Query 013458
Match_columns 442
No_of_seqs 137 out of 1006
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:03:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 3.1E-95 7E-100 802.3 42.3 420 1-442 471-900 (900)
2 cd04657 Piwi_ago-like Piwi_ago 100.0 6.5E-93 1.4E-97 731.9 39.7 375 1-402 45-426 (426)
3 KOG1041 Translation initiation 100.0 6E-89 1.3E-93 746.6 40.5 421 1-442 452-876 (876)
4 cd04658 Piwi_piwi-like_Euk Piw 100.0 1.6E-85 3.4E-90 682.5 39.6 362 2-399 82-447 (448)
5 cd02826 Piwi-like Piwi-like: P 100.0 3.3E-84 7.2E-89 661.4 39.9 362 1-400 23-393 (393)
6 KOG1042 Germ-line stem cell di 100.0 9.5E-81 2.1E-85 628.2 29.5 365 2-405 462-833 (845)
7 PF02171 Piwi: Piwi domain; I 100.0 4.3E-75 9.3E-80 575.6 29.0 297 83-403 1-302 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 8.8E-49 1.9E-53 402.3 29.5 290 60-399 93-401 (404)
9 COG1431 Argonaute homolog, imp 99.6 5.9E-14 1.3E-18 142.8 19.7 304 26-401 355-669 (685)
10 PF13032 DUF3893: Domain of un 95.5 0.033 7.2E-07 48.6 6.0 57 344-404 66-122 (138)
11 PRK11617 endonuclease V; Provi 94.0 2.6 5.5E-05 39.9 14.8 48 345-402 170-217 (224)
12 cd06559 Endonuclease_V Endonuc 93.6 1.4 3.1E-05 41.2 12.5 42 345-396 166-207 (208)
13 PF08459 UvrC_HhH_N: UvrC Heli 91.5 1.4 3.1E-05 39.2 9.0 100 158-293 10-114 (155)
14 COG1515 Nfi Deoxyinosine 3'end 86.8 19 0.0004 33.7 12.8 36 356-398 176-211 (212)
15 TIGR00194 uvrC excinuclease AB 86.6 5 0.00011 43.4 10.5 113 160-302 382-498 (574)
16 PRK12306 uvrC excinuclease ABC 83.3 10 0.00022 40.5 10.9 112 158-302 365-477 (519)
17 PRK14670 uvrC excinuclease ABC 79.9 18 0.0004 39.1 11.4 115 158-301 357-472 (574)
18 PRK14672 uvrC excinuclease ABC 77.3 26 0.00056 38.6 11.5 109 158-302 453-565 (691)
19 PRK14667 uvrC excinuclease ABC 77.1 19 0.00041 39.0 10.5 107 158-301 360-471 (567)
20 PRK14671 uvrC excinuclease ABC 76.9 18 0.00038 39.7 10.3 107 158-301 414-525 (621)
21 PRK14669 uvrC excinuclease ABC 75.3 22 0.00049 38.9 10.5 113 158-302 395-508 (624)
22 PF00763 THF_DHG_CYH: Tetrahyd 72.9 22 0.00048 29.9 7.9 72 63-136 12-85 (117)
23 PRK00558 uvrC excinuclease ABC 71.5 32 0.00069 37.6 10.6 104 158-293 382-486 (598)
24 PRK14666 uvrC excinuclease ABC 70.4 51 0.0011 36.4 11.8 100 158-292 471-571 (694)
25 PF04493 Endonuclease_5: Endon 66.7 31 0.00067 32.3 8.1 32 358-395 175-206 (206)
26 PRK14166 bifunctional 5,10-met 63.1 44 0.00096 32.8 8.7 73 62-136 12-86 (282)
27 PRK14194 bifunctional 5,10-met 63.0 44 0.00096 33.1 8.8 73 61-135 14-88 (301)
28 PRK00766 hypothetical protein; 63.0 15 0.00032 34.1 5.1 35 357-398 152-186 (194)
29 PRK14169 bifunctional 5,10-met 62.6 47 0.001 32.6 8.8 73 62-136 12-86 (282)
30 PRK14192 bifunctional 5,10-met 62.3 58 0.0013 32.0 9.5 80 62-144 14-99 (283)
31 PRK14187 bifunctional 5,10-met 61.4 55 0.0012 32.4 9.1 73 62-136 13-88 (294)
32 PRK14183 bifunctional 5,10-met 61.2 51 0.0011 32.4 8.8 73 62-136 12-87 (281)
33 PRK14180 bifunctional 5,10-met 61.1 52 0.0011 32.3 8.8 73 62-136 12-87 (282)
34 PRK14193 bifunctional 5,10-met 61.0 51 0.0011 32.4 8.8 73 62-136 14-88 (284)
35 PRK14185 bifunctional 5,10-met 60.6 48 0.001 32.8 8.5 73 62-136 12-87 (293)
36 PRK14171 bifunctional 5,10-met 59.7 59 0.0013 32.1 8.9 73 62-136 13-88 (288)
37 PRK14182 bifunctional 5,10-met 59.4 54 0.0012 32.2 8.6 72 62-135 12-85 (282)
38 PRK14668 uvrC excinuclease ABC 59.1 85 0.0018 34.2 10.9 108 158-300 374-484 (577)
39 PRK14190 bifunctional 5,10-met 59.1 56 0.0012 32.1 8.7 73 62-136 14-88 (284)
40 PRK14170 bifunctional 5,10-met 58.9 58 0.0012 32.1 8.7 73 62-136 13-87 (284)
41 PRK14176 bifunctional 5,10-met 58.8 70 0.0015 31.5 9.3 74 61-136 18-94 (287)
42 PRK14167 bifunctional 5,10-met 56.6 68 0.0015 31.8 8.9 73 62-136 13-87 (297)
43 PRK14184 bifunctional 5,10-met 55.8 74 0.0016 31.3 8.9 72 62-135 12-86 (286)
44 PRK14174 bifunctional 5,10-met 55.6 69 0.0015 31.7 8.7 73 62-136 12-87 (295)
45 PRK14175 bifunctional 5,10-met 55.0 67 0.0015 31.6 8.5 72 62-135 14-87 (286)
46 PRK14188 bifunctional 5,10-met 54.9 76 0.0016 31.4 8.9 73 62-136 13-88 (296)
47 PRK14189 bifunctional 5,10-met 54.8 81 0.0018 31.0 9.0 72 62-135 14-87 (285)
48 PLN02516 methylenetetrahydrofo 54.3 82 0.0018 31.2 9.0 73 62-136 20-95 (299)
49 PRK10792 bifunctional 5,10-met 54.3 72 0.0016 31.4 8.6 73 62-136 14-89 (285)
50 PRK14186 bifunctional 5,10-met 53.4 79 0.0017 31.3 8.7 78 62-141 13-95 (297)
51 PLN02897 tetrahydrofolate dehy 53.0 80 0.0017 31.9 8.8 74 61-136 66-142 (345)
52 PRK14168 bifunctional 5,10-met 52.7 81 0.0018 31.2 8.7 73 62-136 14-89 (297)
53 PLN02616 tetrahydrofolate dehy 52.1 86 0.0019 31.9 8.9 73 61-135 83-158 (364)
54 PRK14172 bifunctional 5,10-met 50.0 1E+02 0.0022 30.2 8.8 74 61-136 12-88 (278)
55 PRK14177 bifunctional 5,10-met 49.9 1.1E+02 0.0023 30.2 9.0 79 61-141 13-96 (284)
56 PRK14179 bifunctional 5,10-met 48.4 1.2E+02 0.0025 30.0 9.0 73 62-136 13-88 (284)
57 PF02772 S-AdoMet_synt_M: S-ad 47.9 12 0.00025 31.9 1.7 31 373-403 12-42 (120)
58 PRK14191 bifunctional 5,10-met 47.0 1.2E+02 0.0025 30.0 8.7 73 62-136 12-87 (285)
59 PF09373 PMBR: Pseudomurein-bi 45.9 24 0.00051 22.7 2.5 23 226-249 11-33 (33)
60 COG0322 UvrC Nuclease subunit 45.1 1.8E+02 0.0039 31.7 10.6 107 158-300 378-486 (581)
61 PRK14178 bifunctional 5,10-met 42.0 1.5E+02 0.0033 29.1 8.6 57 78-136 24-82 (279)
62 PF13407 Peripla_BP_4: Peripla 42.0 1.1E+02 0.0024 28.4 7.8 81 25-116 9-89 (257)
63 COG0190 FolD 5,10-methylene-te 41.3 1.5E+02 0.0032 29.1 8.4 72 62-135 11-85 (283)
64 PRK14173 bifunctional 5,10-met 40.5 1.3E+02 0.0028 29.6 8.0 56 79-136 28-85 (287)
65 cd06334 PBP1_ABC_ligand_bindin 37.8 1.2E+02 0.0026 30.3 7.6 87 11-113 139-225 (351)
66 PRK14181 bifunctional 5,10-met 35.7 1.8E+02 0.0039 28.7 8.1 56 78-135 24-81 (287)
67 PRK12581 oxaloacetate decarbox 34.8 3.2E+02 0.007 28.9 10.3 96 29-135 103-203 (468)
68 cd01457 vWA_ORF176_type VWA OR 34.6 2.6E+02 0.0056 25.4 8.7 68 220-292 79-151 (199)
69 COG0192 MetK S-adenosylmethion 32.8 30 0.00065 34.8 2.1 33 371-403 125-157 (388)
70 PF01949 DUF99: Protein of unk 31.1 44 0.00096 30.7 2.9 37 354-397 144-180 (187)
71 cd06363 PBP1_Taste_receptor Li 30.1 1.5E+02 0.0033 30.3 7.0 9 269-277 344-352 (410)
72 PF10087 DUF2325: Uncharacteri 27.9 1.4E+02 0.0031 23.8 5.1 38 79-117 47-85 (97)
73 PRK14042 pyruvate carboxylase 27.9 3.8E+02 0.0082 29.4 9.7 106 29-145 94-203 (596)
74 cd06346 PBP1_ABC_ligand_bindin 26.2 1.7E+02 0.0036 28.4 6.3 15 231-245 258-272 (312)
75 PF01993 MTD: methylene-5,6,7, 25.3 3.2E+02 0.0069 26.3 7.4 54 59-118 43-97 (276)
76 cd06336 PBP1_ABC_ligand_bindin 25.1 3.1E+02 0.0067 27.0 8.1 89 11-114 137-225 (347)
77 PF00763 THF_DHG_CYH: Tetrahyd 25.0 4.1E+02 0.0088 22.1 8.1 68 14-91 31-98 (117)
78 PRK10355 xylF D-xylose transpo 23.5 5.6E+02 0.012 25.2 9.6 93 9-114 20-113 (330)
79 KOG3123 Diphthine synthase [Tr 23.4 1.3E+02 0.0027 28.3 4.3 37 78-116 129-166 (272)
80 cd06328 PBP1_SBP_like_2 Peripl 23.4 4E+02 0.0086 26.1 8.4 17 31-47 151-167 (333)
81 cd06327 PBP1_SBP_like_1 Peripl 23.1 2.5E+02 0.0055 27.4 7.0 64 12-88 135-198 (334)
82 cd05565 PTS_IIB_lactose PTS_II 22.8 1.6E+02 0.0034 24.1 4.4 69 30-117 14-82 (99)
83 cd06338 PBP1_ABC_ligand_bindin 22.8 2.6E+02 0.0056 27.4 7.0 86 12-113 141-226 (345)
84 PLN00039 photosystem II reacti 22.5 1.3E+02 0.0029 25.1 3.9 43 3-48 67-109 (111)
85 PRK14041 oxaloacetate decarbox 22.4 6.6E+02 0.014 26.6 10.0 61 226-286 266-337 (467)
86 TIGR03047 PS_II_psb28 photosys 22.4 1.2E+02 0.0027 25.2 3.7 43 3-48 66-108 (109)
87 cd06355 PBP1_FmdD_like Peripla 22.3 2.6E+02 0.0056 27.7 6.9 65 12-89 133-197 (348)
88 cd06349 PBP1_ABC_ligand_bindin 21.6 2.5E+02 0.0054 27.5 6.6 33 12-48 135-167 (340)
89 TIGR03407 urea_ABC_UrtA urea A 21.4 2.7E+02 0.0059 27.7 6.9 65 12-89 134-198 (359)
90 PF09469 Cobl: Cordon-bleu ubi 21.3 49 0.0011 25.8 1.0 20 241-260 8-27 (79)
91 CHL00128 psbW photosystem II p 20.9 1.4E+02 0.0031 25.0 3.7 43 3-48 69-111 (113)
92 cd01542 PBP1_TreR_like Ligand- 20.7 6.5E+02 0.014 23.0 9.3 77 24-115 9-86 (259)
93 PRK00994 F420-dependent methyl 20.6 2.7E+02 0.0058 26.8 5.9 49 59-117 44-97 (277)
94 cd06358 PBP1_NHase Type I peri 20.5 4.8E+02 0.01 25.4 8.3 66 12-90 132-197 (333)
95 PRK13612 photosystem II reacti 20.4 1.5E+02 0.0032 24.9 3.8 43 3-48 69-111 (113)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=3.1e-95 Score=802.27 Aligned_cols=420 Identities=42% Similarity=0.714 Sum_probs=353.8
Q ss_pred CCCCCcccCcccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCC------CChhHHHHHHHHHHHHH
Q 013458 1 MINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISS------SNPNQIEKALVDVHNRT 74 (442)
Q Consensus 1 m~~~~f~~~~~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~------~~~~~~~~~l~~~~~~~ 74 (442)
|++++|++|+++++|++++|++. ..++.|++.|.+.|+.+||.+..|+...... ...+.++..++.+.++.
T Consensus 471 ~~~~kf~~~~~l~~W~vv~~~~~---~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 547 (900)
T PLN03202 471 FNNKKLVEPTKIERWAVVNFSAR---CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKL 547 (900)
T ss_pred cCCCEecCCCccceEEEEEecCc---hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhc
Confidence 57889999999999999988643 3589999999999999999998764321111 11233455555444433
Q ss_pred hhcCCCceEEEEEeCCC-CCh-hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhhcCCeeeeeccccccCC
Q 013458 75 AQQGKQLQMLIIILPDV-SGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRI 152 (442)
Q Consensus 75 ~~~~~~~~~vlvilp~~-~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaKlGG~n~~l~~~~~~~~ 152 (442)
...++|+|||+|++ +.+ |+.||++|+.+.||+||||... +.++|++.||++|||+||||+||.+..+....+
T Consensus 548 ---~~~~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i 621 (900)
T PLN03202 548 ---PGPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSI 621 (900)
T ss_pred ---cCCCeEEEEEEcCCCCcchHHHHHHHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccC
Confidence 25799999999974 455 9999999999999999999654 347899999999999999999999875534457
Q ss_pred CccCCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccceeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHH
Q 013458 153 PLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIREL 232 (442)
Q Consensus 153 p~~~~~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~ 232 (442)
|++...+|||||+||+|++++....||+||+|||+|+..+++|++.++.|..++|++++|+....+ ..+++|+.++
T Consensus 622 ~~~~~~~tMivG~DVtHp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~~ 697 (900)
T PLN03202 622 PLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIREL 697 (900)
T ss_pred ccccCCCeEEEEEEeecCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHHH
Confidence 887778999999999999987645799999999999667999999999999999999987432222 1248999999
Q ss_pred HHHHHHhc-CCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccccCCCCCCCCCCC
Q 013458 233 LIAFRRST-NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDR 311 (442)
Q Consensus 233 L~~f~~~~-g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~~~~~~~~~~~ 311 (442)
|..|++.+ |.+|++|||||||||||||.+|+++|+++|++||++++++|+|+||||+|+||||+|||+.+ .
T Consensus 698 L~~~~~~~~~~~P~~IiiyRDGVseGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~ 769 (900)
T PLN03202 698 LLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------S 769 (900)
T ss_pred HHHHHHHcCCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------C
Confidence 99999865 69999999999999999999999999999999999998889999999999999999999863 2
Q ss_pred CCCCCCeeeeccccccCCcCcEEEeeeCCCcccccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHH
Q 013458 312 SGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYA 391 (442)
Q Consensus 312 ~~N~~~GTvvd~~i~~~~~~eFyL~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA 391 (442)
.+||+||||||++||+|..+||||+||.++|||+||+||+||+||+++++|+||+|||+|||+|+||+++||+|+|+|||
T Consensus 770 ~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYA 849 (900)
T PLN03202 770 PDNVPPGTVVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYA 849 (900)
T ss_pred CCCCCCceEeccccccCCcceEEEecccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccccCCCCCCCCCC-CCccccccCCCCccccccCCCCceeC
Q 013458 392 HLAAFRARYYIEDETSAGGSTGGSR-STADRNLAIRPLPVIKDNVKDVMFYC 442 (442)
Q Consensus 392 ~~~a~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~m~~~ 442 (442)
|++|.|+|+|+..+...++++++++ .+..+. ....+..+|+|++++||||
T Consensus 850 hlla~r~r~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~~~~Mfy~ 900 (900)
T PLN03202 850 HLAAAQMGQFMKFEDMSETSSSHGGITSAGAV-PVPELPRLHENVASSMFFC 900 (900)
T ss_pred HHHHHHhhhhccccCCccccccccccCCCCcc-ccccccccchhhcCCeeeC
Confidence 9999999999986543333322222 111111 1345678999999999998
No 2
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=6.5e-93 Score=731.91 Aligned_cols=375 Identities=53% Similarity=0.887 Sum_probs=332.3
Q ss_pred CCCCCcccCcccCeEEEEEecCCCCC----ChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhh
Q 013458 1 MINKKMFNGGRVEVWTCVNFSTRLNR----DVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQ 76 (442)
Q Consensus 1 m~~~~f~~~~~l~~W~iv~~~~~~~~----~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 76 (442)
|++++|++++++++|+++++.+..+. +.++.|++.|.+.|+.+||.+. ..... ..+.++..++.+.+..
T Consensus 45 ~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~~F~~~l~~~~~~~g~~~~--~~~~~---~~~~~~~~~~~~~~~~-- 117 (426)
T cd04657 45 LRGKKFLEGGPIRSWAVLNFAGPRRSREERADLRNFVDQLVKTVIGAGINIT--TAIAS---VEGRVEELFAKLKQAK-- 117 (426)
T ss_pred ecCcccCCCcccceEEEEEecCccccchhHHHHHHHHHHHHHHHHhcCCccc--ccccc---cchhHHHHHHHHHhhc--
Confidence 57889999999999999988753222 3799999999999999999986 22211 2223333333332221
Q ss_pred cCCCceEEEEEeCCCCCh-hhHHHHHhhhhcCceeeeeccccccc-chhhHHHHHHHHHHhhcCCeeeeeccccccCCCc
Q 013458 77 QGKQLQMLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASR-LNMQYFENVALKINVKVGGRNTVLVDAVQKRIPL 154 (442)
Q Consensus 77 ~~~~~~~vlvilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k-~~~~~~~ni~~kinaKlGG~n~~l~~~~~~~~p~ 154 (442)
...++|||||+|+++.+ |+.||++++.+.||+||||..+++.+ .+++++.||++|||+||||+||.++.+ ..++
T Consensus 118 -~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~~gI~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~---~~~~ 193 (426)
T cd04657 118 -GEGPQLVLVILPKKDSDIYGRIKRLADTELGIHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPD---IRPL 193 (426)
T ss_pred -cCCCCEEEEEEcCCCcchHHHHHHHHhhcCCcccEEEcccccccccchHHHHHHHHHHHHhcCCEeeecccc---cccc
Confidence 24799999999998756 99999999999999999999999876 678999999999999999999999865 2234
Q ss_pred cCCCCeEEEEEeecCCCCCC-CCCCeEEEEEeeeCCCCccceeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHH
Q 013458 155 VTDRPTIIFGADVTHPQPGE-DSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELL 233 (442)
Q Consensus 155 ~~~~~tmiiGidv~h~~~~~-~~~~si~avv~S~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L 233 (442)
+...+|||||+||+|++++. ...||++|+|||+| .++++|.+.++.|+.++|++++| ++|++++|
T Consensus 194 ~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Vas~d-~~~~~y~~~~~~q~~~~e~i~~l-------------~~~~~~~l 259 (426)
T cd04657 194 LTKEPTMVLGADVTHPSPGDPAGAPSIAAVVASVD-WHLAQYPASVRLQSHRQEIIDDL-------------ESMVRELL 259 (426)
T ss_pred cCCCCEEEEEEeeecCCCCCCCCCCcEEEEEEecC-CcccccceEEEEeCCCcchHHHH-------------HHHHHHHH
Confidence 45689999999999999875 46799999999999 99999999999999999999998 99999999
Q ss_pred HHHHHhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccccCCCCCCCCCCCCC
Q 013458 234 IAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSG 313 (442)
Q Consensus 234 ~~f~~~~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~~~~~~~~~~~~~ 313 (442)
+.|++.||.+|++|||||||||||||..|+++|+++|++||.++..+|+|+||||+|+||||+|||+.+..+. ....+
T Consensus 260 ~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~~E~~~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~--~~~~~ 337 (426)
T cd04657 260 RAFKKATGKLPERIIYYRDGVSEGQFAQVLNEELPAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDA--DGKNG 337 (426)
T ss_pred HHHHHHhCCCCceEEEEEcCcCHHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEeccceeeeEeccCcccc--cccCC
Confidence 9999999999999999999999999999999999999999999988899999999999999999999776421 12378
Q ss_pred CCCCeeeeccccccCCcCcEEEeeeCCCcccccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHH
Q 013458 314 NILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHL 393 (442)
Q Consensus 314 N~~~GTvvd~~i~~~~~~eFyL~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~ 393 (442)
|||||||||++||+|..+||||+||.++||||||+||+||+||+++++|+||+|||+|||+|++|+++||+|+|+||||+
T Consensus 338 N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y~vl~d~~~~~~d~lq~lt~~lc~~y~~~~~~vsip~p~~yA~~ 417 (426)
T cd04657 338 NVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHYHVLWDEIGFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHL 417 (426)
T ss_pred CCCCCeEEecccCCCCceeEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHHhhcccccCCCcccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh
Q 013458 394 AAFRARYYI 402 (442)
Q Consensus 394 ~a~r~~~~~ 402 (442)
+|+|||+|+
T Consensus 418 la~r~r~~~ 426 (426)
T cd04657 418 AAARARCYL 426 (426)
T ss_pred HHHHHhhcC
Confidence 999999986
No 3
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-89 Score=746.58 Aligned_cols=421 Identities=43% Similarity=0.676 Sum_probs=361.3
Q ss_pred CCCCCcccCcccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCC
Q 013458 1 MINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQ 80 (442)
Q Consensus 1 m~~~~f~~~~~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 80 (442)
|++++|++|+.+..|+|++|++..+.+. +.|+++|++.|+..||.+.. +. ........++...+......+. ..+
T Consensus 452 ~~~k~~~~~~~i~~wavv~f~~~~~~~~-~~f~~~L~~~c~~~Gm~i~~-~~--~~~~~~~~~~~~~~~~~~~~~~-~~~ 526 (876)
T KOG1041|consen 452 MRNKKFVKPAKIKSWAVVNFSNSETLRQ-KQFVDELIKICKDKGMEIKR-PR--KWAPTEESLEDMITEKSSMEKA-AAG 526 (876)
T ss_pred cccCcccccceEEEEEEEEecccccccH-HHHHHHHHHHHHHcCccccc-cc--ccCcccchhHHHHHHHHhhhcc-CCC
Confidence 6899999999999999999987666566 99999999999999999976 44 1112223444444443333222 367
Q ss_pred ceEEEEEeCCCCCh-hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhhcCCeeeeeccccccCCCccCCCC
Q 013458 81 LQMLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRP 159 (442)
Q Consensus 81 ~~~vlvilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaKlGG~n~~l~~~~~~~~p~~~~~~ 159 (442)
++++++|++++..+ |+.||++++...||+|||+..+++.+..++|+.||++|||+||||+|+.|..+.....| ....+
T Consensus 527 ~~li~~I~~~k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~KlGG~N~~l~~~~~~~~~-~~~~p 605 (876)
T KOG1041|consen 527 VQLVFIILPEKNPDVHDELKYIEETVGGLTTQCIRPTTAKKMSPQTLANLILKINVKLGGLNYVLVSPRSSRGP-KLDSP 605 (876)
T ss_pred ceEEEEEECCCCcchhHHHHHHHHHhcCceeEEeecchhcccchHHHHHHHHHHhhccCceeeEEecccccCcc-cCCCC
Confidence 99999999999888 99999999999999999999999888889999999999999999999988875322233 34689
Q ss_pred eEEEEEeecCCCCCCCC--CCeEEEEEeeeCCCCccceeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHH
Q 013458 160 TIIFGADVTHPQPGEDS--SPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFR 237 (442)
Q Consensus 160 tmiiGidv~h~~~~~~~--~~si~avv~S~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f~ 237 (442)
|||||+||+||+++... .|||||||+|+|| +.++|.+.+++|.+++|.|+++ ++|+.++|..|+
T Consensus 606 tl~IG~dVsHp~~~~~~~~~PSiagvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~~-------------~~~~~~~l~~f~ 671 (876)
T KOG1041|consen 606 TLFIGFDVSHPAAGTSFDGNPSIVGVVYNLDW-HPQKFAGFVRFQKSRQEVIQDL-------------GEMIRELLRSFR 671 (876)
T ss_pred eEEEEEeeeCCCcCCCcCCCccEEEEEecccc-cchhhcceEEEecCChhhhcch-------------HHHHHHHHHHHH
Confidence 99999999999988765 5999999999995 9999999999999999999886 999999999999
Q ss_pred HhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccccCCCCCCCCCCCCCCCCC
Q 013458 238 RSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILP 317 (442)
Q Consensus 238 ~~~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~~~~~~~~~~~~~N~~~ 317 (442)
+.++.+|+||||||||||||||.+|+++|+.+|++||..+.++|.|+||||+|+||||+|||+.+..+ +..+..+|+||
T Consensus 672 ~~t~~~P~~IIiyRdGvSEgqf~~vl~~E~~~ir~a~~~~~~~y~P~it~Iv~qKrHhtR~F~~~~~~-~~~~~~~Nv~p 750 (876)
T KOG1041|consen 672 KSTRKLPDRIVIYRDGVSEGQFSMVLEEELRAIKEACKKLQEGYNPKITVIVAQKRHHTRLFAAELSK-DGKAQSQNVPP 750 (876)
T ss_pred HhccCCCceEEEEecCCccchHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccceeeecccCCC-CccCCccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988752 33567789999
Q ss_pred eeeeccccccCCcCcEEEeeeCCCcccccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHHHHHH
Q 013458 318 GTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFR 397 (442)
Q Consensus 318 GTvvd~~i~~~~~~eFyL~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~~a~r 397 (442)
||+||+.||+|.++||||+||.++|||+||+||+||+||++++.|+||+|||.|||+|++|++|||||+|+||||++|+|
T Consensus 751 GT~VD~~It~p~~~dFyL~sh~g~qGTsrp~~Y~VL~dd~~~~~d~lq~lt~~Lc~~~qr~t~pvSiP~P~YyA~~~A~R 830 (876)
T KOG1041|consen 751 GTVVDTTITSPGYFDFYLCSHHGLQGTSKPTHYTVLYDDIGFSKDELQKLTYALCFTHQRCTKPVSLPAPLYYAHEVAKR 830 (876)
T ss_pred CCEecccccCCCcceEEEeccCcccccccCceEEEEeCCCCCCHHHHHHHHHHHhhheeeecCCCcCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccccCCCCCCCCCCC-CccccccCCCCccccccCCCCceeC
Q 013458 398 ARYYIEDETSAGGSTGGSRS-TADRNLAIRPLPVIKDNVKDVMFYC 442 (442)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~m~~~ 442 (442)
||++.+....+++.+.+..+ .+...........+|.++..+||||
T Consensus 831 gr~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~f~a 876 (876)
T KOG1041|consen 831 GRNNYKEHLREKNSSAIYQSIVDLDALNSEEGYKEKAGLFGTRFNA 876 (876)
T ss_pred hhhhhhhhccccCCCcccccccccchhhhhhHHHhhhcccceEEeC
Confidence 99994332222222211111 1111111345678999999999998
No 4
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=1.6e-85 Score=682.49 Aligned_cols=362 Identities=31% Similarity=0.493 Sum_probs=329.4
Q ss_pred CCCCcccCcccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCc
Q 013458 2 INKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQL 81 (442)
Q Consensus 2 ~~~~f~~~~~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 81 (442)
++.+|+.++++++|+++++. .+.+.++.|++.|.+.++.+||.+..|.++.+.+.+.+++.+.|++... .++
T Consensus 82 ~~~~~~~~~~~~~W~vi~~~--~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~------~~~ 153 (448)
T cd04658 82 RNQPLYDAVNLNNWVLIYPS--RDQREAESFLQTLKQVAGPMGIQISPPKIIKVKDDRIETYIRALKDAFR------SDP 153 (448)
T ss_pred cCCcccCCcccCeEEEEEec--CCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCCCCHHHHHHHHHHhhc------CCC
Confidence 46679999999999999875 3678999999999999999999998887776665556666666655543 579
Q ss_pred eEEEEEeCCCCCh-hhHHHHHhhhhcCceeeeecccccccc--hhhHHHHHHHHHHhhcCCeeeeeccccccCCCccCCC
Q 013458 82 QMLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRL--NMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDR 158 (442)
Q Consensus 82 ~~vlvilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~--~~~~~~ni~~kinaKlGG~n~~l~~~~~~~~p~~~~~ 158 (442)
+|+|||+|++..+ |+.||++++.+.||+||||..+++.+. ..+++.||++|||+||||+||.+..+ .....
T Consensus 154 ~lvvvilp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~------~~~~~ 227 (448)
T cd04658 154 QLVVIILPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP------PFILK 227 (448)
T ss_pred cEEEEEECCCCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC------CCCCC
Confidence 9999999998766 999999999999999999999998764 46789999999999999999999754 12347
Q ss_pred CeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccceeeEEEeccCchhh-hhhhhhccCCCCCccchhHHHHHHHHHHH
Q 013458 159 PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEI-IQDLYKSTQDPQRGLVHGGMIRELLIAFR 237 (442)
Q Consensus 159 ~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~y~~~~~~q~~~~e~-i~~l~~~~~~p~~~~~~~~~~~~~L~~f~ 237 (442)
+|||||+||+|++++ ..||++|+|||+| ++.++|++.++.|..++|+ +++| ++++.++|+.|+
T Consensus 228 ~tmiiGidv~h~~~~--~~~Si~a~vas~~-~~~~~~~~~~~~q~~~~e~~~~~l-------------~~~~~~~l~~y~ 291 (448)
T cd04658 228 NTMIVGIDVYHDTIT--KKKSVVGFVASLN-KSITKWFSKYISQVRGQEEIIDSL-------------GKSMKKALKAYK 291 (448)
T ss_pred CeEEEEEeeecCCCC--CCCcEEEEEEEcC-CCCceEeeEEEEeCCCceeeHHHH-------------HHHHHHHHHHHH
Confidence 899999999999863 4699999999999 9999999999999999887 8888 999999999999
Q ss_pred HhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccccCCCCCCCCCCCCCCCCC
Q 013458 238 RSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILP 317 (442)
Q Consensus 238 ~~~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~~~~~~~~~~~~~N~~~ 317 (442)
+.||.+|++|||||||||||||..++++|+++|++||..+..+|+|+||||+|+||||+|||+.++. ..+||||
T Consensus 292 ~~~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~~------~~~N~~~ 365 (448)
T cd04658 292 KENKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGN------NFSNPPP 365 (448)
T ss_pred HHhCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCCC------CCCCCCC
Confidence 9999999999999999999999999999999999999988888999999999999999999997652 4589999
Q ss_pred eeeeccccccCCcCcEEEeeeCCCcccccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHHHHHH
Q 013458 318 GTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFR 397 (442)
Q Consensus 318 GTvvd~~i~~~~~~eFyL~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~~a~r 397 (442)
|||||++||+|..+||||+||.++||||||+||+|++||+.+++|+||+|||+|||+|++|++++|+|+|+||||++|+|
T Consensus 366 GTvVd~~it~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~y~~~~~~vs~P~p~~yA~~~a~~ 445 (448)
T cd04658 366 GTVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYAHKLAFL 445 (448)
T ss_pred CcEecccccCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHhhhcccCCCCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hh
Q 013458 398 AR 399 (442)
Q Consensus 398 ~~ 399 (442)
+.
T Consensus 446 ~g 447 (448)
T cd04658 446 VG 447 (448)
T ss_pred hc
Confidence 64
No 5
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=3.3e-84 Score=661.44 Aligned_cols=362 Identities=32% Similarity=0.503 Sum_probs=317.0
Q ss_pred CCCCCcccCccc-CeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCC-CCeeccCCC--ChhHHHHHHHHHHHHHhh
Q 013458 1 MINKKMFNGGRV-EVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNP-RPVIPISSS--NPNQIEKALVDVHNRTAQ 76 (442)
Q Consensus 1 m~~~~f~~~~~l-~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~-~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 76 (442)
|++++|+.|+++ ++|+++++.+ +..++|++.|.+.++++||.+.+ |+...+... +.+++++.|++..+
T Consensus 23 ~~~~~f~~~~~~~~~W~vi~~~~----~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 94 (393)
T cd02826 23 RNIGPFEKPAKITNPVAVIAFRN----EEVDDLVKRLADACRQLGMKIKEIPIVSWIEDLNNSFKDLKSVFKNAIK---- 94 (393)
T ss_pred ccCCeeCCCCEeCCeEEEEEccc----HHHHHHHHHHHHHHHhCCCccCCCCCcceeecccccHHHHHHHHHHHhh----
Confidence 567899999999 9999998752 44679999999999999999987 543322221 24455555554433
Q ss_pred cCCCceEEEEEeCCCCCh-hhHHHHHhhhhcCceeeeeccccccc--chhhHHHHHHHHHHhhcCCeeeeeccccccCCC
Q 013458 77 QGKQLQMLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASR--LNMQYFENVALKINVKVGGRNTVLVDAVQKRIP 153 (442)
Q Consensus 77 ~~~~~~~vlvilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k--~~~~~~~ni~~kinaKlGG~n~~l~~~~~~~~p 153 (442)
.+++||+||+|+++.+ |+.||++++.. |||||||..+++.+ ..+++++||++|||+||||+||.|+.+
T Consensus 95 --~~~~lv~~ilp~~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~~~~~~~~~~~Ni~lkin~KlGG~~~~l~~~------ 165 (393)
T cd02826 95 --AGVQLVIFILKEKKPPLHDEIKRLEAKS-DIPSQVIQLKTAKKMRRLKQTLDNLLRKVNSKLGGINYILDSP------ 165 (393)
T ss_pred --cCCCEEEEEEcCCCccHHHHHHHHHhcc-CCceEEEehhhhccccccHHHHHHHHHHHhhhhCCeeeEeccC------
Confidence 4799999999998767 99999999877 99999999999876 668999999999999999999999764
Q ss_pred ccCCCCeEEEEEeecCCCCC-CCCCCeEEEEEeeeCCCCccceeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHH
Q 013458 154 LVTDRPTIIFGADVTHPQPG-EDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIREL 232 (442)
Q Consensus 154 ~~~~~~tmiiGidv~h~~~~-~~~~~si~avv~S~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~ 232 (442)
.+...+|||||+||+|++++ ....+|++|+|+|+| .. +.+.+..+.|..++|.++++ +++++++
T Consensus 166 ~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~-~~-~~~g~~~~~~~~~~~~~~~l-------------~~~~~~~ 230 (393)
T cd02826 166 VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLS-NH-TFLGGFLYVQPSREVKLQDL-------------GEVIKKC 230 (393)
T ss_pred CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecC-Cc-cccceEEEEecCccchHHHH-------------HHHHHHH
Confidence 12347899999999999875 345799999999999 55 33334567787788888888 9999999
Q ss_pred HHHHHHhcCC-CCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccccCCCCCCCCCCC
Q 013458 233 LIAFRRSTNF-KPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDR 311 (442)
Q Consensus 233 L~~f~~~~g~-~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~~~~~~~~~~~ 311 (442)
|+.|++++|. +|++|||||||||||||..++++|++++++||. +..+|+|+||+|+|+||||+|||+.++++ .
T Consensus 231 L~~y~~~~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~-~~~~~~p~it~Ivv~Krh~~Rff~~~~~~-----~ 304 (393)
T cd02826 231 LDGFKKSTGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACE-IEESYRPKLVIIVVQKRHNTRFFPNEKNG-----G 304 (393)
T ss_pred HHHHHHHcCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHh-hCCCCCCCEEEEEEeccccceeccCCCCC-----C
Confidence 9999999999 999999999999999999999999999999999 77789999999999999999999976532 2
Q ss_pred CCCCCCeeeeccccccCCcCcEEEeeeCCCcccccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHH
Q 013458 312 SGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYA 391 (442)
Q Consensus 312 ~~N~~~GTvvd~~i~~~~~~eFyL~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA 391 (442)
.+||+||||||.++|+|..+||||+||.++|||+||+||+|++||++++.|+||+|||.|||+|+||++++|+|+|+|||
T Consensus 305 ~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d~~~~~~d~lq~lty~lc~~y~~~~~~vslP~p~~yA 384 (393)
T cd02826 305 VQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFNDKNWSLNELEILTYILCLTHQNVYSPISLPAPLYYA 384 (393)
T ss_pred CCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEECCCCCCHHHHHHHHHHHhhcccccCCCcccChHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 013458 392 HLAAFRARY 400 (442)
Q Consensus 392 ~~~a~r~~~ 400 (442)
|++|+|||+
T Consensus 385 ~~~a~r~rn 393 (393)
T cd02826 385 HKLAKRGRN 393 (393)
T ss_pred HHHHHhhcC
Confidence 999999985
No 6
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=9.5e-81 Score=628.22 Aligned_cols=365 Identities=30% Similarity=0.477 Sum_probs=338.7
Q ss_pred CCCCcccCcccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCc
Q 013458 2 INKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQL 81 (442)
Q Consensus 2 ~~~~f~~~~~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 81 (442)
|.++++.+.++++|++++..+ +...+++|+++|.+.+..+||++.+|.++.+++.++.++.+++++... .++
T Consensus 462 R~c~i~~~~~l~~W~vi~p~r--~~~~a~~fi~~l~r~a~~mgm~i~~P~~v~i~ddr~~tYvraiqq~v~------~D~ 533 (845)
T KOG1042|consen 462 RTCGILRGSNLDNWAVIYPGR--NNSEAQEFINMLRRVASSMGMQIREPICVEIKDDRPGTYVRAIQQVVG------ADI 533 (845)
T ss_pred ccccccccCCCcceEEEecCc--cHHHHHHHHHHHHHhccccceecCCceEEEeCCCChHHHHHHHHHhcc------CCc
Confidence 678899999999999997654 567999999999999999999999998888999889998888887765 689
Q ss_pred eEEEEEeCCCCCh-hhHHHHHhhhhcCceeeeecccccccch--hhHHHHHHHHHHhhcCCeeeeeccccccCCCccCCC
Q 013458 82 QMLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLN--MQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDR 158 (442)
Q Consensus 82 ~~vlvilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~--~~~~~ni~~kinaKlGG~n~~l~~~~~~~~p~~~~~ 158 (442)
++|+|++|+.+++ |+.||++++.+..|||||++.+|+.+.. .++.++|++|||+||||.+|.++ ||+ .
T Consensus 534 qmvvcil~~~nk~~Y~sIKK~~cvd~pvPsQ~V~lrTl~~~~~lmSIAtKI~lQmnCKlGg~lW~V~------IPL---k 604 (845)
T KOG1042|consen 534 QMVVCILPSDNKTRYDSIKKYLCVDCPVPSQCVNLRTLAKRSKLMSIATKIALQMNCKLGGELWKVE------IPL---K 604 (845)
T ss_pred eEEEEEecCCchhhHHHHHhheeccCCCccceEEEEeecCcchhHHHHHHHHHHHhhhhcCcceEEe------eec---c
Confidence 9999999999888 9999999999999999999999987654 46788999999999999999986 676 7
Q ss_pred CeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccceeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHHH
Q 013458 159 PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRR 238 (442)
Q Consensus 159 ~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f~~ 238 (442)
.+|+||+||+|.+. .+..|++|+|||+| ..+++|+|.+.+|+.++|+.+.| +-++..+|++|++
T Consensus 605 ~lMiVG~Dv~hd~~--~k~rsvga~VAs~n-~~~tr~fS~v~~~~~~qel~d~L-------------~~~~~~ALr~y~~ 668 (845)
T KOG1042|consen 605 GLMIVGFDVYHDPT--LKGRSVGAFVASMN-NDFTRWFSRVIEQENGQELADNL-------------KVFLAKALRQYYE 668 (845)
T ss_pred cceEEEEEeecCcc--ccCceEEEEEEeec-cchhhhhhheecccCHHHHHHHH-------------HHHHHHHHHHHHH
Confidence 89999999999874 36789999999999 99999999999999999999998 9999999999999
Q ss_pred hcCCCCceEEEEecCCCchhHHHHHHHHHH----HHHHHHHhhcCCCCCCEEEEEEeeccccccccCCCCCCCCCCCCCC
Q 013458 239 STNFKPHRIIFYRDGVSEGQFSQVLLHEMN----AIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGN 314 (442)
Q Consensus 239 ~~g~~P~~IIiyRdGvsegq~~~v~~~Ei~----~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~~~~~~~~~~~~~N 314 (442)
.|..+|+|||+|||||++||++++.++||+ ++.+.+.++..+++|++++|+|+||.++|||..... +.+|
T Consensus 669 ~n~~LPsRIi~YRDGVgDGQLk~l~n~EV~~~~dql~~~~a~~~~~~~~rl~~iVV~KrvntR~f~~~~~------~~~N 742 (845)
T KOG1042|consen 669 VNRTLPSRIIVYRDGVGDGQLKTLVNYEVPLVCDQLLDCYAELSNKEKPRLAVIVVTKRVNTRFFLQGSS------NAQN 742 (845)
T ss_pred hcccCCceEEEEecCCCCcccceeeeeccchHHHHHHHHHHHhcCCCCCcEEEEEEEeeccHHHHhhCCc------cccC
Confidence 999999999999999999999999999999 666677777778999999999999999999998753 5899
Q ss_pred CCCeeeeccccccCCcCcEEEeeeCCCcccccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHHH
Q 013458 315 ILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLA 394 (442)
Q Consensus 315 ~~~GTvvd~~i~~~~~~eFyL~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~~ 394 (442)
|+||||||..||.|+.+||||+||..+|||..||+|.|+||++++++|.+|+|||.|||+|+||.++|++||||+|||||
T Consensus 743 P~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsYnvi~d~~gL~PDkmQrLtfKlCHlYyNW~GtiRVPApCqYAHKL 822 (845)
T KOG1042|consen 743 PPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSYNVIYDDMGLSPDKMQRLTFKLCHLYYNWPGTIRVPAPCQYAHKL 822 (845)
T ss_pred CCCCceecceecccceeeeEeehhhhhcCCcCCceEEEEecCCCCCHHHHHHHHHHHhheeecCCcceeccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccc
Q 013458 395 AFRARYYIEDE 405 (442)
Q Consensus 395 a~r~~~~~~~~ 405 (442)
|+....-+..|
T Consensus 823 AfLv~qslH~e 833 (845)
T KOG1042|consen 823 AFLVAQSLHRE 833 (845)
T ss_pred HHHHHhhhhhc
Confidence 99888877654
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=4.3e-75 Score=575.64 Aligned_cols=297 Identities=45% Similarity=0.747 Sum_probs=267.3
Q ss_pred EEEEEeCCCCCh-hhHHHHHhhhhcCceeeeecccccccc--hhhHHHHHHHHHHhhcCCe-eeeeccccccCCCccCCC
Q 013458 83 MLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRL--NMQYFENVALKINVKVGGR-NTVLVDAVQKRIPLVTDR 158 (442)
Q Consensus 83 ~vlvilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~--~~~~~~ni~~kinaKlGG~-n~~l~~~~~~~~p~~~~~ 158 (442)
++|||+|+++.+ |..+|++++.+.||+||||..+++.+. ..+++.||++|||+||||. +|.++.+ ...++ .
T Consensus 1 ~i~~ii~~~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~--~~~~~---~ 75 (302)
T PF02171_consen 1 LIVVIIPDKNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSP--PSIDL---K 75 (302)
T ss_dssp -EEEEESSSSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCS--SGSSE---S
T ss_pred CEEEEEeCCChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeecccc--ccccc---C
Confidence 588999997767 999999999999999999999999876 4689999999999999999 4555432 11222 6
Q ss_pred CeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccceeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHHH
Q 013458 159 PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRR 238 (442)
Q Consensus 159 ~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f~~ 238 (442)
++||||+||+|++++....||++|+|+|+| ++.++|.+.+..|..++|+++++ +++++++|+.|++
T Consensus 76 ~~miIGidv~h~~~~~~~~~sv~g~~~s~~-~~~~~~~~~~~~~~~~~e~~~~l-------------~~~~~~~L~~~~~ 141 (302)
T PF02171_consen 76 NTMIIGIDVSHPSPGSDKNPSVVGFVASFD-SDGSKYFSSVRFQDSGQEIIDNL-------------EEIIKEALKEFKK 141 (302)
T ss_dssp EEEEEEEEEEEESSTCTCSCEEEEEEEEES-TTTCEEEEEEEEECTTCCCHHHH-------------HHHHHHHHHHHHH
T ss_pred ceEEEEEEEEecCcccCCcceeeEEEEecc-CccccccceeEEeccchhhhcch-------------hhHHHHHHHHHHH
Confidence 899999999999876556799999999999 99999999999999999999998 9999999999999
Q ss_pred hcCC-CCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccccCCCCCCCCCCCCCCCCC
Q 013458 239 STNF-KPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILP 317 (442)
Q Consensus 239 ~~g~-~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~~~~~~~~~~~~~N~~~ 317 (442)
.|+. +|+||||||||||||||..++++|+++|++||.++..+|+|+|+||+|+|+|++|||+.++. +...||||
T Consensus 142 ~~~~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~-----~~~~N~~~ 216 (302)
T PF02171_consen 142 NNGKWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGR-----DGLQNPPP 216 (302)
T ss_dssp TTTT-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSE-----ETTTEECT
T ss_pred HcCCCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeecccc-----cccCCCCC
Confidence 9997 99999999999999999999999999999999999989999999999999999999998864 24789999
Q ss_pred eeeeccccccCCcCcEEEeeeCCCcccccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHHHHHH
Q 013458 318 GTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFR 397 (442)
Q Consensus 318 GTvvd~~i~~~~~~eFyL~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~~a~r 397 (442)
||+||+.+++|..+||||+||.+.+||+||+||+|+||++.++.|+||++||+|||+|++|++++|+|+|+||||++|+|
T Consensus 217 Gtvvd~~i~~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~ 296 (302)
T PF02171_consen 217 GTVVDTGITSPNYFEFYLVSHTARQGTARPTHYTVLYDDSNLSMDELQQLTYSLCHLYQNSTGPISLPAPLYYAHKLAKR 296 (302)
T ss_dssp TEEESSEEEECSBEEEEEETSCCCSSSEEEEEEEEEEESSCSCHHHHHHHHHHHTTGGTTSSS--SS-HHHHHHHHHHHH
T ss_pred CeeeccceeeecceeeeeeecccccccccccEEEEecCcccccHHHHHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhc
Q 013458 398 ARYYIE 403 (442)
Q Consensus 398 ~~~~~~ 403 (442)
++++++
T Consensus 297 ~~~~~~ 302 (302)
T PF02171_consen 297 GRNNLK 302 (302)
T ss_dssp HHHHC-
T ss_pred HHhhcC
Confidence 999864
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=8.8e-49 Score=402.31 Aligned_cols=290 Identities=20% Similarity=0.210 Sum_probs=229.1
Q ss_pred hhHHHHHHHHHHHHHhhcCCCceEEEEEeCCCC------Ch-hhHHHHHhhhhcCceeeeecccccccc--hhhHHHHHH
Q 013458 60 PNQIEKALVDVHNRTAQQGKQLQMLIIILPDVS------GS-YGRIKRVCETELGIVSQCCQPRQASRL--NMQYFENVA 130 (442)
Q Consensus 60 ~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~------~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~--~~~~~~ni~ 130 (442)
.+.+..+++.+..+. ..+++++||++|++. .+ |+.||+++ .+.|||||||..+++.+. ..++++||+
T Consensus 93 ~~~~~~a~~~~~~~~---~~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nia 168 (404)
T cd04659 93 AEAIIEAVDLALSES---SQGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLA 168 (404)
T ss_pred hHHHHHHHHHHHHhh---cCCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHH
Confidence 455666666665544 247999999999875 45 99999987 689999999999998764 578999999
Q ss_pred HHHHhhcCCeeeeeccccccCCCccCCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccceeeEEEeccCchhhhh
Q 013458 131 LKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQ 210 (442)
Q Consensus 131 ~kinaKlGG~n~~l~~~~~~~~p~~~~~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~y~~~~~~q~~~~e~i~ 210 (442)
+|||+|+||+||.|... ...+|||||+|++|+..+. ..+++++..+| .+...+ ...+...++.+.
T Consensus 169 l~i~aKlGG~pW~l~~~--------~~~~~~iIGidv~~~~~~~---~~~~~~a~vf~-~~g~g~---~~~~~~~~~~~~ 233 (404)
T cd04659 169 LALYAKLGGIPWKLDAD--------SDPADLYIGIGFARSRDGE---VRVTGCAQVFD-SDGLGL---ILRGAPIEEPTE 233 (404)
T ss_pred HHHHHhcCCCceEcccC--------CCCCeEEEEEEEEEcCCCC---EEEEEEEEEEc-CCCCEE---EEecCccCCccc
Confidence 99999999999999752 1368999999999997542 22233333334 332122 112222222221
Q ss_pred hhhhccCCCCCccchhHHHHHHHHHHHHhcCC-CCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEE
Q 013458 211 DLYKSTQDPQRGLVHGGMIRELLIAFRRSTNF-KPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVV 289 (442)
Q Consensus 211 ~l~~~~~~p~~~~~~~~~~~~~L~~f~~~~g~-~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~ 289 (442)
+- ....+.+++.++|+.|++.++. +|+||||||||+. .++|+++|++|+.+++ +++++|+
T Consensus 234 ~~--------~~~~~~~~l~~~l~~y~~~~~~~~P~rIiihrdg~~-------~~~E~~~i~~a~~~~~----~~i~~I~ 294 (404)
T cd04659 234 DR--------SPADLKDLLKRVLEGYRESHRGRDPKRLVLHKDGRF-------TDEEIEGLKEALEELG----IKVDLVE 294 (404)
T ss_pred cc--------CHHHHHHHHHHHHHHHHHHcCCCCCeEEEEECCCCC-------CHHHHHHHHHHHHhhC----ceEEEEE
Confidence 00 0122389999999999999998 9999999999984 5899999999999873 9999999
Q ss_pred EeeccccccccCCCCCCCCCCCCCCCCCeeeeccccccCCcCcEEEeeeCCC--------cccccceeeEEEecCCCCCH
Q 013458 290 VQKRHHTRLFPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGI--------QGTSRPTHYHVLYDENRFSA 361 (442)
Q Consensus 290 v~K~~~~Rff~~~~~~~~~~~~~~N~~~GTvvd~~i~~~~~~eFyL~s~~~~--------~GTarP~~Y~vl~d~~~~~~ 361 (442)
|+|+|++|||..+..+ ...||++||+|+.+ .++|||++|... +||++|+| |++++...+.
T Consensus 295 V~k~~~~R~f~~~~~~-----~~~np~~GT~v~~~-----~~~~~L~s~g~~~~~~~~~~~gtp~Pl~--v~~~~~~~~~ 362 (404)
T cd04659 295 VIKSGPHRLFRFGTYP-----NGFPPRRGTYVKLS-----DDEGLLWTHGSVPKYNTYPGMGTPRPLL--LRRHSGNTDL 362 (404)
T ss_pred EEecCCcceEEecCCC-----CCCCCCCceEEEeC-----CCeEEEEecCCccccccCCCCCCCCcEE--EEEccCCCCH
Confidence 9999999999865431 12799999999853 489999999875 89999999 7788888999
Q ss_pred HHHHHHHHHhhhccCcCCC-CcccccchHHHHHHHHHHh
Q 013458 362 DDFQVLTNNLCYTYARCTR-SVSIVPPAYYAHLAAFRAR 399 (442)
Q Consensus 362 d~lq~lt~~Lc~~~~~~~~-~islPapl~yA~~~a~r~~ 399 (442)
|+|++++|.||++|++++. ++++|+|++|||++|+...
T Consensus 363 ~~l~~~~~~Lt~~~~n~~~~~~~lP~ti~YA~~~a~~~~ 401 (404)
T cd04659 363 EQLASQILGLTKLNWNSFQFYSRLPVTIHYADRVAKLLK 401 (404)
T ss_pred HHHHHHHHHHhhcCcCCCCCCCCcceEEeHHHHHHHHHh
Confidence 9999999999999999988 9999999999999997754
No 9
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=5.9e-14 Score=142.79 Aligned_cols=304 Identities=16% Similarity=0.151 Sum_probs=182.5
Q ss_pred CChhHHHHHHHHHHHhhcC-cccCCC-CeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh-hhHHHHHh
Q 013458 26 RDVPFQFCQGLVDMCNSKG-MVFNPR-PVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS-YGRIKRVC 102 (442)
Q Consensus 26 ~~~~~~f~~~L~~~~~~~G-i~i~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~-Y~~iK~~~ 102 (442)
...++.+++.+....+..+ +...-. +-+.+.+.++.. ..-|..+.+++ ....+...-+-+++. |+.+|+
T Consensus 355 ~~rlk~~~kkv~~~fkn~n~i~~k~eg~~l~~a~~r~~~-kddl~~iIkei-----d~ee~~k~e~ykdd~~YailKr-- 426 (685)
T COG1431 355 LTRLKSTIKKVVYGFKNSNGIDWKVEGLTLHVAGKRPKM-KDDLTKIIKEI-----DVEELKKQEMYKDDVKYAILKR-- 426 (685)
T ss_pred hhHHHHHHHHHHHHHHhccchhhhcccceeeecccchhh-hccchhhhhhh-----hhhhhccccccccchHHHHHHh--
Confidence 3467889999999998887 443211 222232222211 12233343332 122233333444444 999998
Q ss_pred hhhcCceeeeecccccccchhhHHHHHHHHHHhhcCCeeeeeccccccCCCccCCCCeEEEEEeecCCCCCCCCCCeEEE
Q 013458 103 ETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAA 182 (442)
Q Consensus 103 ~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaKlGG~n~~l~~~~~~~~p~~~~~~tmiiGidv~h~~~~~~~~~si~a 182 (442)
.+.-||+|.|.-.+.++.-..++.|++.|+.+|.+|+|+.+.+. .-| .+.|+|+||+...-+ ...+-|
T Consensus 427 -ld~~ipsqvil~~n~rk~~Kg~~tnla~~~~~ktlgqpY~~r~~---~gp-----vDaivGlDvsr~~~g---n~tV~g 494 (685)
T COG1431 427 -LDETIPSQVILDPNNRKPYKGTKTNLASKRYLKTLGQPYLKRNG---LGP-----VDAIVGLDVSRVSEG---NWTVEG 494 (685)
T ss_pred -hcccCcceeeeccccCCcchhhhhHHHHHHHHHhcCCceeeecc---CCC-----ccceeeeeeeEEeeC---CeEEee
Confidence 45679999999998887778899999999999999999988764 122 369999999987532 334444
Q ss_pred EEeeeCC-CCccceeeEEEeccC-chhhhhhhhhccCCCCCccchhHHHHHHHHHHHHhcC-CCCceEEEEecCCCchhH
Q 013458 183 VVASMDW-PEVTKYRGLVSAQAH-HEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTN-FKPHRIIFYRDGVSEGQF 259 (442)
Q Consensus 183 vv~S~d~-~~~~~y~~~~~~q~~-~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f~~~~g-~~P~~IIiyRdGvsegq~ 259 (442)
+....|. +.+.+|+-....--+ +-+.+ ++.+. .-. +.+ ..-.+||++|||.
T Consensus 495 ct~~f~seg~l~eyy~t~tpa~GErl~~~----------------g~yle----~~~-~~gfe~~n~iV~lRDG~----- 548 (685)
T COG1431 495 CTSCFVSEGGLEEYYHTVTPALGERLETS----------------GRYLE----KMN-WRGFESRNLIVTLRDGK----- 548 (685)
T ss_pred eeEEEeccCceEEeeecccCCccchhhhH----------------HHHHH----HHH-hhhhhccCeeEEEecCc-----
Confidence 3333330 233444333221110 00111 11111 110 112 3447899999994
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccccCCCCCCCCCCCCCCCCCeeeeccccccCCcCcEEEe---
Q 013458 260 SQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLN--- 336 (442)
Q Consensus 260 ~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~~~~~~~~~~~~~N~~~GTvvd~~i~~~~~~eFyL~--- 336 (442)
+...|++++++.=.++ ....+++.+.| .+.+||..+.. .+ |-.+.-++..+. ++
T Consensus 549 --l~~~E~aavkeyg~el----gsn~ev~~i~k-nNp~vf~~e~~-------i~----g~f~~~~~s~~h-----~~~~~ 605 (685)
T COG1431 549 --LVAGEIAAVKEYGGEL----GSNPEVNRILK-NNPWVFAIEGE-------IW----GAFVRLDGSTVH-----LCCSP 605 (685)
T ss_pred --cchHHHHHHHHHhhhc----CCChhhheecc-cCCeEEEecce-------ee----eEEEecCCcccc-----cccCC
Confidence 6677877666654444 34556666655 56668886642 11 333322211110 11
Q ss_pred eeCCCcccccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCC--cccccchHHHHHHHHHHhhh
Q 013458 337 SHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRS--VSIVPPAYYAHLAAFRARYY 401 (442)
Q Consensus 337 s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~--islPapl~yA~~~a~r~~~~ 401 (442)
+.....||.+|.... ..+..++-|-|- |+|.|+-+++....+ .+||||+||||++.|.++.-
T Consensus 606 ynpv~~gT~~pi~~r--~~~g~l~~e~i~-lv~dLT~mNys~~~g~~~rlPApvhYaDk~~kl~~~~ 669 (685)
T COG1431 606 YNPVRRGTPRPIALR--RRDGKLDGELIG-LVHDLTAMNYSNPSGTWSRLPAPVHYADKASKLARYG 669 (685)
T ss_pred CCceecCCCcccccc--cccCccchhhHH-HHHHhhhhccCCCCCceecCCcchhhhHHHHHHHhcc
Confidence 124557999998744 334445666666 999999999998888 99999999999999998873
No 10
>PF13032 DUF3893: Domain of unknown function (DUF3893)
Probab=95.52 E-value=0.033 Score=48.64 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=46.0
Q ss_pred cccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHHHHHHHhhhhcc
Q 013458 344 TSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIED 404 (442)
Q Consensus 344 TarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~~a~r~~~~~~~ 404 (442)
....+=++|+.-...-+.+++..+|+.||+.+.-+...+++|.|+|+|.++ +.|+-+
T Consensus 66 ~~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~~----~eYi~~ 122 (138)
T PF13032_consen 66 NPQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQA----KEYILP 122 (138)
T ss_pred CCCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHHH----HHHccc
Confidence 345555677765555688999999999999999999999999999999884 566654
No 11
>PRK11617 endonuclease V; Provisional
Probab=93.97 E-value=2.6 Score=39.90 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=36.7
Q ss_pred ccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHHHHHHHhhhh
Q 013458 345 SRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYI 402 (442)
Q Consensus 345 arP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~~a~r~~~~~ 402 (442)
.+|+-.++ -..++.|+-..++-++|- --++|.|+..||.+|++.+...
T Consensus 170 ~kPiyVS~---Gh~i~l~~A~~~v~~~~~-------~yRlPePlR~Ad~ls~~~~~~~ 217 (224)
T PRK11617 170 CNPLFIST---GHRVSLDSALAWVQRCMK-------GYRLPEPTRWADALASRRPAFV 217 (224)
T ss_pred CCCEEEcC---CCCcCHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHhhhhhhh
Confidence 57764332 346899999999999873 3489999999999998777654
No 12
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=93.64 E-value=1.4 Score=41.21 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=32.4
Q ss_pred ccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHHHHH
Q 013458 345 SRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAF 396 (442)
Q Consensus 345 arP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~~a~ 396 (442)
.+|+-.++ -..++.|+-.+++-.+| +.-++|.|+..||++|+
T Consensus 166 ~~PiyVS~---Gh~i~l~~A~~~v~~~~-------~~~r~Pep~R~Ad~~sr 207 (208)
T cd06559 166 VKPVYVSP---GHRIDLETAVELVLKCC-------KGYRLPEPTRLADLLSR 207 (208)
T ss_pred CCCEEEcC---CCCcCHHHHHHHHHHHc-------cCCCCCcHHHHHHHHhc
Confidence 57764332 34689999999998886 33789999999999985
No 13
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=91.52 E-value=1.4 Score=39.22 Aligned_cols=100 Identities=21% Similarity=0.256 Sum_probs=50.3
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCc-cceeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 013458 158 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEV-TKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 236 (442)
Q Consensus 158 ~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~-~~y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f 236 (442)
.|.-|-++|+||-.. .-.++++|.-.| +.. -+.+-.+..... +-.+|. ++|.|.|..+
T Consensus 10 ~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~-G~~~k~~YR~f~i~~~--~~~dDy--------------~~M~Evl~RR 68 (155)
T PF08459_consen 10 LPRRIECFDISHIQG----SDTVGSMVVFEN-GKPDKSEYRRFNIKTV--DGGDDY--------------AAMREVLTRR 68 (155)
T ss_dssp --SEEEEEEEEECTT----TCEEEEEEEEET-TEE-GGG-EEEEEE----STT-HH--------------HHHHHHHHHH
T ss_pred CCCEEEEEECcccCC----cccEEEEEEEEC-CccChhhCceEecCCC--CCCcHH--------------HHHHHHHHHH
Confidence 467899999999763 356777776555 321 122223333311 111443 4445555555
Q ss_pred HH----hcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeec
Q 013458 237 RR----STNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKR 293 (442)
Q Consensus 237 ~~----~~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~ 293 (442)
.+ ....+|+=|+| || +.||+ .+.++++.+++ .. +-+|...|+
T Consensus 69 ~~~~~~~~~~lPDLilI--DG-G~gQl--------~aa~~~l~~lg--l~--i~viglaK~ 114 (155)
T PF08459_consen 69 FKRLKEEKEPLPDLILI--DG-GKGQL--------NAAKEVLKELG--LN--IPVIGLAKN 114 (155)
T ss_dssp HCCCHHHT----SEEEE--SS-SHHHH--------HHHHHHHHCTT--------EEEEESS
T ss_pred HhcccccCCCCCCEEEE--cC-CHHHH--------HHHHHHHHHcC--CC--eEEEEEEec
Confidence 43 23468997777 77 45665 44588888773 33 556666664
No 14
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]
Probab=86.77 E-value=19 Score=33.73 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHHHHHHH
Q 013458 356 ENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA 398 (442)
Q Consensus 356 ~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~~a~r~ 398 (442)
.+..++++.-+|+.+|| .+ .++|.|+..||.+|++.
T Consensus 176 g~~i~l~sal~l~~~l~------~~-~rlpeptr~ad~~a~~~ 211 (212)
T COG1515 176 GHRISLPSALKLAQRLS------KG-YRLPEPTRLADILAKKR 211 (212)
T ss_pred CCccCHHHHHHHHHHHc------cc-ccCCCcccHHHHhhhhc
Confidence 34578999999999986 34 88999999999999764
No 15
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=86.61 E-value=5 Score=43.43 Aligned_cols=113 Identities=21% Similarity=0.219 Sum_probs=60.1
Q ss_pred eEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccc-eeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHHH
Q 013458 160 TIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRR 238 (442)
Q Consensus 160 tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f~~ 238 (442)
.-|-++|+||-.+ .-.|+++|.-.| +...+ .+-.+..... +-.+|. .+|.+++.+.+..+.+
T Consensus 382 ~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~i~~~--~~~dDy----------a~m~Evl~RR~~r~~~ 444 (574)
T TIGR00194 382 KRIEIFDISHIDG----SQTVGSMVVFED-GKPLKASYRRYNINSI--TGGDDY----------AAMREVLRRRYSSIQK 444 (574)
T ss_pred CEEEEEECCccCC----CcceEEEEEEeC-CccChhhCCeeecCCC--CCCCHH----------HHHHHHHHHHHhhhcc
Confidence 7799999999863 346777776666 33222 1111222110 012343 2234444444433322
Q ss_pred hcC-CCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEee--ccccccccCC
Q 013458 239 STN-FKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQK--RHHTRLFPAD 302 (442)
Q Consensus 239 ~~g-~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K--~~~~Rff~~~ 302 (442)
... .+|+=|+| || +.||+. +..+++.+++ ....+.+|...| +|.+++|..+
T Consensus 445 ~~~~~~PDLili--DG-GkgQl~--------aa~~~l~~lg--~~~~i~viglaK~~~~~~~i~~~~ 498 (574)
T TIGR00194 445 KNNLPLPDLILI--DG-GKGQLN--------AALEVLKSLG--VVNKPIVIGLAKAKRHETDIFLIG 498 (574)
T ss_pred ccCCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcC--CCCCCcEEEEEecCCCceEEEeCC
Confidence 111 48987666 66 456654 4477777773 211356777777 5666776544
No 16
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=83.27 E-value=10 Score=40.51 Aligned_cols=112 Identities=18% Similarity=0.282 Sum_probs=59.4
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccc-eeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 013458 158 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 236 (442)
Q Consensus 158 ~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f 236 (442)
.|.-|-|+|+||-.+ .-.|+++|.-.| +...+ .+-.+..... +-.+|+ .+|.+++.+.+..+
T Consensus 365 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~p~k~~YR~f~Ik~~--~~~dDy----------~~m~Evl~RR~~r~ 427 (519)
T PRK12306 365 PPNVIECFDISHLSG----TSTVGSMVQFRN-GKPDKKNYRRFKIKTV--EGIDDF----------ASIAEVVRRRYSRL 427 (519)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEeC-CccChhhcCeeecCCC--CCCCHH----------HHHHHHHHHHHhhc
Confidence 456799999999763 346777776666 33221 2222222210 112343 12244444333332
Q ss_pred HHhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccccCC
Q 013458 237 RRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAD 302 (442)
Q Consensus 237 ~~~~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~~ 302 (442)
.+.++.+|+=||| || +-||+. +..+++.+++ . .+.+|...|+. .++|..+
T Consensus 428 ~~~~~~~PDLilI--DG-GkgQl~--------aa~~~l~elg--~--~i~viglaK~~-e~i~~p~ 477 (519)
T PRK12306 428 LEENSELPDLIVI--DG-GKGQLS--------SAFKELRKLG--L--KIPLISIAKRE-EEIYVPG 477 (519)
T ss_pred ccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcC--C--CCcEEEEEcCc-eEEEeCC
Confidence 2211248987766 66 456654 4477787774 2 46678888854 4555443
No 17
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=79.87 E-value=18 Score=39.10 Aligned_cols=115 Identities=19% Similarity=0.210 Sum_probs=60.1
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccc-eeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 013458 158 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 236 (442)
Q Consensus 158 ~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f 236 (442)
.|.-|-++|+||-.+ .-.|+++|.-.| +...+ .+-.+..........+|. .+|.+++.+.+..+
T Consensus 357 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YRkf~ik~~~~~~~DD~----------a~M~Evl~RR~~r~ 421 (574)
T PRK14670 357 LPKTIEGFDIAHLNG----QKTVASLVTFKM-GKPFKDGYRVYKINSLLKGEIDDF----------KAIKEVISRRYSKL 421 (574)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeeccCCCCCCCCHH----------HHHHHHHHHHHhhc
Confidence 457899999999863 346777777666 33222 222222221100002343 12234443333332
Q ss_pred HHhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccccC
Q 013458 237 RRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPA 301 (442)
Q Consensus 237 ~~~~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~ 301 (442)
.+..+.+|+=||| || +.||+. +..+++.+++ ....+.+|...|+. .++|..
T Consensus 422 ~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~~lg--~~~~i~v~gLaK~~-e~i~~~ 472 (574)
T PRK14670 422 INEQLELPNLILI--DG-GKGQLN--------AAYSILKGLK--IENKVKVCALAKKE-ETIFLP 472 (574)
T ss_pred ccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcC--CCCCceEEEEecCC-eEEEeC
Confidence 2211258987776 66 456654 4577777773 32236788888855 445543
No 18
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=77.31 E-value=26 Score=38.62 Aligned_cols=109 Identities=25% Similarity=0.357 Sum_probs=61.1
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccc-eeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 013458 158 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 236 (442)
Q Consensus 158 ~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f 236 (442)
.|..|-++|+||-.+ .-.|+++|.-.| +...+ .|-.+.+... +.-.+|+ .+|.|.|...
T Consensus 453 ~p~rIE~fDiSh~~G----~~~VasmVvf~~-G~p~k~~YR~f~ik~~-~~~~DD~--------------asM~Evl~RR 512 (691)
T PRK14672 453 IPTLIEGFDISHLGG----KYTVASLICFKN-GAPDTKNYRLFNLRAH-DTRIDDF--------------ASMREAIARR 512 (691)
T ss_pred CCCeEEEEECCccCC----cCceEEEEEEEC-CccChhhCCeeeccCC-CCCCchH--------------HHHHHHHHHH
Confidence 468999999999863 346777777666 33221 1222222211 0012443 3444555444
Q ss_pred HHhc---CCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccccCC
Q 013458 237 RRST---NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAD 302 (442)
Q Consensus 237 ~~~~---g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~~ 302 (442)
.++. +.+|+=||| || +.||+ .+.++++.+++ . .+.+|...|+. ..+|..+
T Consensus 513 ~~r~~~~~~~PDLilI--DG-GkgQl--------~aa~~vl~elg--l--~i~vigLaKr~-e~i~~~~ 565 (691)
T PRK14672 513 YTHTPEGYTLPDLILV--DG-GIGHV--------SAAQHVLDALG--L--SIPLVGLAKRA-EELFIPN 565 (691)
T ss_pred hhcccccCCCCCEEEE--eC-CHHHH--------HHHHHHHHHcC--C--CCcEEEEEecc-cEEEeCC
Confidence 4332 258987776 66 44654 44577887774 2 46688888865 5555443
No 19
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=77.10 E-value=19 Score=38.97 Aligned_cols=107 Identities=22% Similarity=0.252 Sum_probs=59.5
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccc-eeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 013458 158 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 236 (442)
Q Consensus 158 ~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f 236 (442)
.|.-|-++|+||-.+ .-.|+++|.-.| +...+ .+-.+..... +-.+|+ .+|.|.|...
T Consensus 360 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~i~~~--~~~dD~--------------~~m~Evl~RR 418 (567)
T PRK14667 360 LPERIEGFDISHFYG----EFTVGSCVVWED-GSMNKKEYRRYKIKTV--DGIDDY--------------ASLREVLTRR 418 (567)
T ss_pred CCCeEEEEECcccCC----CcceEEEEEEEC-CccChhhCCeeecCCC--CCCCHH--------------HHHHHHHHHH
Confidence 467899999999763 346777777666 33222 1112222211 112443 3344444443
Q ss_pred HHh----cCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccccC
Q 013458 237 RRS----TNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPA 301 (442)
Q Consensus 237 ~~~----~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~ 301 (442)
.++ ++.+|+=|+| || +.||+. +..+++.+++- .+.+|...|+. .++|..
T Consensus 419 ~~r~~~~~~~~PDLili--DG-GkgQl~--------aa~~~l~~lg~----~i~v~glaK~~-e~i~~~ 471 (567)
T PRK14667 419 ARRYKEGENPMPDLWLI--DG-GKGQLS--------VGIEVRDRLGL----NIKVFSLAKKE-EILYTE 471 (567)
T ss_pred hhhccccCCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CCcEEEEEecC-cEEEcC
Confidence 332 2248987766 66 456654 45777877742 35677777854 455544
No 20
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=76.89 E-value=18 Score=39.72 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=58.9
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccc-eeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 013458 158 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 236 (442)
Q Consensus 158 ~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f 236 (442)
.|.-|-|+|+||-.+ .-.|+++|.-.| +...+ -+-.+..... .-.+|. .+|.|.|...
T Consensus 414 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~ik~~--~~~dDy--------------~~m~Evl~RR 472 (621)
T PRK14671 414 LPRRIECFDNSHFQG----TDYVSSMVCFVD-GKPKKSDYRKFKLRSF--EGSDDY--------------AAMREVVTRR 472 (621)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeecCCC--CCCCHH--------------HHHHHHHHHH
Confidence 457899999999863 346777776666 33221 1112222211 012343 3344444443
Q ss_pred HHh----cCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccccC
Q 013458 237 RRS----TNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPA 301 (442)
Q Consensus 237 ~~~----~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~ 301 (442)
..+ ++.+|+=|+| || +.||+. +..+++.+++- .+.+|...|+ ..++|..
T Consensus 473 ~~r~~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~~lg~----~i~viglaK~-~e~i~~~ 525 (621)
T PRK14671 473 YSGSLAEELPLPDLIVI--DG-GKGQVN--------SAWKVLQELGL----SVPVIGLAKR-LEEIFTP 525 (621)
T ss_pred hhccccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CCcEEEEEec-ccEEEeC
Confidence 332 1258987776 66 456654 45777877732 4667888884 4555554
No 21
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=75.26 E-value=22 Score=38.87 Aligned_cols=113 Identities=17% Similarity=0.208 Sum_probs=59.4
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccc-eeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 013458 158 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 236 (442)
Q Consensus 158 ~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f 236 (442)
.|.-|-++|+||-.+ .-.|+++|.-.| +...+ .+-.+..... +-.+|+ .+|.+++.+.+..+
T Consensus 395 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YRkf~Ik~~--~~~DDy----------a~M~Evl~RR~~r~ 457 (624)
T PRK14669 395 LPSRIECFDISHIQG----AETVASMVVWED-GKMKKSDYRKFIIKTV--VGVDDF----------ASMREVVTRRYSRL 457 (624)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeecCCC--CCCCHH----------HHHHHHHHHHhhcc
Confidence 457899999999763 346777776566 33221 1112222110 012343 12244444333332
Q ss_pred HHhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccccCC
Q 013458 237 RRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAD 302 (442)
Q Consensus 237 ~~~~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~~ 302 (442)
.+....+|+=||| || +.||+. +..+++.+++ .. .+.+|...|+. .++|..+
T Consensus 458 ~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~elg--l~-~i~vigLaK~~-e~i~~p~ 508 (624)
T PRK14669 458 QEEKQPMPGLVLI--DG-GLGQLH--------AAAEALEAIG--IT-DQPLASIAKRE-EIIYVFG 508 (624)
T ss_pred ccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcC--CC-CCcEEEEecCC-eEEECCC
Confidence 2211248987766 66 456654 4577787774 21 26677777865 4566543
No 22
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=72.88 E-value=22 Score=29.93 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 63 IEKALVDVHNRTAQQGKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 63 ~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
+.+.++.-.+..+..+..|.++++.+.+.... |...|.-.+.+.||.+..+.... .....-+...+.++|.-
T Consensus 12 i~~~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 12 IKEELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPE--DISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-T--TSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCC--CcCHHHHHHHHHHHhCC
Confidence 33444444444444456799998888876554 98888777789999999998742 12345667788888854
No 23
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=71.48 E-value=32 Score=37.59 Aligned_cols=104 Identities=19% Similarity=0.187 Sum_probs=54.2
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccc-eeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 013458 158 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 236 (442)
Q Consensus 158 ~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f 236 (442)
.|.-|-++|+||-.+ .-.|+++|.-.| +...+ .+-.+..... +-.+|. .+|.+++.+.+...
T Consensus 382 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~i~~~--~~~dDy----------a~m~Evl~RR~~~~ 444 (598)
T PRK00558 382 PPYRIECFDISHIQG----TATVASMVVFED-GGPDKSEYRRYNIKGV--TGGDDY----------AAMREVLTRRYSRL 444 (598)
T ss_pred CCCEEEEEECCccCC----CcceEEEEEEEC-CccChhhCCeeecCCC--CCCCHH----------HHHHHHHHHHhhcc
Confidence 467899999999763 356777776556 33221 1111222210 112333 12233333333222
Q ss_pred HHhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeec
Q 013458 237 RRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKR 293 (442)
Q Consensus 237 ~~~~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~ 293 (442)
.+..+.+|+=||| || +.||+. +..+++.+++ . .+.+|...|+
T Consensus 445 ~~~~~~~PDLili--DG-GkgQl~--------~a~~~l~~lg--~--~i~v~glaK~ 486 (598)
T PRK00558 445 LKEFGPLPDLILI--DG-GKGQLN--------AAKEVLEELG--L--DIPVVGLAKG 486 (598)
T ss_pred ccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHCC--C--CCcEEEEEec
Confidence 2112358987776 66 456654 4477777774 2 3556676663
No 24
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=70.44 E-value=51 Score=36.45 Aligned_cols=100 Identities=19% Similarity=0.164 Sum_probs=55.0
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccc-eeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 013458 158 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 236 (442)
Q Consensus 158 ~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f 236 (442)
.+.-|-++|+||-+. .-.++++|.-.| +...+ .|-.+.+... + .+|+ .+|.+.|...
T Consensus 471 ~p~rIE~~DiSh~~G----~~~v~~mVvf~~-G~p~k~~YR~f~i~~~--~-~dD~--------------~~m~ev~~RR 528 (694)
T PRK14666 471 PPHRIEAVDVSHTGG----RNTRVGMVVFED-GKPARDAYRTYAFEDG--E-GDDY--------------GTLAAWAGRR 528 (694)
T ss_pred CCCEEEEEECcccCC----cCceEEEEEEEC-CccChhhCCeeeCCCC--C-CChH--------------HHHHHHHHHH
Confidence 467899999999863 345677776566 33222 1112222211 1 1443 3344444444
Q ss_pred HHhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEee
Q 013458 237 RRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQK 292 (442)
Q Consensus 237 ~~~~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K 292 (442)
.++...+|+=|+| || +.||+. +..+++.+++- ...+.+|...|
T Consensus 529 ~~~~~~~PDLili--DG-G~gQl~--------aa~~~l~e~g~--~~~~~v~~laK 571 (694)
T PRK14666 529 VESGPPWPDLLLV--DG-GRGQLA--------AVVRALEEAGM--GGLFAVASIAK 571 (694)
T ss_pred hcCCCCCCCEEEE--cC-CHHHHH--------HHHHHHHHcCC--CCCccEEEEec
Confidence 3332358987666 66 456654 44777777743 22366777777
No 25
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=66.69 E-value=31 Score=32.27 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHHHH
Q 013458 358 RFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAA 395 (442)
Q Consensus 358 ~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~~a 395 (442)
.++.+..-+++.++|- +-.++|.|++.||+++
T Consensus 175 ~i~l~ta~~iv~~~~~------~~~r~PeP~r~Ad~~t 206 (206)
T PF04493_consen 175 RISLETALEIVLKLCK------GGYRLPEPTRLADLLT 206 (206)
T ss_dssp SS-HHHHHHHHHHTSS------TTSSS-HHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHcC------CCCcCCCcchhhhhcC
Confidence 4789999999998863 2368999999999874
No 26
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.08 E-value=44 Score=32.82 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
.+.+.+++-.++++.++..|.|+++...+.... |...|.....+.||.+..+....- ....-+.+.+.++|.-
T Consensus 12 ~i~~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~t~~~l~~~I~~lN~D 86 (282)
T PRK14166 12 KIKEELKEKNQFLKSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNEN--TTQNELLALINTLNHD 86 (282)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 344444444444433345788888888776555 988887778899999999987531 1233466777788853
No 27
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.02 E-value=44 Score=33.12 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHh
Q 013458 61 NQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 135 (442)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kina 135 (442)
+.+.+.++...++.++++..|.|+++...+.... |...|...+.+.||.+-.+.... .....-+.+.+.++|.
T Consensus 14 ~~i~~~lk~~i~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 14 ARVLAQVREDVRTLKAAGIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPA--DTSQARLLALIAELNA 88 (301)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHcC
Confidence 3444455555555444346799998888877655 99998878889999998887642 1223445577777774
No 28
>PRK00766 hypothetical protein; Provisional
Probab=62.99 E-value=15 Score=34.07 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHHHHHHH
Q 013458 357 NRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA 398 (442)
Q Consensus 357 ~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~~a~r~ 398 (442)
.+++.++..+++-.+|.- -++|.|+..||++|...
T Consensus 152 ~gi~l~~A~~lv~~~~~~-------~riPEPlR~Ahlia~~~ 186 (194)
T PRK00766 152 AGIDPETAAEIVRLTSTR-------SLIPEPLRLAHLIASGV 186 (194)
T ss_pred cCCCHHHHHHHHHHhccC-------CCCchhhHHHHHHHHHh
Confidence 468899999999988742 37999999999999544
No 29
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.59 E-value=47 Score=32.65 Aligned_cols=73 Identities=18% Similarity=0.178 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
.+.+.+++..+++++++..|.|+++...+.... |...|...+.+.||.+..+....- ....-+.+.+.++|.-
T Consensus 12 ~i~~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D 86 (282)
T PRK14169 12 KILADLKQTVAKLAQQDVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEA--TTQADLLAKVAELNHD 86 (282)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 344445554454443345788988888876655 999888888899999988876531 1233455777888863
No 30
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.26 E-value=58 Score=31.97 Aligned_cols=80 Identities=20% Similarity=0.178 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeeccc-ccccchhhHHHHHHHHHHhh-
Q 013458 62 QIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINVK- 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~-t~~k~~~~~~~ni~~kinaK- 136 (442)
.+.+.++.-.++.+++ +..|.|+++...+...+ |..+|.....+.||.+..+... .+ ...-+..++.++|..
T Consensus 14 ~i~~~~~~~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~~l~~~i~~Ln~d~ 90 (283)
T PRK14192 14 QIEEELSVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQET---TTEQLLAKIEELNANP 90 (283)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHHhCCC
Confidence 4444454444444432 45788988888876655 9999988889999999998874 22 233467888889875
Q ss_pred -cCCeeeee
Q 013458 137 -VGGRNTVL 144 (442)
Q Consensus 137 -lGG~n~~l 144 (442)
.-|++..+
T Consensus 91 ~v~Gi~Vql 99 (283)
T PRK14192 91 DVHGILLQH 99 (283)
T ss_pred CCCEEEEeC
Confidence 66777643
No 31
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.37 E-value=55 Score=32.37 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
.+.+.+++..+.++.+ +..|.|+++...+.... |...|...+.+.||.+..+....- ....-+...+.++|.-
T Consensus 13 ~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~e~~l~~~I~~lN~d 88 (294)
T PRK14187 13 DITEILATCIDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPST--ISESSLIEKINELNND 88 (294)
T ss_pred HHHHHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 3444454444444432 45788988888876655 998887788899999999887531 1234466777888854
No 32
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.16 E-value=51 Score=32.39 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhh-cCCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQ-QGKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~-~~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
++.+.++...+..+. ++..|.|+++...+...+ |...|.....+.||.+..+....- ....-+.+.+.++|.-
T Consensus 12 ~i~~~l~~~v~~l~~~~g~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~~l~~~I~~lN~D 87 (281)
T PRK14183 12 KIKENVKKEVDELKLVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPST--ISQKEILETIAMMNNN 87 (281)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 444455554444432 235788988888876554 999888888899999988876421 1233466777888843
No 33
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.09 E-value=52 Score=32.35 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
++.+.+++..++++++ +..|.|+++...+.... |...|...+.+.||.+..+....- ....-+.+++.++|.-
T Consensus 12 ~i~~~lk~~v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D 87 (282)
T PRK14180 12 DLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEH--TTESELLELIDQLNND 87 (282)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 4445555555554432 35788988888876555 988887778899999999876531 1234456777888844
No 34
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.99 E-value=51 Score=32.41 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
.+.+.++.-.+..++++..|.|+++...+...+ |...|...+.+.||.+..+....- ....-+.+.+.++|.-
T Consensus 14 ~i~~~l~~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~t~~el~~~I~~lN~D 88 (284)
T PRK14193 14 EIKADLAERVAALKEKGITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPAD--ATQEELNAVIDELNAD 88 (284)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 344444444444433345788988888876654 998888788899999998876531 1233455777888755
No 35
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.60 E-value=48 Score=32.76 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
.+.+.++.-.++.+++ +..|.|+++...+.... |...|...+.+.||.+..+....- ....-+.+.+.++|.-
T Consensus 12 ~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D 87 (293)
T PRK14185 12 QIKQEIAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESD--VTEEELLAKVRELNQD 87 (293)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 3444444444444433 46789988888876655 998888788899999998876531 1233455777788753
No 36
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.65 E-value=59 Score=32.06 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
++.+.+++-.++++.+ +..|.|+++...+.... |...|.....+.||.+..+....- ....-+.+.+.++|.-
T Consensus 13 ~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~~l~~~I~~LN~D 88 (288)
T PRK14171 13 EILADLKLEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTT--IHTNDLISKINELNLD 88 (288)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHcCC
Confidence 3344444444444333 45788888888776555 988877777899999998876531 2234466777777743
No 37
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.36 E-value=54 Score=32.20 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHh
Q 013458 62 QIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 135 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kina 135 (442)
++.+.+++-.+..++++..|.|+++...+...+ |...|...+.+.||.+-.+....- ....-+.+.+.++|.
T Consensus 12 ~i~~~ik~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~t~~~l~~~I~~lN~ 85 (282)
T PRK14182 12 KVKGEVATEVRALAARGVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPAT--TTQAELLALIARLNA 85 (282)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 444445554454444446788998888876655 988887778899999988876431 123345677777775
No 38
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=59.14 E-value=85 Score=34.16 Aligned_cols=108 Identities=21% Similarity=0.215 Sum_probs=59.3
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccc-eeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 013458 158 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 236 (442)
Q Consensus 158 ~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f 236 (442)
.|.-|-++|+||-.+ .-.|+++|.-.| +...+ .+-.+.... + .+|+ .+|.+++.+.+..+
T Consensus 374 ~p~rIE~fDiSh~~G----~~~V~s~Vvf~~-G~~~k~~YR~f~i~~-~---~dD~----------~~m~Evl~RR~~r~ 434 (577)
T PRK14668 374 RPERIEGFDVSHAQG----RAVVGSNVCFVD-GSAETADYRRKKLTE-R---NDDY----------ANMRELVRWRAERA 434 (577)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEEC-CccCHHHcCeecCCC-C---CChH----------HHHHHHHHHHHHhh
Confidence 467899999999763 346777777666 33222 222222222 1 2443 22345555444444
Q ss_pred HHh--cCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccc
Q 013458 237 RRS--TNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 300 (442)
Q Consensus 237 ~~~--~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~ 300 (442)
.+. .+.+|+=||| || +-||+. +..+++.+++- .+.+|...|+. .++|.
T Consensus 435 ~~~~~~~~~PDLili--DG-G~gQl~--------aa~~~l~elg~----~i~v~glaK~~-e~i~~ 484 (577)
T PRK14668 435 VEGRDDRPDPDLLLI--DG-GDGQLG--------AARDALAETGW----DVPAIALAKAE-ELVVT 484 (577)
T ss_pred hccccCCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CCcEEEEEcCC-eEEEc
Confidence 321 1258987776 66 456654 45778877742 46677777754 34443
No 39
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.11 E-value=56 Score=32.15 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
.+.+.++...++.++++..|.|+++...+.... |...|...+.+.||.+..+....- ....-+...+.++|.-
T Consensus 14 ~i~~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D 88 (284)
T PRK14190 14 EKREQLKEEVVKLKEQGIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPAD--ITEEELLALIDRLNAD 88 (284)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 344445444444443345788988888776554 988887778899999998876531 1233466777788865
No 40
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.85 E-value=58 Score=32.05 Aligned_cols=73 Identities=18% Similarity=0.248 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
++.+.++.-.++.+.++..|.|+++...+...+ |...|.....+.||.+-.+....- ....-+.+.+.++|.-
T Consensus 13 ~i~~~ik~~i~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D 87 (284)
T PRK14170 13 EIQEKVTREVAELVKEGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPEN--VTEEKLLSVVEELNED 87 (284)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 344444444444443345788888888776555 998888788899999988876531 1233455677788753
No 41
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.84 E-value=70 Score=31.51 Aligned_cols=74 Identities=18% Similarity=0.176 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 61 NQIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 61 ~~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
+.+.+.++.-.+..+++ +..|.|+++.+.+.... |...|...+.+.||.+-.+....- ....-+.+.+.++|.-
T Consensus 18 ~~i~~~l~~~i~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~LN~D 94 (287)
T PRK14176 18 KKIEAEVRSGVERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPAD--TTQEELLELIDSLNKR 94 (287)
T ss_pred HHHHHHHHHHHHHHHhccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 34444555544444433 45789988888876655 998888888899999988876531 2234566778888854
No 42
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.60 E-value=68 Score=31.77 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
.+.+.+++..++.++.+..|.|+++...+.... |...|...+.+.||.+-.+....- ....-+.+.+.++|.-
T Consensus 13 ~i~~~l~~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D 87 (297)
T PRK14167 13 QIRDDLTDAIETLEDAGVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPD--APAEELYDTIDELNAD 87 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 344444444444443345788988888776555 988888888899999988876531 1233466777888754
No 43
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.83 E-value=74 Score=31.34 Aligned_cols=72 Identities=19% Similarity=0.275 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHh
Q 013458 62 QIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 135 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kina 135 (442)
.+.+.+++..+..+.+ +..|.|+++...+...+ |...|...+.+.||.+..+.... .....-+.+.+.++|.
T Consensus 12 ~i~~~l~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~~l~~~I~~lN~ 86 (286)
T PRK14184 12 TIREELKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPA--DTTQEELEDLIAELNA 86 (286)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhC
Confidence 3344444444444332 45788888888776655 98888777889999999887653 1223446677788885
No 44
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.64 E-value=69 Score=31.69 Aligned_cols=73 Identities=18% Similarity=0.173 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
.+.+.++...++.+++ +..|.|+++.+.+.... |...|...+.+.||.+-.+....- ....-+.+.+.++|.-
T Consensus 12 ~i~~~i~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D 87 (295)
T PRK14174 12 DLKNELKTRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPAD--TTEEHLLKKIEDLNND 87 (295)
T ss_pred HHHHHHHHHHHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 3444444444444332 35788988888877655 999888888899999988876531 1233456777888754
No 45
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.99 E-value=67 Score=31.62 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHh
Q 013458 62 QIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 135 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kina 135 (442)
.+.+.+++..+.+++++..|.|+++...+.... |...|...+.+.||.+-.+....- ....-+.+.+.++|.
T Consensus 14 ~i~~~~~~~v~~l~~~g~~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 14 DYRQGLQDQVEALKEKGFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEET--ATEEEVLNELNRLNN 87 (286)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 344444444444433345788888888876555 998888788899999988876531 123445567778874
No 46
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.92 E-value=76 Score=31.42 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
.+.+.+++..++.+.+ +..|.|+++...+.... |...|...+.+.||.+-.+....- ....-+.+++.++|.-
T Consensus 13 ~i~~~i~~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~i~~lN~d 88 (296)
T PRK14188 13 DVRATVAAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPAD--TSQAELLALIARLNAD 88 (296)
T ss_pred HHHHHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 3444444444444332 35788988888876655 998887778899999888765421 1233455788888865
No 47
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.83 E-value=81 Score=31.05 Aligned_cols=72 Identities=18% Similarity=0.114 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHh
Q 013458 62 QIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 135 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kina 135 (442)
.+.+.+++-.++.++++..|.|+++...+.... |...|...+.+.||.+-.+.... .....-+.+.+.++|.
T Consensus 14 ~i~~~lk~~i~~l~~~g~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 14 QLRAEAAQRAAALTARGHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPA--DLSEAELLARIDELNR 87 (285)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHcC
Confidence 444445444444443345788988888776655 98888777889999998887653 1223445577777775
No 48
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=54.28 E-value=82 Score=31.24 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
.+.+.+++..++.+++ +..|.|+++...+.... |...|...+.+.||.+-.+.... .....-+...+.++|.-
T Consensus 20 ~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~s~~el~~~I~~lN~D 95 (299)
T PLN02516 20 AIRSEIAEEVAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPE--NISEAELISKVHELNAN 95 (299)
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 3444444444444332 45788988888776554 99888777889999998887642 11233455777778754
No 49
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.27 E-value=72 Score=31.40 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
.+.+.+++-.++++.+ +..|.|+++...+.... |...|...+.+.||.+..+.... .....-+...+.++|.-
T Consensus 14 ~i~~~lk~~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~s~~el~~~I~~lN~d 89 (285)
T PRK10792 14 QVRSEVAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPE--TTSEAELLALIDELNAD 89 (285)
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 4444555544544432 34688888887776554 99888878889999999987752 11234455777888865
No 50
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.40 E-value=79 Score=31.33 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhhc-
Q 013458 62 QIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKV- 137 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaKl- 137 (442)
.+.+.++...+..+++ +..|.|+++...+.... |...|...+.+.||.+-.+.... .....-+.+++.++|.--
T Consensus 13 ~i~~~lk~~v~~l~~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D~~ 90 (297)
T PRK14186 13 EIEQRLQAQIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPA--DTSQAEVEALIAQLNQDER 90 (297)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCCCC
Confidence 3444444444443332 45688888888776554 98888778889999999887642 122344667788888643
Q ss_pred -CCee
Q 013458 138 -GGRN 141 (442)
Q Consensus 138 -GG~n 141 (442)
-|+-
T Consensus 91 V~GIi 95 (297)
T PRK14186 91 VDGIL 95 (297)
T ss_pred CCEEE
Confidence 4543
No 51
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=52.97 E-value=80 Score=31.93 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 61 NQIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 61 ~~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
+.+.+.++...++.+.+ +..|.|+++.+.+.... |...|...+.+.||.+..+....- ....-+...+.++|.-
T Consensus 66 ~~i~~~lk~~v~~l~~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~--~te~ell~~I~~lN~D 142 (345)
T PLN02897 66 EEIRTKIASEVRKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPED--CTEGQILSALRKFNED 142 (345)
T ss_pred HHHHHHHHHHHHHHHhccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 44445555544444433 45688988888877655 998888888899999998876531 1233455777888754
No 52
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.66 E-value=81 Score=31.23 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
.+.+.++.-.++.+++ +..|.|+++...+.... |...|...+.+.||.+-.+.... .....-+...+.++|.-
T Consensus 14 ~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~t~~el~~~I~~lN~D 89 (297)
T PRK14168 14 EILEEIRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSV--DITEEELLALIDKYNND 89 (297)
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 3444454444444433 45788988888776555 99998888889999998776542 11234455677788753
No 53
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=52.11 E-value=86 Score=31.92 Aligned_cols=73 Identities=19% Similarity=0.156 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHh
Q 013458 61 NQIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 135 (442)
Q Consensus 61 ~~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kina 135 (442)
+.+.+.++.-.++.+++ +..|.|+++.+.+.... |...|...+.+.||.+..+.... .....-+.+.+.++|.
T Consensus 83 ~~i~~~lk~~v~~lk~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe--~~te~ell~~I~~LN~ 158 (364)
T PLN02616 83 KKIRDEITIEVSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPE--DSTEQEVLKFISGFNN 158 (364)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHcC
Confidence 34444444444444433 45688999888877655 99888777889999998886542 1123445677778874
No 54
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.02 E-value=1e+02 Score=30.24 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHhhcC-CCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 61 NQIEKALVDVHNRTAQQG-KQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~-~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
+++.+.|+...++.+.++ ..|.|+++...+.... |...|...+.+.||.+..+....- ....-+.+.+.++|.-
T Consensus 12 ~~i~~~lk~~i~~l~~~g~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~d 88 (278)
T PRK14172 12 LKIKEEIKNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDES--ISEEDLINEIEELNKD 88 (278)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 344455555555444322 3588888888876655 988887777899999988876531 1223455777888754
No 55
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.93 E-value=1.1e+02 Score=30.18 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHh--
Q 013458 61 NQIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV-- 135 (442)
Q Consensus 61 ~~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kina-- 135 (442)
+.+.+.+++..++.+++ +..|.|+++...+.... |...|...+.+.||.+..+....- ....-+.+.+.++|.
T Consensus 13 ~~i~~~lk~~i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~s~~el~~~I~~lN~D~ 90 (284)
T PRK14177 13 EKIRNEIRETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQ--TTTEELLGVIDKLNLDP 90 (284)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCCC
Confidence 34444555444554432 34588988888776554 988887777899999999886531 234456678888886
Q ss_pred hcCCee
Q 013458 136 KVGGRN 141 (442)
Q Consensus 136 KlGG~n 141 (442)
..-|+-
T Consensus 91 ~V~GIl 96 (284)
T PRK14177 91 NVDGIL 96 (284)
T ss_pred CCCeEE
Confidence 344554
No 56
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.42 E-value=1.2e+02 Score=29.97 Aligned_cols=73 Identities=15% Similarity=0.251 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
.+.+.+++..++.+++ +..|.|+++...+...+ |...|...+.+.||.+-.+....- ....-+.+.+.++|.-
T Consensus 13 ~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~~l~~~I~~lN~d 88 (284)
T PRK14179 13 KMQAELAEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPET--ISQEELLDLIERYNQD 88 (284)
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 3444444444444332 35688988888876655 998887777899999988876531 2234556788888854
No 57
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=47.91 E-value=12 Score=31.91 Aligned_cols=31 Identities=23% Similarity=0.121 Sum_probs=22.1
Q ss_pred hccCcCCCCcccccchHHHHHHHHHHhhhhc
Q 013458 373 YTYARCTRSVSIVPPAYYAHLAAFRARYYIE 403 (442)
Q Consensus 373 ~~~~~~~~~islPapl~yA~~~a~r~~~~~~ 403 (442)
|.|+-.-.+--+|.|+++||++++|......
T Consensus 12 fGYA~~ET~~~MPl~i~lAh~L~~~l~~~R~ 42 (120)
T PF02772_consen 12 FGYACDETPELMPLPIVLAHRLARRLAEVRK 42 (120)
T ss_dssp EEEEETTSTTSS-HHHHHHHHHHHHHHHHHH
T ss_pred EeeEcCCCCccCChHHHHHHHHHHHHHHHHh
Confidence 3444445667799999999999988876544
No 58
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.98 E-value=1.2e+02 Score=29.96 Aligned_cols=73 Identities=19% Similarity=0.228 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
.+.+.|++..++.+++ +..|.|+++..-+...+ |...|...+.+.||.+-.+....- ....-+.+.+.++|.-
T Consensus 12 ~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D 87 (285)
T PRK14191 12 KIEKDLKNKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQEN--TTEAELLSLIKDLNTD 87 (285)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 3444444444444332 45788888887776554 998888888899999988876531 1234466778888854
No 59
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=45.89 E-value=24 Score=22.66 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEE
Q 013458 226 GGMIRELLIAFRRSTNFKPHRIIF 249 (442)
Q Consensus 226 ~~~~~~~L~~f~~~~g~~P~~IIi 249 (442)
.+|. ..+..|.+.||++|..|-|
T Consensus 11 ~d~a-~rv~~f~~~ngRlPnyV~i 33 (33)
T PF09373_consen 11 LDMA-SRVNNFYESNGRLPNYVSI 33 (33)
T ss_pred HHHH-HHHHHHHHHcCCCCCeeeC
Confidence 3443 4678899999999998753
No 60
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=45.09 E-value=1.8e+02 Score=31.66 Aligned_cols=107 Identities=21% Similarity=0.239 Sum_probs=54.2
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccc-eeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 013458 158 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 236 (442)
Q Consensus 158 ~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f 236 (442)
.+.-|-++|+||-.. .-.++++|-..| +...+ .+-.+.... +-.+|. .+|.+++.+ .|
T Consensus 378 ~p~rIE~~D~Sh~~g----~~~V~smvvf~~-g~~~k~~YRry~i~~---~~~dDy----------a~m~evl~R---R~ 436 (581)
T COG0322 378 APYRIECFDISHIQG----EDTVGSMVVFED-GGPSKKDYRRYNIKI---TGGDDY----------ASMREVLTR---RY 436 (581)
T ss_pred CceeEEEeecCcccc----ccceeEEEEEcC-CCCChhhcccccccC---CCCchH----------HHHHHHHHH---Hh
Confidence 467899999999863 345555555445 22211 111111110 002232 122344433 34
Q ss_pred HHhc-CCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccc
Q 013458 237 RRST-NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 300 (442)
Q Consensus 237 ~~~~-g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~ 300 (442)
.+.- ..+|+=|+| || +.||+. +.++++.+++-. .+ +|.+.|+-..-|++
T Consensus 437 ~~~~~~~~Pdli~i--DG-GkgQl~--------~a~~vl~~l~~~--~~--viglaK~~~~~~~~ 486 (581)
T COG0322 437 SRLLKEELPDLILI--DG-GKGQLN--------AAKEVLKELGLD--IP--VIGLAKGEEELLLP 486 (581)
T ss_pred hhccccCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCCC--cc--EEEEEecCceeEec
Confidence 3322 279965555 55 456654 457778777332 22 78888876633333
No 61
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.00 E-value=1.5e+02 Score=29.07 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=41.4
Q ss_pred CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 78 GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 78 ~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
+..|.|+++...+...+ |...|...+.+.||.+..+....- ....-+...+.++|.-
T Consensus 24 g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D 82 (279)
T PRK14178 24 GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGD--ATTRTVLERIRRLNED 82 (279)
T ss_pred CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 36788988888876655 998887788899999998876531 1234455777788754
No 62
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=41.96 E-value=1.1e+02 Score=28.40 Aligned_cols=81 Identities=10% Similarity=0.085 Sum_probs=52.8
Q ss_pred CCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCChhhHHHHHhhh
Q 013458 25 NRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCET 104 (442)
Q Consensus 25 ~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~Y~~iK~~~~~ 104 (442)
+..-+..+.+.+.+.++++|+.+.-- . ......+...+.++++.. .++|.|++...+....+..+++. .
T Consensus 9 ~~~~~~~~~~g~~~~a~~~g~~~~~~--~-~~~~d~~~q~~~i~~~i~------~~~d~Iiv~~~~~~~~~~~l~~~--~ 77 (257)
T PF13407_consen 9 DNPFWQQVIKGAKAAAKELGYEVEIV--F-DAQNDPEEQIEQIEQAIS------QGVDGIIVSPVDPDSLAPFLEKA--K 77 (257)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCEEEEE--E-ESTTTHHHHHHHHHHHHH------TTESEEEEESSSTTTTHHHHHHH--H
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEe--C-CCCCCHHHHHHHHHHHHH------hcCCEEEecCCCHHHHHHHHHHH--h
Confidence 45578889999999999999997431 1 122233444445555544 57997776555543348888874 4
Q ss_pred hcCceeeeeccc
Q 013458 105 ELGIVSQCCQPR 116 (442)
Q Consensus 105 ~~gI~TQ~i~~~ 116 (442)
..|||.-.+...
T Consensus 78 ~~gIpvv~~d~~ 89 (257)
T PF13407_consen 78 AAGIPVVTVDSD 89 (257)
T ss_dssp HTTSEEEEESST
T ss_pred hcCceEEEEecc
Confidence 668888777655
No 63
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=41.25 E-value=1.5e+02 Score=29.14 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhh-cCCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHh
Q 013458 62 QIEKALVDVHNRTAQ-QGKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 135 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~-~~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kina 135 (442)
.+...|++..++.++ .+..|.|+++...+.... |-..|...+.+.|+-+.....+. .....-+.+++.++|.
T Consensus 11 ~i~~~lk~~v~~~~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~--~~t~~eLl~~I~~lN~ 85 (283)
T COG0190 11 KIREELKEKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPE--DITEEELLALIDELNA 85 (283)
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCC--cCCHHHHHHHHHHhcC
Confidence 444455555554443 245789999988887654 99999888889999999998752 1234566777888874
No 64
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.50 E-value=1.3e+02 Score=29.63 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=41.1
Q ss_pred CCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 79 KQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 79 ~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
..|.|+++...+.... |...|...+.+.||.+..+....- ....-+.+.+.++|.-
T Consensus 28 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D 85 (287)
T PRK14173 28 FVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPES--TSQEELLELIARLNAD 85 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 5688888888876655 998888888899999998876531 1233466777888864
No 65
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=37.84 E-value=1.2e+02 Score=30.35 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=52.5
Q ss_pred ccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeCC
Q 013458 11 RVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPD 90 (442)
Q Consensus 11 ~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~ 90 (442)
..++|++++.+ ..--..+.+.+.+.+++.|+++.....+.. ...++...+.++.. .+||.|++....
T Consensus 139 ~~~kvaiv~~~----~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~---~~~D~~~~v~~i~~------~~pd~V~~~~~~ 205 (351)
T cd06334 139 KGKKIALVYHD----SPFGKEPIEALKALAEKLGFEVVLEPVPPP---GPNDQKAQWLQIRR------SGPDYVILWGWG 205 (351)
T ss_pred CCCeEEEEeCC----CccchhhHHHHHHHHHHcCCeeeeeccCCC---CcccHHHHHHHHHH------cCCCEEEEeccc
Confidence 47899998643 233455666677778888998754433322 23466667766655 579988776555
Q ss_pred CCChhhHHHHHhhhhcCceeeee
Q 013458 91 VSGSYGRIKRVCETELGIVSQCC 113 (442)
Q Consensus 91 ~~~~Y~~iK~~~~~~~gI~TQ~i 113 (442)
.. .-.-+|.+ ...|+..+.+
T Consensus 206 ~~-~~~~~~~~--~~~G~~~~~~ 225 (351)
T cd06334 206 VM-NPVAIKEA--KRVGLDDKFI 225 (351)
T ss_pred ch-HHHHHHHH--HHcCCCceEE
Confidence 32 24556654 3456644444
No 66
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.67 E-value=1.8e+02 Score=28.70 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=41.2
Q ss_pred CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHh
Q 013458 78 GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 135 (442)
Q Consensus 78 ~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kina 135 (442)
+..|.|+++...+.... |...|...+.+.||.+..+....- ....-+..++.++|.
T Consensus 24 ~~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~t~~el~~~I~~lN~ 81 (287)
T PRK14181 24 STAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSD--ATLSDILKLIHRLNN 81 (287)
T ss_pred CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 35788988888876655 999998888999999998876431 123345577788874
No 67
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=34.76 E-value=3.2e+02 Score=28.90 Aligned_cols=96 Identities=19% Similarity=0.331 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHhhcCcccCCCCee-ccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCC--h-h-hHHHHHhh
Q 013458 29 PFQFCQGLVDMCNSKGMVFNPRPVI-PISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSG--S-Y-GRIKRVCE 103 (442)
Q Consensus 29 ~~~f~~~L~~~~~~~Gi~i~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~--~-Y-~~iK~~~~ 103 (442)
..+.++.+++.+.+.||.+-. ++ .+. ..+..+..+ +..+..+..+++.++.+-+... + | +..|.+
T Consensus 103 pddvv~~fv~~a~~~Gidi~R--ifd~ln--d~~n~~~ai----~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l-- 172 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFR--IFDALN--DPRNIQQAL----RAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKEL-- 172 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEE--EcccCC--CHHHHHHHH----HHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHH--
Confidence 345666667777888888621 11 111 123333333 3333334556666666544322 2 3 334433
Q ss_pred hhcCceeeeecccccccchhhHHHHHHHHHHh
Q 013458 104 TELGIVSQCCQPRQASRLNMQYFENVALKINV 135 (442)
Q Consensus 104 ~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kina 135 (442)
.+.|+-+-||. ++.--..+..+..++..+-.
T Consensus 173 ~~~Gad~I~Ik-DtaG~l~P~~v~~Lv~alk~ 203 (468)
T PRK12581 173 VEMGADSICIK-DMAGILTPKAAKELVSGIKA 203 (468)
T ss_pred HHcCCCEEEEC-CCCCCcCHHHHHHHHHHHHh
Confidence 35687766665 44444456666677766643
No 68
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=34.64 E-value=2.6e+02 Score=25.38 Aligned_cols=68 Identities=15% Similarity=0.286 Sum_probs=41.1
Q ss_pred CCccchhHHHHHHHHHHHHhc---CCCC--ceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEee
Q 013458 220 QRGLVHGGMIRELLIAFRRST---NFKP--HRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQK 292 (442)
Q Consensus 220 ~~~~~~~~~~~~~L~~f~~~~---g~~P--~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K 292 (442)
.-.+.+...+..+++.|.... ...| ..|||.-||...+.- .+ .+.|.++..++....+..+.+|.+-.
T Consensus 79 ~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~-~~----~~~i~~a~~~l~~~~~i~i~~v~vG~ 151 (199)
T cd01457 79 DGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKD-AV----ERVIIKASDELDADNELAISFLQIGR 151 (199)
T ss_pred CCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHH-HH----HHHHHHHHHhhccccCceEEEEEeCC
Confidence 334556777787877776532 2344 899999999886421 11 24556666665444345566666643
No 69
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
Probab=32.75 E-value=30 Score=34.77 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=25.8
Q ss_pred hhhccCcCCCCcccccchHHHHHHHHHHhhhhc
Q 013458 371 LCYTYARCTRSVSIVPPAYYAHLAAFRARYYIE 403 (442)
Q Consensus 371 Lc~~~~~~~~~islPapl~yA~~~a~r~~~~~~ 403 (442)
+-|.|...-.+.-+|+|++|||++++|...+..
T Consensus 125 imFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk 157 (388)
T COG0192 125 IMFGYACNETPELMPLPISLAHRLLRRLAEVRK 157 (388)
T ss_pred eEeeeecCCcccccChHHHHHHHHHHHHHHHHh
Confidence 345566666778899999999999999887544
No 70
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=31.08 E-value=44 Score=30.72 Aligned_cols=37 Identities=19% Similarity=0.119 Sum_probs=25.4
Q ss_pred ecCCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHHHHHH
Q 013458 354 YDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFR 397 (442)
Q Consensus 354 ~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~~a~r 397 (442)
....+++.++..++...++. --++|.||..||++|+-
T Consensus 144 v~~~Gi~~~~A~~li~~~t~-------~g~iPEPLRvAhliA~~ 180 (187)
T PF01949_consen 144 VQSWGIDLEEARELIRRTTL-------HGKIPEPLRVAHLIASA 180 (187)
T ss_dssp EEEESS-HHHHHHHHHHC-S-------SSSS-HHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHhc-------cCCCcccHHHHHHHHHH
Confidence 33446888898888776642 23799999999999954
No 71
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=30.05 E-value=1.5e+02 Score=30.26 Aligned_cols=9 Identities=0% Similarity=0.080 Sum_probs=5.5
Q ss_pred HHHHHHHhh
Q 013458 269 AIRQACASL 277 (442)
Q Consensus 269 ~i~~a~~~~ 277 (442)
.|++++.+.
T Consensus 344 ~l~~~L~~~ 352 (410)
T cd06363 344 QLLEELKKV 352 (410)
T ss_pred HHHHHHhcc
Confidence 467777653
No 72
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.90 E-value=1.4e+02 Score=23.80 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=29.9
Q ss_pred CCceEEEEEeCCCCCh-hhHHHHHhhhhcCceeeeecccc
Q 013458 79 KQLQMLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQ 117 (442)
Q Consensus 79 ~~~~~vlvilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t 117 (442)
.++|+|||++.--+-. +..+|+.| .+.|+|.-......
T Consensus 47 ~~aD~VIv~t~~vsH~~~~~vk~~a-kk~~ip~~~~~~~~ 85 (97)
T PF10087_consen 47 KKADLVIVFTDYVSHNAMWKVKKAA-KKYGIPIIYSRSRG 85 (97)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHH-HHcCCcEEEECCCC
Confidence 4689999998876655 88999876 78899987776443
No 73
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=27.86 E-value=3.8e+02 Score=29.37 Aligned_cols=106 Identities=13% Similarity=0.076 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCC--h-hh-HHHHHhhh
Q 013458 29 PFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSG--S-YG-RIKRVCET 104 (442)
Q Consensus 29 ~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~--~-Y~-~iK~~~~~ 104 (442)
.++.++.+.+.+.+.||.+-. -+-.+.+ .+..+..++ ..++.+...+-.+|.+-+..- + |. ..|.+ .
T Consensus 94 ~d~vv~~~v~~a~~~Gidv~R-ifd~lnd--~~n~~~~i~----~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l--~ 164 (596)
T PRK14042 94 ADDVVRAFVKLAVNNGVDVFR-VFDALND--ARNLKVAID----AIKSHKKHAQGAICYTTSPVHTLDNFLELGKKL--A 164 (596)
T ss_pred ChHHHHHHHHHHHHcCCCEEE-EcccCcc--hHHHHHHHH----HHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHH--H
Confidence 456666677777778888621 1111111 223333333 333334566666666554321 2 33 33332 4
Q ss_pred hcCceeeeecccccccchhhHHHHHHHHHHhhcCCeeeeec
Q 013458 105 ELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLV 145 (442)
Q Consensus 105 ~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaKlGG~n~~l~ 145 (442)
+.|+-+-||. ++.--..+..+..++..+-.++| ++..+.
T Consensus 165 ~~Gad~I~Ik-DtaG~l~P~~v~~lv~alk~~~~-ipi~~H 203 (596)
T PRK14042 165 EMGCDSIAIK-DMAGLLTPTVTVELYAGLKQATG-LPVHLH 203 (596)
T ss_pred HcCCCEEEeC-CcccCCCHHHHHHHHHHHHhhcC-CEEEEE
Confidence 5787665555 55544567777788888877774 665544
No 74
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=26.24 E-value=1.7e+02 Score=28.43 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=9.2
Q ss_pred HHHHHHHHhcCCCCc
Q 013458 231 ELLIAFRRSTNFKPH 245 (442)
Q Consensus 231 ~~L~~f~~~~g~~P~ 245 (442)
+..+.|++..|..|.
T Consensus 258 ~f~~~~~~~~g~~p~ 272 (312)
T cd06346 258 AFTSAYKAAYGESPS 272 (312)
T ss_pred HHHHHHHHHhCCCCC
Confidence 345667776666554
No 75
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=25.29 E-value=3.2e+02 Score=26.31 Aligned_cols=54 Identities=13% Similarity=0.267 Sum_probs=32.0
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh-hhHHHHHhhhhcCceeeeeccccc
Q 013458 59 NPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQA 118 (442)
Q Consensus 59 ~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~ 118 (442)
++++++......++++ +|||+++|.|+...- =..-+. .....|||+-+|...--
T Consensus 43 ~pe~~e~~~~~~~~~~-----~pdf~I~isPN~~~PGP~~ARE-~l~~~~iP~IvI~D~p~ 97 (276)
T PF01993_consen 43 GPEDVEEVVTKMLKEW-----DPDFVIVISPNAAAPGPTKARE-MLSAKGIPCIVISDAPT 97 (276)
T ss_dssp SHHHHHHHHHHHHHHH-------SEEEEE-S-TTSHHHHHHHH-HHHHSSS-EEEEEEGGG
T ss_pred CHHHHHHHHHHHHHhh-----CCCEEEEECCCCCCCCcHHHHH-HHHhCCCCEEEEcCCCc
Confidence 4677777776666654 699999999987543 222222 22458999999987543
No 76
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=25.14 E-value=3.1e+02 Score=27.03 Aligned_cols=89 Identities=8% Similarity=0.011 Sum_probs=48.4
Q ss_pred ccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeCC
Q 013458 11 RVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPD 90 (442)
Q Consensus 11 ~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~ 90 (442)
..++|++++.+ ...-+...+.+.+.+++.|+++...-.+.. ...++...+.++.+ .+++.|++....
T Consensus 137 ~~~~v~il~~d----~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~---~~~D~s~~i~~i~~------~~~d~v~~~~~~ 203 (347)
T cd06336 137 GGKKVALLGPN----DAYGQPWVAAYKAAWEAAGGKVVSEEPYDP---GTTDFSPIVTKLLA------EKPDVIFLGGPS 203 (347)
T ss_pred CCceEEEEccC----CchhHHHHHHHHHHHHHcCCEEeeecccCC---CCcchHHHHHHHHh------cCCCEEEEcCCC
Confidence 45777877543 233445566667777778887754322222 23456666666654 468877666554
Q ss_pred CCChhhHHHHHhhhhcCceeeeec
Q 013458 91 VSGSYGRIKRVCETELGIVSQCCQ 114 (442)
Q Consensus 91 ~~~~Y~~iK~~~~~~~gI~TQ~i~ 114 (442)
......-+|.+ ...|+-.+.+.
T Consensus 204 ~~~~~~~~~~~--~~~g~~~~~~~ 225 (347)
T cd06336 204 PAPAALVIKQA--RELGFKGGFLS 225 (347)
T ss_pred chHHHHHHHHH--HHcCCCccEEe
Confidence 31225555543 23455444443
No 77
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=24.97 E-value=4.1e+02 Score=22.14 Aligned_cols=68 Identities=6% Similarity=0.155 Sum_probs=37.1
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeCCC
Q 013458 14 VWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDV 91 (442)
Q Consensus 14 ~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~ 91 (442)
.-++|.+. ++.....+++...+.|++.||.+....+ -.+...+++.+.++.+-+ ...++=+++.+|=.
T Consensus 31 ~Laii~vg---~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l--~~~~~~~el~~~i~~lN~-----D~~V~GIlvq~PLP 98 (117)
T PF00763_consen 31 KLAIILVG---DDPASISYVRSKQKAAEKLGIEFELIEL--PEDISEEELLELIEKLNE-----DPSVHGILVQLPLP 98 (117)
T ss_dssp EEEEEEES-----HHHHHHHHHHHHHHHHHT-EEEEEEE---TTSSHHHHHHHHHHHHH------TT-SEEEEESSSS
T ss_pred EEEEEecC---CChhHHHHHHHHHHHHHHcCCceEEEEC--CCCcCHHHHHHHHHHHhC-----CCCCCEEEEcCCCC
Confidence 34555443 3456777888888888888888743211 123345555555544433 25677777776653
No 78
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=23.50 E-value=5.6e+02 Score=25.19 Aligned_cols=93 Identities=15% Similarity=0.071 Sum_probs=54.7
Q ss_pred CcccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEe
Q 013458 9 GGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIIL 88 (442)
Q Consensus 9 ~~~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvil 88 (442)
+++.+.|.+.......+..-+..+++.+.+.+++.|+.+.- .. ...+++...+.++.+.+ .++|-+++.
T Consensus 20 ~~~~~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i---~~-~~~~~~~~~~~i~~l~~------~~vDGiIi~- 88 (330)
T PRK10355 20 AAHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFV---QS-ANGNEETQMSQIENMIN------RGVDVLVII- 88 (330)
T ss_pred cccCCCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEE---EC-CCCCHHHHHHHHHHHHH------cCCCEEEEe-
Confidence 34456776654444567778999999999999999988632 11 11233333444444443 578877664
Q ss_pred CCCCCh-hhHHHHHhhhhcCceeeeec
Q 013458 89 PDVSGS-YGRIKRVCETELGIVSQCCQ 114 (442)
Q Consensus 89 p~~~~~-Y~~iK~~~~~~~gI~TQ~i~ 114 (442)
+..... =..++.+ .+.|||.-.+.
T Consensus 89 ~~~~~~~~~~l~~~--~~~~iPvV~id 113 (330)
T PRK10355 89 PYNGQVLSNVIKEA--KQEGIKVLAYD 113 (330)
T ss_pred CCChhhHHHHHHHH--HHCCCeEEEEC
Confidence 432221 1335543 35677776664
No 79
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=23.44 E-value=1.3e+02 Score=28.32 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=28.5
Q ss_pred CCCceEEEEEeCCCCCh-hhHHHHHhhhhcCceeeeeccc
Q 013458 78 GKQLQMLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPR 116 (442)
Q Consensus 78 ~~~~~~vlvilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~ 116 (442)
++-+.++++--.++... |+.||+ ..+.|..|-|++.=
T Consensus 129 GetVSiv~ftd~wrP~SfydkI~~--Nr~~glHTLcLLDI 166 (272)
T KOG3123|consen 129 GETVSIVFFTDNWRPESFYDKIKE--NRQLGLHTLCLLDI 166 (272)
T ss_pred CcEEEEEEEccCcCchhHHHHHHH--hhhcCceeEEEEEE
Confidence 45667666666666666 999996 78999999999864
No 80
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=23.36 E-value=4e+02 Score=26.11 Aligned_cols=17 Identities=6% Similarity=-0.003 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhcCccc
Q 013458 31 QFCQGLVDMCNSKGMVF 47 (442)
Q Consensus 31 ~f~~~L~~~~~~~Gi~i 47 (442)
.+.+.+.+.+++.|+++
T Consensus 151 ~~~~~~~~~~~~~G~~v 167 (333)
T cd06328 151 DGVAAFKAALEKLGAAI 167 (333)
T ss_pred HHHHHHHHHHHhCCCEE
Confidence 33344444444555554
No 81
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=23.09 E-value=2.5e+02 Score=27.37 Aligned_cols=64 Identities=8% Similarity=0.136 Sum_probs=34.8
Q ss_pred cCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEe
Q 013458 12 VEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIIL 88 (442)
Q Consensus 12 l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvil 88 (442)
.++|++++. +...-+.+.+.+.+.+++.|.++.....+.. ...++...+.++.+ .++|.|++..
T Consensus 135 ~~~v~~i~~----~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~---~~~d~~~~v~~l~~------~~~d~v~~~~ 198 (334)
T cd06327 135 GKKWFFLTA----DYAFGHSLERDARKVVKANGGKVVGSVRHPL---GTSDFSSYLLQAQA------SGADVLVLAN 198 (334)
T ss_pred CCeEEEEec----chHHhHHHHHHHHHHHHhcCCEEcCcccCCC---CCccHHHHHHHHHh------CCCCEEEEec
Confidence 467776642 2334456667777777777777654332222 12345555555533 4577655544
No 82
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=22.83 E-value=1.6e+02 Score=24.12 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCChhhHHHHHhhhhcCce
Q 013458 30 FQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIV 109 (442)
Q Consensus 30 ~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~Y~~iK~~~~~~~gI~ 109 (442)
.-+.+.+.+.+++.|+++. +. ..+..++++ .. .+.| ++++.|.-.-.++.+|+.++ ..|||
T Consensus 14 s~la~km~~~a~~~gi~~~---i~---a~~~~e~~~-------~~----~~~D-vill~PQv~~~~~~i~~~~~-~~~ip 74 (99)
T cd05565 14 GLLANALNKGAKERGVPLE---AA---AGAYGSHYD-------MI----PDYD-LVILAPQMASYYDELKKDTD-RLGIK 74 (99)
T ss_pred HHHHHHHHHHHHHCCCcEE---EE---EeeHHHHHH-------hc----cCCC-EEEEcChHHHHHHHHHHHhh-hcCCC
Confidence 4566899999999999763 11 112222222 11 3567 56677765444889998764 67999
Q ss_pred eeeecccc
Q 013458 110 SQCCQPRQ 117 (442)
Q Consensus 110 TQ~i~~~t 117 (442)
.-.|....
T Consensus 75 v~~I~~~~ 82 (99)
T cd05565 75 LVTTTGKQ 82 (99)
T ss_pred EEEeCHHH
Confidence 98887654
No 83
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=22.80 E-value=2.6e+02 Score=27.35 Aligned_cols=86 Identities=7% Similarity=0.059 Sum_probs=49.9
Q ss_pred cCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeCCC
Q 013458 12 VEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDV 91 (442)
Q Consensus 12 l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~ 91 (442)
.++|++++.+ ......+.+.+.+.+++.|+++.....+.. ...++...+.++.+ .+++.|++.....
T Consensus 141 ~~~v~~v~~~----~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~---~~~d~~~~v~~l~~------~~~d~i~~~~~~~ 207 (345)
T cd06338 141 PKKVAILYAD----DPFSQDVAEGAREKAEAAGLEVVYDETYPP---GTADLSPLISKAKA------AGPDAVVVAGHFP 207 (345)
T ss_pred CceEEEEecC----CcccHHHHHHHHHHHHHcCCEEEEEeccCC---CccchHHHHHHHHh------cCCCEEEECCcch
Confidence 5677777532 334456677788888889998754222211 23456666666644 5688776655442
Q ss_pred CChhhHHHHHhhhhcCceeeee
Q 013458 92 SGSYGRIKRVCETELGIVSQCC 113 (442)
Q Consensus 92 ~~~Y~~iK~~~~~~~gI~TQ~i 113 (442)
....-+|.+. ..|+....+
T Consensus 208 -~~~~~~~~~~--~~g~~~~~~ 226 (345)
T cd06338 208 -DAVLLVRQMK--ELGYNPKAL 226 (345)
T ss_pred -hHHHHHHHHH--HcCCCCCEE
Confidence 2266676543 445544333
No 84
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=22.47 E-value=1.3e+02 Score=25.09 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=31.2
Q ss_pred CCCcccCcccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccC
Q 013458 3 NKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFN 48 (442)
Q Consensus 3 ~~~f~~~~~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~ 48 (442)
+-||+.+.+-.-=+..... +.+.|++|.+-+.+.+.+.|+...
T Consensus 67 ~~KFvnGkp~~iEa~y~m~---s~~~WdRFMRFMeRYA~~ngl~f~ 109 (111)
T PLN00039 67 SAKFVNGKPAGIEAKYVMR---SPREWDRFMRFMERYAEENGLGFV 109 (111)
T ss_pred ceEEECCCccEEEEEEEEC---CHHHHHHHHHHHHHHHHhcCCccc
Confidence 4578887765522232222 578999999999999999998764
No 85
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=22.45 E-value=6.6e+02 Score=26.62 Aligned_cols=61 Identities=13% Similarity=0.269 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHh-cCCCCceEEEEecCCCchhHHHHHHH--------HHHHHHHHHHhhc--CCCCCCEE
Q 013458 226 GGMIRELLIAFRRS-TNFKPHRIIFYRDGVSEGQFSQVLLH--------EMNAIRQACASLE--EGYAPPVT 286 (442)
Q Consensus 226 ~~~~~~~L~~f~~~-~g~~P~~IIiyRdGvsegq~~~v~~~--------Ei~~i~~a~~~~~--~~~~p~it 286 (442)
.+.+++.-+.|..- .+.+--..-||+..++-|++.....+ -++.+.+.+.+.. -+|.|++|
T Consensus 266 ~~~~~~vr~~y~~~~~~~~~~~~~v~~~q~PGG~~snl~~Ql~~~g~~~~~~~v~~e~~~v~~~lG~~~~VT 337 (467)
T PRK14041 266 VEYFTKVREKYSEYDVGMKSPDSRILVSQIPGGMYSNLVKQLKEQKMLHKLDKVLEEVPRVRKDLGYPPLVT 337 (467)
T ss_pred HHHHHHHHHHHhhcCCCCCCCCcCeeeCCCCcchHHHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCcCC
Confidence 44455555555432 22222345689999999999865433 2333333333332 26777765
No 86
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=22.42 E-value=1.2e+02 Score=25.20 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=30.8
Q ss_pred CCCcccCcccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccC
Q 013458 3 NKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFN 48 (442)
Q Consensus 3 ~~~f~~~~~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~ 48 (442)
+-||+.+.+-.-=+..... +.+.|++|.+-+.+.+.+.|+...
T Consensus 66 ~~KFvnGkp~~iEa~y~m~---s~~~WdRFMRFmeRYA~~ngl~f~ 108 (109)
T TIGR03047 66 KAKFVNGKPKALEAVYIMK---SEDEWDRFMRFMERYAEANGLGYS 108 (109)
T ss_pred ceEEECCCccEEEEEEEEC---CHHHHHHHHHHHHHHHHhcCCccc
Confidence 4578888765522222222 578999999999999999998753
No 87
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=22.30 E-value=2.6e+02 Score=27.72 Aligned_cols=65 Identities=9% Similarity=0.059 Sum_probs=30.2
Q ss_pred cCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeC
Q 013458 12 VEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILP 89 (442)
Q Consensus 12 l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp 89 (442)
.++|++++.+ ..--..+.+.+.+.+++.|+++.....++. ...++...+.++.+ .+||.|++...
T Consensus 133 ~k~vaii~~d----~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~---~~~D~~~~v~~l~~------~~pd~v~~~~~ 197 (348)
T cd06355 133 GKRFYLVGSD----YVYPRTANKILKAQLESLGGEVVGEEYLPL---GHTDFQSIINKIKA------AKPDVVVSTVN 197 (348)
T ss_pred CCeEEEECCc----chHHHHHHHHHHHHHHHcCCeEEeeEEecC---ChhhHHHHHHHHHH------hCCCEEEEecc
Confidence 5666666432 222234445555555666666543222211 23444445544443 35666555433
No 88
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=21.58 E-value=2.5e+02 Score=27.45 Aligned_cols=33 Identities=9% Similarity=-0.043 Sum_probs=16.6
Q ss_pred cCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccC
Q 013458 12 VEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFN 48 (442)
Q Consensus 12 l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~ 48 (442)
.++|++++.+ .+--..+.+.+.+.+++.|+++.
T Consensus 135 ~~~v~ii~~~----~~~g~~~~~~~~~~~~~~g~~v~ 167 (340)
T cd06349 135 FKKVAILSVN----TDWGRTSADIFVKAAEKLGGQVV 167 (340)
T ss_pred CcEEEEEecC----ChHhHHHHHHHHHHHHHcCCEEE
Confidence 3455555322 23344455555555666666654
No 89
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=21.36 E-value=2.7e+02 Score=27.69 Aligned_cols=65 Identities=8% Similarity=0.042 Sum_probs=32.5
Q ss_pred cCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeC
Q 013458 12 VEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILP 89 (442)
Q Consensus 12 l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp 89 (442)
.++|++++.+ ..--+.+.+.+.+.+++.|+++.....+.. ...++...+.++.+ .++|.|++...
T Consensus 134 ~k~v~~l~~d----~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~---~~~D~s~~v~~l~~------~~pDav~~~~~ 198 (359)
T TIGR03407 134 AKRFFLLGSD----YVFPRTANKIIKAYLKSLGGTVVGEDYTPL---GHTDFQTIINKIKA------FKPDVVFNTLN 198 (359)
T ss_pred CceEEEecCc----cHHHHHHHHHHHHHHHHcCCEEEeeEEecC---ChHhHHHHHHHHHH------hCCCEEEEecc
Confidence 4667666421 222234455566666667777643222211 23455555555544 35776655443
No 90
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=21.29 E-value=49 Score=25.80 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=10.9
Q ss_pred CCCCceEEEEecCCCchhHH
Q 013458 241 NFKPHRIIFYRDGVSEGQFS 260 (442)
Q Consensus 241 g~~P~~IIiyRdGvsegq~~ 260 (442)
-.-|+++|..||++|..++.
T Consensus 8 Efdp~htvLLrD~~s~e~Ld 27 (79)
T PF09469_consen 8 EFDPEHTVLLRDYQSGEELD 27 (79)
T ss_dssp T--TTSEEEES-SS---B--
T ss_pred ccCcceEEEeecCCCCCccc
Confidence 34699999999999987764
No 91
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=20.88 E-value=1.4e+02 Score=25.02 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=31.2
Q ss_pred CCCcccCcccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccC
Q 013458 3 NKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFN 48 (442)
Q Consensus 3 ~~~f~~~~~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~ 48 (442)
+-||+.+.+-.-=+..... +.+.|++|.+-+.+.+.+.|+...
T Consensus 69 ~~KFvnGkp~~iEa~y~m~---s~~~WdRFMRFMeRYA~~ngl~f~ 111 (113)
T CHL00128 69 NAKFINGKPQAIEAIYIMK---NPEAWDRFMRFMERYAEDNGLTFT 111 (113)
T ss_pred ceEEECCCccEEEEEEEEC---CHHHHHHHHHHHHHHHHhcCCccc
Confidence 4578888765522222222 578999999999999999998764
No 92
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=20.65 E-value=6.5e+02 Score=22.96 Aligned_cols=77 Identities=12% Similarity=0.146 Sum_probs=44.7
Q ss_pred CCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh-hhHHHHHh
Q 013458 24 LNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS-YGRIKRVC 102 (442)
Q Consensus 24 ~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~-Y~~iK~~~ 102 (442)
.+......+.+.+.+.+++.|+.+.- .. ....++.....++++.. .++|.+++...+.... ...++
T Consensus 9 ~~~~~~~~~~~gi~~~~~~~g~~~~~---~~-~~~~~~~~~~~i~~l~~------~~~dgii~~~~~~~~~~~~~~~--- 75 (259)
T cd01542 9 LDSFSTSRTVKGILAALYENGYQMLL---MN-TNFSIEKEIEALELLAR------QKVDGIILLATTITDEHREAIK--- 75 (259)
T ss_pred CccchHHHHHHHHHHHHHHCCCEEEE---Ee-CCCCHHHHHHHHHHHHh------cCCCEEEEeCCCCCHHHHHHHh---
Confidence 34567788999999999999988621 11 12234444445555433 5788777764432222 23332
Q ss_pred hhhcCceeeeecc
Q 013458 103 ETELGIVSQCCQP 115 (442)
Q Consensus 103 ~~~~gI~TQ~i~~ 115 (442)
+.|+|.-.+..
T Consensus 76 --~~~ipvv~~~~ 86 (259)
T cd01542 76 --KLNVPVVVVGQ 86 (259)
T ss_pred --cCCCCEEEEec
Confidence 34676666643
No 93
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=20.64 E-value=2.7e+02 Score=26.75 Aligned_cols=49 Identities=14% Similarity=0.269 Sum_probs=33.9
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh-----hhHHHHHhhhhcCceeeeecccc
Q 013458 59 NPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS-----YGRIKRVCETELGIVSQCCQPRQ 117 (442)
Q Consensus 59 ~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~-----Y~~iK~~~~~~~gI~TQ~i~~~t 117 (442)
++++.++......++ -+|||+++|.|+...- ...+ ...|||+-+|...-
T Consensus 44 ~pe~~~~~~~~~~~~-----~~pDf~i~isPN~a~PGP~~ARE~l-----~~~~iP~IvI~D~p 97 (277)
T PRK00994 44 GPEEVEEVVKKMLEE-----WKPDFVIVISPNPAAPGPKKAREIL-----KAAGIPCIVIGDAP 97 (277)
T ss_pred CHHHHHHHHHHHHHh-----hCCCEEEEECCCCCCCCchHHHHHH-----HhcCCCEEEEcCCC
Confidence 466777666666655 3799999999986321 3333 35689999998653
No 94
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=20.47 E-value=4.8e+02 Score=25.41 Aligned_cols=66 Identities=9% Similarity=0.077 Sum_probs=33.3
Q ss_pred cCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeCC
Q 013458 12 VEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPD 90 (442)
Q Consensus 12 l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~ 90 (442)
.++++++..+ ...-+...+.+.+.+++.|+++.....+.. ...++...+.++.+ .+||+|++....
T Consensus 132 ~~~v~i~~~~----~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~---~~~d~~~~v~~l~~------~~pd~v~~~~~~ 197 (333)
T cd06358 132 ARRWYLIGND----YVWPRGSLAAAKRYIAELGGEVVGEEYVPL---GTTDFTSVLERIAA------SGADAVLSTLVG 197 (333)
T ss_pred CCeEEEEecc----chhhHHHHHHHHHHHHHcCCEEeeeeeecC---ChHHHHHHHHHHHH------cCCCEEEEeCCC
Confidence 4566665322 122334455556666677777644322221 23455555555444 467766665444
No 95
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=20.44 E-value=1.5e+02 Score=24.90 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=31.0
Q ss_pred CCCcccCcccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccC
Q 013458 3 NKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFN 48 (442)
Q Consensus 3 ~~~f~~~~~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~ 48 (442)
+-||+.+.+-.-=+..... +.+.|++|.+-+.+.+.+.|+...
T Consensus 69 ~~KFvnGkp~~iEa~y~m~---s~~~WdRFMRFMeRYA~~ngl~f~ 111 (113)
T PRK13612 69 KAKFVNGKPSALEATYIWK---SEQEWDRFMRFMERYAKENGLGFS 111 (113)
T ss_pred ceEEECCCccEEEEEEEEC---CHHHHHHHHHHHHHHHHhcCCccc
Confidence 4577877765522222222 578999999999999999998764
Done!