BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013459
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+ AE K + N +K K + AI FY++AI+LN +NA YY NR+ AYL + + A D
Sbjct: 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 63
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
T+AI LDKK +K Y RR + LG ++ A+ D+ + ++P +K A + K+
Sbjct: 64 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 120
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+ AE K + N +K K + AI FY++AI+LN +NA YY NR+ AYL + + A D
Sbjct: 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 70
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
T+AI LDKK +K Y RR + LG ++ A+ D+ + ++P +K A + K+
Sbjct: 71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 127
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+ AE K + N +K K + AI FY++AI+LN +NA YY NR+ AYL + + A D
Sbjct: 19 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDA 78
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
T+AI LDKK +K Y RR + LG ++ A+ D+ + ++P +K A + K+
Sbjct: 79 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 135
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 63/106 (59%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384
SAE K GN YK + KAI +Y +A++L+ NNA+ + N AY + G + +A
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
KA+ LD N KA+ RRG A G Y++AIED+ AL L+P N +A
Sbjct: 68 KALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
GN YK + KAI +Y +A++L+ NNA + R AY + G + +A D KA+ LD
Sbjct: 50 GNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Query: 393 NVKAYLRRGTAREMLG 408
N KA G A++ G
Sbjct: 110 NAKAKQNLGNAKQKQG 125
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 357 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIED 416
GN+A + N AY + G + +A KA+ LD N A+ G A G Y++AIE
Sbjct: 6 GNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEY 65
Query: 417 FSYALVLEPTNKRA 430
+ AL L+P N +A
Sbjct: 66 YQKALELDPNNAKA 79
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 61/103 (59%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
AE K +GN+ K + + A+ FY +AI+LN NA Y+ NRAAAY + G++ A DC +
Sbjct: 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
AI +D KAY R G A L + EA+ + AL L+P N+
Sbjct: 72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 117/276 (42%), Gaps = 26/276 (9%)
Query: 21 SLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80
SLG DT G +R+P+ F G++GF+PSYG VS G +P+S S D G R + + +
Sbjct: 163 SLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEI 222
Query: 81 LL--QLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENL-GEY 137
L +P ++P + +P D + + K F R + L E
Sbjct: 223 LAGESIPLEGVQNP-----------VFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEV 271
Query: 138 FDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEIS 197
+ +P L+G ++ RL+ RYE H + ++ P + + L ++
Sbjct: 272 REVSLP-LEGVYEV------YTRLV-RYEAARIHEKALKEHPEGFSPQVREALLAGLALT 323
Query: 198 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQN---RAFSL 254
E + + R +R + L+ L+ P P P LG +E+ E + AF
Sbjct: 324 EKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFIT 383
Query: 255 LSIA-SVSGCCQVTVPLGYYDKCPTSVSFIARHGGD 289
L++ S+ G + +P + P + + +G D
Sbjct: 384 LTLPFSLLGVPTLALPFAKVEGXPVGLQVVGAYGED 419
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
A + K KGN+ ++ + +A+ YTEAIK N +A YSNRAA Y + F A DC +
Sbjct: 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75
Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM 442
I L+ +K Y R+ A E + Y +A++ + AL L+ + K A AD ++ M
Sbjct: 76 CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA---ADGYQRCMM 129
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 355 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 414
+N + A N+ + G + QA T+AI + K+ K Y R L ++ A+
Sbjct: 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLAL 70
Query: 415 EDFSYALVLEPT 426
+D + LEPT
Sbjct: 71 KDCEECIQLEPT 82
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 66.2 bits (160), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 56/106 (52%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384
SAE GN YK + +AI +Y +A++L+ NNA + N AY + G + +A
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
KA+ LD N +A+ G A G Y EAIE + AL L+P N A
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384
+AE GN YK + +AI +Y +A++L+ NNA + N AY + G + +A
Sbjct: 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 385 KAINLDKKNVKAYLRRGTAREMLG 408
KA+ LD N +A G A++ G
Sbjct: 102 KALELDPNNAEAKQNLGNAKQKQG 125
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 38/74 (51%)
Query: 357 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIED 416
GN+A + N AY + G + +A KA+ LD N +A+ G A G Y EAIE
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 417 FSYALVLEPTNKRA 430
+ AL L+P N A
Sbjct: 66 YQKALELDPNNAEA 79
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 132/319 (41%), Gaps = 54/319 (16%)
Query: 18 VDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHV 77
VDF++G D G +R+P+AFCG++G +P++G V + G PI ++D +G I R V
Sbjct: 184 VDFAIGGDQGGAIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLG------PITRTV 237
Query: 78 GHVLLQLPFAAQR---SPRQI--IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHE 132
L L A R PRQ + A D L D + +++ + FG V + E
Sbjct: 238 HDAALMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVR---EGFGHAVSQPE 294
Query: 133 NLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKN------------NHNEWIESVKP 180
+ + + SL T E+ N+ + + N + N + + +
Sbjct: 295 -VDDAVRAAAHSLTEIGCTVEEV-NIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEG 352
Query: 181 ALDPDISAE-----IGEMLEISETV------------------IENCKSIRNEMRSAISS 217
DP++ A I +SETV +++ R+A +
Sbjct: 353 LYDPELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARNLVPLARAAYDT 412
Query: 218 LLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIAS---VSGCCQVTVPLGYYD 274
L+ +LV PT Y +L K++ + +A +++ + V+G ++VP G +
Sbjct: 413 ALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVN 472
Query: 275 KCPTSVSFIARHGGDRFLL 293
P + RH D +L
Sbjct: 473 GLPVGMMITGRHFDDATVL 491
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEA 381
S E +++GN+ +K + A++ YT+A+ L+ + A + NRAA +L+ + +AE
Sbjct: 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAET 86
Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
+ +KAI D +VKA RR A E LG +A+ D + LEP NK
Sbjct: 87 EASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 132/319 (41%), Gaps = 54/319 (16%)
Query: 18 VDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHV 77
VDF++G D G +R+P+AFCG++G +P++G V + G PI ++D +G I R V
Sbjct: 184 VDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLG------PITRTV 237
Query: 78 GHVLLQLPFAAQR---SPRQI--IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHE 132
L L A R PRQ + A D L D + +++ + FG V + E
Sbjct: 238 HDAALMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVR---EGFGHAVSQPE 294
Query: 133 NLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKN------------NHNEWIESVKP 180
+ + + SL T E+ N+ + + N + N + + +
Sbjct: 295 -VDDAVRAAAHSLTEIGCTVEEV-NIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEG 352
Query: 181 ALDPDISAE-----IGEMLEISETV------------------IENCKSIRNEMRSAISS 217
DP++ A I +SETV +++ R+A +
Sbjct: 353 LYDPELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARNLVPLARAAYDT 412
Query: 218 LLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIAS---VSGCCQVTVPLGYYD 274
L+ +LV PT Y +L K++ + +A +++ + V+G ++VP G +
Sbjct: 413 ALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVN 472
Query: 275 KCPTSVSFIARHGGDRFLL 293
P + RH D +L
Sbjct: 473 GLPVGMMITGRHFDDATVL 491
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 17 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 72
LV SLG DT G +R P+A+CG++G +P+YG VS G++ ++SLD +G R+ K
Sbjct: 166 LVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVK 221
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 292 LLDTVQNMYASLQEQ--ADIATK--------SKLSTNTFNQKQSAEIAKEKGNQAYKDKQ 341
L T++ SL E ADI TK K + + AE A+ +G + +
Sbjct: 95 LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154
Query: 342 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401
W A+ YTE IK +A YSNRAAA + SF +A ADC KAI D V+AY+R+
Sbjct: 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 214
Query: 402 TAREMLGYYKEAIE 415
TA+ + Y A+E
Sbjct: 215 TAQIAVKEYASALE 228
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
A+ K +GN+ YK +Q+ +AI Y +A +L+ + TY +NRAAA E G + A +
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLND 63
Query: 386 AIN------LDKKNV-KAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426
A+ D K + K++ R G A LG K+ IE + +L T
Sbjct: 64 AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT 111
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
A+ K KGN+ +K + A+ Y EA+K + NA YSNRAA + F +A DC
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
I LD K +K Y+R+ + + +A + AL ++P+N+ A
Sbjct: 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
AE A+ +G + + W A+ YTE IK +A YSNRAAA + SF +A ADC K
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 415
AI D V+AY+R+ TA+ + Y A+E
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALE 93
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 36/49 (73%)
Query: 21 SLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 69
SLG DT G +R P++FCG++G +P+YG VS G++ ++SLD +G F R
Sbjct: 163 SLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGR 211
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384
SA+ KE+GN+ + +++ +A + Y AI N A YY+NRA YL+ QA ADC
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423
+A+ LD ++VKA+ G + + Y EAI + A L
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 306 QADIATKSKLSTNTFNQKQSAEIA-KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS 364
+ DIA LS + Q+Q+ + K +GN + K + +AI +Y AI+L+ N +YS
Sbjct: 7 EPDIAQLKGLSPS---QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYS 63
Query: 365 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFS 418
N +A Y+ +G + TKA+ + + KA LRR +A E LG + +A+ D S
Sbjct: 64 NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
KA++L+ + Y RG +L YK A EDF A L P N
Sbjct: 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 306 QADIATKSKLSTNTFNQKQSAEIA-KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS 364
+ DIA LS + Q+Q+ + K +GN + K + +AI +Y AI+L+ N +YS
Sbjct: 3 EPDIAQLKGLSPS---QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYS 59
Query: 365 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFS 418
N +A Y+ +G + TKA+ + + KA LRR +A E LG + +A+ D S
Sbjct: 60 NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 113
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
KA++L+ + Y RG +L YK A EDF A L P N
Sbjct: 297 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 339
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384
SA+ KE+GN+ + +++ +A + Y AI N A YY+NRA YL+ QA ADC
Sbjct: 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67
Query: 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423
+A+ LD ++VKA+ G + + Y EAI + A L
Sbjct: 68 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 52/98 (53%)
Query: 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
KEKGN+A A+ Y+EAIKL+ +N YSNR+AAY + G + +A D K ++L
Sbjct: 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 390 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
K Y R+ A E L ++EA + L E N
Sbjct: 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 50/95 (52%)
Query: 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
K +GN A K++ KAI YT+A+ + N Y SNRAAAY SG +A D A +
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 390 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424
D K KA+ R G AR + YK A E + + E
Sbjct: 75 DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 17 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF---ARDPKI 73
+V +LG DT G VR P++ CG++G++P+YG VS G++ ++SLD +G RD I
Sbjct: 153 MVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAI 212
Query: 74 LRHV 77
L +
Sbjct: 213 LMEI 216
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 25 DTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 69
DT G VR P+AFCG+ G +P+YG VS G+I ++SLD +G AR
Sbjct: 161 DTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMAR 205
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 22 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF---ARDPKILRHV 77
LG DT G VR P++ CG++G++P+YG VS G++ ++SLD +G RD IL +
Sbjct: 159 LGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEI 217
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
K+KGNQ +++K++ AI +Y A++L + +YSN +A Y+ G + TKA+ L
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL 68
Query: 390 DKKNVKAYLRRGTAREMLGYYKEAIEDFS 418
K LRR +A E LG + +A+ D S
Sbjct: 69 KPDYSKVLLRRASANEGLGKFADAMFDLS 97
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 94/242 (38%), Gaps = 42/242 (17%)
Query: 208 RNEMRSAISSLLKD----DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGC 263
RN + A+S L + D TPT P KE +D Q S+ S+AS G
Sbjct: 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQP---AKE--RKDKQENLPSVTSMASFFGI 170
Query: 264 CQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQK 323
+ + YD+ + D+ L++ + N+Y E D A +S ++
Sbjct: 171 FKPELTFANYDES---------NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISF-YTEAIKLNGNN----------ATYYSNRAAAYLE 372
Q +K N+ K K+ L AIS +T K N+ A R +Y+
Sbjct: 222 QL-----DKNNEDEKLKEKL-AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIY 275
Query: 373 SGSFLQAEADCT-------KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
+ D T KA+ LD N Y RG +L Y +A +DF A L+P
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335
Query: 426 TN 427
N
Sbjct: 336 EN 337
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 347 SFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399
+++ +A+KL+ NN++ Y +R ++ QA D KA LD +N+ Y++
Sbjct: 291 NYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
KE GN AYK K + A+ Y +A +L+ N TY +N+AA Y E G + + C KAI +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 390 DKKN-------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426
++N KAY R G + YK+AI ++ +L T
Sbjct: 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
KE GN AYK K + A+ Y +A +L+ N TY +N+AA Y E G + + C KAI +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 390 DKKN-------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426
++N KAY R G + YK+AI ++ +L T
Sbjct: 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 53/106 (50%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384
SAE GN YK + +AI +Y +A++L NNA + N AY + G + +A
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
KA+ L N +A+ G A G Y EAIE + AL L P N A
Sbjct: 68 KALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 113
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 357 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIED 416
GN+A + N AY + G + +A KA+ L N +A+ G A G Y EAIE
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 417 FSYALVLEPTNKRA 430
+ AL L P N A
Sbjct: 66 YQKALELYPNNAEA 79
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384
+AE GN YK + +AI +Y +A++L NNA + N AY + G + +A
Sbjct: 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 385 KAINLDKKNVKAYLRRGTAREMLG 408
KA+ L N +A G A++ G
Sbjct: 102 KALELYPNNAEAKQNLGNAKQKQG 125
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
KE GN AYK K + A+ Y +A +L+ N TY N+AA Y E G + + C KAI +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 390 DKKNVK-------AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
++N + AY R G + YK+AI ++ +L T K
Sbjct: 68 GRENREDYRMIAYAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPK 113
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 20 FSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 68
FSLG DT G RVP+AF ++G +P+ G +S G++P SLD V FA
Sbjct: 192 FSLGTDTAGSGRVPAAFNNLVGVKPTKGLLSTSGVVPACRSLDCVTVFA 240
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+SAE GN YK + +AI +Y +A++L+ +A + N AY + G + +A
Sbjct: 33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 92
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
KA+ LD ++ +A+ G A G Y EAIE + AL L+P
Sbjct: 93 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%)
Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
GN YK + +AI +Y +A++L+ +A + N AY + G + +A KA+ LD +
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ +A+ G A G Y EAIE + AL L+P + A
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+SAE GN YK + +AI +Y +A++L+ +A + N AY + G + +A
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Query: 384 TKAINLDKK 392
KA+ LD +
Sbjct: 127 QKALELDPR 135
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 16 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 69
+L ++G +T G + P+A G++G +P+ G VS GIIPIS S DT G AR
Sbjct: 176 NLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMAR 229
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
K+ GN AYK K + KA Y +AI+L+ +N T+Y+N+AA Y E F + C KA+ +
Sbjct: 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71
Query: 390 DKKN-------VKAYLRRGTA 403
++ KA R G A
Sbjct: 72 GRETRADYKLIAKAMSRAGNA 92
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 23/155 (14%)
Query: 300 YASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI------ 353
+ +E ++ TK KL + A I KEKG +K ++++A+ Y + +
Sbjct: 250 FEKAKESWEMDTKEKL--------EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME 301
Query: 354 -----KLNGNNATY----YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404
K + + ++ + N A YL+ + +A C KA+ LD N K RRG A+
Sbjct: 302 YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ 361
Query: 405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439
++ ++ A DF L + P NK A L +K
Sbjct: 362 LLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 23/148 (15%)
Query: 300 YASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI------ 353
+ +E ++ TK KL + A I KEKG +K ++++A+ Y + +
Sbjct: 250 FEKAKESWEMDTKEKL--------EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEME 301
Query: 354 -----KLNGNNATY----YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404
K + + ++ + N A YL+ + +A C KA+ LD N K RRG A+
Sbjct: 302 YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ 361
Query: 405 EMLGYYKEAIEDFSYALVLEPTNKRASL 432
++ ++ A DF L + P NK A L
Sbjct: 362 LLMNEFESAKGDFEKVLEVNPQNKAARL 389
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 37/288 (12%)
Query: 17 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILR 75
++ +LG T G V P+A+CG +PS+ + +G+ S +LDTVG F AR + R
Sbjct: 143 MIPLALGTQTGGSVIQPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 76 HVGHVLLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLK 130
+ + + F+ ++PR ++ + ++ A++ +Q IK+ E+ + +
Sbjct: 203 GLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDL 262
Query: 131 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 190
E + E + P ++ F R + +EF +H+E + P L + A +
Sbjct: 263 PEAVHEAWRIH-PIIQDF--------EAHRALA-WEFSEHHDE----IAPMLRASLDATV 308
Query: 191 GEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDY 247
G ++ + + I R + + + +L+T Y P + L+ +
Sbjct: 309 G----LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPR 360
Query: 248 QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 295
NR ++L+ G V VP+ P V IAR G D L T
Sbjct: 361 YNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 121/288 (42%), Gaps = 37/288 (12%)
Query: 17 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILR 75
++ +LG T G V P+A+CG +PS+ + +G+ S +LDTVG F AR + R
Sbjct: 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 76 HVGHVLLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLK 130
+ + + F+ ++PR ++ + ++ A++ +Q IK+ E+ + +
Sbjct: 203 GLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDL 262
Query: 131 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 190
E + E + P ++ F +EF +H+E + P L + A +
Sbjct: 263 PEAVHEAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATV 308
Query: 191 GEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDY 247
G ++ + + I R + + + +L+T Y P + L+ +
Sbjct: 309 G----LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPR 360
Query: 248 QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 295
NR ++L+ G V VP+ P V IAR G D L T
Sbjct: 361 YNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 37/288 (12%)
Query: 17 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILR 75
++ +LG T G V P+A+CG +PS+ + +G+ S +LDTVG F AR + R
Sbjct: 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 76 HVGHVLLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLK 130
+ + + F+ ++PR ++ + ++ A++ +Q IK+ E+ + +
Sbjct: 203 GLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDL 262
Query: 131 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 190
E + E + P ++ F R + +EF +H+E + P L + A +
Sbjct: 263 PEAVHEAWRIH-PIIQDF--------EAHRALA-WEFSEHHDE----IAPMLRASLDATV 308
Query: 191 GEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDY 247
G ++ + + I R + + + +L+T Y P + L+ +
Sbjct: 309 G----LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPR 360
Query: 248 QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 295
NR ++L+ G V VP+ P V IAR G D L T
Sbjct: 361 YNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 37/288 (12%)
Query: 17 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILR 75
++ +LG T G V P+A+CG +PS+ + +G+ S +LDTVG F AR + R
Sbjct: 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 76 HVGHVLLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLK 130
+ + + F+ ++PR ++ + ++ A++ +Q IK+ E+ + +
Sbjct: 203 GLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDL 262
Query: 131 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 190
E + E + P ++ F R + +EF +H+E + P L + A +
Sbjct: 263 PEAVHEAWRIH-PIIQDF--------EAHRALA-WEFSEHHDE----IAPMLRASLDATV 308
Query: 191 GEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDY 247
G ++ + + I R + + + +L+T Y P + L+ +
Sbjct: 309 G----LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPR 360
Query: 248 QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 295
NR ++L+ G V VP+ P V IAR G D L T
Sbjct: 361 YNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 37/288 (12%)
Query: 17 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILR 75
++ +LG T G V P+A+CG +PS+ + +G+ S +LDTVG F AR + R
Sbjct: 143 MIPLALGAQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 76 HVGHVLLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLK 130
+ + + F+ ++PR ++ + ++ A++ +Q IK+ E+ + +
Sbjct: 203 GLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDL 262
Query: 131 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 190
E + E + P ++ F R + +EF +H+E + P L + A +
Sbjct: 263 PEAVHEAWRIH-PIIQDF--------EAHRALA-WEFSEHHDE----IAPMLRASLDATV 308
Query: 191 GEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDY 247
G ++ + + I R + + + +L+T Y P + L+ +
Sbjct: 309 G----LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPR 360
Query: 248 QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 295
NR ++L+ G V VP+ P V IAR G D L T
Sbjct: 361 YNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 37/288 (12%)
Query: 17 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILR 75
++ +LG T G V P+A+CG +PS+ + +G+ S +LDTVG F AR + R
Sbjct: 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 76 HVGHVLLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLK 130
+ + + F+ ++PR ++ + ++ A++ +Q IK+ E+ + +
Sbjct: 203 GLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDL 262
Query: 131 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 190
E + E + P ++ F R + +EF +H+E + P L + A +
Sbjct: 263 PEAVHEAWRIH-PIIQDF--------EAHRALA-WEFSEHHDE----IAPMLRASLDATV 308
Query: 191 GEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDY 247
G ++ + + I R + + + +L+T Y P + L+ +
Sbjct: 309 G----LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPR 360
Query: 248 QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 295
NR ++L+ G V VP+ P V IAR G D L T
Sbjct: 361 YNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 37/288 (12%)
Query: 17 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILR 75
++ +LG T G V P+A+CG +PS+ + +G+ S +LDTVG F AR + R
Sbjct: 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 76 HVGHVLLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLK 130
+ + + F+ ++PR ++ + ++ A++ +Q IK+ E+ + +
Sbjct: 203 GLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDL 262
Query: 131 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 190
E + E + P ++ F R + +EF +H+E + P L + A +
Sbjct: 263 PEAVHEAWRIH-PIIQDF--------EAHRALA-WEFSEHHDE----IAPMLRASLDATV 308
Query: 191 GEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDY 247
G ++ + + I R + + + +L+T Y P + L+ +
Sbjct: 309 G----LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPR 360
Query: 248 QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 295
NR ++L+ G V VP+ P V IAR G D L T
Sbjct: 361 YNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 37/288 (12%)
Query: 17 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILR 75
++ +LG T G V P+A+CG +PS+ + +G+ S +LDTVG F AR + R
Sbjct: 143 MIPLALGTQTGGXVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202
Query: 76 HVGHVLLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLK 130
+ + + F+ ++PR ++ + ++ A++ +Q IK+ E+ + +
Sbjct: 203 GLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDL 262
Query: 131 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 190
E + E + P ++ F R + +EF +H+E + P L + A +
Sbjct: 263 PEAVHEAWRIH-PIIQDF--------EAHRALA-WEFSEHHDE----IAPMLRASLDATV 308
Query: 191 GEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDY 247
G ++ + + I R + + + +L+T Y P + L+ +
Sbjct: 309 G----LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPR 360
Query: 248 QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 295
NR ++L+ G V VP+ P V IAR G D L T
Sbjct: 361 YNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%)
Query: 357 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIED 416
GN+A + N AY + G + +A KA+ LD N +A+ G A G Y EAIE
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 417 FSYALVLEPTNKRA 430
+ AL L+P N A
Sbjct: 66 YQKALELDPNNAEA 79
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384
SAE GN YK + +AI +Y +A++L+ NNA + N AY + G + +A
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 385 KAINLDKKNVKAYLRRGTAREMLG 408
KA+ LD N +A G A++ G
Sbjct: 68 KALELDPNNAEAKQNLGNAKQKQG 91
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 311 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYT---------------EAIKL 355
K N+ + + + I KE+G +K+ ++ +A+ Y EA K
Sbjct: 132 AKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA 191
Query: 356 NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 415
+ N A +L+ +F A C KA+ LD N K RRG A + ++ A
Sbjct: 192 QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARA 251
Query: 416 DFSYALVLEPTNKRA 430
DF L L P NK A
Sbjct: 252 DFQKVLQLYPNNKAA 266
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEA------------------IKLNGNNATYYSN 365
+S E ++KGN+ + K + +AI Y +A ++L+ N Y+N
Sbjct: 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68
Query: 366 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
+ YL G +AE ++ + ++ N KA RR AR EA ED L P
Sbjct: 69 MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 311 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYT---------------EAIKL 355
K N+ + + + I KE+G +K+ ++ +A+ Y EA K
Sbjct: 132 AKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA 191
Query: 356 NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 415
+ N A +L+ +F A C KA+ LD N K RRG A + ++ A
Sbjct: 192 QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARA 251
Query: 416 DFSYALVLEPTNKRA 430
DF L L P NK A
Sbjct: 252 DFQKVLQLYPNNKAA 266
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 16/119 (13%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIK-LNGNNATYYS---------------NRAAA 369
+E K GN +K + W AI YT+ ++ + G+ A N A
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282
Query: 370 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
L+ + A C +A+ +D N KA RR + L Y +A+ D A + P +K
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS----------------NRA 367
QSA KE+GN+ +K + +AI Y EA+ + + N A
Sbjct: 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95
Query: 368 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
Y ++ + +A +K + +DK NVKA + G A G+ +EA E+ A L P N
Sbjct: 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 23 GIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTV------GWFAR 69
G D G VR+P++ CG++G +P+ G +S P+ T D V G FAR
Sbjct: 168 GNDAAGAVRIPASVCGVVGLKPTRGRISPG---PLVTDSDNVAGAAHEGLFAR 217
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 23 GIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTV------GWFAR 69
G D G VR+P++ CG++G +P+ G +S P+ T D V G FAR
Sbjct: 168 GNDAAGSVRIPASVCGVVGLKPTRGRISPG---PLVTDSDNVAGAAHEGLFAR 217
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY-----------------YSNRA 367
+A+ K GN +K+++ +A+ Y AI G++ + + N A
Sbjct: 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIA 237
Query: 368 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
A ++ + +A C + ++KN KA RRG A+ LG A +DF A P +
Sbjct: 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297
Query: 428 K 428
K
Sbjct: 298 K 298
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 386
E KE+GN +K + +A+ Y + I N YSN+A A ++ G + QA C +
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64
Query: 387 I 387
+
Sbjct: 65 L 65
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 25 DTVGGVRVPSAFCGILGFRPSYGAVSHMGI 54
D G +R PSAFCGI G +P+ +S G+
Sbjct: 245 DIGGSIRFPSAFCGICGLKPTGNRLSKSGL 274
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 25 DTVGGVRVPSAFCGILGFRPSYGAVSHMGI 54
D G +R PSAFCGI G +P+ +S G+
Sbjct: 208 DIGGSIRFPSAFCGICGLKPTGNRLSKSGL 237
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 25 DTVGGVRVPSAFCGILGFRPSYGAVSHMGI 54
D G +R PSAFCGI G +P+ +S G+
Sbjct: 201 DIGGSIRFPSAFCGICGLKPTGNRLSKSGL 230
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 25 DTVGGVRVPSAFCGILGFRPSYGAVSHMGI 54
D G +R PSAFCGI G +P+ +S G+
Sbjct: 207 DIGGSIRFPSAFCGICGLKPTGNRLSKSGL 236
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 365 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424
N AY + G + +A KA+ LD ++ +A+ G A G Y EAIE + AL L+
Sbjct: 8 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 67
Query: 425 P 425
P
Sbjct: 68 P 68
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384
SAE GN YK + +AI +Y +A++L+ +A + N AY + G + +A
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 385 KAINLDKKN 393
KA+ LD ++
Sbjct: 62 KALELDPRS 70
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 25 DTVGGVRVPSAFCGILGFRPSYGAVSHMGI 54
D G +R PSAFCGI G +P+ +S G+
Sbjct: 231 DIGGSIRFPSAFCGICGLKPTGNRLSKSGL 260
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 25 DTVGGVRVPSAFCGILGFRPSYGAVSHMGI 54
D G +R PSAFCGI G +P+ +S G+
Sbjct: 245 DIGGSIRFPSAFCGICGLKPTGNRLSKSGL 274
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 25 DTVGGVRVPSAFCGILGFRPSYGAVSHMGI 54
D G +R PSAFCGI G +P+ +S G+
Sbjct: 227 DIGGSIRFPSAFCGICGLKPTGNRLSKSGL 256
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 35.0 bits (79), Expect = 0.094, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 383 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
C+ +N NVKAY +RG A + +EA DF+ L L+P
Sbjct: 83 CSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 125
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 383 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426
C+ +N NVKAY +RG A + +EA DF+ L L+P
Sbjct: 89 CSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPA 132
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%)
Query: 341 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400
Q A+S + A+ + +N Y RA +L G A D TK I L A L+R
Sbjct: 41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQR 100
Query: 401 GTAREMLGYYKEAIEDFSYALVLEPT 426
G G EA +DF L P+
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPS 126
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%)
Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
GN + + + +A++ Y A+ L+ N+A + N A Y E G A +AI L
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
AY A + G EA + ++ AL L PT+
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%)
Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403
+A + Y +AI+ N A +SN + G A KA+ LD + AY+ G
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV 212
Query: 404 REMLGYYKEAIEDFSYALVLEPTN 427
+ + A+ + AL L P +
Sbjct: 213 LKEARIFDRAVAAYLRALSLSPNH 236
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 345 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC-TKAINL-----DKKNVKAYL 398
AI Y AI+L + Y N A A E GS +AE DC A+ L D N A +
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE-DCYNTALRLCPTHADSLNNLANI 314
Query: 399 RR--GTAREMLGYYKEAIEDF 417
+R G E + Y++A+E F
Sbjct: 315 KREQGNIEEAVRLYRKALEVF 335
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 41/100 (41%)
Query: 341 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400
Q A+S + A+ + +N Y RA +L G A D TK I L A L+R
Sbjct: 18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXDFTAARLQR 77
Query: 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
G G EA +DF L P+ + + +L K
Sbjct: 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%)
Query: 341 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400
Q A+S + A+ + +N Y RA +L G A D TK I L A L+R
Sbjct: 41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100
Query: 401 GTAREMLGYYKEAIEDFSYALVLEPT 426
G G EA +DF L P+
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPS 126
>pdb|3P88|A Chain A, Fxr Bound To Isoquinolinecarboxylic Acid
Length = 229
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 24/83 (28%)
Query: 86 FAAQRSPRQI--------IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENL--- 134
+ QR P++I A++ FE+L A VQV+++ T+KL G Q L HE+
Sbjct: 17 YNKQRMPQEITNKILKEEFSAEENFEILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIAL 76
Query: 135 -------------GEYFDSKVPS 144
E F+ K+PS
Sbjct: 77 LKGSAVEAMFLRSAEIFNKKLPS 99
>pdb|2Y9Y|B Chain B, Chromatin Remodeling Factor Isw1a(Del_atpase)
Length = 624
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 144 SLKGFHKTNGELKNVMRLIQ-RYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIE 202
+++G T + K + LIQ RYE ++ +++ +K PD+S ++ + EI +
Sbjct: 308 TIEGVDNTINQFKKLCSLIQSRYEIRSKKKHFVKQLKEGKKPDLSRKLEILKEIKAELKN 367
Query: 203 NCKSIRNEM 211
KS ++E+
Sbjct: 368 AVKSEKDEL 376
>pdb|2Y9Z|B Chain B, Chromatin Remodeling Factor Isw1a(Del_atpase) In Dna
Complex
Length = 624
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 144 SLKGFHKTNGELKNVMRLIQ-RYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIE 202
+++G T + K + LIQ RYE ++ +++ +K PD+S ++ + EI +
Sbjct: 308 TIEGVDNTINQFKKLCSLIQSRYEIRSKKKHFVKQLKEGKKPDLSRKLEILKEIKAELKN 367
Query: 203 NCKSIRNEM 211
KS ++E+
Sbjct: 368 AVKSEKDEL 376
>pdb|2XCB|A Chain A, Crystal Structure Of Pcrh In Complex With The Chaperone
Binding Region Of Popd
pdb|2XCB|B Chain B, Crystal Structure Of Pcrh In Complex With The Chaperone
Binding Region Of Popd
pdb|2XCC|A Chain A, Crystal Structure Of Pcrh From Pseudomonas Aeruginosa
pdb|2XCC|B Chain B, Crystal Structure Of Pcrh From Pseudomonas Aeruginosa
Length = 142
Score = 31.6 bits (70), Expect = 0.91, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 389 LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA 434
LD + + +L G R+ LG Y++A++ +SY +++ R A
Sbjct: 47 LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 7/136 (5%)
Query: 294 DTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLK---AISFYT 350
D++ N+ +EQ +I +L + E A N A +Q K A+ Y
Sbjct: 10 DSLNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 351 EAIKLNGNNATYYSNRAAAYLESGSFLQAEADC-TKAINLDKKNVKAYLRRGTAREMLGY 409
EAI+++ A YSN L+ +Q C T+AI ++ A+ + + G
Sbjct: 68 EAIRISPTFADAYSNMGNT-LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126
Query: 410 YKEAIEDFSYALVLEP 425
EAI + AL L+P
Sbjct: 127 IPEAIASYRTALKLKP 142
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 345 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404
A+ YT AI++N A +SN A+ + +SG+ +A A A+ L AY
Sbjct: 96 ALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155
Query: 405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439
+++ + + E K S+ AD+L K
Sbjct: 156 QIVCDWTDYDERMK---------KLVSIVADQLEK 181
>pdb|1EL0|A Chain A, Solution Structure Of The Human Cc Chemokine, I-309
Length = 74
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 38 GILGFRPSYGAVSHMGII------PISTSLDTVGWFARDPKILRH 76
IL +R + S+ G+I + +LDTVGW R K+LRH
Sbjct: 24 AILCYRNTSSICSNEGLIFKLKRGKEACALDTVGWVQRHRKMLRH 68
>pdb|2VGX|B Chain B, Structure Of The Yersinia Enterocolitica Type Iii
Secretion Translocator Chaperone Sycd
Length = 148
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 372 ESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429
+SG + A LD + + +L G R+ +G Y AI +SY V++ R
Sbjct: 33 QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90
>pdb|2VGX|A Chain A, Structure Of The Yersinia Enterocolitica Type Iii
Secretion Translocator Chaperone Sycd
Length = 148
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 372 ESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429
+SG + A LD + + +L G R+ +G Y AI +SY V++ R
Sbjct: 33 QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 355 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 414
++ N YY Y ++G++ ++ KAI LD + K +L +G A L Y+EA+
Sbjct: 2 VDQNPEEYYLEGVLQY-DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 415 EDFSYAL--VLEPTNKRA-SLSADRLRKV 440
+ ++Y + + + NK + AD LR +
Sbjct: 61 DCYNYVINVIEDEYNKDVWAAKADALRYI 89
>pdb|1HH8|A Chain A, The Active N-Terminal Region Of P67phox: Structure At 1.8
Angstrom Resolution And Biochemical Characterizations Of
The A128v Mutant Implicated In Chronic Granulomatous
Disease
Length = 213
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 378 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 422
+AE T++IN DK AY +RG Y AI+D AL+
Sbjct: 55 EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI 99
>pdb|3HC6|A Chain A, Fxr With Src1 And Gsk088
Length = 232
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 86 FAAQRSPRQI--------IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHEN 133
+ QR P++I A++ F +L A VQV+++ T+KL G Q L HE+
Sbjct: 20 YNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHED 75
>pdb|1WM5|A Chain A, Crystal Structure Of The N-Terminal Tpr Domain (1-203) Of
P67phox
Length = 208
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 378 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 422
+AE T++IN DK AY +RG Y AI+D AL+
Sbjct: 60 EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI 104
>pdb|3GD2|A Chain A, Isoxazole Ligand Bound To Farnesoid X Receptor (Fxr)
Length = 229
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 86 FAAQRSPRQI--------IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHEN 133
+ QR P++I A++ F +L A VQV+++ T+KL G Q L HE+
Sbjct: 17 YNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHED 72
>pdb|1E96|B Chain B, Structure Of The RacP67PHOX COMPLEX
Length = 203
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 378 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 422
+AE T++IN DK AY +RG Y AI+D AL+
Sbjct: 55 EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI 99
>pdb|2W11|A Chain A, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
Tokodaii
pdb|2W11|B Chain B, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
Tokodaii
Length = 206
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 293 LDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEA 352
L T+ Y +E I + L K E+ K K +AY+D ++LK IS E
Sbjct: 37 LLTIMGKYVEFEEITKITLRYILKVRGEESKFDEELNKWKNLKAYEDTKYLKEISEIAEV 96
Query: 353 IKLNGNNATYYSNRAAAYLESGSFLQ 378
L+ + N +LE L+
Sbjct: 97 YALSNGSI----NEVKQHLERNGLLR 118
>pdb|3P89|A Chain A, Fxr Bound To A Quinolinecarboxylic Acid
Length = 229
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 24/83 (28%)
Query: 86 FAAQRSPRQI--------IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENL--- 134
+ QR P++I A++ F +L A VQV+++ T+KL G Q L HE+
Sbjct: 17 YNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIAL 76
Query: 135 -------------GEYFDSKVPS 144
E F+ K+PS
Sbjct: 77 LKGSAVEAMFLRSAEIFNKKLPS 99
>pdb|3FXV|A Chain A, Identification Of An N-Oxide Pyridine Gw4064 Analogue As A
Potent Fxr Agonist
pdb|3OKH|A Chain A, Crystal Structure Of Human Fxr In Complex With
2-(4-Chlorophenyl)-1-
[(1s)-1-Cyclohexyl-2-(Cyclohexylamino)-2-Oxoethyl]-1h-
Benzimidazole- 6-Carboxylic Acid
pdb|3OKI|A Chain A, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-1h-Benzimidazol-1-Yl]-N,
2-Dicyclohexylethanamide
pdb|3OKI|C Chain C, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-1h-Benzimidazol-1-Yl]-N,
2-Dicyclohexylethanamide
pdb|3OLF|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Methylbenzoic Acid
pdb|3OLF|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Methylbenzoic Acid
pdb|3OMK|A Chain A, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-5,
6-Difluoro-1h-Benzimidazol-1-Yl]-2-Cyclohexyl-N-(2-
Methylphenyl)ethanamide
pdb|3OMK|C Chain C, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-5,
6-Difluoro-1h-Benzimidazol-1-Yl]-2-Cyclohexyl-N-(2-
Methylphenyl)ethanamide
pdb|3OMM|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Fluorobenzoic Acid
pdb|3OMM|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Fluorobenzoic Acid
pdb|3OOF|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)benzoic Acid
pdb|3OOF|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)benzoic Acid
pdb|3OOK|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3,5-Difluorobenzoic Acid
pdb|3OOK|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3,5-Difluorobenzoic Acid
Length = 233
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 24/83 (28%)
Query: 86 FAAQRSPRQI--------IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENL--- 134
+ QR P++I A++ F +L A VQV+++ T+KL G Q L HE+
Sbjct: 21 YNKQRMPQEITNKILKEAFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIAL 80
Query: 135 -------------GEYFDSKVPS 144
E F+ K+PS
Sbjct: 81 LKGSAVEAMFLRSAEIFNKKLPS 103
>pdb|3L1B|A Chain A, Complex Structure Of Fxr Ligand-Binding Domain With A
Tetrahydroazepinoindole Compound
Length = 233
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 86 FAAQRSPRQI--------IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHEN 133
+ QR P++I A++ F +L A VQV+++ T+KL G Q L HE+
Sbjct: 21 YNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHED 76
>pdb|3HC5|A Chain A, Fxr With Src1 And Gsk826
pdb|3RVF|A Chain A, Fxr With Src1 And Gsk2034
Length = 232
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 24/83 (28%)
Query: 86 FAAQRSPRQI--------IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENL--- 134
+ QR P++I A++ F +L A VQV+++ T+KL G Q L HE+
Sbjct: 20 YNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIAL 79
Query: 135 -------------GEYFDSKVPS 144
E F+ K+PS
Sbjct: 80 LKGSAVEAMFLRSAEIFNKKLPS 102
>pdb|3FLI|A Chain A, Discovery Of Xl335, A Highly Potent, Selective And Orally-
Active Agonist Of The Farnesoid X Receptor (Fxr)
Length = 231
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 24/83 (28%)
Query: 86 FAAQRSPRQI--------IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENL--- 134
+ QR P++I A++ F +L A VQV+++ T+KL G Q L HE+
Sbjct: 19 YNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIAL 78
Query: 135 -------------GEYFDSKVPS 144
E F+ K+PS
Sbjct: 79 LKGSAVEAMFLRSAEIFNKKLPS 101
>pdb|1OSH|A Chain A, A Chemical, Genetic, And Structural Analysis Of The
Nuclear Bile Acid Receptor Fxr
Length = 232
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 24/83 (28%)
Query: 86 FAAQRSPRQI--------IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENL--- 134
+ QR P++I A++ F +L A VQV+++ T+KL G Q L HE+
Sbjct: 20 YNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIAL 79
Query: 135 -------------GEYFDSKVPS 144
E F+ K+PS
Sbjct: 80 LKGSAVEAMFLRSAEIFNKKLPS 102
>pdb|3DCT|A Chain A, Fxr With Src1 And Gw4064
pdb|3DCU|A Chain A, Fxr With Src1 And Gsk8062
Length = 235
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 24/83 (28%)
Query: 86 FAAQRSPRQI--------IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENL--- 134
+ QR P++I A++ F +L A VQV+++ T+KL G Q L HE+
Sbjct: 23 YNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIAL 82
Query: 135 -------------GEYFDSKVPS 144
E F+ K+PS
Sbjct: 83 LKGSAVEAMFLRSAEIFNKKLPS 105
>pdb|3RUT|A Chain A, Fxr With Src1 And Gsk359
pdb|3RUU|A Chain A, Fxr With Src1 And Gsk237
Length = 229
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 24/83 (28%)
Query: 86 FAAQRSPRQI--------IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENL--- 134
+ QR P++I A++ F +L A VQV+++ T+KL G Q L HE+
Sbjct: 17 YNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIAL 76
Query: 135 -------------GEYFDSKVPS 144
E F+ K+PS
Sbjct: 77 LKGSAVEAMFLRSAEIFNKKLPS 99
>pdb|3BEJ|A Chain A, Structure Of Human Fxr In Complex With Mfa-1 And Co-
Activator Peptide
pdb|3BEJ|B Chain B, Structure Of Human Fxr In Complex With Mfa-1 And Co-
Activator Peptide
Length = 238
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 24/83 (28%)
Query: 86 FAAQRSPRQI--------IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENL--- 134
+ QR P++I A++ F +L A VQV+++ T+KL G Q L HE+
Sbjct: 26 YNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIAL 85
Query: 135 -------------GEYFDSKVPS 144
E F+ K+PS
Sbjct: 86 LKGSAVEAMFLRSAEIFNKKLPS 108
>pdb|2E2E|A Chain A, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
pdb|2E2E|B Chain B, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
Length = 177
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 349 YTEAIKLNGNNATYYSNRAAA-YLESGSFL--QAEADCTKAINLDKKNVKAYLRRGTARE 405
Y +A++L G NA Y+ A Y ++ + Q A KA+ LD + A + +
Sbjct: 67 YRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF 126
Query: 406 MLGYYKEAIE 415
M Y +AIE
Sbjct: 127 MQANYAQAIE 136
>pdb|2W43|A Chain A, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
pdb|2W43|B Chain B, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
Length = 201
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 293 LDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEA 352
L T+ Y +E I + L K E+ K K +AY+D ++LK IS E
Sbjct: 32 LLTIMGKYVEFEEITKITLRYILKVRGEESKFDEELNKWKNLKAYEDTKYLKEISEIAEV 91
Query: 353 IKLNGNNATYYSNRAAAYLESGSFLQ 378
L+ + N +LE L+
Sbjct: 92 YALSNGSI----NEVKQHLERNGLLR 113
>pdb|4AM9|A Chain A, Crystal Structure Of The Yersinia Enterocolitica Type Iii
Secretion Chaperone Sycd In Complex With A Peptide Of
The Translocator Yopd
Length = 148
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 372 ESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429
+SG + A LD + + +L G R+ +G Y AI +SY V++ R
Sbjct: 33 QSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIKEPR 90
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%)
Query: 342 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401
+ KA +T+AI+ N +A Y N A +A A KA+ LD AY G
Sbjct: 39 YEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98
Query: 402 TAREMLGYYKEAIEDFSYAL 421
+ YKEA + F AL
Sbjct: 99 NVYVVKEMYKEAKDMFEKAL 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,209,091
Number of Sequences: 62578
Number of extensions: 491077
Number of successful extensions: 1477
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1289
Number of HSP's gapped (non-prelim): 172
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)