BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013458
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
Length = 861
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/404 (50%), Positives = 251/404 (62%), Gaps = 25/404 (6%)
Query: 1 MINKKMFNGGRVEVWTCVNFS-TRLNRDVPFQ-FCQGLVDMCNSKGMVFNPRPVIPISSS 58
M NK+ G ++VW F+ R +V + F + L + GM +P +
Sbjct: 439 MRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQ 498
Query: 59 NPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQA 118
+ +E + N A LQ++++ILP + Y +KRV +T LG+ +QC Q +
Sbjct: 499 GADSVEPMFRHLKNTYAG----LQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNV 554
Query: 119 SRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSP 178
R Q N+ LKINVK+GG N +L+ Q R P V +P I GADVTHP G+ P
Sbjct: 555 QRTTPQTLSNLCLKINVKLGGVNNILLP--QGRPP-VFQQPVIFLGADVTHPPAGDGKKP 611
Query: 179 SIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRR 238
SIAAVV SMD +Y V Q H +EIIQDL M+RELLI F +
Sbjct: 612 SIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYK 657
Query: 239 STNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRL 298
ST FKP RIIFYRDGVSEGQF QVL HE+ AIR+AC LE+ Y P +TF+VVQKRHHTRL
Sbjct: 658 STRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRL 717
Query: 299 FPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENR 358
F D N R +SGNI GT DT I HPTEFDFYL SHAGIQGTSRP+HYHVL+D+NR
Sbjct: 718 FCTDKNER--VGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNR 775
Query: 359 FSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYI 402
FS+D+ Q+LT LC+TY RCTRSVSI PAYYAHL AFRARY++
Sbjct: 776 FSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHL 819
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
Length = 859
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/404 (50%), Positives = 251/404 (62%), Gaps = 25/404 (6%)
Query: 1 MINKKMFNGGRVEVWTCVNFS-TRLNRDVPFQ-FCQGLVDMCNSKGMVFNPRPVIPISSS 58
M NK+ G ++VW F+ R +V + F + L + GM +P +
Sbjct: 437 MRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQ 496
Query: 59 NPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQA 118
+ +E + N A LQ++++ILP + Y +KRV +T LG+ +QC Q +
Sbjct: 497 GADSVEPMFRHLKNTYAG----LQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNV 552
Query: 119 SRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSP 178
R Q N+ LKINVK+GG N +L+ Q R P V +P I GADVTHP G+ P
Sbjct: 553 QRTTPQTLSNLCLKINVKLGGVNNILLP--QGRPP-VFQQPVIFLGADVTHPPAGDGKKP 609
Query: 179 SIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRR 238
SIAAVV SMD +Y V Q H +EIIQDL M+RELLI F +
Sbjct: 610 SIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYK 655
Query: 239 STNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRL 298
ST FKP RIIFYRDGVSEGQF QVL HE+ AIR+AC LE+ Y P +TF+VVQKRHHTRL
Sbjct: 656 STRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRL 715
Query: 299 FPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENR 358
F D N R +SGNI GT DT I HPTEFDFYL SHAGIQGTSRP+HYHVL+D+NR
Sbjct: 716 FCTDKNER--VGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNR 773
Query: 359 FSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYI 402
FS+D+ Q+LT LC+TY RCTRSVSI PAYYAHL AFRARY++
Sbjct: 774 FSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHL 817
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain
pdb|4G0O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain
Length = 139
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 92/142 (64%), Positives = 112/142 (78%), Gaps = 4/142 (2%)
Query: 3 NKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQ 62
+KKM NG +V WTCV+FSTR++R +P +FC+ L+ MC SKGM F P+P IP S P
Sbjct: 2 DKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEH 61
Query: 63 IEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLN 122
IE+AL+D+H R LQ+LI+ILPDV+GSYG+IKR+CETELGIVSQCCQPRQ ++LN
Sbjct: 62 IEEALLDIHKRAPG----LQLLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNKLN 117
Query: 123 MQYFENVALKINVKVGGRNTVL 144
QY ENVALKINVK GGRNTVL
Sbjct: 118 KQYMENVALKINVKTGGRNTVL 139
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 437
Score = 191 bits (485), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 129/408 (31%), Positives = 203/408 (49%), Gaps = 39/408 (9%)
Query: 11 RVEVWTCVNF-STRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVD 69
++E WT + ++ N VP Q + N G+ NPR +S S P ++
Sbjct: 13 KIEKWTYLELKGSKANEGVP-QAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEFFAK 71
Query: 70 VHNRTAQQGKQLQMLIIILP--DVSGSYGRIKRVCETELGIVSQCCQPRQ--ASRLNMQY 125
V + Q ++++LP DV+ Y +KR + G+ + CC + +++ + Y
Sbjct: 72 VKELMSSH----QFVVVLLPRKDVA-IYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGY 126
Query: 126 FENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHP---QPGED--SSPSI 180
F NV LK+N+K GG N ++ IPL+ T++ G DVTHP G+ S+PSI
Sbjct: 127 FANVGLKVNLKFGGTN----HNIKTPIPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSI 182
Query: 181 AAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRST 240
+V+++D + ++ +V H +E + + + + EL + +
Sbjct: 183 VGLVSTID-QHLGQWPAMVWNNPHGQESMTEQFTDKFKTRL---------ELWRSNPANN 232
Query: 241 NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASL-EEGYAPPVTFVVVQKRHHTRLF 299
P I+ +RDGVSEGQF V+ E+ +R AC + G P +T +V KRH TR F
Sbjct: 233 RSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFF 292
Query: 300 PADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDE--- 356
P D +S GTV D + + +DF+L +HA +QGT+R HY VL DE
Sbjct: 293 PTDPKHIHFKSKSPK--EGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFR 350
Query: 357 ---NRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYY 401
+AD + LT+++CY + R T++VSI PPAYYA L RAR +
Sbjct: 351 ADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIH 398
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With
A Guide Rna
pdb|4F1N|B Chain B, Crystal Structure Of Kluyveromyces Polysporus Argonaute With
A Guide Rna
Length = 1046
Score = 174 bits (441), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 117/368 (31%), Positives = 183/368 (49%), Gaps = 34/368 (9%)
Query: 92 SGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVL-VDAVQK 150
S Y R+K + + + G ++ C + ++QY NV +K+N+K+ G N L ++ +
Sbjct: 694 SAVYDRLKYITDLKFGALNSCVVWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIENNKL 753
Query: 151 RIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQ-AHHEEII 209
I ++ P ++ G+DVTH P +D + SIA++V S D + T++ G Q EEII
Sbjct: 754 LIDKESNLPILVLGSDVTH-YPEKDQN-SIASLVGSYD-DKFTQFPGDYMLQDGPGEEII 810
Query: 210 QDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFK-PHRIIFYRDGVSEGQFSQVLLHEMN 268
++ G ++ L +++ N K P +I+++RDGVS QFSQV+ E+
Sbjct: 811 TNV-------------GSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVK 857
Query: 269 AIRQAC----ASLEEG--YAPPVTFVVVQKRHHTRLFPADHNRRDLTDRS------GNIL 316
+I+++ L G Y PPVT + KR+ R P N ++ GN++
Sbjct: 858 SIKESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVM 917
Query: 317 PGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYA 376
PGTV D I FDF++ SH ++GT P HY LYDEN+ ++D Q + NNLCY +
Sbjct: 918 PGTVVDRGITSVAHFDFFIQSHQALKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFG 977
Query: 377 RCTRSVSIVPPAYYAHLAAFRARYYIXXXXXXXXXXXXXXXXXXXNLAIRP---LPVIKD 433
R T SV + P YYA L RA + + LP + D
Sbjct: 978 RSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPKEKGSKDQPTVSKNVLLPQVND 1037
Query: 434 NVKDVMFY 441
N+K VM+Y
Sbjct: 1038 NIKSVMYY 1045
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna
Binding By Arabidopsis Ago Mid Domains
Length = 154
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 82/148 (55%), Positives = 105/148 (70%), Gaps = 4/148 (2%)
Query: 2 INKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPN 61
+NKKM NGG V W C+NFS ++ ++ FCQ L MC GM FNP PV+P S+ P
Sbjct: 1 MNKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPE 60
Query: 62 QIEKAL-VDVHNRTAQ--QGKQLQMLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQ 117
Q+EK L H+ T++ QGK++ +LI+ILPD +GS YG +KR+CETELGIVSQCC +
Sbjct: 61 QVEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKH 120
Query: 118 ASRLNMQYFENVALKINVKVGGRNTVLV 145
+++ QY NVALKINVKVGGRNTVLV
Sbjct: 121 VFKMSKQYMANVALKINVKVGGRNTVLV 148
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Ump
pdb|4G0Q|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Cmp
pdb|4G0Y|A Chain A, Crystal Structure Of Arabidopsis Ago1 In Complex With Amp
pdb|4G0Z|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Gmp
Length = 147
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 103/146 (70%), Gaps = 4/146 (2%)
Query: 3 NKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQ 62
NKKM NGG V W C+NFS ++ ++ FCQ L MC GM FNP PV+P S+ P Q
Sbjct: 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQ 61
Query: 63 IEKAL-VDVHNRTAQ--QGKQLQMLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQA 118
+EK L H+ T++ QGK++ +LI+ILPD +GS YG +KR+CETELGIVSQCC +
Sbjct: 62 VEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHV 121
Query: 119 SRLNMQYFENVALKINVKVGGRNTVL 144
+++ QY NVALKINVKVGGRNTVL
Sbjct: 122 FKMSKQYMANVALKINVKVGGRNTVL 147
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna
Binding By Arabidopsis Ago Domains
Length = 155
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/149 (54%), Positives = 103/149 (69%), Gaps = 5/149 (3%)
Query: 2 INKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPN 61
+NKKM NGG V W C+NFS ++ ++ FCQ L MC GM FNP PV+P S+ P
Sbjct: 1 MNKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPE 60
Query: 62 QIEKAL-VDVHNRTAQ--QGKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR 116
Q+EK L H+ T++ QGK++ +LI+ILPD S YG +KR+CETELGIVSQCC +
Sbjct: 61 QVEKVLKTRYHDATSKLSQGKEIDLLIVILPDKKNSDLYGDLKRICETELGIVSQCCLTK 120
Query: 117 QASRLNMQYFENVALKINVKVGGRNTVLV 145
+++ QY NVALKINVKVGGRNTVLV
Sbjct: 121 HVFKMSKQYMANVALKINVKVGGRNTVLV 149
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
Length = 147
Score = 157 bits (398), Expect = 9e-39, Method: Composition-based stats.
Identities = 78/146 (53%), Positives = 99/146 (67%), Gaps = 4/146 (2%)
Query: 3 NKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQ 62
NKK NGG V W C+NFS ++ ++ FCQ L C G FNP PV+P S+ P Q
Sbjct: 2 NKKXINGGTVNNWICINFSRQVQDNLARTFCQELAQXCYVSGXAFNPEPVLPPVSARPEQ 61
Query: 63 IEKAL-VDVHNRTAQ--QGKQLQMLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQA 118
+EK L H+ T++ QGK++ +LI+ILPD +GS YG +KR+CETELGIVSQCC +
Sbjct: 62 VEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHV 121
Query: 119 SRLNMQYFENVALKINVKVGGRNTVL 144
+ + QY NVALKINVKVGGRNTVL
Sbjct: 122 FKXSKQYXANVALKINVKVGGRNTVL 147
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 388
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/402 (26%), Positives = 175/402 (43%), Gaps = 76/402 (18%)
Query: 11 RVEVWTCVNF-STRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVD 69
++E WT + ++ N VP Q + N G+ NPR +S S P ++
Sbjct: 13 KIEKWTYLELKGSKANEGVP-QAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEFFAK 71
Query: 70 VHNRTAQQGKQLQMLIIILP--DVSGSYGRIKRVCETELGIVSQCCQPRQ--ASRLNMQY 125
V + Q ++++LP DV+ Y +KR + G+ + CC + +++ + Y
Sbjct: 72 VKELMSSH----QFVVVLLPRKDVA-IYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGY 126
Query: 126 FENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHP---QPGED--SSPSI 180
F NV LK+N+K GG N ++ IPL+ T++ G DVTHP G+ S+PSI
Sbjct: 127 FANVGLKVNLKFGGTN----HNIKTPIPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSI 182
Query: 181 AAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRST 240
+V+++D + ++ +V H +E + + + + EL + +
Sbjct: 183 VGLVSTID-QHLGQWPAMVWNNPHGQESMTEQFTDKFKTRL---------ELWRSNPANN 232
Query: 241 NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASL-EEGYAPPVTFVVVQKRHHTRLF 299
P I+ +RDGVSEGQF V+ E+ +R AC + G P +T +V K + +
Sbjct: 233 RSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKGSGSAHY 292
Query: 300 PADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRF 359
+L +F D
Sbjct: 293 --------------TVLVDEIFRA-------------------------------DYGNK 307
Query: 360 SADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYY 401
+AD + LT+++CY + R T++VSI PPAYYA L RAR +
Sbjct: 308 AADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIH 349
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain
pdb|4G0M|B Chain B, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain
Length = 150
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 11/150 (7%)
Query: 4 KKMFNGGRVEVWTCVNF--STRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISS---- 57
K + G V+ W ++F S R N+ +P F L+D C GM P++ +S
Sbjct: 3 KGVTRGSIVKHWAVLDFTASERFNK-MPNDFVDNLIDRCWRLGMQMEA-PIVYKTSRMET 60
Query: 58 -SNPNQIEKALVDVHNRTAQQ--GKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQ 114
SN N IE+ L V + +++ G + +++ + Y +K + ET+LG+V+QC
Sbjct: 61 LSNGNAIEELLRSVIDEASRKHGGARPTLVLCAMSRKDDGYKTLKWIAETKLGLVTQCFL 120
Query: 115 PRQASRLNMQYFENVALKINVKVGGRNTVL 144
A++ QY N+ALK+N KVGG N L
Sbjct: 121 TGPATKGGDQYRANLALKMNAKVGGSNVEL 150
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2
pdb|3LUC|B Chain B, Crystal Structure Of Mid Domain From Hago2
pdb|3LUC|C Chain C, Crystal Structure Of Mid Domain From Hago2
pdb|3LUD|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUD|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUD|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUG|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUG|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUG|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUH|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUH|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUH|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUJ|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3LUJ|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3LUJ|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3QX8|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX8|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX8|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX9|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
pdb|3QX9|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
pdb|3QX9|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
Length = 138
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 6/141 (4%)
Query: 3 NKKMFNGGRVEVWTCVNFS-TRLNRDVPFQ-FCQGLVDMCNSKGMVFNPRPVIPISSSNP 60
NK+ G ++VW F+ R +V + F + L + GM +P +
Sbjct: 2 NKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGA 61
Query: 61 NQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASR 120
+ +E + N A LQ++++ILP + Y +KRV +T LG+ +QC Q + R
Sbjct: 62 DSVEPMFRHLKNTYAG----LQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQR 117
Query: 121 LNMQYFENVALKINVKVGGRN 141
Q N+ LKINVK+GG N
Sbjct: 118 TTPQTLSNLCLKINVKLGGVN 138
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2
pdb|3LUK|B Chain B, Crystal Structure Of Mid Domain From Hago2
pdb|3LUK|C Chain C, Crystal Structure Of Mid Domain From Hago2
Length = 138
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 6/141 (4%)
Query: 3 NKKMFNGGRVEVWTCVNFS-TRLNRDVPFQ-FCQGLVDMCNSKGMVFNPRPVIPISSSNP 60
NK+ G ++VW F+ R +V + F + L + G +P +
Sbjct: 2 NKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGXPIQGQPCFCKYAQGA 61
Query: 61 NQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASR 120
+ +E + N A LQ++++ILP + Y +KRV +T LG +QC Q + R
Sbjct: 62 DSVEPXFRHLKNTYAG----LQLVVVILPGKTPVYAEVKRVGDTVLGXATQCVQXKNVQR 117
Query: 121 LNMQYFENVALKINVKVGGRN 141
Q N+ LKINVK+GG N
Sbjct: 118 TTPQTLSNLCLKINVKLGGVN 138
>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain
Length = 145
Score = 55.8 bits (133), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 11/136 (8%)
Query: 11 RVEVWTCVNFS-TRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVD 69
++E WT + ++ N VP Q + N G+ NPR +S S P ++
Sbjct: 13 KIEKWTYLELKGSKANEGVP-QAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEFFAK 71
Query: 70 VHNRTAQQGKQLQMLIIILP--DVSGSYGRIKRVCETELGIVSQCCQPRQ--ASRLNMQY 125
V + Q ++++LP DV+ Y +KR + G+ + CC + +++ + Y
Sbjct: 72 VKELMSSH----QFVVVLLPRKDVA-IYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGY 126
Query: 126 FENVALKINVKVGGRN 141
F NV LK+N+K GG N
Sbjct: 127 FANVGLKVNLKFGGTN 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,631,671
Number of Sequences: 62578
Number of extensions: 497225
Number of successful extensions: 1405
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1358
Number of HSP's gapped (non-prelim): 16
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)