Query 013458
Match_columns 442
No_of_seqs 137 out of 1006
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 10:57:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yhb_A QDE-2, post-transcripti 100.0 3E-102 1E-106 798.4 27.1 411 1-442 2-437 (437)
2 4f3t_A Protein argonaute-2; hy 100.0 6.2E-98 2E-102 822.7 38.0 417 1-442 439-861 (861)
3 4f1n_A Kpago; argonaute, RNAI, 100.0 2.4E-92 8.2E-97 779.7 34.5 418 1-442 561-1046(1046)
4 2yha_A Post-transcriptional ge 100.0 6.4E-86 2.2E-90 669.0 28.9 364 1-442 2-388 (388)
5 1yvu_A Hypothetical protein AQ 100.0 4.2E-67 1.5E-71 563.8 33.6 337 4-404 344-695 (706)
6 3ho1_A Argonaute; argonaute, p 100.0 1.3E-61 4.5E-66 513.3 30.6 328 3-399 335-668 (685)
7 1u04_A Argonaute, hypothetical 100.0 4.1E-60 1.4E-64 509.8 30.8 341 1-405 362-759 (771)
8 2w42_A PIWI, putative uncharac 100.0 3.3E-55 1.1E-59 449.5 17.8 334 6-404 38-407 (427)
9 4g0x_A Protein argonaute 1; MI 100.0 5.8E-30 2E-34 225.5 11.8 143 2-144 1-147 (147)
10 4g0o_A Protein argonaute 5; MI 100.0 6.1E-30 2.1E-34 223.2 10.0 139 2-144 1-139 (139)
11 3luc_A Protein argonaute-2; MI 100.0 3.4E-28 1.2E-32 211.9 12.1 135 2-141 1-138 (138)
12 4g0m_A Protein argonaute 2; MI 99.9 4E-28 1.4E-32 214.4 11.2 143 2-144 1-150 (150)
13 2w36_A Endonuclease V; hypoxan 87.6 7.2 0.00025 35.6 12.3 47 345-400 176-222 (225)
14 2nrr_A Uvrabc system protein C 83.4 12 0.00042 32.1 11.0 96 159-293 17-114 (159)
15 3goc_A Endonuclease V; alpha-b 82.6 15 0.00052 33.7 11.9 44 345-398 180-223 (237)
16 2nrt_A Uvrabc system protein C 72.6 27 0.00093 31.6 10.5 96 159-293 22-119 (220)
17 3ga2_A Endonuclease V; alpha-b 71.0 6.4 0.00022 36.4 5.9 52 344-404 184-235 (246)
18 3c65_A Uvrabc system protein C 68.0 62 0.0021 29.4 11.8 102 159-293 14-118 (226)
19 2c2x_A Methylenetetrahydrofola 55.9 42 0.0014 31.6 8.6 73 62-136 14-88 (281)
20 4b4u_A Bifunctional protein fo 55.9 39 0.0013 32.1 8.4 78 62-141 34-116 (303)
21 3qbz_A DDK kinase regulatory s 54.9 4.6 0.00016 34.7 1.6 63 231-293 46-117 (160)
22 3p2o_A Bifunctional protein fo 53.3 48 0.0017 31.2 8.6 80 62-143 15-98 (285)
23 1a4i_A Methylenetetrahydrofola 47.4 60 0.0021 30.8 8.3 78 62-141 15-98 (301)
24 1b0a_A Protein (fold bifunctio 44.7 65 0.0022 30.4 8.0 73 62-136 14-89 (288)
25 4a5o_A Bifunctional protein fo 42.7 93 0.0032 29.3 8.7 80 62-143 16-100 (286)
26 4a26_A Putative C-1-tetrahydro 42.6 82 0.0028 29.9 8.4 80 62-143 17-102 (300)
27 3m9w_A D-xylose-binding peripl 40.2 2.1E+02 0.0071 26.0 11.0 87 15-115 5-91 (313)
28 2qh9_A UPF0215 protein AF_1433 39.0 27 0.00091 30.7 4.1 34 358-398 142-175 (184)
29 3l07_A Bifunctional protein fo 38.4 1E+02 0.0035 29.0 8.2 79 63-143 16-99 (285)
30 1edz_A 5,10-methylenetetrahydr 33.1 1.2E+02 0.004 29.0 7.9 75 62-141 16-96 (320)
31 3l6u_A ABC-type sugar transpor 32.3 2.7E+02 0.0092 24.7 10.3 88 14-115 10-97 (293)
32 3ngx_A Bifunctional protein fo 31.2 1.4E+02 0.0048 27.9 7.9 61 78-141 25-89 (276)
33 8abp_A L-arabinose-binding pro 30.7 2.3E+02 0.0078 25.4 9.5 79 23-115 11-90 (306)
34 3g1w_A Sugar ABC transporter; 29.6 2.4E+02 0.0082 25.3 9.4 89 14-115 6-94 (305)
35 3rot_A ABC sugar transporter, 25.3 3.6E+02 0.012 24.0 9.8 81 23-115 12-94 (297)
36 3nqi_A Putative lipoprotein; s 21.4 50 0.0017 30.3 2.7 23 229-251 196-219 (246)
37 2kvo_A Photosystem II reaction 21.3 74 0.0025 25.8 3.3 45 3-50 67-111 (120)
38 3e11_A Predicted zincin-like m 21.0 32 0.0011 27.8 1.2 14 240-253 62-75 (114)
39 3o1i_D Periplasmic protein TOR 20.6 2.9E+02 0.0098 24.6 8.1 80 23-114 14-94 (304)
No 1
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=100.00 E-value=3.2e-102 Score=798.38 Aligned_cols=411 Identities=30% Similarity=0.519 Sum_probs=293.6
Q ss_pred CCCCCccc-CcccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCC---eeccCCCChhHHHHHHHHHHHHHhh
Q 013458 1 MINKKMFN-GGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRP---VIPISSSNPNQIEKALVDVHNRTAQ 76 (442)
Q Consensus 1 m~~~~f~~-~~~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~ 76 (442)
|+|++|++ ++++++|+++++++..+.+.++.|++.|.+.|+.+||.+..|. .....+.....+ .++.+.+.
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~--~~~~~~~~--- 76 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF--FAKVKELM--- 76 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH--HHHHHHHH---
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHH--HHHHhhcc---
Confidence 78999999 7999999999996545778899999999999999999997763 222222233222 33433321
Q ss_pred cCCCceEEEEEeCCCCCh-hhHHHHHhhhhcCceeeeecccccccchhh--HHHHHHHHHHhhcCCeeeeeccccccCCC
Q 013458 77 QGKQLQMLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQ--YFENVALKINVKVGGRNTVLVDAVQKRIP 153 (442)
Q Consensus 77 ~~~~~~~vlvilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~--~~~ni~~kinaKlGG~n~~l~~~~~~~~p 153 (442)
.++||||||+|+++.+ |+.||++++.+.||+||||..+++.+.+++ ++.||++|||+||||+||.|+.+ +|
T Consensus 77 --~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~----~~ 150 (437)
T 2yhb_A 77 --SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IP 150 (437)
T ss_dssp --HTCSEEEEEESSCCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSC----CH
T ss_pred --CCCcEEEEEECCCChhHHHHHHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceecccc----cc
Confidence 3799999999998777 999999999999999999999999888888 99999999999999999999763 55
Q ss_pred ccCCCCeEEEEEeecCCC---CC--CCCCCeEEEEEeeeCCCCccceeeEEEecc-CchhhhhhhhhccCCCCCccchhH
Q 013458 154 LVTDRPTIIFGADVTHPQ---PG--EDSSPSIAAVVASMDWPEVTKYRGLVSAQA-HHEEIIQDLYKSTQDPQRGLVHGG 227 (442)
Q Consensus 154 ~~~~~~tmiiGidv~h~~---~~--~~~~~si~avv~S~d~~~~~~y~~~~~~q~-~~~e~i~~l~~~~~~p~~~~~~~~ 227 (442)
++.+.+|||||+||+|++ ++ ....||++|+|||+| ++.++|.+.++.|. +++|++++| ++
T Consensus 151 ~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~ 216 (437)
T 2yhb_A 151 LLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TD 216 (437)
T ss_dssp HHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HH
T ss_pred ccCCCCEEEEEEEEeccccccCCCcCCCCCEEEEEEEecC-CCcCeeeeEEEEcCCcchhHHHHH-------------HH
Confidence 565689999999999998 66 346799999999999 99999999999999 999999998 99
Q ss_pred HHHHHHHHHHH---hcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCC-CCCEEEEEEeeccccccccCCC
Q 013458 228 MIRELLIAFRR---STNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGY-APPVTFVVVQKRHHTRLFPADH 303 (442)
Q Consensus 228 ~~~~~L~~f~~---~~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~-~p~it~I~v~K~~~~Rff~~~~ 303 (442)
|+.++|+.|++ .++.+|+||||||||||||||.+|+++|+++|++||.++..+| +|+||||+|+||||+|||+.+.
T Consensus 217 ~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~ 296 (437)
T 2yhb_A 217 KFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDP 296 (437)
T ss_dssp HHHHHHHHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC------------
T ss_pred HHHHHHHHHHhhhhhcCCCCceEEEEeCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCCCEEEEEEEecccceeccCCc
Confidence 99999999999 8899999999999999999999999999999999999998777 8999999999999999999775
Q ss_pred CCCCCCCCCCCCCCeeeeccccccCCcCcEEEeeeCCCcccccceeeEEEecCC------CCCHHHHHHHHHHhhhccCc
Q 013458 304 NRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDEN------RFSADDFQVLTNNLCYTYAR 377 (442)
Q Consensus 304 ~~~~~~~~~~N~~~GTvvd~~i~~~~~~eFyL~s~~~~~GTarP~~Y~vl~d~~------~~~~d~lq~lt~~Lc~~~~~ 377 (442)
.+. .++.+|||||||||++||+|..+||||+||.++|||+||+||+||+||+ ++++|+||+|||+|||+|+|
T Consensus 297 ~~~--~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y~r 374 (437)
T 2yhb_A 297 KHI--HFKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGR 374 (437)
T ss_dssp ---------------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC---
T ss_pred ccc--ccccCCCCCceEecccccCCCCceEEEEecccccccCCceEEEEEeCCccccccCCCCHHHHHHHHHHHHHhhcc
Confidence 421 1267899999999999999999999999999999999999999999998 89999999999999999999
Q ss_pred CCCCcccccchHHHHHHHHHHhhhhccccCC--CCCCCCCCCCccccccCCCCccccccCCCCceeC
Q 013458 378 CTRSVSIVPPAYYAHLAAFRARYYIEDETSA--GGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC 442 (442)
Q Consensus 378 ~~~~islPapl~yA~~~a~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 442 (442)
|+++||||+|+||||++|+|||+|+.+..++ .+|++++.. .. + ......+|++++++||||
T Consensus 375 ~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~~~-~~-~--~~~~~~~~~~l~~~mfyl 437 (437)
T 2yhb_A 375 ATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSVKTDD-FA-R--WGNSGAVHPNLRNSMYYI 437 (437)
T ss_dssp -------CHHHHHHHHHHHHHHHHCHHHHHHHHHTSCCCHHH-HH-H--HHHHTSCCGGGTTSCTTC
T ss_pred ccCCCCcCCHHHHHHHHHHHHHHHhhhhccCCCCCCccCCCC-cc-c--cccccccCHhhcCCceeC
Confidence 9999999999999999999999999864322 222211111 11 1 122467999999999997
No 2
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=6.2e-98 Score=822.68 Aligned_cols=417 Identities=48% Similarity=0.792 Sum_probs=353.3
Q ss_pred CCCCCcccCcccCeEEEEEecCC--CCCChhHHHHHHHHHHHhhcCcccCCCCee-ccCCCChhHHHHHHHHHHHHHhhc
Q 013458 1 MINKKMFNGGRVEVWTCVNFSTR--LNRDVPFQFCQGLVDMCNSKGMVFNPRPVI-PISSSNPNQIEKALVDVHNRTAQQ 77 (442)
Q Consensus 1 m~~~~f~~~~~l~~W~iv~~~~~--~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~ 77 (442)
|++++|++|+++++|+++++.+. .+.+.++.|++.|.+.|+.+||.+..+|.+ ... ...+.++..++.+.+.
T Consensus 439 ~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~-~~~~~~~~~~~~l~~~---- 513 (861)
T 4f3t_A 439 MRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYA-QGADSVEPMFRHLKNT---- 513 (861)
T ss_dssp CTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEEC-CSSSSHHHHHHHHHHH----
T ss_pred ccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCCcccCCCCeEEEec-CchHHHHHHHHHHHhh----
Confidence 68899999999999999998642 356689999999999999999999764433 222 2234566666655543
Q ss_pred CCCceEEEEEeCCCCChhhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhhcCCeeeeeccccccCCCccCC
Q 013458 78 GKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTD 157 (442)
Q Consensus 78 ~~~~~~vlvilp~~~~~Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaKlGG~n~~l~~~~~~~~p~~~~ 157 (442)
..+++|||||+|++...|+.||++||.+.||+||||..+++.+.+++++.||++|||+||||+||.+.+. ..|.+..
T Consensus 514 ~~~~qlvl~Ilp~~~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~ 590 (861)
T 4f3t_A 514 YAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQ 590 (861)
T ss_dssp STTCCEEEEEESSSCTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGGGG
T ss_pred cCCCcEEEEEeCCCccHHHHHHHHhcccCCcceEEEEecccccccHHHHHHHHHHHHHhcCCcceecccc---ccccccC
Confidence 2579999999997544499999999999999999999999988889999999999999999999998653 2344446
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccceeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHH
Q 013458 158 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFR 237 (442)
Q Consensus 158 ~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f~ 237 (442)
.+|||||+||+|++++....||++|||||+| .+.++|.+.++.|.+++|+|++| ++|+.++|.+|+
T Consensus 591 ~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~E~i~~l-------------~~~~~~~L~~~~ 656 (861)
T 4f3t_A 591 QPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFY 656 (861)
T ss_dssp SCEEEEEEEEECCC----CCCEEEEEEEECS-SSSCCEEEEEEEESTTCCSCTTH-------------HHHHHHHHHHHH
T ss_pred CceEEEEEEecccCCCCCCCceEEEEEEEcC-CCcceEEEEEEEcCCCccHHHHH-------------HHHHHHHHHHHH
Confidence 8999999999999987667899999999999 89999999999999999999998 999999999999
Q ss_pred HhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccccCCCCCCCCCCCCCCCCC
Q 013458 238 RSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILP 317 (442)
Q Consensus 238 ~~~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~~~~~~~~~~~~~N~~~ 317 (442)
+.++.+|+||||||||||||||.+|+++|+++|++||.++..+|+|+||||+|+||||+|||+.+.. +..++.+||||
T Consensus 657 ~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~--~~~~~~~N~~p 734 (861)
T 4f3t_A 657 KSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKN--ERVGKSGNIPA 734 (861)
T ss_dssp HHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEESSGG--GCBTTTTBCCT
T ss_pred HHhCCCCceEEEEecCCChHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEEccccceeeecCCc--ccccccCCCCC
Confidence 9999999999999999999999999999999999999999889999999999999999999997653 12356899999
Q ss_pred eeeeccccccCCcCcEEEeeeCCCcccccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHHHHHH
Q 013458 318 GTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFR 397 (442)
Q Consensus 318 GTvvd~~i~~~~~~eFyL~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~~a~r 397 (442)
|||||++||+|..+||||+||.++|||+|||||+||+||+++++|+||+|||+|||+|+||+++||||+|+||||++|+|
T Consensus 735 GTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~d~lq~lty~Lc~~y~~~t~~vsvpaP~yYA~~~a~R 814 (861)
T 4f3t_A 735 GTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFR 814 (861)
T ss_dssp TEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCHHHHHHHHHHHTTCCTTSSBCCSSCHHHHHHHHHHHH
T ss_pred ceeccCccccCCCCEEEEEEEecccccccCceEEEEeCCCCCCHHHHHHHHHHHhhhhhccCCCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccccCCCCCCC--CCCC-CccccccCCCCccccccCCCCceeC
Q 013458 398 ARYYIEDETSAGGSTG--GSRS-TADRNLAIRPLPVIKDNVKDVMFYC 442 (442)
Q Consensus 398 ~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~m~~~ 442 (442)
||+|+.+...++++++ |+.+ ..+...+ .....+|++++++||||
T Consensus 815 ~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vh~~~~~~M~y~ 861 (861)
T 4f3t_A 815 ARYHLVDKEHDSAEGSHTSGQSNGRDHQAL-AKAVQVHQDTLRTMYFA 861 (861)
T ss_dssp HHHHHCCC----------------CCSTTH-HHHTCCCHHHHTTTTTC
T ss_pred HHHhhccccccCCccccccCCCcccchhhh-hhhhhhhhhhccCceeC
Confidence 9999986433222222 1111 1111110 11246999999999997
No 3
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=2.4e-92 Score=779.66 Aligned_cols=418 Identities=29% Similarity=0.492 Sum_probs=344.4
Q ss_pred CCCCCcccCcc-cCeEEEEEecCC-C-----CCChhHHHHHHHHHHHhhcCcccCCC--Ceec---------cCCCC---
Q 013458 1 MINKKMFNGGR-VEVWTCVNFSTR-L-----NRDVPFQFCQGLVDMCNSKGMVFNPR--PVIP---------ISSSN--- 59 (442)
Q Consensus 1 m~~~~f~~~~~-l~~W~iv~~~~~-~-----~~~~~~~f~~~L~~~~~~~Gi~i~~~--~~~~---------~~~~~--- 59 (442)
|++++|++|+. +.+|.++++... . +.+.+..|++.|++.|+.+||.+..+ |.+. +....
T Consensus 561 m~~~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~~~~ 640 (1046)
T 4f1n_A 561 MKGHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGRGG 640 (1046)
T ss_dssp CTTCCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC---------
T ss_pred CCCCEEecCCcccceEEEEEEcCCCcccccccHHHHHHHHHHHHHHHHhcCCccCCCCCCcccccccccccccccccccc
Confidence 68899999875 567776654321 1 12578999999999999999999763 3210 10000
Q ss_pred -----------------------hhHHHHHHHHHHHHHhhcCCCceEEEEEeCCC-CCh-hhHHHHHhhhhcCceeeeec
Q 013458 60 -----------------------PNQIEKALVDVHNRTAQQGKQLQMLIIILPDV-SGS-YGRIKRVCETELGIVSQCCQ 114 (442)
Q Consensus 60 -----------------------~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~-~~~-Y~~iK~~~~~~~gI~TQ~i~ 114 (442)
.++.+..|..+++.+ .+++|||||+|++ +.+ |+.||++||.+.||+||||.
T Consensus 641 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv~ 716 (1046)
T 4f1n_A 641 RGGRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLENI----PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVV 716 (1046)
T ss_dssp -------------------CCCBCCTTHHHHHHHHHTC----CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEEE
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHHhc----CCCCEEEEEecCCCCchHHHHHHHHhhccCCcccEEEe
Confidence 023455666666643 5789999999998 445 99999999999999999999
Q ss_pred ccccccchhhHHHHHHHHHHhhcCCeeeeeccccccCCCccC----CCCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCC
Q 013458 115 PRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVT----DRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWP 190 (442)
Q Consensus 115 ~~t~~k~~~~~~~ni~~kinaKlGG~n~~l~~~~~~~~p~~~----~~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~ 190 (442)
.+++.+.+++++.||++|||+||||+||.|.++ .+|.+. ..+|||||+||+|++++ ..+|++|||||+| .
T Consensus 717 ~~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~---~~~~l~~~~~~~ptMiiG~DVtH~p~~--~~~SiaavVaS~d-~ 790 (1046)
T 4f1n_A 717 WDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIE---NNKLLIDKESNLPILVLGSDVTHYPEK--DQNSIASLVGSYD-D 790 (1046)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCBCCEECTT---GGGGGEETTTTEECEEEEEEEECCSST--TCEEEEEEEECCS-S
T ss_pred hhhhccccHHHHHHHHHHHHHhcCCeeeecccc---ccccccccccCCceEEEeeeeecCCCC--CCCeeeEEEEEEC-C
Confidence 999998889999999999999999999999864 234332 34699999999995433 2469999999999 8
Q ss_pred CccceeeEEEeccC-chhhhhhhhhccCCCCCccchhHHHHHHHHHHHHh-cCCCCceEEEEecCCCchhHHHHHHHHHH
Q 013458 191 EVTKYRGLVSAQAH-HEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRS-TNFKPHRIIFYRDGVSEGQFSQVLLHEMN 268 (442)
Q Consensus 191 ~~~~y~~~~~~q~~-~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f~~~-~g~~P~~IIiyRdGvsegq~~~v~~~Ei~ 268 (442)
.+++|.+.+++|.+ ++|+|++| ++|+.++|+.|++. +|.+|++|||||||||||||.+|+++|++
T Consensus 791 ~~t~y~s~~~~Q~~~~~Eii~~L-------------~~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~ 857 (1046)
T 4f1n_A 791 KFTQFPGDYMLQDGPGEEIITNV-------------GSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVK 857 (1046)
T ss_dssp SCCCCCEEEEEEEEETCCSCTTG-------------GGGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHH
T ss_pred CcCeEeeEEEEecCCCccHHHHH-------------HHHHHHHHHHHHHhcCCCCCcEEEEEecCCchHHHHHHHHHHHH
Confidence 99999999999998 99999998 99999999999998 78999999999999999999999999999
Q ss_pred HHHHHHHhhc------CCCCCCEEEEEEeeccccccccCCCCCCCCC------CCCCCCCCeeeeccccccCCcCcEEEe
Q 013458 269 AIRQACASLE------EGYAPPVTFVVVQKRHHTRLFPADHNRRDLT------DRSGNILPGTVFDTHICHPTEFDFYLN 336 (442)
Q Consensus 269 ~i~~a~~~~~------~~~~p~it~I~v~K~~~~Rff~~~~~~~~~~------~~~~N~~~GTvvd~~i~~~~~~eFyL~ 336 (442)
+|++||.++. .+|+|+||||+|+||||+|||+.+..+.|.. +..+||+||||||++||+|..+||||+
T Consensus 858 ~Ik~a~~~~~~~~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~ 937 (1046)
T 4f1n_A 858 SIKESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQ 937 (1046)
T ss_dssp HHHHHHHHHTHHHHTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEE
T ss_pred HHHHHHHHhhhhcccccCCCCCEEEEEEecCccceeeeccccccccccccccccccCCCCCCcEeeccccccCcceEEEE
Confidence 9999999985 5789999999999999999999654211111 136899999999999999999999999
Q ss_pred eeCCCcccccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHHHHHHHhhhhcccc----CCCCCC
Q 013458 337 SHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDET----SAGGST 412 (442)
Q Consensus 337 s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~~a~r~~~~~~~~~----~~~~~~ 412 (442)
||.++|||+|||||+||+||++++.|+||+|||+|||+|+||+++||||+|+||||++|+|||+|++... .+++++
T Consensus 938 Sh~~~qGTarPthY~VL~De~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla~R~r~~~~~~~~~~~~~~~~~ 1017 (1046)
T 4f1n_A 938 SHQALKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPKE 1017 (1046)
T ss_dssp CSCCCSSSCCCEEEEEEEESSCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHHHHHHHHHHHTSHHHHHCC---
T ss_pred ccccCCCcccCcEEEEEeCCCCCCHHHHHHHHHHHhhhhcccCCCccccHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998643 233332
Q ss_pred CCCCCCccccccCCCCccccccCCCCceeC
Q 013458 413 GGSRSTADRNLAIRPLPVIKDNVKDVMFYC 442 (442)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 442 (442)
+++..... ....++++.+|++++++||||
T Consensus 1018 ~~~~~~~~-~~~~~~~~~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A 1018 KGSKDQPT-VSKNVLLPQVNDNIKSVMYYI 1046 (1046)
T ss_dssp -------C-CCHHHHSCCCCGGGTTSCTTC
T ss_pred cCCccccc-cCcccccchhhhhhccceeeC
Confidence 22221111 112466899999999999997
No 4
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=100.00 E-value=6.4e-86 Score=669.04 Aligned_cols=364 Identities=29% Similarity=0.489 Sum_probs=294.2
Q ss_pred CCCCCccc-CcccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCC---eeccCCCChhHHHHHHHHHHHHHhh
Q 013458 1 MINKKMFN-GGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRP---VIPISSSNPNQIEKALVDVHNRTAQ 76 (442)
Q Consensus 1 m~~~~f~~-~~~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~ 76 (442)
|+|++|++ ++++++|+++++.+..+.+.+++|++.|.+.|+.+||.+..|. .....+.....+ .++.+...
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~--~~~~~~~~--- 76 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF--FAKVKELM--- 76 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH--HHHHHHHH---
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHh--HHHHhhcc---
Confidence 79999999 7999999999996545778899999999999999999997763 122222233332 33433321
Q ss_pred cCCCceEEEEEeCCCCCh-hhHHHHHhhhhcCceeeeecccccccchhh--HHHHHHHHHHhhcCCeeeeeccccccCCC
Q 013458 77 QGKQLQMLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQ--YFENVALKINVKVGGRNTVLVDAVQKRIP 153 (442)
Q Consensus 77 ~~~~~~~vlvilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~--~~~ni~~kinaKlGG~n~~l~~~~~~~~p 153 (442)
.++||||||+|+++.+ |+.||++++.+.||+||||..+++.+.+++ +++||++|||+||||+||.|.++ +|
T Consensus 77 --~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~~----~~ 150 (388)
T 2yha_A 77 --SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IP 150 (388)
T ss_dssp --HTCSEEEEEESSSCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCSC----CH
T ss_pred --CCCeEEEEEECCCChhHHHHHHHHHhccCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHHhCCcceecccc----cc
Confidence 3799999999998777 999999999999999999999999888888 99999999999999999999763 45
Q ss_pred ccCCCCeEEEEEeecCCC---CC--CCCCCeEEEEEeeeCCCCccceeeEEEecc-CchhhhhhhhhccCCCCCccchhH
Q 013458 154 LVTDRPTIIFGADVTHPQ---PG--EDSSPSIAAVVASMDWPEVTKYRGLVSAQA-HHEEIIQDLYKSTQDPQRGLVHGG 227 (442)
Q Consensus 154 ~~~~~~tmiiGidv~h~~---~~--~~~~~si~avv~S~d~~~~~~y~~~~~~q~-~~~e~i~~l~~~~~~p~~~~~~~~ 227 (442)
++.+.+|||||+||+|++ ++ ....||++|+|||+| ++.++|.+.++.|. +++|++++| ++
T Consensus 151 ~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~ 216 (388)
T 2yha_A 151 LLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TD 216 (388)
T ss_dssp HHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HH
T ss_pred ccCCCCEEEEEEEEecccccCCCCcCCCCCEEEEEEEEcC-CCCCEEEEEEEEcCCCcccHHHHH-------------HH
Confidence 555689999999999998 76 446899999999999 99999999999999 999999998 99
Q ss_pred HHHHHHHHHHH---hcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCC-CCCEEEEEEeeccccccccCCC
Q 013458 228 MIRELLIAFRR---STNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGY-APPVTFVVVQKRHHTRLFPADH 303 (442)
Q Consensus 228 ~~~~~L~~f~~---~~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~-~p~it~I~v~K~~~~Rff~~~~ 303 (442)
|+.++|+.|++ .+|.+|+||||||||||||||.+|+++|+++|++||.++..+| +|+||||+|+||
T Consensus 217 ~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr---------- 286 (388)
T 2yha_A 217 KFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG---------- 286 (388)
T ss_dssp HHHHHHHHHHHSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC------------
T ss_pred HHHHHHHHHHHhhhhcCCCCceEEEEecCcChhHHHHHHHHHHHHHHHHHHHhhcccCCCcEEEEEeccc----------
Confidence 99999999999 8899999999999999999999999999999999999998877 899999999997
Q ss_pred CCCCCCCCCCCCCCeeeeccccccCCcCcEEEeeeCCCcccccceeeEEEecCC------CCCHHHHHHHHHHhhhccCc
Q 013458 304 NRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDEN------RFSADDFQVLTNNLCYTYAR 377 (442)
Q Consensus 304 ~~~~~~~~~~N~~~GTvvd~~i~~~~~~eFyL~s~~~~~GTarP~~Y~vl~d~~------~~~~d~lq~lt~~Lc~~~~~ 377 (442)
+||+||+||+||+ +++.|+||+|||+|||+|+|
T Consensus 287 -----------------------------------------arPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y~r 325 (388)
T 2yha_A 287 -----------------------------------------SGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGR 325 (388)
T ss_dssp ---------------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC---
T ss_pred -----------------------------------------cCCceEEEEeCCccccccCCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999998 89999999999999999999
Q ss_pred CCCCcccccchHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccCCCCccccccCCCCceeC
Q 013458 378 CTRSVSIVPPAYYAHLAAFRARYYIEDETSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC 442 (442)
Q Consensus 378 ~~~~islPapl~yA~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 442 (442)
|+++||||+|+||||++|+|||.|+.+..++++++++.++....+ ......+|++|+++||||
T Consensus 326 ~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~mfyl 388 (388)
T 2yha_A 326 ATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSVKTDDFAR--WGNSGAVHPNLRNSMYYI 388 (388)
T ss_dssp -------CHHHHHHHHHHHHHHHHCHHHHHHHTTCSCCCHHHHHH--HHHHTCCCGGGTTSCTTC
T ss_pred ccCCCCcCcHHHHHHHHHHHHHHHhhhhccCCCcccccCCCcccc--cccccccCHHhcCCceeC
Confidence 999999999999999999999999986432222211111111001 122468999999999997
No 5
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=4.2e-67 Score=563.78 Aligned_cols=337 Identities=17% Similarity=0.189 Sum_probs=271.9
Q ss_pred CCcccCcccCe---EEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCC
Q 013458 4 KKMFNGGRVEV---WTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQ 80 (442)
Q Consensus 4 ~~f~~~~~l~~---W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 80 (442)
.+|+.++++++ |.++ +.. .+ ..++.|++.|.+.|+.+||.+..|+....... .+++.++.+.+... +..+
T Consensus 344 ~~~~~~~~l~~~~lW~~i-~~~-~~-~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~~---~~~~~~~~l~~~~~-~~~~ 416 (706)
T 1yvu_A 344 RPFVKKDVLSVEIISVSV-YKK-LE-WRKEEFLKELINFLKNKGIKLKIKGKSLILAQ---TREEAKEKLIPVIN-KIKD 416 (706)
T ss_dssp CCCCSCSEEEEEEEEEEC--------CHHHHHHHHHHHHHHTTTCEEEEEEEEEEECS---STTHHHHHHHHHHT-TTSS
T ss_pred CceecccccccceEEEEE-ecc-hh-HHHHHHHHHHHHHHHHcCceecCCccccccch---hHHHHHHHHHHHhc-ccCC
Confidence 46888999999 9555 332 22 37999999999999999999976543322222 33444554444332 1367
Q ss_pred ceEEEEEeCCC-------CCh-hhHHHHHhhhhcCceeeeecccccccc-hhhHHHHHHHHHHhhcCCeeeeeccccccC
Q 013458 81 LQMLIIILPDV-------SGS-YGRIKRVCETELGIVSQCCQPRQASRL-NMQYFENVALKINVKVGGRNTVLVDAVQKR 151 (442)
Q Consensus 81 ~~~vlvilp~~-------~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~-~~~~~~ni~~kinaKlGG~n~~l~~~~~~~ 151 (442)
+|++|||+|++ +.+ |+.||+++ .+.||+||||..+++.+. ..++++||++|||+||||+||.|..+
T Consensus 417 ~qlvlvIlp~~~~~~~~~~~~~Y~~IK~~~-~~~GI~TQcv~~~tl~~~~~~q~~~NI~lkiN~KLGG~nw~L~~~---- 491 (706)
T 1yvu_A 417 VDLVIVFLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI---- 491 (706)
T ss_dssp CSEEEEEEC----------CHHHHHHHHHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCC----
T ss_pred CcEEEEEECCccccccccCccHHHHHHHHH-hcCCCceEEEehhhccccchHHHHHHHHHHHHHHhCCeeeeeccC----
Confidence 99999999997 566 99999996 499999999999998764 57999999999999999999999753
Q ss_pred CCccCCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCC--ccceeeEEEeccCchhhhhhhhhccCCCCCccchhHHH
Q 013458 152 IPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPE--VTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMI 229 (442)
Q Consensus 152 ~p~~~~~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~--~~~y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~ 229 (442)
...+|||||+||+|++.+. ..||++|+|+|+| .. +++|.+....|. ++|++++ ++
T Consensus 492 ----~~~~tmiIGiDVsH~~~~~-~~pSv~g~vas~d-~~g~~~~~~~~~~~q~-~~ei~~~----------------l~ 548 (706)
T 1yvu_A 492 ----EGKVDAFVGIDISRITRDG-KTVNAVAFTKIFN-SKGELVRYYLTSYPAF-GEKLTEK----------------AI 548 (706)
T ss_dssp ----TTCCSEEEEECEEECCCSS-SCCCEEEEEEEEC-TTSCEEEEEEEEECSC-TTHHHHH----------------HH
T ss_pred ----CCCceEEEEEEEeccCCCC-CCceEEEEEEEEc-CCCCEEEEEEEecccc-cchHHHH----------------HH
Confidence 1368999999999997433 3589999999998 44 677777665554 6787754 45
Q ss_pred HHHHHHHHHhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccccCCCCCCCCC
Q 013458 230 RELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLT 309 (442)
Q Consensus 230 ~~~L~~f~~~~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~~~~~~~~~ 309 (442)
..+|+.|++.++.+|+||||||||||| ++|+++|++||.+ |.|++++|+|+||||+|||+.+
T Consensus 549 ~~~l~~~~~~~~~~P~rIIiyRDGVse-------~~El~~Ik~A~~~----~~pkit~IvV~Krh~tRfF~~~------- 610 (706)
T 1yvu_A 549 GDVFSLLEKLGFKKGSKIVVHRDGRLY-------RDEVAAFKKYGEL----YGYSLELLEIIKRNNPRFFSNE------- 610 (706)
T ss_dssp HHHHHHHHHTTCCTTCEEEEEESSCCC-------HHHHHHHHHHHHH----HTCEEEEEEEECSSCCCEECSC-------
T ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCCc-------HHHHHHHHHHHHH----cCCcEEEEEEEeccCeeEECCC-------
Confidence 566778888888999999999999999 7899999999987 4799999999999999999853
Q ss_pred CCCCCCCCeeeeccccccCCcCcEEEeeeC-CCcccccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCCcccccch
Q 013458 310 DRSGNILPGTVFDTHICHPTEFDFYLNSHA-GIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPA 388 (442)
Q Consensus 310 ~~~~N~~~GTvvd~~i~~~~~~eFyL~s~~-~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl 388 (442)
||+||||||. ..++|||.+|. +.|||+||+||+++++|. +.|+||++||+|||+|+||++++|+|+|+
T Consensus 611 ----np~pGTvVD~-----~~~~ffL~ss~~~~qGT~rPthY~vv~~D~--~~d~Lq~lty~Lc~ly~r~t~svslPaPi 679 (706)
T 1yvu_A 611 ----KFIKGYFYKL-----SEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATV 679 (706)
T ss_dssp ----SCCTTEEEEB-----SSSEEEECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTT
T ss_pred ----CCCCeEEEEc-----CCCeEEEEecCCccCCCCCCEEEEEEeCCC--CHHHHHHHHHHHHHhccccCCCcccChHH
Confidence 5999999994 34778887665 499999999999555555 89999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcc
Q 013458 389 YYAHLAAFRARYYIED 404 (442)
Q Consensus 389 ~yA~~~a~r~~~~~~~ 404 (442)
||||++|+|++.++.+
T Consensus 680 yYAhllA~r~~~~~~p 695 (706)
T 1yvu_A 680 HYSDKITKLMLRGIEP 695 (706)
T ss_dssp TTHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999999999874
No 6
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=1.3e-61 Score=513.33 Aligned_cols=328 Identities=17% Similarity=0.202 Sum_probs=258.4
Q ss_pred CCCcccCcccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCce
Q 013458 3 NKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQ 82 (442)
Q Consensus 3 ~~~f~~~~~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 82 (442)
+.+|+.++.. .|+++++.+ +.+.+++|++.|.+.|+.+||.+..+......+.. ..+...++++.+ .++|
T Consensus 335 ~~~~~~~~~~-~~ail~l~~--~~~~~~~f~~~L~~va~~~G~~i~~~~~~~~~~d~-~~~~~~l~~~~~------~~~q 404 (685)
T 3ho1_A 335 RVGFYRAQET-ALALLRLDG--AQGWPEFLRRALLRAFGASGASLRLHTLHAHPSQG-LAFREALRKAKE------EGVQ 404 (685)
T ss_dssp HHCCSSCCCE-EEEEEECSS--CCSCCHHHHHHHHHHHHSSSSCEEEEECCCCGGGT-HHHHHHHHHHHH------TTCC
T ss_pred cCcceeccCc-eEEEEeccC--chHHHHHHHHHHHHHHHhCCcEeccceeecCCCch-HHHHHHHHHhhh------cCCC
Confidence 5567777765 799998865 34788999999999999999999753212121111 134444444433 5799
Q ss_pred EEEEEeCCCCCh-hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhhcCCeeeeeccccccCCCccCCCCeE
Q 013458 83 MLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTI 161 (442)
Q Consensus 83 ~vlvilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaKlGG~n~~l~~~~~~~~p~~~~~~tm 161 (442)
+||||+|++..+ |+.||+++ .+.|||||||. +++.+...++++||++|||+||||+||.|+. |. .++|
T Consensus 405 lvvvIlp~~~~~~y~~IKk~~-~~~GIpTQcV~-~tl~k~~~~ia~NIaLkINaKLGG~pW~L~~------P~---~~tm 473 (685)
T 3ho1_A 405 AVLVLTPPMAWEDRNRLKALL-LREGLPSQILN-VPLREEERHRWENALLGLLAKAGLQVVALSG------AY---PAEL 473 (685)
T ss_dssp EEEEEESCCCHHHHHHHHHHH-HHTTCCEEEEE-SSCCTTCHHHHHHHHHHHHHHHTCCCCEECS------CC---SCSE
T ss_pred EEEEEECCCCccHHHHHHHHH-hcCCCccEEEe-cccccccHhHHHHHHHHHHHHhCCeeEEecC------CC---CCeE
Confidence 999999998887 99999986 79999999999 7777777889999999999999999999975 32 6899
Q ss_pred EEEEeecCCCCCCCCCCeEEEEEeeeCC-CCccceeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHHHhc
Q 013458 162 IFGADVTHPQPGEDSSPSIAAVVASMDW-PEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRST 240 (442)
Q Consensus 162 iiGidv~h~~~~~~~~~si~avv~S~d~-~~~~~y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f~~~~ 240 (442)
|||+||+|++. .++++++++++. +...+| +....|.+.++.++++ .+++.++|..|++.+
T Consensus 474 iIGiDVsH~~~-----~~~~~~aav~~~dg~~~~~-~~~~~Q~~e~l~~~~L-------------~~~l~eaL~~Y~k~n 534 (685)
T 3ho1_A 474 AVGFDAGGRES-----FRFGGAACAVGGDGGHLLW-TLPEAQAGERIPQEVV-------------WDLLEETLWAFRRKA 534 (685)
T ss_dssp EEEEEEEETTE-----EEEEEEEEEECC--CCCEE-ECCCCCCSCCCHHHHH-------------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCC-----CccceEEEEEECCCCEEEe-EEEEccCCcEecHHHH-------------HHHHHHHHHHHHHHh
Confidence 99999999862 345555554440 444554 2344565444445677 999999999999999
Q ss_pred CCCCceEEEEecCC-CchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccccCCCCCCCCCCCCCCCCCee
Q 013458 241 NFKPHRIIFYRDGV-SEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGT 319 (442)
Q Consensus 241 g~~P~~IIiyRdGv-segq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~~~~~~~~~~~~~N~~~GT 319 (442)
|.+|+||||||||| +|+|+ ++|++||.++ .++++||+|+||||+|||+.+. +|.+||
T Consensus 535 g~lP~RIIIyRDGV~se~E~--------~~I~eAl~~~----~~~~t~IvVqKRh~tRfF~~n~----------pp~~Gt 592 (685)
T 3ho1_A 535 GRLPSRVLLLRNGRVPQDEF--------ALALEALARE----GIAYDLVSVRKSGGGRVYPVQG----------RLADGL 592 (685)
T ss_dssp SSCCSEEEEEECSSSCSGGG--------HHHHHHHHHT----TCEEEEEEEESSCCCCEEESSS----------CCCSSE
T ss_pred CCCCcEEEEEeCCCCCHHHH--------HHHHHHHHhc----CCCEEEEEEEecCCceEecCCC----------CCCCeE
Confidence 99999999999999 78755 5667888876 4789999999999999999742 467788
Q ss_pred eeccccccCCcCcEEEeee-CCCcccccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCC-CCcccccchHHHHHHH-H
Q 013458 320 VFDTHICHPTEFDFYLNSH-AGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCT-RSVSIVPPAYYAHLAA-F 396 (442)
Q Consensus 320 vvd~~i~~~~~~eFyL~s~-~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~-~~islPapl~yA~~~a-~ 396 (442)
+++. +.++|||.++ .+.+||++|+||+ +|+++++.|+||++||+|||+|+||+ +++|+|+|+||||++| .
T Consensus 593 ~v~~-----e~d~flL~s~gsv~qGT~rPthy~--~D~~~~s~D~LQ~ltY~Lchmy~nst~~svsvPAP~~YAhklAk~ 665 (685)
T 3ho1_A 593 YVPL-----EDKTFLLLTVHRDFRGTPRPLKLV--HEAGDTPLEALAHQIFHLTRLYPASGFAFPRLPAPLHLADRLVKE 665 (685)
T ss_dssp EEEC-----STTEEEEECCCCCSSSCCCCEEEE--EEEECSCHHHHHHHHHHGGGCCSSCSSSCCSSCHHHHHHHHHHHH
T ss_pred EEeC-----CCCEEEEEecCCCCccCCceEEEE--ECCCCCCHHHHHHHHHHHHHhhccCCCCCCCcChHHHHHHHHHHH
Confidence 8743 4455555543 5789999999998 89999999999999999999999998 9999999999999999 4
Q ss_pred HHh
Q 013458 397 RAR 399 (442)
Q Consensus 397 r~~ 399 (442)
|+|
T Consensus 666 ~~r 668 (685)
T 3ho1_A 666 VGR 668 (685)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 7
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=4.1e-60 Score=509.75 Aligned_cols=341 Identities=16% Similarity=0.169 Sum_probs=262.4
Q ss_pred CCCCCcccCcc----cCe------EEEEEecCCCCCChhHHHH---------HHHHHHHh-----------hcCcccCCC
Q 013458 1 MINKKMFNGGR----VEV------WTCVNFSTRLNRDVPFQFC---------QGLVDMCN-----------SKGMVFNPR 50 (442)
Q Consensus 1 m~~~~f~~~~~----l~~------W~iv~~~~~~~~~~~~~f~---------~~L~~~~~-----------~~Gi~i~~~ 50 (442)
|++.+++.+.. +++ |.+++ .+ ..+.+.+|+ +.|.+.++ .+|++++.+
T Consensus 362 ~~~~~~~~~~~~p~~l~~~~~i~~wil~~-~~--~~~~~~~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~ 438 (771)
T 1u04_A 362 SRKYPVILPYEVPEKFRKIREIPMFIILD-SG--LLADIQNFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFL 438 (771)
T ss_dssp SCCCCCCCCSBCCTHHHHCCCCCEEEEEE-TT--SCHHHHHHHHHHHHHHHHHHCC------------------------
T ss_pred hCCCcceecccchhhhhcccccceEEEEe-CC--chHHHHHHHHHHhhhHHHHHHHHHhhcccchhhcccccccccCCCc
Confidence 45667755553 444 66664 43 467888888 55656553 334444331
Q ss_pred ------CeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeCCC-CCh-hhHHHHHhhhhcCceeeeecccccccc-
Q 013458 51 ------PVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDV-SGS-YGRIKRVCETELGIVSQCCQPRQASRL- 121 (442)
Q Consensus 51 ------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~-~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~- 121 (442)
+.+...-.+.+.++..++.+.++.. +..+|+||++++.. +.+ |+.||+++ .+.|||||||..+|+.+.
T Consensus 439 ~~~~~~~~i~~dl~~~~~i~~~l~~~~~~~~--~~~~~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~ 515 (771)
T 1u04_A 439 DFRGKEKVITEDLNSDKGIIEVVEQVSSFMK--GKELGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKR 515 (771)
T ss_dssp -----CEEEEECTTSHHHHHHHHHHHHHHHT--TCSCEEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCE
T ss_pred ccccCcceecccccchHHHHHHHHHHHHhcc--CCCCCEEEEEEcCCCCcchHHHHHHHH-hcCCcccEEEecccccCcc
Confidence 1111111133567788888877654 25689988887543 445 99999998 799999999999998643
Q ss_pred ---h-----hhHHHHHHHHHHhhcCCeeeeeccccccCCCccCCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCcc
Q 013458 122 ---N-----MQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVT 193 (442)
Q Consensus 122 ---~-----~~~~~ni~~kinaKlGG~n~~l~~~~~~~~p~~~~~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~ 193 (442)
+ .++++||++|||+||||+||.|+. |. .++||||+||+|+.++ ...++++|+|++.| +...
T Consensus 516 ~k~~~~~l~~sia~NIalqIn~KLGG~pW~L~~------p~---~~tmiIGiDV~H~~~~-~~svs~~A~V~s~d-g~~~ 584 (771)
T 1u04_A 516 DKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDY------RF---NYDYIIGIDVAPMKRS-EGYIGGSAVMFDSQ-GYIR 584 (771)
T ss_dssp ETTEEEEECHHHHHHHHHHHHHHTTCBCCEESC------CC---SSSEEEEEEEEEECCT-TTCEEEEEEEEETT-SCEE
T ss_pred ccccccchhHHHHHHHHHHHHHHhCCcceeecC------CC---CCEEEEEEEEEcCCCC-CCceEEEEEEECCC-CCEE
Confidence 1 678999999999999999999964 22 5899999999998643 34577788888888 7777
Q ss_pred ceeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHHHh-cCCCCceEEEEecCCCchhHHHHHHHHHHHHHH
Q 013458 194 KYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRS-TNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQ 272 (442)
Q Consensus 194 ~y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f~~~-~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~ 272 (442)
+|.+....|.++++ +. + +.++.++|.+|++. ++.+|+||||||||+ +.++|+++|++
T Consensus 585 ~~~s~~~~~~~~E~-i~-l-------------~~~l~~~L~~y~~~n~~~lP~RIIiyRDG~-------v~~~El~~i~e 642 (771)
T 1u04_A 585 KIVPIKIGEQRGES-VD-M-------------NEFFKEMVDKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKY 642 (771)
T ss_dssp EEEEEECCCCSSSS-CC-H-------------HHHHHHHHHHHHHTTCCCTTCEEEEECSBC-------CCHHHHHHHHH
T ss_pred EEEEEEeecCCccE-Ec-H-------------HHHHHHHHHHHHHHhCCCCCCEEEEEcCCC-------CCHHHHHHHHH
Confidence 88765554555444 32 5 78999999999998 588999999999996 66899999999
Q ss_pred HHHhhcCCCCCCEEEEEEeeccccccccCCCCCCCCCCCCCCCCCeeeeccccccCCcCcEEEeeeC--CCcccccceee
Q 013458 273 ACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHA--GIQGTSRPTHY 350 (442)
Q Consensus 273 a~~~~~~~~~p~it~I~v~K~~~~Rff~~~~~~~~~~~~~~N~~~GTvvd~~i~~~~~~eFyL~s~~--~~~GTarP~~Y 350 (442)
||.+. .|+++||+|+||||+|||. + ++|||||+ . ||||+||. +.+||++|+||
T Consensus 643 a~~~~----~p~itfIvV~Krh~tRfF~-~------------~~pGTVV~-------~-DFyL~Sh~v~~~qGTprPthY 697 (771)
T 1u04_A 643 ISEMF----DIEVVTMDVIKNHPVRAFA-N------------MKMYFNLG-------G-AIYLIPHKLKQAKGTPIPIKL 697 (771)
T ss_dssp HHHHH----TCEEEEEEEESCCCCCBSS-C------------SCEEEEET-------T-EEEEECSCCSSSCSCCCCEEE
T ss_pred HHHhc----CCCEEEEEEEecCceeeec-C------------CCCeeEEe-------C-CEEEEeccccCCCCCCCCEEE
Confidence 99875 5899999999999999992 1 25899993 3 99999995 55999999999
Q ss_pred --EEEecCCCCC----HHHHHHHHHHhhhccCcCCC-CcccccchHHHHHHHHHHhhhhccc
Q 013458 351 --HVLYDENRFS----ADDFQVLTNNLCYTYARCTR-SVSIVPPAYYAHLAAFRARYYIEDE 405 (442)
Q Consensus 351 --~vl~d~~~~~----~d~lq~lt~~Lc~~~~~~~~-~islPapl~yA~~~a~r~~~~~~~~ 405 (442)
+|++|+++++ .|+||++||+|||+|+||++ ++|+|||+||||++|++++.++..+
T Consensus 698 ~~~Vi~D~~~~~~~~~~D~lq~lty~Lchlyyn~~~~svrvPAP~~YAhklA~lvgq~~~~~ 759 (771)
T 1u04_A 698 AKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISADMRLPAPVHYAHKFANAIRNEWKIK 759 (771)
T ss_dssp EEEEEEETTEEEECCCCHHHHHHHHHHHTCCTTCSSCCCCSCHHHHHHHHHHHHHHTTCCCC
T ss_pred EEEEEecCCCCCCCCCHHHHHHHHHHhhhhcccCCCCCccCCchHHHHHHHHHHHHhhhccC
Confidence 9999999999 99999999999999999998 9999999999999999999887643
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=100.00 E-value=3.3e-55 Score=449.53 Aligned_cols=334 Identities=13% Similarity=0.091 Sum_probs=242.5
Q ss_pred cccCccc--CeEEEEEecCCCCCChhHHHHHHHHHHHh---hcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCC
Q 013458 6 MFNGGRV--EVWTCVNFSTRLNRDVPFQFCQGLVDMCN---SKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQ 80 (442)
Q Consensus 6 f~~~~~l--~~W~iv~~~~~~~~~~~~~f~~~L~~~~~---~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 80 (442)
.+..... .+|++|+..+ +.+ |++.|.+... ..|+.+..+.. +.+.+.+++++..++ +
T Consensus 38 py~~~~~~~~~w~vI~~~~--~~~----~l~~l~~~~~~~~g~~f~~~~~~~------~~~~y~~~i~~~l~~------~ 99 (427)
T 2w42_A 38 PYEVPSLKYNQIALIHNNQ--FSS----LINQLKSQISSKIDEVWHIHNINI------SEFIYDSPHFDSIKS------Q 99 (427)
T ss_dssp CSBCCCCSSSEEEEEESCT--TCH----HHHHHHHHHHHHHHHTTCCCSCEE------EEEECSSSSHHHHHH------H
T ss_pred CCccCCCCCCEEEEEECcc--cHH----HHHHHHHhhhhcCCCceeecCCcC------ChHHHHHHHHHHhcC------C
Confidence 4444343 7999997543 333 5555554422 24455533211 111222223333221 4
Q ss_pred ceEEEEEe--------CCCCChhhHHHHHhhhhcCceeeeecccccccchh-hHHHHHHHHHHhhcCCeeeeeccccccC
Q 013458 81 LQMLIIIL--------PDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNM-QYFENVALKINVKVGGRNTVLVDAVQKR 151 (442)
Q Consensus 81 ~~~vlvil--------p~~~~~Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~-~~~~ni~~kinaKlGG~n~~l~~~~~~~ 151 (442)
+|++|||+ |+..+.|..+|+. +.+.|||||||..+|+.+.+. ++++||++|||+||||+||.|+..
T Consensus 100 ~~lvlvilp~~~~~~~~~~~~~~y~~K~~-~~~~gvptQ~I~~~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~---- 174 (427)
T 2w42_A 100 VDNAIDTGVDGIMLVLPEYNTPLYYKLKS-YLINSIPSQFMRYDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD---- 174 (427)
T ss_dssp HHHHHHHCCSEEEEEESSCCHHHHHHHHH-HHHTTSCEEEEEGGGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----
T ss_pred CCEEEEEEEccccccCCCCCcchHHHHHH-HhCCCcCcEEEEhhhcccccchhHHHHHHHHHHHHhCCcceecccC----
Confidence 89999999 5555455557864 589999999999999986554 558899999999999999999752
Q ss_pred CCccCCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccceeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHH
Q 013458 152 IPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRE 231 (442)
Q Consensus 152 ~p~~~~~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~ 231 (442)
.|. .++||||+||+|++++ +++|++...| .+...+......|..++|++++| ++++.+
T Consensus 175 ~~~---~~~miiGidv~h~~~~-----~v~g~a~v~~-~~g~~~~~~~~~~~~~~E~~~~l-------------~~~l~~ 232 (427)
T 2w42_A 175 PEK---GSDIIIGTGATRIDNV-----NLFCFAMVFK-KDGTMLWNEISPIVTSSEYLTYL-------------KSTIKK 232 (427)
T ss_dssp TTS---SCSEEEEEEEEESSSS-----EEEEEEEEEC-TTSCEEEEEECCCEEGGGHHHHH-------------HHHHHH
T ss_pred CCC---CCeEEEEEEEEEcCCC-----cEEEEEEEEc-CCCCEEEEEEEecCChhHHHHHH-------------HHHHHH
Confidence 122 5799999999998753 5666544445 33333444455566679999998 999999
Q ss_pred HHHHHHH-hcCCCCc--eEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcC----CCCCCEEEEEEeeccc-cccccCCC
Q 013458 232 LLIAFRR-STNFKPH--RIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEE----GYAPPVTFVVVQKRHH-TRLFPADH 303 (442)
Q Consensus 232 ~L~~f~~-~~g~~P~--~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~----~~~p~it~I~v~K~~~-~Rff~~~~ 303 (442)
+|..|++ .|+.+|+ ||||| ||+..+.++|+++|++||.+++. +++|+|+||+|+|||+ .|+|..++
T Consensus 233 aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~~a~~~~~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~~ 306 (427)
T 2w42_A 233 VVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILKETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPNN 306 (427)
T ss_dssp HHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHHHHHHHHHHTTSSCTTCEEEEEEEEECCCEEEEC----
T ss_pred HHHHHHHHhcCCCCCceEEEEE------eecccccHHHHHHHHHHHHHhccccccCCCCCEEEEEEEccccceeeecCCC
Confidence 9999999 9999888 77998 67778999999999999999865 7899999999999999 89886532
Q ss_pred CCCCCCCCCCCCCCeeeeccccccCCcCcEEEeeeCCCcc------c---ccceeeEEEec----CCCC-CHHHHHHHHH
Q 013458 304 NRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQG------T---SRPTHYHVLYD----ENRF-SADDFQVLTN 369 (442)
Q Consensus 304 ~~~~~~~~~~N~~~GTvvd~~i~~~~~~eFyL~s~~~~~G------T---arP~~Y~vl~d----~~~~-~~d~lq~lt~ 369 (442)
.+||+||||||.+ .+|||.++.+.|+ + ++|+||+|++| ++.+ +.|+||++||
T Consensus 307 --------~~nP~~GTvVd~~------~~~~l~~~~g~q~~~~~~~~~~~~~Pt~y~vi~d~~~~~~~~~~~d~lq~lty 372 (427)
T 2w42_A 307 --------RFHPYEGTKVKLS------SKRYLLTLLQPYLKRNGLEMVTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIY 372 (427)
T ss_dssp ------------CCSEEEESS------SSEEEEEEEC---------CEEEEEEEEEEEEEECCCTTTHHHHHHHHHHHHH
T ss_pred --------CCCCCCceEEEcC------CCeEEEEEEeeeccccccccccCCCCEEEEEEecCCcCcccCCCHHHHHHHHH
Confidence 3599999999973 3455555554444 3 34999999995 3444 5899999999
Q ss_pred HhhhccCcCCCCcccccchHHHHHHHHHHhhhhcc
Q 013458 370 NLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIED 404 (442)
Q Consensus 370 ~Lc~~~~~~~~~islPapl~yA~~~a~r~~~~~~~ 404 (442)
+|||+|++++.++++|||+||||++|+++.....-
T Consensus 373 ~L~~~nw~~t~~v~vPap~~YAhklA~l~~~~~~~ 407 (427)
T 2w42_A 373 YLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRY 407 (427)
T ss_dssp HHHTCCTTSSSCCSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HhhCcccCCCCCCCcCcchHhHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999986554
No 9
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.96 E-value=5.8e-30 Score=225.50 Aligned_cols=143 Identities=55% Similarity=0.993 Sum_probs=127.3
Q ss_pred CCCCcccCcccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhc---C
Q 013458 2 INKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQ---G 78 (442)
Q Consensus 2 ~~~~f~~~~~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~ 78 (442)
.|++|++|+++++|+++++++..+.+.++.|++.|.+.|+.+||.+.+|+.+.+...+++++++.|+.+++++.++ +
T Consensus 1 ~~kkf~~~~~l~~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 80 (147)
T 4g0x_A 1 SNKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQG 80 (147)
T ss_dssp CCCCEEECCEECSEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEECCGGGHHHHHHHHHHHHHHTSSTT
T ss_pred CCCEEecCCccCeEEEEEccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCeeeccCCChHHHHHHHHHHHHHHHhhcccC
Confidence 4789999999999999999865555788999999999999999999888766555567889999999998876542 3
Q ss_pred CCceEEEEEeCCCCCh-hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhhcCCeeeee
Q 013458 79 KQLQMLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVL 144 (442)
Q Consensus 79 ~~~~~vlvilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaKlGG~n~~l 144 (442)
.+++|||||+|++..+ |+.||+++|.+.||+||||..+++.+.+++++.||++|||+||||+|+.|
T Consensus 81 ~~~~lv~~il~~~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 81 KEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp CCCCEEEEEECSSCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHccCCCcccEEechhhhcCCCHHHHHHHHHHHHHhhCcccccC
Confidence 6899999999998777 99999999999999999999999988889999999999999999999864
No 10
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.96 E-value=6.1e-30 Score=223.17 Aligned_cols=139 Identities=66% Similarity=1.175 Sum_probs=124.0
Q ss_pred CCCCcccCcccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCc
Q 013458 2 INKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQL 81 (442)
Q Consensus 2 ~~~~f~~~~~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 81 (442)
.|++|++|+++++|++++|+++.+.+.+++|++.|.+.|+.+||.+.+||.+.....+++++++.|+.+++++ .++
T Consensus 1 ~~kkf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~e~~l~~~~~~~----~~~ 76 (139)
T 4g0o_A 1 SDKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIEEALLDIHKRA----PGL 76 (139)
T ss_dssp CCEEEEECCEECSEEEEECCSSSCTTHHHHHHHHHHHHHHHHTCEECSSCSSCCEECCGGGHHHHHHHHHHHC----TTC
T ss_pred CCCeEccCcccCeEEEEEccCCCCHHHHHHHHHHHHHHHHHcCCccCCCCEEeeecCCchhHHHHHHHHHHhc----CCC
Confidence 4789999999999999999755678899999999999999999999887755443445788899999888865 469
Q ss_pred eEEEEEeCCCCChhhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhhcCCeeeee
Q 013458 82 QMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVL 144 (442)
Q Consensus 82 ~~vlvilp~~~~~Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaKlGG~n~~l 144 (442)
+|||||+|+++.+|+.||+++|.+.||+||||..+++.+.+++++.||++|||+||||+|+.|
T Consensus 77 qlv~~ilp~~~~~Y~~iK~~~~~~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 77 QLLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp SEEEEECCSSSSCHHHHHCCCCCCCCCCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred cEEEEEECCCCCcHHHHHHHHhccCCcceEEechhhhcCCCHHHHHHHHHHHhhhhCcccCcC
Confidence 999999999866699999999999999999999999988889999999999999999999875
No 11
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.95 E-value=3.4e-28 Score=211.92 Aligned_cols=135 Identities=30% Similarity=0.510 Sum_probs=115.0
Q ss_pred CCCCcccCcccCeEEEEEecCC--CCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCC
Q 013458 2 INKKMFNGGRVEVWTCVNFSTR--LNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGK 79 (442)
Q Consensus 2 ~~~~f~~~~~l~~W~iv~~~~~--~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 79 (442)
||++|++|+++++|++++|++. .+.+.+++|++.|.+.|+.+||.+..+|.+......+++++..++.+.+.. .
T Consensus 1 ~~kkf~~~~~l~~Wavv~~~~~r~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~v~~~~~~l~~~~----~ 76 (138)
T 3luc_A 1 SNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTY----A 76 (138)
T ss_dssp --CCCCCCCCBCSEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSSCSEEEECCSGGGHHHHHHHHHHHC----T
T ss_pred CcCeecCCcccceEEEEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCCCeeeecCCcHHHHHHHHHHHHhcC----C
Confidence 6899999999999999998742 467789999999999999999999876654343445678888888776542 4
Q ss_pred CceEEEEEeCCCCCh-hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhhcCCee
Q 013458 80 QLQMLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRN 141 (442)
Q Consensus 80 ~~~~vlvilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaKlGG~n 141 (442)
+++|||||+|+ +.+ |+.||+++|.+.||+||||..+++.+.+++++.||++|||+||||+|
T Consensus 77 ~~qlv~~ilp~-~~~~Y~~iK~~~~~~~gv~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N 138 (138)
T 3luc_A 77 GLQLVVVILPG-KTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138 (138)
T ss_dssp TCCEEEEEECS-SCHHHHHHHHHHHTTSCCCEEEEEHHHHHSCCHHHHHHHHHHHHHHHSCC-
T ss_pred CCcEEEEEECC-CChHHHHHHHHhccCCCcceEEeCchhccCCCHHHHHHHHHHHhhccCCcC
Confidence 79999999997 455 99999999999999999999999988889999999999999999987
No 12
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.95 E-value=4e-28 Score=214.41 Aligned_cols=143 Identities=31% Similarity=0.513 Sum_probs=108.9
Q ss_pred CCCCcccCcccCeEEEEEecCCCC-CChhHHHHHHHHHHHhhcCcccCCCCeeccC----CCChhHHHHHHHHHHHHHhh
Q 013458 2 INKKMFNGGRVEVWTCVNFSTRLN-RDVPFQFCQGLVDMCNSKGMVFNPRPVIPIS----SSNPNQIEKALVDVHNRTAQ 76 (442)
Q Consensus 2 ~~~~f~~~~~l~~W~iv~~~~~~~-~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~ 76 (442)
.|++|++|+++++|+++++++... .+.+++|++.|.+.|+.+||.+++|.+.... ..+++++++.|+.+++++..
T Consensus 1 ~~kkf~~~~~l~~Wavv~~~~~~~~~~~~~~f~~~l~~~~~~~Gm~i~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (150)
T 4g0m_A 1 SKKGVTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQMEAPIVYKTSRMETLSNGNAIEELLRSVIDEASR 80 (150)
T ss_dssp --------CEECSEEEEETTTTTSTTCCCTTHHHHHHHHHHHTTCEECCCSEEEECCGGGGGCHHHHHHHHHHHHHHHHH
T ss_pred CCCeECCCcccCeEEEEEecCCcchhHHHHHHHHHHHHHHHHcCCccCCCceeeccccccccCchHHHHHHHHHHHHHHH
Confidence 378999999999999999875421 2489999999999999999999876543211 24678888899998887765
Q ss_pred c--CCCceEEEEEeCCCCChhhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhhcCCeeeee
Q 013458 77 Q--GKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVL 144 (442)
Q Consensus 77 ~--~~~~~~vlvilp~~~~~Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaKlGG~n~~l 144 (442)
+ +..|||+|||+|+++..|+.||+++|.+.||+||||..+++.+.++++++||++|||+||||+||.|
T Consensus 81 ~~~~~~pqlv~~ilp~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lkiN~KlGG~n~~l 150 (150)
T 4g0m_A 81 KHGGARPTLVLCAMSRKDDGYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150 (150)
T ss_dssp HTTTCCCCEEEEEESSCCTHHHHHHHCCCCCSCCEEEEEEHHHHSSSCHHHHHHHHHHHHHHC-------
T ss_pred hcCCCCCcEEEEEECCCCccHHHHHHHHhhccCcceEEeehhhccCCCHHHHHHHHHHHhhccCCccCcC
Confidence 3 2378999999999874599999999999999999999999999899999999999999999999865
No 13
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=87.62 E-value=7.2 Score=35.61 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=35.1
Q ss_pred ccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHHHHHHHhh
Q 013458 345 SRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARY 400 (442)
Q Consensus 345 arP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~~a~r~~~ 400 (442)
.+|+..++ ...++.|+-.+++-.+|- +--++|.|+..||++|++.+.
T Consensus 176 ~kPlyVS~---Gh~i~l~~A~~~v~~~~~------~~yRlPEP~R~Ad~~s~~~~~ 222 (225)
T 2w36_A 176 SAPIFVSP---GHLMDVESSKRLIKAFTL------PGRRIPEPTRLAHIYTQRLKK 222 (225)
T ss_dssp SCCEEEEE---CSSCCHHHHHHHHHHHCC------TTCSSCHHHHHHHHHHHHHTT
T ss_pred ccCEEEeC---CCCcCHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHHHhhh
Confidence 36764332 346899999999988762 235799999999999987655
No 14
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=83.41 E-value=12 Score=32.13 Aligned_cols=96 Identities=25% Similarity=0.282 Sum_probs=51.2
Q ss_pred CeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccc--eeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 013458 159 PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK--YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 236 (442)
Q Consensus 159 ~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~--y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f 236 (442)
|.-|-++|+||-.. .-+++++|.-.| +...+ |- .+.... +-.+|. .+|.|.|..-
T Consensus 17 P~RIE~fDiSh~~G----~~~VasmVVf~~-g~p~K~~YR-rf~I~~---~g~DDy--------------a~M~Evl~RR 73 (159)
T 2nrr_A 17 PYRIEGIDISHLQG----KYTVASLVVFED-GFPKKGDYR-RYKIEQ---DHPDDY--------------ESIRTVVKRR 73 (159)
T ss_dssp CCEEEEEEEECC-------CCEEEEEEEET-TEECGGGCE-EEEC--------CHH--------------HHHHHHHHHH
T ss_pred CCEEEEEECCccCC----ccceEEEEEEeC-CccChhhCc-eeecCC---CCCCHH--------------HHHHHHHHHH
Confidence 56899999999763 456777776555 32221 21 122211 112343 3445555444
Q ss_pred HHhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeec
Q 013458 237 RRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKR 293 (442)
Q Consensus 237 ~~~~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~ 293 (442)
.++- .+|+=|+| || +.||+. +.++++.+++. .+.+|-+.|+
T Consensus 74 ~~r~-~~PDLilI--DG-GkgQl~--------aA~~vl~elg~----~i~v~glAK~ 114 (159)
T 2nrr_A 74 YSKH-PLPNLLFV--DG-GIGQVN--------AAIEALKEIGK----DCPVVGLAKK 114 (159)
T ss_dssp HTTS-CCCSEEEE--SS-CHHHHH--------HHHHHHHHTTC----CCCEEEEC--
T ss_pred hccC-CCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CccEEEEEcC
Confidence 3322 68987766 66 456654 45788887743 2457777776
No 15
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=82.63 E-value=15 Score=33.67 Aligned_cols=44 Identities=23% Similarity=0.109 Sum_probs=33.9
Q ss_pred ccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHHHHHHH
Q 013458 345 SRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA 398 (442)
Q Consensus 345 arP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~~a~r~ 398 (442)
.+|+..++= ..++.|+-..++-.+| +.-++|.|++.||++|+++
T Consensus 180 ~kPlyVS~G---hrisl~~A~~~v~~~~-------~~yRlPEP~R~AD~lsr~~ 223 (237)
T 3goc_A 180 VKPVFVSVG---HRVDLDHACAHTLALT-------PKYRIPETTRRADSLCRRA 223 (237)
T ss_dssp SCCEEEEEE---ESCCHHHHHHHHHHTC-------SSCSSCHHHHHHHHHHHHH
T ss_pred ccCEEEecC---CCcCHHHHHHHHHHHc-------cCCCCCHHHHHHHHHHHHH
Confidence 578755542 3588999999998876 3457999999999999654
No 16
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=72.65 E-value=27 Score=31.63 Aligned_cols=96 Identities=24% Similarity=0.273 Sum_probs=54.5
Q ss_pred CeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCcc--ceeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 013458 159 PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVT--KYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 236 (442)
Q Consensus 159 ~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~--~y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f 236 (442)
|.-|=++|+||-.. .-+++++|.-.| +... .|- .+.... +-.+|. .+|.|.|..-
T Consensus 22 p~rIE~fDiSh~~G----~~~V~smVvf~~-g~p~k~~YR-rf~i~~---~g~DDy--------------a~m~Evl~RR 78 (220)
T 2nrt_A 22 PYRIEGIDISHLQG----KYTVASLVVFED-GFPKKGDYR-RYKIEQ---DHPDDY--------------ESIRTVVKRR 78 (220)
T ss_dssp CCEEEEEEEEEETT----TEEEEEEEEEET-TEECGGGCE-EEEEEC---SSCCHH--------------HHHHHHHHHH
T ss_pred CCEEEEEECCccCC----ccceEEEEEEeC-CccChhhCc-eeeCCC---CCCCHH--------------HHHHHHHHHH
Confidence 56899999999763 457777776555 3221 121 122221 111343 3344555443
Q ss_pred HHhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeec
Q 013458 237 RRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKR 293 (442)
Q Consensus 237 ~~~~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~ 293 (442)
..+- .+|+=|+| || +.||+. +.++++.+++- .+.+|-+.|+
T Consensus 79 ~~r~-~~PDLili--DG-GkgQl~--------~a~~vl~~lg~----~i~v~glaK~ 119 (220)
T 2nrt_A 79 YSKH-PLPNLLFV--DG-GIGQVN--------AAIEALKEIGK----DCPVVGLAKK 119 (220)
T ss_dssp HTTS-CCCSEEEE--SS-SHHHHH--------HHHHHHHHTTC----CCCEEEECTT
T ss_pred hccC-CCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CCeEEEEECC
Confidence 3322 68987776 76 456654 45788887743 2457778786
No 17
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=70.97 E-value=6.4 Score=36.41 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=41.2
Q ss_pred cccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHHHHHHHhhhhcc
Q 013458 344 TSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIED 404 (442)
Q Consensus 344 TarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~~a~r~~~~~~~ 404 (442)
..+|+-.++=| .++.|+-..++-++| .+.-++|.|++.||++|++.|..+..
T Consensus 184 ~~kPlyVS~Gh---~i~l~~A~~~v~~~~------~~~yRlPEP~R~AD~~a~~~r~~l~~ 235 (246)
T 3ga2_A 184 DVKPIFLSCGN---YIDLDSSYQITMSLI------NQESRLPIPVRLADLETHVLRTFYQK 235 (246)
T ss_dssp TSCCEEEEEEE---SSCHHHHHHHHHHTC------CTTCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeccC---CCCHHHHHHHHHHHc------cCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 36788666544 588999999998886 34568999999999999999886653
No 18
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=67.97 E-value=62 Score=29.38 Aligned_cols=102 Identities=23% Similarity=0.252 Sum_probs=54.8
Q ss_pred CeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccc--eeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 013458 159 PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK--YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 236 (442)
Q Consensus 159 ~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~--y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f 236 (442)
|.-|=++|+||-.. .-+++++|.-.| +...+ |- .+..... +-.+|. .+|.+++.+.....
T Consensus 14 p~rIE~fDiSh~~G----~~~V~smVvf~~-g~p~k~~YR-~f~i~~~--~g~DDy----------a~m~Evl~RR~~r~ 75 (226)
T 3c65_A 14 PRRIEAFDNSNIYG----ADPVSALVVFLD-GKPAKKEYR-KYKVKTV--AGPNDY----------ETMREVVRRRYTRV 75 (226)
T ss_dssp CSEEEEEEEEESSS----SSCEEEEEEEET-TEECGGGCE-EEECCCC--CTTCHH----------HHHHHHHHHHHHHH
T ss_pred CCEEEEEECCccCC----cCceEEEEEEeC-CccChhhCc-eeecCCC--CCCcHH----------HHHHHHHHHHHhhh
Confidence 67899999999763 456777777555 32221 21 1222110 111232 23355555554444
Q ss_pred HHhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHH-HhhcCCCCCCEEEEEEeec
Q 013458 237 RRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQAC-ASLEEGYAPPVTFVVVQKR 293 (442)
Q Consensus 237 ~~~~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~-~~~~~~~~p~it~I~v~K~ 293 (442)
.+....+|+=|+| || +.||+. +.++++ .+++- .+.+|-+.|.
T Consensus 76 ~~e~~~~PDLili--DG-GkgQl~--------~a~~vl~~~lg~----~i~v~glaK~ 118 (226)
T 3c65_A 76 LKEGLPLPDLIII--DG-GKGHLS--------AVRDVLENELGL----DVPLAGLAKD 118 (226)
T ss_dssp HHHTCCCCSEEEE--SS-CHHHHH--------HHHHHHHHTSCC----CCCEEEC---
T ss_pred hcccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHhcCC----CceEEEEEcC
Confidence 3333468997776 76 456654 457888 57743 2456777774
No 19
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=55.92 E-value=42 Score=31.56 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
.+.+.+++-.++.++++..|.|+++..-+.... |-..|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 14 ~i~~~~~~~v~~l~~~g~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~i~~lN~D 88 (281)
T 2c2x_A 14 EIFGDLKQRVAALDAAGRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPA--DISTATLNETIDELNAN 88 (281)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECT--TCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEeCCChhhHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHhcCC
Confidence 344444444444443345589998888876554 99888888889999999987653 12345566788888854
No 20
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=55.91 E-value=39 Score=32.13 Aligned_cols=78 Identities=23% Similarity=0.207 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhh-cCCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh--
Q 013458 62 QIEKALVDVHNRTAQ-QGKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK-- 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~-~~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK-- 136 (442)
.+.+.|+.-.++.++ .+..|.|+++++-+.... |-..|...+.+.||-+..+.... .....-+.+.+.++|.-
T Consensus 34 ~i~~~l~~~v~~l~~~~g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~--~~se~ell~~I~~LN~D~~ 111 (303)
T 4b4u_A 34 QIEENLLVRVEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQ--ETTTEQLLAEIEKLNANPD 111 (303)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECT--TCCHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCc--cCCHHHHHHHHHHhcCCCC
Confidence 344444444444433 257799999988876554 99999888899999999988753 12345566778888864
Q ss_pred cCCee
Q 013458 137 VGGRN 141 (442)
Q Consensus 137 lGG~n 141 (442)
.-|+.
T Consensus 112 V~GIl 116 (303)
T 4b4u_A 112 VHGIL 116 (303)
T ss_dssp CCEEE
T ss_pred ccEEE
Confidence 34543
No 21
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=54.86 E-value=4.6 Score=34.67 Aligned_cols=63 Identities=13% Similarity=0.218 Sum_probs=42.2
Q ss_pred HHHHHHHHhc-CCCCceEEEEecCCCchhHHHHHHHHH----HHHHHHHHhhcC----CCCCCEEEEEEeec
Q 013458 231 ELLIAFRRST-NFKPHRIIFYRDGVSEGQFSQVLLHEM----NAIRQACASLEE----GYAPPVTFVVVQKR 293 (442)
Q Consensus 231 ~~L~~f~~~~-g~~P~~IIiyRdGvsegq~~~v~~~Ei----~~i~~a~~~~~~----~~~p~it~I~v~K~ 293 (442)
+.|..|+++- +.+|...+||-|++++.+.......|+ +.++++|..++. =|.-.+|+|+..+.
T Consensus 46 ~eL~~WQ~~WRkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~ 117 (160)
T 3qbz_A 46 KELLEWQTNWKKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRS 117 (160)
T ss_dssp HHHHHHHHHHHHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSC
T ss_pred HHHHHHHHHHHHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCc
Confidence 4567777643 578878899999999875544444444 346678888864 35677887775543
No 22
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=53.29 E-value=48 Score=31.22 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHh--hc
Q 013458 62 QIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV--KV 137 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kina--Kl 137 (442)
.+.+.++.-.++.++++..|.|+++.+-+.... |-..|...+.+.||-+..+.... .....-+.+.+.++|. +.
T Consensus 15 ~i~~~~~~~v~~l~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~I~~lN~d~~v 92 (285)
T 3p2o_A 15 KIKEELKEKNQFLKSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNE--NITQNELLALINTLNHDDSV 92 (285)
T ss_dssp HHHHHHHHHHHHHHTTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECT--TCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCC--CCCHHHHHHHHHHHhCCCCC
Confidence 344444444444444345799998888876554 99999888899999999887653 1224456778888996 46
Q ss_pred CCeeee
Q 013458 138 GGRNTV 143 (442)
Q Consensus 138 GG~n~~ 143 (442)
-|++..
T Consensus 93 ~GIlvq 98 (285)
T 3p2o_A 93 HGILVQ 98 (285)
T ss_dssp CEEEEC
T ss_pred CEEEec
Confidence 677654
No 23
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=47.44 E-value=60 Score=30.81 Aligned_cols=78 Identities=18% Similarity=0.140 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhhcC--CCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh-
Q 013458 62 QIEKALVDVHNRTAQQG--KQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK- 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~~--~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK- 136 (442)
.+.+.+++-.++.++++ ..|.|+++..-+.... |-..|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 15 ~i~~~~~~~v~~l~~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~I~~lN~D~ 92 (301)
T 1a4i_A 15 QIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPR--TTTESEVMKYITSLNEDS 92 (301)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECT--TCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHhcCCC
Confidence 34444444444444322 4589999988877554 99999888889999999987653 12344566788888854
Q ss_pred -cCCee
Q 013458 137 -VGGRN 141 (442)
Q Consensus 137 -lGG~n 141 (442)
.-|+.
T Consensus 93 ~V~GIl 98 (301)
T 1a4i_A 93 TVHGFL 98 (301)
T ss_dssp TCCEEE
T ss_pred CCcEEE
Confidence 34443
No 24
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=44.74 E-value=65 Score=30.37 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhhcC-CCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh
Q 013458 62 QIEKALVDVHNRTAQQG-KQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~~-~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK 136 (442)
.+.+.+++-.++.++++ ..|.|+++..-+.... |-..|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 14 ~i~~~~~~~v~~l~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~I~~lN~D 89 (288)
T 1b0a_A 14 QVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPE--TTSEAELLELIDTLNAD 89 (288)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECT--TCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHhcCC
Confidence 34444444444444332 4589999888876554 99888888889999999887643 12244566778888854
No 25
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=42.69 E-value=93 Score=29.27 Aligned_cols=80 Identities=16% Similarity=0.158 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh--
Q 013458 62 QIEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK-- 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK-- 136 (442)
.+.+.++.-.++.+++ +..|.|+++.+-+.... |-..|...+.+.||-+..+.... .....-+.+.+.++|.-
T Consensus 16 ~i~~~~~~~v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~I~~lN~d~~ 93 (286)
T 4a5o_A 16 NLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPA--ETSQDDLLALIDRLNDDPA 93 (286)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECT--TCCHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCC--CCCHHHHHHHHHHHhCCCC
Confidence 3444444444444432 35699999888876554 99888888889999999887642 12244567788888863
Q ss_pred cCCeeee
Q 013458 137 VGGRNTV 143 (442)
Q Consensus 137 lGG~n~~ 143 (442)
.-|+...
T Consensus 94 v~GIlVq 100 (286)
T 4a5o_A 94 IDGILVQ 100 (286)
T ss_dssp CCEEEEC
T ss_pred CCEEEEc
Confidence 5566543
No 26
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=42.58 E-value=82 Score=29.85 Aligned_cols=80 Identities=20% Similarity=0.210 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhhc-C-CCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh-
Q 013458 62 QIEKALVDVHNRTAQQ-G-KQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK- 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~-~-~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK- 136 (442)
.+.+.++.-.++.+++ + ..|.|+++.+-+.... |-..|...+.+.||-+..+.... .....-+.+.+.++|.-
T Consensus 17 ~i~~~~~~~v~~l~~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~I~~lN~d~ 94 (300)
T 4a26_A 17 AIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPE--DISQEVLEVNVEKLNNDP 94 (300)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECT--TCCHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCC--CCCHHHHHHHHHHhcCCC
Confidence 3444444444444332 3 5799999988876544 99999888899999999887642 12344567788888854
Q ss_pred -cCCeeee
Q 013458 137 -VGGRNTV 143 (442)
Q Consensus 137 -lGG~n~~ 143 (442)
.-|+...
T Consensus 95 ~v~GIlVq 102 (300)
T 4a26_A 95 NCHGIIVQ 102 (300)
T ss_dssp TCCEEEEC
T ss_pred CCCEEEEc
Confidence 5666543
No 27
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=40.15 E-value=2.1e+02 Score=25.99 Aligned_cols=87 Identities=14% Similarity=0.018 Sum_probs=52.1
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh
Q 013458 15 WTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS 94 (442)
Q Consensus 15 W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~ 94 (442)
.+++.. .....-+..+++.+.+.+++.|+.+.- ... ....+...+.++.+.. .+++-+++.-.+....
T Consensus 5 Igvi~~--~~~~~~~~~~~~gi~~~a~~~g~~~~~---~~~-~~~~~~~~~~i~~l~~------~~vdgiIi~~~~~~~~ 72 (313)
T 3m9w_A 5 IGMAID--DLRLERWQKDRDIFVKKAESLGAKVFV---QSA-NGNEETQMSQIENMIN------RGVDVLVIIPYNGQVL 72 (313)
T ss_dssp EEEEES--CCSSSTTHHHHHHHHHHHHHTSCEEEE---EEC-TTCHHHHHHHHHHHHH------TTCSEEEEECSSTTSC
T ss_pred EEEEeC--CCCChHHHHHHHHHHHHHHHcCCEEEE---ECC-CCCHHHHHHHHHHHHH------cCCCEEEEeCCChhhh
Confidence 344532 345667889999999999999988632 111 2233333344554444 5788766654443322
Q ss_pred hhHHHHHhhhhcCceeeeecc
Q 013458 95 YGRIKRVCETELGIVSQCCQP 115 (442)
Q Consensus 95 Y~~iK~~~~~~~gI~TQ~i~~ 115 (442)
-..++++ .+.|||.-++..
T Consensus 73 ~~~~~~~--~~~~iPvV~~~~ 91 (313)
T 3m9w_A 73 SNVVKEA--KQEGIKVLAYDR 91 (313)
T ss_dssp HHHHHHH--HTTTCEEEEESS
T ss_pred HHHHHHH--HHCCCeEEEECC
Confidence 4566653 456899877754
No 28
>2qh9_A UPF0215 protein AF_1433; structural genomics, PSI-2, MCSG, PR structure initiative; 1.80A {Archaeoglobus fulgidus}
Probab=38.96 E-value=27 Score=30.73 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHHHHHHH
Q 013458 358 RFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA 398 (442)
Q Consensus 358 ~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~~a~r~ 398 (442)
+++.++..+++-.+|- --++|.|+.+||++|...
T Consensus 142 Gi~l~~A~~iv~~~~~-------~~riPEPlR~Ahlia~~~ 175 (184)
T 2qh9_A 142 GLTPSEAEKLVKASLI-------KGNMPEPVRISHLVASAI 175 (184)
T ss_dssp SSCHHHHHHHHHHHCS-------SSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcc-------cCCCchhHHHHHHHHHhh
Confidence 4899999999888752 237999999999999654
No 29
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=38.37 E-value=1e+02 Score=29.00 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhc-CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh--c
Q 013458 63 IEKALVDVHNRTAQQ-GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK--V 137 (442)
Q Consensus 63 ~~~~l~~~~~~~~~~-~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK--l 137 (442)
+.+.++.-.++.+++ +..|.|+++..-+.... |-..|...+.+.||-+..+.... .....-+...+.++|.- .
T Consensus 16 i~~~~~~~v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~I~~lN~d~~v 93 (285)
T 3l07_A 16 LKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPE--HTTESELLELIDQLNNDSSV 93 (285)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECT--TCCHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEECCC--CCCHHHHHHHHHHHhCCCCC
Confidence 334444433333332 35799999988876554 99999888889999999887642 12244567788888864 5
Q ss_pred CCeeee
Q 013458 138 GGRNTV 143 (442)
Q Consensus 138 GG~n~~ 143 (442)
-|+...
T Consensus 94 ~GIlvq 99 (285)
T 3l07_A 94 HAILVQ 99 (285)
T ss_dssp CEEEEC
T ss_pred cEEEEc
Confidence 666543
No 30
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=33.11 E-value=1.2e+02 Score=29.03 Aligned_cols=75 Identities=8% Similarity=0.146 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHhhcC--CCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh-
Q 013458 62 QIEKALVDVHNRTAQQG--KQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK- 136 (442)
Q Consensus 62 ~~~~~l~~~~~~~~~~~--~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK- 136 (442)
.+.+.+++-.++.+.++ ..|.|+++...+.... |...|...+.+.||.+..+.... ..-+.+.+.++|.-
T Consensus 16 ~i~~~~~~~v~~l~~~~~~~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~l~~-----~~~l~~~i~~lN~d~ 90 (320)
T 1edz_A 16 TFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVIED-----KDFLEEAIIQANGDD 90 (320)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCEEEEEECCCCHHHHHHHHHHHHHHHHHTCEEEEEECSS-----GGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEEEECCchhHHHHHHHHHHHHHHcCCEEEEEECCC-----hHHHHHHHHHHcCCC
Confidence 34444444444443322 4588888888776554 99999888889999999887652 14466788888853
Q ss_pred -cCCee
Q 013458 137 -VGGRN 141 (442)
Q Consensus 137 -lGG~n 141 (442)
.-|+.
T Consensus 91 ~v~GIl 96 (320)
T 1edz_A 91 SVNGIM 96 (320)
T ss_dssp TCCEEE
T ss_pred CCCEEE
Confidence 34443
No 31
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=32.26 E-value=2.7e+02 Score=24.73 Aligned_cols=88 Identities=6% Similarity=-0.013 Sum_probs=51.8
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCC
Q 013458 14 VWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSG 93 (442)
Q Consensus 14 ~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~ 93 (442)
.-+++. +..+..-...+.+.+.+.+++.|+.+.- ... ....+...+.++.+.+ .+++-+++...+...
T Consensus 10 ~Ig~i~--~~~~~~~~~~~~~gi~~~a~~~g~~~~~---~~~-~~~~~~~~~~~~~l~~------~~vdgiI~~~~~~~~ 77 (293)
T 3l6u_A 10 IVGFTI--VNDKHEFAQRLINAFKAEAKANKYEALV---ATS-QNSRISEREQILEFVH------LKVDAIFITTLDDVY 77 (293)
T ss_dssp EEEEEE--SCSCSHHHHHHHHHHHHHHHHTTCEEEE---EEC-SSCHHHHHHHHHHHHH------TTCSEEEEECSCTTT
T ss_pred EEEEEE--ecCCcHHHHHHHHHHHHHHHHcCCEEEE---ECC-CCCHHHHHHHHHHHHH------cCCCEEEEecCChHH
Confidence 344443 2345667888999999999999998732 111 2233333445555544 578876665443322
Q ss_pred hhhHHHHHhhhhcCceeeeecc
Q 013458 94 SYGRIKRVCETELGIVSQCCQP 115 (442)
Q Consensus 94 ~Y~~iK~~~~~~~gI~TQ~i~~ 115 (442)
.-..++++ .+.|||.-++..
T Consensus 78 ~~~~~~~~--~~~~iPvV~~~~ 97 (293)
T 3l6u_A 78 IGSAIEEA--KKAGIPVFAIDR 97 (293)
T ss_dssp THHHHHHH--HHTTCCEEEESS
T ss_pred HHHHHHHH--HHcCCCEEEecC
Confidence 13556654 356888777754
No 32
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=31.24 E-value=1.4e+02 Score=27.88 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=42.8
Q ss_pred CCCceEEEEEeCCCCCh--hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhh--cCCee
Q 013458 78 GKQLQMLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK--VGGRN 141 (442)
Q Consensus 78 ~~~~~~vlvilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaK--lGG~n 141 (442)
+..|.|+++..-+.... |-..|...+.+.|| +..+.... .....-+.+.+.++|.- .-|+.
T Consensus 25 ~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi-~~~~~lp~--~~s~~ell~~I~~lN~D~~v~GIl 89 (276)
T 3ngx_A 25 GLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI-AVDLEKYD--DISMKDLLKRIDDLAKDPQINGIM 89 (276)
T ss_dssp TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTC-EEEEEEES--SCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCCe-EEEEECCC--CCCHHHHHHHHHHHcCCCCCcEEE
Confidence 46799999888776554 99999888889999 87776542 12234566777888854 34443
No 33
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=30.74 E-value=2.3e+02 Score=25.43 Aligned_cols=79 Identities=5% Similarity=-0.075 Sum_probs=48.5
Q ss_pred CCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh-hhHHHHH
Q 013458 23 RLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS-YGRIKRV 101 (442)
Q Consensus 23 ~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~-Y~~iK~~ 101 (442)
.....-...+.+.+.+.++++|+.+. +.. ...++...+.++.+.+ .++|-+++. |..... -..++++
T Consensus 11 ~~~~~~~~~~~~gi~~~a~~~g~~~~---~~~--~~~~~~~~~~i~~l~~------~~vdgiii~-~~~~~~~~~~~~~~ 78 (306)
T 8abp_A 11 QPEEPWFQTEWKFADKAGKDLGFEVI---KIA--VPDGEKTLNAIDSLAA------SGAKGFVIC-TPDPKLGSAIVAKA 78 (306)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHTEEEE---EEE--CCSHHHHHHHHHHHHH------TTCCEEEEE-CSCGGGHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHcCCEEE---EeC--CCCHHHHHHHHHHHHH------cCCCEEEEe-CCCchhhHHHHHHH
Confidence 34566788889999999999998872 221 1233333444555444 468866554 433233 3446643
Q ss_pred hhhhcCceeeeecc
Q 013458 102 CETELGIVSQCCQP 115 (442)
Q Consensus 102 ~~~~~gI~TQ~i~~ 115 (442)
.+.|||.-++..
T Consensus 79 --~~~~iPvV~~~~ 90 (306)
T 8abp_A 79 --RGYDMKVIAVDD 90 (306)
T ss_dssp --HHTTCEEEEESS
T ss_pred --HHCCCcEEEeCC
Confidence 457999888874
No 34
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=29.56 E-value=2.4e+02 Score=25.30 Aligned_cols=89 Identities=12% Similarity=0.076 Sum_probs=53.0
Q ss_pred eEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCC
Q 013458 14 VWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSG 93 (442)
Q Consensus 14 ~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~ 93 (442)
+.+++.. ..+..-+..+++.+.+.+++.|+.+.- ........+...+.++.+.+ .+++-+++.-.+...
T Consensus 6 ~I~~i~~--~~~~~~~~~~~~gi~~~a~~~g~~~~~---~~~~~~~~~~~~~~i~~l~~------~~vdgiIi~~~~~~~ 74 (305)
T 3g1w_A 6 TYMMITF--QSGMDYWKRCLKGFEDAAQALNVTVEY---RGAAQYDIQEQITVLEQAIA------KNPAGIAISAIDPVE 74 (305)
T ss_dssp EEEEEES--STTSTHHHHHHHHHHHHHHHHTCEEEE---EECSSSCHHHHHHHHHHHHH------HCCSEEEECCSSTTT
T ss_pred eEEEEEc--cCCChHHHHHHHHHHHHHHHcCCEEEE---eCCCcCCHHHHHHHHHHHHH------hCCCEEEEcCCCHHH
Confidence 4455543 346678889999999999999988731 11122234444455555554 368866554333322
Q ss_pred hhhHHHHHhhhhcCceeeeecc
Q 013458 94 SYGRIKRVCETELGIVSQCCQP 115 (442)
Q Consensus 94 ~Y~~iK~~~~~~~gI~TQ~i~~ 115 (442)
.-..++++ .+.|||.-++..
T Consensus 75 ~~~~~~~~--~~~~iPvV~~~~ 94 (305)
T 3g1w_A 75 LTDTINKA--VDAGIPIVLFDS 94 (305)
T ss_dssp THHHHHHH--HHTTCCEEEESS
T ss_pred HHHHHHHH--HHCCCcEEEECC
Confidence 24566654 356888777764
No 35
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=25.28 E-value=3.6e+02 Score=24.04 Aligned_cols=81 Identities=6% Similarity=-0.027 Sum_probs=48.2
Q ss_pred CCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCC-CChhHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCCh-hhHHHH
Q 013458 23 RLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISS-SNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGS-YGRIKR 100 (442)
Q Consensus 23 ~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~-Y~~iK~ 100 (442)
..+..-...+.+.+.+.+++.|+.+.- ..... ..++...+.++.+.. .++|-+++ .|..... -..+++
T Consensus 12 ~~~~~~~~~~~~gi~~~a~~~g~~~~~---~~~~~~~~~~~~~~~i~~l~~------~~vdgiii-~~~~~~~~~~~~~~ 81 (297)
T 3rot_A 12 GSQDPYWTSLFQGAKKAAEELKVDLQI---LAPPGANDVPKQVQFIESALA------TYPSGIAT-TIPSDTAFSKSLQR 81 (297)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTCEEEE---ECCSSSCCHHHHHHHHHHHHH------TCCSEEEE-CCCCSSTTHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHhCcEEEE---ECCCCcCCHHHHHHHHHHHHH------cCCCEEEE-eCCCHHHHHHHHHH
Confidence 345667888999999999999988731 11111 133443445555444 56886655 4433332 445664
Q ss_pred HhhhhcCceeeeecc
Q 013458 101 VCETELGIVSQCCQP 115 (442)
Q Consensus 101 ~~~~~~gI~TQ~i~~ 115 (442)
+ .+.|||.-++..
T Consensus 82 ~--~~~giPvV~~~~ 94 (297)
T 3rot_A 82 A--NKLNIPVIAVDT 94 (297)
T ss_dssp H--HHHTCCEEEESC
T ss_pred H--HHCCCCEEEEcC
Confidence 3 356888877754
No 36
>3nqi_A Putative lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.87A {Bacteroides fragilis}
Probab=21.39 E-value=50 Score=30.32 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCC-CCceEEEEe
Q 013458 229 IRELLIAFRRSTNF-KPHRIIFYR 251 (442)
Q Consensus 229 ~~~~L~~f~~~~g~-~P~~IIiyR 251 (442)
|..+|.+|+..+|. +|.+|+|.-
T Consensus 196 Is~~l~aFk~k~G~~~PtkI~V~a 219 (246)
T 3nqi_A 196 ISQILREYTLKSGQTKPAKITIVA 219 (246)
T ss_dssp CHHHHHHHHHHHCCSSCSEEEEEE
T ss_pred HHHHHHHHHHhcCCcCCcEEEEEE
Confidence 35679999999997 799999964
No 37
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=21.26 E-value=74 Score=25.77 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=32.2
Q ss_pred CCCcccCcccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCC
Q 013458 3 NKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPR 50 (442)
Q Consensus 3 ~~~f~~~~~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~ 50 (442)
+-||+.+.+..-=+..... +.+.|++|.+-+.+.+.+.|+.....
T Consensus 67 ~aKFvnGkp~~iEa~y~m~---s~~~WdRFMRFMeRYA~~Ngl~f~k~ 111 (120)
T 2kvo_A 67 KGKFINGRPTAIEATVILN---SQPEWDRFMRFMERYGAENGLGFSKS 111 (120)
T ss_dssp EEEEETTEEEEEEEEEEEC---SSHHHHHHHHHHHHHHHHCCSSSCST
T ss_pred ceEEECCceeEEEEEEEEC---CHHHHHHHHHHHHHHHHhcCCccccC
Confidence 3467777554332333232 57899999999999999999998654
No 38
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=21.04 E-value=32 Score=27.75 Aligned_cols=14 Identities=43% Similarity=0.776 Sum_probs=11.7
Q ss_pred cCCCCceEEEEecC
Q 013458 240 TNFKPHRIIFYRDG 253 (442)
Q Consensus 240 ~g~~P~~IIiyRdG 253 (442)
.|..|.+|+|||.-
T Consensus 62 ~g~~p~rI~lYR~P 75 (114)
T 3e11_A 62 GGVLPDRIIIYRNT 75 (114)
T ss_dssp SCBCCEEEEEEHHH
T ss_pred CCCCCCEEEEehHH
Confidence 36789999999974
No 39
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=20.63 E-value=2.9e+02 Score=24.65 Aligned_cols=80 Identities=13% Similarity=0.071 Sum_probs=47.2
Q ss_pred CCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCC-CChhHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCChhhHHHHH
Q 013458 23 RLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISS-SNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRV 101 (442)
Q Consensus 23 ~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp~~~~~Y~~iK~~ 101 (442)
.....-+..+++.+.+.++++|+.+.- ..... ...+...+.++.+.. .+++-+++.-.+....-..++++
T Consensus 14 ~~~~~~~~~~~~g~~~~a~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~------~~vdgiii~~~~~~~~~~~~~~~ 84 (304)
T 3o1i_D 14 HLKDSYWLSVNYGMVSEAEKQGVNLRV---LEAGGYPNKSRQEQQLALCTQ------WGANAIILGTVDPHAYEHNLKSW 84 (304)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHTCEEEE---EECSSTTCHHHHHHHHHHHHH------HTCSEEEECCSSTTSSTTTHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCeEEE---EcCCCCCCHHHHHHHHHHHHH------cCCCEEEEeCCChhHHHHHHHHH
Confidence 345667888999999999999988632 11111 133344445555554 36886665533322113456653
Q ss_pred hhhhcCceeeeec
Q 013458 102 CETELGIVSQCCQ 114 (442)
Q Consensus 102 ~~~~~gI~TQ~i~ 114 (442)
. .|||.-++.
T Consensus 85 --~-~~iPvV~~~ 94 (304)
T 3o1i_D 85 --V-GNTPVFATV 94 (304)
T ss_dssp --T-TTSCEEECS
T ss_pred --c-CCCCEEEec
Confidence 3 788887773
Done!