.2 1.7E+02 0.0059 26.8 25.8 231 16-261 36-282 (323)
82 1l0q_A Surface layer protein; 47.1 1.7E+02 0.0057 26.7 19.9 27 72-98 75-103 (391)
83 1zi0_A DNA gyrase subunit A; b 46.3 1.7E+02 0.0058 26.5 25.5 224 17-257 40-278 (307)
84 2qc5_A Streptogramin B lactona 43.6 1.6E+02 0.0054 25.4 24.0 16 239-254 191-206 (300)
85 3jro_A Fusion protein of prote 42.7 3E+02 0.01 28.3 27.9 196 72-308 11-238 (753)
86 4g56_B MGC81050 protein; prote 42.6 2E+02 0.0068 26.2 30.8 189 72-309 141-344 (357)
87 2pm9_A Protein WEB1, protein t 41.9 2E+02 0.007 26.2 21.3 202 17-254 66-292 (416)
88 1rwi_B Serine/threonine-protei 40.0 1.7E+02 0.0059 24.8 13.3 16 239-254 237-252 (270)
89 1zi0_A DNA gyrase subunit A; b 39.2 2.2E+02 0.0075 25.8 24.2 215 76-308 49-277 (307)
90 3i2n_A WD repeat-containing pr 38.1 2.1E+02 0.0072 25.3 29.8 199 18-255 65-290 (357)
91 2z2n_A Virginiamycin B lyase; 37.6 2E+02 0.0067 24.7 21.5 17 238-254 143-159 (299)
92 3l6v_A GYRA, DNA gyrase subuni 37.4 2.6E+02 0.009 26.2 24.7 133 18-158 45-186 (370)
93 3q7m_A Lipoprotein YFGL, BAMB; 37.4 2.4E+02 0.0082 25.7 12.0 136 133-304 239-374 (376)
94 1zvt_A Topoisomerase IV subuni 37.3 2.2E+02 0.0074 25.1 15.2 157 135-313 4-168 (256)
95 3lrv_A PRE-mRNA-splicing facto 36.8 2.3E+02 0.0079 25.3 16.0 231 81-352 49-288 (343)
96 3no2_A Uncharacterized protein 36.5 2.2E+02 0.0075 25.0 29.8 165 123-314 87-267 (276)
97 2woz_A Kelch repeat and BTB do 36.2 2.3E+02 0.0079 25.2 12.3 16 134-150 151-166 (318)
98 4a11_B DNA excision repair pro 35.5 2.5E+02 0.0085 25.3 29.9 250 17-309 98-366 (408)
99 4asc_A Kelch repeat and BTB do 34.3 2.5E+02 0.0085 24.9 14.9 202 78-305 34-250 (315)
100 3sjl_D Methylamine dehydrogena 33.9 3.1E+02 0.01 25.9 13.9 64 183-253 187-253 (386)
101 3p6j_A De novo designed beta-t 33.8 1.8E+02 0.0062 23.2 14.1 107 174-303 28-138 (142)
102 3p6j_A De novo designed beta-t 33.4 1.8E+02 0.0063 23.1 13.1 106 123-251 29-138 (142)
103 2vpj_A Kelch-like protein 12; 32.6 2.5E+02 0.0087 24.5 16.2 18 133-151 104-121 (301)
104 1l0q_A Surface layer protein; 32.1 2.9E+02 0.0098 25.0 16.9 10 141-150 178-187 (391)
105 2woz_A Kelch repeat and BTB do 31.6 2.8E+02 0.0094 24.6 12.4 17 185-202 101-117 (318)
106 1q7f_A NHL, brain tumor CG1071 29.8 2.7E+02 0.0091 23.9 21.1 16 187-202 210-225 (286)
107 2pm9_A Protein WEB1, protein t 28.9 3.3E+02 0.011 24.7 26.1 245 71-357 68-338 (416)
108 2ymu_A WD-40 repeat protein; u 28.6 4E+02 0.014 25.6 27.4 225 22-304 350-576 (577)
109 3v9f_A Two-component system se 28.0 5.1E+02 0.017 26.6 20.8 17 339-355 631-647 (781)
110 1zvu_A Topoisomerase IV subuni 27.9 4.2E+02 0.014 27.3 11.1 123 130-261 511-638 (716)
111 3v9f_A Two-component system se 27.4 5.2E+02 0.018 26.5 20.2 16 339-354 586-601 (781)
112 4a2l_A BT_4663, two-component 25.9 5.6E+02 0.019 26.3 22.0 17 339-355 634-650 (795)
113 1rwi_B Serine/threonine-protei 25.8 3E+02 0.01 23.2 21.7 16 291-306 237-252 (270)
114 3vl1_A 26S proteasome regulato 25.7 3.8E+02 0.013 24.4 33.8 223 29-308 110-365 (420)
115 1zvt_A Topoisomerase IV subuni 21.8 4E+02 0.014 23.3 16.4 129 123-261 32-168 (256)
116 3q7x_A De novo designed beta-t 21.0 3E+02 0.01 21.4 12.7 104 178-303 8-113 (132)
117 1erj_A Transcriptional repress 20.9 4.8E+02 0.016 23.8 28.2 164 72-254 167-339 (393)
118 3ii7_A Kelch-like protein 7; p 20.6 4.3E+02 0.015 23.1 16.3 16 186-202 193-208 (306)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.2e-82 Score=635.67 Aligned_cols=394 Identities=83% Similarity=1.407 Sum_probs=365.1
Q ss_pred ccCCCCCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCCeeEEEEccCC
Q 013457 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCM 91 (442)
Q Consensus 12 ~~~~~~~~~i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G 91 (442)
++..+++.+|++|+||..|+++|+++|+||+||+|.+||||+++.+++..|+++..+.+.+|++|+||..|+++|+++.+
T Consensus 9 ~~v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg 88 (406)
T 4d9s_A 9 DEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGM 88 (406)
T ss_dssp ------CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTT
T ss_pred ccCCCCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCC
Confidence 44567788999999999999999999999999999999999999999999999999988899999999999999999834
Q ss_pred eEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeee
Q 013457 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (442)
Q Consensus 92 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 171 (442)
+||+||.|.+||||.++..+...|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++.
T Consensus 89 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 89 EVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEE
Q 013457 172 AFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYS 251 (442)
Q Consensus 172 ~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~ 251 (442)
.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+...+|++|+||.+|+++|+++|+||+
T Consensus 169 ~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~ 248 (406)
T 4d9s_A 169 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYT 248 (406)
T ss_dssp GGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEE
T ss_pred ccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999988888899999999999999999999999
Q ss_pred EeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCCCcccccCCCCCcccceEeccCC-
Q 013457 252 YGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL- 330 (442)
Q Consensus 252 ~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~- 330 (442)
||.|.+||||.++..+...|++++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++..+...|+++..+.
T Consensus 249 wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 328 (406)
T 4d9s_A 249 YGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDD 328 (406)
T ss_dssp EECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGG
T ss_pred eeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCC
Confidence 9999999999999989999999999999899999999999999999999999999999999999998888999987553
Q ss_pred ---CcEEecCceEEEEEcCCCEEEEeCCCCCCCCCCCCCCCCCcEEeccCCCCCCceeEeecccccCCCCCcccCCCC
Q 013457 331 ---DQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSE 405 (442)
Q Consensus 331 ---~~i~~G~~h~~alt~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
.+|+||.+|++||+++|+||+||+|++||||+|+..++..|..|+.|..++....+++.+......++.|++++|
T Consensus 329 ~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~g~~~~~~~~~~~~~~~~~~w~~~~~ 406 (406)
T 4d9s_A 329 QKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQHIESSNIDPSSGKSWVSPAE 406 (406)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGCSCSSCCCCCBCTTSCTTC---------
T ss_pred CcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeecCCCceeeEEEecccccccCccccCcCC
Confidence 389999999999999999999999999999999999999999999999999999999999999999999998875
No 2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.2e-73 Score=562.62 Aligned_cols=355 Identities=30% Similarity=0.578 Sum_probs=321.3
Q ss_pred EEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCCeeEEEEccCCeEEEEecCCCC
Q 013457 23 LISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFG 102 (442)
Q Consensus 23 ~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G~vy~wG~n~~g 102 (442)
++..-..+.++|++||+||+||+|.+||||.++......|+++..+...+|++|+||..|+++|+++ |+||+||.|.+|
T Consensus 5 ~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~-G~v~~wG~n~~G 83 (389)
T 3kci_A 5 HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTAD-GKLYATGYGAGG 83 (389)
T ss_dssp ----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETT-SCEEEEECCGGG
T ss_pred ccccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCC-CcEEEEECCCCC
Confidence 3444567889999999999999999999999988888999999888878899999999999999999 999999999999
Q ss_pred ccCCCCCCCceeeEEecccCCCc--EEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEE
Q 013457 103 RLGHGNSSDLFTPLPIKALHSLR--VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180 (442)
Q Consensus 103 qlG~~~~~~~~~p~~v~~~~~~~--i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ 180 (442)
|||.++......|.++..+.+.. +++|+||..|+++|+++|+||+||.|.+||||.+.......|.++..+.+.+|++
T Consensus 84 qLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ 163 (389)
T 3kci_A 84 RLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVD 163 (389)
T ss_dssp TTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEE
T ss_pred CCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEE
Confidence 99999998889999999887664 4788999999999999999999999999999999998888999999999999999
Q ss_pred EEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecC--ceEEEEeCCCCEEEEeCCCCC
Q 013457 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGW--RHTISVSSSGRLYSYGWSKYG 258 (442)
Q Consensus 181 ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~--~~s~~lt~~G~vy~~G~n~~g 258 (442)
|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+...+|++|+||. .|+++|+++|+||+||.|.+|
T Consensus 164 va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~G 243 (389)
T 3kci_A 164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYG 243 (389)
T ss_dssp EEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGG
T ss_pred EEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCC
Confidence 999999999999999999999999999999999999999999998889999999995 899999999999999999999
Q ss_pred cCCCCCCCCccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCCCcccccCCCCCcccceEeccCC----CcEE
Q 013457 259 QLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL----DQIS 334 (442)
Q Consensus 259 qlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~----~~i~ 334 (442)
|||.+.......|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++......|+++..+. .+|+
T Consensus 244 qLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia 323 (389)
T 3kci_A 244 KLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIA 323 (389)
T ss_dssp TTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEE
T ss_pred CCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEE
Confidence 999999888889999999998889999999999999999999999999999999999988888999998653 3899
Q ss_pred ecCceEEEEEcCCCEEEEeCCCCCCCCCCCCCCCCCcEEeccCC
Q 013457 335 CGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLS 378 (442)
Q Consensus 335 ~G~~h~~alt~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~ 378 (442)
||.+|++||+++|+||+||.|++||||+|+..++..|+.|+.|.
T Consensus 324 ~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~ 367 (389)
T 3kci_A 324 TGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQ 367 (389)
T ss_dssp ECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred eccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccC
Confidence 99999999999999999999999999999999999999998775
No 3
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=6.9e-71 Score=554.35 Aligned_cols=369 Identities=27% Similarity=0.404 Sum_probs=312.4
Q ss_pred ccCCCCCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCC-CCcccceeecCCCCCcEEEEEccCCeeEEEEccC
Q 013457 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDA-EDRLSPTQLSALDGHEIVSVTCGADHTTAYSESC 90 (442)
Q Consensus 12 ~~~~~~~~~i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~-~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~ 90 (442)
..+.++..++.+|++|..|+++|+++|+||+||.|.+||||.++. .....|+++..+. +|++|+||..|+++|+++
T Consensus 17 ~~~~~~~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~- 93 (423)
T 3mvd_K 17 AEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKS- 93 (423)
T ss_dssp ------------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETT-
T ss_pred CCCCCccceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC--CceEEeeCCCeEEEEeCC-
Confidence 345777889999999999999999999999999999999999875 4577899998887 599999999999999999
Q ss_pred CeEEEEecCCCCccCCCCCCC--ceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeC--CCCCCcCCCCCCCccc
Q 013457 91 MQVYSWGWGDFGRLGHGNSSD--LFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGR--NQNGQLGLGTTEDSLV 166 (442)
Q Consensus 91 G~vy~wG~n~~gqlG~~~~~~--~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~ 166 (442)
|+||+||.|.+||||.+.... ...|.++.. ..+|++|+||..|+++|+++|+||+||. |.+||||.+.......
T Consensus 94 G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~--~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~ 171 (423)
T 3mvd_K 94 GDIYSFGCNDEGALGRDTSEDGSESKPDLIDL--PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRT 171 (423)
T ss_dssp SCEEEEECCSSSTTCSCCCSTTSSSSCEECCC--SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEE
T ss_pred CeEEEeECCCCcCCCCCCcCCccccCCeEEcC--CCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCce
Confidence 999999999999999988754 456776664 3489999999999999999999999998 9999999988776655
Q ss_pred ceeeecccCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCC-----------CCeeeeeEeeeeCCceEEEEEe
Q 013457 167 PQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDR-----------NDRLIPEKVATVDREKMVMVAC 235 (442)
Q Consensus 167 p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~-----------~~~~~p~~v~~~~~~~i~~I~~ 235 (442)
|.+ .+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.. .....|.++......+|++|+|
T Consensus 172 p~~--~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~ 249 (423)
T 3mvd_K 172 PID--LMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWA 249 (423)
T ss_dssp EEE--SSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEE
T ss_pred eeE--ecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEE
Confidence 544 456778999999999999999999999999999999998764 2445788888777789999999
Q ss_pred cCceEEEE-eCCCCEEEEeCCCCCcCCCCCCCC--ccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCCCccc
Q 013457 236 GWRHTISV-SSSGRLYSYGWSKYGQLGHGDFKD--HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQV 312 (442)
Q Consensus 236 G~~~s~~l-t~~G~vy~~G~n~~gqlG~~~~~~--~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqL 312 (442)
|.+|++++ +++|+||+||.|.+||||.+.... ...|.++. + .+|++|+||.+|+++|+++|+||+||.|.+|||
T Consensus 250 g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-~--~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqL 326 (423)
T 3mvd_K 250 TNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE-L--KDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRL 326 (423)
T ss_dssp ETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC-C--CSEEEEEECSSEEEEEETTCCEEEEECCGGGTT
T ss_pred CCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC-C--CCeEEEEcccCeEEEEeCCCcEEEEECCCCCCC
Confidence 99999999 699999999999999999955433 34566655 3 359999999999999999999999999999999
Q ss_pred ccCCCCC-cccceEeccCC---CcEEecCceEEEEEcCCCEEEEeCCCCCCCCCCCCCCCCCcEEeccCCCCCCceeEee
Q 013457 313 GVGDNVD-HCSPVQVKFPL---DQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIA 388 (442)
Q Consensus 313 G~g~~~~-~~~p~~v~~~~---~~i~~G~~h~~alt~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~~~~~~~~~~~ 388 (442)
|.++..+ ...|.++..+. .+|+||.+|++||+++|+||+||.|++||||+|+..++..|+.|..+...+.....++
T Consensus 327 G~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~~~v~~va 406 (423)
T 3mvd_K 327 GLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLAS 406 (423)
T ss_dssp CSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCSTTTTTCCEEEEE
T ss_pred CCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeCcccCCCEEEEEE
Confidence 9998766 46788887654 3899999999999999999999999999999999999999999987655666666655
Q ss_pred cc
Q 013457 389 SS 390 (442)
Q Consensus 389 ~~ 390 (442)
..
T Consensus 407 ~G 408 (423)
T 3mvd_K 407 GG 408 (423)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=4.8e-70 Score=546.33 Aligned_cols=359 Identities=32% Similarity=0.515 Sum_probs=310.9
Q ss_pred EEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCC-cccceeecCCCCCcEEEEEccCCeeEEEEccCCeEEEEecCCC
Q 013457 23 LISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED-RLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDF 101 (442)
Q Consensus 23 ~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~-~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G~vy~wG~n~~ 101 (442)
+.+.+..|+++|+++|+||+||.|.+||||+++... ...|+++..+ .+|++|+||..|+++|+++ |+||+||.|.+
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~-G~v~~wG~n~~ 88 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKS-GQVYSFGCNDE 88 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETT-SCEEEEECCTT
T ss_pred hhhhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCC-CCEEEEECCCC
Confidence 556678999999999999999999999999998754 6789988755 4899999999999999999 99999999999
Q ss_pred CccCCCCCC--CceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeC--CCCCCcCCCCCCCc-ccceeeecccCC
Q 013457 102 GRLGHGNSS--DLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGR--NQNGQLGLGTTEDS-LVPQKLQAFEGV 176 (442)
Q Consensus 102 gqlG~~~~~--~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~-~~p~~v~~~~~~ 176 (442)
||||.+... ....|.++.. ..+|++|+||..|+++|+++|+||+||. |.+||||.+..... ..|.++ +...
T Consensus 89 GqLG~~~~~~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~ 164 (413)
T 1a12_A 89 GALGRDTSVEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDV 164 (413)
T ss_dssp STTCSCCCSTTGGGSCEECCC--CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSS
T ss_pred CCCCCCCCCCccccCCeEecC--CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCC
Confidence 999998763 3557777743 3489999999999999999999999998 99999998876543 347666 4566
Q ss_pred cEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCC-----------eeeeeEeeee-----CCceEEEEEecCceE
Q 013457 177 SIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND-----------RLIPEKVATV-----DREKMVMVACGWRHT 240 (442)
Q Consensus 177 ~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~-----------~~~p~~v~~~-----~~~~i~~I~~G~~~s 240 (442)
+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|..+... ...+|++|+||.+|+
T Consensus 165 ~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs 244 (413)
T 1a12_A 165 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFT 244 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEE
T ss_pred CEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEE
Confidence 899999999999999999999999999999999875321 2456555443 346899999999999
Q ss_pred EEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCC--CcEEEEEcCCCceEEEeCCCcEEEeecCCCcccccC-CC
Q 013457 241 ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRE--SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVG-DN 317 (442)
Q Consensus 241 ~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~--~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG~g-~~ 317 (442)
++|+++|+||+||.|.+||||.+.......|+++..+.+ .+|++|+||.+|+++|+++|+||+||.|.+||||.+ +.
T Consensus 245 ~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~ 324 (413)
T 1a12_A 245 FAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGA 324 (413)
T ss_dssp EEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTC
T ss_pred EEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCC
Confidence 999999999999999999999999888889999998877 679999999999999999999999999999999998 45
Q ss_pred CCcccceEeccCC--CcEEecCceEEEEEcCCCEEEEeCCCCCCCCCCCCCCCCCcEEeccCCCCCCceeEee
Q 013457 318 VDHCSPVQVKFPL--DQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIA 388 (442)
Q Consensus 318 ~~~~~p~~v~~~~--~~i~~G~~h~~alt~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~~~~~~~~~~~ 388 (442)
.....|++|+.+. .+|+||.+|++||+++|+||+||.|++||||+|+..++..|+.|......+.....+.
T Consensus 325 ~~~~~P~~v~~l~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~ 397 (413)
T 1a12_A 325 EEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVS 397 (413)
T ss_dssp CCEEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEE
T ss_pred ccccCCEEecccCceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEccccccCCCeEEEEe
Confidence 5667888887543 3999999999999999999999999999999999999999999876444444445444
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-69 Score=547.90 Aligned_cols=370 Identities=25% Similarity=0.421 Sum_probs=316.9
Q ss_pred CCCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCC---CCcccceeecCC--CCCcEEEEEccCCeeEEEEccC
Q 013457 16 APFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDA---EDRLSPTQLSAL--DGHEIVSVTCGADHTTAYSESC 90 (442)
Q Consensus 16 ~~~~~i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~---~~~~~P~~v~~~--~~~~i~~i~~G~~~~~~l~~~~ 90 (442)
.+...|....+...|+++++++|+||+||.|.+||||++.. .+...|++++.+ ...+|++|+||..|+++|+++
T Consensus 7 ~~~~~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~- 85 (473)
T 3of7_A 7 HHMSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEE- 85 (473)
T ss_dssp --CTTCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETT-
T ss_pred hhhhhhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecC-
Confidence 56778888899999999999999999999999999999985 346778888776 456899999999999999999
Q ss_pred CeEEEEecCCCCccCCCCCCC-----------------------ceeeEEecc--c----CCCcEEEEEeCCceEEEEEc
Q 013457 91 MQVYSWGWGDFGRLGHGNSSD-----------------------LFTPLPIKA--L----HSLRVKQIACGDSHCLAVTV 141 (442)
Q Consensus 91 G~vy~wG~n~~gqlG~~~~~~-----------------------~~~p~~v~~--~----~~~~i~~Ia~G~~h~~~lt~ 141 (442)
|+||+||.|.+||||.+.... ...|.++.. + .+.+|++|+||..|+++|++
T Consensus 86 G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~ 165 (473)
T 3of7_A 86 SNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFS 165 (473)
T ss_dssp CCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEET
T ss_pred CeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeC
Confidence 999999999999999987654 456777764 4 36799999999999999999
Q ss_pred CCeEEEEeC--CCCCCcCCCCC--CCcccceeeecccCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCC--
Q 013457 142 EGEVQSWGR--NQNGQLGLGTT--EDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND-- 215 (442)
Q Consensus 142 ~G~vy~wG~--n~~gqlG~~~~--~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~-- 215 (442)
+|+||+||. |..||||.+.. .....|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+....
T Consensus 166 ~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~ 245 (473)
T 3of7_A 166 NGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFR 245 (473)
T ss_dssp TSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGT
T ss_pred CCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCcccccc
Confidence 999999998 67899998544 355678888888888999999999999999999999999999999999876533
Q ss_pred --eeeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCC----CccceeEecccCCCcEEEEEcCC
Q 013457 216 --RLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFK----DHLVPCQLEALRESFISQISGGW 289 (442)
Q Consensus 216 --~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~----~~~~p~~v~~~~~~~i~~I~~G~ 289 (442)
...|.++.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|+++..+.+.+|++|+||.
T Consensus 246 ~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~ 322 (473)
T 3of7_A 246 LKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGE 322 (473)
T ss_dssp TTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECS
T ss_pred ccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCC
Confidence 345655532 689999999999999999999999999999999998754 24579999988888899999999
Q ss_pred CceEEEeCCCcEEEeecCCCcccccCCCC--------------CcccceEeccC--CCcEEecCceEEEEEcCCCEEEEe
Q 013457 290 RHTMAVTSDGKLYGWGWNKFGQVGVGDNV--------------DHCSPVQVKFP--LDQISCGWRHTLAVTERQNVFSWG 353 (442)
Q Consensus 290 ~hs~~lt~~G~vy~wG~n~~GqLG~g~~~--------------~~~~p~~v~~~--~~~i~~G~~h~~alt~~g~v~~wG 353 (442)
+|+++|+++|+||+||.|.+||||.+... ....|+++... +.+|+||.+|++||+++|+||+||
T Consensus 323 ~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~~G~vy~wG 402 (473)
T 3of7_A 323 HHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWG 402 (473)
T ss_dssp SEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCceEEEEeCCCeEEEEeCCCcEEEee
Confidence 99999999999999999999999986531 12456666543 349999999999999999999999
Q ss_pred CCCCCCCCCCC-CCCCCCcEEeccCCCCCCceeEeec
Q 013457 354 RGTNGQLGHGE-SSDRNSPKIIEPLSLDGSKGQNIAS 389 (442)
Q Consensus 354 ~n~~gqLG~g~-~~~~~~P~~i~~l~~~~~~~~~~~~ 389 (442)
.|++||||+|+ ..++..|+.|+.+...+.....+..
T Consensus 403 ~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~c 439 (473)
T 3of7_A 403 FGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGC 439 (473)
T ss_dssp CCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEE
T ss_pred CCCCCCCCCCCCCccccCCeEecccccCCCeEEEEee
Confidence 99999999999 7888999999876655555555543
No 6
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-67 Score=523.64 Aligned_cols=329 Identities=31% Similarity=0.566 Sum_probs=310.5
Q ss_pred CCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCc--EEEEEccCCeeEEEEccCCeEEE
Q 013457 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHE--IVSVTCGADHTTAYSESCMQVYS 95 (442)
Q Consensus 18 ~~~i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~--i~~i~~G~~~~~~l~~~~G~vy~ 95 (442)
..+|++|+||..|+++|+++|+||+||.|.+||||.+..+....|+++..+.+.. +++|+||..|+++|+++ |+||+
T Consensus 52 ~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~-G~v~~ 130 (389)
T 3kci_A 52 TLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE-GEVYS 130 (389)
T ss_dssp HTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETT-SCEEE
T ss_pred CCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCC-CCEEE
Confidence 3589999999999999999999999999999999999999999999999887654 47889999999999999 99999
Q ss_pred EecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccC
Q 013457 96 WGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEG 175 (442)
Q Consensus 96 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~ 175 (442)
||.|.+||||.++......|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++..+.+
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~ 210 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG 210 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred CcEEEEEeCC--CeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEEEe
Q 013457 176 VSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYG 253 (442)
Q Consensus 176 ~~i~~ia~G~--~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~~G 253 (442)
.+|++|+||. .|+++|+++|+||+||.|.+||||.+.......|.++..+.+.+|++|+||.+|+++|+++|+||+||
T Consensus 211 ~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG 290 (389)
T 3kci_A 211 HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWG 290 (389)
T ss_dssp SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEe
Confidence 9999999995 89999999999999999999999999988889999999888889999999999999999999999999
Q ss_pred CCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCCCcccccCCCCCcccceEeccCC---
Q 013457 254 WSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL--- 330 (442)
Q Consensus 254 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~--- 330 (442)
.|.+||||.+.......|+++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++......|++|..+.
T Consensus 291 ~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~ 370 (389)
T 3kci_A 291 KGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKK 370 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSC
T ss_pred CCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCC
Confidence 99999999999888889999999998899999999999999999999999999999999999999999999987543
Q ss_pred -CcEEecCceEEEEEcCC
Q 013457 331 -DQISCGWRHTLAVTERQ 347 (442)
Q Consensus 331 -~~i~~G~~h~~alt~~g 347 (442)
.+|+||.+|++||++++
T Consensus 371 v~~va~G~~ht~al~~~~ 388 (389)
T 3kci_A 371 VNRVACGSAHTLAWSTSK 388 (389)
T ss_dssp CCEEEEETTEEEEECC--
T ss_pred EEEEEecCCcEEEEecCC
Confidence 39999999999998764
No 7
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=8.5e-65 Score=506.78 Aligned_cols=334 Identities=36% Similarity=0.698 Sum_probs=305.8
Q ss_pred CcEEEEEccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCC-eEEEEe
Q 013457 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEG-EVQSWG 149 (442)
Q Consensus 71 ~~i~~i~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G-~vy~wG 149 (442)
.+|++|+||..|+++|+++ |+||+||.|.+||||.++..+...|.++..+.+.+|++|+||..|+++|+++| +||+||
T Consensus 16 ~~v~~ia~G~~hs~al~~~-g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 16 RKVLIISAGASHSVALLSG-DIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCEEEEEECSSEEEEEETT-TEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred cceEEEecCCCeEEEEEeC-CEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 5899999999999999999 99999999999999999999999999999998889999999999999999986 999999
Q ss_pred CCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCce
Q 013457 150 RNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREK 229 (442)
Q Consensus 150 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~ 229 (442)
.|.+||||.+.......|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+.+.+
T Consensus 95 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~ 174 (406)
T 4d9s_A 95 WGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR 174 (406)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCC
T ss_pred CCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCc
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999999888889
Q ss_pred EEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCCC
Q 013457 230 MVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKF 309 (442)
Q Consensus 230 i~~I~~G~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~ 309 (442)
|++|+||.+|+++|+++|+||+||.|.+||||.+...+...|.++..+...+|++|+||.+|+++|+++|+||+||.|.+
T Consensus 175 i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~ 254 (406)
T 4d9s_A 175 IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 254 (406)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTT
T ss_pred EEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCC
Confidence 99999999999999999999999999999999999888899999999988889999999999999999999999999999
Q ss_pred cccccCCCCCcccceEeccCC----CcEEecCceEEEEEcCCCEEEEeCCCCCCCCCCCCCCCCCcEEeccCCCCCCcee
Q 013457 310 GQVGVGDNVDHCSPVQVKFPL----DQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQ 385 (442)
Q Consensus 310 GqLG~g~~~~~~~p~~v~~~~----~~i~~G~~h~~alt~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~~~~~~~~ 385 (442)
||||.++..+...|.++..+. .+|+||.+|++||+++|+||+||.|.+||||.|+..+...|.++..+... ...
T Consensus 255 GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~--~v~ 332 (406)
T 4d9s_A 255 GQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ--KVV 332 (406)
T ss_dssp STTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGC--CEE
T ss_pred CCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCC--cEE
Confidence 999999988888899887543 38999999999999999999999999999999999998999998755422 333
Q ss_pred Eeec----ccccCCCCCcccCCCCCc
Q 013457 386 NIAS----SKYDPSSGKTWVSPSERY 407 (442)
Q Consensus 386 ~~~~----~~~~~~~~~~~~~~~~~~ 407 (442)
.++. +.+...+|..|.|..+.+
T Consensus 333 ~va~G~~hs~alt~~G~v~~wG~n~~ 358 (406)
T 4d9s_A 333 QVSCGWRHTLAVTERNNVFAWGRGTN 358 (406)
T ss_dssp EEEECSSEEEEEETTSCEEEEECCTT
T ss_pred EEEeCCCeEEEEeCCCCEEEecCCCC
Confidence 3322 334455687877766554
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=2.2e-64 Score=505.30 Aligned_cols=332 Identities=27% Similarity=0.487 Sum_probs=292.2
Q ss_pred cccCCCCCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCC--CcccceeecCCCCCcEEEEEccCCeeEEEEc
Q 013457 11 ASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAE--DRLSPTQLSALDGHEIVSVTCGADHTTAYSE 88 (442)
Q Consensus 11 ~~~~~~~~~~i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~--~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~ 88 (442)
.|..++.+.+|++|+||..|+++|+++|+||+||.|.+||||.+... ....|+++. +. .+|++|+||..|+++|++
T Consensus 51 ~P~~v~~~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-l~-~~i~~va~G~~hs~alt~ 128 (413)
T 1a12_A 51 KPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE-LQ-EKVVQVSAGDSHTAALTD 128 (413)
T ss_dssp EEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECC-CC-SCEEEEEECSSEEEEEET
T ss_pred cceEccCCCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEec-CC-CcEEEEecCCCeEEEEcC
Confidence 44555567899999999999999999999999999999999998763 467888884 43 389999999999999999
Q ss_pred cCCeEEEEec--CCCCccCCCCCCCc-eeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCC--
Q 013457 89 SCMQVYSWGW--GDFGRLGHGNSSDL-FTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTED-- 163 (442)
Q Consensus 89 ~~G~vy~wG~--n~~gqlG~~~~~~~-~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~-- 163 (442)
+ |+||+||. |.+||||.+..... ..|.++ +...+|++|+||..|+++|+++|+||+||.|.+||||.+....
T Consensus 129 ~-G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~ 205 (413)
T 1a12_A 129 D-GRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFAN 205 (413)
T ss_dssp T-SCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSS
T ss_pred C-CcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccc
Confidence 9 99999998 99999998876443 346666 5567999999999999999999999999999999999875421
Q ss_pred ---------cccceeeecc-----cCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCC--
Q 013457 164 ---------SLVPQKLQAF-----EGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDR-- 227 (442)
Q Consensus 164 ---------~~~p~~v~~~-----~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~-- 227 (442)
...|+.+... ...+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+.+
T Consensus 206 ~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~ 285 (413)
T 1a12_A 206 RGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNST 285 (413)
T ss_dssp SCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTT
T ss_pred ccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCC
Confidence 2456555432 346899999999999999999999999999999999999888889999988776
Q ss_pred ceEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCC-CCCCccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeec
Q 013457 228 EKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHG-DFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGW 306 (442)
Q Consensus 228 ~~i~~I~~G~~~s~~lt~~G~vy~~G~n~~gqlG~~-~~~~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~ 306 (442)
.+|++|+||.+|+++|+++|+||+||.|.+||||.+ .......|++|+.+. +|++|+||.+|+++|+++|+||+||.
T Consensus 286 ~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~ 363 (413)
T 1a12_A 286 KSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGM 363 (413)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred ceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccC--ceeEEEECcceEEEEeCCCCEEEecC
Confidence 679999999999999999999999999999999998 556677899999887 49999999999999999999999999
Q ss_pred CCCcccccCCCCCcccceEeccC------CCcEEecCceEEEEEcCCCE
Q 013457 307 NKFGQVGVGDNVDHCSPVQVKFP------LDQISCGWRHTLAVTERQNV 349 (442)
Q Consensus 307 n~~GqLG~g~~~~~~~p~~v~~~------~~~i~~G~~h~~alt~~g~v 349 (442)
|.+||||.++..+...|+++..+ ..+|+||.+|+++|+++|++
T Consensus 364 n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 364 GTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp CTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred CCCCCCCCCCCCCcccCeEccccccCCCeEEEEeeCCCcEEEEEecCCC
Confidence 99999999999888999999753 23899999999999998864
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=8.1e-63 Score=495.65 Aligned_cols=330 Identities=26% Similarity=0.404 Sum_probs=290.5
Q ss_pred ccccCCCCCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCC--cccceeecCCCCCcEEEEEccCCeeEEEE
Q 013457 10 AASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED--RLSPTQLSALDGHEIVSVTCGADHTTAYS 87 (442)
Q Consensus 10 ~~~~~~~~~~~i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~--~~~P~~v~~~~~~~i~~i~~G~~~~~~l~ 87 (442)
..|..++...+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|.++... .+|++|+||..|+++|+
T Consensus 66 ~~p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~ 143 (423)
T 3mvd_K 66 KRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLL 143 (423)
T ss_dssp EEEEECCSCSSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEE
T ss_pred cCCeEccCCCCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEe
Confidence 3566677788999999999999999999999999999999999988764 6788888744 37999999999999999
Q ss_pred ccCCeEEEEec--CCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCC---
Q 013457 88 ESCMQVYSWGW--GDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE--- 162 (442)
Q Consensus 88 ~~~G~vy~wG~--n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~--- 162 (442)
++ |+||+||. |.+||||.+..... +.|+..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+...
T Consensus 144 ~~-G~v~~wG~~~n~~GqlG~~~~~~~--~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~ 220 (423)
T 3mvd_K 144 ED-GRVFAWGSFRDSHGNMGLTIDGNK--RTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSIS 220 (423)
T ss_dssp TT-SCEEEEECEECSSSEEESBTTBCE--EEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTT
T ss_pred CC-CeEEEEeCCCCCCCCcCcCCCCCC--ceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccc
Confidence 99 99999999 99999999877665 445555677899999999999999999999999999999999997653
Q ss_pred --------CcccceeeecccCCcEEEEEeCCCeEEEE-ecCCcEEEEeCCCCCCcCCCCCCCe--eeeeEeeeeCCceEE
Q 013457 163 --------DSLVPQKLQAFEGVSIKMVAAGAEHSVAV-AEDGELYGWGWGRYGNLGLGDRNDR--LIPEKVATVDREKMV 231 (442)
Q Consensus 163 --------~~~~p~~v~~~~~~~i~~ia~G~~h~~~L-t~~G~vy~wG~n~~GqlG~~~~~~~--~~p~~v~~~~~~~i~ 231 (442)
....|.++..+...+|++|+||.+|++++ +++|+||+||.|.+||||.+..... ..|.++. ..+|+
T Consensus 221 ~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~ 297 (423)
T 3mvd_K 221 GEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIR 297 (423)
T ss_dssp SCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEE
T ss_pred cccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeE
Confidence 44578888877788999999999999999 6999999999999999999655433 3454443 46899
Q ss_pred EEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCC-ccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCCCc
Q 013457 232 MVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKD-HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFG 310 (442)
Q Consensus 232 ~I~~G~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~-~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~G 310 (442)
+|+||.+|+++|+++|+||+||+|.+||||.+...+ ...|++++.+.. +|++|+||.+|+++|+++|+||+||.|.+|
T Consensus 298 ~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~G 376 (423)
T 3mvd_K 298 HIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNN 376 (423)
T ss_dssp EEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTS
T ss_pred EEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCC
Confidence 999999999999999999999999999999998766 467999988876 799999999999999999999999999999
Q ss_pred ccccCCCCCcccceEeccC------CCcEEecCceEEEEEcCCC
Q 013457 311 QVGVGDNVDHCSPVQVKFP------LDQISCGWRHTLAVTERQN 348 (442)
Q Consensus 311 qLG~g~~~~~~~p~~v~~~------~~~i~~G~~h~~alt~~g~ 348 (442)
|||.++..+...|++|..+ +.+|+||.+|+++|+++++
T Consensus 377 qLG~g~~~~~~~P~~v~~~~~~~~~v~~va~G~~ht~~l~~~~k 420 (423)
T 3mvd_K 377 QLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADK 420 (423)
T ss_dssp CSSSSSSCCEEEEEECCSTTTTTCCEEEEEECSSEEEEEEECC-
T ss_pred CCCCCCCCCcccCeEEeCcccCCCEEEEEEECCCcEEEEEcccc
Confidence 9999999999999999852 2389999999999999874
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-62 Score=495.78 Aligned_cols=323 Identities=26% Similarity=0.472 Sum_probs=281.8
Q ss_pred CCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCC-----------------------cccceeecC--CC--
Q 013457 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED-----------------------RLSPTQLSA--LD-- 69 (442)
Q Consensus 17 ~~~~i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~-----------------------~~~P~~v~~--~~-- 69 (442)
...+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|++++. |+
T Consensus 65 ~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~ 144 (473)
T 3of7_A 65 DEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPL 144 (473)
T ss_dssp TTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHH
T ss_pred CCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcc
Confidence 456999999999999999999999999999999999987654 567888875 53
Q ss_pred --CCcEEEEEccCCeeEEEEccCCeEEEEec--CCCCccCCCCC--CCceeeEEecccCCCcEEEEEeCCceEEEEEcCC
Q 013457 70 --GHEIVSVTCGADHTTAYSESCMQVYSWGW--GDFGRLGHGNS--SDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEG 143 (442)
Q Consensus 70 --~~~i~~i~~G~~~~~~l~~~~G~vy~wG~--n~~gqlG~~~~--~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G 143 (442)
+.+|++|+||..|+++|+++ |+||+||. |..||||.+.. .....|.++..+.+.+|++|+||..|+++|+++|
T Consensus 145 ~~~~~i~~va~G~~hs~alt~~-G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G 223 (473)
T 3of7_A 145 AEGHKVVQLAATDNMSCALFSN-GEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEG 223 (473)
T ss_dssp HTTCCEEEEEECSSEEEEEETT-SCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTS
T ss_pred cCCCcEEEEEccCCEEEEEeCC-CeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCC
Confidence 57899999999999999999 99999998 68899998544 4567888888888889999999999999999999
Q ss_pred eEEEEeCCCCCCcCCCCCCC----cccceeeecccCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCC----C
Q 013457 144 EVQSWGRNQNGQLGLGTTED----SLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRN----D 215 (442)
Q Consensus 144 ~vy~wG~n~~gqlG~~~~~~----~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~----~ 215 (442)
+||+||.|.+||||.+.... ...|.++.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+... .
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~ 300 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCE
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCce
Confidence 99999999999999986553 345555532 579999999999999999999999999999999988754 3
Q ss_pred eeeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCC--------------CCccceeEecccCCCc
Q 013457 216 RLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDF--------------KDHLVPCQLEALRESF 281 (442)
Q Consensus 216 ~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~~G~n~~gqlG~~~~--------------~~~~~p~~v~~~~~~~ 281 (442)
...|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.. .....|.+++.+. +
T Consensus 301 ~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~ 378 (473)
T 3of7_A 301 VTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--K 378 (473)
T ss_dssp EEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--C
T ss_pred eeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--c
Confidence 46788888888889999999999999999999999999999999998642 1234577776555 4
Q ss_pred EEEEEcCCCceEEEeCCCcEEEeecCCCcccccCC-CCCcccceEeccC------CCcEEecCceEEEEEc
Q 013457 282 ISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGD-NVDHCSPVQVKFP------LDQISCGWRHTLAVTE 345 (442)
Q Consensus 282 i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG~g~-~~~~~~p~~v~~~------~~~i~~G~~h~~alt~ 345 (442)
|++|+||.+|+++|+++|+||+||.|.+||||.++ ..+...|++|..+ ..+|+||..|++++..
T Consensus 379 v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~ 449 (473)
T 3of7_A 379 FKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGV 449 (473)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEE
T ss_pred eEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEEe
Confidence 99999999999999999999999999999999999 6778899999743 2289999999999976
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=6.7e-53 Score=399.37 Aligned_cols=260 Identities=25% Similarity=0.422 Sum_probs=217.6
Q ss_pred ccCCCCCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCCeeEEEEccCC
Q 013457 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCM 91 (442)
Q Consensus 12 ~~~~~~~~~i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G 91 (442)
+.+.+...+|++|+||..|+++|+ ||+||+||.|.+||||. |.. . ..+|++|+||..|+++|+ + |
T Consensus 17 ~~p~~~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~--------p~~--~--~~~i~~ia~G~~hs~~l~-~-G 81 (282)
T 3qhy_B 17 TVPAEAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM--------PAA--T--QSGVDAIAAGNYHSLALK-D-G 81 (282)
T ss_dssp CCCGGGSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC--------CGG--G--GSCCCEEEECSSEEEEEE-T-T
T ss_pred cCCccccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC--------Ccc--C--CCCEEEEEeCCCEEEEEE-C-C
Confidence 444556679999999999999998 99999999999999995 221 1 237999999999999995 7 9
Q ss_pred eEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeee
Q 013457 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (442)
Q Consensus 92 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 171 (442)
+||+||.|.+||||. |.++ ..+|++|+||..|+++|+ +|+||+||.|.+||||... +
T Consensus 82 ~v~~wG~n~~Gqlg~--------P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~--------~-- 138 (282)
T 3qhy_B 82 EVIAWGGNEDGQTTV--------PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA--------E-- 138 (282)
T ss_dssp EEEEEECCTTSTTCC--------CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG--------G--
T ss_pred EEEEeeCCCCCCCCC--------Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc--------c--
Confidence 999999999999985 3322 238999999999999999 9999999999999998421 1
Q ss_pred cccCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEE
Q 013457 172 AFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYS 251 (442)
Q Consensus 172 ~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~ 251 (442)
...+|++|+||.+|+++|+ +|+||+||.|.+|||+. |.++ ..+|++|+||.+|+++| ++|+||+
T Consensus 139 --~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~----~~~v~~i~~G~~hs~al-~~G~v~~ 202 (282)
T 3qhy_B 139 --AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA----QSGVDDVAGGIFHSLAL-KDGKVIA 202 (282)
T ss_dssp --GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG----GSSEEEEEECSSEEEEE-ETTEEEE
T ss_pred --CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec----CCCeEEEEecCCEEEEE-ECCeEEE
Confidence 1236999999999999999 89999999999999983 2222 35799999999999999 8999999
Q ss_pred EeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCCCcccccCCCCCcccceEeccCCC
Q 013457 252 YGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLD 331 (442)
Q Consensus 252 ~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 331 (442)
||.|.+||||.+. +.+. +|++|+||..|+++|+ +|+||+||.|.++|++..+ ...
T Consensus 203 wG~n~~gqlg~p~----------~~~~--~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~~------------~v~ 257 (282)
T 3qhy_B 203 WGDNRYKQTTVPT----------EALS--GVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQS------------GVS 257 (282)
T ss_dssp EECCTTSTTCCCG----------GGGS--SCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGSS------------CEE
T ss_pred EECCCCCCCCCCc----------ccCC--CceEEEcCCCEEEEEE-CCEEEEecCCCCccccCCC------------CcE
Confidence 9999999998542 1223 3899999999999999 9999999999999997621 234
Q ss_pred cEEecCceEEEEEcCCCEE
Q 013457 332 QISCGWRHTLAVTERQNVF 350 (442)
Q Consensus 332 ~i~~G~~h~~alt~~g~v~ 350 (442)
+|+||..|++||+++++.+
T Consensus 258 ~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 258 SIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp EEEECSSCEEEEEC-----
T ss_pred EEEECcCeEEEEecCCCCC
Confidence 8999999999999987654
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=4e-52 Score=394.07 Aligned_cols=251 Identities=27% Similarity=0.453 Sum_probs=210.4
Q ss_pred CeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEE
Q 013457 38 NIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLP 117 (442)
Q Consensus 38 g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~ 117 (442)
.+||+||+|...++. |.+++.+. +|++|+||..|+++|+ + |+||+||.|.+||||.+ .
T Consensus 2 ~~v~~WG~n~~~~~~---------~~p~~~~~--~i~~ia~G~~h~~~l~-~-G~v~~wG~n~~Gqlg~p--------~- 59 (282)
T 3qhy_B 2 TSVVAWGGNNDWGEA---------TVPAEAQS--GVDAIAGGYFHGLALK-G-GKVLGWGANLNGQLTMP--------A- 59 (282)
T ss_dssp CEEEEECSCCTTSTT---------CCCGGGSS--SCCEEEECSSEEEEEE-T-TEEEEEECCSSSTTSCC--------G-
T ss_pred eEEEEeCCCCCcCcc---------cCCccccC--CCcEEEeCCCeEEEEE-C-CEEEEEeCCCCCCCCCC--------c-
Confidence 369999999755443 22223333 7999999999999998 7 99999999999999952 1
Q ss_pred ecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEecCCcE
Q 013457 118 IKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGEL 197 (442)
Q Consensus 118 v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~v 197 (442)
.. ..+|++|+||..|+++|+ ||+||+||.|.+||||. |.++. .+|++|+||.+|+++|+ +|+|
T Consensus 60 -~~--~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~~----~~v~~ia~G~~hs~al~-~G~v 122 (282)
T 3qhy_B 60 -AT--QSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEAR----SGVDAIAAGAWASYALK-DGKV 122 (282)
T ss_dssp -GG--GSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGGS----SSEEEEEEETTEEEEEE-TTEE
T ss_pred -cC--CCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------CcccC----CCeEEEECcCCEEEEEe-CCeE
Confidence 11 237999999999999996 99999999999999985 33332 37999999999999999 9999
Q ss_pred EEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEeccc
Q 013457 198 YGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL 277 (442)
Q Consensus 198 y~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~ 277 (442)
|+||.|.+|||+... ....+|++|+||.+|+++|+ +|+||+||.|.++||+. |.++
T Consensus 123 ~~wG~n~~gqlg~~~------------~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~--- 178 (282)
T 3qhy_B 123 IAWGDDSDGQTTVPA------------EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA--- 178 (282)
T ss_dssp EEEECCTTSTTSCCG------------GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG---
T ss_pred EEecCCCCCcCCCCc------------cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec---
Confidence 999999999998421 12257999999999999999 89999999999999983 2222
Q ss_pred CCCcEEEEEcCCCceEEEeCCCcEEEeecCCCcccccCCCCCcccceEeccCCCcEEecCceEEEEEcCCCEEEEeCCCC
Q 013457 278 RESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRGTN 357 (442)
Q Consensus 278 ~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~i~~G~~h~~alt~~g~v~~wG~n~~ 357 (442)
..+|++|+||.+|+++| ++|+||+||.|.+||||.+. +......+|+||.+|+++|+ +|+||+||.|++
T Consensus 179 -~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~--------~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 179 -QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPT--------EALSGVSAIASGEWYSLALK-NGKVIAWGSSRT 247 (282)
T ss_dssp -GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCG--------GGGSSCCEEEECSSCEEEEE-TTEEEEESTTCC
T ss_pred -CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCc--------ccCCCceEEEcCCCEEEEEE-CCEEEEecCCCC
Confidence 24599999999999999 89999999999999998542 22334569999999999999 999999999999
Q ss_pred CCCCC
Q 013457 358 GQLGH 362 (442)
Q Consensus 358 gqLG~ 362 (442)
+|++.
T Consensus 248 gq~~v 252 (282)
T 3qhy_B 248 APSSV 252 (282)
T ss_dssp CCGGG
T ss_pred ccccC
Confidence 99975
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.09 E-value=0.24 Score=48.21 Aligned_cols=278 Identities=10% Similarity=0.100 Sum_probs=156.9
Q ss_pred CCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCCeeEEEEccCCeEEEEe
Q 013457 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWG 97 (442)
Q Consensus 18 ~~~i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G~vy~wG 97 (442)
...|..++......+.-..||.|.+|-.... .....+.. ....|..++....+.+.-..+ |.|..|-
T Consensus 133 ~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~-----------~~~~~~~~-h~~~v~~l~~~~~~l~sg~~d-g~i~vwd 199 (435)
T 1p22_A 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL-----------ECKRILTG-HTGSVLCLQYDERVIITGSSD-STVRVWD 199 (435)
T ss_dssp CCCEEEEECCSSEEEEEESSSCEEEEESSSC-----------CEEEEECC-CSSCEEEEECCSSEEEEEETT-SCEEEEE
T ss_pred CCcEEEEEECCCEEEEEeCCCeEEEEeCCCC-----------eEEEEEcC-CCCcEEEEEECCCEEEEEcCC-CeEEEEE
Confidence 3457788887777777778999999954321 11111211 224688888866666666667 9999996
Q ss_pred cCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCc
Q 013457 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVS 177 (442)
Q Consensus 98 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~ 177 (442)
..... ....+. .....|..++......+.-+.||.|..|-......+ .......-....
T Consensus 200 ~~~~~-----------~~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~---------~~~~~~~~~~~~ 258 (435)
T 1p22_A 200 VNTGE-----------MLNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI---------TLRRVLVGHRAA 258 (435)
T ss_dssp SSSCC-----------EEEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC---------EEEEEECCCSSC
T ss_pred CCCCc-----------EEEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCc---------eeeeEecCCCCc
Confidence 53211 111111 123468888888888888889999999965332110 011111112335
Q ss_pred EEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEEEeCCCC
Q 013457 178 IKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKY 257 (442)
Q Consensus 178 i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~~G~n~~ 257 (442)
|..++....+.+.-..||.|..|-.... .....+. .....|..++......+.-..+|.|..|-....
T Consensus 259 v~~~~~~~~~l~s~~~dg~i~vwd~~~~-----------~~~~~~~-~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 259 VNVVDFDDKYIVSASGDRTIKVWNTSTC-----------EFVRTLN-GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTTC-----------CEEEEEE-CCSSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCcC-----------cEEEEEc-CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC
Confidence 7777777777778888999999964321 0111111 122456667666677777788999999964321
Q ss_pred CcCCCCCCCCccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCCCcccccCCCCCcccceE-e---ccCCCcE
Q 013457 258 GQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQ-V---KFPLDQI 333 (442)
Q Consensus 258 gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~-v---~~~~~~i 333 (442)
. ....+.. ....|..++....+.+.-..||.|..|-......... .....+.. + ...+..+
T Consensus 327 ~-----------~~~~~~~-h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l 391 (435)
T 1p22_A 327 A-----------CLRVLEG-HEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRA---PAGTLCLRTLVEHSGRVFRL 391 (435)
T ss_dssp C-----------EEEEECC-CSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTS---CTTTTEEEEECCCSSCCCCE
T ss_pred C-----------EEEEEeC-CcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccc---cccchheeeccCCCCCeEEE
Confidence 0 1111111 2234777887666666667899999996432110000 00000111 1 1122255
Q ss_pred EecCceEEEEEcCCCEEEEeCCC
Q 013457 334 SCGWRHTLAVTERQNVFSWGRGT 356 (442)
Q Consensus 334 ~~G~~h~~alt~~g~v~~wG~n~ 356 (442)
+......+....||.|..|--..
T Consensus 392 ~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 392 QFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EECSSCEEECCSSSEEEEEC---
T ss_pred EeCCCEEEEEeCCCEEEEEECCC
Confidence 55555555556788999997544
No 14
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.51 E-value=0.38 Score=49.94 Aligned_cols=69 Identities=23% Similarity=0.202 Sum_probs=36.5
Q ss_pred CCceEEEeCCCcEEEeecCCCcccccCCCCCcccceEeccCCC-------cEEecCceEE-EEEcCCCEEEEeCCCCC
Q 013457 289 WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLD-------QISCGWRHTL-AVTERQNVFSWGRGTNG 358 (442)
Q Consensus 289 ~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~-------~i~~G~~h~~-alt~~g~v~~wG~n~~g 358 (442)
..|++++.-+|+||+.|-...++. .+.......+........ .-..-.+|++ ++..+|+||..|.+.++
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred ccCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence 357777777999999986444321 101111111111111001 0112245664 45689999999987664
No 15
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.28 E-value=0.91 Score=44.04 Aligned_cols=269 Identities=10% Similarity=0.038 Sum_probs=150.4
Q ss_pred EEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCCeeEEEEccCCeEEEEecCC
Q 013457 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGD 100 (442)
Q Consensus 21 i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G~vy~wG~n~ 100 (442)
+..++..+...+.-..||.|.+|-...... ...+.. ....|..++......+.-..+ |.|+.|-...
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~-----------~~~~~~-h~~~v~~~~~~~~~l~s~~~d-g~i~vwd~~~ 188 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKC-----------LRTLVG-HTGGVWSSQMRDNIIISGSTD-RTLKVWNAET 188 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCE-----------EEECCC-CSSCEEEEEEETTEEEEEETT-SCEEEEETTT
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcE-----------EEEEcC-CCCCEEEEEecCCEEEEEeCC-CeEEEEECCc
Confidence 445555555555566888888886532211 111111 123577777777766666777 9999996432
Q ss_pred CCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEE
Q 013457 101 FGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180 (442)
Q Consensus 101 ~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ 180 (442)
.. ....+. .....|..++......+.-+.||.|+.|-...... ...+. .....|..
T Consensus 189 ~~-----------~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~-~~~~~v~~ 244 (445)
T 2ovr_B 189 GE-----------CIHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC-----------LHVLM-GHVAAVRC 244 (445)
T ss_dssp TE-----------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE-----------EEEEE-CCSSCEEE
T ss_pred Cc-----------EEEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcE-----------EEEEc-CCcccEEE
Confidence 11 111111 12346788888778888888999999996543110 01111 12335777
Q ss_pred EEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEEEeCCCCCcC
Q 013457 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQL 260 (442)
Q Consensus 181 ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~~G~n~~gql 260 (442)
++......+.-..+|.|+.|-.... .+..........|..+.....+.+.-..+|.|..|=......
T Consensus 245 ~~~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~- 311 (445)
T 2ovr_B 245 VQYDGRRVVSGAYDFMVKVWDPETE------------TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC- 311 (445)
T ss_dssp EEECSSCEEEEETTSCEEEEEGGGT------------EEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE-
T ss_pred EEECCCEEEEEcCCCEEEEEECCCC------------cEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCE-
Confidence 7777777777788999999953211 111111112345777777666777778899999996432111
Q ss_pred CCCCCCCccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCCCcccccCCCCCcccceEeccCCCcEEecCceE
Q 013457 261 GHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHT 340 (442)
Q Consensus 261 G~~~~~~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~i~~G~~h~ 340 (442)
...+.. ....+..++......+.-..+|.|..|-....-.+..-. .+..-......++......
T Consensus 312 ----------~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~l 375 (445)
T 2ovr_B 312 ----------IHTLTG-HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ-----GPNKHQSAVTCLQFNKNFV 375 (445)
T ss_dssp ----------EEEECC-CCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEEC-----STTSCSSCEEEEEECSSEE
T ss_pred ----------EEEEcC-CcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEc-----cCCCCCCCEEEEEECCCEE
Confidence 111111 122356666656666666789999999654321110000 0000001112455555666
Q ss_pred EEEEcCCCEEEEeCC
Q 013457 341 LAVTERQNVFSWGRG 355 (442)
Q Consensus 341 ~alt~~g~v~~wG~n 355 (442)
+.-..||.|..|--.
T Consensus 376 ~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 376 ITSSDDGTVKLWDLK 390 (445)
T ss_dssp EEEETTSEEEEEETT
T ss_pred EEEeCCCeEEEEECC
Confidence 666788999999653
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.90 E-value=1.3 Score=46.24 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=14.6
Q ss_pred CceEEEEeCCCCEEEEeC
Q 013457 237 WRHTISVSSSGRLYSYGW 254 (442)
Q Consensus 237 ~~~s~~lt~~G~vy~~G~ 254 (442)
..|++++..++++|.+|-
T Consensus 598 ~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 598 YGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp BSCEEEEEETTEEEEECC
T ss_pred ccceEEEeCCCEEEEECC
Confidence 467888777799999984
No 17
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.78 E-value=0.022 Score=50.54 Aligned_cols=67 Identities=31% Similarity=0.509 Sum_probs=54.7
Q ss_pred cEEEEEcCCCceEEEeCCCcEEEeecCCCcccccCCCCCcccceEeccCCCcEEecCceEEEEEcCCCEEEEeCCC
Q 013457 281 FISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRGT 356 (442)
Q Consensus 281 ~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~i~~G~~h~~alt~~g~v~~wG~n~ 356 (442)
.|..|+.-..|..++--+++++.+|+++.||+-+.. ...|. -++.+|..+++-+..-+.|..||..-
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~---tagPf------la~~AG~~fTVTVn~~nyv~FWGDSP 376 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDD---HAGPY------IQLAAGHNFTVTVNTLNQVMFWGDSP 376 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCG---GGCCE------EEEEECSSEEEEEETTCCEEEEECCT
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCC---CcchH------HhHhccCCeEEEEeceeeEEEecCCC
Confidence 477889999999999999999999999999995432 22332 37899999999999999999999754
No 18
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.33 E-value=2.2 Score=41.23 Aligned_cols=229 Identities=10% Similarity=0.050 Sum_probs=135.9
Q ss_pred CCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCCeeEEEEccCCeEEEE
Q 013457 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSW 96 (442)
Q Consensus 17 ~~~~i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G~vy~w 96 (442)
-...|..++......+.-..||.|.+|-.... .....+. .....|..++......+.-..+ |.|+.|
T Consensus 158 h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-----------~~~~~~~-~h~~~v~~~~~~~~~l~s~s~d-g~i~~w 224 (445)
T 2ovr_B 158 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETG-----------ECIHTLY-GHTSTVRCMHLHEKRVVSGSRD-ATLRVW 224 (445)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTT-----------EEEEEEC-CCSSCEEEEEEETTEEEEEETT-SEEEEE
T ss_pred CCCCEEEEEecCCEEEEEeCCCeEEEEECCcC-----------cEEEEEC-CCCCcEEEEEecCCEEEEEeCC-CEEEEE
Confidence 34456666666565556668889998854321 1111111 1224577888777777777777 999999
Q ss_pred ecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecc--c
Q 013457 97 GWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAF--E 174 (442)
Q Consensus 97 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~--~ 174 (442)
-..... +..........|..++......+.-+.||.|+.|-.... ..+..+ .
T Consensus 225 d~~~~~------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~ 278 (445)
T 2ovr_B 225 DIETGQ------------CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE--------------TCLHTLQGH 278 (445)
T ss_dssp ESSSCC------------EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT--------------EEEEEECCC
T ss_pred ECCCCc------------EEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCC--------------cEeEEecCC
Confidence 643211 111111123467778777777778888999999964321 111111 2
Q ss_pred CCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEEEeC
Q 013457 175 GVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGW 254 (442)
Q Consensus 175 ~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~~G~ 254 (442)
...|..++....+.+.-..||.|+.|-..... ....+ ......+..+.......+.-..+|.|..|-.
T Consensus 279 ~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~-~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 279 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-----------CIHTL-TGHQSLTSGMELKDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp SSCEEEEEECSSEEEEEETTSCEEEEETTTCC-----------EEEEE-CCCCSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CCceEEEEECCCEEEEEeCCCeEEEEECCCCC-----------EEEEE-cCCcccEEEEEEeCCEEEEEeCCCeEEEEEC
Confidence 23577888777777788889999999643211 00111 1112345566666667777788999999964
Q ss_pred CCCCcCCCCCCCCccceeEecc--cCCCcEEEEEcCCCceEEEeCCCcEEEeecC
Q 013457 255 SKYGQLGHGDFKDHLVPCQLEA--LRESFISQISGGWRHTMAVTSDGKLYGWGWN 307 (442)
Q Consensus 255 n~~gqlG~~~~~~~~~p~~v~~--~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n 307 (442)
.... ....+.. .....|..++....+.+.-..||.|..|-..
T Consensus 347 ~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 347 KTGQ-----------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp TTCC-----------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred CCCc-----------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence 3211 1111211 1223477777766666667789999999654
No 19
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.22 E-value=0.033 Score=49.45 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=59.5
Q ss_pred cEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEecCCcEEEEeCCC
Q 013457 125 RVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGR 204 (442)
Q Consensus 125 ~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~ 204 (442)
.|.+|+....|.+++--|+++++||++++||+-..... .+..++.+|.++++-+..-..+-.||+.-
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta-------------gPfla~~AG~~fTVTVn~~nyv~FWGDSP 376 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA-------------GPYIQLAAGHNFTVTVNTLNQVMFWGDSP 376 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG-------------CCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCCc-------------chHHhHhccCCeEEEEeceeeEEEecCCC
Confidence 68889999999999999999999999999999654332 25789999999999999999999999865
Q ss_pred CCCc
Q 013457 205 YGNL 208 (442)
Q Consensus 205 ~Gql 208 (442)
...|
T Consensus 377 DNSL 380 (400)
T 4gbf_A 377 DNSL 380 (400)
T ss_dssp TSTT
T ss_pred Ccce
Confidence 4443
No 20
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.21 E-value=2.4 Score=40.93 Aligned_cols=229 Identities=11% Similarity=0.088 Sum_probs=133.0
Q ss_pred cEEEEEccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCC
Q 013457 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRN 151 (442)
Q Consensus 72 ~i~~i~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n 151 (442)
.|..++....+.+.-..+ |.|..|-..... ....+. .....|..++......+.-..||.|..|-..
T Consensus 135 ~v~~~~~d~~~l~~g~~d-g~i~iwd~~~~~-----------~~~~~~-~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRD-NTIKIWDKNTLE-----------CKRILT-GHTGSVLCLQYDERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CEEEEECCSSEEEEEESS-SCEEEEESSSCC-----------EEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEESS
T ss_pred cEEEEEECCCEEEEEeCC-CeEEEEeCCCCe-----------EEEEEc-CCCCcEEEEEECCCEEEEEcCCCeEEEEECC
Confidence 477777777777777777 999999543211 111111 1234688888877777777889999999754
Q ss_pred CCCCcCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEE
Q 013457 152 QNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMV 231 (442)
Q Consensus 152 ~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~ 231 (442)
.... ...+. .....|..++......+.-..||.|+.|-...... .............|.
T Consensus 202 ~~~~-----------~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~---------~~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 202 TGEM-----------LNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD---------ITLRRVLVGHRAAVN 260 (435)
T ss_dssp SCCE-----------EEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC---------CEEEEEECCCSSCEE
T ss_pred CCcE-----------EEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC---------ceeeeEecCCCCcEE
Confidence 3210 11111 12336888888778888888999999996432111 111111122234677
Q ss_pred EEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCCCcc
Q 013457 232 MVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQ 311 (442)
Q Consensus 232 ~I~~G~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~Gq 311 (442)
.++....+.+.-..+|.|..|-..... ....+.. ....|..++......+.-..||.|..|-....-.
T Consensus 261 ~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~-~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 328 (435)
T 1p22_A 261 VVDFDDKYIVSASGDRTIKVWNTSTCE-----------FVRTLNG-HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC 328 (435)
T ss_dssp EEEEETTEEEEEETTSEEEEEETTTCC-----------EEEEEEC-CSSCEEEEEEETTEEEEEETTSCEEEEETTTCCE
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCcCc-----------EEEEEcC-CCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCE
Confidence 777766777777889999999643211 1111111 1233666766666666677899999996543211
Q ss_pred cccCCCCCcccceEeccCCCcEEecCceEEEEEcCCCEEEEeC
Q 013457 312 VGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGR 354 (442)
Q Consensus 312 LG~g~~~~~~~p~~v~~~~~~i~~G~~h~~alt~~g~v~~wG~ 354 (442)
+-. ...-......++......+.-..||.|..|--
T Consensus 329 ~~~--------~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 329 LRV--------LEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp EEE--------ECCCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred EEE--------EeCCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 100 00000111244555555666678899999963
No 21
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.60 E-value=7.9 Score=40.28 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=33.0
Q ss_pred CceEEEEEc-CCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEE----eCCCeEEEEecCCcEEEEeC
Q 013457 133 DSHCLAVTV-EGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA----AGAEHSVAVAEDGELYGWGW 202 (442)
Q Consensus 133 ~~h~~~lt~-~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia----~G~~h~~~Lt~~G~vy~wG~ 202 (442)
..|++++.. +|+||.+|-.....--..+ .. +-.+.......+. .-..|++++..+|+||++|-
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~~d-v~------~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG 508 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSD-NW------IFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGG 508 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBCCC-CE------EEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECC
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCcccc-EE------EEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECC
Confidence 468888776 8999999843211100000 00 0001111122211 23567777766999999983
No 22
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=93.42 E-value=4.5 Score=36.86 Aligned_cols=217 Identities=11% Similarity=0.024 Sum_probs=120.1
Q ss_pred CCCCEEEEEecC--CceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEcc---CCeeEEEEccCC
Q 013457 17 PFRPVLLISAGA--SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG---ADHTTAYSESCM 91 (442)
Q Consensus 17 ~~~~i~~is~G~--~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G---~~~~~~l~~~~G 91 (442)
..+.+..+.... .+.+++|++|++|.---.+ |- +.... . + .-++..|+.+.+- ..+.++++.+ |
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~---lp----~~~~~-~-l-l~~~e~i~~v~~~~~~~~~~v~~T~~-G 90 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQ---AL----QGSKV-S-L-KSREEKIVGAFIREKFGNRLLLATKK-G 90 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHH---HH----TSEEC-C-C-SSTTCCEEEEEEGGGSCSEEEEEETT-S
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhh---Cc----cCccc-c-c-CCCCCEEEEEECCcCCCCEEEEEeCC-C
Confidence 556677766554 4588899999999542111 00 00000 0 3 2245678887652 2467788888 9
Q ss_pred eEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEe--CCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCccccee
Q 013457 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQK 169 (442)
Q Consensus 92 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~--G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~ 169 (442)
.+.-.-..++-+- . .-...+....+..++.+.. +..+.+++|++|++|.+-....-.+|....... .
T Consensus 91 ~iKr~~l~~~~~~----~---~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~ 159 (276)
T 3no0_A 91 YVKKIPLAEFEYK----A---QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----G 159 (276)
T ss_dssp EEEEEEGGGTTTC----S---TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----C
T ss_pred EEEEEEHHHhhhh----c---CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----E
Confidence 9988765554310 0 0111222223445555433 456799999999999997655444443221111 1
Q ss_pred eecccCCcEEEEEeC--CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEE--ecCceEEEEeC
Q 013457 170 LQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVA--CGWRHTISVSS 245 (442)
Q Consensus 170 v~~~~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~--~G~~~s~~lt~ 245 (442)
+..-++.+|+.+... ..+.+++|++|.+.-.-..++-..+.+....... ..+.+++.+. .+....+++++
T Consensus 160 i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i------~~~~~lv~~~~~~~~~~i~~~t~ 233 (276)
T 3no0_A 160 IKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS------GTKDTLVDLIPIKEEVELLITTK 233 (276)
T ss_dssp CCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC------CSSSCEEEEEEESSEEEEEEEET
T ss_pred EccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE------cCCCcEEEEEEeCCCCEEEEEcC
Confidence 222234567665433 4578888999998877655443322221111111 1223344332 34567888999
Q ss_pred CCCEEE--EeCCCCCcCC
Q 013457 246 SGRLYS--YGWSKYGQLG 261 (442)
Q Consensus 246 ~G~vy~--~G~n~~gqlG 261 (442)
+|++.. +--++...+|
T Consensus 234 ~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 234 NGKAFYDKINQKDIPLST 251 (276)
T ss_dssp TSCEEEEEEEGGGSCBCC
T ss_pred CCeEEEeeeCHHHCCCcC
Confidence 999988 7655444443
No 23
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=92.70 E-value=5.6 Score=36.00 Aligned_cols=274 Identities=9% Similarity=0.018 Sum_probs=132.8
Q ss_pred EEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCCee-EEEEccCCeEEEEecCCCC
Q 013457 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHT-TAYSESCMQVYSWGWGDFG 102 (442)
Q Consensus 24 is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~-~~l~~~~G~vy~wG~n~~g 102 (442)
+..+.-..+++..||++++++......+..... ....+..... -...|..++...+.. ++...+ |.|..|-.....
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~d-g~i~iw~~~~~~ 83 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIP-RHARQINTLN-HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISHPG 83 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCC-SEEEEEEEEC-CSSCCCEEEECSSSSEEEEECB-SEEEEEETTSTT
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccC-Cccccceecc-CCCceEEEEEecCCcEEEEcCC-CeEEEEECCCCC
Confidence 344556778899999999888755443332111 1112222111 123566666544433 333335 999999654322
Q ss_pred ccCCCCCCCceeeEEec-ccCCCcEEEEEeC--CceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEE
Q 013457 103 RLGHGNSSDLFTPLPIK-ALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIK 179 (442)
Q Consensus 103 qlG~~~~~~~~~p~~v~-~~~~~~i~~Ia~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~ 179 (442)
.. . ....+. ......|..++.. ....+.-..+|.|+.|-..... .............|.
T Consensus 84 ~~-----~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~----------~~~~~~~~~~~~~i~ 145 (337)
T 1gxr_A 84 NK-----S---PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT----------PRIKAELTSSAPACY 145 (337)
T ss_dssp CC-----S---CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------EEEEEEECSSSCEE
T ss_pred ce-----e---eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC----------cceeeecccCCCceE
Confidence 10 0 001111 0123357777655 3345556678999999643310 001111111223466
Q ss_pred EEEeC--CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEec--CceEEEEeCCCCEEEEeCC
Q 013457 180 MVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACG--WRHTISVSSSGRLYSYGWS 255 (442)
Q Consensus 180 ~ia~G--~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~~s~~lt~~G~vy~~G~n 255 (442)
.++.. ..+.+.-..+|.|+.|-.... .....+ ......|..++.. ....+....+|.|+.|-..
T Consensus 146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~-----------~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQ-----------TLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTT-----------EEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCC-----------ceeeee-ecccCceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence 66553 345566668899999964321 111111 1122456665553 3345555678888888643
Q ss_pred CCCcCCCCCCCCccceeEecccCCCcEEEEEcC--CCceEEEeCCCcEEEeecCCCcccccCCCCCcccceEecc---CC
Q 013457 256 KYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKF---PL 330 (442)
Q Consensus 256 ~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~---~~ 330 (442)
... ....+.. ...+..++.. ....++-..+|.|+.|-...... ..+.. ..
T Consensus 214 ~~~-----------~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~v 268 (337)
T 1gxr_A 214 EGR-----------QLQQHDF--TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK------------YQLHLHESCV 268 (337)
T ss_dssp TTE-----------EEEEEEC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE------------EEECCCSSCE
T ss_pred CCc-----------eEeeecC--CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe------------EEEcCCccce
Confidence 211 1111111 1225555443 33444455688888886543211 11111 11
Q ss_pred CcEEec--CceEEEEEcCCCEEEEeCC
Q 013457 331 DQISCG--WRHTLAVTERQNVFSWGRG 355 (442)
Q Consensus 331 ~~i~~G--~~h~~alt~~g~v~~wG~n 355 (442)
..++.. ....+....+|.|+.|-..
T Consensus 269 ~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 269 LSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEECCCCCEEEEecCCCcEEEEECC
Confidence 133332 3344555667888888653
No 24
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=92.64 E-value=7.6 Score=37.41 Aligned_cols=239 Identities=11% Similarity=0.125 Sum_probs=125.4
Q ss_pred EEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCC-eeEEEEccCCeEEEEecC
Q 013457 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD-HTTAYSESCMQVYSWGWG 99 (442)
Q Consensus 21 i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~-~~~~l~~~~G~vy~wG~n 99 (442)
+..++......+.-..||.|.+|-.... .....+.. -...|..++...+ ..+.-..+ |.|..|-..
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~-----------~~~~~~~~-h~~~V~~l~~~~~~~l~s~s~d-g~i~vwd~~ 191 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINK-----------KFLLQLSG-HDGGVWALKYAHGGILVSGSTD-RTVRVWDIK 191 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTT-----------EEEEEECC-CSSCEEEEEECSTTEEEEEETT-SCEEEEETT
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCC-----------cEEEEEeC-CCcCEEEEEEcCCCEEEEEeCC-CCEEEEECC
Confidence 4455555555555668899999964321 11111111 1235777776544 33444455 999999643
Q ss_pred CCCccCCCCCCCceeeEEecccCCCcEEEEEeC----CceEEEEEcCCeEEEEeCCCCCCcCCCCCCC---------ccc
Q 013457 100 DFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG----DSHCLAVTVEGEVQSWGRNQNGQLGLGTTED---------SLV 166 (442)
Q Consensus 100 ~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G----~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~---------~~~ 166 (442)
... ....+. .....|..++.. ....+.-+.||.|..|-.............. ...
T Consensus 192 ~~~-----------~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
T 3v7d_B 192 KGC-----------CTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259 (464)
T ss_dssp TTE-----------EEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred CCc-----------EEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence 211 111111 123356666543 2556667789999999765432221100000 000
Q ss_pred ceeeecc--cCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecC--ceEEE
Q 013457 167 PQKLQAF--EGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGW--RHTIS 242 (442)
Q Consensus 167 p~~v~~~--~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~--~~s~~ 242 (442)
+..+..+ ....|..+.......+.-..||.|+.|-.... .+..........|..++... ...+.
T Consensus 260 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~s 327 (464)
T 3v7d_B 260 PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM------------KCLYILSGHTDRIYSTIYDHERKRCIS 327 (464)
T ss_dssp TTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred eEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC------------cEEEEecCCCCCEEEEEEcCCCCEEEE
Confidence 1011111 12357777777777888888999999964321 11111111123455555433 35556
Q ss_pred EeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCC
Q 013457 243 VSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNK 308 (442)
Q Consensus 243 lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~ 308 (442)
-..+|.|+.|-... ++ ....+. .....|..++....+.+.-..||.|..|-.+.
T Consensus 328 g~~dg~i~vwd~~~-~~----------~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 328 ASMDTTIRIWDLEN-GE----------LMYTLQ-GHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EETTSCEEEEETTT-TE----------EEEEEC-CCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred EeCCCcEEEEECCC-Cc----------EEEEEe-CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 67888888885422 10 111111 12234777777777777778899999997654
No 25
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=92.48 E-value=11 Score=38.80 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=32.0
Q ss_pred eEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEE----eCCCeEEEEecCCcEEEEeC
Q 013457 135 HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA----AGAEHSVAVAEDGELYGWGW 202 (442)
Q Consensus 135 h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia----~G~~h~~~Lt~~G~vy~wG~ 202 (442)
+++++..+|+||.+|-.... ....+.| .......+. .-..|++++..+|+||++|-
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~------~v~~yd~------~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAK------KTSLYDS------SSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp CEEEECTTSCEEEECSSSTT------CEEEEEG------GGTEEEECCCCSSCCSSCEEEECTTSCEEEECC
T ss_pred ccccCCCCCCEEEeCCCCCC------ceEEecC------cCCceeECCCCCccccccceEEecCCeEEEEeC
Confidence 34677789999999954321 0011111 111122211 23468888888999999985
No 26
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=90.24 E-value=10 Score=34.36 Aligned_cols=205 Identities=10% Similarity=0.043 Sum_probs=111.8
Q ss_pred CCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC---CceEEEEEcCCeEEEEeCCCCCCc
Q 013457 80 ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQSWGRNQNGQL 156 (442)
Q Consensus 80 ~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G---~~h~~~lt~~G~vy~wG~n~~gql 156 (442)
.++.+++|++ |++|.---.+. ...... -+ ...+++|+.+.+- ....+++|++|.+.-.-..++-+-
T Consensus 35 ~~~ll~fT~~-G~v~~~~~~~l---p~~~~~------~l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~ 103 (276)
T 3no0_A 35 TEGLFLVSNR-GRVYWIAGSQA---LQGSKV------SL-KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYK 103 (276)
T ss_dssp TSCEEEEETT-SEEEEECSHHH---HTSEEC------CC-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTC
T ss_pred CCEEEEEcCC-CeEEEEEhhhC---ccCccc------cc-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhh
Confidence 4557788888 99997632211 100000 03 3357788888762 357889999999988875444211
Q ss_pred CCCCCCCcccceeeecccCCcEEEEEe--CCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEE
Q 013457 157 GLGTTEDSLVPQKLQAFEGVSIKMVAA--GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVA 234 (442)
Q Consensus 157 G~~~~~~~~~p~~v~~~~~~~i~~ia~--G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~ 234 (442)
.. -...+..-++..++.+.. +.++.+++|++|++|.+-..+.-.+|....... .+...++++|+.+.
T Consensus 104 ~~-------G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~i~L~~~d~vv~~~ 172 (276)
T 3no0_A 104 AQ-------GMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----GIKLEKNDETSGLR 172 (276)
T ss_dssp ST-------TEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----CCCCCTTCCEEEEE
T ss_pred cC-------CeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----EEccCCCCEEEEEE
Confidence 00 011111123344555433 456799999999999987655433332221111 12222345666654
Q ss_pred ec--CceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEE--EcCCCceEEEeCCCcEEE--eecCC
Q 013457 235 CG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQI--SGGWRHTMAVTSDGKLYG--WGWNK 308 (442)
Q Consensus 235 ~G--~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I--~~G~~hs~~lt~~G~vy~--wG~n~ 308 (442)
.- ..+.+++|++|.+.-.--.++-..+.+....... ..+..+..+ ..+....++++++|++.- +-.++
T Consensus 173 ~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i------~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 173 IWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS------GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC------CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE------cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 43 3467888999998877655544333221110000 112223332 235567888899999988 65544
Q ss_pred Cccc
Q 013457 309 FGQV 312 (442)
Q Consensus 309 ~GqL 312 (442)
.-.+
T Consensus 247 i~~~ 250 (276)
T 3no0_A 247 IPLS 250 (276)
T ss_dssp SCBC
T ss_pred CCCc
Confidence 4333
No 27
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=89.92 E-value=13 Score=35.04 Aligned_cols=145 Identities=11% Similarity=0.030 Sum_probs=83.4
Q ss_pred EEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccC--CeeEEEEccCCeEEEEecCCC
Q 013457 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQVYSWGWGDF 101 (442)
Q Consensus 24 is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~--~~~~~l~~~~G~vy~wG~n~~ 101 (442)
++-...+.++...||.|++|-..... ....+.......|..|+... .+.++-..+ |.|+.|-....
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~~~ 166 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGS-----------VSALAETDESTYVASVKWSHDGSFLSVGLGN-GLVDIYDVESQ 166 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCC-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETT-SCEEEEETTTC
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCc-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCC-CeEEEEECcCC
Confidence 55556777888899999999754321 11112221234577766543 344444556 99999964322
Q ss_pred CccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEE
Q 013457 102 GRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV 181 (442)
Q Consensus 102 gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i 181 (442)
. ....+. .....|..++......+.-..+|.|+.|-.....+ ....+.. ....|..+
T Consensus 167 ~-----------~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~-~~~~v~~~ 223 (401)
T 4aez_A 167 T-----------KLRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH----------QIGTLQG-HSSEVCGL 223 (401)
T ss_dssp C-----------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEEC-CSSCEEEE
T ss_pred e-----------EEEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc----------eeeEEcC-CCCCeeEE
Confidence 1 111111 22346888888777777888999999997542211 0111111 12356666
Q ss_pred EeC--CCeEEEEecCCcEEEEeCC
Q 013457 182 AAG--AEHSVAVAEDGELYGWGWG 203 (442)
Q Consensus 182 a~G--~~h~~~Lt~~G~vy~wG~n 203 (442)
+.. ..+.+.-..||.|+.|-..
T Consensus 224 ~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 224 AWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETT
T ss_pred EEcCCCCEEEEEeCCCeEEEccCC
Confidence 654 3345555678999999643
No 28
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=88.58 E-value=14 Score=33.63 Aligned_cols=200 Identities=11% Similarity=0.046 Sum_probs=93.1
Q ss_pred CCCEEEEEecCCc--eEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEcc--CCeeEEEEccCCeE
Q 013457 18 FRPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQV 93 (442)
Q Consensus 18 ~~~i~~is~G~~~--~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G--~~~~~~l~~~~G~v 93 (442)
...|..++..... .+.-..||.|++|-.... .....+.. ....|..++.. ..+.+....+ |.|
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d-g~i 98 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-----------ERLGTLDG-HTGTIWSIDVDCFTKYCVTGSAD-YSI 98 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-----------CEEEEECC-CSSCEEEEEECTTSSEEEEEETT-TEE
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-----------hhhhhhhh-cCCcEEEEEEcCCCCEEEEEeCC-CeE
Confidence 4456666654433 233346788888853321 11112221 12357776655 3344455566 999
Q ss_pred EEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC--CceEEEEEcC-----CeEEEEeCCCCCCcCCCCCCCccc
Q 013457 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVE-----GEVQSWGRNQNGQLGLGTTEDSLV 166 (442)
Q Consensus 94 y~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt~~-----G~vy~wG~n~~gqlG~~~~~~~~~ 166 (442)
+.|-...... ...+. ....|..++.. ....++...+ |.|+.|-.........-.......
T Consensus 99 ~iwd~~~~~~-----------~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 165 (369)
T 3zwl_B 99 KLWDVSNGQC-----------VATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165 (369)
T ss_dssp EEEETTTCCE-----------EEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred EEEECCCCcE-----------EEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence 9996432111 11111 23356666544 3444555556 888888644322111000000000
Q ss_pred ceeeecc-cCCcEEEEEeC--CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEec--CceEE
Q 013457 167 PQKLQAF-EGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACG--WRHTI 241 (442)
Q Consensus 167 p~~v~~~-~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~~s~ 241 (442)
...+... ....+..++.. ....++-..+|.|+.|-....+ .+..........|..++.. ....+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~ 234 (369)
T 3zwl_B 166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-----------EYVDSIDLHEKSISDMQFSPDLTYFI 234 (369)
T ss_dssp SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT-----------EEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-----------EeEEEEecCCCceeEEEECCCCCEEE
Confidence 1111111 11145555443 3355556688999998543211 1111111123456555543 33445
Q ss_pred EEeCCCCEEEEeC
Q 013457 242 SVSSSGRLYSYGW 254 (442)
Q Consensus 242 ~lt~~G~vy~~G~ 254 (442)
....+|.|+.|=.
T Consensus 235 ~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 235 TSSRDTNSFLVDV 247 (369)
T ss_dssp EEETTSEEEEEET
T ss_pred EecCCceEEEEEC
Confidence 5567888888854
No 29
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=86.77 E-value=18 Score=32.88 Aligned_cols=154 Identities=9% Similarity=0.034 Sum_probs=83.6
Q ss_pred CCCEEEEEec------CCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecC-CCCCcEEEEEccCC------eeE
Q 013457 18 FRPVLLISAG------ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSA-LDGHEIVSVTCGAD------HTT 84 (442)
Q Consensus 18 ~~~i~~is~G------~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~-~~~~~i~~i~~G~~------~~~ 84 (442)
...|..|+.- ....++-..++.|.+|=......+ ........ .....|..++...+ +.+
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------RLLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------EeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 4577777765 445666668889999975432111 01111111 12235666665544 344
Q ss_pred EEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC---CceEEEEEcCCeEEEEeCCCCCCcCCCCC
Q 013457 85 AYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQSWGRNQNGQLGLGTT 161 (442)
Q Consensus 85 ~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G---~~h~~~lt~~G~vy~wG~n~~gqlG~~~~ 161 (442)
.-..+ |.|..|-..... ....+. .....|..++.. ....+.-..||.|+.|-.....
T Consensus 90 ~~~~d-g~i~v~d~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------- 149 (366)
T 3k26_A 90 VAGSR-GIIRIINPITMQ-----------CIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT------- 149 (366)
T ss_dssp EEETT-CEEEEECTTTCC-----------EEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-------
T ss_pred EecCC-CEEEEEEchhce-----------Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-------
Confidence 44556 999999543211 111111 123467787764 3456666789999999653311
Q ss_pred CCcccceeee--cccCCcEEEEEeC--CCeEEEEecCCcEEEEeCC
Q 013457 162 EDSLVPQKLQ--AFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWG 203 (442)
Q Consensus 162 ~~~~~p~~v~--~~~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~n 203 (442)
....+. ......|..++.. ..+.+....+|.|+.|-..
T Consensus 150 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 150 ----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp ----EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred ----EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 011110 1123357777654 3455566689999999654
No 30
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=86.47 E-value=21 Score=33.18 Aligned_cols=251 Identities=14% Similarity=0.034 Sum_probs=122.6
Q ss_pred CCCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCC---------eeEEE
Q 013457 16 APFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD---------HTTAY 86 (442)
Q Consensus 16 ~~~~~i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~---------~~~~l 86 (442)
.-...|..|+......+.-..||.|++|-...... .........+.. ....|..++...+ +.+..
T Consensus 14 ~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 14 AHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp CSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhcCeEEEEecCCeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEEE
Confidence 34567888887775555556899999997643210 001111222222 2235777665543 33444
Q ss_pred EccCCeEEEEecCCCCccCCCCCCCceeeEEecccC----CCcEEEEEeC------Cce-EEEEEcCCeEEEEeCCC---
Q 013457 87 SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALH----SLRVKQIACG------DSH-CLAVTVEGEVQSWGRNQ--- 152 (442)
Q Consensus 87 ~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~----~~~i~~Ia~G------~~h-~~~lt~~G~vy~wG~n~--- 152 (442)
..+ |.|+.|-...... ........+.... ...|..++.. ..+ .+....+|.|+.|-...
T Consensus 88 ~~d-g~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 88 SFS-GDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp ETT-SCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred cCC-CCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 456 9999995432111 0011122222221 2467777655 444 55567889999996543
Q ss_pred ---CCCcCCCCCCCcccce-eee------cccCCcEEEEEeCCC-eEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeE
Q 013457 153 ---NGQLGLGTTEDSLVPQ-KLQ------AFEGVSIKMVAAGAE-HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEK 221 (442)
Q Consensus 153 ---~gqlG~~~~~~~~~p~-~v~------~~~~~~i~~ia~G~~-h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~ 221 (442)
...+- ..|. .+. ......|..++...+ ..+.-..+|.|+.|-.... .....
T Consensus 161 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~ 222 (397)
T 1sq9_A 161 ESNSLTLN-------WSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL-----------RPLYN 222 (397)
T ss_dssp HHHHTTTC-------CCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT-----------EEEEE
T ss_pred ccccceee-------ccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC-----------ceeEE
Confidence 11111 1111 111 112234555555433 4444557888999864321 11111
Q ss_pred eeee--C---CceEEEEEec--CceEEEEeCC---CCEEEEeCCCCCcCCCCCCCCccceeEeccc------------CC
Q 013457 222 VATV--D---REKMVMVACG--WRHTISVSSS---GRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL------------RE 279 (442)
Q Consensus 222 v~~~--~---~~~i~~I~~G--~~~s~~lt~~---G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~------------~~ 279 (442)
+... . ...|..++.. ..+.++-..+ |.|+.|-..... ....+... ..
T Consensus 223 ~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 291 (397)
T 1sq9_A 223 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-----------RIGSLSVPTHSSQASLGEFAHS 291 (397)
T ss_dssp EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-----------EEEEECBC--------CCBSBS
T ss_pred EeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc-----------ccceeccCcccccccccccccC
Confidence 1110 1 3455555543 3344455566 788888643211 11111110 22
Q ss_pred CcEEEEEcC--CCceEEEeCCCcEEEeecCC
Q 013457 280 SFISQISGG--WRHTMAVTSDGKLYGWGWNK 308 (442)
Q Consensus 280 ~~i~~I~~G--~~hs~~lt~~G~vy~wG~n~ 308 (442)
..|..++.. ....+.-..+|.|+.|-...
T Consensus 292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 346666654 33444456789999996543
No 31
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=85.99 E-value=18 Score=32.07 Aligned_cols=185 Identities=10% Similarity=0.046 Sum_probs=99.9
Q ss_pred CcEEEEEccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEe---CCceEEEEEcCCeEEE
Q 013457 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC---GDSHCLAVTVEGEVQS 147 (442)
Q Consensus 71 ~~i~~i~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~---G~~h~~~lt~~G~vy~ 147 (442)
..|..++....+.+....+ |.|+.|-. + .+..........|..+.. .....+....+|.|+.
T Consensus 105 ~~i~~~~~~~~~l~~~~~d-~~i~~~d~---~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 169 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWD-KTAKVWKE---G-----------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL 169 (313)
T ss_dssp SCEEEEEEETTEEEEEETT-SEEEEEET---T-----------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cCEEEEEecCCEEEEEeCC-CCEEEEcC---C-----------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence 4688888877777777777 99999941 0 111111122335655554 4667777788999999
Q ss_pred EeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeC-CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeC
Q 013457 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG-AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVD 226 (442)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G-~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~ 226 (442)
|-... ....+.......|..++.. ....++...+|.|+.|-.... .+.......
T Consensus 170 ~d~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~------------~~~~~~~~~ 224 (313)
T 3odt_A 170 WQNDK-------------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG------------DVLRTYEGH 224 (313)
T ss_dssp EETTE-------------EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC------------CEEEEEECC
T ss_pred EecCc-------------eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch------------hhhhhhhcC
Confidence 95110 0111111122345555432 223666678899999964321 111111112
Q ss_pred CceEEEEEecCc-eEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCC-ceEEEeCCCcEEEe
Q 013457 227 REKMVMVACGWR-HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR-HTMAVTSDGKLYGW 304 (442)
Q Consensus 227 ~~~i~~I~~G~~-~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~-hs~~lt~~G~vy~w 304 (442)
...|..++.... ..++...+|.|+.|-.... .+..........|..++.-.. ..++...+|.|+.|
T Consensus 225 ~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw 292 (313)
T 3odt_A 225 ESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG------------SLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIF 292 (313)
T ss_dssp SSCEEEEEECTTSCEEEEETTSEEEEECTTTC------------CEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEE
T ss_pred CceEEEEEEecCCCEEEEecCCEEEEEECCCC------------ceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEE
Confidence 345666655433 4556678888998853221 111111122234766665433 35556788999999
Q ss_pred ecC
Q 013457 305 GWN 307 (442)
Q Consensus 305 G~n 307 (442)
-..
T Consensus 293 ~~~ 295 (313)
T 3odt_A 293 SQE 295 (313)
T ss_dssp ESC
T ss_pred eCC
Confidence 654
No 32
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=85.53 E-value=20 Score=32.14 Aligned_cols=189 Identities=11% Similarity=0.072 Sum_probs=95.1
Q ss_pred CcEEEEEccCC--eeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC--CceEEEEEcCCeEE
Q 013457 71 HEIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQ 146 (442)
Q Consensus 71 ~~i~~i~~G~~--~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt~~G~vy 146 (442)
..|..++...+ +.+....+ |.|+.|-..... .............|..++.. ..+.+.-+.+|.|+
T Consensus 98 ~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 166 (337)
T 1gxr_A 98 NYIRSCKLLPDGCTLIVGGEA-STLSIWDLAAPT----------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166 (337)
T ss_dssp SBEEEEEECTTSSEEEEEESS-SEEEEEECCCC------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcEEEEEEcCCCCEEEEEcCC-CcEEEEECCCCC----------cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 35666665543 33444556 999999543210 01111111123356666654 34566667889999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeC--CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeee
Q 013457 147 SWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVAT 224 (442)
Q Consensus 147 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~ 224 (442)
.|-..... ....+.. ....|..++.. ....+....+|.|+.|-.... .....+.
T Consensus 167 ~~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----------~~~~~~~- 222 (337)
T 1gxr_A 167 VWDLHNQT-----------LVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG-----------RQLQQHD- 222 (337)
T ss_dssp EEETTTTE-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-----------EEEEEEE-
T ss_pred EEeCCCCc-----------eeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEEECCCC-----------ceEeeec-
Confidence 99653210 0111111 22356666654 335556668999999954321 0111111
Q ss_pred eCCceEEEEEec--CceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcC--CCceEEEeCCCc
Q 013457 225 VDREKMVMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGK 300 (442)
Q Consensus 225 ~~~~~i~~I~~G--~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~hs~~lt~~G~ 300 (442)
....+..++.. ....++-..+|.++.|-..... ...+.. ....|..++.. ....+....+|.
T Consensus 223 -~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 288 (337)
T 1gxr_A 223 -FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------------KYQLHL-HESCVLSLKFAYCGKWFVSTGKDNL 288 (337)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------------EEEECC-CSSCEEEEEECTTSSEEEEEETTSE
T ss_pred -CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------------eEEEcC-CccceeEEEECCCCCEEEEecCCCc
Confidence 12334444432 3344555677888888543211 111111 12236666654 334445567899
Q ss_pred EEEeecCC
Q 013457 301 LYGWGWNK 308 (442)
Q Consensus 301 vy~wG~n~ 308 (442)
|+.|-...
T Consensus 289 i~~~~~~~ 296 (337)
T 1gxr_A 289 LNAWRTPY 296 (337)
T ss_dssp EEEEETTT
T ss_pred EEEEECCC
Confidence 99996543
No 33
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=84.71 E-value=21 Score=31.65 Aligned_cols=268 Identities=13% Similarity=0.053 Sum_probs=134.0
Q ss_pred CCCCCEEEEEec-CCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEcc--CCeeEEEEccCCe
Q 013457 16 APFRPVLLISAG-ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQ 92 (442)
Q Consensus 16 ~~~~~i~~is~G-~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G--~~~~~~l~~~~G~ 92 (442)
.-...|..++.- ....+.-..||.|.+|-.... .....+... ...|..++.. ..+.+.-..+ |.
T Consensus 16 ~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~-----------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-g~ 82 (313)
T 3odt_A 16 GHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ-----------WLGTVVYTG-QGFLNSVCYDSEKELLLFGGKD-TM 82 (313)
T ss_dssp CCSSCEEEEEEEETTEEEEEETTSEEEEEEESSS-----------EEEEEEEEC-SSCEEEEEEETTTTEEEEEETT-SC
T ss_pred CCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCC-----------EEEEEeecC-CccEEEEEECCCCCEEEEecCC-Ce
Confidence 334567777652 233444457899999964221 111222211 2345555543 3344444555 88
Q ss_pred EEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeec
Q 013457 93 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA 172 (442)
Q Consensus 93 vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 172 (442)
|..|-...... ..+..........|..++......+.-..+|.|+.|-. + .+.....
T Consensus 83 i~~~~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~---~-----------~~~~~~~ 139 (313)
T 3odt_A 83 INGVPLFATSG---------EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKE---G-----------SLVYNLQ 139 (313)
T ss_dssp EEEEETTCCTT---------SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEET---T-----------EEEEEEE
T ss_pred EEEEEeeecCC---------CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcC---C-----------cEEEecc
Confidence 88885433110 01111111123467888887777888889999999951 0 0111111
Q ss_pred ccCCcEEEEEe---CCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecC-ceEEEEeCCCC
Q 013457 173 FEGVSIKMVAA---GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGW-RHTISVSSSGR 248 (442)
Q Consensus 173 ~~~~~i~~ia~---G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~-~~s~~lt~~G~ 248 (442)
.....+..+.. .....+....+|.|+.|-.. .....+.......|..++... ...++...+|.
T Consensus 140 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~ 206 (313)
T 3odt_A 140 AHNASVWDAKVVSFSENKFLTASADKTIKLWQND-------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGL 206 (313)
T ss_dssp CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-------------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSE
T ss_pred cCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-------------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCe
Confidence 12234544443 56667777889999999411 011111111223444443322 23555678888
Q ss_pred EEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCC-ceEEEeCCCcEEEeecCCCcccccCCCCCcccceEec
Q 013457 249 LYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR-HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVK 327 (442)
Q Consensus 249 vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~-hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~ 327 (442)
|+.|-..... ....+. .....|..++.... ..++...+|.|+.|-....-.+ ..+.
T Consensus 207 i~i~d~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-----------~~~~ 263 (313)
T 3odt_A 207 IKLVDMHTGD-----------VLRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLK-----------QVIT 263 (313)
T ss_dssp EEEEETTTCC-----------EEEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEE-----------EEEE
T ss_pred EEEEECCchh-----------hhhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCCCcee-----------EEEe
Confidence 9998643211 111111 12233666665433 4555568899999964332111 1111
Q ss_pred cCC---CcEEecC-ceEEEEEcCCCEEEEeCC
Q 013457 328 FPL---DQISCGW-RHTLAVTERQNVFSWGRG 355 (442)
Q Consensus 328 ~~~---~~i~~G~-~h~~alt~~g~v~~wG~n 355 (442)
... ..++... ...++...||.|+.|=-+
T Consensus 264 ~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 264 LPAISIWSVDCMSNGDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp CSSSCEEEEEECTTSCEEEEETTSCEEEEESC
T ss_pred ccCceEEEEEEccCCCEEEEeCCCcEEEEeCC
Confidence 111 1333322 235566778888888653
No 34
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=83.95 E-value=56 Score=35.99 Aligned_cols=219 Identities=15% Similarity=0.157 Sum_probs=99.7
Q ss_pred eEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC-CceEEEEEcCCeEEEEeCCCCCCcCCCCC
Q 013457 83 TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-DSHCLAVTVEGEVQSWGRNQNGQLGLGTT 161 (442)
Q Consensus 83 ~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G-~~h~~~lt~~G~vy~wG~n~~gqlG~~~~ 161 (442)
.+....+ |.|..|-...... ..+. .....|..++.. +...+....+|.|+.|-......
T Consensus 1018 l~s~~~d-g~i~vwd~~~~~~------------~~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~------ 1077 (1249)
T 3sfz_A 1018 LISSSED-SVIQVWNWQTGDY------------VFLQ-AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI------ 1077 (1249)
T ss_dssp EEEECSS-SBEEEEETTTTEE------------ECCB-CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCC------
T ss_pred EEEEcCC-CEEEEEECCCCce------------EEEe-cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCce------
Confidence 3333455 8999996543211 1111 122356666543 44566777899999997543210
Q ss_pred CCcccceeeecccCCcEEEEEe--CCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecC--
Q 013457 162 EDSLVPQKLQAFEGVSIKMVAA--GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGW-- 237 (442)
Q Consensus 162 ~~~~~p~~v~~~~~~~i~~ia~--G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~-- 237 (442)
...+.. ....|..++. .....+.-..||.|+.|-......+.. +. .....|..++...
T Consensus 1078 -----~~~~~~-~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-----------l~-~h~~~v~~~~~s~dg 1139 (1249)
T 3sfz_A 1078 -----ERDFTC-HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-----------LK-GHNGCVRCSAFSLDG 1139 (1249)
T ss_dssp -----CEEEEC-CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-----------CC-CCSSCEEEEEECSSS
T ss_pred -----eEEEcc-cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee-----------ec-cCCCcEEEEEECCCC
Confidence 111111 1112333333 223445556778888885432211110 00 1112344444432
Q ss_pred ceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEec---ccCCCcEEEEEcCCCceEEEeCCCcEEEeecCCCccccc
Q 013457 238 RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLE---ALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGV 314 (442)
Q Consensus 238 ~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~---~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG~ 314 (442)
...+.-..+|.|+.|-......+. ...|.... ......|..++......++++.+|.|..|-......+..
T Consensus 1140 ~~lat~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~g~~~~~ 1213 (1249)
T 3sfz_A 1140 ILLATGDDNGEIRIWNVSDGQLLH------SCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDSSQT 1213 (1249)
T ss_dssp SEEEEEETTSCCCEEESSSSCCCC------CCCCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCSSSCBCCCC
T ss_pred CEEEEEeCCCEEEEEECCCCceEE------EeccccccccccccCceEEEEEECCCCCEEEECCCeEEEEECCCCceeee
Confidence 234444678888888643322111 11111100 111223555655544444455568888886543222211
Q ss_pred CCCCCcccceEeccCCC--cEEecCceEEEEEcCCCEEEEe
Q 013457 315 GDNVDHCSPVQVKFPLD--QISCGWRHTLAVTERQNVFSWG 353 (442)
Q Consensus 315 g~~~~~~~p~~v~~~~~--~i~~G~~h~~alt~~g~v~~wG 353 (442)
-.. . ..... .++......+....+|.|+.|=
T Consensus 1214 ~~~--~------~~~i~~~~~s~dg~~l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A 1214 FYT--N------GTNLKKIHVSPDFRTYVTVDNLGILYILQ 1246 (1249)
T ss_dssp CCC--S------SCCCCCCEECSSSCCEEEECTTCCEEEEC
T ss_pred eec--c------CCcccEEEECCCCCEEEEecCCcEEEEEe
Confidence 000 0 11112 2333344556677788999884
No 35
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=82.22 E-value=33 Score=32.14 Aligned_cols=147 Identities=8% Similarity=-0.040 Sum_probs=83.4
Q ss_pred EEEEccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC--CceEEEEEcCCeEEEEeCC
Q 013457 74 VSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRN 151 (442)
Q Consensus 74 ~~i~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt~~G~vy~wG~n 151 (442)
..++......++...+ |.|+.|-..... ....+.......|..++.. ..+.++-+.+|.|..|-..
T Consensus 97 ~~~~~s~~~l~~~~~d-~~v~lw~~~~~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 97 NLLDWSNLNVVAVALE-RNVYVWNADSGS-----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp BCEEECTTSEEEEEET-TEEEEEETTTCC-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEeecCCCEEEEECC-CeEEEeeCCCCc-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 3355556667777778 999999653311 1112222234467777654 3455666779999999653
Q ss_pred CCCCcCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEE
Q 013457 152 QNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMV 231 (442)
Q Consensus 152 ~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~ 231 (442)
.... ...+. .....|..++......+.-..+|.|+.|-....+ .+..........|.
T Consensus 165 ~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~ 221 (401)
T 4aez_A 165 SQTK-----------LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-----------HQIGTLQGHSSEVC 221 (401)
T ss_dssp TCCE-----------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-----------CEEEEEECCSSCEE
T ss_pred CCeE-----------EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCc-----------ceeeEEcCCCCCee
Confidence 3210 11111 1233677777767777777889999999643211 11111111223555
Q ss_pred EEEec--CceEEEEeCCCCEEEEeCC
Q 013457 232 MVACG--WRHTISVSSSGRLYSYGWS 255 (442)
Q Consensus 232 ~I~~G--~~~s~~lt~~G~vy~~G~n 255 (442)
.++.. ..+.+.-..+|.|+.|-..
T Consensus 222 ~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 222 GLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 55543 3345555678899998643
No 36
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=82.01 E-value=29 Score=31.39 Aligned_cols=151 Identities=11% Similarity=0.065 Sum_probs=81.7
Q ss_pred CCCcEEEEEeCCc-----eEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCC--CeEEEEecC
Q 013457 122 HSLRVKQIACGDS-----HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA--EHSVAVAED 194 (442)
Q Consensus 122 ~~~~i~~Ia~G~~-----h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~--~h~~~Lt~~ 194 (442)
....|..|+.... ..+.-..||.|..|-....++ .....+.. ....|..++... ...+....|
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCC
Confidence 3447888887754 455556789999997543211 11111221 233577766543 355666789
Q ss_pred CcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEe--cCc--eEEEEeCCCCEEEEeCCCCCcCCCCCCCCccc
Q 013457 195 GELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVAC--GWR--HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLV 270 (442)
Q Consensus 195 G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~--G~~--~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~ 270 (442)
|.|..|-.... .+..+. .....|..+.. ... ..+....+|.|+.|=......
T Consensus 108 g~v~iwd~~~~------------~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----------- 163 (368)
T 3mmy_A 108 KTAKMWDLSSN------------QAIQIA-QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP----------- 163 (368)
T ss_dssp SEEEEEETTTT------------EEEEEE-ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-----------
T ss_pred CcEEEEEcCCC------------Cceeec-cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-----------
Confidence 99999964321 111111 12345666654 322 344556788899985322110
Q ss_pred eeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCC
Q 013457 271 PCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNK 308 (442)
Q Consensus 271 p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~ 308 (442)
...+.... .+..+..-....++.+.++.++.|-...
T Consensus 164 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 164 MMVLQLPE--RCYCADVIYPMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp SEEEECSS--CEEEEEEETTEEEEEEGGGCEEEEECSS
T ss_pred EEEEecCC--CceEEEecCCeeEEEeCCCcEEEEEecc
Confidence 11111111 2444555556677778888999887543
No 37
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=81.76 E-value=33 Score=31.85 Aligned_cols=226 Identities=12% Similarity=-0.005 Sum_probs=119.3
Q ss_pred CCCEEEEE--ecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccc--eeecCCCCCcEEEEEccC-----CeeEEEEc
Q 013457 18 FRPVLLIS--AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTCGA-----DHTTAYSE 88 (442)
Q Consensus 18 ~~~i~~is--~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P--~~v~~~~~~~i~~i~~G~-----~~~~~l~~ 88 (442)
.+.+..+. ....+.+++|+.|++|..--.+ |-.......-.| ..++.-++.+|+.+.... .+.+++++
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~---lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~ 117 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYD---LPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATR 117 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGG---SCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEET
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHH---CcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcC
Confidence 34455443 4566778899999999775322 111100111112 123333457788876654 45677777
Q ss_pred cCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEE--EeCCceEEEEEcCCeEEEEeCC--CCCCcCCCCCCCc
Q 013457 89 SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRN--QNGQLGLGTTEDS 164 (442)
Q Consensus 89 ~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I--a~G~~h~~~lt~~G~vy~wG~n--~~gqlG~~~~~~~ 164 (442)
+ |.+.-.-..++-... ..-...+....+..++.+ +.+..+.+++|++|++|.+-.. .--.+|......
T Consensus 118 ~-G~iKr~~l~~~~~~~------r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv- 189 (327)
T 3uc1_A 118 N-GLVKKSKLTDFDSNR------SGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV- 189 (327)
T ss_dssp T-SEEEEEEGGGGCCCC------SSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE-
T ss_pred C-CEEEEeEHHHhhccc------cCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe-
Confidence 7 988877644432110 001111222233445543 4467889999999999999876 443344332211
Q ss_pred ccceeeecccCCcEEEEEeC--CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeC-CceEEEE--EecCce
Q 013457 165 LVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVD-REKMVMV--ACGWRH 239 (442)
Q Consensus 165 ~~p~~v~~~~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~-~~~i~~I--~~G~~~ 239 (442)
..+..-++..|+.+..- ..+.+++|++|.+.-.-...+-..+.+...... +...+ +..++.+ ..+...
T Consensus 190 ---~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~----~~l~~~~d~lv~~~~~~~~~~ 262 (327)
T 3uc1_A 190 ---QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT----VMYDRRRGRLVGALIVDDDSE 262 (327)
T ss_dssp ---ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES----SCCCTTTCSEEEEEEECTTCE
T ss_pred ---eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE----EEecCCCCeEEEEEEeCCCcc
Confidence 11222345677776654 346888899998776654333221111110000 00001 1223332 235678
Q ss_pred EEEEeCCCCEEEEeCCCCCcCC
Q 013457 240 TISVSSSGRLYSYGWSKYGQLG 261 (442)
Q Consensus 240 s~~lt~~G~vy~~G~n~~gqlG 261 (442)
.++++++|++..+-...-..+|
T Consensus 263 i~l~T~~G~~ir~~~~~i~~~g 284 (327)
T 3uc1_A 263 LYAVTSGGGVIRTAARQVRKAG 284 (327)
T ss_dssp EEEEEGGGCEEEEEGGGSCBCC
T ss_pred EEEEcCCCeEEEEehhhccccC
Confidence 8899999999888655444443
No 38
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=81.45 E-value=31 Score=31.25 Aligned_cols=192 Identities=11% Similarity=0.098 Sum_probs=100.4
Q ss_pred CcEEEEEccCC----eeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC--CceEEEEEcCCe
Q 013457 71 HEIVSVTCGAD----HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGE 144 (442)
Q Consensus 71 ~~i~~i~~G~~----~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt~~G~ 144 (442)
..|..|+...+ ..++....+|.|..|-....++ .....+.. ....|..++.. ..+.+....||.
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCCCc
Confidence 57888888765 3344433339999996543221 11112221 23367777664 345666778999
Q ss_pred EEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEe--CCC--eEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeee
Q 013457 145 VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA--GAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPE 220 (442)
Q Consensus 145 vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~--G~~--h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~ 220 (442)
|..|-..... ...+.. ....|..++. ..+ ..+.-..||.|+.|-....-. ..
T Consensus 110 v~iwd~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~ 165 (368)
T 3mmy_A 110 AKMWDLSSNQ------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-----------MM 165 (368)
T ss_dssp EEEEETTTTE------------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-----------SE
T ss_pred EEEEEcCCCC------------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-----------EE
Confidence 9999654321 111111 2335777764 333 344556789999995322100 01
Q ss_pred EeeeeCCceEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCC--CcEEEEEcCCCc----eEE
Q 013457 221 KVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRE--SFISQISGGWRH----TMA 294 (442)
Q Consensus 221 ~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~--~~i~~I~~G~~h----s~~ 294 (442)
.+. . ...+..+..-....++...++.++.|-...... ....+..... ..+..+...... .++
T Consensus 166 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (368)
T 3mmy_A 166 VLQ-L-PERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKPTGFAL 233 (368)
T ss_dssp EEE-C-SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred EEe-c-CCCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence 111 1 124555555566777788889998886532111 1111111111 113333333332 555
Q ss_pred EeCCCcEEEeecCC
Q 013457 295 VTSDGKLYGWGWNK 308 (442)
Q Consensus 295 lt~~G~vy~wG~n~ 308 (442)
-..+|.|..|-.+.
T Consensus 234 ~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 234 GSIEGRVAIHYINP 247 (368)
T ss_dssp EETTSEEEEEESSC
T ss_pred ecCCCcEEEEecCC
Confidence 67889999987654
No 39
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=79.92 E-value=38 Score=31.41 Aligned_cols=220 Identities=11% Similarity=0.011 Sum_probs=115.1
Q ss_pred EEccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceee--EEecccCCCcEEEEEeC-----CceEEEEEcCCeEEEE
Q 013457 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTP--LPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSW 148 (442)
Q Consensus 76 i~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p--~~v~~~~~~~i~~Ia~G-----~~h~~~lt~~G~vy~w 148 (442)
.+...++.+++++. |++|..-..+.-..+.. ..-.| ..+....+++|+.+..- ....+++|++|.+.-.
T Consensus 49 ~~~t~d~ll~fT~~-Gr~y~~~~~~lp~~~r~---~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~ 124 (327)
T 3uc1_A 49 VCSTHDLILFFTTQ-GRVYRAKAYDLPEASRT---ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKS 124 (327)
T ss_dssp EEETTSEEEEEETT-SEEEEEEGGGSCBCCSS---SCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEE
T ss_pred EeCCCCEEEEEeCC-CeEEEEEHHHCcCCCcc---CCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEe
Confidence 34556667778888 99998864433222111 11111 12333357788888664 3468899999999877
Q ss_pred eCCCCCCcCCCCCCCcccceeeecccCCcEEE--EEeCCCeEEEEecCCcEEEEeCC--CCCCcCCCCCCCeeeeeEeee
Q 013457 149 GRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM--VAAGAEHSVAVAEDGELYGWGWG--RYGNLGLGDRNDRLIPEKVAT 224 (442)
Q Consensus 149 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--ia~G~~h~~~Lt~~G~vy~wG~n--~~GqlG~~~~~~~~~p~~v~~ 224 (442)
-...+-.... . -...+..-++..++. +..+.++.+++|++|++|.+-.. .--.+|...... ..+..
T Consensus 125 ~l~~~~~~~r----~--G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv----~~i~L 194 (327)
T 3uc1_A 125 KLTDFDSNRS----G--GIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV----QGMRF 194 (327)
T ss_dssp EGGGGCCCCS----S--CEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE----ESSCC
T ss_pred EHHHhhcccc----C--ceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe----eeecC
Confidence 6443311100 0 000111112333433 44577889999999999998766 332233221111 11222
Q ss_pred eCCceEEEEEec--CceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEE--EEcCCCceEEEeCCCc
Q 013457 225 VDREKMVMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ--ISGGWRHTMAVTSDGK 300 (442)
Q Consensus 225 ~~~~~i~~I~~G--~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--I~~G~~hs~~lt~~G~ 300 (442)
..+++|+.+..- ..+.+++|++|.+.-.--.++-..+.+...-. -.++..- +..+.. +..+....++++++|+
T Consensus 195 ~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~--~~~l~~~-~d~lv~~~~~~~~~~i~l~T~~G~ 271 (327)
T 3uc1_A 195 NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL--TVMYDRR-RGRLVGALIVDDDSELYAVTSGGG 271 (327)
T ss_dssp CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE--SSCCCTT-TCSEEEEEEECTTCEEEEEEGGGC
T ss_pred CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE--EEEecCC-CCeEEEEEEeCCCccEEEEcCCCe
Confidence 345667776554 24678888999777665443332221110000 0001000 112322 2345678888999999
Q ss_pred EEEeecCCCccc
Q 013457 301 LYGWGWNKFGQV 312 (442)
Q Consensus 301 vy~wG~n~~GqL 312 (442)
+.-+-..+.-.+
T Consensus 272 ~ir~~~~~i~~~ 283 (327)
T 3uc1_A 272 VIRTAARQVRKA 283 (327)
T ss_dssp EEEEEGGGSCBC
T ss_pred EEEEehhhcccc
Confidence 887755444333
No 40
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=79.56 E-value=39 Score=31.22 Aligned_cols=110 Identities=10% Similarity=-0.041 Sum_probs=56.3
Q ss_pred CCcEEEEEeCCc-eEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecc--c---CCcEEEEEeC--CCeEEEEecC
Q 013457 123 SLRVKQIACGDS-HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAF--E---GVSIKMVAAG--AEHSVAVAED 194 (442)
Q Consensus 123 ~~~i~~Ia~G~~-h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~--~---~~~i~~ia~G--~~h~~~Lt~~ 194 (442)
...|..++.... ..+.-..+|.|+.|-..... ....+... . ...|..++.. ..+.+.-..+
T Consensus 186 ~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d 254 (397)
T 1sq9_A 186 SQFATSVDISERGLIATGFNNGTVQISELSTLR-----------PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 254 (397)
T ss_dssp CCCCCEEEECTTSEEEEECTTSEEEEEETTTTE-----------EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred CCCceEEEECCCceEEEEeCCCcEEEEECCCCc-----------eeEEEeccccccccCCccceEEECCCCCEEEEEecC
Confidence 335666665433 44455678999999653310 01111110 1 3356666653 3445555567
Q ss_pred ---CcEEEEeCCCCCCcCCCCCCCeeeeeEeeee------------CCceEEEEEec--CceEEEEeCCCCEEEEeC
Q 013457 195 ---GELYGWGWGRYGNLGLGDRNDRLIPEKVATV------------DREKMVMVACG--WRHTISVSSSGRLYSYGW 254 (442)
Q Consensus 195 ---G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~------------~~~~i~~I~~G--~~~s~~lt~~G~vy~~G~ 254 (442)
|.|+.|-..... ....+... ....|..++.. ....+.-..+|.|+.|-.
T Consensus 255 ~~~g~i~i~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 255 NSFGCITLYETEFGE-----------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp TTEEEEEEEETTTCC-----------EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCCceEEEEECCCCc-----------ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 889998643211 01111110 22456665554 334555567888888864
No 41
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=77.95 E-value=56 Score=32.20 Aligned_cols=110 Identities=13% Similarity=0.023 Sum_probs=58.5
Q ss_pred cEEEEEeCCCeEEEEec-CCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEec--CceEEEEeCCCCEEEEe
Q 013457 177 SIKMVAAGAEHSVAVAE-DGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACG--WRHTISVSSSGRLYSYG 253 (442)
Q Consensus 177 ~i~~ia~G~~h~~~Lt~-~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~~s~~lt~~G~vy~~G 253 (442)
.+..++......+.-.. +|.|+.|-.... ...+ .........|..++.. ..+.+.-..+|.|+.|-
T Consensus 448 ~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~----------~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 516 (615)
T 1pgu_A 448 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDL----------EVSF-DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYD 516 (615)
T ss_dssp CEEEEEECSSEEEEEETTTSCEEEEETTEE----------EEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CceEEEEcCCEEEEeecCCCeEEEEECCCc----------cccc-cccCCccCceEEEEECCCCCEEEEcCCCCeEEEee
Confidence 46666665556666666 899999864321 0000 1111112345555553 34555666889999996
Q ss_pred CCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCC------------CceEEEeCCCcEEEeecCC
Q 013457 254 WSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW------------RHTMAVTSDGKLYGWGWNK 308 (442)
Q Consensus 254 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~------------~hs~~lt~~G~vy~wG~n~ 308 (442)
......+ ..+.......|..++... ...+.-..||.|+.|-...
T Consensus 517 ~~~~~~~-----------~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 572 (615)
T 1pgu_A 517 LQSREVK-----------TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 572 (615)
T ss_dssp TTTTEEE-----------ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred CCCCcce-----------eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCC
Confidence 5321111 111111223466666533 3444456789999997654
No 42
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=75.73 E-value=56 Score=31.05 Aligned_cols=242 Identities=10% Similarity=0.069 Sum_probs=122.1
Q ss_pred CCCEEEEEecCC-ceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEcc---C-CeeEEEEccCCe
Q 013457 18 FRPVLLISAGAS-HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG---A-DHTTAYSESCMQ 92 (442)
Q Consensus 18 ~~~i~~is~G~~-~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G---~-~~~~~l~~~~G~ 92 (442)
...|..++.... ..+.-..||.|.+|--... .....+.. ....|..++.. . .+.+.-..+ |.
T Consensus 162 ~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~-----------~~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s~d-~~ 228 (464)
T 3v7d_B 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKG-----------CCTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRD-NT 228 (464)
T ss_dssp SSCEEEEEECSTTEEEEEETTSCEEEEETTTT-----------EEEEEECC-CSSCEEEEEEEESSSCEEEEEEETT-SC
T ss_pred CcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC-----------cEEEEECC-CCCccEEEEEecCCCCCEEEEEcCC-Cc
Confidence 445666665433 3333447888888854321 11111111 12346655543 2 344445556 99
Q ss_pred EEEEecCCCCccCCCCCC---Cc------eeeEEecc--cCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCC
Q 013457 93 VYSWGWGDFGRLGHGNSS---DL------FTPLPIKA--LHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTT 161 (442)
Q Consensus 93 vy~wG~n~~gqlG~~~~~---~~------~~p~~v~~--~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~ 161 (442)
|..|-............. .. ..+..+.. -....|..++......+.-..||.|+.|-......
T Consensus 229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~------ 302 (464)
T 3v7d_B 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC------ 302 (464)
T ss_dssp EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE------
T ss_pred EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE------
Confidence 999975543222110000 00 00001111 12335777777777888888999999996532110
Q ss_pred CCcccceeeecccCCcEEEEEeC--CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCce
Q 013457 162 EDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRH 239 (442)
Q Consensus 162 ~~~~~p~~v~~~~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~ 239 (442)
...+.. ....|..++.. ....+.-..||.|+.|-... + .+..........|..++....+
T Consensus 303 -----~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~-----------~~~~~~~~h~~~v~~~~~~~~~ 364 (464)
T 3v7d_B 303 -----LYILSG-HTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-G-----------ELMYTLQGHTALVGLLRLSDKF 364 (464)
T ss_dssp -----EEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-T-----------EEEEEECCCSSCEEEEEECSSE
T ss_pred -----EEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-C-----------cEEEEEeCCCCcEEEEEEcCCE
Confidence 011111 12346555543 34566667889999995422 1 1111111123457777777777
Q ss_pred EEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCC
Q 013457 240 TISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNK 308 (442)
Q Consensus 240 s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~ 308 (442)
.+....+|.|..|-.....+ ...........+..++.... .++...+|.|+.|-...
T Consensus 365 l~s~s~dg~v~vwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~i~iwd~~~ 421 (464)
T 3v7d_B 365 LVSAAADGSIRGWDANDYSR-----------KFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLRS 421 (464)
T ss_dssp EEEEETTSEEEEEETTTCCE-----------EEEEECTTCCCEEEEEECSS-EEEEEETTEEEEEETTT
T ss_pred EEEEeCCCcEEEEECCCCce-----------eeeecCCCCccEEEEEeCCC-EEEEecCCeEEEEECCC
Confidence 77888999999996543211 11111111222444444333 34444588898886543
No 43
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=75.54 E-value=50 Score=30.37 Aligned_cols=296 Identities=10% Similarity=-0.001 Sum_probs=136.3
Q ss_pred CCCCEEEEEecC---CceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeec----CCCCCcEEEEEcc---CCeeEEE
Q 013457 17 PFRPVLLISAGA---SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLS----ALDGHEIVSVTCG---ADHTTAY 86 (442)
Q Consensus 17 ~~~~i~~is~G~---~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~----~~~~~~i~~i~~G---~~~~~~l 86 (442)
-...|..++... ...+.-..||.|.+|-.........- .......+. ......|..++.. ....+..
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY---TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE---EECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE---eccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 456788887754 33334447999999975432211110 000000000 0122457777764 3345555
Q ss_pred EccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCC-----ceEEEEEcCCeEEEEeCCCCCCcCCCCC
Q 013457 87 SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-----SHCLAVTVEGEVQSWGRNQNGQLGLGTT 161 (442)
Q Consensus 87 ~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~-----~h~~~lt~~G~vy~wG~n~~gqlG~~~~ 161 (442)
..+ |.|..|-..... ....+. ....+..+.... ...++-..+|.|+.|-......
T Consensus 119 ~~d-~~i~iwd~~~~~-----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~------ 178 (408)
T 4a11_B 119 SFD-KTLKVWDTNTLQ-----------TADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC------ 178 (408)
T ss_dssp ETT-SEEEEEETTTTE-----------EEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC------
T ss_pred eCC-CeEEEeeCCCCc-----------cceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce------
Confidence 566 999999643211 111111 122455554432 2556667889999996543211
Q ss_pred CCcccceeeecccCCcEEEEEeCCCe---EEEEecCCcEEEEeCCCCCCc-CCC---CCCCeeeeeEeeeeCCceEEEEE
Q 013457 162 EDSLVPQKLQAFEGVSIKMVAAGAEH---SVAVAEDGELYGWGWGRYGNL-GLG---DRNDRLIPEKVATVDREKMVMVA 234 (442)
Q Consensus 162 ~~~~~p~~v~~~~~~~i~~ia~G~~h---~~~Lt~~G~vy~wG~n~~Gql-G~~---~~~~~~~p~~v~~~~~~~i~~I~ 234 (442)
...+.. ....|..++..... .+.-..+|.|+.|-....... -.- .......+..........|..++
T Consensus 179 -----~~~~~~-~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 179 -----SHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp -----CEEECC-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred -----eeeecC-CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 111111 12356666654432 445678999999975432110 000 00000000000011123455555
Q ss_pred ecC--ceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCCCccc
Q 013457 235 CGW--RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQV 312 (442)
Q Consensus 235 ~G~--~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqL 312 (442)
... .+.+....+|.++.|-......+-.-. . ...........+..........++...++.|+.|-....-.+
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 327 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNY--G---KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI 327 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCBCCCCC--C---CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE
T ss_pred EcCCCCEEEEecCCCeEEEEECCCCccceecc--c---cccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce
Confidence 533 355666788999999754322211000 0 000000011112222223444555677899999975432211
Q ss_pred ccCCCCCcccceEecc---CCCcEEec--CceEEEEEcCCCEEEEeCCCC
Q 013457 313 GVGDNVDHCSPVQVKF---PLDQISCG--WRHTLAVTERQNVFSWGRGTN 357 (442)
Q Consensus 313 G~g~~~~~~~p~~v~~---~~~~i~~G--~~h~~alt~~g~v~~wG~n~~ 357 (442)
. .+.. ....++.. ....+....||.|+.|=-...
T Consensus 328 ~-----------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 328 T-----------MLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp E-----------EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred e-----------eeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 1 1111 11123322 334455567889999965543
No 44
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=75.43 E-value=51 Score=30.45 Aligned_cols=106 Identities=11% Similarity=0.173 Sum_probs=56.6
Q ss_pred cEEEEEeC--CceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCC-eEEEEecCCcEEEEe
Q 013457 125 RVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE-HSVAVAEDGELYGWG 201 (442)
Q Consensus 125 ~i~~Ia~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~-h~~~Lt~~G~vy~wG 201 (442)
.|..++.. ....+.-..+|.|+.|-..... ....+.. ....|..++...+ ..+....+|.|+.|-
T Consensus 249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~l~~~~~d~~i~i~d 316 (425)
T 1r5m_A 249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-----------SQNCFYG-HSQSIVSASWVGDDKVISCSMDGSVRLWS 316 (425)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEECSSSBS-----------CSEEECC-CSSCEEEEEEETTTEEEEEETTSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-----------cceEecC-CCccEEEEEECCCCEEEEEeCCCcEEEEE
Confidence 56666543 4456666678999999643210 0111111 1234666654333 566667899999996
Q ss_pred CCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEec--CceEEEEeCCCCEEEEeC
Q 013457 202 WGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACG--WRHTISVSSSGRLYSYGW 254 (442)
Q Consensus 202 ~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~~s~~lt~~G~vy~~G~ 254 (442)
.... .+..........|..++.. ....++-..+|.|+.|-.
T Consensus 317 ~~~~------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 317 LKQN------------TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp TTTT------------EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred CCCC------------cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 4221 1111111223456565544 334555567888888864
No 45
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=74.10 E-value=56 Score=31.14 Aligned_cols=109 Identities=8% Similarity=0.127 Sum_probs=63.7
Q ss_pred ccceeecCCCCCcEEEEEccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEE
Q 013457 60 LSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAV 139 (442)
Q Consensus 60 ~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~l 139 (442)
..|.....+.. |.+|++ ....+++.++ +.|..|=-....+. .....+ ...+.++.+-....+++
T Consensus 79 ~~~~~~~~lp~--V~~l~f-d~~~L~v~~~-~~l~v~dv~sl~~~-----------~~~~~~-~~~v~~i~~~~p~~av~ 142 (388)
T 1xip_A 79 LTFKWEKEIPD--VIFVCF-HGDQVLVSTR-NALYSLDLEELSEF-----------RTVTSF-EKPVFQLKNVNNTLVIL 142 (388)
T ss_dssp CCCSEEEECTT--EEEEEE-ETTEEEEEES-SEEEEEESSSTTCE-----------EEEEEC-SSCEEEEEECSSEEEEE
T ss_pred ccceEEeeCCC--eeEEEE-CCCEEEEEcC-CcEEEEEchhhhcc-----------Ccccee-ecceeeEEecCCCEEEE
Confidence 34533334553 999999 6667777766 99999964433221 111111 12456666655568888
Q ss_pred EcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEecCCcEEEE
Q 013457 140 TVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (442)
Q Consensus 140 t~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~w 200 (442)
+.||.|+.|--... ++ ..+. ..|..++-...-.++...||++..|
T Consensus 143 ~~dG~L~v~dl~~~-~~-----------~~~~----~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 143 NSVNDLSALDLRTK-ST-----------KQLA----QNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp ETTSEEEEEETTTC-CE-----------EEEE----ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred ECCCCEEEEEccCC-cc-----------cccc----CCceEEEEcCCceEEEEcCCcEEEE
Confidence 99999999964321 11 0111 1466666665555555666766666
No 46
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=72.58 E-value=54 Score=29.45 Aligned_cols=238 Identities=11% Similarity=0.092 Sum_probs=115.7
Q ss_pred CCCEEEEEecCCc-eEEEEe-----CCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCC----e-eEEE
Q 013457 18 FRPVLLISAGASH-SVALLS-----GNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD----H-TTAY 86 (442)
Q Consensus 18 ~~~i~~is~G~~~-~~~l~~-----~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~----~-~~~l 86 (442)
...|..|+.-... .+++.. ||.|++|-..... ..+.... -....|..++...+ . .+.-
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~----------~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD----------LKLLREI-EKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS----------EEEEEEE-EESSCEEEEECTTCCTTTCCEEEE
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc----------ccceeee-cccCcEEEEEEcCCCCCCceEEEe
Confidence 4466777665533 333333 7888888543211 1111111 11235777777654 3 3334
Q ss_pred EccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEE--------eCCceEEEEEcCCeEEEEeCCCCCCcCC
Q 013457 87 SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA--------CGDSHCLAVTVEGEVQSWGRNQNGQLGL 158 (442)
Q Consensus 87 ~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia--------~G~~h~~~lt~~G~vy~wG~n~~gqlG~ 158 (442)
..+ |.|..|-.....+ ....+. .....|..+. ....+.+.-..||.|..|-......
T Consensus 87 ~~d-g~i~iwd~~~~~~----------~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~--- 151 (357)
T 3i2n_A 87 DFG-GNLHIWNLEAPEM----------PVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD--- 151 (357)
T ss_dssp ETT-SCEEEECTTSCSS----------CSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS---
T ss_pred cCC-CeEEEEeCCCCCc----------cEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC---
Confidence 445 9999995443210 001111 1223566663 2234566667889999996543210
Q ss_pred CCCCCcccceeeeccc---CCcEEEEE------eCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCce
Q 013457 159 GTTEDSLVPQKLQAFE---GVSIKMVA------AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREK 229 (442)
Q Consensus 159 ~~~~~~~~p~~v~~~~---~~~i~~ia------~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~ 229 (442)
....+.... ...+..++ ......+.-..+|.|+.|-.... .+... ......
T Consensus 152 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~~~~-~~~~~~ 211 (357)
T 3i2n_A 152 -------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM------------ALRWE-TNIKNG 211 (357)
T ss_dssp -------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT------------EEEEE-EECSSC
T ss_pred -------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC------------ceeee-cCCCCc
Confidence 011111111 22465655 34445556667899999964321 01111 111235
Q ss_pred EEEEEec-----CceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCCc---eEEEeCCCcE
Q 013457 230 MVMVACG-----WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRH---TMAVTSDGKL 301 (442)
Q Consensus 230 i~~I~~G-----~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h---s~~lt~~G~v 301 (442)
|..++.. ....++-..+|.|+.|-...... .......... .....|..++..... .+.-..+|.|
T Consensus 212 v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i 284 (357)
T 3i2n_A 212 VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP------TKGFASVSEK-AHKSTVWQVRHLPQNRELFLTAGGAGGL 284 (357)
T ss_dssp EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET------TTEEEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc------ccceeeeccC-CCcCCEEEEEECCCCCcEEEEEeCCCcE
Confidence 6666554 34555567788888886422110 0000000111 122346666655443 3344578999
Q ss_pred EEeecCC
Q 013457 302 YGWGWNK 308 (442)
Q Consensus 302 y~wG~n~ 308 (442)
+.|-...
T Consensus 285 ~iwd~~~ 291 (357)
T 3i2n_A 285 HLWKYEY 291 (357)
T ss_dssp EEEEEEC
T ss_pred EEeecCC
Confidence 9997543
No 47
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=70.84 E-value=1e+02 Score=31.81 Aligned_cols=190 Identities=14% Similarity=0.080 Sum_probs=94.4
Q ss_pred CCEEEEEec--CCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCCe--eEEEEccCCeEE
Q 013457 19 RPVLLISAG--ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADH--TTAYSESCMQVY 94 (442)
Q Consensus 19 ~~i~~is~G--~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~--~~~l~~~~G~vy 94 (442)
..|..++-. ....++...||.|.+|-..... ....+..- ...|..++...+. .+....+ |.|.
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-----------~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-g~i~ 122 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-----------KVVDFEAH-PDYIRSIAVHPTKPYVLSGSDD-LTVK 122 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-----------EEEEEECC-SSCEEEEEECSSSSEEEEEETT-SEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----------EEEEEecC-CCCEEEEEEeCCCCEEEEEcCC-CEEE
Confidence 345444433 3444555578888888654321 11112211 1346666655443 3444455 9999
Q ss_pred EEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCC---ceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeee
Q 013457 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD---SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (442)
Q Consensus 95 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~---~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 171 (442)
.|-..... ............|..++... ...+..+.||.|+.|-..... ....+.
T Consensus 123 vw~~~~~~-----------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~ 180 (814)
T 3mkq_A 123 LWNWENNW-----------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLT 180 (814)
T ss_dssp EEEGGGTS-----------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEE
T ss_pred EEECCCCc-----------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEe
Confidence 99643211 11111111234677777643 455566778999999653211 011111
Q ss_pred cccCCcEEEEEe----CCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecC--ceEEEEeC
Q 013457 172 AFEGVSIKMVAA----GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGW--RHTISVSS 245 (442)
Q Consensus 172 ~~~~~~i~~ia~----G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~--~~s~~lt~ 245 (442)
......+..++. .....+.-..+|.|+.|-.... .....+. .....|..++... ...+....
T Consensus 181 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~ 248 (814)
T 3mkq_A 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-----------SCVATLE-GHMSNVSFAVFHPTLPIIISGSE 248 (814)
T ss_dssp CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-----------EEEEEEE-CCSSCEEEEEECSSSSEEEEEET
T ss_pred cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-----------cEEEEEc-CCCCCEEEEEEcCCCCEEEEEeC
Confidence 111123333433 3445566668899999953210 1111111 1223455555443 34555567
Q ss_pred CCCEEEEeCC
Q 013457 246 SGRLYSYGWS 255 (442)
Q Consensus 246 ~G~vy~~G~n 255 (442)
+|.|+.|-..
T Consensus 249 dg~v~vwd~~ 258 (814)
T 3mkq_A 249 DGTLKIWNSS 258 (814)
T ss_dssp TSCEEEEETT
T ss_pred CCeEEEEECC
Confidence 8999999643
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=67.33 E-value=77 Score=29.15 Aligned_cols=237 Identities=14% Similarity=0.077 Sum_probs=109.9
Q ss_pred CEEEEEecCC--ceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccC--CeeEEEEccCCeEEE
Q 013457 20 PVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQVYS 95 (442)
Q Consensus 20 ~i~~is~G~~--~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~--~~~~~l~~~~G~vy~ 95 (442)
.|..++.... ..+....||.|++|- ..++ ....+.. ....|..++... .+.+....+ |.|+.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~--~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-~~i~i 175 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN--KTGA----------LLNVLNF-HRAPIVSVKWNKDGTHIISMDVE-NVTIL 175 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE--TTSC----------EEEEECC-CCSCEEEEEECTTSSEEEEEETT-CCEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe--CCCC----------eeeeccC-CCccEEEEEECCCCCEEEEEecC-CeEEE
Confidence 6777776543 334445788999995 1111 1111211 123576766543 344445556 99999
Q ss_pred EecCCCCccCCCCCCCceeeEEec----ccCCCcEEEEEe-CCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceee
Q 013457 96 WGWGDFGRLGHGNSSDLFTPLPIK----ALHSLRVKQIAC-GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (442)
Q Consensus 96 wG~n~~gqlG~~~~~~~~~p~~v~----~~~~~~i~~Ia~-G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 170 (442)
|-......+..-..... ....+. ...+..+..++. .....++...+|.|+.|-...... ...+
T Consensus 176 wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~-----------~~~~ 243 (425)
T 1r5m_A 176 WNVISGTVMQHFELKET-GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP-----------TGKL 243 (425)
T ss_dssp EETTTTEEEEEECCC----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC-----------SEEE
T ss_pred EECCCCcEEEEeecccc-CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce-----------eeee
Confidence 96543211110000000 000000 000000222221 234566667788999987543210 1111
Q ss_pred ecccCCcEEEEEe--CCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCc-eEEEEeCCC
Q 013457 171 QAFEGVSIKMVAA--GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWR-HTISVSSSG 247 (442)
Q Consensus 171 ~~~~~~~i~~ia~--G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~-~s~~lt~~G 247 (442)
. .....|..++. .....+....+|.|+.|-..... ....+ ......|..+..... ..++...+|
T Consensus 244 ~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~-~~~~~~i~~~~~~~~~~l~~~~~d~ 310 (425)
T 1r5m_A 244 I-GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-----------SQNCF-YGHSQSIVSASWVGDDKVISCSMDG 310 (425)
T ss_dssp C-CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS-----------CSEEE-CCCSSCEEEEEEETTTEEEEEETTS
T ss_pred c-cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-----------cceEe-cCCCccEEEEEECCCCEEEEEeCCC
Confidence 1 11224555544 34455566678999999532210 00111 112234555544333 555567788
Q ss_pred CEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcC--CCceEEEeCCCcEEEeecC
Q 013457 248 RLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWN 307 (442)
Q Consensus 248 ~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~hs~~lt~~G~vy~wG~n 307 (442)
.|+.|=.... .+..........|..++.. ....++-..+|.|+.|-..
T Consensus 311 ~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 311 SVRLWSLKQN------------TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp EEEEEETTTT------------EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred cEEEEECCCC------------cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 8888864221 1111111122346666554 3344445678899998654
No 49
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=67.18 E-value=35 Score=32.60 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=43.8
Q ss_pred EEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEecCCcEEEEeC
Q 013457 126 VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGW 202 (442)
Q Consensus 126 i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~ 202 (442)
|.+|++ +...+++.++|.|..|-..+..+. ..+..++ ..+.++.+-....++++.+|.|+.|-.
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~-----------~~~~~~~-~~v~~i~~~~p~~av~~~dG~L~v~dl 153 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEF-----------RTVTSFE-KPVFQLKNVNNTLVILNSVNDLSALDL 153 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCE-----------EEEEECS-SCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhcc-----------Cccceee-cceeeEEecCCCEEEEECCCCEEEEEc
Confidence 999999 777888889999999975443211 1111111 245566666656888899999999953
No 50
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=67.16 E-value=79 Score=29.18 Aligned_cols=225 Identities=8% Similarity=-0.007 Sum_probs=111.7
Q ss_pred EEccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC-----CceEEEEEcCCeEEEEeC
Q 013457 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGR 150 (442)
Q Consensus 76 i~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G-----~~h~~~lt~~G~vy~wG~ 150 (442)
++...++.+++++. |++|..-..+.-..+.... -......+....+.+|+.+..- ..+.+++|++|.+.-.-.
T Consensus 46 ~~~t~d~ll~fT~~-Gr~~~~~~~elp~~~r~a~-G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l 123 (323)
T 1wp5_A 46 EMNTKDVLLLFTNK-GNYLYCPVHELPDIRWKDL-GQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTEL 123 (323)
T ss_dssp EEETTSEEEEEETT-SEEEEEEGGGSCBCCTTSC-CEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECC-CEEEEEEHHHCcCCCCCCC-CcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEH
Confidence 45567778888888 9999987654333322110 0101111222356677776443 335888999999887764
Q ss_pred CCCCCcCCCCCCCcccceeeecccCCcEEE--EEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCc
Q 013457 151 NQNGQLGLGTTEDSLVPQKLQAFEGVSIKM--VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDRE 228 (442)
Q Consensus 151 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~ 228 (442)
..+-..... .- ...+..-++..++. +..+.++.+++|++|+++-+-.+..-.+|....... .+...++.
T Consensus 124 ~e~~~~~r~---~G--~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~----~i~L~~~d 194 (323)
T 1wp5_A 124 KHYKAQRYS---KP--LTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVK----GMNLKEGD 194 (323)
T ss_dssp GGGCCSCCS---SC--EECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEE----CCCCCTTC
T ss_pred HHhhhcccc---Cc--eEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEE----EEEeCCCC
Confidence 433211100 00 00011112233433 334678899999999999887665433333111110 11112334
Q ss_pred eEEEEEe--cCc-eEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEE--EEcCCCceEEEeCCCcEEE
Q 013457 229 KMVMVAC--GWR-HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ--ISGGWRHTMAVTSDGKLYG 303 (442)
Q Consensus 229 ~i~~I~~--G~~-~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--I~~G~~hs~~lt~~G~vy~ 303 (442)
.|+.+.. ... ..+.++++|.....-..++-..+.+.. -...+...+. .+..+.. +..+....++++++|++.-
T Consensus 195 ~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k-Gv~~~~~~~~-~~~~l~~~~~v~~~~~i~~it~~g~~ir 272 (323)
T 1wp5_A 195 YIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR-GVVILRELKA-NPHRISGFVVAQDSDTIYLQTEKSFIET 272 (323)
T ss_dssp CEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC-CEECSCCCSS-SCCCEEEEEEECTTCEEEEEETTSCEEE
T ss_pred EEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC-CEECeeecCC-CCceEEEEEEeCCCCeEEEEeCCCeEEE
Confidence 5555532 122 567777777655444333322222110 0111111111 1112332 2345677888999998877
Q ss_pred eecCCCcccc
Q 013457 304 WGWNKFGQVG 313 (442)
Q Consensus 304 wG~n~~GqLG 313 (442)
.-.++.-..|
T Consensus 273 ~~~~~i~~~~ 282 (323)
T 1wp5_A 273 IKVGDIRFSD 282 (323)
T ss_dssp EEGGGSCBCC
T ss_pred EEhhhcCccC
Confidence 6555444433
No 51
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=66.16 E-value=84 Score=29.15 Aligned_cols=154 Identities=14% Similarity=0.131 Sum_probs=78.6
Q ss_pred EEecCCceEEE---EeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEcc---CCeeEEEEccCCeEEEEe
Q 013457 24 ISAGASHSVAL---LSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG---ADHTTAYSESCMQVYSWG 97 (442)
Q Consensus 24 is~G~~~~~~l---~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G---~~~~~~l~~~~G~vy~wG 97 (442)
+++......++ ..+|.|++|=.+..+.+.. ..+. +.. -...|..++.. ....+.-..| |.|..|-
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~------~~~~-~~~-h~~~V~~~~~~p~~~~~l~s~s~d-g~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDK------NVPL-VCG-HTAPVLDIAWCPHNDNVIASGSED-CTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCT------TCCC-BCC-CSSCEEEEEECTTCTTEEEEEETT-SEEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCC------CCce-Eec-CCCCEEEEEeCCCCCCEEEEEeCC-CeEEEEE
Confidence 44555555554 3578999997655443311 0011 111 11357777764 3344444556 9999997
Q ss_pred cCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCc---eEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeee-cc
Q 013457 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS---HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ-AF 173 (442)
Q Consensus 98 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~---h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~-~~ 173 (442)
........ ....+..........|..|+.... ..+.-..||.|+.|-..... ....+. ..
T Consensus 111 ~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~ 174 (402)
T 2aq5_A 111 IPDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-----------AVLTLGPDV 174 (402)
T ss_dssp CCTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-----------EEEEECTTT
T ss_pred ccCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-----------ccEEEecCC
Confidence 54432111 011111111112346777776543 45555788999999653310 011110 11
Q ss_pred cCCcEEEEEeC--CCeEEEEecCCcEEEEeC
Q 013457 174 EGVSIKMVAAG--AEHSVAVAEDGELYGWGW 202 (442)
Q Consensus 174 ~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~ 202 (442)
....|..++.. ....+.-..||.|+.|-.
T Consensus 175 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp CCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred CCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 23356666654 334555567899999954
No 52
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=65.83 E-value=1.6e+02 Score=32.25 Aligned_cols=108 Identities=13% Similarity=0.126 Sum_probs=52.8
Q ss_pred cEEEEEccCCeeEE-EEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC--CceEEEEEcCCeEEEE
Q 013457 72 EIVSVTCGADHTTA-YSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSW 148 (442)
Q Consensus 72 ~i~~i~~G~~~~~~-l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt~~G~vy~w 148 (442)
.|..++...+..++ ...+ |.|+.|-...... ...+.. ....|..++.. ....+.-..||.|+.|
T Consensus 1046 ~v~~~~~~~~~~l~~~~~d-g~v~vwd~~~~~~-----------~~~~~~-~~~~v~~~~~s~d~~~l~s~s~d~~v~iw 1112 (1249)
T 3sfz_A 1046 TVKDFRLLQDSRLLSWSFD-GTVKVWNVITGRI-----------ERDFTC-HQGTVLSCAISSDATKFSSTSADKTAKIW 1112 (1249)
T ss_dssp CEEEEEECSSSEEEEEESS-SEEEEEETTTTCC-----------CEEEEC-CSSCCCCEEECSSSSSCEEECCSSCCCEE
T ss_pred cEEEEEEcCCCcEEEEECC-CcEEEEECCCCce-----------eEEEcc-cCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 46666655444444 4445 9999996532211 011111 11234444333 3345556677888888
Q ss_pred eCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCC--eEEEEecCCcEEEEeCCC
Q 013457 149 GRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGR 204 (442)
Q Consensus 149 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~--h~~~Lt~~G~vy~wG~n~ 204 (442)
-......+. .+.. ....|..++...+ ..+.-..||.|+.|-...
T Consensus 1113 d~~~~~~~~-----------~l~~-h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A 1113 SFDLLSPLH-----------ELKG-HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp CSSSSSCSB-----------CCCC-CSSCEEEEEECSSSSEEEEEETTSCCCEEESSS
T ss_pred ECCCcceee-----------eecc-CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 543221110 0111 1224666655433 344455789999996543
No 53
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=65.79 E-value=76 Score=28.49 Aligned_cols=200 Identities=12% Similarity=0.081 Sum_probs=93.6
Q ss_pred CcEEEEEccCCe--eEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC--CceEEEEEcCCeEE
Q 013457 71 HEIVSVTCGADH--TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQ 146 (442)
Q Consensus 71 ~~i~~i~~G~~~--~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt~~G~vy 146 (442)
..|..++...+. .+.-..+ |.|+.|-..... ....+.. ....|..++.. ..+.+....||.|+
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~-----------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKD-SSASVWYSLNGE-----------RLGTLDG-HTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESS-SCEEEEETTTCC-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred ceEEEEEEcCCCCEEEEEeCC-CEEEEEeCCCch-----------hhhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 357777765443 3333455 899999543211 1111211 23367777664 44566677899999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCC--CeEEEEecC-----CcEEEEeCCCCCCcCCCCCCCeeee
Q 013457 147 SWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA--EHSVAVAED-----GELYGWGWGRYGNLGLGDRNDRLIP 219 (442)
Q Consensus 147 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~--~h~~~Lt~~-----G~vy~wG~n~~GqlG~~~~~~~~~p 219 (442)
.|-...... ...+. ....|..++... ...++...+ |.|+.|-.........-........
T Consensus 100 iwd~~~~~~-----------~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 100 LWDVSNGQC-----------VATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp EEETTTCCE-----------EEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred EEECCCCcE-----------EEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 996533110 11111 222455554433 344444555 8888886433221110000000000
Q ss_pred eEeeeeC-CceEEEEEe--cCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCC--ceEE
Q 013457 220 EKVATVD-REKMVMVAC--GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR--HTMA 294 (442)
Q Consensus 220 ~~v~~~~-~~~i~~I~~--G~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~--hs~~ 294 (442)
..+.... ...+..++. .....++...+|.|+.|-....+ .+..........|..++.... ..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-----------EYVDSIDLHEKSISDMQFSPDLTYFIT 235 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT-----------EEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-----------EeEEEEecCCCceeEEEECCCCCEEEE
Confidence 0111111 013444433 23345556778888888643211 111111112234666665433 3344
Q ss_pred EeCCCcEEEeecC
Q 013457 295 VTSDGKLYGWGWN 307 (442)
Q Consensus 295 lt~~G~vy~wG~n 307 (442)
...+|.|+.|-..
T Consensus 236 ~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 236 SSRDTNSFLVDVS 248 (369)
T ss_dssp EETTSEEEEEETT
T ss_pred ecCCceEEEEECC
Confidence 4578889988643
No 54
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=65.65 E-value=83 Score=28.90 Aligned_cols=190 Identities=13% Similarity=0.102 Sum_probs=88.6
Q ss_pred cEEEEEccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCC--ceEEEEEcCCeEEEEe
Q 013457 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWG 149 (442)
Q Consensus 72 ~i~~i~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~--~h~~~lt~~G~vy~wG 149 (442)
.|..++...+..++....+|.|..|=......+ ........-....|..|+... .+.+.-..||.|..|-
T Consensus 96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~--------~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd 167 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASDSGAVELWEILEKESL--------LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167 (357)
T ss_dssp CEEEEEEETTTEEEEEETTSCEEEC----------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred CEEEEEEcCCCCEEEEECCCEEEEeecccccee--------EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 467776554444444444488888832211100 000000011123577776543 3445556889999995
Q ss_pred CCCCCCcCCCCCCCcccceeeeccc--CCcEEEEEeCC---CeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEee-
Q 013457 150 RNQNGQLGLGTTEDSLVPQKLQAFE--GVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA- 223 (442)
Q Consensus 150 ~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~ia~G~---~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~- 223 (442)
.+.. ..+..+. ...|..|+... ...+....||.|..|-......+. .+.
T Consensus 168 ~~~~--------------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~-----------~~~~ 222 (357)
T 4g56_B 168 LSQK--------------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT-----------RIDF 222 (357)
T ss_dssp TTTT--------------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC-----------BCCC
T ss_pred CCCC--------------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee-----------eeee
Confidence 4321 1122221 23577776532 344556688999998432211100 000
Q ss_pred eeCCceEEEEEecC--ceEE-EEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCC---CceEEEeC
Q 013457 224 TVDREKMVMVACGW--RHTI-SVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW---RHTMAVTS 297 (442)
Q Consensus 224 ~~~~~~i~~I~~G~--~~s~-~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~---~hs~~lt~ 297 (442)
......+..++... .+.+ .-..++.|+.|-.... .....+.. ....|..|+... ...+.-.+
T Consensus 223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-----------~~~~~~~~-~~~~v~~l~~sp~~~~~lasgs~ 290 (357)
T 4g56_B 223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-----------DSAQTSAV-HSQNITGLAYSYHSSPFLASISE 290 (357)
T ss_dssp TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-----------GGCEEECC-CSSCEEEEEECSSSSCCEEEEET
T ss_pred ccccccccchhhhhcccceEEEeecccceeEEECCCC-----------cEeEEEec-cceeEEEEEEcCCCCCEEEEEeC
Confidence 01112345555431 2233 3467888888853211 11111221 223477776532 23333467
Q ss_pred CCcEEEeec
Q 013457 298 DGKLYGWGW 306 (442)
Q Consensus 298 ~G~vy~wG~ 306 (442)
||.|+.|-.
T Consensus 291 D~~i~iwd~ 299 (357)
T 4g56_B 291 DCTVAVLDA 299 (357)
T ss_dssp TSCEEEECT
T ss_pred CCEEEEEEC
Confidence 899999954
No 55
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=65.48 E-value=83 Score=28.81 Aligned_cols=216 Identities=11% Similarity=0.023 Sum_probs=110.0
Q ss_pred EEccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC-----CceEEEEEcCCeEEEEeC
Q 013457 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGR 150 (442)
Q Consensus 76 i~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G-----~~h~~~lt~~G~vy~wG~ 150 (442)
++...++.+++++. |.+|..-..+.-..+....- ......+....+.+|+.+... ..+.+++|++|.++-.-.
T Consensus 54 ~~~~~~~ll~~T~~-G~~~~~~~~~ip~~~r~~~G-~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l 131 (312)
T 1suu_A 54 CVNTHDYLFMISNE-GKLYLINAYEIKDSSRASKG-QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFES 131 (312)
T ss_dssp EEETTCEEEEEETT-SEEEEEEGGGSCC--------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECC-CeEEEEEHHHCCCCCccCCC-cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEH
Confidence 44566778888888 99999865433222211100 001112233356677777553 456899999999998875
Q ss_pred CCCCCc-CCCCCCCcccceeeecccCCcEEEEE--eCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCC
Q 013457 151 NQNGQL-GLGTTEDSLVPQKLQAFEGVSIKMVA--AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDR 227 (442)
Q Consensus 151 n~~gql-G~~~~~~~~~p~~v~~~~~~~i~~ia--~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~ 227 (442)
..+-.. +.+ . ..+..-++..++.+. .+..+.+++|++|.++-+-..+.-..|...... ..+...++
T Consensus 132 ~~~~~~r~~G-----~--~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv----~~i~L~~~ 200 (312)
T 1suu_A 132 TDFKAVKSRG-----V--IVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGV----CGMKLKEG 200 (312)
T ss_dssp GGGCC----C-----E--ECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCE----ECCCCCTT
T ss_pred HHhhccCCCc-----E--EEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCe----EeEEeCCC
Confidence 443111 011 0 001111233454433 456789999999999988765543333221111 11111234
Q ss_pred ceEEEEEe--cCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEE--EEcCCCceEEEeCCCcEEE
Q 013457 228 EKMVMVAC--GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ--ISGGWRHTMAVTSDGKLYG 303 (442)
Q Consensus 228 ~~i~~I~~--G~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--I~~G~~hs~~lt~~G~vy~ 303 (442)
..|+.+.. ...+.++++++|.+...--.++-..+.+..... .. ++..-....+.. ........++++++|.+.-
T Consensus 201 d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv~-~~-~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r 278 (312)
T 1suu_A 201 DLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYT-SY-KKSDKKAGSVVDAIAVSEDDEILLVSKRSKALR 278 (312)
T ss_dssp CCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEE-CS-CTTCTTTCSEEEEEEECTTCEEEEEETTCEEEE
T ss_pred CEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCEE-ee-EccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 45555433 345678889999888777666655444321110 00 000001112322 2224555667777776655
Q ss_pred eec
Q 013457 304 WGW 306 (442)
Q Consensus 304 wG~ 306 (442)
.-.
T Consensus 279 ~~~ 281 (312)
T 1suu_A 279 TVA 281 (312)
T ss_dssp EEG
T ss_pred EEc
Confidence 433
No 56
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=64.83 E-value=86 Score=28.78 Aligned_cols=190 Identities=11% Similarity=0.077 Sum_probs=92.3
Q ss_pred cEEEEEccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC--CceEEEEEcCCeEEEEe
Q 013457 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWG 149 (442)
Q Consensus 72 ~i~~i~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt~~G~vy~wG 149 (442)
.|.+++...+..++...++|.|..|=...... .........-....|..|+.. ..+.+.-..||.|..|-
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~--------~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENET--------LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTSS--------CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCCc--------eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 47777765555455444449999995432211 111111111123357777654 34455556789999996
Q ss_pred CCCCCCcCCCCCCCcccceeeeccc--CCcEEEEEeCCC---eEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEee-
Q 013457 150 RNQNGQLGLGTTEDSLVPQKLQAFE--GVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA- 223 (442)
Q Consensus 150 ~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~ia~G~~---h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~- 223 (442)
.... ..+..+. ...|..++.... ..+.-..||.|..|-... ++. ...+.
T Consensus 156 ~~~~--------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~~----------~~~~~~ 210 (344)
T 4gqb_B 156 LAQQ--------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKP----------ASQIGC 210 (344)
T ss_dssp TTTT--------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS-SSC----------EEECC-
T ss_pred CCCC--------------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc-cce----------eeeeec
Confidence 4321 1122222 235777766433 233445789999994321 110 00110
Q ss_pred eeCCceEEEEEec--CceE-EEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCC---CceEEEeC
Q 013457 224 TVDREKMVMVACG--WRHT-ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW---RHTMAVTS 297 (442)
Q Consensus 224 ~~~~~~i~~I~~G--~~~s-~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~---~hs~~lt~ 297 (442)
......+..++.. ..+. +.-..+|.|..|=... ++ ....+.. ....|..|+... .+.+.-..
T Consensus 211 ~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-~~----------~~~~~~~-h~~~v~~v~fsp~g~~~lasgs~ 278 (344)
T 4gqb_B 211 SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-TS----------CVLSSAV-HSQCVTGLVFSPHSVPFLASLSE 278 (344)
T ss_dssp ---CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-------------CCEEEEC-CSSCEEEEEECSSSSCCEEEEET
T ss_pred ceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-Cc----------EEEEEcC-CCCCEEEEEEccCCCeEEEEEeC
Confidence 1112234444432 2223 3346788888884321 11 0111111 123377777543 23333568
Q ss_pred CCcEEEeec
Q 013457 298 DGKLYGWGW 306 (442)
Q Consensus 298 ~G~vy~wG~ 306 (442)
||.|+.|-.
T Consensus 279 D~~i~vwd~ 287 (344)
T 4gqb_B 279 DCSLAVLDS 287 (344)
T ss_dssp TSCEEEECT
T ss_pred CCeEEEEEC
Confidence 999999953
No 57
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=64.41 E-value=82 Score=28.42 Aligned_cols=242 Identities=13% Similarity=0.055 Sum_probs=120.8
Q ss_pred CCCEEEEEecCCceEEE--EeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEcc----CCeeEEEEccCC
Q 013457 18 FRPVLLISAGASHSVAL--LSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG----ADHTTAYSESCM 91 (442)
Q Consensus 18 ~~~i~~is~G~~~~~~l--~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G----~~~~~~l~~~~G 91 (442)
...|..++.......++ ..||.|.+|=.... .......+.. ....|..++.. ..+.+....+ |
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~---------~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d-g 79 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE---------THKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYD-G 79 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETT---------EEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETT-S
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCC---------cceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccC-C
Confidence 34566766554333333 36888888854210 0011111111 12457777764 4455555666 9
Q ss_pred eEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCC----ceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccc
Q 013457 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD----SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVP 167 (442)
Q Consensus 92 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~----~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p 167 (442)
.|..|-.... ...+..........|..++... ...+....||.|..|-...... ..+
T Consensus 80 ~v~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~~~ 140 (379)
T 3jrp_A 80 KVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSP 140 (379)
T ss_dssp CEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------CCE
T ss_pred EEEEEEcCCC----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------eee
Confidence 9999954321 1111112222334677777653 3566778899999997543211 011
Q ss_pred eeeecccCCcEEEEEeC---------------CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEE
Q 013457 168 QKLQAFEGVSIKMVAAG---------------AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVM 232 (442)
Q Consensus 168 ~~v~~~~~~~i~~ia~G---------------~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ 232 (442)
..+. .....|..++.. ....+.-..+|.|+.|-.... .....+..........|..
T Consensus 141 ~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~h~~~v~~ 211 (379)
T 3jrp_A 141 IIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD--------AQTYVLESTLEGHSDWVRD 211 (379)
T ss_dssp EEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT--------TTEEEEEEEECCCSSCEEE
T ss_pred EEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC--------CcceeeEEEEecccCcEeE
Confidence 1111 112346666554 345666678999999953211 1111111111112345666
Q ss_pred EEecC-----ceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEeccc--CCCcEEEEEcCC--CceEEEeCCCcEEE
Q 013457 233 VACGW-----RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL--RESFISQISGGW--RHTMAVTSDGKLYG 303 (442)
Q Consensus 233 I~~G~-----~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~I~~G~--~hs~~lt~~G~vy~ 303 (442)
++... ...+....+|.|..|-...... .....+... ....|..++... .+.++...+|.|+.
T Consensus 212 ~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i 282 (379)
T 3jrp_A 212 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG---------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 282 (379)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTTS---------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEE
T ss_pred EEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc---------cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEE
Confidence 66543 3455567789999986432110 001111111 122366555433 33444567899999
Q ss_pred eecC
Q 013457 304 WGWN 307 (442)
Q Consensus 304 wG~n 307 (442)
|=.+
T Consensus 283 w~~~ 286 (379)
T 3jrp_A 283 WKEN 286 (379)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 8654
No 58
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=63.63 E-value=97 Score=28.99 Aligned_cols=117 Identities=10% Similarity=-0.002 Sum_probs=57.5
Q ss_pred CCCEEEEEecC--CceEEEEeCCeEEEEeCC--CCCccCCCCCCCcccceeecCC------CCCcEEEEEcc----CCee
Q 013457 18 FRPVLLISAGA--SHSVALLSGNIVCSWGRG--EDGQLGHGDAEDRLSPTQLSAL------DGHEIVSVTCG----ADHT 83 (442)
Q Consensus 18 ~~~i~~is~G~--~~~~~l~~~g~v~~wG~n--~~gqLG~g~~~~~~~P~~v~~~------~~~~i~~i~~G----~~~~ 83 (442)
...|..|+.-. ...+.-..||.|.+|--. ..+++ ........+..+ ....+..+..- ....
T Consensus 111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESE-----VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTE-----EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCce-----eeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 45677777654 334444578999998532 11111 000000011100 12334444421 3444
Q ss_pred EEEEccCCeEEEEecCCCCccCCCCCCCceeeEEeccc-CCCcEEEEEeC--CceEEEEEcCCeEEEEeCC
Q 013457 84 TAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL-HSLRVKQIACG--DSHCLAVTVEGEVQSWGRN 151 (442)
Q Consensus 84 ~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~-~~~~i~~Ia~G--~~h~~~lt~~G~vy~wG~n 151 (442)
+.-..+ |.|+.|-..... ....+... ....|..++.. ....+.-+.||.|..|-..
T Consensus 186 ~~~~~d-~~i~iwd~~~~~-----------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 186 VALTNL-SRVIIFDIRTLE-----------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp EEEETT-SEEEEEETTTCC-----------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred EEEeCC-CeEEEEeCCCCe-----------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 555556 999999643211 11111111 22367777764 3445556788999999653
No 59
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=62.15 E-value=1.2e+02 Score=29.64 Aligned_cols=187 Identities=13% Similarity=0.054 Sum_probs=96.5
Q ss_pred CCEEEEEecCC---ceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCC---cEEEEEccCC---eeEEEEcc
Q 013457 19 RPVLLISAGAS---HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGH---EIVSVTCGAD---HTTAYSES 89 (442)
Q Consensus 19 ~~i~~is~G~~---~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~---~i~~i~~G~~---~~~~l~~~ 89 (442)
..|..++.... ..+....|+.|.+|=.... .....+..- .. .|..++...+ +.+....+
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-----------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-----------KFSASDRTH-HKQGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-----------EEEEEECSS-SCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-----------ceeeeeccc-CCCCceEEEEEECCCCCCEEEEEeCC
Confidence 44555554433 3444457888888853211 111111111 12 5777776644 44445566
Q ss_pred CCeEEEEecCCCCccCCCCCCCceeeEEecc---cCCCcEEEEEe-CCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcc
Q 013457 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKA---LHSLRVKQIAC-GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSL 165 (442)
Q Consensus 90 ~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~---~~~~~i~~Ia~-G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 165 (442)
|.|+.|-..... ....+.. .....|..++. ...+.+....||.|..|-......+
T Consensus 229 -g~i~vwd~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--------- 287 (615)
T 1pgu_A 229 -RKISCFDGKSGE-----------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV--------- 287 (615)
T ss_dssp -CCEEEEETTTCC-----------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE---------
T ss_pred -CeEEEEECCCCC-----------EeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEE---------
Confidence 999999643211 1111101 22346777665 4455666677899999965431100
Q ss_pred cceeeecc---cCCcEEEEEe-CCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceEE
Q 013457 166 VPQKLQAF---EGVSIKMVAA-GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTI 241 (442)
Q Consensus 166 ~p~~v~~~---~~~~i~~ia~-G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~ 241 (442)
..+... ....+..+.. .....++...+|.|+.|-... ..+..........|..++. .. .+
T Consensus 288 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~------------~~~~~~~~~~~~~v~~~~~-~~-l~ 351 (615)
T 1pgu_A 288 --QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH------------DEVLKTISGHNKGITALTV-NP-LI 351 (615)
T ss_dssp --EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE------------EEEEEEECCCSSCEEEEET-TT-TE
T ss_pred --EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC------------CcEEEEEeCCCCCEEEEEe-cC-cE
Confidence 001100 0112333322 556677778899999995321 1111111122356777777 55 55
Q ss_pred EEeCCCCEEEEeC
Q 013457 242 SVSSSGRLYSYGW 254 (442)
Q Consensus 242 ~lt~~G~vy~~G~ 254 (442)
.-..+|.|..|-.
T Consensus 352 ~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 352 SGSYDGRIMEWSS 364 (615)
T ss_dssp EEETTSCEEETTT
T ss_pred EECCCCeEEEEEc
Confidence 5678888888854
No 60
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=61.65 E-value=90 Score=27.96 Aligned_cols=153 Identities=10% Similarity=0.017 Sum_probs=81.8
Q ss_pred CcEEEEEcc------CCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecc-cCCCcEEEEEeCCc------eEE
Q 013457 71 HEIVSVTCG------ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKA-LHSLRVKQIACGDS------HCL 137 (442)
Q Consensus 71 ~~i~~i~~G------~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~Ia~G~~------h~~ 137 (442)
..|..|+.. ....++...+ +.|..|-......+ ........ .....|..++.... ..+
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~-~~v~vw~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGS-NRVTLYECHSQGEI--------RLLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEET-TEEEEEEECGGGCE--------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CceEEEEEecccCCCCceEEEECCC-CEEEEEEcCCCcEE--------EeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 467777765 3445555556 89999965432111 11111111 12345766665433 556
Q ss_pred EEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeC---CCeEEEEecCCcEEEEeCCCCCCcCCCCCC
Q 013457 138 AVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG---AEHSVAVAEDGELYGWGWGRYGNLGLGDRN 214 (442)
Q Consensus 138 ~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G---~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~ 214 (442)
.-..||.|..|-..... ....+.. ....|..++.. ....+.-..||.|+.|-....
T Consensus 90 ~~~~dg~i~v~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------- 148 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQ-----------CIKHYVG-HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD--------- 148 (366)
T ss_dssp EEETTCEEEEECTTTCC-----------EEEEEES-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT---------
T ss_pred EecCCCEEEEEEchhce-----------EeeeecC-CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC---------
Confidence 66788999999643210 0111111 23367777764 345566678999999964321
Q ss_pred CeeeeeEee--eeCCceEEEEEec--CceEEEEeCCCCEEEEeCC
Q 013457 215 DRLIPEKVA--TVDREKMVMVACG--WRHTISVSSSGRLYSYGWS 255 (442)
Q Consensus 215 ~~~~p~~v~--~~~~~~i~~I~~G--~~~s~~lt~~G~vy~~G~n 255 (442)
.....+. ......|..++.. ..+.+....+|.|+.|-..
T Consensus 149 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 149 --TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp --EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred --eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 0111110 1123456666654 3355556688999999653
No 61
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=61.32 E-value=99 Score=28.28 Aligned_cols=226 Identities=12% Similarity=0.022 Sum_probs=116.5
Q ss_pred CCCCEEEE--EecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEcc-----CCeeEEEEcc
Q 013457 17 PFRPVLLI--SAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG-----ADHTTAYSES 89 (442)
Q Consensus 17 ~~~~i~~i--s~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G-----~~~~~~l~~~ 89 (442)
..+.++.+ +.+..+.+++++.|.+|.+=-.+--..+... .-......+..-++..|+.+... ..+.++++++
T Consensus 45 e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~-~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~ 123 (312)
T 1suu_A 45 DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS-KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTAS 123 (312)
T ss_dssp TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETT
T ss_pred CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC-CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCC
Confidence 44555554 4456778999999999987543211111100 00011112333345667776654 3457778888
Q ss_pred CCeEEEEecCCCCccCCCCCCCceeeEE-ecccCCCcEEEEE--eCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCccc
Q 013457 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLP-IKALHSLRVKQIA--CGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLV 166 (442)
Q Consensus 90 ~G~vy~wG~n~~gqlG~~~~~~~~~p~~-v~~~~~~~i~~Ia--~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~ 166 (442)
|.++-.-..++-... ..-.. +....+..++.+. .+..+.+++|++|.++-+-.++.-..|......
T Consensus 124 -G~~kr~~l~~~~~~r-------~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv--- 192 (312)
T 1suu_A 124 -GKIARFESTDFKAVK-------SRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGV--- 192 (312)
T ss_dssp -SEEEEEEGGGGCC-----------CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCE---
T ss_pred -CeEEEEEHHHhhccC-------CCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCe---
Confidence 999988755442110 01111 1222344566554 356789999999999998866543444322111
Q ss_pred ceeeecccCCcEEEEEe--CCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEE--EecCceEEE
Q 013457 167 PQKLQAFEGVSIKMVAA--GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMV--ACGWRHTIS 242 (442)
Q Consensus 167 p~~v~~~~~~~i~~ia~--G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I--~~G~~~s~~ 242 (442)
..+..-++..|+.+.. ...+.++++++|.+...-...+-..+.+....... ++.......++.+ .......++
T Consensus 193 -~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv~~~--~~~k~~~~~lv~~~~~~~~~~l~~ 269 (312)
T 1suu_A 193 -CGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSY--KKSDKKAGSVVDAIAVSEDDEILL 269 (312)
T ss_dssp -ECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEECS--CTTCTTTCSEEEEEEECTTCEEEE
T ss_pred -EeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCEEee--EccCCCCCeEEEEEEeCCCCEEEE
Confidence 1111113445665543 45678889999988877766654433322211110 0000011223321 224556677
Q ss_pred EeCCCCEEEEeCCCC
Q 013457 243 VSSSGRLYSYGWSKY 257 (442)
Q Consensus 243 lt~~G~vy~~G~n~~ 257 (442)
++++|.+...--+..
T Consensus 270 ~t~~g~~~r~~~~~i 284 (312)
T 1suu_A 270 VSKRSKALRTVAGKV 284 (312)
T ss_dssp EETTCEEEEEEGGGS
T ss_pred EeCCCeEEEEEcccC
Confidence 788887766554443
No 62
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=60.86 E-value=1e+02 Score=28.43 Aligned_cols=141 Identities=9% Similarity=0.056 Sum_probs=73.5
Q ss_pred EEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEE---EccCCeeEEEEccCCeEEEEecC
Q 013457 23 LISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV---TCGADHTTAYSESCMQVYSWGWG 99 (442)
Q Consensus 23 ~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i---~~G~~~~~~l~~~~G~vy~wG~n 99 (442)
.++....+.+.-..||.|+.|-....... ..+....+..+ .....+.+.-..+ |.|..|-..
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~ 127 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDGS--------------KMLKRADYTAVDTAKLQMRRFILGTTE-GDIKVLDSN 127 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEETT--------------TTSCSCCEEEEEEECSSSCEEEEEETT-SCEEEECTT
T ss_pred eeeecCCeEEEEEcCCcEEEEEeccccee--------------eEEecCCceEEEEEecCCCEEEEEECC-CCEEEEeCC
Confidence 44555566677778999999964332111 11111122222 2233344444556 899999432
Q ss_pred CCCccCCCCCCCceeeEEecccCCCcEEEEEeC--CceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCc
Q 013457 100 DFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVS 177 (442)
Q Consensus 100 ~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~ 177 (442)
.. .+..........|..++.. ..+.+.-..||.|+.|-..... ....+.. ....
T Consensus 128 ~~------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-----------~~~~~~~-h~~~ 183 (420)
T 3vl1_A 128 FN------------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-----------NPRTLIG-HRAT 183 (420)
T ss_dssp SC------------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------CCEEEEC-CSSC
T ss_pred Cc------------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----------CceEEcC-CCCc
Confidence 11 1222211233467777764 3455666788999999754321 1111221 1224
Q ss_pred EEEEEeC--CCeEEEEecCCcEEEEeC
Q 013457 178 IKMVAAG--AEHSVAVAEDGELYGWGW 202 (442)
Q Consensus 178 i~~ia~G--~~h~~~Lt~~G~vy~wG~ 202 (442)
|..++.. ....+.-..||.|..|-.
T Consensus 184 v~~~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 184 VTDIAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred EEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence 5555543 344555667899999964
No 63
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=60.51 E-value=92 Score=27.70 Aligned_cols=253 Identities=11% Similarity=0.002 Sum_probs=124.6
Q ss_pred CCCCCEEEEEecCC--ceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEcc--CC-eeEEEEccC
Q 013457 16 APFRPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--AD-HTTAYSESC 90 (442)
Q Consensus 16 ~~~~~i~~is~G~~--~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G--~~-~~~~l~~~~ 90 (442)
+....|..++.... ..++-..||.|++|-..... ....+..+... ...|..++.. .. +.+.-..+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~--------~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d- 78 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA--------KNVDLLQSLRY-KHPLLCCNFIDNTDLQIYVGTVQ- 78 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT--------TEEEEEEEEEC-SSCEEEEEEEESSSEEEEEEETT-
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC--------ccccceeeeec-CCceEEEEECCCCCcEEEEEcCC-
Confidence 34556777776543 34444578999999643321 00112222222 2356666654 33 44455556
Q ss_pred CeEEEEecCCCCccCCCCCCCceeeEEecc-cCCCcEEEEEeC-CceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccce
Q 013457 91 MQVYSWGWGDFGRLGHGNSSDLFTPLPIKA-LHSLRVKQIACG-DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQ 168 (442)
Q Consensus 91 G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~Ia~G-~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~ 168 (442)
|.|+.|-....++ ...+.. .....|..++.. ....+....||.|+.|-...... ........+.
T Consensus 79 g~i~~wd~~~~~~-----------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~ 144 (342)
T 1yfq_A 79 GEILKVDLIGSPS-----------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GVIAVKNLNS 144 (342)
T ss_dssp SCEEEECSSSSSS-----------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BCEEEEESCS
T ss_pred CeEEEEEeccCCc-----------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---ccccccCCee
Confidence 9999995411111 122221 023356666654 56667778899999995322000 0000000000
Q ss_pred eeecccCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEec---CceEEEEeC
Q 013457 169 KLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACG---WRHTISVSS 245 (442)
Q Consensus 169 ~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G---~~~s~~lt~ 245 (442)
.... ....|..++...+..++.+.+|.|+.|-....+.. ............|..++.. ....++-..
T Consensus 145 ~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 214 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---------NGTIEESGLKYQIRDVALLPKEQEGYACSSI 214 (342)
T ss_dssp SSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---------CCEEEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred eEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc---------cceeeecCCCCceeEEEECCCCCCEEEEEec
Confidence 0001 22367788887777777788999999975431110 0111111122345555554 345556678
Q ss_pred CCCEEEEeCCCCCcCCCCCCCCccceeEecccC--------CCcEEEEEcC--CCceEEEeCCCcEEEeecC
Q 013457 246 SGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR--------ESFISQISGG--WRHTMAVTSDGKLYGWGWN 307 (442)
Q Consensus 246 ~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~--------~~~i~~I~~G--~~hs~~lt~~G~vy~wG~n 307 (442)
+|.+..|=....+.-. .......+.... ...|..++.. ....+.-..+|.|+.|=..
T Consensus 215 dg~i~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 215 DGRVAVEFFDDQGDDY-----NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp TSEEEEEECCTTCCST-----TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CCcEEEEEEcCCCccc-----ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 8888888654431000 000001111100 1136666553 3334455678999999643
No 64
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=60.17 E-value=1.6e+02 Score=30.27 Aligned_cols=231 Identities=14% Similarity=0.098 Sum_probs=112.6
Q ss_pred CCEEEEEecCC--ceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEcc--CCeeEEEEccCCeEE
Q 013457 19 RPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQVY 94 (442)
Q Consensus 19 ~~i~~is~G~~--~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G--~~~~~~l~~~~G~vy 94 (442)
..|..|+-... ..++-..+|.|.+|-.... .....+... ...|..++.. ..+.+....+ |.|+
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-----------~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-g~i~ 80 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-----------VEVRSIQVT-ETPVRAGKFIARKNWIIVGSDD-FRIR 80 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTT-----------EEEEEEECC-SSCEEEEEEEGGGTEEEEEETT-SEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCC-----------ceEEEEecC-CCcEEEEEEeCCCCEEEEEeCC-CeEE
Confidence 34566655433 3333446889999954321 111122211 2345555543 3444555566 9999
Q ss_pred EEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCC--ceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeec
Q 013457 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA 172 (442)
Q Consensus 95 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 172 (442)
.|-...... ...+.. ....|..++... .+.+.-+.||.|..|-..... .....+.
T Consensus 81 vw~~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----------~~~~~~~- 137 (814)
T 3mkq_A 81 VFNYNTGEK-----------VVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----------ALEQTFE- 137 (814)
T ss_dssp EEETTTCCE-----------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS----------EEEEEEE-
T ss_pred EEECCCCcE-----------EEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc----------eEEEEEc-
Confidence 996543211 111111 233577776553 345566778999999643210 0011111
Q ss_pred ccCCcEEEEEeCC---CeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEe----cCceEEEEeC
Q 013457 173 FEGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVAC----GWRHTISVSS 245 (442)
Q Consensus 173 ~~~~~i~~ia~G~---~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~----G~~~s~~lt~ 245 (442)
.....|..++... ...+....+|.|+.|-..... ....+.......+..++. .....+....
T Consensus 138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 206 (814)
T 3mkq_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (814)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence 1123566666543 345555678999999643210 011111111122333332 3345555567
Q ss_pred CCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCC--ceEEEeCCCcEEEeecCC
Q 013457 246 SGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR--HTMAVTSDGKLYGWGWNK 308 (442)
Q Consensus 246 ~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~--hs~~lt~~G~vy~wG~n~ 308 (442)
+|.|+.|-.... .....+.. ....|..++.... ..+....+|.|+.|-...
T Consensus 207 dg~i~~~d~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 207 DLTIKIWDYQTK-----------SCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp TSEEEEEETTTT-----------EEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred CCEEEEEECCCC-----------cEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 888888853211 11112221 1223666654433 344456789999996544
No 65
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=59.70 E-value=1.1e+02 Score=28.31 Aligned_cols=152 Identities=13% Similarity=0.082 Sum_probs=78.2
Q ss_pred EEccCCeeEEEE---ccCCeEEEEecCCCCccCCCCCCCceeeEEeccc--CCCcEEEEEeC---CceEEEEEcCCeEEE
Q 013457 76 VTCGADHTTAYS---ESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACG---DSHCLAVTVEGEVQS 147 (442)
Q Consensus 76 i~~G~~~~~~l~---~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~Ia~G---~~h~~~lt~~G~vy~ 147 (442)
+++...+..++. .+ |.|+.|-....+.+.. .+..+ ....|..++.. ....+.-..||.|..
T Consensus 40 ~~~~~~~~~~~~~~~~~-g~i~v~~~~~~~~~~~----------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~v 108 (402)
T 2aq5_A 40 CAVNPKFMALICEASGG-GAFLVLPLGKTGRVDK----------NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMV 108 (402)
T ss_dssp EEECSSEEEEEBCCSSS-CCEEEEETTCCEECCT----------TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred EEECCCeEEEEEEEcCC-CEEEEEECccCCCCCC----------CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEE
Confidence 455555555542 35 8999997655443311 11111 22367777764 445556678999999
Q ss_pred EeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCC---eEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEee-
Q 013457 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA- 223 (442)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~---h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~- 223 (442)
|-....+... ....+..........|..++.... ..+.-..||.|+.|-.... .....+.
T Consensus 109 w~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-----------~~~~~~~~ 172 (402)
T 2aq5_A 109 WEIPDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-----------AAVLTLGP 172 (402)
T ss_dssp EECCTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-----------EEEEEECT
T ss_pred EEccCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-----------CccEEEec
Confidence 9765432111 000111111112335777776544 3445567899999964321 0011110
Q ss_pred eeCCceEEEEEec--CceEEEEeCCCCEEEEeC
Q 013457 224 TVDREKMVMVACG--WRHTISVSSSGRLYSYGW 254 (442)
Q Consensus 224 ~~~~~~i~~I~~G--~~~s~~lt~~G~vy~~G~ 254 (442)
......|..++.. ....+....+|.|+.|-.
T Consensus 173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp TTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 1123456555553 334455567888888863
No 66
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=59.68 E-value=89 Score=27.23 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=11.5
Q ss_pred eEEEEeCCCCEEEEeC
Q 013457 239 HTISVSSSGRLYSYGW 254 (442)
Q Consensus 239 ~s~~lt~~G~vy~~G~ 254 (442)
..++++.+|++|.-..
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 4577777888887664
No 67
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=59.50 E-value=98 Score=27.67 Aligned_cols=15 Identities=13% Similarity=0.250 Sum_probs=10.3
Q ss_pred eEEEEEcCCC-EEEEe
Q 013457 339 HTLAVTERQN-VFSWG 353 (442)
Q Consensus 339 h~~alt~~g~-v~~wG 353 (442)
+.+++..+|+ +|.-.
T Consensus 317 ~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 317 NSLALSADGKTLYVSV 332 (353)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred CeEEEcCCCCEEEEEE
Confidence 5678888888 55443
No 68
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=59.19 E-value=1.7e+02 Score=30.25 Aligned_cols=199 Identities=13% Similarity=0.096 Sum_probs=102.0
Q ss_pred CCCEEEEEecCC--ceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEcc----CCeeEEEEccCC
Q 013457 18 FRPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG----ADHTTAYSESCM 91 (442)
Q Consensus 18 ~~~i~~is~G~~--~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G----~~~~~~l~~~~G 91 (442)
...|..++.... ..+.-..||.|.+|=.... .......+.. -...|..++.. ..+.+....| |
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~---------~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~D-g 77 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE---------THKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYD-G 77 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETT---------EEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETT-S
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCC---------CCccceeccC-CcCceEEEEecCCCCCCEEEEEeCC-C
Confidence 345666665433 3334447899999953210 0011111111 12367777764 3445555666 9
Q ss_pred eEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC----CceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccc
Q 013457 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG----DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVP 167 (442)
Q Consensus 92 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G----~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p 167 (442)
.|+.|-.... ...+..........|..++.. ....+..+.||.|..|-....... ..
T Consensus 78 ~I~vwd~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~---------~~ 138 (753)
T 3jro_A 78 KVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------SP 138 (753)
T ss_dssp CEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC---------CC
T ss_pred eEEEEECCCC----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc---------ce
Confidence 9999964321 111122222233467787765 345677788999999975432110 11
Q ss_pred eeeecccCCcEEEEEeCC---------------CeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEE
Q 013457 168 QKLQAFEGVSIKMVAAGA---------------EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVM 232 (442)
Q Consensus 168 ~~v~~~~~~~i~~ia~G~---------------~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ 232 (442)
..+.. ....|..++... ...+.-..||.|+.|-.... .....+..........|..
T Consensus 139 ~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~--------~~~~~~~~~~~~h~~~V~~ 209 (753)
T 3jro_A 139 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD--------AQTYVLESTLEGHSDWVRD 209 (753)
T ss_dssp EEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT--------TTEEEEEEEECCCSSCEEE
T ss_pred eEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC--------cccceeeeeecCCCCcEEE
Confidence 11111 122456665533 44566667999999954221 1111111111112345666
Q ss_pred EEecC-----ceEEEEeCCCCEEEEeCC
Q 013457 233 VACGW-----RHTISVSSSGRLYSYGWS 255 (442)
Q Consensus 233 I~~G~-----~~s~~lt~~G~vy~~G~n 255 (442)
++... ...+....+|.|+.|-..
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp EEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred EEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 66553 345555688999999643
No 69
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=58.50 E-value=1e+02 Score=27.68 Aligned_cols=196 Identities=11% Similarity=0.091 Sum_probs=99.6
Q ss_pred cEEEEEccCCe--eEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEeccc--CCCcEEEEEeC----CceEEEEEcCC
Q 013457 72 EIVSVTCGADH--TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACG----DSHCLAVTVEG 143 (442)
Q Consensus 72 ~i~~i~~G~~~--~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~Ia~G----~~h~~~lt~~G 143 (442)
.|..++...+. .+.-..+ |.|+.|=.... ....+..+ ....|..++.. ....+.-..||
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSD-KTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp CEEEEEECSSSSEEEEEETT-SCEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cEEEEEEcCCCCEEEEEECC-CcEEEEecCCC------------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 46666655433 3333345 89999954210 11222222 23468888764 45666677899
Q ss_pred eEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCC----CeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeee
Q 013457 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA----EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (442)
Q Consensus 144 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~----~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p 219 (442)
.|..|-.... ...+..........|..++... ...+....+|.|..|-...... ..+
T Consensus 80 ~v~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~~~ 140 (379)
T 3jrp_A 80 KVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSP 140 (379)
T ss_dssp CEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------CCE
T ss_pred EEEEEEcCCC----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------eee
Confidence 9999964321 0001111111233577776654 3566667899999996543211 011
Q ss_pred eEeeeeCCceEEEEEec---------------CceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEE
Q 013457 220 EKVATVDREKMVMVACG---------------WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ 284 (442)
Q Consensus 220 ~~v~~~~~~~i~~I~~G---------------~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ 284 (442)
..+ ......|..++.. ....+....+|.|+.|-..... ....+.....-....|..
T Consensus 141 ~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~h~~~v~~ 211 (379)
T 3jrp_A 141 III-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWVRD 211 (379)
T ss_dssp EEE-ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCEEE
T ss_pred EEe-cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC--------cceeeEEEEecccCcEeE
Confidence 111 1122345555443 3455566788899988532110 001111111111234777
Q ss_pred EEcCCC-----ceEEEeCCCcEEEeecCC
Q 013457 285 ISGGWR-----HTMAVTSDGKLYGWGWNK 308 (442)
Q Consensus 285 I~~G~~-----hs~~lt~~G~vy~wG~n~ 308 (442)
++.... ..+....+|.|..|-...
T Consensus 212 ~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 212 VAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred EEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 765543 344446789999996543
No 70
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=58.09 E-value=28 Score=31.23 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=11.5
Q ss_pred CeEEEEecCCcEEEEeC
Q 013457 186 EHSVAVAEDGELYGWGW 202 (442)
Q Consensus 186 ~h~~~Lt~~G~vy~wG~ 202 (442)
.|++++. +++||++|-
T Consensus 197 ~~~~~~~-~~~iyv~GG 212 (302)
T 2xn4_A 197 GAGVGVL-NNLLYAVGG 212 (302)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred cccEEEE-CCEEEEECC
Confidence 4555555 789999984
No 71
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=57.34 E-value=1e+02 Score=27.32 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=12.2
Q ss_pred CCeEEEEecCCcEEEEeC
Q 013457 185 AEHSVAVAEDGELYGWGW 202 (442)
Q Consensus 185 ~~h~~~Lt~~G~vy~wG~ 202 (442)
..|++++. +++||++|-
T Consensus 93 ~~~~~~~~-~~~iyv~GG 109 (306)
T 3ii7_A 93 DSLAACAA-EGKIYTSGG 109 (306)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred cceeEEEE-CCEEEEECC
Confidence 35666555 889999984
No 72
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=55.31 E-value=1.2e+02 Score=27.36 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=14.5
Q ss_pred cCCceEEEEeCCeEEEEeCCC
Q 013457 27 GASHSVALLSGNIVCSWGRGE 47 (442)
Q Consensus 27 G~~~~~~l~~~g~v~~wG~n~ 47 (442)
+.-..++++.+|++|+.+...
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~ 44 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGD 44 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTT
T ss_pred CCceEEEECCCCCEEEEeCCC
Confidence 445567777888888776554
No 73
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=55.23 E-value=1.2e+02 Score=27.55 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=13.1
Q ss_pred CceEEEEEcCCeEEEEeC
Q 013457 133 DSHCLAVTVEGEVQSWGR 150 (442)
Q Consensus 133 ~~h~~~lt~~G~vy~wG~ 150 (442)
..|++++ .+++||.+|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 4566666 7889999994
No 74
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=54.65 E-value=1.4e+02 Score=28.03 Aligned_cols=200 Identities=14% Similarity=0.103 Sum_probs=94.7
Q ss_pred eeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC---CceEEEEEcCCeEEEEeCCCCCCcCC
Q 013457 82 HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQSWGRNQNGQLGL 158 (442)
Q Consensus 82 ~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G---~~h~~~lt~~G~vy~wG~n~~gqlG~ 158 (442)
+.+.-..+ |.|+.|-.+...... ....+..........|..|+.. ....+....+|.|+.|-.......
T Consensus 196 ~l~s~~~d-g~i~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-- 267 (430)
T 2xyi_A 196 YLLSASDD-HTICLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-- 267 (430)
T ss_dssp EEEEECTT-SCEEEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS--
T ss_pred eEEEEeCC-CeEEEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC--
Confidence 33334445 999999765422110 0111111111223357777764 344555668999999976532100
Q ss_pred CCCCCcccceeeecccCCcEEEEEeCCC---eEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEe
Q 013457 159 GTTEDSLVPQKLQAFEGVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVAC 235 (442)
Q Consensus 159 ~~~~~~~~p~~v~~~~~~~i~~ia~G~~---h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~ 235 (442)
.....+. .....|..|+.... ..+.-..+|.|..|-....++ |..........|..|..
T Consensus 268 ------~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----------~~~~~~~h~~~v~~i~~ 329 (430)
T 2xyi_A 268 ------KPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----------KLHSFESHKDEIFQVQW 329 (430)
T ss_dssp ------SCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----------CSEEEECCSSCEEEEEE
T ss_pred ------cceeEee-cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----------CeEEeecCCCCEEEEEE
Confidence 0011111 12235666666432 234456789999997543221 11111112345666655
Q ss_pred cC---ceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEeccc--CCCcEEEEEcCCC---ceEEEeCCCcEEEeecC
Q 013457 236 GW---RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL--RESFISQISGGWR---HTMAVTSDGKLYGWGWN 307 (442)
Q Consensus 236 G~---~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~I~~G~~---hs~~lt~~G~vy~wG~n 307 (442)
.. ...+.-..+|.|..|-....+..-.........|..+..+ ....|..++.... ..+....+|.|..|-.+
T Consensus 330 sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 330 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 43 2344456788888886543221100000000001222222 1234766665433 33445678888888653
No 75
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=54.42 E-value=1.4e+02 Score=27.86 Aligned_cols=110 Identities=8% Similarity=-0.056 Sum_probs=53.9
Q ss_pred CCCEEEEEec----CCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCC-CCCcEEEEEccCC--eeEEEEccC
Q 013457 18 FRPVLLISAG----ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSAL-DGHEIVSVTCGAD--HTTAYSESC 90 (442)
Q Consensus 18 ~~~i~~is~G----~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~-~~~~i~~i~~G~~--~~~~l~~~~ 90 (442)
...++.+..- ....+.-..||.|+.|-..... ....+... ....|..++...+ +.+.-..+
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d- 235 (437)
T 3gre_A 168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-----------RLQIIENSPRHGAVSSICIDEECCVLILGTTR- 235 (437)
T ss_dssp CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-----------EEEEEECCGGGCCEEEEEECTTSCEEEEEETT-
T ss_pred ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-----------eeEEEccCCCCCceEEEEECCCCCEEEEEcCC-
Confidence 3445555421 3444555578888888643211 11111111 1235777776433 33344555
Q ss_pred CeEEEEecCCCCccCCCCCCCceeeEE-ecccCCCcEEEEEeCC----c--eEEEEEcCCeEEEEeCC
Q 013457 91 MQVYSWGWGDFGRLGHGNSSDLFTPLP-IKALHSLRVKQIACGD----S--HCLAVTVEGEVQSWGRN 151 (442)
Q Consensus 91 G~vy~wG~n~~gqlG~~~~~~~~~p~~-v~~~~~~~i~~Ia~G~----~--h~~~lt~~G~vy~wG~n 151 (442)
|.|..|-.... .+.. +.......|..++... + ..+.-..||.|..|-..
T Consensus 236 g~i~iwd~~~~------------~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 236 GIIDIWDIRFN------------VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp SCEEEEETTTT------------EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred CeEEEEEcCCc------------cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 89999964321 1111 1111223566664331 2 33444567889999754
No 76
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=53.99 E-value=1.2e+02 Score=26.93 Aligned_cols=203 Identities=10% Similarity=-0.049 Sum_probs=101.9
Q ss_pred cEEEEEccC--CeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC--Cc-eEEEEEcCCeEE
Q 013457 72 EIVSVTCGA--DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DS-HCLAVTVEGEVQ 146 (442)
Q Consensus 72 ~i~~i~~G~--~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~-h~~~lt~~G~vy 146 (442)
.|..++... .+.++-..+ |.|+.|-..... ....+..+. .....|..++.. .. +.+.-+.+|.|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d-~~v~iw~~~~~~--------~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWD-GSLTVYKFDIQA--------KNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETT-SEEEEEEEETTT--------TEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CeEEEEEeCCCC--------ccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 466666543 334444556 999999643221 011111111 223356666553 44 566777899999
Q ss_pred EEeC-CCCCCcCCCCCCCcccceeeec-ccCCcEEEEEeC-CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEee
Q 013457 147 SWGR-NQNGQLGLGTTEDSLVPQKLQA-FEGVSIKMVAAG-AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA 223 (442)
Q Consensus 147 ~wG~-n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~ia~G-~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~ 223 (442)
.|-. .. +++ ..+.. .....|..++.. ....+....+|.|+.|-...+..- .......+....
T Consensus 83 ~wd~~~~-~~~-----------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~ 147 (342)
T 1yfq_A 83 KVDLIGS-PSF-----------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG---VIAVKNLNSNNT 147 (342)
T ss_dssp EECSSSS-SSE-----------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB---CEEEEESCSSSS
T ss_pred EEEeccC-Cce-----------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccc---cccccCCeeeEE
Confidence 9964 22 111 11111 012345555543 566667778999999953221000 000000000000
Q ss_pred eeCCceEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCC---CceEEEeCCCc
Q 013457 224 TVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW---RHTMAVTSDGK 300 (442)
Q Consensus 224 ~~~~~~i~~I~~G~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~---~hs~~lt~~G~ 300 (442)
. ....|..++......++...+|.|+.|-....+.. ............|..|+... ...++-..+|.
T Consensus 148 ~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 148 K-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---------NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp S-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---------CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred e-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc---------cceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence 0 22456677666666667788899999975431110 01111111222366665543 44455567899
Q ss_pred EEEeecCCC
Q 013457 301 LYGWGWNKF 309 (442)
Q Consensus 301 vy~wG~n~~ 309 (442)
+..|-....
T Consensus 218 i~i~~~~~~ 226 (342)
T 1yfq_A 218 VAVEFFDDQ 226 (342)
T ss_dssp EEEEECCTT
T ss_pred EEEEEEcCC
Confidence 988876543
No 77
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=51.96 E-value=1.2e+02 Score=26.29 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=11.0
Q ss_pred eEEEEeCCCCEEEEeC
Q 013457 239 HTISVSSSGRLYSYGW 254 (442)
Q Consensus 239 ~s~~lt~~G~vy~~G~ 254 (442)
+.++++.+|++|....
T Consensus 186 ~~i~~~~~g~l~v~~~ 201 (299)
T 2z2n_A 186 VGITKGNDDALWFVEI 201 (299)
T ss_dssp EEEEECTTSSEEEEET
T ss_pred eeEEECCCCCEEEEcc
Confidence 4567777888887653
No 78
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=51.35 E-value=1.6e+02 Score=27.68 Aligned_cols=122 Identities=14% Similarity=0.088 Sum_probs=66.8
Q ss_pred EEccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC-----CceEEEEEcCCeEEEEeC
Q 013457 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGR 150 (442)
Q Consensus 76 i~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G-----~~h~~~lt~~G~vy~wG~ 150 (442)
++.+.++.+++|+. |++|.+-..+.-..+.... -......+....+.+|+.+..- ..+.+++|++|.+.-.-.
T Consensus 53 ~~~t~d~ll~fT~~-G~~~~~~~~eip~~~r~a~-G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l 130 (370)
T 3l6v_A 53 LVNTHDTLLTFTSS-GKVFWLPVHQLPEAGSNAR-GRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPL 130 (370)
T ss_dssp EECTTCEEEEEETT-SEEEEEEGGGSCBCCTTSC-CEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EecCCCEEEEEeCC-CeEEEEEHHHCcCCCcccC-CcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEH
Confidence 34455667778888 9999886544332222110 0000111222356788887653 347889999999887764
Q ss_pred CCCCCcCCCCCCCcccceeeecccCCcEE--EEEeCCCeEEEEecCCcEEEEeCCCC
Q 013457 151 NQNGQLGLGTTEDSLVPQKLQAFEGVSIK--MVAAGAEHSVAVAEDGELYGWGWGRY 205 (442)
Q Consensus 151 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~--~ia~G~~h~~~Lt~~G~vy~wG~n~~ 205 (442)
..+-.... .-..-..+. ++..++ .+..+.++.+++|++|++.-+-...-
T Consensus 131 ~e~~~~~~----~G~~ai~L~--~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v 181 (370)
T 3l6v_A 131 SEFAFRLA----RGKIAINLD--EGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 181 (370)
T ss_dssp GGGCSCCT----TCEESSCCC--TTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGS
T ss_pred HHhhcccC----CceEEEEeC--CCCEEEEEEEeCCCceEEEEeCCCeEEEEEcccc
Confidence 44322110 000000111 122333 33456778999999999988865443
No 79
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=49.10 E-value=1.4e+02 Score=26.33 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=12.0
Q ss_pred CceEEEEEcCCeEEEEeC
Q 013457 133 DSHCLAVTVEGEVQSWGR 150 (442)
Q Consensus 133 ~~h~~~lt~~G~vy~wG~ 150 (442)
..|++++. +++||.+|-
T Consensus 151 ~~~~~~~~-~~~iyv~GG 167 (301)
T 2vpj_A 151 EGAGLVVA-SGVIYCLGG 167 (301)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred ccceEEEE-CCEEEEECC
Confidence 34555554 789999984
No 80
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=48.92 E-value=1.4e+02 Score=26.32 Aligned_cols=76 Identities=11% Similarity=0.094 Sum_probs=36.7
Q ss_pred ccCCcEEEEEeC-CCeEEEEecCCc-EEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceEEEEeCCCC-E
Q 013457 173 FEGVSIKMVAAG-AEHSVAVAEDGE-LYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGR-L 249 (442)
Q Consensus 173 ~~~~~i~~ia~G-~~h~~~Lt~~G~-vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~-v 249 (442)
+.+-++.-..++ ....++++.+|+ ++.++.... + ......|..+....+..+.-.........+++.+|+ +
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~ 158 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLL 158 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEE
T ss_pred CCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceECCCCCEEEEecCCCEEEEECCCCCEE
Confidence 344455555566 555666777887 455543210 0 001111222223333344433334456667777776 6
Q ss_pred EEEeC
Q 013457 250 YSYGW 254 (442)
Q Consensus 250 y~~G~ 254 (442)
|.++.
T Consensus 159 w~~~~ 163 (276)
T 3no2_A 159 NSVKL 163 (276)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66664
No 81
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=47.16 E-value=1.7e+02 Score=26.82 Aligned_cols=231 Identities=10% Similarity=-0.023 Sum_probs=116.2
Q ss_pred CCCCCEEE--EEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccc--eeecCCCCCcEEEEEccC-----CeeEEE
Q 013457 16 APFRPVLL--ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTCGA-----DHTTAY 86 (442)
Q Consensus 16 ~~~~~i~~--is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P--~~v~~~~~~~i~~i~~G~-----~~~~~l 86 (442)
...+.++. ++....+.+++++.|++|.+--.+--..+. ...-.| ..+..-++..|+.+..-. .+.+++
T Consensus 36 ke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r---~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~ 112 (323)
T 1wp5_A 36 KDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW---KDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFV 112 (323)
T ss_dssp CTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCT---TSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEE
T ss_pred CCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCC---CCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEE
Confidence 34455544 455678889999999999876433111111 111111 112222445677654432 356777
Q ss_pred EccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEE--EeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCc
Q 013457 87 SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDS 164 (442)
Q Consensus 87 ~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I--a~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~ 164 (442)
|++ |.+.-.-..++-..... .--..+....+..++.+ ..+.++.+++|++|+++-+-.++--.+|......
T Consensus 113 T~~-G~iKrt~l~e~~~~~r~-----~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV- 185 (323)
T 1wp5_A 113 TRN-GMVKKTELKHYKAQRYS-----KPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGV- 185 (323)
T ss_dssp ETT-SEEEEEEGGGGCCSCCS-----SCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCE-
T ss_pred eCC-CeEEEeEHHHhhhcccc-----CceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCE-
Confidence 777 98887765443221100 00111112223344443 3467889999999999999876544444322111
Q ss_pred ccceeeecccCCcEEEEEe--CCC-eEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEE--EEecCce
Q 013457 165 LVPQKLQAFEGVSIKMVAA--GAE-HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVM--VACGWRH 239 (442)
Q Consensus 165 ~~p~~v~~~~~~~i~~ia~--G~~-h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~--I~~G~~~ 239 (442)
..+..-++..|+.+.. ... ..+++|++|...-.-...+-..+.+... ...+.... -.+..++. +..+...
T Consensus 186 ---~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kG-v~~~~~~~-~~~~~l~~~~~v~~~~~ 260 (323)
T 1wp5_A 186 ---KGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRG-VVILRELK-ANPHRISGFVVAQDSDT 260 (323)
T ss_dssp ---ECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCC-EECSCCCS-SSCCCEEEEEEECTTCE
T ss_pred ---EEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCC-EECeeecC-CCCceEEEEEEeCCCCe
Confidence 1111123445665532 223 6777888887555444333222211111 01111010 01123332 2345677
Q ss_pred EEEEeCCCCEEEEeCCCCCcCC
Q 013457 240 TISVSSSGRLYSYGWSKYGQLG 261 (442)
Q Consensus 240 s~~lt~~G~vy~~G~n~~gqlG 261 (442)
.++++++|.+.-+--++....|
T Consensus 261 i~~it~~g~~ir~~~~~i~~~~ 282 (323)
T 1wp5_A 261 IYLQTEKSFIETIKVGDIRFSD 282 (323)
T ss_dssp EEEEETTSCEEEEEGGGSCBCC
T ss_pred EEEEeCCCeEEEEEhhhcCccC
Confidence 8899999998877655544443
No 82
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=47.10 E-value=1.7e+02 Score=26.66 Aligned_cols=27 Identities=7% Similarity=-0.049 Sum_probs=14.4
Q ss_pred cEEEEEccCC--eeEEEEccCCeEEEEec
Q 013457 72 EIVSVTCGAD--HTTAYSESCMQVYSWGW 98 (442)
Q Consensus 72 ~i~~i~~G~~--~~~~l~~~~G~vy~wG~ 98 (442)
.+..++...+ +.++...+++.|+.|-.
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~ 103 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDT 103 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEEC
Confidence 4666655433 23333333388888854
No 83
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=46.34 E-value=1.7e+02 Score=26.54 Aligned_cols=224 Identities=13% Similarity=0.091 Sum_probs=113.1
Q ss_pred CCCCEEE--EEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccc--eeecCCCCCcEEEEEc-----cCCeeEEEE
Q 013457 17 PFRPVLL--ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTC-----GADHTTAYS 87 (442)
Q Consensus 17 ~~~~i~~--is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P--~~v~~~~~~~i~~i~~-----G~~~~~~l~ 87 (442)
..+.++. ++....+.+++|+.|++|.+=..+--..+. ...-.| ..+..-++..|+.+.. ...+.+++|
T Consensus 40 e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~---~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T 116 (307)
T 1zi0_A 40 EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR---GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMAT 116 (307)
T ss_dssp --CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCS---SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCC---CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEe
Confidence 3455544 445677889999999999876443211111 111112 1222234556777654 233567778
Q ss_pred ccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEE--EeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcc
Q 013457 88 ESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSL 165 (442)
Q Consensus 88 ~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I--a~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 165 (442)
++ |.+.-.-..++-.... ..-..+....+..++.+ ..+..+.+++|++|+++-+-..+--.+|......
T Consensus 117 ~~-G~~Krt~l~e~~~~~r------~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv-- 187 (307)
T 1zi0_A 117 AN-GTVKKTVLTEFNRLRT------AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV-- 187 (307)
T ss_dssp TT-SEEEEEEGGGGTTCCT------TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE--
T ss_pred CC-CeEEEEEHHHhhcccc------CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe--
Confidence 77 9888765433321110 00011111123445443 3467789999999999999766544444322111
Q ss_pred cceeeecccCCcEEEEEeC--CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEe--cCceEE
Q 013457 166 VPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVAC--GWRHTI 241 (442)
Q Consensus 166 ~p~~v~~~~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~--G~~~s~ 241 (442)
..+..-++..|+.+..- ....+++|++|.+--.-...|-.-+.+.... ..+. +. -....++.+.. .....+
T Consensus 188 --~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~-~~~~-~~-~~~~~lv~~~~v~~~~~l~ 262 (307)
T 1zi0_A 188 --RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV-ISIK-VT-ERNGLVVGAVQVDDCDQIM 262 (307)
T ss_dssp --ECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE-ESSC-CC-TTTCSEEEEEEECTTCEEE
T ss_pred --EeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE-EeeE-ec-CCCCeEEEEEEeCCCceEE
Confidence 11222245567766542 3456778888875554333322111111100 0000 00 01134444333 456678
Q ss_pred EEeCCCCEEEEeCCCC
Q 013457 242 SVSSSGRLYSYGWSKY 257 (442)
Q Consensus 242 ~lt~~G~vy~~G~n~~ 257 (442)
+++++|.+.-+--+.-
T Consensus 263 ~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 263 MITDAGTLVRTRVSEI 278 (307)
T ss_dssp EEESSCCEEEEEGGGS
T ss_pred EEcCCCcEEEEecccc
Confidence 8999999887765443
No 84
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=43.61 E-value=1.6e+02 Score=25.40 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=10.7
Q ss_pred eEEEEeCCCCEEEEeC
Q 013457 239 HTISVSSSGRLYSYGW 254 (442)
Q Consensus 239 ~s~~lt~~G~vy~~G~ 254 (442)
..++++.+|++|....
T Consensus 191 ~~i~~d~~g~l~v~~~ 206 (300)
T 2qc5_A 191 VGITSGNDGALWFVEI 206 (300)
T ss_dssp EEEEECTTSSEEEEET
T ss_pred ceEEECCCCCEEEEcc
Confidence 4566777788887553
No 85
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=42.67 E-value=3e+02 Score=28.29 Aligned_cols=196 Identities=11% Similarity=0.095 Sum_probs=99.4
Q ss_pred cEEEEEccCC--eeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEeccc--CCCcEEEEEeC----CceEEEEEcCC
Q 013457 72 EIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACG----DSHCLAVTVEG 143 (442)
Q Consensus 72 ~i~~i~~G~~--~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~Ia~G----~~h~~~lt~~G 143 (442)
.|..++...+ +.+.-..+ |.|..|-.... ....+..+ ....|..++.. ....+.-..||
T Consensus 11 ~V~~l~~s~dg~~latg~~d-g~I~vwd~~~~------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSD-KTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp CEEEECCCSSSCCEEEEETT-TEEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred eeEEEEECCCCCeEEEEECC-CcEEEEecCCC------------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 4555554432 23333456 99999953210 11122222 23368888764 45566777899
Q ss_pred eEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCC----CeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeee
Q 013457 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA----EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (442)
Q Consensus 144 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~----~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p 219 (442)
.|+.|-.... ...+..........|..++... ...+.-+.+|.|+.|-....... ..
T Consensus 78 ~I~vwd~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~---------~~ 138 (753)
T 3jro_A 78 KVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------SP 138 (753)
T ss_dssp CEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC---------CC
T ss_pred eEEEEECCCC----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc---------ce
Confidence 9999964321 0001111111233577777653 45666778999999965332110 01
Q ss_pred eEeeeeCCceEEEEEec---------------CceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEE
Q 013457 220 EKVATVDREKMVMVACG---------------WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ 284 (442)
Q Consensus 220 ~~v~~~~~~~i~~I~~G---------------~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ 284 (442)
..+ ......|..+... ....+.-..+|.|+.|-..... ....+..........|..
T Consensus 139 ~~~-~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--------~~~~~~~~~~~h~~~V~~ 209 (753)
T 3jro_A 139 III-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWVRD 209 (753)
T ss_dssp EEE-ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCEEE
T ss_pred eEe-ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc--------ccceeeeeecCCCCcEEE
Confidence 111 1112345555443 2345566778988888532210 011111111112234777
Q ss_pred EEcCCC-----ceEEEeCCCcEEEeecCC
Q 013457 285 ISGGWR-----HTMAVTSDGKLYGWGWNK 308 (442)
Q Consensus 285 I~~G~~-----hs~~lt~~G~vy~wG~n~ 308 (442)
++.... ..+.-..+|.|+.|-...
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred EEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 776543 334446789999997554
No 86
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=42.57 E-value=2e+02 Score=26.21 Aligned_cols=189 Identities=12% Similarity=0.128 Sum_probs=91.9
Q ss_pred cEEEEEccCC--eeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC---CceEEEEEcCCeEE
Q 013457 72 EIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQ 146 (442)
Q Consensus 72 ~i~~i~~G~~--~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G---~~h~~~lt~~G~vy 146 (442)
.|..|+...+ +.+.-..+ |.|..|-..... ....+. .....|..|+.. ....+....||.|.
T Consensus 141 ~V~~v~~spdg~~l~sgs~d-g~v~iwd~~~~~-----------~~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~ 207 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKD-FSVKVWDLSQKA-----------VLKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRIL 207 (357)
T ss_dssp CEEEEEECSSSSEEEEEETT-SCEEEEETTTTE-----------EEEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEE
T ss_pred CEEEEEECCCCCEEEEEeCC-CeEEEEECCCCc-----------EEEEEc-CCCCCEEEEEEccCCCceeeeeccCCceE
Confidence 5777766544 33333456 899999543210 111111 123367777653 23455667889999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeee-cccCCcEEEEEeCC--CeEE-EEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEe
Q 013457 147 SWGRNQNGQLGLGTTEDSLVPQKLQ-AFEGVSIKMVAAGA--EHSV-AVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKV 222 (442)
Q Consensus 147 ~wG~n~~gqlG~~~~~~~~~p~~v~-~~~~~~i~~ia~G~--~h~~-~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v 222 (442)
.|-......+ ..+. ......+..++... .+.+ .-..++.|+.|-.... + +.+.
T Consensus 208 ~wd~~~~~~~-----------~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~-----------~~~~ 264 (357)
T 4g56_B 208 LWDTRKPKPA-----------TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-D-----------SAQT 264 (357)
T ss_dssp ECCTTSSSCB-----------CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-G-----------GCEE
T ss_pred EEECCCCcee-----------eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-c-----------EeEE
Confidence 9953221100 0000 11123466666532 2333 3467899999953211 1 1111
Q ss_pred eeeCCceEEEEEecC---ceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCC-Cc--eEEEe
Q 013457 223 ATVDREKMVMVACGW---RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW-RH--TMAVT 296 (442)
Q Consensus 223 ~~~~~~~i~~I~~G~---~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~-~h--s~~lt 296 (442)
.......|..++... ...+.-.+||.|+.|=... ++ ...... ....|..|+... .. .+.-.
T Consensus 265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~-----------~~~~~~-H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-SE-----------VFRDLS-HRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CE-----------EEEECC-CSSCEEEEEECSSSTTEEEEEE
T ss_pred EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-Cc-----------EeEECC-CCCCEEEEEEeCCCCCEEEEEc
Confidence 111224566666432 3334456889999994321 11 111111 123477777542 22 22335
Q ss_pred CCCcEEEeecCCC
Q 013457 297 SDGKLYGWGWNKF 309 (442)
Q Consensus 297 ~~G~vy~wG~n~~ 309 (442)
.||.|+.|=....
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 7899999965443
No 87
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=41.90 E-value=2e+02 Score=26.18 Aligned_cols=202 Identities=8% Similarity=0.058 Sum_probs=94.6
Q ss_pred CCCCEEEEEecCCc--eEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEcc---CCeeEEEEccCC
Q 013457 17 PFRPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG---ADHTTAYSESCM 91 (442)
Q Consensus 17 ~~~~i~~is~G~~~--~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G---~~~~~~l~~~~G 91 (442)
....|..++-.... .+.-..||.|.+|=...... .......+.. ....|..++.. ....+.-..+ |
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d-g 136 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------AINSMARFSN-HSSSVKTVKFNAKQDNVLASGGNN-G 136 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------CCCEEEECCC-SSSCCCEEEECSSSTTBEEEECSS-S
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-------cccchhhccC-CccceEEEEEcCCCCCEEEEEcCC-C
Confidence 34567777764433 33334788999885433100 0001111111 11345556554 3334444455 9
Q ss_pred eEEEEecCCCCccCCCCCCCceeeEEec--ccCCCcEEEEEeCCc---eEEEEEcCCeEEEEeCCCCCCcCCCCCCCccc
Q 013457 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIK--ALHSLRVKQIACGDS---HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLV 166 (442)
Q Consensus 92 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~--~~~~~~i~~Ia~G~~---h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~ 166 (442)
.|+.|-........ ....+..+. ......|..++.... ..+.-..+|.|+.|-..... .
T Consensus 137 ~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----------~ 200 (416)
T 2pm9_A 137 EIFIWDMNKCTESP-----SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK-----------E 200 (416)
T ss_dssp CEEBCBTTTTSSCT-----TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE-----------E
T ss_pred eEEEEECCCCcccc-----ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-----------c
Confidence 99999654322000 000111110 111235666665433 34444678999999653311 0
Q ss_pred ceeeeccc-----CCcEEEEEeCCC---eEEEEecCC---cEEEEeCCCCCCcCCCCCCCeeeeeEeee-eCCceEEEEE
Q 013457 167 PQKLQAFE-----GVSIKMVAAGAE---HSVAVAEDG---ELYGWGWGRYGNLGLGDRNDRLIPEKVAT-VDREKMVMVA 234 (442)
Q Consensus 167 p~~v~~~~-----~~~i~~ia~G~~---h~~~Lt~~G---~vy~wG~n~~GqlG~~~~~~~~~p~~v~~-~~~~~i~~I~ 234 (442)
...+.... ...|..++...+ ..+.-..+| .|+.|-.....+. ..... .....|..++
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-----------~~~~~~~~~~~v~~~~ 269 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-----------LQTLNQGHQKGILSLD 269 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-----------SBCCCSCCSSCEEEEE
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-----------cEEeecCccCceeEEE
Confidence 11111110 335666665543 344455666 8888864432111 00001 1123455555
Q ss_pred e---cCceEEEEeCCCCEEEEeC
Q 013457 235 C---GWRHTISVSSSGRLYSYGW 254 (442)
Q Consensus 235 ~---G~~~s~~lt~~G~vy~~G~ 254 (442)
. .....+.-..+|.|+.|=.
T Consensus 270 ~s~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 270 WCHQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp ECSSCSSCEEEEESSSEEEEECS
T ss_pred eCCCCCCeEEEEeCCCCEEEeeC
Confidence 4 3445666677899999853
No 88
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=40.02 E-value=1.7e+02 Score=24.81 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=11.5
Q ss_pred eEEEEeCCCCEEEEeC
Q 013457 239 HTISVSSSGRLYSYGW 254 (442)
Q Consensus 239 ~s~~lt~~G~vy~~G~ 254 (442)
+.++++.+|++|.-..
T Consensus 237 ~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 237 LAVAVDSDRTVYVADR 252 (270)
T ss_dssp EEEEECTTCCEEEEEG
T ss_pred eeEEECCCCCEEEEEC
Confidence 5677778888887653
No 89
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=39.24 E-value=2.2e+02 Score=25.78 Aligned_cols=215 Identities=13% Similarity=0.135 Sum_probs=109.0
Q ss_pred EEccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceee--EEecccCCCcEEEEEe-----CCceEEEEEcCCeEEEE
Q 013457 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTP--LPIKALHSLRVKQIAC-----GDSHCLAVTVEGEVQSW 148 (442)
Q Consensus 76 i~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p--~~v~~~~~~~i~~Ia~-----G~~h~~~lt~~G~vy~w 148 (442)
++...++.+++|+. |++|..-..+.-..+.. ..-.| ..+....+++|+.+.. ...+.+++|++|.+.-.
T Consensus 49 ~~~~~~~ll~fT~~-G~~~~~~~~elp~~~~~---a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt 124 (307)
T 1zi0_A 49 VANTHDHILCFSSR-GRVYSMKVYQLPEATRG---ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 124 (307)
T ss_dssp EEETTCEEEEEETT-SEEEEEEGGGSCCCCSS---SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEE
T ss_pred EECCCCEEEEEECC-CEEEEEEhhHCcCCCCC---CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEE
Confidence 45566778888888 99999876543332221 11111 1122335667887754 23457888999998877
Q ss_pred eCCCCCCcCCCCCCCccccee-eecccCCcEEE--EEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeee
Q 013457 149 GRNQNGQLGLGTTEDSLVPQK-LQAFEGVSIKM--VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV 225 (442)
Q Consensus 149 G~n~~gqlG~~~~~~~~~p~~-v~~~~~~~i~~--ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~ 225 (442)
-...+-.... .... +..-++..++. ...+.++.+++|++|+++-+-..+.-.+|...... ..+..-
T Consensus 125 ~l~e~~~~~r-------~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv----~~i~L~ 193 (307)
T 1zi0_A 125 VLTEFNRLRT-------AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV----RGIRLG 193 (307)
T ss_dssp EGGGGTTCCT-------TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE----ECCCCC
T ss_pred EHHHhhcccc-------CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe----EeEEeC
Confidence 5433211110 0001 11112233433 33467789999999999988765543333321111 112222
Q ss_pred CCceEEEEEec--CceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEE--cCCCceEEEeCCCcE
Q 013457 226 DREKMVMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQIS--GGWRHTMAVTSDGKL 301 (442)
Q Consensus 226 ~~~~i~~I~~G--~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~--~G~~hs~~lt~~G~v 301 (442)
.++.|+.+..- ....++++++|.+--.-..+|-.-+.+... ...+. +.. .+..+..+. ......+++|++|++
T Consensus 194 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG-~~~~~-~~~-~~~~lv~~~~v~~~~~l~~~t~~g~~ 270 (307)
T 1zi0_A 194 EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG-VISIK-VTE-RNGLVVGAVQVDDCDQIMMITDAGTL 270 (307)
T ss_dssp TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC-EESSC-CCT-TTCSEEEEEEECTTCEEEEEESSCCE
T ss_pred CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC-EEeeE-ecC-CCCeEEEEEEeCCCceEEEEcCCCcE
Confidence 44566666432 234677788877555443333322221100 00011 110 112233322 245667888999988
Q ss_pred EEeecCC
Q 013457 302 YGWGWNK 308 (442)
Q Consensus 302 y~wG~n~ 308 (442)
.-+-.++
T Consensus 271 ir~~~~~ 277 (307)
T 1zi0_A 271 VRTRVSE 277 (307)
T ss_dssp EEEEGGG
T ss_pred EEEeccc
Confidence 7655443
No 90
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=38.10 E-value=2.1e+02 Score=25.26 Aligned_cols=199 Identities=11% Similarity=0.066 Sum_probs=95.1
Q ss_pred CCCEEEEEecCC-----ceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEc--------cCCeeE
Q 013457 18 FRPVLLISAGAS-----HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTC--------GADHTT 84 (442)
Q Consensus 18 ~~~i~~is~G~~-----~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~--------G~~~~~ 84 (442)
...|..++.... ..+.-..||.|..|-..... .....+.. ....|..+.. ...+.+
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~-~~~~v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE----------MPVYSVKG-HKEIINAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS----------SCSEEECC-CSSCEEEEEEESGGGCC-CCCEEE
T ss_pred cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC----------ccEEEEEe-cccceEEEeeccccccCCCccEEE
Confidence 345566655443 23334467888888543321 01111111 1234666632 233444
Q ss_pred EEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEE------eCCceEEEEEcCCeEEEEeCCCCCCcCC
Q 013457 85 AYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA------CGDSHCLAVTVEGEVQSWGRNQNGQLGL 158 (442)
Q Consensus 85 ~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia------~G~~h~~~lt~~G~vy~wG~n~~gqlG~ 158 (442)
.-..+ |.|+.|-...... ...............+..++ ......+.-..+|.|+.|-.....
T Consensus 134 ~~~~d-~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---- 201 (357)
T 3i2n_A 134 TGSRD-GTVKVWDPRQKDD-------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA---- 201 (357)
T ss_dssp EEETT-SCEEEECTTSCSS-------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE----
T ss_pred EEeCC-CeEEEEeCCCCCC-------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc----
Confidence 45556 9999995432210 01111111111122566665 334555666778999999653311
Q ss_pred CCCCCcccceeeecccCCcEEEEEeC-----CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEE
Q 013457 159 GTTEDSLVPQKLQAFEGVSIKMVAAG-----AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMV 233 (442)
Q Consensus 159 ~~~~~~~~p~~v~~~~~~~i~~ia~G-----~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I 233 (442)
+...... ...|..++.. ....++-..+|.|+.|-...... ... .+..........|..+
T Consensus 202 --------~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~-~~~~~~~~~~~~v~~~ 265 (357)
T 3i2n_A 202 --------LRWETNI-KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP------TKG-FASVSEKAHKSTVWQV 265 (357)
T ss_dssp --------EEEEEEC-SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET------TTE-EEEEEEECCSSCEEEE
T ss_pred --------eeeecCC-CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc------ccc-eeeeccCCCcCCEEEE
Confidence 1111111 2356666654 35566667899999985422100 000 1100111223456666
Q ss_pred EecCc---eEEEEeCCCCEEEEeCC
Q 013457 234 ACGWR---HTISVSSSGRLYSYGWS 255 (442)
Q Consensus 234 ~~G~~---~s~~lt~~G~vy~~G~n 255 (442)
+.... ..+.-..+|.|+.|=..
T Consensus 266 ~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 266 RHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp EEETTEEEEEEEEETTSEEEEEEEE
T ss_pred EECCCCCcEEEEEeCCCcEEEeecC
Confidence 65544 34445678889888753
No 91
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=37.64 E-value=2e+02 Score=24.75 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=11.7
Q ss_pred ceEEEEeCCCCEEEEeC
Q 013457 238 RHTISVSSSGRLYSYGW 254 (442)
Q Consensus 238 ~~s~~lt~~G~vy~~G~ 254 (442)
-+.++++.+|++|....
T Consensus 143 ~~~i~~~~~g~l~v~~~ 159 (299)
T 2z2n_A 143 PSFITLGSDNALWFTEN 159 (299)
T ss_dssp EEEEEECTTSCEEEEET
T ss_pred CceEEEcCCCCEEEEeC
Confidence 35667777888887653
No 92
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=37.43 E-value=2.6e+02 Score=26.16 Aligned_cols=133 Identities=11% Similarity=0.027 Sum_probs=70.4
Q ss_pred CCCEEEEE--ecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEcc-----CCeeEEEEccC
Q 013457 18 FRPVLLIS--AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG-----ADHTTAYSESC 90 (442)
Q Consensus 18 ~~~i~~is--~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G-----~~~~~~l~~~~ 90 (442)
.+.++.+. .+..+.+++|+.|++|.+=-.+--..+... .-...-..++.-++..|+.+..- ..+.+++|++
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a-~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~- 122 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNA-RGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRN- 122 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTS-CCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETT-
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCccc-CCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCC-
Confidence 45565444 345567889999999977533211111100 00011111222245678877653 3367777877
Q ss_pred CeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEE--EeCCceEEEEEcCCeEEEEeCCCCCCcCC
Q 013457 91 MQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGL 158 (442)
Q Consensus 91 G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I--a~G~~h~~~lt~~G~vy~wG~n~~gqlG~ 158 (442)
|.+.-.-..++-... .. --..+..-.+..++.+ ..+..+.+++|++|++.-+-.+.--.+|.
T Consensus 123 G~vKrt~l~e~~~~~---~~---G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR 186 (370)
T 3l6v_A 123 GTVKKTPLSEFAFRL---AR---GKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 186 (370)
T ss_dssp SEEEEEEGGGGCSCC---TT---CEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred CeEEEeEHHHhhccc---CC---ceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCC
Confidence 988877654443211 00 0011111123344433 34677899999999999886554444443
No 93
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=37.40 E-value=2.4e+02 Score=25.65 Aligned_cols=136 Identities=12% Similarity=0.058 Sum_probs=0.0
Q ss_pred CceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCC
Q 013457 133 DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGD 212 (442)
Q Consensus 133 ~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~ 212 (442)
....++.+.+|.|+++ +...-+.+-.........+.......++.+.+|.|+++ +
T Consensus 239 ~~~v~~~~~~g~l~~~--------------d~~tG~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~-----------d 293 (376)
T 3q7m_A 239 NGVVFALAYNGNLTAL--------------DLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMAL-----------T 293 (376)
T ss_dssp TTEEEEECTTSCEEEE--------------ETTTCCEEEEECCCCEEEEEEETTEEEEEETTCCEEEE-----------E
T ss_pred CCEEEEEecCcEEEEE--------------ECCCCcEEeeccCCCCCCceEECCEEEEEcCCCeEEEE-----------E
Q ss_pred CCCeeeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCCce
Q 013457 213 RNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHT 292 (442)
Q Consensus 213 ~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~hs 292 (442)
...-..--+...+....+........+.++.+.+|.||++ +...-..--....................
T Consensus 294 ~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~-----------d~~tG~~~~~~~~~~~~~~~~~~~~~~~l 362 (376)
T 3q7m_A 294 IDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWI-----------NVEDGRFVAQQKVDSSGFQTEPVAADGKL 362 (376)
T ss_dssp TTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEE-----------ETTTCCEEEEEECCTTCBCSCCEEETTEE
T ss_pred CCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEE-----------ECCCCcEEEEEecCCCcceeCCEEECCEE
Q ss_pred EEEeCCCcEEEe
Q 013457 293 MAVTSDGKLYGW 304 (442)
Q Consensus 293 ~~lt~~G~vy~w 304 (442)
++.+.+|.||++
T Consensus 363 ~v~~~~G~l~~~ 374 (376)
T 3q7m_A 363 LIQAKDGTVYSI 374 (376)
T ss_dssp EEEBTTSCEEEE
T ss_pred EEEeCCCEEEEE
No 94
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=37.33 E-value=2.2e+02 Score=25.11 Aligned_cols=157 Identities=13% Similarity=0.089 Sum_probs=83.1
Q ss_pred eEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEE--EEeCCCeEEEEecCCcEEEEeCCCCCCcCCCC
Q 013457 135 HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM--VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGD 212 (442)
Q Consensus 135 h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~ 212 (442)
-.+++|++|.|-......++. ..+..-++..+.. .+...++.+++|++|++|..--.+. -...
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~------------~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~el---p~~r 68 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDA------------PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL---PSAR 68 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCS------------TTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGS---CCSS
T ss_pred EEEEEeCCCEEEEeeCCcCCc------------eeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHC---CCcC
Confidence 356788999886654322211 0111112223333 4556778999999999998865432 0000
Q ss_pred CCCeeeeeEeeeeCCceEEEEEec--CceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEeccc-CCCcEEE--EE-
Q 013457 213 RNDRLIPEKVATVDREKMVMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL-RESFISQ--IS- 286 (442)
Q Consensus 213 ~~~~~~p~~v~~~~~~~i~~I~~G--~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~-~~~~i~~--I~- 286 (442)
..-......+....+++|+.+... ..+.+++|++|.+.-.--.++-....+. ..+..+ .+..+.. +.
T Consensus 69 ~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G-------~~~i~L~~~d~lv~~~~~~ 141 (256)
T 1zvt_A 69 GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAG-------KALITLPENAHVMPPVVIE 141 (256)
T ss_dssp SCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTC-------EECBCCCTTCCBCCCEECC
T ss_pred CCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCc-------eEEEEECCCCEEEEEEEec
Confidence 011111112333345678777653 3457788999988877654442111110 011111 1112222 22
Q ss_pred cCCCceEEEeCCCcEEEeecCCCcccc
Q 013457 287 GGWRHTMAVTSDGKLYGWGWNKFGQVG 313 (442)
Q Consensus 287 ~G~~hs~~lt~~G~vy~wG~n~~GqLG 313 (442)
.+..+.+++|++|++.-+-.++.-.+|
T Consensus 142 ~~~~~i~l~T~~G~~lrf~~~ei~~~g 168 (256)
T 1zvt_A 142 DASDMLLAITQAGRMLMFPVSDLPQLS 168 (256)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGSCBCS
T ss_pred CCCCEEEEEcCCCeEEEEEHHHCCCcC
Confidence 356788899999999888766554443
No 95
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=36.75 E-value=2.3e+02 Score=25.32 Aligned_cols=231 Identities=8% Similarity=-0.093 Sum_probs=0.0
Q ss_pred CeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCC
Q 013457 81 DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGT 160 (442)
Q Consensus 81 ~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~ 160 (442)
...+.-..| |.|+.| +......+..+....|..+..... .+.-..|+.|..|-.+..-.+-...
T Consensus 49 ~~l~sg~~D-g~v~iw--------------d~~~~~~~~~~~~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~ 112 (343)
T 3lrv_A 49 WVCMCRCED-GALHFT--------------QLKDSKTITTITTPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSK 112 (343)
T ss_dssp EEEEEEEET-TEEEEE--------------EESSSSCEEEEEEECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETT
T ss_pred CEEEEECCC-CcEEEE--------------ECCCCcEEEEEecCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecC
Q ss_pred CCCcccceeeecccCCcEEEEEe--CCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCc
Q 013457 161 TEDSLVPQKLQAFEGVSIKMVAA--GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWR 238 (442)
Q Consensus 161 ~~~~~~p~~v~~~~~~~i~~ia~--G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~ 238 (442)
............-....-..... .....+.-..||.|..| +.................|..++....
T Consensus 113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~w-----------d~~~~~~~~~~~~~~~~~i~~~~~~pd 181 (343)
T 3lrv_A 113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQ-----------SYEDDSQYIVHSAKSDVEYSSGVLHKD 181 (343)
T ss_dssp TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEE-----------ESSSSCEEEEECCCSSCCCCEEEECTT
T ss_pred CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEE-----------ECCCCcEEEEEecCCCCceEEEEECCC
Q ss_pred eEEEEe--CCCCEEEEeCCCCCcCCCCCCCCccce-eEecccCCCcEEEEEcC-CCceEEEeCCCcEEEeecCCCccccc
Q 013457 239 HTISVS--SSGRLYSYGWSKYGQLGHGDFKDHLVP-CQLEALRESFISQISGG-WRHTMAVTSDGKLYGWGWNKFGQVGV 314 (442)
Q Consensus 239 ~s~~lt--~~G~vy~~G~n~~gqlG~~~~~~~~~p-~~v~~~~~~~i~~I~~G-~~hs~~lt~~G~vy~wG~n~~GqLG~ 314 (442)
..++.+ .+|.|..| +....... ..+..-....|..|+.. ....++...++.|..|-......+
T Consensus 182 g~~lasg~~dg~i~iw-----------d~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~-- 248 (343)
T 3lrv_A 182 SLLLALYSPDGILDVY-----------NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGT-- 248 (343)
T ss_dssp SCEEEEECTTSCEEEE-----------ESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTC--
T ss_pred CCEEEEEcCCCEEEEE-----------ECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcc--
Q ss_pred CCCCCcccceEeccCCCcEEecCceEEEEE--c-CCCEEEE
Q 013457 315 GDNVDHCSPVQVKFPLDQISCGWRHTLAVT--E-RQNVFSW 352 (442)
Q Consensus 315 g~~~~~~~p~~v~~~~~~i~~G~~h~~alt--~-~g~v~~w 352 (442)
.................++......++++ . ++.+..|
T Consensus 249 -~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~ 288 (343)
T 3lrv_A 249 -LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIY 288 (343)
T ss_dssp -BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred -eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEE
No 96
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=36.47 E-value=2.2e+02 Score=24.99 Aligned_cols=165 Identities=15% Similarity=0.164 Sum_probs=79.4
Q ss_pred CCcEEEEEeC-CceEEEEEcCCe-EEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEecCCcE-EE
Q 013457 123 SLRVKQIACG-DSHCLAVTVEGE-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGEL-YG 199 (442)
Q Consensus 123 ~~~i~~Ia~G-~~h~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~v-y~ 199 (442)
+-++.-..++ ....++++.+|+ ++.|+.... + ......|..+....+-++.-.........+++.+|++ |.
T Consensus 87 dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~ 160 (276)
T 3no2_A 87 DGNALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNS 160 (276)
T ss_dssp TSCEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred CCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEE
Confidence 3355544555 556667777887 466654211 0 0111122222233333454344445566677766763 44
Q ss_pred EeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceEEEEeCC-CC-EEEEeCCCCCcCCCCCCCCccceeEeccc
Q 013457 200 WGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSS-GR-LYSYGWSKYGQLGHGDFKDHLVPCQLEAL 277 (442)
Q Consensus 200 wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~-G~-vy~~G~n~~gqlG~~~~~~~~~p~~v~~~ 277 (442)
++.. ..|.-+..+.+..+.-........++++.+ |+ +|.++.+.... .....|.-+..+
T Consensus 161 ~~~~-------------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~------~~l~~~~~~~~~ 221 (276)
T 3no2_A 161 VKLS-------------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG------VQLFFVAQLFPL 221 (276)
T ss_dssp EECS-------------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS------CCCSEEEEEEEC
T ss_pred EECC-------------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC------ccccccccceEc
Confidence 4431 012223334444444333333456677777 76 67776432110 011234444444
Q ss_pred CCCcEEEEEc--C---------CCceEEEeCCCcEEEeecCCCccccc
Q 013457 278 RESFISQISG--G---------WRHTMAVTSDGKLYGWGWNKFGQVGV 314 (442)
Q Consensus 278 ~~~~i~~I~~--G---------~~hs~~lt~~G~vy~wG~n~~GqLG~ 314 (442)
.+-.+. |+. | ....+.++.+|++ .|-.+.....|.
T Consensus 222 ~~G~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 222 QNGGLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp TTSCEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCC
T ss_pred CCCCEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCcccccc
Confidence 443333 332 2 3357888888887 666666555543
No 97
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=36.24 E-value=2.3e+02 Score=25.16 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=12.1
Q ss_pred ceEEEEEcCCeEEEEeC
Q 013457 134 SHCLAVTVEGEVQSWGR 150 (442)
Q Consensus 134 ~h~~~lt~~G~vy~wG~ 150 (442)
.|++++ .+++||.+|-
T Consensus 151 ~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 151 GHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp SCEEEE-ETTEEEEECC
T ss_pred ccEEEE-ECCEEEEEcC
Confidence 566655 5889999984
No 98
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=35.49 E-value=2.5e+02 Score=25.33 Aligned_cols=250 Identities=8% Similarity=-0.009 Sum_probs=117.2
Q ss_pred CCCCEEEEEec---CCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCC-----eeEEEEc
Q 013457 17 PFRPVLLISAG---ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD-----HTTAYSE 88 (442)
Q Consensus 17 ~~~~i~~is~G---~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~-----~~~~l~~ 88 (442)
....|..++.- ....+....||.|..|-.... .+....... ..+..+..... ..++-..
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 164 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL------------QTADVFNFE-ETVYSHHMSPVSTKHCLVAVGTR 164 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT------------EEEEEEECS-SCEEEEEECSSCSSCCEEEEEES
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC------------ccceeccCC-CceeeeEeecCCCCCcEEEEEcC
Confidence 45577777764 334455557999999964331 111111111 23444443321 3444455
Q ss_pred cCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCc---eEEEEEcCCeEEEEeCCCCCCc-CCCC---C
Q 013457 89 SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS---HCLAVTVEGEVQSWGRNQNGQL-GLGT---T 161 (442)
Q Consensus 89 ~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~---h~~~lt~~G~vy~wG~n~~gql-G~~~---~ 161 (442)
+ |.|+.|-...... ...+. .....|..++.... ..+.-..||.|+.|-....... -.-. .
T Consensus 165 ~-~~v~~~d~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 231 (408)
T 4a11_B 165 G-PKVQLCDLKSGSC-----------SHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231 (408)
T ss_dssp S-SSEEEEESSSSCC-----------CEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred C-CeEEEEeCCCcce-----------eeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc
Confidence 5 9999996432111 11111 12336777766533 2456678899999975432211 0000 0
Q ss_pred CCcccceeeecccCCcEEEEEeCC--CeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCce
Q 013457 162 EDSLVPQKLQAFEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRH 239 (442)
Q Consensus 162 ~~~~~p~~v~~~~~~~i~~ia~G~--~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~ 239 (442)
................|..++... .+.+....+|.|+.|-......+-....... ........+.........
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 306 (408)
T 4a11_B 232 KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC-----NNSKKGLKFTVSCGCSSE 306 (408)
T ss_dssp CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC-----CCCSSCCCCEECCSSSSC
T ss_pred ccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc-----ccccccceeEEecCCCce
Confidence 000000000011223577776644 3566667899999997544222111000000 000001111111222344
Q ss_pred EEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCC--CceEEEeCCCcEEEeecCCC
Q 013457 240 TISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW--RHTMAVTSDGKLYGWGWNKF 309 (442)
Q Consensus 240 s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~--~hs~~lt~~G~vy~wG~n~~ 309 (442)
.++...++.|+.|-...... ...+.. ....|..++... .+.+.-..||.|+.|-....
T Consensus 307 ~~~~~~~~~i~v~d~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 307 FVFVPYGSTIAVYTVYSGEQ-----------ITMLKG-HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp EEEEEETTEEEEEETTTCCE-----------EEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred EEEEecCCEEEEEECcCCcc-----------eeeecc-CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 55556788888886432111 111111 122366655543 33444567999999976554
No 99
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=34.32 E-value=2.5e+02 Score=24.92 Aligned_cols=202 Identities=12% Similarity=0.028 Sum_probs=0.0
Q ss_pred ccCCeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCC-----cEEEEEeCCceEEEEEcCCeEEEEeCCC
Q 013457 78 CGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSL-----RVKQIACGDSHCLAVTVEGEVQSWGRNQ 152 (442)
Q Consensus 78 ~G~~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~-----~i~~Ia~G~~h~~~lt~~G~vy~wG~n~ 152 (442)
....+..+...+ +.||++| |...............+..+... ++..+-....+..+..-+++||.+|-..
T Consensus 34 ~~r~~~~~~~~~-~~iyv~G----G~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~ 108 (315)
T 4asc_A 34 VPKNHVSLVTKE-NQVFVAG----GLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGRE 108 (315)
T ss_dssp SCSSEEEEECTT-CCEEEEE----EEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEE
T ss_pred CCccceEEEEEC-CEEEEEc----CcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCc
Q ss_pred CCCcCCCCCCCcccceeeecccCCcEEEEE---eCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCce
Q 013457 153 NGQLGLGTTEDSLVPQKLQAFEGVSIKMVA---AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREK 229 (442)
Q Consensus 153 ~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia---~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~ 229 (442)
.. .......-..+-.+.....+.+. ....+..+..-+++||++| |.........-..+-.+...+
T Consensus 109 ~~-----~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G-------G~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 109 IK-----DGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIG-------GKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp SS-----TTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEC-------CBCTTSCBCCCEEEEETTTTE
T ss_pred CC-----CCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEe-------CCCCCCcccceEEEEeCCCCe
Q ss_pred EEEEE----ecCceEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEE---cCCCceEEEeCCCcEE
Q 013457 230 MVMVA----CGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQIS---GGWRHTMAVTSDGKLY 302 (442)
Q Consensus 230 i~~I~----~G~~~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~---~G~~hs~~lt~~G~vy 302 (442)
-..+. .-..|++++. ++++|.+|-..... ...-..+-.+.....+.+. .......+..-+++||
T Consensus 177 W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~--------~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~ 247 (315)
T 4asc_A 177 WKELAPMQTARSLFGATVH-DGRIIVAAGVTDTG--------LTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLY 247 (315)
T ss_dssp EEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSS--------EEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEE
T ss_pred EEECCCCCCchhceEEEEE-CCEEEEEeccCCCC--------ccceEEEEECCCCeEEECCCCCCcccceeEEEECCEEE
Q ss_pred Eee
Q 013457 303 GWG 305 (442)
Q Consensus 303 ~wG 305 (442)
+.|
T Consensus 248 v~G 250 (315)
T 4asc_A 248 AIG 250 (315)
T ss_dssp EEE
T ss_pred EEC
No 100
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=33.92 E-value=3.1e+02 Score=25.88 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=33.0
Q ss_pred eCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEE---EEEecCceEEEEeCCCCEEEEe
Q 013457 183 AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMV---MVACGWRHTISVSSSGRLYSYG 253 (442)
Q Consensus 183 ~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~---~I~~G~~~s~~lt~~G~vy~~G 253 (442)
.|..-.++++.||++........+.+.. .. . ++.......+. .......+.++++.+|+||..-
T Consensus 187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~-----~~-~-~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d 253 (386)
T 3sjl_D 187 TAPDTFFMHCRDGSLAKVAFGTEGTPEI-----TH-T-EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID 253 (386)
T ss_dssp EETTEEEEEETTSCEEEEECCSSSCCEE-----EE-C-CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEE
T ss_pred CCCceeEEECCCCCEEEEECCCCCeEEE-----ee-c-ceeccccccccccceeEcCCCcEEEEeCCCEEEEEE
Confidence 3555566888999988887654444310 00 0 11111111110 1112234567788889999874
No 101
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=33.82 E-value=1.8e+02 Score=23.18 Aligned_cols=107 Identities=14% Similarity=0.184 Sum_probs=60.8
Q ss_pred cCCcEEEEEeCC-CeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEec-CceEEEEeCCCCEEE
Q 013457 174 EGVSIKMVAAGA-EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACG-WRHTISVSSSGRLYS 251 (442)
Q Consensus 174 ~~~~i~~ia~G~-~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G-~~~s~~lt~~G~vy~ 251 (442)
+.....++.|-. .+.+-+..||+|-.-.... +...--.+.... ..++.|.|- ..+.+++..+|+||.
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~----------~~~s~lei~sv~-~G~V~L~g~~sg~yL~mn~~G~l~G 96 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRDRS----------DTHIQFQISPEG-NGEVLLKSTETGQYLRINPDGTVDG 96 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECCTT----------CGGGCEEEEEEE-TTEEEEEETTTTEEEEECTTSBEEE
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecCCC----------CCceEEEEEEcc-CCEEEEEEecCCEEEeECCCCCEee
Confidence 345678898876 6677888899998654311 111111222222 246778775 467889999999997
Q ss_pred EeCCCCCcCCCCCCCCccceeEecccC--CCcEEEEEcCCCceEEEeCCCcEEE
Q 013457 252 YGWSKYGQLGHGDFKDHLVPCQLEALR--ESFISQISGGWRHTMAVTSDGKLYG 303 (442)
Q Consensus 252 ~G~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~I~~G~~hs~~lt~~G~vy~ 303 (442)
--. ..+.....++.... ...|+.+.. ...+++.++|++|.
T Consensus 97 s~~----------~t~ecsflEi~~en~y~v~i~g~~s--g~YLamnk~Grlyg 138 (142)
T 3p6j_A 97 TRD----------RSDTHIQFQISPEGNGEVLLKSTET--GQYLRINPDGTVDG 138 (142)
T ss_dssp ECC----------TTCGGGCEEEEECSTTCEEEEETTT--CCEEEECTTSBEEE
T ss_pred ccc----------CCCCceEEEEEeecCcEEEEEEecC--CEEEEECCCcCCcc
Confidence 421 11122222222222 212333333 34888999999985
No 102
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=33.39 E-value=1.8e+02 Score=23.13 Aligned_cols=106 Identities=11% Similarity=0.166 Sum_probs=59.2
Q ss_pred CCcEEEEEeCC-ceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeC-CCeEEEEecCCcEEEE
Q 013457 123 SLRVKQIACGD-SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG-AEHSVAVAEDGELYGW 200 (442)
Q Consensus 123 ~~~i~~Ia~G~-~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G-~~h~~~Lt~~G~vy~w 200 (442)
....+++-|-. .+-+-+..||.|-.-.... +...--.+... ...++.|.|- ..+.+++..+|+||.-
T Consensus 29 ~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~----------~~~s~lei~sv-~~G~V~L~g~~sg~yL~mn~~G~l~Gs 97 (142)
T 3p6j_A 29 GNGEVLLKSTETGQYLRINPDGTVDGTRDRS----------DTHIQFQISPE-GNGEVLLKSTETGQYLRINPDGTVDGT 97 (142)
T ss_dssp STTCEEEEETTTCCEEEECTTSBEEEECCTT----------CGGGCEEEEEE-ETTEEEEEETTTTEEEEECTTSBEEEE
T ss_pred cCcEEEEEEeCCCEEEEECCCCCEeeecCCC----------CCceEEEEEEc-cCCEEEEEEecCCEEEeECCCCCEeec
Confidence 44678888865 5667788899997543211 11111122221 1247788775 5778899999999964
Q ss_pred eCCCCCCcCCCCCCCeeeeeEeeeeCC--ceEEEEEecCceEEEEeCCCCEEE
Q 013457 201 GWGRYGNLGLGDRNDRLIPEKVATVDR--EKMVMVACGWRHTISVSSSGRLYS 251 (442)
Q Consensus 201 G~n~~GqlG~~~~~~~~~p~~v~~~~~--~~i~~I~~G~~~s~~lt~~G~vy~ 251 (442)
-.. ...-...++..... .-|..+..| ..++++++|++|.
T Consensus 98 ~~~----------t~ecsflEi~~en~y~v~i~g~~sg--~YLamnk~Grlyg 138 (142)
T 3p6j_A 98 RDR----------SDTHIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDG 138 (142)
T ss_dssp CCT----------TCGGGCEEEEECSTTCEEEEETTTC--CEEEECTTSBEEE
T ss_pred ccC----------CCCceEEEEEeecCcEEEEEEecCC--EEEEECCCcCCcc
Confidence 221 11111222222222 222333333 4889999999996
No 103
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=32.58 E-value=2.5e+02 Score=24.52 Aligned_cols=18 Identities=6% Similarity=-0.178 Sum_probs=12.5
Q ss_pred CceEEEEEcCCeEEEEeCC
Q 013457 133 DSHCLAVTVEGEVQSWGRN 151 (442)
Q Consensus 133 ~~h~~~lt~~G~vy~wG~n 151 (442)
..|++++. +++||.+|-.
T Consensus 104 ~~~~~~~~-~~~lyv~GG~ 121 (301)
T 2vpj_A 104 GLAGATTL-GDMIYVSGGF 121 (301)
T ss_dssp BSCEEEEE-TTEEEEECCB
T ss_pred cceeEEEE-CCEEEEEccc
Confidence 45555554 7899999843
No 104
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=32.07 E-value=2.9e+02 Score=24.98 Aligned_cols=10 Identities=0% Similarity=-0.183 Sum_probs=6.7
Q ss_pred cCCeEEEEeC
Q 013457 141 VEGEVQSWGR 150 (442)
Q Consensus 141 ~~G~vy~wG~ 150 (442)
.++.|+.|-.
T Consensus 178 ~~~~v~~~d~ 187 (391)
T 1l0q_A 178 DSMSISVIDT 187 (391)
T ss_dssp TTTEEEEEET
T ss_pred CCCEEEEEEC
Confidence 4577888754
No 105
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=31.59 E-value=2.8e+02 Score=24.64 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=12.4
Q ss_pred CCeEEEEecCCcEEEEeC
Q 013457 185 AEHSVAVAEDGELYGWGW 202 (442)
Q Consensus 185 ~~h~~~Lt~~G~vy~wG~ 202 (442)
..|++++. +++||++|-
T Consensus 101 ~~~~~~~~-~~~iyv~GG 117 (318)
T 2woz_A 101 CLFGLGEV-DDKIYVVAG 117 (318)
T ss_dssp CSCEEEEE-TTEEEEEEE
T ss_pred cccceEEE-CCEEEEEcC
Confidence 35666665 789999984
No 106
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=29.84 E-value=2.7e+02 Score=23.93 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=10.7
Q ss_pred eEEEEecCCcEEEEeC
Q 013457 187 HSVAVAEDGELYGWGW 202 (442)
Q Consensus 187 h~~~Lt~~G~vy~wG~ 202 (442)
..++++.+|++|+...
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 4566777777777654
No 107
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=28.90 E-value=3.3e+02 Score=24.69 Aligned_cols=245 Identities=9% Similarity=0.000 Sum_probs=109.6
Q ss_pred CcEEEEEccCCe--eEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC---CceEEEEEcCCeE
Q 013457 71 HEIVSVTCGADH--TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEV 145 (442)
Q Consensus 71 ~~i~~i~~G~~~--~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G---~~h~~~lt~~G~v 145 (442)
..|..++...+. .+.-..+ |.|..|-...... ...+..........|..++.. ....+.-..||.|
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~d-g~v~vw~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDN-GSLELYSTNEANN--------AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEI 138 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESS-SCEEEECCSSTTS--------CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCE
T ss_pred CceEEEEECCCCCeEEEEccC-CeEEEeecccccc--------cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeE
Confidence 357777664433 3333456 9999995432100 000111111122356666654 3455556678999
Q ss_pred EEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCC---CeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEe
Q 013457 146 QSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKV 222 (442)
Q Consensus 146 y~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~---~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v 222 (442)
+.|-.......... ........... ....|..++... ...+.-..+|.|+.|-.... .....+
T Consensus 139 ~iwd~~~~~~~~~~--~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-----------~~~~~~ 204 (416)
T 2pm9_A 139 FIWDMNKCTESPSN--YTPLTPGQSMS-SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-----------KEVIHL 204 (416)
T ss_dssp EBCBTTTTSSCTTT--CCCBCCCCSCC-SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-----------EEEEEE
T ss_pred EEEECCCCcccccc--ccccccccccC-CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-----------CcceEE
Confidence 99965432200000 00000000010 112455555543 33444467899999964321 011111
Q ss_pred eeeC-----CceEEEEEecCc---eEEEEeCCC---CEEEEeCCCCCcCCCCCCCCccceeEecc-cCCCcEEEEEc---
Q 013457 223 ATVD-----REKMVMVACGWR---HTISVSSSG---RLYSYGWSKYGQLGHGDFKDHLVPCQLEA-LRESFISQISG--- 287 (442)
Q Consensus 223 ~~~~-----~~~i~~I~~G~~---~s~~lt~~G---~vy~~G~n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~I~~--- 287 (442)
.... ...|..++.... ..+.-..++ .|+.|-.....+ +..... -....|..++.
T Consensus 205 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-----------~~~~~~~~~~~~v~~~~~s~~ 273 (416)
T 2pm9_A 205 SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-----------PLQTLNQGHQKGILSLDWCHQ 273 (416)
T ss_dssp CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-----------CSBCCCSCCSSCEEEEEECSS
T ss_pred eccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-----------CcEEeecCccCceeEEEeCCC
Confidence 1110 234555554432 334445555 777775432111 111111 11233666665
Q ss_pred CCCceEEEeCCCcEEEeecCCCcccccCCCCCcccceEeccCCCcEEecC---ceEEEEEcCCCEEEEeCCCC
Q 013457 288 GWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGW---RHTLAVTERQNVFSWGRGTN 357 (442)
Q Consensus 288 G~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~i~~G~---~h~~alt~~g~v~~wG~n~~ 357 (442)
.....+.-..+|.|+.|-....-.+.. ...-......++... ...+....||.|..|--...
T Consensus 274 ~~~~l~s~~~dg~v~~wd~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 274 DEHLLLSSGRDNTVLLWNPESAEQLSQ--------FPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp CSSCEEEEESSSEEEEECSSSCCEEEE--------EECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CCCeEEEEeCCCCEEEeeCCCCcccee--------ecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 344555566789999996433211100 000011122444443 23333456788999976543
No 108
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=28.63 E-value=4e+02 Score=25.61 Aligned_cols=225 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred EEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCCeeEEEEccCCeEEEEecCCC
Q 013457 22 LLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDF 101 (442)
Q Consensus 22 ~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G~vy~wG~n~~ 101 (442)
+.++....+.+.-..||.|..| +............-....-..++....+.+.-..+ +.|+.|
T Consensus 350 ~~~s~~g~~l~~~~~dg~v~~~-----------~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d-~~v~~~----- 412 (577)
T 2ymu_A 350 VAFSPDGQTIASASDDKTVKLW-----------NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD-KTVKLW----- 412 (577)
T ss_dssp EEECTTSSEEEEEETTSEEEEE-----------ETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETT-SEEEEE-----
T ss_pred EEECCCCCEEEEEeCCCEEEEE-----------cCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCC-CEEEEE-----
Q ss_pred CccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEE
Q 013457 102 GRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV 181 (442)
Q Consensus 102 gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i 181 (442)
+.................-..++......+.-..|+.|..|-.+.. ...........|..+
T Consensus 413 ------~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~-------------~~~~~~~~~~~v~~~ 473 (577)
T 2ymu_A 413 ------NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ-------------LLQTLTGHSSSVRGV 473 (577)
T ss_dssp ------CTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC-------------EEEEEECCSSCEEEE
T ss_pred ------eCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC-------------EEEEEcCCCCCEEEE
Q ss_pred EeCCCeEEEEe--cCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEEEeCCCCCc
Q 013457 182 AAGAEHSVAVA--EDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQ 259 (442)
Q Consensus 182 a~G~~h~~~Lt--~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~~G~n~~gq 259 (442)
+...+..++++ .|+.|+.| +.................-+.++....+.+.-..+|.|+.|
T Consensus 474 ~~spd~~~las~~~d~~i~iw-----------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw------- 535 (577)
T 2ymu_A 474 AFSPDGQTIASASDDKTVKLW-----------NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW------- 535 (577)
T ss_dssp EECTTSCEEEEEETTSEEEEE-----------ETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE-------
T ss_pred EEcCCCCEEEEEeCCCEEEEE-----------cCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEE-------
Q ss_pred CCCCCCCCccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEe
Q 013457 260 LGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGW 304 (442)
Q Consensus 260 lG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~w 304 (442)
+......-+.........-..++.-..+.+.-..|+.|..|
T Consensus 536 ----d~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 536 ----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp ----CTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred ----eCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
No 109
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=28.02 E-value=5.1e+02 Score=26.56 Aligned_cols=17 Identities=0% Similarity=-0.089 Sum_probs=12.7
Q ss_pred eEEEEEcCCCEEEEeCC
Q 013457 339 HTLAVTERQNVFSWGRG 355 (442)
Q Consensus 339 h~~alt~~g~v~~wG~n 355 (442)
++++.+.+|++|.=|.+
T Consensus 631 ~~~~~~~~G~l~~g~~~ 647 (781)
T 3v9f_A 631 GCVTKDHNGLIYFGSIN 647 (781)
T ss_dssp EEEEECTTSCEEEEETT
T ss_pred CceEECCCCEEEEECCC
Confidence 46777888998887654
No 110
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=27.90 E-value=4.2e+02 Score=27.32 Aligned_cols=123 Identities=10% Similarity=0.089 Sum_probs=67.2
Q ss_pred EeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeC--CCeEEEEecCCcEEEEeCCCCCC
Q 013457 130 ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGN 207 (442)
Q Consensus 130 a~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~n~~Gq 207 (442)
+...++.+++|+.|++|..-...--. +...-......+..-++.+|+.+... ..+.++.|++|.+.-.-...+-.
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~lP~---~~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~ 587 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITLPS---ARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVA 587 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTSCC---CC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCC
T ss_pred ecCCCEEEEEecCCcEEEEEeeeccc---ccccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcc
Confidence 34466788999999999886543211 11111111222222346678887665 44678889999988765433211
Q ss_pred cCCCCCCCeeeeeEeeeeCCceEEEE---EecCceEEEEeCCCCEEEEeCCCCCcCC
Q 013457 208 LGLGDRNDRLIPEKVATVDREKMVMV---ACGWRHTISVSSSGRLYSYGWSKYGQLG 261 (442)
Q Consensus 208 lG~~~~~~~~~p~~v~~~~~~~i~~I---~~G~~~s~~lt~~G~vy~~G~n~~gqlG 261 (442)
.- ..--.-+..-++..++.+ ..+..+.++++++|++..|-.++--.+|
T Consensus 588 ~~------~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~g 638 (716)
T 1zvu_A 588 RN------RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 638 (716)
T ss_dssp CS------TTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCS
T ss_pred cC------ccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccC
Confidence 00 000001111122233222 2367788999999999998866543333
No 111
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=27.44 E-value=5.2e+02 Score=26.49 Aligned_cols=16 Identities=6% Similarity=0.235 Sum_probs=11.0
Q ss_pred eEEEEEcCCCEEEEeC
Q 013457 339 HTLAVTERQNVFSWGR 354 (442)
Q Consensus 339 h~~alt~~g~v~~wG~ 354 (442)
++++.+.+|.+|.-+.
T Consensus 586 ~~i~~d~~g~lW~~t~ 601 (781)
T 3v9f_A 586 RAISEDKNGNIWASTN 601 (781)
T ss_dssp CEEEECSSSCEEEECS
T ss_pred EEEEECCCCCEEEEcC
Confidence 4566777788877654
No 112
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=25.85 E-value=5.6e+02 Score=26.32 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=12.7
Q ss_pred eEEEEEcCCCEEEEeCC
Q 013457 339 HTLAVTERQNVFSWGRG 355 (442)
Q Consensus 339 h~~alt~~g~v~~wG~n 355 (442)
.+++.+.+|++|.=|.+
T Consensus 634 ~~~~~~~~G~l~~g~~~ 650 (795)
T 4a2l_A 634 ASYCRTSVGQMYFGGIN 650 (795)
T ss_dssp EEEEECTTSCEEEEETT
T ss_pred CceeECCCCeEEEecCC
Confidence 46677888998877754
No 113
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=25.83 E-value=3e+02 Score=23.19 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=10.8
Q ss_pred ceEEEeCCCcEEEeec
Q 013457 291 HTMAVTSDGKLYGWGW 306 (442)
Q Consensus 291 hs~~lt~~G~vy~wG~ 306 (442)
+.++++.+|++|+-..
T Consensus 237 ~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 237 LAVAVDSDRTVYVADR 252 (270)
T ss_dssp EEEEECTTCCEEEEEG
T ss_pred eeEEECCCCCEEEEEC
Confidence 4566777788877543
No 114
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=25.73 E-value=3.8e+02 Score=24.36 Aligned_cols=223 Identities=10% Similarity=-0.010 Sum_probs=106.9
Q ss_pred CceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCC--eeEEEEccCCeEEEEecCCCCccCC
Q 013457 29 SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGH 106 (442)
Q Consensus 29 ~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~--~~~~l~~~~G~vy~wG~n~~gqlG~ 106 (442)
...+.-..||.|.+|-... ..+......-...|..++...+ +.+.-..+ +.|+.|-......
T Consensus 110 ~~l~~~~~dg~i~iwd~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-~~i~iwd~~~~~~--- 173 (420)
T 3vl1_A 110 RRFILGTTEGDIKVLDSNF------------NLQREIDQAHVSEITKLKFFPSGEALISSSQD-MQLKIWSVKDGSN--- 173 (420)
T ss_dssp CEEEEEETTSCEEEECTTS------------CEEEEETTSSSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTCCC---
T ss_pred CEEEEEECCCCEEEEeCCC------------cceeeecccccCccEEEEECCCCCEEEEEeCC-CeEEEEeCCCCcC---
Confidence 3344445778888884321 1112221112245777776533 44444556 9999996532211
Q ss_pred CCCCCceeeEEecccCCCcEEEEEeC--CceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeec--ccCCcEEEEE
Q 013457 107 GNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA--FEGVSIKMVA 182 (442)
Q Consensus 107 ~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~--~~~~~i~~ia 182 (442)
...+.. ....|..++.. ....+.-..||.|..|-......+. .+.. .....|..++
T Consensus 174 --------~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-----------~~~~~~~~~~~v~~~~ 233 (420)
T 3vl1_A 174 --------PRTLIG-HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH-----------TFNRKENPHDGVNSIA 233 (420)
T ss_dssp --------CEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE-----------EECBTTBTTCCEEEEE
T ss_pred --------ceEEcC-CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE-----------EeecCCCCCCCccEEE
Confidence 111111 22356666654 3455566778999999643311110 0000 0011122222
Q ss_pred e-----------------------CCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCc-
Q 013457 183 A-----------------------GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWR- 238 (442)
Q Consensus 183 ~-----------------------G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~- 238 (442)
. ...+.+.-..+|.|+.|-.... ..+..+.......|..++....
T Consensus 234 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~ 302 (420)
T 3vl1_A 234 LFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK-----------EQTIQLPSKFTCSCNSLTVDGNN 302 (420)
T ss_dssp EEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC-----------CEEEEECCTTSSCEEEEEECSSC
T ss_pred EecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC-----------ceeEEcccccCCCceeEEEeCCC
Confidence 1 1234455567888888854221 1111121112235666665433
Q ss_pred --eEEEEeCCCCEEEEeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCCceEE-EeCCCcEEEeecCC
Q 013457 239 --HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMA-VTSDGKLYGWGWNK 308 (442)
Q Consensus 239 --~s~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~hs~~-lt~~G~vy~wG~n~ 308 (442)
..+.-..+|.|+.|=.....+ ....+..-....|..+.......++ -..||.|..|-...
T Consensus 303 ~~~l~~g~~dg~i~vwd~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 303 ANYIYAGYENGMLAQWDLRSPEC----------PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp TTEEEEEETTSEEEEEETTCTTS----------CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred CCEEEEEeCCCeEEEEEcCCCcC----------chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 555667889999996432211 0111221123335555554444333 34688999997544
No 115
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=21.78 E-value=4e+02 Score=23.26 Aligned_cols=129 Identities=10% Similarity=0.090 Sum_probs=70.8
Q ss_pred CCcEEEE--EeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeC--CCeEEEEecCCcEE
Q 013457 123 SLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELY 198 (442)
Q Consensus 123 ~~~i~~I--a~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G--~~h~~~Lt~~G~vy 198 (442)
+..+..+ +...++.+++|+.|++|.+-....-.. ...-......+..-++..|+.+... ..+.+++|++|.+.
T Consensus 32 ~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~---r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~K 108 (256)
T 1zvt_A 32 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA---RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGF 108 (256)
T ss_dssp TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCS---SSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCc---CCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEE
Confidence 3344443 455778999999999999875442111 1111111112333346678887663 44578899999888
Q ss_pred EEeCCCCCCcCCCCCCCeeeeeEeeee-CCceEEEE--E-ecCceEEEEeCCCCEEEEeCCCCCcCC
Q 013457 199 GWGWGRYGNLGLGDRNDRLIPEKVATV-DREKMVMV--A-CGWRHTISVSSSGRLYSYGWSKYGQLG 261 (442)
Q Consensus 199 ~wG~n~~GqlG~~~~~~~~~p~~v~~~-~~~~i~~I--~-~G~~~s~~lt~~G~vy~~G~n~~gqlG 261 (442)
-.-..++-..... -..+..+ ++..++.+ . .+..+.++++++|.+..+--++.-.+|
T Consensus 109 r~~~~e~~~~~r~-------G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~g 168 (256)
T 1zvt_A 109 VCTFNDLVARNRA-------GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 168 (256)
T ss_dssp EEEGGGGCCCSTT-------CEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCS
T ss_pred EeEHHHhcccCcC-------ceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcC
Confidence 7765443111000 0011111 12233322 2 256788899999999888766544444
No 116
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=21.00 E-value=3e+02 Score=21.45 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=52.8
Q ss_pred EEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEe-cCceEEEEeCCCCEEEEeCCC
Q 013457 178 IKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVAC-GWRHTISVSSSGRLYSYGWSK 256 (442)
Q Consensus 178 i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~-G~~~s~~lt~~G~vy~~G~n~ 256 (442)
+.--.|...+-+-+..||+|-.-.+. .+...--++..... .++.|.. -..+.+++..+|+||.--.
T Consensus 8 ~~~~~~~~g~~L~I~~dG~V~Gt~~~----------~~~~s~l~~~~v~~-G~V~I~g~~sg~yL~m~~~G~v~Gs~~-- 74 (132)
T 3q7x_A 8 VLLRSTETGQFLRINPDGTVDGTRDR----------SDPGIQFQISPEGN-GEVLLRSTETGQFLRINPDGTVDGTRD-- 74 (132)
T ss_dssp EEEEETTTCCEEEECTTSBEEEECCT----------TCGGGCEEEEEEET-TEEEEEETTTCCEEEECTTSBEEEECC--
T ss_pred heeeeccCcEEEEECCCCcEEeecCC----------CCCCcEEEEEeccc-CEEEEEEEcccEEEEECCCCCEeeccC--
Confidence 44445666777888889999866431 11111112222221 2444432 3446788899999997422
Q ss_pred CCcCCCCCCCCccceeEecccCCCcEEEE-EcCCCceEEEeCCCcEEE
Q 013457 257 YGQLGHGDFKDHLVPCQLEALRESFISQI-SGGWRHTMAVTSDGKLYG 303 (442)
Q Consensus 257 ~gqlG~~~~~~~~~p~~v~~~~~~~i~~I-~~G~~hs~~lt~~G~vy~ 303 (442)
..+......+...... ...| ..-....+++..+|++|.
T Consensus 75 --------~s~ec~flE~~~~~~g-~v~ikg~~sg~YLamnk~G~lyg 113 (132)
T 3q7x_A 75 --------RSDPGIQFQISPEGNG-EVLLRSTETGQFLRINPDGTVDG 113 (132)
T ss_dssp ---------CCGGGCEEEEEEETT-EEEEEETTTCCEEEECTTSBEEE
T ss_pred --------CCCCceeEEEEeecCc-EEEEEeccCCeEEEECCCCcCcC
Confidence 1111111111111111 2222 223345888999999986
No 117
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=20.91 E-value=4.8e+02 Score=23.77 Aligned_cols=164 Identities=14% Similarity=0.047 Sum_probs=70.9
Q ss_pred cEEEEEccC--CeeEEEEccCCeEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeC---CceEEEEEcCCeEE
Q 013457 72 EIVSVTCGA--DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQ 146 (442)
Q Consensus 72 ~i~~i~~G~--~~~~~l~~~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G---~~h~~~lt~~G~vy 146 (442)
.|..++... .+.+.-..| +.|..|-.... + ....+.. ...+..++.. ....+.-..||.|.
T Consensus 167 ~v~~~~~~p~~~~l~s~s~d-~~v~iwd~~~~-~----------~~~~~~~--~~~v~~~~~~~~~~~~l~~~s~d~~v~ 232 (393)
T 1erj_A 167 DIYSLDYFPSGDKLVSGSGD-RTVRIWDLRTG-Q----------CSLTLSI--EDGVTTVAVSPGDGKYIAAGSLDRAVR 232 (393)
T ss_dssp CEEEEEECTTSSEEEEEETT-SEEEEEETTTT-E----------EEEEEEC--SSCEEEEEECSTTCCEEEEEETTSCEE
T ss_pred CEEEEEEcCCCCEEEEecCC-CcEEEEECCCC-e----------eEEEEEc--CCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence 566666543 334444556 99999943221 1 1111111 2245555543 23455566789999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeeecccCCcEEEEEeCC--CeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeee
Q 013457 147 SWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVAT 224 (442)
Q Consensus 147 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~--~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~ 224 (442)
.|-......+..- ..+.....-....|..++... .+.+.-..||.|..|-.......................
T Consensus 233 iwd~~~~~~~~~~-----~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~ 307 (393)
T 1erj_A 233 VWDSETGFLVERL-----DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 307 (393)
T ss_dssp EEETTTCCEEEEE-----C------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEE
T ss_pred EEECCCCcEEEee-----cccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEe
Confidence 9964321100000 000000000122466666543 344455578999999643321111000000000000001
Q ss_pred eCCceEEEEEecC--ceEEEEeCCCCEEEEeC
Q 013457 225 VDREKMVMVACGW--RHTISVSSSGRLYSYGW 254 (442)
Q Consensus 225 ~~~~~i~~I~~G~--~~s~~lt~~G~vy~~G~ 254 (442)
-....|..++... .+.+.-..+|.|+.|-.
T Consensus 308 ~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 308 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp CCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred cccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 1123455555543 34445567888999863
No 118
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=20.61 E-value=4.3e+02 Score=23.06 Aligned_cols=16 Identities=13% Similarity=0.410 Sum_probs=11.8
Q ss_pred CeEEEEecCCcEEEEeC
Q 013457 186 EHSVAVAEDGELYGWGW 202 (442)
Q Consensus 186 ~h~~~Lt~~G~vy~wG~ 202 (442)
.|++++. +++||++|-
T Consensus 193 ~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 193 NHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred cceEEEE-CCEEEEEeC
Confidence 5666655 789999983
Done!