Query 013459
Match_columns 442
No_of_seqs 344 out of 2885
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 04:04:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02722 indole-3-acetamide am 100.0 9.8E-59 2.1E-63 435.0 28.2 301 1-301 108-420 (422)
2 PRK08310 amidase; Provisional 100.0 1.9E-56 4E-61 418.8 28.3 285 1-302 107-393 (395)
3 COG0154 GatA Asp-tRNAAsn/Glu-t 100.0 1.1E-56 2.3E-61 424.4 26.2 289 1-304 153-468 (475)
4 PRK07056 amidase; Provisional 100.0 1.7E-55 3.7E-60 419.8 28.3 287 1-303 156-451 (454)
5 TIGR02715 amido_AtzE amidohydr 100.0 1.3E-55 2.7E-60 420.9 27.5 282 1-302 145-447 (452)
6 PRK09201 amidase; Provisional 100.0 1.5E-55 3.3E-60 421.4 27.7 282 1-302 152-454 (465)
7 PRK06102 hypothetical protein; 100.0 2E-55 4.4E-60 419.0 28.1 288 1-303 152-449 (452)
8 PRK07235 amidase; Provisional 100.0 2.4E-55 5.2E-60 421.2 27.3 285 1-302 167-500 (502)
9 PRK05962 amidase; Validated 100.0 4.2E-55 9.1E-60 413.5 28.5 288 1-304 126-422 (424)
10 PRK06169 putative amidase; Pro 100.0 4.2E-54 9E-59 412.1 27.8 282 1-302 152-455 (466)
11 PRK07488 indole acetimide hydr 100.0 1.1E-53 2.4E-58 409.8 29.1 284 1-302 153-464 (472)
12 PRK07487 amidase; Provisional 100.0 1.4E-53 3.1E-58 408.2 28.2 286 1-303 152-457 (469)
13 TIGR02713 allophanate_hyd allo 100.0 1.4E-53 3E-58 410.6 26.9 286 1-303 110-411 (561)
14 PRK07486 amidase; Provisional 100.0 1.9E-53 4.1E-58 409.5 27.3 286 1-302 157-470 (484)
15 PRK08186 allophanate hydrolase 100.0 1.8E-53 4E-58 414.2 27.4 285 1-303 147-448 (600)
16 TIGR00132 gatA glutamyl-tRNA(G 100.0 1.7E-53 3.6E-58 408.2 25.4 280 1-301 135-459 (460)
17 PRK00012 gatA aspartyl/glutamy 100.0 1.6E-53 3.5E-58 408.2 24.9 281 1-300 135-459 (459)
18 PRK06061 amidase; Provisional 100.0 4.5E-53 9.9E-58 405.7 27.1 282 1-302 160-467 (483)
19 PRK06170 amidase; Provisional 100.0 7.4E-53 1.6E-57 406.5 27.4 286 1-302 155-481 (490)
20 PRK12470 amidase; Provisional 100.0 7.8E-53 1.7E-57 401.9 26.4 284 1-302 151-451 (462)
21 PRK07139 amidase; Provisional 100.0 9.5E-53 2E-57 398.2 26.5 282 1-304 116-434 (439)
22 PRK07042 amidase; Provisional 100.0 1.1E-52 2.4E-57 402.1 26.5 282 1-303 151-452 (464)
23 PRK08137 amidase; Provisional 100.0 2.7E-52 5.9E-57 402.8 26.8 276 1-302 158-482 (497)
24 PRK06529 amidase; Provisional 100.0 7.5E-52 1.6E-56 398.2 27.4 286 1-302 143-477 (482)
25 PRK07869 amidase; Provisional 100.0 1.7E-50 3.6E-55 387.9 25.8 284 1-302 153-461 (468)
26 PF01425 Amidase: Amidase; In 100.0 4E-51 8.6E-56 396.3 15.8 277 1-293 127-441 (441)
27 PRK06828 amidase; Provisional 100.0 2.1E-49 4.5E-54 378.1 26.1 262 1-302 168-481 (491)
28 PRK11910 amidase; Provisional 100.0 9.6E-48 2.1E-52 366.6 24.7 261 1-304 314-607 (615)
29 PRK06707 amidase; Provisional 100.0 5.3E-47 1.1E-51 363.2 25.1 258 1-303 223-528 (536)
30 PRK06565 amidase; Validated 100.0 5.9E-45 1.3E-49 345.1 19.5 299 1-304 158-555 (566)
31 KOG1211 Amidases [Translation, 100.0 1.2E-43 2.7E-48 325.6 15.6 291 1-301 162-493 (506)
32 KOG1212 Amidases [Translation, 100.0 2.3E-38 4.9E-43 293.8 21.6 281 1-304 199-552 (560)
33 KOG0553 TPR repeat-containing 99.8 4.4E-18 9.5E-23 145.2 14.3 121 321-441 76-196 (304)
34 PRK15359 type III secretion sy 99.7 5.6E-16 1.2E-20 124.5 15.7 112 329-440 27-138 (144)
35 PRK15363 pathogenicity island 99.7 8.6E-15 1.9E-19 115.0 15.6 109 323-431 32-140 (157)
36 TIGR02552 LcrH_SycD type III s 99.6 1.9E-14 4E-19 115.3 15.7 121 321-441 12-132 (135)
37 PLN03088 SGT1, suppressor of 99.6 3.1E-14 6.8E-19 132.1 16.2 114 328-441 4-117 (356)
38 KOG0548 Molecular co-chaperone 99.6 1E-13 2.2E-18 127.1 17.3 118 323-440 355-472 (539)
39 PRK10370 formate-dependent nit 99.6 8.3E-14 1.8E-18 118.0 14.6 120 319-438 66-188 (198)
40 KOG4626 O-linked N-acetylgluco 99.5 2.2E-13 4.7E-18 126.6 14.3 122 320-441 382-503 (966)
41 KOG0543 FKBP-type peptidyl-pro 99.5 3.2E-13 7E-18 120.5 14.6 118 324-441 206-338 (397)
42 KOG4626 O-linked N-acetylgluco 99.5 1.1E-13 2.3E-18 128.6 11.0 117 323-439 283-399 (966)
43 PRK11189 lipoprotein NlpI; Pro 99.5 9.6E-13 2.1E-17 119.6 16.6 107 323-429 61-167 (296)
44 TIGR02795 tol_pal_ybgF tol-pal 99.4 5.2E-12 1.1E-16 98.6 13.9 110 326-435 2-117 (119)
45 KOG1126 DNA-binding cell divis 99.4 3.1E-13 6.8E-18 126.9 7.5 120 319-438 414-533 (638)
46 TIGR00990 3a0801s09 mitochondr 99.4 6.5E-12 1.4E-16 126.5 17.0 117 322-438 361-477 (615)
47 COG3063 PilF Tfp pilus assembl 99.4 5.3E-12 1.1E-16 104.0 12.9 123 316-438 59-183 (250)
48 KOG1155 Anaphase-promoting com 99.4 1.4E-11 3.1E-16 111.0 15.1 119 323-441 361-479 (559)
49 PRK15331 chaperone protein Sic 99.4 2.9E-11 6.4E-16 95.6 14.9 115 323-438 34-148 (165)
50 KOG4648 Uncharacterized conser 99.4 3.6E-12 7.8E-17 110.6 10.4 112 329-440 100-211 (536)
51 TIGR00990 3a0801s09 mitochondr 99.4 1.5E-11 3.1E-16 124.0 16.5 117 322-438 327-443 (615)
52 KOG4234 TPR repeat-containing 99.4 1.7E-11 3.7E-16 98.5 12.8 118 323-440 92-214 (271)
53 PRK15179 Vi polysaccharide bio 99.4 2.1E-11 4.5E-16 121.3 16.5 122 319-440 79-200 (694)
54 PRK09782 bacteriophage N4 rece 99.3 1.8E-11 4E-16 126.4 15.6 116 323-439 607-722 (987)
55 COG3063 PilF Tfp pilus assembl 99.3 3.3E-11 7.2E-16 99.4 13.8 115 323-437 32-148 (250)
56 PLN02789 farnesyltranstransfer 99.3 4.4E-11 9.5E-16 108.6 15.0 120 319-438 64-186 (320)
57 PRK12370 invasion protein regu 99.3 3.5E-11 7.6E-16 119.1 15.7 117 322-438 334-451 (553)
58 COG5010 TadD Flp pilus assembl 99.3 5.5E-11 1.2E-15 100.2 14.2 120 319-438 93-212 (257)
59 PRK12370 invasion protein regu 99.3 5.9E-11 1.3E-15 117.6 16.6 115 319-433 288-411 (553)
60 PRK11189 lipoprotein NlpI; Pro 99.3 9.2E-11 2E-15 106.6 16.3 118 321-438 93-281 (296)
61 PRK10803 tol-pal system protei 99.3 9.5E-11 2.1E-15 103.1 15.7 114 326-439 142-262 (263)
62 PRK02603 photosystem I assembl 99.3 7.9E-11 1.7E-15 98.1 14.6 111 318-428 27-154 (172)
63 PF13414 TPR_11: TPR repeat; P 99.3 1.2E-11 2.5E-16 86.0 7.9 66 326-391 3-69 (69)
64 KOG1126 DNA-binding cell divis 99.3 3.5E-11 7.7E-16 113.3 13.2 121 321-441 484-604 (638)
65 PF13414 TPR_11: TPR repeat; P 99.3 1.5E-11 3.4E-16 85.4 8.4 68 358-425 1-69 (69)
66 cd00189 TPR Tetratricopeptide 99.3 6E-11 1.3E-15 88.1 12.2 99 328-426 2-100 (100)
67 PF13429 TPR_15: Tetratricopep 99.3 1.8E-11 3.9E-16 110.9 10.9 118 322-439 142-259 (280)
68 KOG1155 Anaphase-promoting com 99.3 3.5E-11 7.6E-16 108.6 12.4 117 325-441 329-445 (559)
69 KOG0624 dsRNA-activated protei 99.3 4.7E-11 1E-15 103.8 11.8 115 320-434 32-146 (504)
70 KOG1125 TPR repeat-containing 99.3 1.8E-11 3.9E-16 113.5 9.8 103 324-426 428-530 (579)
71 PRK15179 Vi polysaccharide bio 99.3 4.9E-11 1.1E-15 118.7 13.2 119 321-439 115-234 (694)
72 PF12895 Apc3: Anaphase-promot 99.3 1.8E-11 3.9E-16 88.6 7.6 82 338-420 1-84 (84)
73 PRK15359 type III secretion sy 99.3 6.8E-11 1.5E-15 95.0 10.9 92 346-440 13-104 (144)
74 PRK10370 formate-dependent nit 99.2 1.6E-10 3.6E-15 97.9 13.8 100 339-438 52-154 (198)
75 TIGR03302 OM_YfiO outer membra 99.2 1.8E-10 3.9E-15 101.6 14.0 116 320-435 27-156 (235)
76 KOG0548 Molecular co-chaperone 99.2 8.5E-11 1.8E-15 108.2 11.8 112 327-438 3-114 (539)
77 COG4235 Cytochrome c biogenesi 99.2 2.8E-10 6E-15 98.6 14.1 118 320-437 150-270 (287)
78 KOG0547 Translocase of outer m 99.2 1.1E-10 2.3E-15 106.2 11.8 104 323-426 391-494 (606)
79 TIGR02521 type_IV_pilW type IV 99.2 4.5E-10 9.8E-15 98.5 15.6 115 323-437 62-178 (234)
80 PRK09782 bacteriophage N4 rece 99.2 2.9E-10 6.3E-15 117.7 16.2 116 324-440 574-689 (987)
81 KOG0550 Molecular chaperone (D 99.2 1.4E-10 3E-15 103.3 11.7 119 318-437 241-363 (486)
82 KOG0547 Translocase of outer m 99.2 1.6E-10 3.5E-15 105.0 11.9 116 323-438 357-472 (606)
83 CHL00033 ycf3 photosystem I as 99.2 5E-10 1.1E-14 93.0 14.2 107 323-429 32-155 (168)
84 TIGR02521 type_IV_pilW type IV 99.2 6.8E-10 1.5E-14 97.4 16.0 116 322-437 27-144 (234)
85 PF13432 TPR_16: Tetratricopep 99.2 9.4E-11 2E-15 80.3 8.0 63 365-427 2-64 (65)
86 PRK15174 Vi polysaccharide exp 99.2 4.5E-10 9.6E-15 113.3 15.5 107 323-429 243-353 (656)
87 PF13432 TPR_16: Tetratricopep 99.2 1.4E-10 3E-15 79.5 8.1 65 330-394 1-65 (65)
88 COG1729 Uncharacterized protei 99.2 1.4E-09 3E-14 93.2 14.6 111 329-439 144-260 (262)
89 TIGR03302 OM_YfiO outer membra 99.1 2.4E-09 5.3E-14 94.4 16.2 117 323-439 67-214 (235)
90 PRK15174 Vi polysaccharide exp 99.1 9.1E-10 2E-14 111.0 14.8 116 319-434 69-184 (656)
91 TIGR02552 LcrH_SycD type III s 99.1 9.8E-10 2.1E-14 87.8 11.5 93 347-439 4-96 (135)
92 PLN02789 farnesyltranstransfer 99.1 2.8E-09 6.1E-14 96.8 15.5 120 320-439 100-228 (320)
93 KOG0553 TPR repeat-containing 99.1 8.2E-10 1.8E-14 95.0 11.2 89 323-411 112-200 (304)
94 PRK10049 pgaA outer membrane p 99.1 1.9E-09 4.1E-14 111.0 16.0 115 323-438 46-160 (765)
95 PF13512 TPR_18: Tetratricopep 99.1 3.7E-09 8E-14 82.0 13.2 111 325-435 9-140 (142)
96 PRK11447 cellulose synthase su 99.1 1.6E-09 3.4E-14 116.7 15.3 118 321-438 298-429 (1157)
97 KOG4642 Chaperone-dependent E3 99.1 8.6E-10 1.9E-14 91.3 10.1 115 324-438 8-127 (284)
98 COG5010 TadD Flp pilus assembl 99.1 2.3E-09 4.9E-14 90.6 12.8 117 321-438 62-178 (257)
99 KOG4162 Predicted calmodulin-b 99.1 1.3E-09 2.9E-14 104.4 12.5 108 322-429 680-789 (799)
100 COG4783 Putative Zn-dependent 99.1 4.2E-09 9.2E-14 96.4 14.9 123 318-440 332-454 (484)
101 COG4783 Putative Zn-dependent 99.1 4.4E-09 9.6E-14 96.3 14.6 118 323-440 303-420 (484)
102 PRK15363 pathogenicity island 99.1 2.1E-09 4.6E-14 84.8 10.9 88 352-439 26-114 (157)
103 KOG2076 RNA polymerase III tra 99.0 6E-09 1.3E-13 101.6 15.8 108 318-425 165-272 (895)
104 KOG0624 dsRNA-activated protei 99.0 7.7E-09 1.7E-13 90.3 14.6 114 327-440 156-269 (504)
105 KOG3060 Uncharacterized conser 99.0 7.7E-09 1.7E-13 86.7 13.3 151 287-439 83-236 (289)
106 KOG3060 Uncharacterized conser 99.0 2.6E-08 5.6E-13 83.6 16.1 117 323-439 83-199 (289)
107 PF14559 TPR_19: Tetratricopep 99.0 1.7E-09 3.6E-14 74.8 7.7 65 337-401 2-66 (68)
108 PRK11447 cellulose synthase su 99.0 6.8E-09 1.5E-13 111.9 16.0 115 322-436 381-537 (1157)
109 PF13371 TPR_9: Tetratricopept 99.0 2.7E-09 5.9E-14 74.9 8.2 69 368-436 3-71 (73)
110 PRK10049 pgaA outer membrane p 99.0 1.3E-08 2.8E-13 104.9 16.2 113 325-437 358-470 (765)
111 KOG1129 TPR repeat-containing 99.0 1.5E-09 3.3E-14 94.0 7.4 117 323-439 321-440 (478)
112 PRK11788 tetratricopeptide rep 99.0 4.4E-08 9.6E-13 93.4 18.5 110 323-433 211-321 (389)
113 PF14559 TPR_19: Tetratricopep 99.0 2E-09 4.4E-14 74.4 6.8 68 370-437 1-68 (68)
114 KOG0376 Serine-threonine phosp 99.0 1.1E-09 2.3E-14 100.2 6.8 116 326-441 4-119 (476)
115 TIGR02917 PEP_TPR_lipo putativ 99.0 9.8E-09 2.1E-13 108.7 15.3 117 321-438 765-881 (899)
116 KOG1125 TPR repeat-containing 99.0 4.9E-09 1.1E-13 97.6 10.7 76 360-435 430-505 (579)
117 KOG2002 TPR-containing nuclear 99.0 1.7E-08 3.7E-13 99.3 14.7 121 319-439 300-425 (1018)
118 TIGR02917 PEP_TPR_lipo putativ 98.9 3.6E-08 7.8E-13 104.4 18.2 110 324-433 123-232 (899)
119 KOG1173 Anaphase-promoting com 98.9 8.6E-09 1.9E-13 95.7 11.4 118 321-438 409-533 (611)
120 PRK11788 tetratricopeptide rep 98.9 2.9E-08 6.3E-13 94.7 15.7 116 322-437 137-258 (389)
121 PF12688 TPR_5: Tetratrico pep 98.9 3.6E-08 7.8E-13 75.4 12.7 96 327-422 2-103 (120)
122 PF13371 TPR_9: Tetratricopept 98.9 7.1E-09 1.5E-13 72.8 8.3 70 333-402 2-71 (73)
123 PF13525 YfiO: Outer membrane 98.9 4.7E-08 1E-12 83.6 14.5 113 324-436 3-132 (203)
124 KOG0543 FKBP-type peptidyl-pro 98.9 3E-08 6.4E-13 89.2 13.6 101 325-425 256-357 (397)
125 PRK10866 outer membrane biogen 98.9 6.6E-08 1.4E-12 84.7 15.4 114 324-437 30-167 (243)
126 KOG0551 Hsp90 co-chaperone CNS 98.9 1.5E-08 3.3E-13 88.1 11.0 108 323-430 78-189 (390)
127 COG2956 Predicted N-acetylgluc 98.9 1.3E-07 2.7E-12 82.3 16.5 114 316-429 170-284 (389)
128 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 2.1E-08 4.5E-13 92.3 12.2 72 319-390 68-142 (453)
129 PF06552 TOM20_plant: Plant sp 98.9 3.2E-08 7E-13 79.2 11.4 98 342-439 7-125 (186)
130 PLN03088 SGT1, suppressor of 98.9 1.5E-08 3.3E-13 94.3 11.2 88 321-408 31-118 (356)
131 PF09976 TPR_21: Tetratricopep 98.9 7.8E-08 1.7E-12 77.6 13.2 98 323-421 45-145 (145)
132 KOG4555 TPR repeat-containing 98.9 1.5E-07 3.3E-12 70.6 13.3 101 327-427 44-148 (175)
133 PF13429 TPR_15: Tetratricopep 98.9 8.9E-09 1.9E-13 93.3 8.5 105 319-423 173-277 (280)
134 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 2.2E-08 4.7E-13 92.2 9.8 69 355-423 70-141 (453)
135 KOG0545 Aryl-hydrocarbon recep 98.8 5.3E-08 1.2E-12 81.2 10.7 107 324-430 176-300 (329)
136 PRK14574 hmsH outer membrane p 98.8 9.1E-08 2E-12 97.5 14.6 111 320-430 62-172 (822)
137 KOG2076 RNA polymerase III tra 98.8 2E-07 4.4E-12 91.3 16.1 116 324-439 137-252 (895)
138 PRK11906 transcriptional regul 98.8 2.1E-07 4.5E-12 86.0 14.1 110 320-429 289-407 (458)
139 KOG1128 Uncharacterized conser 98.8 5.4E-08 1.2E-12 93.2 10.4 109 326-434 485-593 (777)
140 KOG2003 TPR repeat-containing 98.7 5.5E-08 1.2E-12 88.0 9.4 116 324-439 488-603 (840)
141 cd05804 StaR_like StaR_like; a 98.7 1.3E-07 2.9E-12 88.9 12.5 105 321-425 109-217 (355)
142 KOG1156 N-terminal acetyltrans 98.7 1.4E-07 3.1E-12 89.2 11.8 112 327-438 8-119 (700)
143 PRK14720 transcript cleavage f 98.7 1.9E-07 4.2E-12 94.3 13.3 117 321-439 26-161 (906)
144 KOG1173 Anaphase-promoting com 98.7 9E-08 2E-12 89.1 10.1 119 319-437 305-423 (611)
145 CHL00033 ycf3 photosystem I as 98.7 2E-07 4.2E-12 77.4 11.3 105 335-439 8-117 (168)
146 PRK14574 hmsH outer membrane p 98.7 3.2E-07 7E-12 93.5 14.8 115 323-438 99-213 (822)
147 KOG2002 TPR-containing nuclear 98.7 1.6E-07 3.4E-12 92.7 12.0 120 320-439 264-387 (1018)
148 KOG1129 TPR repeat-containing 98.7 1.3E-06 2.9E-11 76.2 15.6 101 328-429 225-325 (478)
149 KOG2003 TPR repeat-containing 98.7 9.8E-07 2.1E-11 80.1 14.7 135 301-437 569-703 (840)
150 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 3.5E-07 7.7E-12 84.9 12.0 97 327-423 201-297 (395)
151 COG4785 NlpI Lipoprotein NlpI, 98.6 2.9E-07 6.2E-12 75.5 9.8 108 322-429 61-168 (297)
152 PF13424 TPR_12: Tetratricopep 98.6 1.1E-07 2.3E-12 67.7 6.5 63 361-423 6-75 (78)
153 TIGR00540 hemY_coli hemY prote 98.6 5.8E-07 1.2E-11 86.0 13.3 114 324-438 261-380 (409)
154 PRK10153 DNA-binding transcrip 98.6 8.5E-07 1.8E-11 86.2 14.4 70 359-429 419-488 (517)
155 KOG4162 Predicted calmodulin-b 98.6 6.8E-07 1.5E-11 86.3 13.3 115 326-440 650-766 (799)
156 KOG0550 Molecular chaperone (D 98.6 3.2E-07 6.9E-12 82.3 10.3 117 323-439 200-332 (486)
157 KOG1840 Kinesin light chain [C 98.6 8.7E-07 1.9E-11 84.6 13.5 107 318-424 275-397 (508)
158 PF13424 TPR_12: Tetratricopep 98.6 8.5E-08 1.8E-12 68.2 5.2 69 322-390 1-76 (78)
159 PF13525 YfiO: Outer membrane 98.6 3E-06 6.5E-11 72.5 15.7 120 319-438 35-185 (203)
160 COG4235 Cytochrome c biogenesi 98.6 1.1E-06 2.3E-11 76.6 12.5 97 342-438 138-237 (287)
161 COG4700 Uncharacterized protei 98.6 2.7E-06 5.8E-11 68.3 13.5 104 325-428 88-194 (251)
162 COG2956 Predicted N-acetylgluc 98.6 3.9E-06 8.3E-11 73.3 15.6 116 323-438 138-259 (389)
163 KOG1174 Anaphase-promoting com 98.5 1.3E-06 2.7E-11 78.6 12.2 117 323-440 399-517 (564)
164 PRK02603 photosystem I assembl 98.5 8.3E-07 1.8E-11 73.9 10.4 81 358-438 33-116 (172)
165 cd00189 TPR Tetratricopeptide 98.5 1.1E-06 2.4E-11 64.6 10.0 77 362-438 2-78 (100)
166 KOG1840 Kinesin light chain [C 98.5 7.9E-07 1.7E-11 84.9 11.1 105 320-424 193-313 (508)
167 PRK11906 transcriptional regul 98.5 8.8E-06 1.9E-10 75.5 17.4 110 328-437 257-381 (458)
168 TIGR02795 tol_pal_ybgF tol-pal 98.5 1.6E-06 3.4E-11 67.3 10.7 75 323-397 36-113 (119)
169 PRK10747 putative protoheme IX 98.5 2.7E-06 5.7E-11 81.0 13.5 105 322-429 259-363 (398)
170 TIGR00540 hemY_coli hemY prote 98.5 7.2E-06 1.6E-10 78.5 16.4 107 323-429 115-222 (409)
171 PF12895 Apc3: Anaphase-promot 98.5 4.8E-07 1E-11 65.3 6.4 61 325-386 24-84 (84)
172 PRK10153 DNA-binding transcrip 98.5 1.2E-05 2.5E-10 78.4 17.4 113 325-438 338-463 (517)
173 cd05804 StaR_like StaR_like; a 98.4 4.1E-06 9E-11 78.8 14.0 103 327-429 44-183 (355)
174 KOG1174 Anaphase-promoting com 98.4 5.6E-06 1.2E-10 74.6 13.4 120 318-437 224-377 (564)
175 KOG0495 HAT repeat protein [RN 98.4 3.3E-06 7.2E-11 80.2 12.4 104 328-431 653-756 (913)
176 KOG3785 Uncharacterized conser 98.4 5.1E-06 1.1E-10 73.3 12.7 131 303-435 70-226 (557)
177 PF09976 TPR_21: Tetratricopep 98.4 1.6E-05 3.4E-10 64.1 14.9 114 324-438 9-128 (145)
178 KOG0495 HAT repeat protein [RN 98.4 7E-06 1.5E-10 78.1 14.1 120 320-440 612-731 (913)
179 PF04733 Coatomer_E: Coatomer 98.4 8.6E-06 1.9E-10 73.3 14.0 105 330-434 169-276 (290)
180 KOG1156 N-terminal acetyltrans 98.4 5.6E-06 1.2E-10 78.7 13.0 116 321-436 36-151 (700)
181 PRK10866 outer membrane biogen 98.4 3.2E-05 6.9E-10 67.9 17.1 116 322-437 65-218 (243)
182 PRK14720 transcript cleavage f 98.4 2.1E-06 4.5E-11 87.0 10.7 104 319-425 58-180 (906)
183 KOG1128 Uncharacterized conser 98.3 2E-06 4.4E-11 82.7 9.1 107 319-425 512-618 (777)
184 PRK15331 chaperone protein Sic 98.3 3.4E-06 7.4E-11 67.1 8.7 88 352-439 29-116 (165)
185 KOG1308 Hsp70-interacting prot 98.3 3.3E-07 7.1E-12 80.4 2.8 99 328-426 116-214 (377)
186 PF13428 TPR_14: Tetratricopep 98.3 1.7E-06 3.7E-11 53.5 5.3 40 396-435 3-42 (44)
187 PF13428 TPR_14: Tetratricopep 98.3 1.7E-06 3.6E-11 53.6 5.1 42 361-402 2-43 (44)
188 KOG4234 TPR repeat-containing 98.3 1.5E-05 3.3E-10 64.8 11.6 90 323-412 131-220 (271)
189 COG4105 ComL DNA uptake lipopr 98.3 3.5E-05 7.6E-10 65.9 14.4 113 324-436 32-158 (254)
190 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.2E-05 4.7E-10 73.2 14.3 103 334-439 177-279 (395)
191 PRK10747 putative protoheme IX 98.3 3.6E-05 7.8E-10 73.3 15.9 106 327-432 118-225 (398)
192 PF04733 Coatomer_E: Coatomer 98.2 1.6E-05 3.5E-10 71.6 12.3 116 324-439 129-246 (290)
193 PF12688 TPR_5: Tetratrico pep 98.2 2.3E-05 5E-10 60.0 10.9 77 361-437 2-84 (120)
194 PF06552 TOM20_plant: Plant sp 98.2 4.8E-05 1E-09 61.3 12.6 80 321-400 20-120 (186)
195 PF13431 TPR_17: Tetratricopep 98.2 1.8E-06 4E-11 49.7 3.0 32 383-414 2-33 (34)
196 KOG1127 TPR repeat-containing 98.2 9.5E-06 2.1E-10 80.7 9.7 110 327-436 563-672 (1238)
197 PRK10803 tol-pal system protei 98.2 3.3E-05 7.2E-10 68.3 12.2 73 324-396 178-253 (263)
198 PF12569 NARP1: NMDA receptor- 98.2 8.2E-05 1.8E-09 72.1 15.8 99 326-424 194-292 (517)
199 KOG1127 TPR repeat-containing 98.1 2.1E-05 4.5E-10 78.4 11.5 120 319-438 485-640 (1238)
200 PF13512 TPR_18: Tetratricopep 98.1 3.9E-05 8.4E-10 59.8 10.7 77 320-396 41-135 (142)
201 PF13431 TPR_17: Tetratricopep 98.1 2.7E-06 5.9E-11 49.0 3.1 34 348-381 1-34 (34)
202 PF00515 TPR_1: Tetratricopept 98.0 9.9E-06 2.2E-10 46.9 4.4 32 395-426 2-33 (34)
203 PF07719 TPR_2: Tetratricopept 98.0 1.4E-05 3.1E-10 46.2 5.0 33 395-427 2-34 (34)
204 PF14938 SNAP: Soluble NSF att 98.0 4.7E-05 1E-09 68.8 10.8 104 323-427 72-188 (282)
205 PF00515 TPR_1: Tetratricopept 98.0 1.4E-05 2.9E-10 46.3 4.5 32 361-392 2-33 (34)
206 PF14938 SNAP: Soluble NSF att 98.0 9.5E-05 2.1E-09 66.9 11.4 105 324-428 112-230 (282)
207 PF03704 BTAD: Bacterial trans 98.0 0.00044 9.5E-09 55.8 14.2 97 327-423 7-125 (146)
208 PF07719 TPR_2: Tetratricopept 97.9 3E-05 6.6E-10 44.8 4.8 31 362-392 3-33 (34)
209 COG3118 Thioredoxin domain-con 97.9 0.001 2.2E-08 58.1 15.3 98 327-424 135-266 (304)
210 PF14853 Fis1_TPR_C: Fis1 C-te 97.8 0.00011 2.4E-09 46.8 6.9 47 395-441 2-48 (53)
211 COG1729 Uncharacterized protei 97.8 0.00012 2.6E-09 63.2 9.4 75 363-437 144-224 (262)
212 KOG2376 Signal recognition par 97.8 0.00041 8.9E-09 65.7 13.3 90 330-422 83-203 (652)
213 KOG4340 Uncharacterized conser 97.8 0.00025 5.4E-09 61.6 10.9 118 318-435 36-185 (459)
214 KOG1310 WD40 repeat protein [G 97.8 9.6E-05 2.1E-09 68.8 8.9 111 320-430 368-481 (758)
215 KOG2796 Uncharacterized conser 97.8 0.00062 1.3E-08 58.1 12.6 100 327-426 178-318 (366)
216 PF12569 NARP1: NMDA receptor- 97.8 0.00044 9.5E-09 67.2 13.6 104 326-429 4-112 (517)
217 KOG3364 Membrane protein invol 97.8 0.00072 1.6E-08 51.5 11.5 83 359-441 31-118 (149)
218 PF05843 Suf: Suppressor of fo 97.8 0.00052 1.1E-08 61.8 12.9 111 324-434 33-147 (280)
219 KOG3785 Uncharacterized conser 97.8 0.0002 4.4E-09 63.5 9.7 54 332-385 63-116 (557)
220 KOG2376 Signal recognition par 97.8 0.00049 1.1E-08 65.2 12.7 106 323-432 43-148 (652)
221 KOG2471 TPR repeat-containing 97.7 0.00024 5.1E-09 65.8 9.6 114 324-437 238-378 (696)
222 KOG1130 Predicted G-alpha GTPa 97.7 0.00024 5.2E-09 64.3 9.1 100 324-423 233-344 (639)
223 COG3071 HemY Uncharacterized e 97.6 0.003 6.5E-08 57.3 15.4 98 326-426 263-360 (400)
224 KOG1130 Predicted G-alpha GTPa 97.6 0.00015 3.3E-09 65.6 7.2 104 321-424 190-305 (639)
225 COG4785 NlpI Lipoprotein NlpI, 97.6 0.00061 1.3E-08 56.5 10.0 79 317-395 90-168 (297)
226 COG3071 HemY Uncharacterized e 97.6 0.0014 3.1E-08 59.3 12.8 87 336-423 304-390 (400)
227 PF13181 TPR_8: Tetratricopept 97.6 0.00013 2.8E-09 42.1 4.2 32 395-426 2-33 (34)
228 KOG4648 Uncharacterized conser 97.6 0.00011 2.4E-09 64.8 5.6 73 363-435 100-172 (536)
229 KOG2796 Uncharacterized conser 97.6 0.0017 3.6E-08 55.6 12.2 119 287-405 209-334 (366)
230 KOG4340 Uncharacterized conser 97.6 0.0013 2.9E-08 57.2 11.8 86 335-420 19-104 (459)
231 COG4105 ComL DNA uptake lipopr 97.6 0.0066 1.4E-07 52.3 15.7 118 322-439 67-212 (254)
232 COG4700 Uncharacterized protei 97.5 0.004 8.6E-08 50.5 13.1 98 323-421 121-220 (251)
233 KOG3081 Vesicle coat complex C 97.5 0.01 2.3E-07 51.0 16.2 105 327-431 170-279 (299)
234 COG2976 Uncharacterized protei 97.5 0.0031 6.7E-08 51.6 12.3 100 327-427 90-192 (207)
235 PRK10941 hypothetical protein; 97.5 0.0014 2.9E-08 58.1 11.1 79 325-403 180-258 (269)
236 KOG1586 Protein required for f 97.5 0.0041 8.9E-08 52.3 12.7 110 324-433 71-193 (288)
237 PRK10941 hypothetical protein; 97.4 0.0036 7.8E-08 55.4 12.7 78 362-439 183-260 (269)
238 KOG3081 Vesicle coat complex C 97.4 0.0066 1.4E-07 52.2 13.5 111 326-438 137-251 (299)
239 KOG4555 TPR repeat-containing 97.4 0.0019 4.1E-08 49.0 8.9 67 363-429 46-112 (175)
240 PF10300 DUF3808: Protein of u 97.4 0.0016 3.5E-08 63.1 11.1 106 320-425 261-378 (468)
241 PF12968 DUF3856: Domain of Un 97.4 0.0063 1.4E-07 45.3 11.2 93 331-423 14-129 (144)
242 PF13181 TPR_8: Tetratricopept 97.4 0.00038 8.2E-09 40.0 4.1 30 362-391 3-32 (34)
243 PF09613 HrpB1_HrpK: Bacterial 97.4 0.027 5.9E-07 45.0 15.6 88 323-410 7-94 (160)
244 COG0457 NrfG FOG: TPR repeat [ 97.3 0.019 4.2E-07 49.5 17.0 97 335-431 139-239 (291)
245 KOG1915 Cell cycle control pro 97.3 0.0064 1.4E-07 56.5 13.6 107 323-429 70-176 (677)
246 KOG4507 Uncharacterized conser 97.3 0.00052 1.1E-08 64.9 6.8 105 334-438 615-720 (886)
247 PF04781 DUF627: Protein of un 97.3 0.0024 5.2E-08 47.2 8.9 93 332-424 2-108 (111)
248 KOG3824 Huntingtin interacting 97.3 0.0011 2.3E-08 57.9 8.1 80 324-403 114-193 (472)
249 PF13174 TPR_6: Tetratricopept 97.3 0.00046 9.9E-09 39.3 4.1 31 396-426 2-32 (33)
250 COG0457 NrfG FOG: TPR repeat [ 97.3 0.0091 2E-07 51.6 14.6 117 322-438 91-212 (291)
251 PF05843 Suf: Suppressor of fo 97.3 0.014 3.1E-07 52.6 15.6 101 328-428 3-104 (280)
252 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0049 1.1E-07 54.6 11.8 78 318-395 111-188 (390)
253 KOG2053 Mitochondrial inherita 97.3 0.0036 7.9E-08 62.4 12.0 111 319-430 36-146 (932)
254 KOG2610 Uncharacterized conser 97.2 0.0038 8.3E-08 55.3 10.5 109 331-439 108-220 (491)
255 KOG0376 Serine-threonine phosp 97.2 0.00023 5E-09 66.0 3.1 86 320-405 32-117 (476)
256 PLN03081 pentatricopeptide (PP 97.2 0.0036 7.8E-08 64.6 12.0 94 328-423 464-557 (697)
257 PF03704 BTAD: Bacterial trans 97.2 0.0033 7.1E-08 50.6 9.2 64 326-389 62-125 (146)
258 KOG2396 HAT (Half-A-TPR) repea 97.1 0.0074 1.6E-07 56.5 11.8 90 347-436 92-182 (568)
259 PF04184 ST7: ST7 protein; In 97.1 0.0053 1.2E-07 57.6 11.0 62 361-422 260-323 (539)
260 PLN03218 maturation of RBCL 1; 97.1 0.023 5.1E-07 60.5 17.0 96 327-423 543-643 (1060)
261 KOG4642 Chaperone-dependent E3 97.1 0.0009 2E-08 56.3 5.2 75 364-438 14-88 (284)
262 PF13174 TPR_6: Tetratricopept 97.1 0.0011 2.4E-08 37.7 4.1 30 363-392 3-32 (33)
263 KOG1585 Protein required for f 97.1 0.02 4.2E-07 48.7 12.7 108 324-431 29-147 (308)
264 PF14561 TPR_20: Tetratricopep 97.1 0.0067 1.4E-07 43.9 8.8 65 345-409 7-73 (90)
265 PLN03218 maturation of RBCL 1; 97.1 0.03 6.5E-07 59.7 17.2 94 328-421 651-746 (1060)
266 KOG1070 rRNA processing protei 97.1 0.012 2.6E-07 61.6 13.5 111 326-436 1530-1642(1710)
267 KOG2053 Mitochondrial inherita 97.0 0.015 3.2E-07 58.3 13.5 93 334-426 17-109 (932)
268 PF14853 Fis1_TPR_C: Fis1 C-te 97.0 0.0041 8.9E-08 39.6 6.3 39 362-400 3-41 (53)
269 KOG1586 Protein required for f 96.9 0.018 3.8E-07 48.6 11.3 105 326-430 113-231 (288)
270 PF04184 ST7: ST7 protein; In 96.9 0.01 2.3E-07 55.7 11.0 111 326-436 259-388 (539)
271 PF10300 DUF3808: Protein of u 96.9 0.011 2.3E-07 57.5 11.5 97 339-435 246-346 (468)
272 PLN03081 pentatricopeptide (PP 96.9 0.012 2.5E-07 60.9 12.4 90 329-421 328-418 (697)
273 KOG0545 Aryl-hydrocarbon recep 96.9 0.013 2.9E-07 49.7 10.0 72 326-397 230-301 (329)
274 PF13176 TPR_7: Tetratricopept 96.9 0.0023 5E-08 37.3 4.1 23 397-419 2-24 (36)
275 KOG3824 Huntingtin interacting 96.9 0.0045 9.9E-08 54.2 7.4 67 370-436 126-192 (472)
276 KOG2471 TPR repeat-containing 96.8 0.0032 7E-08 58.5 6.5 83 325-407 282-382 (696)
277 KOG1070 rRNA processing protei 96.8 0.055 1.2E-06 57.0 15.6 111 324-434 1562-1674(1710)
278 PLN03077 Protein ECB2; Provisi 96.8 0.028 6.1E-07 59.6 14.3 102 329-432 592-695 (857)
279 PF10602 RPN7: 26S proteasome 96.7 0.11 2.3E-06 43.2 14.6 103 323-425 33-144 (177)
280 PF09986 DUF2225: Uncharacteri 96.7 0.03 6.5E-07 48.0 11.3 99 339-437 90-210 (214)
281 PF13176 TPR_7: Tetratricopept 96.7 0.0034 7.3E-08 36.6 3.8 25 363-387 2-26 (36)
282 PF14561 TPR_20: Tetratricopep 96.7 0.016 3.5E-07 41.9 8.1 59 379-437 7-67 (90)
283 smart00028 TPR Tetratricopepti 96.6 0.0038 8.2E-08 34.8 4.0 30 396-425 3-32 (34)
284 KOG0546 HSP90 co-chaperone CPR 96.6 0.0033 7.2E-08 56.2 5.0 114 327-440 223-355 (372)
285 TIGR02561 HrpB1_HrpK type III 96.6 0.23 5E-06 39.1 14.3 87 324-410 8-94 (153)
286 KOG1915 Cell cycle control pro 96.6 0.12 2.5E-06 48.5 14.7 101 323-424 401-501 (677)
287 PF15015 NYD-SP12_N: Spermatog 96.6 0.018 3.9E-07 52.7 9.3 92 329-420 186-288 (569)
288 KOG1941 Acetylcholine receptor 96.5 0.026 5.6E-07 50.8 10.1 103 322-424 158-276 (518)
289 smart00028 TPR Tetratricopepti 96.5 0.005 1.1E-07 34.3 4.0 31 362-392 3-33 (34)
290 COG4976 Predicted methyltransf 96.5 0.0041 9E-08 52.1 4.7 62 334-395 3-64 (287)
291 KOG1941 Acetylcholine receptor 96.4 0.034 7.5E-07 50.1 10.2 98 327-424 123-236 (518)
292 PRK04841 transcriptional regul 96.4 0.043 9.3E-07 58.7 12.9 99 326-424 452-561 (903)
293 KOG3364 Membrane protein invol 96.4 0.056 1.2E-06 41.5 9.5 79 326-404 32-115 (149)
294 KOG4814 Uncharacterized conser 96.3 0.058 1.3E-06 52.2 11.6 98 327-424 355-458 (872)
295 PLN03077 Protein ECB2; Provisi 96.3 0.081 1.7E-06 56.2 14.2 100 325-426 553-656 (857)
296 PF02259 FAT: FAT domain; Int 96.3 0.14 2.9E-06 48.0 14.3 117 323-439 143-303 (352)
297 COG4976 Predicted methyltransf 96.2 0.0087 1.9E-07 50.3 4.8 61 369-429 4-64 (287)
298 PRK04841 transcriptional regul 96.2 0.058 1.3E-06 57.7 12.4 99 326-424 531-642 (903)
299 COG5191 Uncharacterized conser 96.2 0.014 3.1E-07 51.3 6.2 80 321-400 102-182 (435)
300 KOG1585 Protein required for f 96.1 0.25 5.5E-06 42.3 13.0 94 326-419 71-175 (308)
301 KOG2610 Uncharacterized conser 96.1 0.065 1.4E-06 47.8 9.8 106 323-428 172-283 (491)
302 COG2912 Uncharacterized conser 96.0 0.061 1.3E-06 46.9 9.3 76 327-402 182-257 (269)
303 KOG1308 Hsp70-interacting prot 95.8 0.011 2.4E-07 52.8 4.2 75 318-392 140-214 (377)
304 COG2912 Uncharacterized conser 95.7 0.094 2E-06 45.8 9.3 76 364-439 185-260 (269)
305 PF09613 HrpB1_HrpK: Bacterial 95.7 0.23 5.1E-06 39.8 10.7 81 361-441 11-91 (160)
306 KOG0530 Protein farnesyltransf 95.7 0.31 6.7E-06 42.2 11.9 103 323-425 74-178 (318)
307 PF08424 NRDE-2: NRDE-2, neces 95.6 0.32 6.9E-06 44.8 13.2 108 317-424 10-132 (321)
308 KOG0530 Protein farnesyltransf 95.6 0.14 3.1E-06 44.1 9.8 148 291-439 78-232 (318)
309 COG3914 Spy Predicted O-linked 95.5 0.36 7.8E-06 46.6 12.8 103 332-434 73-182 (620)
310 PF07079 DUF1347: Protein of u 95.3 1.4 3E-05 41.4 15.7 53 367-420 469-521 (549)
311 PF08631 SPO22: Meiosis protei 95.3 1.6 3.5E-05 39.3 16.3 103 323-425 32-152 (278)
312 PF08424 NRDE-2: NRDE-2, neces 95.3 0.43 9.4E-06 44.0 12.9 83 352-434 11-105 (321)
313 PF10579 Rapsyn_N: Rapsyn N-te 95.3 0.27 5.9E-06 34.0 8.4 63 325-387 5-70 (80)
314 KOG4151 Myosin assembly protei 95.3 0.11 2.3E-06 51.8 9.1 116 325-440 52-173 (748)
315 KOG2047 mRNA splicing factor [ 95.3 0.21 4.6E-06 48.7 10.7 102 324-425 423-542 (835)
316 KOG2396 HAT (Half-A-TPR) repea 95.1 0.15 3.4E-06 48.1 9.0 77 324-400 103-180 (568)
317 PF13374 TPR_10: Tetratricopep 95.0 0.054 1.2E-06 32.4 4.3 27 362-388 4-30 (42)
318 PF13374 TPR_10: Tetratricopep 95.0 0.063 1.4E-06 32.1 4.4 31 326-356 2-32 (42)
319 KOG4507 Uncharacterized conser 94.9 0.13 2.9E-06 49.3 8.2 74 329-402 645-718 (886)
320 COG5191 Uncharacterized conser 94.9 0.055 1.2E-06 47.7 5.3 46 320-365 135-181 (435)
321 KOG2047 mRNA splicing factor [ 94.8 0.7 1.5E-05 45.3 12.7 101 325-425 476-581 (835)
322 PRK13184 pknD serine/threonine 94.8 0.39 8.4E-06 50.3 12.0 106 331-437 480-595 (932)
323 PF13281 DUF4071: Domain of un 94.7 0.71 1.5E-05 42.9 12.3 103 325-427 140-259 (374)
324 PF09986 DUF2225: Uncharacteri 94.7 1.2 2.7E-05 38.1 13.0 79 324-402 116-208 (214)
325 KOG3617 WD40 and TPR repeat-co 94.5 0.51 1.1E-05 47.5 11.4 96 326-421 858-994 (1416)
326 PF07079 DUF1347: Protein of u 94.5 0.96 2.1E-05 42.5 12.5 62 324-386 460-521 (549)
327 PF02259 FAT: FAT domain; Int 94.4 0.67 1.5E-05 43.3 12.1 102 325-426 183-341 (352)
328 PF07720 TPR_3: Tetratricopept 94.4 0.17 3.7E-06 29.3 5.0 32 395-426 2-35 (36)
329 PF04910 Tcf25: Transcriptiona 94.4 0.95 2.1E-05 42.4 12.6 29 325-353 39-67 (360)
330 PF04910 Tcf25: Transcriptiona 94.3 1.8 3.9E-05 40.5 14.4 138 290-427 61-226 (360)
331 COG0790 FOG: TPR repeat, SEL1 94.3 1.6 3.5E-05 39.6 13.9 108 324-435 107-230 (292)
332 PF12862 Apc5: Anaphase-promot 94.2 0.25 5.5E-06 36.1 6.9 56 335-390 7-71 (94)
333 COG4649 Uncharacterized protei 94.1 2.5 5.3E-05 34.4 12.4 103 327-430 95-202 (221)
334 COG2976 Uncharacterized protei 94.1 0.65 1.4E-05 38.5 9.4 69 324-393 124-192 (207)
335 PF12862 Apc5: Anaphase-promot 94.0 0.33 7.1E-06 35.5 7.2 58 369-426 7-73 (94)
336 COG3898 Uncharacterized membra 94.0 2 4.3E-05 39.6 13.1 103 323-426 185-295 (531)
337 TIGR02561 HrpB1_HrpK type III 93.9 1 2.2E-05 35.6 9.7 79 363-441 13-91 (153)
338 COG3629 DnrI DNA-binding trans 93.8 0.45 9.8E-06 42.3 8.7 65 325-389 152-216 (280)
339 PF10516 SHNi-TPR: SHNi-TPR; 93.8 0.13 2.9E-06 30.1 3.6 28 362-389 3-30 (38)
340 COG3629 DnrI DNA-binding trans 93.5 1.5 3.2E-05 39.1 11.4 65 359-423 152-216 (280)
341 KOG1550 Extracellular protein 93.5 1.5 3.2E-05 43.9 12.9 93 328-424 290-394 (552)
342 PRK15180 Vi polysaccharide bio 93.4 0.23 5.1E-06 46.6 6.4 106 323-428 320-425 (831)
343 KOG2041 WD40 repeat protein [G 93.3 1.3 2.9E-05 43.8 11.5 112 296-419 766-877 (1189)
344 KOG2581 26S proteasome regulat 93.3 1.6 3.5E-05 40.3 11.4 113 325-438 168-290 (493)
345 KOG0529 Protein geranylgeranyl 93.2 1.3 2.9E-05 41.1 10.9 99 341-439 90-194 (421)
346 COG3118 Thioredoxin domain-con 93.2 1.8 3.8E-05 38.5 11.1 39 353-391 229-267 (304)
347 PF10516 SHNi-TPR: SHNi-TPR; 93.1 0.16 3.6E-06 29.7 3.3 30 327-356 2-31 (38)
348 KOG2300 Uncharacterized conser 93.1 3.2 6.9E-05 39.5 13.2 99 323-424 364-475 (629)
349 PF13281 DUF4071: Domain of un 92.9 4.6 9.9E-05 37.7 14.1 82 359-440 140-229 (374)
350 PF07721 TPR_4: Tetratricopept 92.9 0.16 3.5E-06 26.9 2.9 20 364-383 5-24 (26)
351 PF08631 SPO22: Meiosis protei 92.8 2.8 6.1E-05 37.8 12.7 102 336-437 3-131 (278)
352 TIGR03504 FimV_Cterm FimV C-te 92.6 0.66 1.4E-05 28.2 5.6 25 398-422 3-27 (44)
353 KOG1550 Extracellular protein 92.6 2 4.4E-05 42.9 12.4 111 325-439 243-371 (552)
354 PF07720 TPR_3: Tetratricopept 92.5 0.48 1E-05 27.4 4.7 20 329-348 4-23 (36)
355 PF04781 DUF627: Protein of un 92.4 1 2.2E-05 33.6 7.5 71 366-436 2-86 (111)
356 PF10373 EST1_DNA_bind: Est1 D 92.4 0.63 1.4E-05 41.9 8.0 62 345-406 1-62 (278)
357 COG3947 Response regulator con 92.1 0.67 1.4E-05 40.9 7.1 57 364-420 283-339 (361)
358 PF07721 TPR_4: Tetratricopept 92.1 0.24 5.3E-06 26.1 3.0 24 395-418 2-25 (26)
359 PF10373 EST1_DNA_bind: Est1 D 92.0 0.66 1.4E-05 41.7 7.7 61 379-439 1-61 (278)
360 PF10579 Rapsyn_N: Rapsyn N-te 92.0 1.5 3.3E-05 30.3 7.3 60 364-423 10-72 (80)
361 KOG1258 mRNA processing protei 91.9 6.1 0.00013 38.7 14.0 110 323-432 294-404 (577)
362 COG3898 Uncharacterized membra 91.8 3 6.4E-05 38.6 11.1 96 325-422 119-216 (531)
363 KOG2300 Uncharacterized conser 91.7 4.3 9.3E-05 38.7 12.2 95 324-418 44-151 (629)
364 COG3947 Response regulator con 91.7 0.85 1.8E-05 40.2 7.3 62 327-388 280-341 (361)
365 PF14863 Alkyl_sulf_dimr: Alky 91.7 0.82 1.8E-05 36.1 6.7 50 326-375 70-119 (141)
366 KOG1914 mRNA cleavage and poly 91.6 1.1 2.4E-05 43.0 8.5 106 316-423 10-120 (656)
367 PF12968 DUF3856: Domain of Un 91.5 4.2 9.1E-05 30.8 9.6 66 324-389 53-129 (144)
368 KOG3807 Predicted membrane pro 91.4 6 0.00013 35.7 12.3 56 365-420 280-337 (556)
369 KOG0890 Protein kinase of the 90.9 3.3 7.2E-05 47.0 12.3 116 323-440 1667-1801(2382)
370 KOG0546 HSP90 co-chaperone CPR 90.8 0.19 4.1E-06 45.4 2.7 83 327-409 276-358 (372)
371 PF11207 DUF2989: Protein of u 90.6 3.8 8.2E-05 34.4 9.9 73 341-414 121-198 (203)
372 COG0790 FOG: TPR repeat, SEL1 90.3 10 0.00022 34.3 13.7 85 341-430 170-273 (292)
373 PF11817 Foie-gras_1: Foie gra 90.2 3.6 7.7E-05 36.3 10.2 60 362-421 180-245 (247)
374 KOG3617 WD40 and TPR repeat-co 90.0 2.1 4.5E-05 43.5 9.1 64 360-423 858-941 (1416)
375 KOG0686 COP9 signalosome, subu 89.9 8 0.00017 36.0 12.0 97 325-421 149-256 (466)
376 KOG0529 Protein geranylgeranyl 89.9 12 0.00025 35.1 13.2 112 328-439 30-156 (421)
377 COG4455 ImpE Protein of avirul 89.7 12 0.00026 31.9 12.1 64 331-394 6-69 (273)
378 PF10602 RPN7: 26S proteasome 89.6 7.1 0.00015 32.4 10.9 66 360-425 36-104 (177)
379 COG3914 Spy Predicted O-linked 89.5 4.4 9.6E-05 39.5 10.6 90 345-434 50-142 (620)
380 KOG1914 mRNA cleavage and poly 89.1 4.9 0.00011 38.9 10.4 74 350-424 10-83 (656)
381 KOG1310 WD40 repeat protein [G 89.0 2.6 5.7E-05 40.5 8.6 73 321-393 403-478 (758)
382 PF11207 DUF2989: Protein of u 89.0 1.8 3.8E-05 36.3 6.8 57 324-381 139-199 (203)
383 PF11817 Foie-gras_1: Foie gra 88.9 7 0.00015 34.5 11.1 64 324-387 176-245 (247)
384 cd02682 MIT_AAA_Arch MIT: doma 88.8 3.1 6.8E-05 28.7 6.8 31 325-355 5-35 (75)
385 KOG1839 Uncharacterized protei 88.8 1.5 3.1E-05 46.8 7.5 103 322-424 969-1087(1236)
386 KOG4814 Uncharacterized conser 88.8 5.9 0.00013 39.1 10.9 72 362-433 356-433 (872)
387 PF10345 Cohesin_load: Cohesin 88.8 30 0.00064 35.3 17.9 109 323-432 56-179 (608)
388 PRK15490 Vi polysaccharide bio 88.4 8.4 0.00018 38.2 11.9 58 325-384 41-98 (578)
389 COG2909 MalT ATP-dependent tra 88.1 9 0.0002 39.5 12.1 100 325-424 414-527 (894)
390 smart00386 HAT HAT (Half-A-TPR 87.0 2.1 4.5E-05 23.4 4.5 29 409-437 2-30 (33)
391 PF09670 Cas_Cas02710: CRISPR- 86.9 16 0.00034 34.7 12.7 20 404-423 251-270 (379)
392 COG4455 ImpE Protein of avirul 86.8 4.1 9E-05 34.5 7.6 66 369-434 10-75 (273)
393 PRK15180 Vi polysaccharide bio 86.2 19 0.00041 34.5 12.3 96 333-428 296-391 (831)
394 PF10255 Paf67: RNA polymerase 86.0 1.6 3.4E-05 41.2 5.4 95 331-426 127-231 (404)
395 COG4941 Predicted RNA polymera 85.4 8 0.00017 35.1 9.1 98 341-439 311-410 (415)
396 smart00386 HAT HAT (Half-A-TPR 83.2 3.7 8.1E-05 22.3 4.4 26 341-366 2-27 (33)
397 PF09205 DUF1955: Domain of un 81.9 12 0.00026 29.2 7.5 56 369-424 95-150 (161)
398 KOG2561 Adaptor protein NUB1, 81.9 10 0.00022 35.7 8.5 96 328-423 165-296 (568)
399 PF10858 DUF2659: Protein of u 81.8 26 0.00056 28.3 10.9 111 327-437 94-214 (220)
400 PF10255 Paf67: RNA polymerase 81.7 8.5 0.00018 36.4 8.3 33 323-355 161-193 (404)
401 PF14863 Alkyl_sulf_dimr: Alky 81.7 5.6 0.00012 31.5 6.1 53 360-412 70-122 (141)
402 PF11846 DUF3366: Domain of un 81.5 8.8 0.00019 32.3 7.8 49 377-426 128-176 (193)
403 PF04190 DUF410: Protein of un 81.5 34 0.00073 30.5 11.7 94 324-418 8-114 (260)
404 PF04053 Coatomer_WDAD: Coatom 81.3 7.6 0.00016 37.5 8.1 82 325-419 346-427 (443)
405 PF04053 Coatomer_WDAD: Coatom 80.8 26 0.00056 34.0 11.5 86 329-414 298-409 (443)
406 KOG3783 Uncharacterized conser 80.7 34 0.00073 33.4 11.8 65 363-427 452-524 (546)
407 PHA02537 M terminase endonucle 80.2 5.8 0.00013 34.2 6.2 103 337-440 94-223 (230)
408 PF12854 PPR_1: PPR repeat 79.4 5.8 0.00013 22.4 4.2 25 361-385 8-32 (34)
409 TIGR03504 FimV_Cterm FimV C-te 79.3 4.2 9.2E-05 24.7 3.7 24 330-353 3-26 (44)
410 KOG1258 mRNA processing protei 79.2 70 0.0015 31.7 14.9 116 323-438 363-485 (577)
411 KOG1464 COP9 signalosome, subu 79.1 6.3 0.00014 34.6 6.0 25 399-423 150-174 (440)
412 PRK13184 pknD serine/threonine 78.6 20 0.00044 38.1 10.6 104 327-431 513-628 (932)
413 COG5187 RPN7 26S proteasome re 78.3 48 0.001 29.7 11.0 50 340-389 89-144 (412)
414 PF10952 DUF2753: Protein of u 78.0 12 0.00026 28.6 6.3 65 329-393 4-87 (140)
415 cd02682 MIT_AAA_Arch MIT: doma 77.9 14 0.0003 25.6 6.2 27 362-388 8-34 (75)
416 KOG3616 Selective LIM binding 77.7 8.6 0.00019 38.7 7.1 81 327-417 766-847 (1636)
417 KOG2758 Translation initiation 77.3 41 0.00089 30.5 10.5 68 322-389 125-196 (432)
418 PF13041 PPR_2: PPR repeat fam 76.4 15 0.00033 22.7 5.9 28 362-389 5-32 (50)
419 PF10345 Cohesin_load: Cohesin 76.4 40 0.00087 34.3 12.0 57 362-418 363-428 (608)
420 COG5107 RNA14 Pre-mRNA 3'-end 76.4 56 0.0012 31.3 11.6 117 319-436 35-160 (660)
421 TIGR02710 CRISPR-associated pr 76.1 63 0.0014 30.5 12.0 22 402-423 254-275 (380)
422 KOG1839 Uncharacterized protei 75.1 7.8 0.00017 41.7 6.5 100 324-423 930-1044(1236)
423 PRK11619 lytic murein transgly 75.0 67 0.0015 33.0 13.0 98 324-422 277-374 (644)
424 PF15469 Sec5: Exocyst complex 73.7 51 0.0011 27.4 11.9 28 408-435 153-180 (182)
425 PF09205 DUF1955: Domain of un 73.1 28 0.00061 27.2 7.4 61 329-389 88-149 (161)
426 PF04212 MIT: MIT (microtubule 73.0 9.8 0.00021 25.7 4.7 29 326-354 5-33 (69)
427 PF12854 PPR_1: PPR repeat 73.0 8.1 0.00018 21.8 3.6 27 325-351 6-32 (34)
428 COG5107 RNA14 Pre-mRNA 3'-end 72.9 35 0.00077 32.5 9.4 78 348-425 30-107 (660)
429 PF06957 COPI_C: Coatomer (COP 72.9 30 0.00066 33.0 9.2 103 329-431 207-337 (422)
430 cd02681 MIT_calpain7_1 MIT: do 72.5 9.8 0.00021 26.4 4.5 31 325-355 5-35 (76)
431 PF11846 DUF3366: Domain of un 72.2 15 0.00033 30.9 6.7 49 342-391 127-175 (193)
432 PF15015 NYD-SP12_N: Spermatog 72.0 7.4 0.00016 36.4 4.9 58 329-386 231-288 (569)
433 KOG2422 Uncharacterized conser 71.8 1.1E+02 0.0024 30.4 14.0 95 331-426 347-451 (665)
434 PF13041 PPR_2: PPR repeat fam 71.7 20 0.00043 22.1 5.6 31 326-356 3-33 (50)
435 cd02683 MIT_1 MIT: domain cont 71.5 31 0.00068 24.0 7.5 31 325-355 5-35 (77)
436 PF04348 LppC: LppC putative l 71.4 1.3 2.8E-05 44.0 0.0 103 323-425 21-129 (536)
437 PF01535 PPR: PPR repeat; Int 71.3 7.4 0.00016 20.8 3.2 20 366-385 6-25 (31)
438 KOG4014 Uncharacterized conser 70.2 62 0.0014 26.9 13.5 97 324-424 66-198 (248)
439 PRK15490 Vi polysaccharide bio 70.1 70 0.0015 32.0 11.3 89 328-418 10-98 (578)
440 KOG1538 Uncharacterized conser 69.3 19 0.0004 35.9 7.1 48 370-420 783-830 (1081)
441 KOG0985 Vesicle coat protein c 68.9 71 0.0015 34.1 11.2 62 323-389 1101-1162(1666)
442 COG4259 Uncharacterized protei 68.4 33 0.00072 25.1 6.4 35 396-430 74-108 (121)
443 smart00299 CLH Clathrin heavy 67.7 53 0.0012 25.7 8.7 47 337-384 18-64 (140)
444 COG1747 Uncharacterized N-term 67.7 1.3E+02 0.0028 29.5 12.5 109 325-435 98-246 (711)
445 COG5159 RPN6 26S proteasome re 67.7 72 0.0016 28.6 9.7 93 330-422 7-153 (421)
446 PF12739 TRAPPC-Trs85: ER-Golg 67.5 1.2E+02 0.0025 29.3 12.3 97 327-423 209-329 (414)
447 COG4649 Uncharacterized protei 67.3 49 0.0011 27.3 7.9 78 328-406 134-212 (221)
448 TIGR00756 PPR pentatricopeptid 66.4 15 0.00032 20.1 3.9 24 364-387 4-27 (35)
449 cd02679 MIT_spastin MIT: domai 66.1 14 0.00031 25.8 4.2 36 339-389 2-37 (79)
450 PF07219 HemY_N: HemY protein 65.2 39 0.00084 25.3 6.9 31 325-355 58-88 (108)
451 KOG0292 Vesicle coat complex C 64.8 1.3E+02 0.0029 31.6 12.0 110 326-435 991-1125(1202)
452 PF10952 DUF2753: Protein of u 64.5 47 0.001 25.5 6.9 66 363-428 4-88 (140)
453 KOG0276 Vesicle coat complex C 64.0 22 0.00048 35.1 6.4 78 330-423 618-695 (794)
454 PF13226 DUF4034: Domain of un 64.0 81 0.0017 28.3 9.6 105 333-437 7-142 (277)
455 cd00280 TRFH Telomeric Repeat 63.9 22 0.00047 29.4 5.5 52 331-383 116-167 (200)
456 PF07219 HemY_N: HemY protein 63.9 59 0.0013 24.3 9.2 46 364-409 63-108 (108)
457 cd02680 MIT_calpain7_2 MIT: do 63.4 17 0.00036 25.2 4.1 28 328-355 8-35 (75)
458 cd02677 MIT_SNX15 MIT: domain 63.0 48 0.001 22.9 7.0 30 326-355 6-35 (75)
459 COG5600 Transcription-associat 63.0 27 0.00058 32.4 6.4 61 366-426 183-252 (413)
460 KOG0276 Vesicle coat complex C 63.0 31 0.00067 34.2 7.2 42 188-230 496-538 (794)
461 COG2909 MalT ATP-dependent tra 62.7 1.4E+02 0.0029 31.4 11.9 85 325-409 457-552 (894)
462 COG5091 SGT1 Suppressor of G2 62.2 17 0.00038 31.8 4.9 90 338-427 7-112 (368)
463 KOG2114 Vacuolar assembly/sort 61.8 92 0.002 32.4 10.4 33 323-355 365-397 (933)
464 KOG3783 Uncharacterized conser 61.8 50 0.0011 32.3 8.3 84 322-405 263-349 (546)
465 COG2015 Alkyl sulfatase and re 61.3 22 0.00049 34.0 5.8 53 326-378 452-504 (655)
466 cd02678 MIT_VPS4 MIT: domain c 61.0 22 0.00047 24.6 4.5 29 326-354 6-34 (75)
467 PF13812 PPR_3: Pentatricopept 60.6 25 0.00054 19.1 4.1 23 364-386 5-27 (34)
468 KOG3807 Predicted membrane pro 60.5 1.4E+02 0.003 27.4 13.5 110 328-437 277-405 (556)
469 KOG1464 COP9 signalosome, subu 60.2 32 0.0007 30.4 6.2 52 337-388 38-93 (440)
470 cd02680 MIT_calpain7_2 MIT: do 59.8 21 0.00046 24.7 4.1 33 342-389 3-35 (75)
471 COG1747 Uncharacterized N-term 59.3 1E+02 0.0022 30.1 9.7 73 348-423 88-160 (711)
472 COG5187 RPN7 26S proteasome re 58.7 1.4E+02 0.003 26.9 11.8 104 323-426 112-224 (412)
473 KOG4459 Membrane-associated pr 58.3 56 0.0012 31.2 7.8 114 326-439 31-178 (471)
474 smart00745 MIT Microtubule Int 56.8 28 0.0006 24.0 4.6 23 331-353 13-35 (77)
475 KOG2422 Uncharacterized conser 56.7 2.2E+02 0.0047 28.5 14.3 117 303-419 261-403 (665)
476 PF08238 Sel1: Sel1 repeat; I 56.6 31 0.00067 19.6 4.2 13 410-422 24-36 (39)
477 PF09797 NatB_MDM20: N-acetylt 56.1 92 0.002 29.3 9.3 85 339-424 196-282 (365)
478 COG5536 BET4 Protein prenyltra 55.8 52 0.0011 29.3 6.7 115 323-437 105-236 (328)
479 smart00671 SEL1 Sel1-like repe 55.6 27 0.00058 19.4 3.7 12 375-386 20-31 (36)
480 PF04190 DUF410: Protein of un 54.8 1.6E+02 0.0034 26.3 10.7 36 354-389 134-170 (260)
481 cd02677 MIT_SNX15 MIT: domain 54.5 20 0.00042 24.8 3.3 31 343-388 4-34 (75)
482 cd02684 MIT_2 MIT: domain cont 54.3 34 0.00074 23.7 4.5 28 327-354 7-34 (75)
483 KOG2041 WD40 repeat protein [G 54.0 53 0.0012 33.3 7.2 20 332-351 740-759 (1189)
484 cd00280 TRFH Telomeric Repeat 53.8 1.3E+02 0.0028 25.1 13.0 111 326-437 13-153 (200)
485 PF09797 NatB_MDM20: N-acetylt 53.0 2E+02 0.0044 27.0 11.9 96 318-416 209-308 (365)
486 PF04212 MIT: MIT (microtubule 52.9 31 0.00068 23.2 4.2 15 405-419 16-30 (69)
487 PF12753 Nro1: Nuclear pore co 52.8 23 0.0005 33.1 4.4 46 376-423 334-391 (404)
488 cd02656 MIT MIT: domain contai 52.7 36 0.00078 23.4 4.5 26 329-354 9-34 (75)
489 PF12583 TPPII_N: Tripeptidyl 52.7 77 0.0017 24.6 6.4 47 324-370 74-120 (139)
490 PF09477 Type_III_YscG: Bacter 52.2 98 0.0021 23.2 6.8 54 328-386 42-95 (116)
491 KOG2581 26S proteasome regulat 51.6 2.2E+02 0.0048 27.1 14.1 105 319-426 240-352 (493)
492 PF02064 MAS20: MAS20 protein 51.3 34 0.00074 26.2 4.5 30 331-360 68-97 (121)
493 PF13226 DUF4034: Domain of un 51.0 1.2E+02 0.0025 27.4 8.4 66 344-409 61-148 (277)
494 cd02681 MIT_calpain7_1 MIT: do 50.1 34 0.00075 23.7 4.0 24 365-388 11-34 (76)
495 smart00745 MIT Microtubule Int 50.1 71 0.0015 21.9 5.8 16 341-356 4-19 (77)
496 PF02064 MAS20: MAS20 protein 50.0 48 0.001 25.5 5.1 29 364-392 67-95 (121)
497 KOG3616 Selective LIM binding 49.7 1.6E+02 0.0034 30.4 9.6 20 400-419 771-790 (1636)
498 KOG0889 Histone acetyltransfer 48.9 1.7E+02 0.0036 36.0 11.0 79 360-439 2812-2898(3550)
499 PF08311 Mad3_BUB1_I: Mad3/BUB 48.2 1.3E+02 0.0028 23.3 9.4 82 297-387 43-126 (126)
500 cd02683 MIT_1 MIT: domain cont 47.5 94 0.002 21.6 6.3 14 343-356 4-17 (77)
No 1
>PLN02722 indole-3-acetamide amidohydrolase
Probab=100.00 E-value=9.8e-59 Score=435.03 Aligned_cols=301 Identities=58% Similarity=0.978 Sum_probs=241.7
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||||||+|++|+|+|||||||||+||+||||||||||+|+||+.|++|+++++|++||||||++|++.++++
T Consensus 108 ~pGGSSsGSAaAVAaG~~p~AlGtDtgGSIRiPAa~cGvvG~KPT~G~vp~~G~~pla~sld~~G~~ar~v~D~a~~~~~ 187 (422)
T PLN02722 108 VPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGVIPMAQSFDTVGWFARDPVILKRVGHV 187 (422)
T ss_pred CCCcCcHHHHHHHHcCCCceEeecCCCcccccChhHcceEEEecCCCccCCCCCCcccCCCCcccceeCCHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcccCCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHhcccc-cccccccccccccCCchhhhhc---------
Q 013459 81 LLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQV-LKHENLGEYFDSKVPSLKGFHK--------- 150 (442)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~-~~~~~~~~~~~~~~p~~~~~~~--------- 150 (442)
+.+.+..+...+.||++..+.+.......+++.+.+.++++.+.+.+. ++.++++..++...+.+..+..
T Consensus 188 l~g~~~~d~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 267 (422)
T PLN02722 188 LLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIVKHVNLGDYVEDKVPSLKHFMSKEIKEQEYN 267 (422)
T ss_pred HcCCCCCCCcCCceEEechhhhhhcccccHHHHHHHHHHHHHHhcCCCeeeecchhHHHHHhHHHHHHHhhcccccceec
Confidence 998776666677888887654321122346677888888888774432 2333332222222222211100
Q ss_pred --cchhHHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEee
Q 013459 151 --TNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTP 228 (442)
Q Consensus 151 --~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~P 228 (442)
........+..+..+|....+..++....+.+++.+++++..+..++..+|.++++.|.++++.+.++|+++|+||+|
T Consensus 268 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~s~~~y~~a~~~r~~~~~~~~~~~~~~D~Ll~P 347 (422)
T PLN02722 268 IPSLAALSSAMRLLQRYEFKINHGEWITAVKPEFGPGISERIWEAVRTTEEKIDACQSVKTELRAALTTLLGEFGVLVIP 347 (422)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 001122344446666777778888887778899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHHHH
Q 013459 229 TTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYA 301 (442)
Q Consensus 229 t~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~ 301 (442)
|+|.+||+++........+...++.+|.++|++|+|+++||++..+|+|+|+|+++++++|..++.++..+..
T Consensus 348 t~p~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlqivg~~~~D~~lL~~a~~l~~ 420 (422)
T PLN02722 348 TVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVSVSLLAKHGSDGFLLNLVESLYG 420 (422)
T ss_pred CCCCCCCCcccCcchHHHHHHHHHHhhhcccccCCCEEEEeCCCCCCCCEEEEEECCCCChHHHHHHHHHHHh
Confidence 9999999886432222334445567899999999999999999888999999999999999999999987754
No 2
>PRK08310 amidase; Provisional
Probab=100.00 E-value=1.9e-56 Score=418.79 Aligned_cols=285 Identities=35% Similarity=0.564 Sum_probs=232.5
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|+.|.++++|++||||||++|++.++++
T Consensus 107 ~pGGSSgGsAaaVAag~~~~aiGtDtGGSIRiPAa~cGv~G~KPT~Grvs~~G~~~~~~~~d~~Gp~arsv~D~~~~~~~ 186 (395)
T PRK08310 107 VPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEGVMPLAPSFDTVGWFARDIALLERVGEV 186 (395)
T ss_pred CCCCCchHHHHHHHcCCcceEEecCCCCCeecchHhcCeeEeecCCCcccCCCCcccccCCCeeeeeeCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcccCCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHhc--ccccccccccccccccCCchhhhhccchhHHHH
Q 013459 81 LLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLGEYFDSKVPSLKGFHKTNGELKNV 158 (442)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 158 (442)
+.+.+..+...+++|++..+.. ...++++.++++++++.|+. ..++ +++.. ...+.. +...
T Consensus 187 l~g~~~~~~~~~~ri~~~~~~~---~~~~~~v~~a~~~a~~~L~~~~g~vv-~~~~~------~~~~~~-------~~~~ 249 (395)
T PRK08310 187 LLGDDAQEFPLTQRLLIPVDLF---ALLDPAVRAALEAALARLRPHLGPAK-PASVP------PLSLDE-------WYEA 249 (395)
T ss_pred HcCCCcccCCcCceEEEecccc---ccCCHHHHHHHHHHHHHHHHhCCcee-eecCC------cccHHH-------HHHH
Confidence 9876544434457888776543 23567899999999999863 2221 11110 001111 2223
Q ss_pred HHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCC
Q 013459 159 MRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG 238 (442)
Q Consensus 159 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~ 238 (442)
+..+...+....+..+.......+.+.++.++..+..++..+|.++.+.|+.+++.+.++|+++|+||+||++.+||+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~~ 329 (395)
T PRK08310 250 FRVLQAAEAWETHGAWISSGNPQLGPGVADRFAAGAEVTADQVEAARARRAAFARELAALLGPDAVLLLPTVPGAAPLRG 329 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhchhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCccCC
Confidence 33344445555666677666777999999999988889999999999999999999999999999999999999999887
Q ss_pred CCCcccHHHHHHHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHHHHH
Q 013459 239 GKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 302 (442)
Q Consensus 239 ~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~~ 302 (442)
........+...++.||.++|++|+|+++||++..+|+|+|+|++++++.|..+++++..+++.
T Consensus 330 ~~~~~~~~~~~~~~~~t~~~N~~G~PaisvP~g~~~glPvglQivg~~~~D~~lL~~a~~le~~ 393 (395)
T PRK08310 330 APFEALEAYRERALRLLCIAGLAGLPQISLPLASVDGAPFGLSLIGPRGSDRSLLALAQTIAAA 393 (395)
T ss_pred CccchHHHHHHHHHhhceeehhcCCCeEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHhh
Confidence 5432222333344568999999999999999997799999999999999999999999998764
No 3
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-56 Score=424.36 Aligned_cols=289 Identities=26% Similarity=0.328 Sum_probs=227.8
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||||||+|++++|+|||||||||+|||||||||||||+||||+.|++|.++++|++|||||||+|+++++++
T Consensus 153 ~pGGSSgGSAaAVAag~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV~D~a~l~~v 232 (475)
T COG0154 153 VPGGSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDV 232 (475)
T ss_pred CCCcCchHHHHHHHhCCcchhcccCCCCchhhhhhhhCceeeCCCCCccCCCCCccccCCcCccCcccCCHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccC
Q 013459 81 LLQLPFAA----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKV 142 (442)
Q Consensus 81 ~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~ 142 (442)
+.+.+..+ ...+.||+++.++... .+..+++.+++.++++.|+ |+.+ .++. +
T Consensus 233 ~~g~D~~d~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~-~~~~~~v~~~~~~a~~~l~~~Ga~v-~~v~--------l 302 (475)
T COG0154 233 IAGPDPRDSPLPPPPPVPPALAGKDLKGLRIGVPKELGGG-GPLDPDVRAAFEAAVKALEAAGAEV-VEVS--------L 302 (475)
T ss_pred HcCCCCcccccccccCccchhhccCCCCcEEEEECccccc-CCCcHHHHHHHHHHHHHHHHCCCEE-Eecc--------C
Confidence 99865442 1234578888776542 2345689999999999997 4444 2222 3
Q ss_pred CchhhhhccchhHHHHHH-HHHHHHHHHhhH-H-HHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHH---HHHHH
Q 013459 143 PSLKGFHKTNGELKNVMR-LIQRYEFKNNHN-E-WIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEM---RSAIS 216 (442)
Q Consensus 143 p~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~---~~~~~ 216 (442)
|.+.... ....++ .......+.... . +.......+++++++++..+...+..+|.++...|... ++.+.
T Consensus 303 p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ri~~G~~~~~~~~~~a~~~~~~~~~i~~~~~ 377 (475)
T COG0154 303 PLLSDDY-----ALAAYYLARFDGERYGLRAADLYGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQKTLIRRAFD 377 (475)
T ss_pred Cchhhhh-----hhhHHHHHHhhhhhhhhcchhhhhhhhhhcccHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3211100 111111 011111111111 1 45556677999999999999999999999999888555 99999
Q ss_pred hhccCCCEEEeeCCCCCCCCCCC-CC-cccHHHHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHHH
Q 013459 217 SLLKDDGILVTPTTAYPPPKLGG-KE-MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLL 293 (442)
Q Consensus 217 ~~~~~~d~li~Pt~~~~a~~~~~-~~-~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~ll 293 (442)
++|.++|+||+||+|.+||+++. .. .........+..+|.++|++|+|+++||+|.. +|||+|+|+++++++|..++
T Consensus 378 ~~f~~~D~ll~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlqlig~~~~d~~LL 457 (475)
T COG0154 378 KLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDATLL 457 (475)
T ss_pred HHHHhCCEEEeCCCCCCCcccccccccccCHHHHhhhccccccccccCCCeEEeccCCCCCCCCeeEEEecCCCCHHHHH
Confidence 99999999999999999999987 21 12222333344689999999999999999998 59999999999999999999
Q ss_pred HHHHHHHHHHH
Q 013459 294 DTVQNMYASLQ 304 (442)
Q Consensus 294 ~~~~~~~~~~~ 304 (442)
+++..+++...
T Consensus 458 ~~a~~~E~~~~ 468 (475)
T COG0154 458 RLAAALEQALG 468 (475)
T ss_pred HHHHHHHHhhC
Confidence 99999988654
No 4
>PRK07056 amidase; Provisional
Probab=100.00 E-value=1.7e-55 Score=419.80 Aligned_cols=287 Identities=24% Similarity=0.328 Sum_probs=230.5
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||||||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++||||||++|++.++++
T Consensus 156 ~~GGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~v 235 (454)
T PRK07056 156 IPGGSSSGAAVSVADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVACCALVDAV 235 (454)
T ss_pred CCCCcchHHHHHHHcCCCceEEeeCCCCccccchHhhCceeeccCCCccCCCCcccCccccCcccCccCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcccC----CCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchhhhhccchh
Q 013459 81 LLQLPFAAQ----RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE 154 (442)
Q Consensus 81 ~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 154 (442)
+.+.++.++ ..+.||++..+++. ...++++.++++++++.|+ |+.+ ++++ +|.+.....
T Consensus 236 l~g~d~~d~~~~~~~~lrig~~~~~~~--~~~~~~v~~~~~~a~~~L~~~G~~v-~~~~--------~~~~~~~~~---- 300 (454)
T PRK07056 236 LAGEEPVVPAARPLEGLRLAVPTTVVL--DGLDATVAAAFERALKRLSAAGAII-EEIA--------FPELAELAE---- 300 (454)
T ss_pred hcCCCCCCcccccccCcEEEEcchhhc--cCCCHHHHHHHHHHHHHHHHCCCEE-EEec--------CcchHHHHH----
Confidence 987654432 34578888765431 2356889999999999997 4443 2222 222211100
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCC
Q 013459 155 LKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPP 234 (442)
Q Consensus 155 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a 234 (442)
+. ....+...|....+..++......+.+.++.++..+..++..+|.++++.|..+++.|.++|.++|+||+||++.+|
T Consensus 301 ~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a 379 (454)
T PRK07056 301 IN-AKGGFSAAESYAWHRPLLARHRDQYDPRVAARILRGEPMSAADYIDLLAARAAWIARAAARLARFDALVMPTVPIVP 379 (454)
T ss_pred HH-HhhhHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCEEEECCCCCCC
Confidence 10 01112334444445556666667889999999998888999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccHHHHH---HHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHHHHHH
Q 013459 235 PKLGGKEMLSEDYQN---RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL 303 (442)
Q Consensus 235 ~~~~~~~~~~~~~~~---~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~ 303 (442)
|+++........+.. .++.||.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+++.+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~glPvGlqivg~~~~D~~lL~~a~~le~~l 451 (454)
T PRK07056 380 PRIADLEADDAAFFRTNALLLRNPSLINFLDGCALSLPCHAPGEAPVGLMLAGAPGRDDRLLAIALAVEAVL 451 (454)
T ss_pred CCcccccccchhhHHHHHHHhhcCccchhcCCCEEEEeCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 988653211222211 233579999999999999999987899999999999999999999999998765
No 5
>TIGR02715 amido_AtzE amidohydrolase, AtzE family. Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
Probab=100.00 E-value=1.3e-55 Score=420.94 Aligned_cols=282 Identities=26% Similarity=0.364 Sum_probs=227.2
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+||||||||||+||+|++++|+|||||||||+|||||||||||||+||||+.|++|+++++|++||||||++|++.++++
T Consensus 145 ~~GGSSgGsAaaVAag~~~~alGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~ 224 (452)
T TIGR02715 145 IAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPASLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDV 224 (452)
T ss_pred CCCcchHHHHHHHHCCCCceEEeeCCCCcchhhHHHhCceeeeCCCCCccCCCCCCCccccCcccCeeCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHhcccccccccccccccccCC
Q 013459 81 LLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVP 143 (442)
Q Consensus 81 ~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~~~~~~p 143 (442)
+.+.+..+ ...+.||++..+++. ...++++.++++++++.|..... ++ .|
T Consensus 225 l~g~~~~d~~~~~~p~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~~~---v~--------~~ 291 (452)
T TIGR02715 225 MQGPDPQDPFCTDRPAEPTVPLLPAGISGLRIAVLGGWFQ--QNADPEALAAVGRVAKALGATTI---VE--------LP 291 (452)
T ss_pred hcCCCCCCcccccCCCcchhhhhhcCCCCCEEEEECcccc--CCCCHHHHHHHHHHHHhcCCeee---ec--------CC
Confidence 98653221 124568888765542 23567899999999998842211 11 12
Q ss_pred chhhhhccchhHHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCC
Q 013459 144 SLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDG 223 (442)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d 223 (442)
.... ....+..+...|....+..++......+.+.++.++..+..++..+|.++++.|+.+++.|.++|+++|
T Consensus 292 ~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D 364 (452)
T TIGR02715 292 DAER-------ARAAAFVITASEGGNLHLDALRTRPQDFDPATRDRLLAGALLPASWYAQAQRFRHWFRDAIRELFQRVD 364 (452)
T ss_pred chHH-------HHHHHHHHHHHHHHHHHHHHhhhchhhcCHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2110 112223344445555556666666677999999999888888999999999999999999999999999
Q ss_pred EEEeeCCCCCCCCCCCCC----cccHHHHHHHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHH
Q 013459 224 ILVTPTTAYPPPKLGGKE----MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNM 299 (442)
Q Consensus 224 ~li~Pt~~~~a~~~~~~~----~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~ 299 (442)
+||+||++.+||+++... .....+...+..||.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+
T Consensus 365 vll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlQivg~~~~D~~lL~~a~~l 444 (452)
T TIGR02715 365 VLIAPATPCSAPLIGQETMIIDGVPVPVRANLGIFTQPISFAGLPVLAAPLPRPGRLPIGVQLIAAPWREDLCLRAAAVL 444 (452)
T ss_pred EEEeCCCCCCCCcCcccccccCccchhhhhhHHhcCccchhcCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 999999999999886421 1111122234458999999999999999998889999999999999999999999998
Q ss_pred HHH
Q 013459 300 YAS 302 (442)
Q Consensus 300 ~~~ 302 (442)
++.
T Consensus 445 e~~ 447 (452)
T TIGR02715 445 ERQ 447 (452)
T ss_pred HHh
Confidence 763
No 6
>PRK09201 amidase; Provisional
Probab=100.00 E-value=1.5e-55 Score=421.41 Aligned_cols=282 Identities=27% Similarity=0.343 Sum_probs=227.8
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||++|++.++++
T Consensus 152 ~pGGSSgGsAaaVAaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~ 231 (465)
T PRK09201 152 IAGGSSGGSAAAVAAGLVPFTLGSDTNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDV 231 (465)
T ss_pred CCCcchHHHHHHHHcCCCceEEecCCCCcchhhhHHhCceeeeCCCCccCCCCCCCcccccCcccCccCCHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcccC-----------------CCCceEEEcccchhhcCCchhHHHHHHHHHHHHHhcccccccccccccccccCC
Q 013459 81 LLQLPFAAQ-----------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVP 143 (442)
Q Consensus 81 ~~~~~~~~~-----------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~~~~~~p 143 (442)
+.+.+..+. ..+.||++..+++. ...++++.++++++++.|.... .+++ |
T Consensus 232 l~g~d~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~~---~v~~--------~ 298 (465)
T PRK09201 232 LQGPDPQDPFQADRPAEPTAPLLDRGAEGLRIAVLGGYFA--QWADPEARAAVDRVAKALGATR---EVEL--------P 298 (465)
T ss_pred hcCCCCCCcccccCCCcchhhhhccCCCCCEEEEECcccc--CCCCHHHHHHHHHHHHHccCce---eecC--------C
Confidence 986542221 23467888765542 2356889999999999883211 1111 2
Q ss_pred chhhhhccchhHHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCC
Q 013459 144 SLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDG 223 (442)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d 223 (442)
.... ....+..+...|....+..++......++|.++.++..+..++..+|.++++.|+.+++.|.++|+++|
T Consensus 299 ~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D 371 (465)
T PRK09201 299 EAAR-------ARAAAFIITASEGGNLHLPALRTRPQDFDPASRDRLLAGAMLPAAWYVQAQRFRRWFRQAVLELFEHVD 371 (465)
T ss_pred chhH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1111 112223344456555566666666677999999999989889999999999999999999999999999
Q ss_pred EEEeeCCCCCCCCCCCCC---cc-cHHHHHHHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHH
Q 013459 224 ILVTPTTAYPPPKLGGKE---ML-SEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNM 299 (442)
Q Consensus 224 ~li~Pt~~~~a~~~~~~~---~~-~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~ 299 (442)
+||+||++.++|+++... .. ...+...+..||.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+
T Consensus 372 ~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQivg~~~~D~~lL~~A~~l 451 (465)
T PRK09201 372 VLIAPATPCSAPLIGQETMRIDGVELPVRANLGILTQPISFIGLPVVAVPLRTPGGLPIGVQLIAAPWREDLALRAAAAL 451 (465)
T ss_pred EEEeCCCCCCCCcccccccccCcchhhhhhhHHHhCccccccCCCeEEEeCCCCCCcCeEEEEECCCCCHHHHHHHHHHH
Confidence 999999999999886521 11 11122234468999999999999999997789999999999999999999999988
Q ss_pred HHH
Q 013459 300 YAS 302 (442)
Q Consensus 300 ~~~ 302 (442)
++.
T Consensus 452 e~~ 454 (465)
T PRK09201 452 EQQ 454 (465)
T ss_pred Hhh
Confidence 763
No 7
>PRK06102 hypothetical protein; Provisional
Probab=100.00 E-value=2e-55 Score=419.02 Aligned_cols=288 Identities=24% Similarity=0.337 Sum_probs=226.8
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||++|++.++++
T Consensus 152 ~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~ 231 (452)
T PRK06102 152 IPGGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAA 231 (452)
T ss_pred CCCCCcHHHHHHHHcCCCceEEecCCCCcchhhhHHhCceeEecCCCcccCCCCcccccccCcccCccCCHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc----CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHhcccc-cccccccccccccCCchhhhhccchhH
Q 013459 81 LLQLPFAA----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQV-LKHENLGEYFDSKVPSLKGFHKTNGEL 155 (442)
Q Consensus 81 ~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~ 155 (442)
+.+.+..+ +..+.||++..+.+. ...++++.++++++++.|+..+. |++++ +|.+..... +
T Consensus 232 l~g~~~~~~~~~~~~~~ri~~~~~~~~--~~~~~~v~~~~~~a~~~L~~~G~~v~~~~--------~~~~~~~~~----~ 297 (452)
T PRK06102 232 MRGLTAPDVVRRPLAGLRLVVPETVVF--DDAEPGVRAAFEAAVERLQAAGALVERQA--------FPAFQEILD----L 297 (452)
T ss_pred HcCCCCccccccCCCCCEEEEecchhc--ccCCHHHHHHHHHHHHHHHhCCCEEEecC--------CccHHHHHH----H
Confidence 98754322 234457777655432 33578899999999999974332 12222 233221100 1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHh-hCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCC
Q 013459 156 KNVMRLIQRYEFKNNHNEWIES-VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPP 234 (442)
Q Consensus 156 ~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a 234 (442)
...+..+...|....+..++.. ....+.+.++.++..+..++..+|.++++.|..+++.+.++|+ +|+||+||++.+|
T Consensus 298 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~-~D~ll~Pt~~~~a 376 (452)
T PRK06102 298 IARHGWLVTAEAFALHQERLDGPDAARMDPRVVKRTRLGRKITASDYIALLEARERLIAQVTRELG-GALLATPTVAHVA 376 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHc-CCEEEeCCCCCCC
Confidence 1112223334555445555543 4456899999999888889999999999999999999999998 8999999999999
Q ss_pred CCCCCCCcccHHH---HHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHHHHHHHHHHHHH
Q 013459 235 PKLGGKEMLSEDY---QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASL 303 (442)
Q Consensus 235 ~~~~~~~~~~~~~---~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~ 303 (442)
|+++........+ ...++.||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+++.+
T Consensus 377 p~~~~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~glPvGlQivg~~~~D~~lL~~a~~le~~l 449 (452)
T PRK06102 377 PPLAPLEADDDLFFATNLKTLRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLLRAALAVEAVI 449 (452)
T ss_pred CCccccccCchhhhhhhhhhhhcCccccccCCCeEEEecCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 9886421111111 22344689999999999999999987 899999999999999999999999998765
No 8
>PRK07235 amidase; Provisional
Probab=100.00 E-value=2.4e-55 Score=421.18 Aligned_cols=285 Identities=23% Similarity=0.299 Sum_probs=220.4
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+||||||||||+||+|++++|||||||||||+||+||||||||||+|+||+.|++|.++++|++||||||++|++.++++
T Consensus 167 ~~GGSSgGsAAaVAaG~v~~aiGtDtGGSIRiPAa~cGvvGlKPT~G~vp~~G~~~~~~sld~~Gpmarsv~D~a~ll~v 246 (502)
T PRK07235 167 SAGGSSSGSAALVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEV 246 (502)
T ss_pred CCCCCcHHHHHHHHcCCCCeEEecCCCCCcCccHHHcCcceecCCCcccCCCCCCCcccccCeeeceeCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcccC------------------CCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccc
Q 013459 81 LLQLPFAAQ------------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS 140 (442)
Q Consensus 81 ~~~~~~~~~------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~ 140 (442)
+.+.+..++ ..+.||++..+.+.. ...++++.++++++++.|+ |+.+ ++++++
T Consensus 247 iag~d~~d~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~G~~V-~~v~~p----- 319 (502)
T PRK07235 247 IAGRDGLDPRQPAQPPVDDYTAALDRGVKGLKIGILREGFGL-PNSEPEVDEAVRAAAKRLEDLGATV-EEVSIP----- 319 (502)
T ss_pred HcCCCCCCccccccCCccchhHHhccCCcCCEEEEeccccCC-CCCCHHHHHHHHHHHHHHHHCCCEE-EEeCCC-----
Confidence 987543221 234678887654321 2246789999999999997 4443 233322
Q ss_pred cCCchhhhhccchhHHHHHHHHHHH----------------------HHHHhhHHHHHhhCCCCCHhHHHHHHhcc----
Q 013459 141 KVPSLKGFHKTNGELKNVMRLIQRY----------------------EFKNNHNEWIESVKPALDPDISAEIGEML---- 194 (442)
Q Consensus 141 ~~p~~~~~~~~~~~~~~~~~~~~~~----------------------e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 194 (442)
..... ...+..+... +....+..+...+...+++.++.++..+.
T Consensus 320 ---~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 389 (502)
T PRK07235 320 ---LHRLA-------LAIWNPIATEGATAQMMLGNGYGFNWKGLYDTGLLDAFGAGWRERADDLSETVKLVMLLGQYGLE 389 (502)
T ss_pred ---chhhH-------HHHHHHHHHHHHHHHhhhccccccccccccchhHHHHHhhhhhcchhhcCHHHHHHHHhcccccc
Confidence 11100 0000000000 11111212223345578899998887665
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcccHHHHH---HHhhhhccccccccceeeecCc
Q 013459 195 EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQN---RAFSLLSIASVSGCCQVTVPLG 271 (442)
Q Consensus 195 ~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~---~~~~~t~~~n~~g~p~~~~p~~ 271 (442)
.++..+|.++++.|+.+++.|+++|+++|+||+||+|.+||+++........+.. .++.+|.++|++|+|+++||+|
T Consensus 390 ~~~~~~y~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PalsvP~g 469 (502)
T PRK07235 390 RYHGRYYAKARNLARRLRAAYDEALRKYDLLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDVTGHPAMSVPCG 469 (502)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeeCCCCCCCCCcccccCchHHHHHHHHhhhccCccchhhCCCeEEEECC
Confidence 3577899999999999999999999999999999999999998754322223322 2345789999999999999999
Q ss_pred cCCCCceeEEEecccCCcHHHHHHHHHHHHH
Q 013459 272 YYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 302 (442)
Q Consensus 272 ~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~~ 302 (442)
..+|+|+|+|+++++++|..+++++..+|+.
T Consensus 470 ~~~GlPvGlQlvg~~~~D~~lL~~A~~~E~~ 500 (502)
T PRK07235 470 LVDGLPVGLMLVGRHFDEATILRAAAAFEAS 500 (502)
T ss_pred cCCCCCeEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 8899999999999999999999999998763
No 9
>PRK05962 amidase; Validated
Probab=100.00 E-value=4.2e-55 Score=413.48 Aligned_cols=288 Identities=23% Similarity=0.342 Sum_probs=229.3
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||++|++.++++
T Consensus 126 ~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~~~~~~v 205 (424)
T PRK05962 126 IPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNGLVGFKPTARRIPLEGAFPLSPSLDSIGPLARTVADCAAADAV 205 (424)
T ss_pred CCCcCcHHHHHHHHcCCCceEEeeCCCCcchhhhHhhCceeeecCCCceeCCCcccCccccCccccccCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc----CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchhhhhccchh
Q 013459 81 LLQLPFAA----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE 154 (442)
Q Consensus 81 ~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 154 (442)
+.+.+..+ ...+.||++..+.+. ...++++.++++++++.|+ |+.+ +++++ |.+.....
T Consensus 206 l~g~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v-~~~~~--------~~~~~~~~---- 270 (424)
T PRK05962 206 MAGEKPIPLEVLPVAGLRIGLPKGYLL--ADMEPDVAAAFEASLAALEKAGARI-ADLAI--------DDLIARLA---- 270 (424)
T ss_pred HcCCCCCcccccCcCCcEEEEEccccc--ccCCHHHHHHHHHHHHHHHHCCCEE-EEecc--------chHHHHHH----
Confidence 98654322 234568888765432 2356889999999999987 4444 22222 22110000
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCC
Q 013459 155 LKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPP 234 (442)
Q Consensus 155 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a 234 (442)
.......+...|....+..++......+++.++.++..+..++..+|.++++.|..+++.|.++|+++|+||+||+|.++
T Consensus 271 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a 350 (424)
T PRK05962 271 EATRIGSIAGIEASHIHADWLADLDANVDIRVKRPLSRRIKVPLEAYHRLMRTRAALARAMDERLAGFDMFALPATPIVA 350 (424)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhchhhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCC
Confidence 00011123334555555566666667899999999998888999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccHHH---HHHHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHHHHHHH
Q 013459 235 PKLGGKEMLSEDY---QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 304 (442)
Q Consensus 235 ~~~~~~~~~~~~~---~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~~ 304 (442)
|++.........+ ...++.||.++|++|+|+++||++. +|+|+|+|++++++.|..+++++..+++.++
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~Pa~svP~g~-~glPvGlqlvg~~~~D~~lL~~a~~le~~l~ 422 (424)
T PRK05962 351 PTIASVSEDEEEYDRVENLLLRNTQVANQFDLCSITLPMPG-MALPAGLMLTARNGSDRRLLAAAASVEKLLE 422 (424)
T ss_pred CCccccccchHHHHHHHHHHHhhCcCccccCCCeEEEECCC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 9886532222212 1223458999999999999999974 6999999999999999999999999988653
No 10
>PRK06169 putative amidase; Provisional
Probab=100.00 E-value=4.2e-54 Score=412.09 Aligned_cols=282 Identities=19% Similarity=0.252 Sum_probs=222.9
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+||||||||||+||+|++++|+|||||||||+|||||||||||||+|+||+.|+.|.+ ++|++||||||++|++.++++
T Consensus 152 ~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~vs~~g~~~~~-~~d~~Gp~arsv~D~~~~~~~ 230 (466)
T PRK06169 152 TAGGSSGGAAAAVALGMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGRVPLYPASPFG-TLAHVGPMTRTVADAALLLDV 230 (466)
T ss_pred CCCcCcHHHHHHHHcCCCceeeecCCCCcchhchHhhCceeecCCCCccCCCCCCCCc-cccccCCeeCCHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999998886 999999999999999999999
Q ss_pred hhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--ccccccccccccccccc
Q 013459 81 LLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSK 141 (442)
Q Consensus 81 ~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~ 141 (442)
+.+.+..+ ..++.||++..++.. ...++++.++++++++.|+ |+.+ ++++.
T Consensus 231 l~g~~~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v-~~~~~------- 300 (466)
T PRK06169 231 IARPDARDWSALPPPTTSFLDALDRDVRGLRIAYSPTLGY--VDVDPEVAALVAQAVQRLAALGARV-EEVDP------- 300 (466)
T ss_pred hcCCCCCCCcccCCCCcchhhhhccCCCCCEEEEECCcCC--CCCCHHHHHHHHHHHHHHHHcCCEE-EEeCC-------
Confidence 98643221 124567887655431 2356889999999999997 4443 22111
Q ss_pred CCchhhhhccchhHHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccC
Q 013459 142 VPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKD 221 (442)
Q Consensus 142 ~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~ 221 (442)
+ +.. ....+..+...+....+..+.......+++.++.++..+..++..+|.++++.|+.+++.|.++|++
T Consensus 301 -~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~ 371 (466)
T PRK06169 301 -G-FSD-------PVEAFHVLWFAGAARLLRALPPGQRALLDPGLRRIAERGATYSASDYLDATAVRAALGARMGAFHER 371 (466)
T ss_pred -C-cch-------HHHHHHHHHHHHHHHHHHHhhhcchhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 111 1112222223333333344444455678999999999999999999999999999999999999999
Q ss_pred CCEEEeeCCCCCCCCCCCCCc--ccHHHHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHHHHHHHH
Q 013459 222 DGILVTPTTAYPPPKLGGKEM--LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQN 298 (442)
Q Consensus 222 ~d~li~Pt~~~~a~~~~~~~~--~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~ll~~~~~ 298 (442)
+|+||+||+|.+||+++.... ........+..||.++|++|+|+++||++.. +|+|+|+|++++++.|..+++++..
T Consensus 372 ~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~d~~lL~~a~~ 451 (466)
T PRK06169 372 YDLLLTPTLPIPAFEAGHDVPPGSGLTDWTQWTPFTYPFNLTQQPAASVPCGFTAAGLPVGLQIVGPRHSDDLVLRVARA 451 (466)
T ss_pred CCEEEeCCCCCCCCCCCccCCCccchhhhhhhhcccccccccCCCeEEEecCcCCCCCceEEEEecCCCcHHHHHHHHHH
Confidence 999999999999998864211 1111112334689999999999999999986 8999999999999999999999999
Q ss_pred HHHH
Q 013459 299 MYAS 302 (442)
Q Consensus 299 ~~~~ 302 (442)
+++.
T Consensus 452 le~~ 455 (466)
T PRK06169 452 YEQA 455 (466)
T ss_pred HHhh
Confidence 8875
No 11
>PRK07488 indole acetimide hydrolase; Validated
Probab=100.00 E-value=1.1e-53 Score=409.83 Aligned_cols=284 Identities=26% Similarity=0.364 Sum_probs=219.0
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+||||||||||+||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++||||||++|++.++++
T Consensus 153 ~~GGSSgGsAaaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~G~~p~~~~~d~~Gp~arsv~D~a~~~~v 232 (472)
T PRK07488 153 IAGGSSGGTAAAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLALLDAV 232 (472)
T ss_pred CCCCCchHHHHHHHcCCCceeeecCCCCCeecChHhhCceeeccCCCCCCCCCcccccccCCcccCccCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc---CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchhhhhccchhH
Q 013459 81 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL 155 (442)
Q Consensus 81 ~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 155 (442)
+.+.++.+ +..+.||++..+... ...++++.++++++++.|+ |+.++ +++ +|.+.++.
T Consensus 233 l~g~d~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~-~~~--------~~~~~~~~------ 295 (472)
T PRK07488 233 ITGDAALPAPVALAGLRLGVPAAPFW--DGLDPDVAAVAEAALAKLAAAGVTFV-ELD--------LPGLHELN------ 295 (472)
T ss_pred hcCCCCCCCCcCcCCCEEEEEcchhc--cCCCHHHHHHHHHHHHHHHHCCCEEE-eeC--------CcCHHHHh------
Confidence 98765432 235678888754331 2356789999999999997 44442 222 22221110
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhCCC----------CCHhHHHHHHh---cccCCHHHHHHHHHH-HHHHHHHHHhhcc-
Q 013459 156 KNVMRLIQRYEFKNNHNEWIESVKPA----------LDPDISAEIGE---MLEISETVIENCKSI-RNEMRSAISSLLK- 220 (442)
Q Consensus 156 ~~~~~~~~~~e~~~~~~~~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~~a~~~-r~~~~~~~~~~~~- 220 (442)
...+..+...|....+..++...... ..+.+...+.. +..++..+|.++++. |+.+++.|.++|+
T Consensus 296 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~ 375 (472)
T PRK07488 296 EAVGFPIALYEALADLRAYLRENGAGVSFEELVARIASPDVRAIFRDLLDPPQISEDAYRAALDVGRPRLQAWYRQAFAR 375 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00112233345555555554433221 25666655532 335788899999887 9999999999998
Q ss_pred -CCCEEEeeCCCCCCCCCCCCCc------ccHHHHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHH
Q 013459 221 -DDGILVTPTTAYPPPKLGGKEM------LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFL 292 (442)
Q Consensus 221 -~~d~li~Pt~~~~a~~~~~~~~------~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~l 292 (442)
++|+||+||++.++|+++.... ....+ ..++.+|.++|++|+|+++||+|.. +|+|+|+|++++++.|..+
T Consensus 376 ~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlig~~~~d~~L 454 (472)
T PRK07488 376 HGLDAILFPTTPLTAPPIGDDDTVILNGAAVPTF-ARVIRNTDPASNAGLPGLSLPAGLTPHGLPVGLELDGPAGSDRRL 454 (472)
T ss_pred CCCCEEEeCCCCCCCccccccccccccccchhhh-hhhhcccccccccCCCeEEEecCCCCCCCCeeEEEeCCCCCHHHH
Confidence 6899999999999998865311 11222 2344578999999999999999987 7999999999999999999
Q ss_pred HHHHHHHHHH
Q 013459 293 LDTVQNMYAS 302 (442)
Q Consensus 293 l~~~~~~~~~ 302 (442)
++++..+|+.
T Consensus 455 L~~A~~lE~~ 464 (472)
T PRK07488 455 LAIGRALERV 464 (472)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 12
>PRK07487 amidase; Provisional
Probab=100.00 E-value=1.4e-53 Score=408.23 Aligned_cols=286 Identities=20% Similarity=0.211 Sum_probs=220.9
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCccc----CC-CCCcccccccCCHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP----IS-TSLDTVGWFARDPKILR 75 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p----~~-~~~d~~Gp~ar~~~d~~ 75 (442)
+|||||||||||||+|++++|+|||||||||+|||||||||||||+||||..|+++ ++ .++|++||||||++|++
T Consensus 152 ~~GGSSgGsAaAVAaG~~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~is~~g~~~~~~~l~~~~~~~~Gplarsv~D~a 231 (469)
T PRK07487 152 TPGGSSGGAAAAVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPIGAQLMSVQGPLARTVADLR 231 (469)
T ss_pred CCCcchHHHHHHHHcCCCceeeecCCCCccccchhhcCceeecCCCCccCCCCCCccccccccccccccCCeeCCHHHHH
Confidence 58999999999999999999999999999999999999999999999999999873 33 47899999999999999
Q ss_pred HHHHHhhCCCccc----------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCC
Q 013459 76 HVGHVLLQLPFAA----------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVP 143 (442)
Q Consensus 76 ~~~~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p 143 (442)
.+++++.+.+..+ ...+.||++..+... ...++++.++++++++.|+ |+.+ +++ ..+|
T Consensus 232 ~~~~~l~g~d~~d~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v-~~~-------~~~~ 301 (469)
T PRK07487 232 LALAAMAAPDPRDPWWVPAPLEGPPRPKRVALCVRPDG--LDVDPEVEAALRDAARRLEDAGWTV-EEV-------DDTP 301 (469)
T ss_pred HHHHHHhCCCCCCCccCCCCccCCCCCcEEEEECCCCC--CCCCHHHHHHHHHHHHHHHHCCCEE-Eec-------CCCC
Confidence 9999998654322 124568888765432 2356889999999999997 4443 221 0123
Q ss_pred chhhhhccchhHHHHHHHHHHHHHHHhhHHHHHhh-CCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCC
Q 013459 144 SLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESV-KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDD 222 (442)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~ 222 (442)
.+.. ....+..+...+....+..++... .+.+.+.+...+..+..++..+|.++++.|+.+++.|.++|+++
T Consensus 302 ~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~ 374 (469)
T PRK07487 302 PLRE-------AAELQERLWLGDGYEALLAAAEAEGDPGALAALRGQRAKARPLDLAGYMNALARRATLTRQWQLFFEDY 374 (469)
T ss_pred chHH-------HHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2221 222333344455555555554432 34466666666677778899999999999999999999999999
Q ss_pred CEEEeeCCCCCCCCCCCCCcccHHHHH--HHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHHH
Q 013459 223 GILVTPTTAYPPPKLGGKEMLSEDYQN--RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMY 300 (442)
Q Consensus 223 d~li~Pt~~~~a~~~~~~~~~~~~~~~--~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~~ 300 (442)
|+||+||+|.+||+++........+.. ....+|.++|++|+|+++||++..+|+|+|+|++++++.|..+++++..+|
T Consensus 375 D~ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~lL~~a~~lE 454 (469)
T PRK07487 375 PLLLMPVSAELPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPTGLVGGVPVGVQLVAGRFREDLCLAAGEAIE 454 (469)
T ss_pred CEEEcCCCCCCCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEECccCCCcceeEEEeCCCCCHHHHHHHHHHHH
Confidence 999999999999988642222222211 111246788999999999999988899999999999999999999999988
Q ss_pred HHH
Q 013459 301 ASL 303 (442)
Q Consensus 301 ~~~ 303 (442)
+.+
T Consensus 455 ~~~ 457 (469)
T PRK07487 455 ARG 457 (469)
T ss_pred Hhh
Confidence 754
No 13
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=100.00 E-value=1.4e-53 Score=410.60 Aligned_cols=286 Identities=25% Similarity=0.288 Sum_probs=224.0
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||+|||+|+++||+|||||||||+||+||||||||||+|+||..|++|.++++|++||||||++|++.++++
T Consensus 110 ~~GGSSsGSAaAVAaG~v~~alGTDtgGSiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vG~~Arsv~D~~~~l~v 189 (561)
T TIGR02713 110 ISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSLDCVSIFALTVADAEQVLRI 189 (561)
T ss_pred CCCCCcHHHHHHHHcCCCceEEeecCCCcchhhhHHhCceeEecCCCCccCCCccccccCCCeeechhCCHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcccC-------------CCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCch
Q 013459 81 LLQLPFAAQ-------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSL 145 (442)
Q Consensus 81 ~~~~~~~~~-------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~ 145 (442)
+.+.+..++ ..+.||+++.+.... ...++++.++++++++.|+ |+++ +++++ |.+
T Consensus 190 ~~g~d~~d~~s~~~p~~~~~~~~~~lrigv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~G~~v-~~v~~--------~~~ 259 (561)
T TIGR02713 190 AAAPDARDPYSRPLPAAALRRLPPPPRVGVPRAAQLE-FFGDSQAEAAFAAAVERLEALGVEV-VEIDF--------APF 259 (561)
T ss_pred hcCCCCcCccccCCCchhhcccCCCCEEEEECchhcC-CCCCHHHHHHHHHHHHHHHHCCCEE-EEecc--------hhH
Confidence 986543221 134678876521100 1134678999999999997 4443 22222 221
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEE
Q 013459 146 KGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGIL 225 (442)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~l 225 (442)
.+. ....+...+..+....+..++..+...+.|.+...+..+..++..+|.+++..|+.+++.++++|+++|+|
T Consensus 260 ~~~------~~~l~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~l~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~DvL 333 (561)
T TIGR02713 260 LET------AALLYEGPWVAERYAAVGEFVEAQPDALDPVVRGIITSATRFSAADAFAAQYRLAALRRKAEALLAGVDVL 333 (561)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHhhChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 111 00111112223444455566666777899999999998888999999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHHHHHHHHHHHHH
Q 013459 226 VTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASL 303 (442)
Q Consensus 226 i~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~ 303 (442)
|+||++.+++..+ ..............||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+++..
T Consensus 334 l~Pt~p~~~~~~~-~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~ 411 (561)
T TIGR02713 334 LVPTAPTHPTIEE-VLADPVGLNSRLGTYTNFVNLLDLCAVAVPAGFRSDGLPFGVTLIGPAFHDAALASLGRRLQAAS 411 (561)
T ss_pred EeCCCCCCCCchh-ccCCchhhhhhhhcccccccccCCceEEeecccCCCCCCEEEEEEcCCCChHHHHHHHHHHHhcc
Confidence 9999999865332 2112222223334589999999999999999987 899999999999999999999999998753
No 14
>PRK07486 amidase; Provisional
Probab=100.00 E-value=1.9e-53 Score=409.51 Aligned_cols=286 Identities=21% Similarity=0.220 Sum_probs=218.9
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcc-cCCCCCcccccccCCHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGII-PISTSLDTVGWFARDPKILRHVGH 79 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~-p~~~~~d~~Gp~ar~~~d~~~~~~ 79 (442)
+||||||||||+||+|++++|+|||||||||+||+||||||||||+|+||+.|++ |+++++|++||||||++|++.+++
T Consensus 157 ~pGGSSgGsAaaVAaG~~~~aiGtDtgGSIRiPAa~cGvvGlKPT~G~vs~~g~~~~~~~s~d~~Gp~arsv~D~a~~~~ 236 (484)
T PRK07486 157 SAGGSSGGAAAALALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTVEDVALLLA 236 (484)
T ss_pred CCCcCcHHHHHHHHcCCCceEeecCCCCCeecchhhhCceeecCCCCcccCCCCcccccccccccCCeeCCHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999998855 789999999999999999999999
Q ss_pred HhhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccc
Q 013459 80 VLLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS 140 (442)
Q Consensus 80 ~~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~ 140 (442)
++.+.+..+ ...+.||++..++... ...++++.++++++++.|+ |+.+ +++..
T Consensus 237 ~l~g~d~~d~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~G~~v-~~~~~------ 308 (484)
T PRK07486 237 VQAGYDPRDPLSLAEDPARFAQPLEADLRGKRIAWLGDWGGY-LPMEAGVLELCEAALATLRELGCDV-EAALP------ 308 (484)
T ss_pred HHhCCCCCCCccccCCCcchhhHhccCCCCCEEEEeCcccCC-CCCCHHHHHHHHHHHHHHHHCCCEE-EEeCC------
Confidence 998653221 1245688887554321 1256789999999999997 4443 11111
Q ss_pred cCCchhhhhccchhHHHHHHHHHHHHHHHhhHHHHH--hhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhh
Q 013459 141 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIE--SVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSL 218 (442)
Q Consensus 141 ~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~ 218 (442)
+ +. . ....+.+..+........+..... .....+++.+..++..+..++..+|.++++.|+.+++.|.++
T Consensus 309 --~-~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~ 380 (484)
T PRK07486 309 --A-FP-P----ERLWRAWLTLRHFLVGGSLLALYRDPARRALLKPEAIWEIEGGLALTAAQVYEASVIRSAWYQALLRL 380 (484)
T ss_pred --C-cc-h----HHHHHHHHHHHHHHHHHhHHHHhccccchhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 10 0 001122222222222222222222 234568899999998888899999999999999999999999
Q ss_pred ccCCCEEEeeCCCCCCCCCCCCC-----cccHHHHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHH
Q 013459 219 LKDDGILVTPTTAYPPPKLGGKE-----MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFL 292 (442)
Q Consensus 219 ~~~~d~li~Pt~~~~a~~~~~~~-----~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~l 292 (442)
|+++|+||+||++.++|.++... .........++.+|.++|++|+|+++||++.. +|+|+|+|+++++++|..+
T Consensus 381 ~~~~D~ll~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~glPvGlQlvg~~~~D~~l 460 (484)
T PRK07486 381 FERYDFLALPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVVVPATLAGLPAISVPVGFNAAGLPMGMQIIGPPRADLAV 460 (484)
T ss_pred HhcCCEEEcCCCCCCCCccccccccccccchhhhhhhhhcccccccccCCCeEEEECCcCCCCCceEEEEECCCCCHHHH
Confidence 99999999999999998775311 11111222344578899999999999999986 8999999999999999999
Q ss_pred HHHHHHHHHH
Q 013459 293 LDTVQNMYAS 302 (442)
Q Consensus 293 l~~~~~~~~~ 302 (442)
++++..+++.
T Consensus 461 L~~a~~le~~ 470 (484)
T PRK07486 461 LQLAHAYEQA 470 (484)
T ss_pred HHHHHHHHhc
Confidence 9999998875
No 15
>PRK08186 allophanate hydrolase; Provisional
Probab=100.00 E-value=1.8e-53 Score=414.22 Aligned_cols=285 Identities=26% Similarity=0.329 Sum_probs=224.6
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||++||+|+++||||||||||||+||+||||||||||+|+||..|++|.++++|++||||||++|++.++++
T Consensus 147 ~~GGSSsGSAaAVAaG~~~~alGTDtgGSiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vGp~Arsv~D~~~~l~v 226 (600)
T PRK08186 147 VSGGSSSGSAVAVALGLVSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAV 226 (600)
T ss_pred CCCCCcHHHHHHHHcCCcceEeeecCCCcchhhhHHhCceEEeCCCCcccCCCcccccccCCceecccCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc-------------CCCCceEEEcccc-hhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCc
Q 013459 81 LLQLPFAA-------------QRSPRQIIIADDC-FELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPS 144 (442)
Q Consensus 81 ~~~~~~~~-------------~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~ 144 (442)
+.+.+..+ ...+.||+++.+. ... ..++++.++++++++.|+ |+.+ +++++ |.
T Consensus 227 l~g~d~~D~~s~~~p~~~~~~~~~~lrIgv~~~~~~~~--~~~~~v~~a~~~a~~~L~~~G~~v-~ei~~--------~~ 295 (600)
T PRK08186 227 MAGFDPADPYSRANPADAPAALPAGPRVGVPRAAQLEF--FGDAEAEAAFAAALARLEALGAEL-VEIDF--------SP 295 (600)
T ss_pred hcCCCCCCcccccCCcccccccCCCCEEEEEcchhccc--cCCHHHHHHHHHHHHHHHHcCCeE-EEecc--------hh
Confidence 98654322 1234677776421 111 135679999999999997 4443 22222 22
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCE
Q 013459 145 LKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGI 224 (442)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~ 224 (442)
+.+. ....+......|....+.+++..+...+.|.+...+..+..++..+|.+++..|+.+++.++++|+++|+
T Consensus 296 ~~~~------~~~~~~~~~~ae~~~~~~~~~~~~~~~~~p~~~~~i~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~D~ 369 (600)
T PRK08186 296 FLEA------ARLLYEGPWVAERYAAVGEFLEAHPDAVDPVVRGIIAGAAAFSAADAFRALYRLAELRRAAEAVLAGIDA 369 (600)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHhhChhhcCHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 2110 1111222223344455666776666778999999999888999999999999999999999999999999
Q ss_pred EEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHHHHHHHHHHHHH
Q 013459 225 LVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASL 303 (442)
Q Consensus 225 li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~ 303 (442)
||+||+|.+++ +................||.++|++|+|+++||++.. +|+|+|+|++++++.|..+++++..+++..
T Consensus 370 Ll~Pt~p~~~~-~~~~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~ 448 (600)
T PRK08186 370 LLVPTAPTHPT-IAEVAADPIGLNSRLGTYTNFVNLLDLCALAVPAGFRADGLPFGVTLIAPAFADQALADLAARLQAAL 448 (600)
T ss_pred EEeCCCCCCCC-chhhcCCchhhhhhhhhccccccccCCCeEEEecccCCCCCCeeEEEEcCCCCHHHHHHHHHHHHhhc
Confidence 99999999875 3322222222222334589999999999999999976 899999999999999999999999998754
No 16
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.
Probab=100.00 E-value=1.7e-53 Score=408.22 Aligned_cols=280 Identities=27% Similarity=0.370 Sum_probs=213.3
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+||||||||||+||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++||||||++|++.++++
T Consensus 135 ~~GGSSgGsAaaVAaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~G~vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~ 214 (460)
T TIGR00132 135 VPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQPASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFARTVEDIALLLDV 214 (460)
T ss_pred CCCcCcHHHHHHHHcCCCCeEeecCCCCcchhhhHhcCceeECCCCCcCCCCCCcCcccCCCcccCeeCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--ccccccccccccccccc
Q 013459 81 LLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSK 141 (442)
Q Consensus 81 ~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~ 141 (442)
|.+.+..+ ...+.||++..+... ..++++.++++++++.|+ |+.+ .+++
T Consensus 215 l~g~~~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~~---~~~~~v~~a~~~a~~~L~~~G~~v-~~~~-------- 282 (460)
T TIGR00132 215 ISGHDKRDSTSAKVPDPEFFEELKKDLKGLKVGVVKEFSE---EMDKEVQEKFENALEVLEELGAEI-VEVS-------- 282 (460)
T ss_pred HcCCCCCCCcccCCCccchhhhhhcccCCCEEEEECcccc---cCCHHHHHHHHHHHHHHHHCCCEE-EEeC--------
Confidence 98653221 123567887765432 246789999999999997 4444 2222
Q ss_pred CCchhhhhccchhHHHHHHHHHHHHHHHh------------------hHHHHHh-hCCCCCHhHHHHHHhcccCC-----
Q 013459 142 VPSLKGFHKTNGELKNVMRLIQRYEFKNN------------------HNEWIES-VKPALDPDISAEIGEMLEIS----- 197 (442)
Q Consensus 142 ~p~~~~~~~~~~~~~~~~~~~~~~e~~~~------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~----- 197 (442)
+|.+... ...+..+...|.... +.+++.. ....+++.+..++..+...+
T Consensus 283 ~p~~~~~-------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 355 (460)
T TIGR00132 283 FPHVKYA-------LPIYYIISPSEASSNLARYDGIRYGYRIEEPNSLKELYAKTRAEGFGEEVKRRIMLGNYALSAGYY 355 (460)
T ss_pred CCcHHHH-------HHHHHHHHHHHHHHHHhccccccccccccccccHHHHHhhcchhhcCHHHHHHHHccccccccchh
Confidence 2222111 111111222222111 2223332 23447788877776554433
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCccc-HHHHHHHhhhhccccccccceeeecCccC-CC
Q 013459 198 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS-EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DK 275 (442)
Q Consensus 198 ~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~-~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~ 275 (442)
..+|.++++.|..+++.+.++|+++|+||+||++.+||+++...... ..+. ...||.++|++|+|+++||++.. +|
T Consensus 356 ~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~--~~~~t~~~nl~g~PaisvP~g~~~~G 433 (460)
T TIGR00132 356 DKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKIGEKLDDPLEMYL--SDILTVPANLAGLPAISVPCGVKEKG 433 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCchHhhhc--ccceeccccccCCCcEEEecCcCCCC
Confidence 34488999999999999999999999999999999999987532211 1121 12378999999999999999988 89
Q ss_pred CceeEEEecccCCcHHHHHHHHHHHH
Q 013459 276 CPTSVSFIARHGGDRFLLDTVQNMYA 301 (442)
Q Consensus 276 lp~g~~~~~~~~~d~~ll~~~~~~~~ 301 (442)
+|+|+|++++++.|..+++++..+++
T Consensus 434 lPvGlqlig~~~~D~~lL~~A~~le~ 459 (460)
T TIGR00132 434 LPIGLQIIGKCFDDKTLLQVSYAFEQ 459 (460)
T ss_pred CCeeEEEECCCCchHHHHHHHHHHhh
Confidence 99999999999999999999998875
No 17
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed
Probab=100.00 E-value=1.6e-53 Score=408.23 Aligned_cols=281 Identities=25% Similarity=0.347 Sum_probs=211.9
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||++||+|++++|+|||||||||+||+||||||||||+|+||+.|++|.++++|++||||||++|++.++++
T Consensus 135 ~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~G~vp~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~ 214 (459)
T PRK00012 135 VPGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNA 214 (459)
T ss_pred CCCCCcHHHHHHHHcCCCceEEeeCCCCccchhHHHcCceeecCCCCcccCCCCcCcccCCCcccCccCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--ccccccccccccccccc
Q 013459 81 LLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSK 141 (442)
Q Consensus 81 ~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~ 141 (442)
+.+.+..+ ...+.||++..+.+. ...++++.++++++++.|+ |+.++ ++++
T Consensus 215 l~g~d~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~-~~~~------- 284 (459)
T PRK00012 215 IAGHDPKDSTSADVPVPDYTAALGKDIKGLKIGVPKEYFG--EGLDPEVKEAVEAAIKKLEDLGAEIV-EVSL------- 284 (459)
T ss_pred HhCCCCCCcccccCCCCchhhhhcccccccEEEEEccccc--ccCCHHHHHHHHHHHHHHHHCCCEEE-EeCC-------
Confidence 98643221 124457887765431 2346789999999999987 44442 2222
Q ss_pred CCchhhhhccchhHHHHHHHHHHHHHHHh------------------hHHHHHh-hCCCCCHhHHHHHHhcccCC-----
Q 013459 142 VPSLKGFHKTNGELKNVMRLIQRYEFKNN------------------HNEWIES-VKPALDPDISAEIGEMLEIS----- 197 (442)
Q Consensus 142 ~p~~~~~~~~~~~~~~~~~~~~~~e~~~~------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~----- 197 (442)
|.+... ...+..+...++... +.+++.. ....+++.+..++..+...+
T Consensus 285 -~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 356 (459)
T PRK00012 285 -PHTKYA-------LPAYYIIAPAEASSNLARYDGVRYGYRAEDAKDLEEMYEKTRSEGFGEEVKRRIMLGTYVLSAGYY 356 (459)
T ss_pred -CchHHH-------HHHHHHHHHHHHHHHHhhcccccccccccccccHHHHHhhhhhhccCHHHHHHHHhCcchhccccc
Confidence 222111 111111222222211 2222222 22347788888877554332
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccC-CCC
Q 013459 198 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKC 276 (442)
Q Consensus 198 ~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~l 276 (442)
...|.++.+.|..+++.|.++|+++|+||+||++.+||+++........ ....+.||.++|++|+|+++||++.. +|+
T Consensus 357 ~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~-~~~~~~~t~~~n~~G~PaisvP~g~~~~gl 435 (459)
T PRK00012 357 DAYYLKAQKVRTLIKQDFEKAFEKVDVILGPTAPTTAFKIGEKTDDPLA-MYLSDIFTVPANLAGLPAISVPAGFDDGGL 435 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCcccccccCchHh-hhccccccccccccCCCcEEEecCCCCCCC
Confidence 3458889999999999999999999999999999999988653211111 11122379999999999999999987 699
Q ss_pred ceeEEEecccCCcHHHHHHHHHHH
Q 013459 277 PTSVSFIARHGGDRFLLDTVQNMY 300 (442)
Q Consensus 277 p~g~~~~~~~~~d~~ll~~~~~~~ 300 (442)
|+|+|+++++++|..+++++..++
T Consensus 436 PvGlqlvg~~~~D~~LL~~a~~~E 459 (459)
T PRK00012 436 PVGLQLIGKYFDEETLLNVAYAFE 459 (459)
T ss_pred CEEEEEECCCCchHHHHHHHHHhC
Confidence 999999999999999999998753
No 18
>PRK06061 amidase; Provisional
Probab=100.00 E-value=4.5e-53 Score=405.73 Aligned_cols=282 Identities=22% Similarity=0.303 Sum_probs=217.4
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||++||+|++++|+|||||||||+||+||||||||||+|+||+.|+.|.++++|++||||||++|++.++++
T Consensus 160 ~~GGSSgGsAaAVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~ 239 (483)
T PRK06061 160 TPGGSSGGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLARTVADAALLLDA 239 (483)
T ss_pred CCCCChHHHHHHHHcCCCceEeecCCCCcchhchhhcCceeecCCCCccCCCCCCcccccCceeCCEeCCHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc---------------CCCCceEEEcccchh--hcCCchhHHHHHHHHHHHHHh--ccccccccccccccccc
Q 013459 81 LLQLPFAA---------------QRSPRQIIIADDCFE--LLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSK 141 (442)
Q Consensus 81 ~~~~~~~~---------------~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~ 141 (442)
+.+.+..+ ...+.||++..+... .....++++.++++++++.|+ |+.++ ++..
T Consensus 240 l~g~d~~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~-~~~~------- 311 (483)
T PRK06061 240 ASGNHPGDRHRPPPVTVSDAVGRAPGPLRIALSTRFPFTGFPAKLHPEIRAAVRRVAEQLALLGHTVV-PADP------- 311 (483)
T ss_pred HhCCCCCCCcccCCccchhhhccCCCCcEEEEECCccccccccCCCHHHHHHHHHHHHHHHHCCCEEE-EeCC-------
Confidence 98653211 123467777643221 112356889999999999997 44432 1111
Q ss_pred CCchhhhhccchhHHHHHHHHHHHHHHHhhHHHHHh--hCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhc
Q 013459 142 VPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES--VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLL 219 (442)
Q Consensus 142 ~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~ 219 (442)
+..... . ..... .....+..+... ....+.+.++.++..+..++..+|.++++.|+.+++.+.++|
T Consensus 312 -~~~~~~-------~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~ 379 (483)
T PRK06061 312 -DYGLRL-------G--LNFLP--RSTAGLRDWAERLGDPVLLDPRTVSNARMGRLLSQAILRLARAAEAAAQRRVGSIF 379 (483)
T ss_pred -chhhHH-------H--HHHHH--HHHHHHHHHHhhccChhhCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 110000 0 00000 000111122222 334578899999988888999999999999999999999999
Q ss_pred cCCCEEEeeCCCCCCCCCCCCCcc--c--HHHHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHHHH
Q 013459 220 KDDGILVTPTTAYPPPKLGGKEML--S--EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLD 294 (442)
Q Consensus 220 ~~~d~li~Pt~~~~a~~~~~~~~~--~--~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~ll~ 294 (442)
+++|+||+||++.+||+++..... . ......+..||.++|++|+|+++||++.. +|+|+|+|++++++.|..+++
T Consensus 380 ~~~D~ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~LL~ 459 (483)
T PRK06061 380 DIVDVVLAPTTAQPPPRVGAFDRLGGWATDRAMIAACPYTWPWNVLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLLIS 459 (483)
T ss_pred hcCCEEEcCCCCCCCCCcccccccccchhhhhhhhcccccccccccCCCeEEEecCcCCCCCCeeeEEECCCCCHHHHHH
Confidence 999999999999999988742211 0 11112334589999999999999999987 899999999999999999999
Q ss_pred HHHHHHHH
Q 013459 295 TVQNMYAS 302 (442)
Q Consensus 295 ~~~~~~~~ 302 (442)
++..+++.
T Consensus 460 ~A~~le~~ 467 (483)
T PRK06061 460 LAAQLEAV 467 (483)
T ss_pred HHHHHHhh
Confidence 99999875
No 19
>PRK06170 amidase; Provisional
Probab=100.00 E-value=7.4e-53 Score=406.48 Aligned_cols=286 Identities=21% Similarity=0.249 Sum_probs=216.1
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCccc-----C--CCCCcccccccCCHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP-----I--STSLDTVGWFARDPKI 73 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p-----~--~~~~d~~Gp~ar~~~d 73 (442)
+|||||||||||||+|++++|+|||||||||+|||||||||||||+||||+.|++| + +.++|++||||||++|
T Consensus 155 ~~GGSSgGsAaAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~Grv~~~G~~~~~~~~~~~~~~~d~~Gp~arsv~D 234 (490)
T PRK06170 155 TPGGSSGGSAAALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARD 234 (490)
T ss_pred CCCCChHHHHHHHHcCCCceeeecCCCCccccChHHhCceeecCCCCcCcCCCcCCccccccccccccccccCccCCHHH
Confidence 68999999999999999999999999999999999999999999999999999988 4 3468999999999999
Q ss_pred HHHHHHHhhCCCccc---------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccc
Q 013459 74 LRHVGHVLLQLPFAA---------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGE 136 (442)
Q Consensus 74 ~~~~~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~ 136 (442)
++.+++++.+.+..+ ...+.||++..+... ...++++.++++++++.|+ |+.++ +++.
T Consensus 235 ~a~~l~~l~g~d~~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~-~~~~-- 309 (490)
T PRK06170 235 LALLLDVMAGPDPLDGGVAYRLALPPARHGRLKDFRVLVLDEHPL--LPTDAAVRAAIERLAAALADAGARVV-RHSP-- 309 (490)
T ss_pred HHHHHHHHhCCCccccccccccCCCcccccccCCCEEEEECCcCC--CCCCHHHHHHHHHHHHHHHHCCCEEE-EcCC--
Confidence 999999998754322 113467888765432 2356889999999999997 44442 2110
Q ss_pred cccccCCchhhhhccchhHHHHHHHHHHHHHHHhhH-HHHHh------hCCCCCHhHHHHHHhcccCCHHHHHHHHHHHH
Q 013459 137 YFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHN-EWIES------VKPALDPDISAEIGEMLEISETVIENCKSIRN 209 (442)
Q Consensus 137 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~ 209 (442)
.+|.+.. ....+..+...+....+. ..... ....+.+.+..++..+..++..+|.++++.|+
T Consensus 310 ----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~ 378 (490)
T PRK06170 310 ----LLPDLAE-------SARLYMRLLFAASAARFPPDAYADAQARAAGLSADDRSLAAERLRGAVLSHRDWLFADAARE 378 (490)
T ss_pred ----CCCchHH-------HHHHHHHHHHHHHhhccchhHHHHhhhccccccchhHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 1122211 112222222222222111 11111 12235666777777788889999999999999
Q ss_pred HHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCc--------c-cHHHHHHHhhhhccccccccceeeecCccC-CCCcee
Q 013459 210 EMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM--------L-SEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTS 279 (442)
Q Consensus 210 ~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~--------~-~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g 279 (442)
.+++.|.++|+++|+||+||++.+||+++.... . ........+.||.++|++|+|+++||+|.. +|+|+|
T Consensus 379 ~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvG 458 (490)
T PRK06170 379 ELRAAWRRFFAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYWDQLVWAGLATLPGLPATAIPIGLSATGLPVG 458 (490)
T ss_pred HHHHHHHHHHhcCCEEEeCCCCCCCCCCCccccccccccccCCcccchhhhhhhcceecccCCCeEEEECCcCCCCCcee
Confidence 999999999999999999999999998864210 0 000111224689999999999999999987 899999
Q ss_pred EEEecccCCcHHHHHHHHHHHHH
Q 013459 280 VSFIARHGGDRFLLDTVQNMYAS 302 (442)
Q Consensus 280 ~~~~~~~~~d~~ll~~~~~~~~~ 302 (442)
+|+++++++|..+++++..+++.
T Consensus 459 lQlig~~~~D~~LL~~a~~lE~~ 481 (490)
T PRK06170 459 VQIVGPALEDRTPLRLAELLEEE 481 (490)
T ss_pred EEEecCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999875
No 20
>PRK12470 amidase; Provisional
Probab=100.00 E-value=7.8e-53 Score=401.87 Aligned_cols=284 Identities=21% Similarity=0.249 Sum_probs=214.8
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||+|||+|++++|+|||||||||+|||||||||||||+||||..|++|+++++|++||||||++|++.++++
T Consensus 151 ~~GGSSgGsAaAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~ld~~Gp~ar~v~D~a~~~~v 230 (462)
T PRK12470 151 TPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDA 230 (462)
T ss_pred CCCcchhHHHHHHHcCCCceEEecCCCCchhhchhhhCceeecCCCCCcCCCCCCCcccCccccCCeeCCHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc---------CCCCceEEEcccchh-hcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchhhh
Q 013459 81 LLQLPFAA---------QRSPRQIIIADDCFE-LLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGF 148 (442)
Q Consensus 81 ~~~~~~~~---------~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~~~ 148 (442)
+.+.+..+ ...+.||++..++.. .....++++.++++++++.|+ |+.++ ++. |.+...
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~lrig~~~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~-~~~---------~~~~~~ 300 (462)
T PRK12470 231 TTTVPGPEGEFVAAAAREPGRLRIALSTRVPTPLPVRCGKQELAAVHQAGALLRDLGHDVV-VRD---------PDYPAA 300 (462)
T ss_pred hcCCCCCCcchhhhhccCCCCCEEEEECCccccCCCCCCHHHHHHHHHHHHHHHhCCCEEE-EeC---------CCchhH
Confidence 98543211 124568888755321 112356789999999999997 44431 111 111000
Q ss_pred hccchhHHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEee
Q 013459 149 HKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTP 228 (442)
Q Consensus 149 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~P 228 (442)
....+.... ....... .....+...+.+.++.++..+..++..+|.....++..+++.|.++|+++|+||+|
T Consensus 301 ------~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~P 372 (462)
T PRK12470 301 ------TYANYLPRF-FRGISDD-ADAQAHPDRLEARTRAIARLGSFFSDRRMAALRAAEVVLSARIQSIFDDVDVVVTP 372 (462)
T ss_pred ------HHHHHHHHH-HHHHHHh-hccccChhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCC
Confidence 000010000 0000000 11122345688889999998988888888755555669999999999999999999
Q ss_pred CCCCCCCCCCCCCc-c-cHH--HHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHHHHHHHHHHHH
Q 013459 229 TTAYPPPKLGGKEM-L-SED--YQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS 302 (442)
Q Consensus 229 t~~~~a~~~~~~~~-~-~~~--~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~ll~~~~~~~~~ 302 (442)
|+|.+||+++.... . ... ....+..||.++|++|+|+++||+|.. +|+|+|+|+++++++|..+++++..+++.
T Consensus 373 t~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlqlvg~~~~D~~LL~~A~~le~~ 451 (462)
T PRK12470 373 GTATGPSRIGAYQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESA 451 (462)
T ss_pred CCCCCCCCCCccCCCcchhhhhhhhhccCcCccchhcCCCeEEEecCcCCCCCceEEEEECCCCcHHHHHHHHHHHHcc
Confidence 99999998864321 1 111 112344589999999999999999987 89999999999999999999999998764
No 21
>PRK07139 amidase; Provisional
Probab=100.00 E-value=9.5e-53 Score=398.23 Aligned_cols=282 Identities=25% Similarity=0.373 Sum_probs=211.7
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+||||||||||+||++ +++|+|||||||||+|||||||||||||+|+||+.|++|+++++|++||||||++|++.++++
T Consensus 116 ~pGGSSgGSAAaVAag-~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~~~v 194 (439)
T PRK07139 116 LVGGSSSGSAATFNKN-ISFAIGSDTGDSVRLPASFIGKVGFKPSYGAISRYGLFAYASSLDTVAYFTHNVNDAIILSKV 194 (439)
T ss_pred CCCCCchHHHHHHHCC-CCEEEEcCCCcchhhhHHHcCeEEEeCCCCCcCCCCcccCcccCCccccccCCHHHHHHHHHH
Confidence 5999999999999997 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcccC------------CCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchh
Q 013459 81 LLQLPFAAQ------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLK 146 (442)
Q Consensus 81 ~~~~~~~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~ 146 (442)
+.+.+..++ ..+.||++...+ ...++++.++++++++.|+ |+.+ ++++++.. .+.
T Consensus 195 l~g~d~~d~~~~~~~~~~~~~~~~lrig~~~~~----~~~~~~v~~a~~~a~~~L~~~G~~v-~~~~~~~~------~~~ 263 (439)
T PRK07139 195 LFGKDENDLTSVDVKINNVKKTKPKKVAYLDCF----KELEEYVAKKYKKLINILKSENIEV-EKIKIDEK------LLK 263 (439)
T ss_pred HcCCCcCCccccccCcccccccCCCEEEEECcc----ccCCHHHHHHHHHHHHHHHHCCCEE-EEeCCChh------HHH
Confidence 987543221 245678875322 2246789999999999987 4443 22222110 000
Q ss_pred hhhccchhHHHHHHHHHHHHHHH-----------------hhHHHH-HhhCCCCCHhHHHHHHhcccCCH-----HHHHH
Q 013459 147 GFHKTNGELKNVMRLIQRYEFKN-----------------NHNEWI-ESVKPALDPDISAEIGEMLEISE-----TVIEN 203 (442)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~e~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 203 (442)
. ....+..+...+... .+..+. ......+++.+..++..+..++. .+|.+
T Consensus 264 ~-------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (439)
T PRK07139 264 A-------IKPVYKIISYSEASSNLANLNGIAFGNREKGSSWEEIMINTRSEGFGKMVQKRLILGSYFLEEENQEKYFLK 336 (439)
T ss_pred H-------HHHHHHHHHHHHHHHHHHhhcccccccccccccHHHHHHhcchhccCHHHHHHHHcccccccccccHHHHHH
Confidence 0 000111111111111 112222 22334588888888887765543 35889
Q ss_pred HHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccCCCCceeEEEe
Q 013459 204 CKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFI 283 (442)
Q Consensus 204 a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~ 283 (442)
+++.|+.+++.|.++|+++|+||+||++.+||+++........+ ..+ +|.++|++|+|+++||+|..+|+|+|+|++
T Consensus 337 a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~ap~~~~~~~~~~~~-~~~--~t~~~nl~G~PaisvP~g~~~glPiGlqiv 413 (439)
T PRK07139 337 AKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENKSDNY-MDY--ILTISNLVGNPSLSIPLGKYNNLPFNLAID 413 (439)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhh-hhh--cccCcccCCCCeEEEeCCCCCCCCeEEEEE
Confidence 99999999999999999999999999999999886531111112 111 367899999999999999558999999999
Q ss_pred cccCCcHHHHHHHHHHHHHHH
Q 013459 284 ARHGGDRFLLDTVQNMYASLQ 304 (442)
Q Consensus 284 ~~~~~d~~ll~~~~~~~~~~~ 304 (442)
+++++|..+++++..+|+.++
T Consensus 414 g~~~~D~~LL~~A~~lE~~~~ 434 (439)
T PRK07139 414 SKIYDDEKLLSYSLYIEELIK 434 (439)
T ss_pred CCCCChHHHHHHHHHHHHHhc
Confidence 999999999999999988654
No 22
>PRK07042 amidase; Provisional
Probab=100.00 E-value=1.1e-52 Score=402.08 Aligned_cols=282 Identities=18% Similarity=0.134 Sum_probs=217.7
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+||||||||||+||+|++++|+|||||||||+|||||||||||||+||||..|.. +.|++||||||++|++.++++
T Consensus 151 ~~GGSSgGsAaaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~Grv~~~g~~----~~d~~Gp~arsv~D~a~~l~v 226 (464)
T PRK07042 151 NPGGSSAGAGAAAAAGYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRIPIDPPY----TGRCAGPMTRTVDDAALLMSV 226 (464)
T ss_pred CCCCChHHHHHHHHcCCCceeeecCCCCccccchHhhCceeecCCCCccCCCCCc----cccccCCccCCHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999998853 358999999999999999999
Q ss_pred hhCCCccc----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccC
Q 013459 81 LLQLPFAA----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKV 142 (442)
Q Consensus 81 ~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~ 142 (442)
+.+.+..+ ...+.||++..++.. ....++++.++++++++.|+ |+.++ +++ +
T Consensus 227 l~g~d~~d~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~~v~-~~~--------~ 296 (464)
T PRK07042 227 LSRPDARDGTSLPPQDIDWSDLDIDVRGLRIGLMLDAGC-GLAVDPEVRAAVEAAARRFEAAGAIVE-PVP--------P 296 (464)
T ss_pred hcCCCCCCccccCCCCcChhhhccCcCCCEEEEECcccC-CCCCCHHHHHHHHHHHHHHHHCCCEEE-EeC--------C
Confidence 98654222 123468888755421 12356889999999999997 44432 211 1
Q ss_pred CchhhhhccchhHHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCC
Q 013459 143 PSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDD 222 (442)
Q Consensus 143 p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~ 222 (442)
+.... ....+..+...+....+..+.......+.+.+..++..+..++..+|.++...|..+++.+.++|.++
T Consensus 297 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 369 (464)
T PRK07042 297 FLTRA-------MLDGLDRFWRARLWSDLAALPPERRAKVLPYIRRWAEGGADLSGVEAVRGFNQTFAMRAAAARLFAEF 369 (464)
T ss_pred chhHH-------HHHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11111 11111112222333334444455566788999999988888999999999999999999999999999
Q ss_pred CEEEeeCCCCCCCCCCCCCc-ccHHHHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHHHHHHHHHH
Q 013459 223 GILVTPTTAYPPPKLGGKEM-LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMY 300 (442)
Q Consensus 223 d~li~Pt~~~~a~~~~~~~~-~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~ll~~~~~~~ 300 (442)
|+||+||++.+||+++.... .........+.||.++|++|+|+++||+|.. +|+|+|+|++++++.|..+++++..++
T Consensus 370 D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~lL~~a~~le 449 (464)
T PRK07042 370 DYVLSPVAPVPAFPAEWASPTNDPARPFEHIAFTVPWNMSEQPAASINCGFTRDGLPIGLQIVGPRFDDLGVLRLAKAFE 449 (464)
T ss_pred CEEEcCCCCCCCCCcccccccccchhhhcccccccceeccCCCeEEeecCcCCCCCCeEEEEecCCCcHHHHHHHHHHHH
Confidence 99999999999998863211 1111111234589999999999999999987 799999999999999999999999998
Q ss_pred HHH
Q 013459 301 ASL 303 (442)
Q Consensus 301 ~~~ 303 (442)
+..
T Consensus 450 ~~~ 452 (464)
T PRK07042 450 GWR 452 (464)
T ss_pred Hhc
Confidence 754
No 23
>PRK08137 amidase; Provisional
Probab=100.00 E-value=2.7e-52 Score=402.78 Aligned_cols=276 Identities=25% Similarity=0.282 Sum_probs=211.5
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.++++
T Consensus 158 ~~GGSSgGsAaAVAaG~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~v 237 (497)
T PRK08137 158 SPCGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTA 237 (497)
T ss_pred CCCcCccHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCceeCCCCCCcccccCcccCeeCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc--------------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccc
Q 013459 81 LLQLPFAA--------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYF 138 (442)
Q Consensus 81 ~~~~~~~~--------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~ 138 (442)
+.+.+..+ ...+.||++..++. ..++++.++++++++.|+ |+.+ +++++
T Consensus 238 l~g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~----~~~~~v~~a~~~a~~~L~~~G~~v-~~~~~---- 308 (497)
T PRK08137 238 IAGGDPADPATASAPAPAVDYVAALDADALRGARLGVARNYL----GYHPEVDAQFERALAELKAAGAVV-IDVVD---- 308 (497)
T ss_pred HhCCCCCCcccccCCCCccchhhhccccccCCCEEEEEchhc----cCCHHHHHHHHHHHHHHHHCCCEE-EeccC----
Confidence 98643211 12456788876543 256789999999999997 4444 22222
Q ss_pred cccCCchhhhhccchhHHHHHHHHHHHHHHHhhHHHHHh-----------------------hCCCCCHhHHHHHHhccc
Q 013459 139 DSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES-----------------------VKPALDPDISAEIGEMLE 195 (442)
Q Consensus 139 ~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~ 195 (442)
|.+.. +...+..+...|....+..++.. ....+++.+..++..+..
T Consensus 309 ----~~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (497)
T PRK08137 309 ----LDDGD-------WGEAEKVVLLHEFKAGLNAYLRSTAPHAPVRTLADLIAFNRAQHAREMPYFGQELFEQAQAAPG 377 (497)
T ss_pred ----Cchhh-------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhccchhhhcccCHHHHHHHHccCC
Confidence 21111 11112222223332222222211 124567888888888888
Q ss_pred CCHHHHHHHHHHHHHH--HHHHHhhcc--CCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCc
Q 013459 196 ISETVIENCKSIRNEM--RSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLG 271 (442)
Q Consensus 196 ~~~~~~~~a~~~r~~~--~~~~~~~~~--~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~ 271 (442)
++..+|.++++.++.+ ++.|.++|+ ++|+||+||++ ++|+++.... ..+ ...+|.++|++|+|+++||+|
T Consensus 378 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~-~ap~~~~~~~--~~~---~~~~t~~~nl~G~PaisvP~g 451 (497)
T PRK08137 378 LDDPAYLDALADAKRLAGPEGIDAALKEHRLDALVAPTTG-PAWLIDLING--DSF---GGSSSTPAAVAGYPHLTVPMG 451 (497)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCC-CCcccccccc--ccc---ccccccccHhhCCCeEEEeCC
Confidence 8999999988755554 478999997 68999999998 8888754211 111 113678999999999999999
Q ss_pred cCCCCceeEEEecccCCcHHHHHHHHHHHHH
Q 013459 272 YYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 302 (442)
Q Consensus 272 ~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~~ 302 (442)
..+|+|+|+|+++++++|..+++++..+|+.
T Consensus 452 ~~~GlPvGvQlig~~~~d~~LL~~a~~lE~~ 482 (497)
T PRK08137 452 QVQGLPVGLSFIGAAWSEARLLELGYAYEQA 482 (497)
T ss_pred CCCCcCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999875
No 24
>PRK06529 amidase; Provisional
Probab=100.00 E-value=7.5e-52 Score=398.22 Aligned_cols=286 Identities=19% Similarity=0.230 Sum_probs=214.5
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCccc-ccccCCHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTV-GWFARDPKILRHVGH 79 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~-Gp~ar~~~d~~~~~~ 79 (442)
+||||||||||+||+|++++|+|||||||||+||+||||||||||+||||..++.+.+++.|++ ||||||++|++.+++
T Consensus 143 ~~GGSSgGsAaaVAaG~~~~aiGtDtgGSIRiPAa~cGvvGlKPT~Grvp~~~~~~~~~~~~~~~Gpiarsv~D~a~~l~ 222 (482)
T PRK06529 143 NAGGSSGGAAALVSSGIVALAAASDGGGSIRIPASFNGLIGLKPSRGRIPVGPGSYRGWQGASVHFALTKSVRDTRRLLY 222 (482)
T ss_pred CCCcCcHHHHHHHHcCCCceeeecCCCCCeecChHhhCceeEccCCCccCCCCCCccccccccccCCccCcHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999987776666777776 799999999999999
Q ss_pred HhhCCCcccC---------------CCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccC
Q 013459 80 VLLQLPFAAQ---------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKV 142 (442)
Q Consensus 80 ~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~ 142 (442)
++.+.+..++ ..+.||++..+... ....++++.++++++++.|+ |+.++ +++. .
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~lrIg~~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~~v~-ev~~-------~ 293 (482)
T PRK06529 223 YLQMYQMESPFPLATLSKESLFQSLQRPLKIAFYQRSPD-GSPVSLDAAKALKQAVTFLREQGHEVV-ELEE-------F 293 (482)
T ss_pred HhhCCCCCCCcccCCcccchhccccCCCCEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHhCCCEEE-EcCC-------C
Confidence 9976432110 23467887754321 12356889999999999997 44442 2110 1
Q ss_pred C-chhhhhccchhHHHHHHHHHHHHHHHhhHHHHHhh-----CCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Q 013459 143 P-SLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESV-----KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAIS 216 (442)
Q Consensus 143 p-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~ 216 (442)
| .+.. ....+..+...+....+..+.... ...+.+..+..+..+..++..+|.++.+.|+.+++.|.
T Consensus 294 p~~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~ 366 (482)
T PRK06529 294 PLDMTE-------VMRSYYIMNSVETAAMFDDIEDALGRPMTKDDMETMTWAIYQSGQDIPAKRYSQVLQKWDTYSATMA 366 (482)
T ss_pred CCCHHH-------HHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhcCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 2 1111 112223333334433333332111 12356666666777778899999999999999999999
Q ss_pred hhccCCCEEEeeCCCCCCCCCCCCCccc----------------------HHH--HHHHhhhhccccccccceeeecCcc
Q 013459 217 SLLKDDGILVTPTTAYPPPKLGGKEMLS----------------------EDY--QNRAFSLLSIASVSGCCQVTVPLGY 272 (442)
Q Consensus 217 ~~~~~~d~li~Pt~~~~a~~~~~~~~~~----------------------~~~--~~~~~~~t~~~n~~g~p~~~~p~~~ 272 (442)
++|+++|+||+||++.+||+++...... ..+ ...++.||.++|++|+|+++||+|.
T Consensus 367 ~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~ 446 (482)
T PRK06529 367 SFHETYDLLLTFTTNTPAPKHGQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEKSLAITPYTALANLTGQPAISLPTYE 446 (482)
T ss_pred HHHcCCCEEEcCCCCCCCCCCCccCcccchhhhccccccccchhhhhhhhhhhhhhhhcccccccccccCCCeEEeecCc
Confidence 9999999999999999999886421110 011 1123458999999999999999998
Q ss_pred C-CCCceeEEEecccCCcHHHHHHHHHHHHH
Q 013459 273 Y-DKCPTSVSFIARHGGDRFLLDTVQNMYAS 302 (442)
Q Consensus 273 ~-~~lp~g~~~~~~~~~d~~ll~~~~~~~~~ 302 (442)
. +|+|+|+|+++++++|..+++++..+++.
T Consensus 447 ~~~GlPvGlQlvg~~~~D~~lL~~a~~le~~ 477 (482)
T PRK06529 447 TKEGLPMGVQLIAAKGREDLLLGIAEQFEAA 477 (482)
T ss_pred CCCCCceeEEEecCCCcHHHHHHHHHHHHhc
Confidence 7 89999999999999999999999988763
No 25
>PRK07869 amidase; Provisional
Probab=100.00 E-value=1.7e-50 Score=387.93 Aligned_cols=284 Identities=19% Similarity=0.249 Sum_probs=201.3
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccC-CCCCcccccccCCHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPI-STSLDTVGWFARDPKILRHVGH 79 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~-~~~~d~~Gp~ar~~~d~~~~~~ 79 (442)
+|||||||||||||+|++++|+|||||||||+|||||||||||||+||||..|+.|. ..++|++||||||++|++.+++
T Consensus 153 ~pGGSSgGsAaAVAaG~~~~alGTDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~~d~~Gp~arsv~D~a~l~~ 232 (468)
T PRK07869 153 SAGASSGGSAALVAAGVVPIAHANDGGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVNIVANGVLTRTVRDTAAFYR 232 (468)
T ss_pred CCCCCchHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCcccCCCCcccCccccceecCeeCcHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999998874 4478999999999999999999
Q ss_pred HhhCCCccc-----------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchh
Q 013459 80 VLLQLPFAA-----------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLK 146 (442)
Q Consensus 80 ~~~~~~~~~-----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~ 146 (442)
++.+.+... ...+.||++..+.+. ....++++.++++++++.|+ |+.+ +++++ |...
T Consensus 233 v~~g~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~~v-~~~~~--------~~~~ 302 (468)
T PRK07869 233 EAERYYRNPKLPPIGDVTGPGKQRLRIAVVTDSVT-GREADPEVREAVLATARLLEELGHRV-EPVDL--------PVPA 302 (468)
T ss_pred HHhccCccCCCCchhhhcccCCCCCEEEEECCccC-CCCCCHHHHHHHHHHHHHHHHCCCEE-EEeCC--------CchH
Confidence 997643110 124568887755431 02356889999999999997 4443 22222 2111
Q ss_pred hhhccchhHHHHHHHHHHHHHHHhhHHHHHhhCCCCCHhH-----HHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccC
Q 013459 147 GFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDI-----SAEIGEMLEISETVIENCKSIRNEMRSAISSLLKD 221 (442)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~ 221 (442)
++.. ....+..+............ ....+.+.. ......+.. +..+|.++.+.|+.+++.+.++|++
T Consensus 303 ~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~ 374 (468)
T PRK07869 303 SFVD----DFLLYWGFLAFALVRGGRRT---FGPSFDRTRLDNLTLGLARHARR-NLHRLPLAIARLRRLRRVYARFFGT 374 (468)
T ss_pred HHHH----HHHHHHHHHHHHHHhhhhhh---cccccCHHHhhHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1100 00001101111110000000 111122222 222122222 4456788888999999999999999
Q ss_pred CCEEEeeCCCCCCCCCCCCCcc-c-H---HHHHHHhhhhccccccccceeeecCccC-CCCceeEEEecccCCcHHHHHH
Q 013459 222 DGILVTPTTAYPPPKLGGKEML-S-E---DYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDT 295 (442)
Q Consensus 222 ~d~li~Pt~~~~a~~~~~~~~~-~-~---~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~~~~~~~d~~ll~~ 295 (442)
+|+||+||+|.+||+++..... . . .....+..||.++|++|+|+++||++.. +|+|+|+|+++++++|..++++
T Consensus 375 ~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~lL~~ 454 (468)
T PRK07869 375 YDVVLTPTLAHTTPEIGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLPLGQSSDGLPVGMMFSADVGDEATLLEL 454 (468)
T ss_pred CCEEecCCCCCCCCCCCccCccccchhhhHHHhcccccCccccccCCCceeeecCcCCCCCCeeEEEecCCCchHHHHHH
Confidence 9999999999999988742211 0 1 1111334579999999999999999986 8999999999999999999999
Q ss_pred HHHHHHH
Q 013459 296 VQNMYAS 302 (442)
Q Consensus 296 ~~~~~~~ 302 (442)
+..+++.
T Consensus 455 A~~le~~ 461 (468)
T PRK07869 455 AYELEEA 461 (468)
T ss_pred HHHHHhc
Confidence 9998764
No 26
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=100.00 E-value=4e-51 Score=396.28 Aligned_cols=277 Identities=29% Similarity=0.409 Sum_probs=201.2
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||++||+|++++|||||||||||+||+||||||||||+|+||+.|++|+++++|++||||||++|++.++++
T Consensus 127 ~~GGSS~Gsaaavaag~~~~a~GtDtgGSiR~PAa~~Gv~GlkPT~G~vs~~G~~~~~~~~d~~GpmaRsv~Dl~~~l~v 206 (441)
T PF01425_consen 127 TPGGSSGGSAAAVAAGFVPLAIGTDTGGSIRIPAAFCGVVGLKPTRGRVSRDGVFPLSPSFDTVGPMARSVEDLALLLDV 206 (441)
T ss_dssp E--SSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEE-STTSS--TTB-CSSTTT-EEEEEESSHHHHHHHHHH
T ss_pred cccccccccccccceecccccccccccccccCchhccccceeccccccccccccccccccccccccccCcHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc-------------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHhcccc-cccccccccccc
Q 013459 81 LLQLPFAA-------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQV-LKHENLGEYFDS 140 (442)
Q Consensus 81 ~~~~~~~~-------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~-~~~~~~~~~~~~ 140 (442)
+.+.+..+ ...+.||++..++.. ....++++.++++++++.|+..+. +.+++
T Consensus 207 l~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~lrIGv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~~vv~~~------- 278 (441)
T PF01425_consen 207 LAGPDPWDPDSLPVPPPPPDFDAPLPKSLKGLRIGVPRDDGQ-WVPVDPEVRRAFEEAAEALEAAGAEVVEVD------- 278 (441)
T ss_dssp HBSCBTTBTTSCSTT--SS-CSTTTTSTTTT-EEEEEGGGG--SSTSSHHHHHHHHHHHHHHHHTT-EEEEE--------
T ss_pred hcCCCccCCCccccccccccccccccccccCccccccccccc-cccccHHHHHHHHHHHHhhccccccccccc-------
Confidence 98654221 224568888877541 124678899999999999973332 12222
Q ss_pred cCCchhhhhccchhHHHHHHHHHHHHHHHh------hHHHH-HhhCCCCCHhHHHHHHhcccCC-----HHHHHHHHHHH
Q 013459 141 KVPSLKGFHKTNGELKNVMRLIQRYEFKNN------HNEWI-ESVKPALDPDISAEIGEMLEIS-----ETVIENCKSIR 208 (442)
Q Consensus 141 ~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~~r 208 (442)
+|.+... ...+..+...++... +..++ ......+.+.+..++..+...+ ...|.++++.|
T Consensus 279 -~p~~~~~-------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r 350 (441)
T PF01425_consen 279 -LPDLDEA-------MDAYYRIFVSEGAANLARYKDFARLLAKWRDPPLSPIVRSRLEQGAAISSAEDDSEYYLQAQRRR 350 (441)
T ss_dssp --TTGGHH-------HHHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHSHHHHHHHHHHHHHHHCTTTTTTHHHHHHHHH
T ss_pred -CchHHHH-------HHHHhhhHHHHHHHHHhhhhHHHHhhhcccccccccchhhhhhhhhhhhhccccHHHHHHHHHHH
Confidence 2332221 122233333333322 12222 2233446666666666554322 23389999999
Q ss_pred HHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcc--cHH---HHHHHhhhhccccccccceeeecCccC-CCCceeEEE
Q 013459 209 NEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML--SED---YQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSF 282 (442)
Q Consensus 209 ~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~--~~~---~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~~~ 282 (442)
..+++.+.++|+++|+||+|+++.+||.++..... ... .......+|.++|++|+|++++|++.. +|+|+|+|+
T Consensus 351 ~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~g~PaisvP~g~~~~GlPvGvql 430 (441)
T PF01425_consen 351 ARLRRRFDELFEEYDALLTPTTPVPAPPIGEPSPLGPDYTALWNLLDFTAYTSPANLAGLPAISVPVGFDPDGLPVGVQL 430 (441)
T ss_dssp HHHHHHHHHHHHHSSEEEEESSSSS-BBTTTTCCCTSCHHHHHHHHTTTTTTHHHHHHTHHEEEEEEEEETTTEEEEEEE
T ss_pred HHHHHHHHHHHhhcceecccCCCcCCCccccccccccchhhhhhhhhhhccccccccccCcceeeecCCCCCCcCEeEEE
Confidence 99999999999999999999999999999876431 111 122344567999999999999999997 899999999
Q ss_pred ecccCCcHHHH
Q 013459 283 IARHGGDRFLL 293 (442)
Q Consensus 283 ~~~~~~d~~ll 293 (442)
++++++|+.++
T Consensus 431 vg~~~~D~~LL 441 (441)
T PF01425_consen 431 VGRPGSDEKLL 441 (441)
T ss_dssp EESTTBHHHHH
T ss_pred ECCCCCccCcC
Confidence 99999998875
No 27
>PRK06828 amidase; Provisional
Probab=100.00 E-value=2.1e-49 Score=378.11 Aligned_cols=262 Identities=20% Similarity=0.239 Sum_probs=198.5
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||++||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||+++|++.++++
T Consensus 168 ~pGGSSgGsAaaVAag~~~~aiGtDtgGSiRiPAa~cGvvGlKPT~G~vs~~G~~p~~~s~d~~Gp~arsv~D~a~~~~~ 247 (491)
T PRK06828 168 FVGGSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGS 247 (491)
T ss_pred CCCcCchHHHHHHHcCCCceEeecCCCCccccchhhcCceeecCCCCCccCCCCCCCccCCCeeccccCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc---------------------CCCCceEEEccc-chhhcCCchhHHHHHHHHHHHHHh--cccccccccccc
Q 013459 81 LLQLPFAA---------------------QRSPRQIIIADD-CFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGE 136 (442)
Q Consensus 81 ~~~~~~~~---------------------~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~ 136 (442)
+.+.+..+ ...+.||++..+ +.... ..++++.++++++++.|+ |+.+++.+.++
T Consensus 248 l~g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~~~~~p- 325 (491)
T PRK06828 248 LTGVDEKDVVTHKSEGIAEHDYTKYLDANGLNGAKIGVYNNAPKEYY-ESGEYDEKLFKETIEVLRSEGATVVEDIDIP- 325 (491)
T ss_pred HhCCCccCccccccCcCCCCchhhhhccccCCCCEEEEEcCcccccc-CCCHHHHHHHHHHHHHHHhcCCEEEecccCc-
Confidence 98643211 134567887432 11111 256789999999999997 55443223222
Q ss_pred cccccCCchhhhhccchhHHHHHHHHHHHHHHHhhHHHH----------------------HhhCCCCCHhHHH-HHHhc
Q 013459 137 YFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWI----------------------ESVKPALDPDISA-EIGEM 193 (442)
Q Consensus 137 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~----------------------~~~~~~~~~~~~~-~~~~~ 193 (442)
.+... . ...+...|+...+..++ ..+...+++.... .+..+
T Consensus 326 -------~~~~~-------~--~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 389 (491)
T PRK06828 326 -------SFHRE-------W--SWGVLLYELKHSLDNYLSKLPSTIPVHSISELMEFNENIAERALKYGQTKLERRKDFP 389 (491)
T ss_pred -------cchhH-------H--HHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhhchhhhhccCHHHHHHHHhcC
Confidence 11110 0 00111122222222221 1222356665444 45567
Q ss_pred ccCCHHHHHHHHHHHHHHH--HHHHhhccC--CCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeec
Q 013459 194 LEISETVIENCKSIRNEMR--SAISSLLKD--DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVP 269 (442)
Q Consensus 194 ~~~~~~~~~~a~~~r~~~~--~~~~~~~~~--~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p 269 (442)
..++..+|.++++.|..+. +.++++|++ +|+||+||++.. .++|++|+|+++||
T Consensus 390 ~~~~~~~y~~a~~~r~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~----------------------~~~~~~GlPaisvP 447 (491)
T PRK06828 390 NTLRNPEYLNARLEDIYFSQEQGIDFALEKYNLDAILFPSYIGS----------------------TICAKAGYPSIAIP 447 (491)
T ss_pred CCCChHHHHHHHHHHHHhhhHHHHHHHHHhcCCCEEEeCCCCcc----------------------cchhhcCCCeEEee
Confidence 7788899999998888754 699999984 899999999764 23468999999999
Q ss_pred CccC-CCCceeEEEecccCCcHHHHHHHHHHHHH
Q 013459 270 LGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS 302 (442)
Q Consensus 270 ~~~~-~~lp~g~~~~~~~~~d~~ll~~~~~~~~~ 302 (442)
+|.. +|+|+|+|+++++++|..+++++..+|+.
T Consensus 448 ~G~~~~GlPvGlQlig~~~~D~~LL~~A~a~E~~ 481 (491)
T PRK06828 448 AGYMEGGRPFGITLASTAFSEGTLIKLAYAFEQA 481 (491)
T ss_pred cCCCCCCcCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 9986 89999999999999999999999998875
No 28
>PRK11910 amidase; Provisional
Probab=100.00 E-value=9.6e-48 Score=366.64 Aligned_cols=261 Identities=21% Similarity=0.332 Sum_probs=192.7
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||+|||+|++++|+|||||||||+||++|||||||||+|+||+.|++|+++++|++|||||||+|++.++++
T Consensus 314 ~pGGSSsGSAAAVAaG~a~~AiGTDTgGSIR~PAa~cGvVGlKPT~G~vSr~GviPls~slDtvGPmaRsV~D~a~ll~v 393 (615)
T PRK11910 314 DPSGSSSGSATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNA 393 (615)
T ss_pred CCCCCCchHHHHHhcCCceEEeecCCCCccccchHHcCceeEecCCCCCCCCCCcCCcCCCCeeccccCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc-----CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchhhhhccch
Q 013459 81 LLQLPFAA-----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNG 153 (442)
Q Consensus 81 ~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 153 (442)
|.+.+..+ ...+.||+++.+. .++++.++++++++.|+ |+.+++...+ |.+..
T Consensus 394 i~g~~~~~~l~~~~lkglRIGv~~~~------~~~~v~~a~~~a~~~L~~~Ga~Vve~~~~--------p~~~~------ 453 (615)
T PRK11910 394 LTNTTSNPPLSTDALKGKRIGLLADG------ESNEETAVIKKIKLDLQKAGATIIEGIAV--------GEFEQ------ 453 (615)
T ss_pred hcCCCCcCccCcccCCCCEEEEECCC------CCHHHHHHHHHHHHHHHHCCCEEEeCCCC--------ccHHH------
Confidence 98654321 2456788886431 23567788888888886 5544322222 22211
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHhhCCC--------------------CCHhHHHHHHhcc-cCCHHHH-HHHHHHHHHH
Q 013459 154 ELKNVMRLIQRYEFKNNHNEWIESVKPA--------------------LDPDISAEIGEML-EISETVI-ENCKSIRNEM 211 (442)
Q Consensus 154 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~-~~~~~~~-~~a~~~r~~~ 211 (442)
....+..++..|+...+..|+...... +++. ..+..+. ..+..++ ..+++.|+.+
T Consensus 454 -~~~~~~~l~~~E~~~~l~~yl~~~~~~v~sL~dl~~fn~~~~~~~~~~gq~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (615)
T PRK11910 454 -KDTDYASLLNADFKHDLNQFLQVNHSPMSTLESIIQFNQTNPTRNMKYGQS--ELVKSQQSTITKQQADNLASNLIQSS 530 (615)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhcCcccccCcCHH--HHHhhhccCCCHHHHHHHHHHHHHHH
Confidence 222344455567777777766432221 2222 1111111 1343332 3356677788
Q ss_pred HHHHHhhcc--CCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccC--CCCceeEEEecccC
Q 013459 212 RSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY--DKCPTSVSFIARHG 287 (442)
Q Consensus 212 ~~~~~~~~~--~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~--~~lp~g~~~~~~~~ 287 (442)
++.++.+|+ ++|+||+|+.... .....+++|+|+++||+|.. +|+|+|+||+++++
T Consensus 531 ~~~l~~~~~~~~lDalv~P~~~~~--------------------~~~~~~~aG~PaItVP~G~~~~~GlPvGlqliG~~~ 590 (615)
T PRK11910 531 QNELDSVLQKDKLDAVVTIGMGGS--------------------VMFLAPIAGNPELTIPAGYDEESNQPISLTFITARN 590 (615)
T ss_pred HHHHHHHHHHCCCcEEEeCCCCCc--------------------chhhhhhcCCCeEEecccCCCCCCcCeEEEEECCCC
Confidence 888999996 7999999974211 01123489999999999976 49999999999999
Q ss_pred CcHHHHHHHHHHHHHHH
Q 013459 288 GDRFLLDTVQNMYASLQ 304 (442)
Q Consensus 288 ~d~~ll~~~~~~~~~~~ 304 (442)
.|..+++++..+|+..+
T Consensus 591 sE~~LL~~A~a~Eq~t~ 607 (615)
T PRK11910 591 SDKILLNMGYAYEQQSK 607 (615)
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 99999999999988644
No 29
>PRK06707 amidase; Provisional
Probab=100.00 E-value=5.3e-47 Score=363.17 Aligned_cols=258 Identities=24% Similarity=0.321 Sum_probs=192.4
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||+|||+|++++|||||||||||+||++|||||||||+|+||+.|++|+++++|++|||+|||+|++.++++
T Consensus 223 ~pGGSSsGSAaAVAag~~~~aiGtDtgGSIr~PAs~~GvvGlKPT~G~vs~~Gv~p~s~slDt~Gp~artV~D~a~~l~~ 302 (536)
T PRK06707 223 DTSGSSSGSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLFNA 302 (536)
T ss_pred CCCCCCchHHHHHhCCCCceEEecCCCCcccccHHHcCeEEEeCCCCcccCCCCcCcccccCeecCeeCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc---------------------CCCCceEEEcccchhhcCCchhHHHHH-HHHHHHHHh--cccccccccccc
Q 013459 81 LLQLPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQV-VIKSTEKLF--GRQVLKHENLGE 136 (442)
Q Consensus 81 ~~~~~~~~---------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~a~~~l~--g~~~~~~~~~~~ 136 (442)
|.+.+..+ ...++||++..+.. ..+++.++ ++++++.|+ |+.+++.+.+
T Consensus 303 ~~g~d~~d~~~~~~~~~~~~~~~~~l~~~~l~~~rigv~~~~~-----~~~~~~~a~~~~a~~~L~~~Ga~iv~~~~l-- 375 (536)
T PRK06707 303 MIGYDEKDVMTEKVKDKERIDYTKDLSIDGLKGKKIGLLFSVD-----QQDENRKAVAEKIRKDLQDAGAILTDYIQL-- 375 (536)
T ss_pred HcCCCCCccccccccccCCcchhhhccccCCCCCEEEEECCcC-----CCHHHHHHHHHHHHHHHHHcCCEEEeccCC--
Confidence 98644221 13557888765431 23556666 577777776 5555321222
Q ss_pred cccccCCchhhhhccchhHHHHHHHHHHHHHHHhhHHHHHhhCCC----------C-CHhHHHHHHhcccC---------
Q 013459 137 YFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPA----------L-DPDISAEIGEMLEI--------- 196 (442)
Q Consensus 137 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~--------- 196 (442)
|... . . ...+...|+..++..|+...... + .+....++..+...
T Consensus 376 ------~~~~--------~-~-~~~~~~~e~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 439 (536)
T PRK06707 376 ------NNGG--------V-D-NLQTLEYEFKHNVNDYFSQQKNVPVKSLEEIIAFNKKDSKRRIKYGQTLIEASEKSAI 439 (536)
T ss_pred ------chhh--------H-H-HHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHhcCHHHHHHHHccchhhhhhhhccc
Confidence 2100 0 1 11233456666665554322100 1 24445555444322
Q ss_pred CHHHH-HHHHHHHHHHHHHHHhhcc--CCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccC
Q 013459 197 SETVI-ENCKSIRNEMRSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY 273 (442)
Q Consensus 197 ~~~~~-~~a~~~r~~~~~~~~~~~~--~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~ 273 (442)
+.++| ..+.+.|+.+++.++++|+ ++|+||+|... .+.++|++|+|+++||+|..
T Consensus 440 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~Dall~p~~~----------------------~t~~an~aG~PaitvP~G~~ 497 (536)
T PRK06707 440 TKDEFEKVVQTSQENAKKELDRYLVEKGLDALVMINNE----------------------EVLLSAVAGYPELAVPAGYD 497 (536)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEecCCC----------------------cchhhHhcCCCeEEEecccC
Confidence 12233 3566778888999999998 89999998320 15678999999999999987
Q ss_pred -CCCceeEEEecccCCcHHHHHHHHHHHHHH
Q 013459 274 -DKCPTSVSFIARHGGDRFLLDTVQNMYASL 303 (442)
Q Consensus 274 -~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~ 303 (442)
+|+|+|+||+++++.|..++.++..+|+..
T Consensus 498 ~~GlP~Glqlig~~~~e~~LL~~A~~~E~~~ 528 (536)
T PRK06707 498 NNGEPVGAVFVGKQFGEKELFNIGYAYEQQS 528 (536)
T ss_pred CCCCCeEEEEECCCCChHHHHHHHHHHHHhC
Confidence 899999999999999999999999988754
No 30
>PRK06565 amidase; Validated
Probab=100.00 E-value=5.9e-45 Score=345.06 Aligned_cols=299 Identities=19% Similarity=0.174 Sum_probs=193.5
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||++||+|+++||+|||||||||+||++|||||||||+|+||+.|++|+++++|++|||+||++|++.++++
T Consensus 158 ~pGGSSgGsAaAVAag~~~~alGtDtgGSIR~PAa~~GivG~KPT~G~vs~~Gv~p~~~s~D~vGp~aRsV~D~a~~l~v 237 (566)
T PRK06565 158 FASGSSNGAGTATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMADLLEVLDV 237 (566)
T ss_pred CCCCCCccHHHHHhCCCCcceeecCCCCchhhhHHHcCeeEEeCCCCccCCCCcccccCCCCeecceeCCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc--------------------------------CCCCceEEEcccchhhcC------------------Cchh
Q 013459 81 LLQLPFAA--------------------------------QRSPRQIIIADDCFELLK------------------IPAD 110 (442)
Q Consensus 81 ~~~~~~~~--------------------------------~~~~~~i~~~~~~~~~~~------------------~~~~ 110 (442)
|.+.+..+ ...++||+++..++.... ...+
T Consensus 238 l~g~D~~d~~~~~~~~~~~~~p~~~~~~~~~y~~~~~~~~~l~g~RIGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (566)
T PRK06565 238 IVADDPDTRGDLWRLQPWVPIPKASEVRPASYLALAAGADALKGKRFGVPRMYINADPDAGTSENPGIGGPTGQRIHTRP 317 (566)
T ss_pred hcCCCcccccchhhccccccCccccccCccchhhhhccccCCCCCEEEEEChhhccccccccccccccccccccccCCCH
Confidence 98643211 124578888765542110 1246
Q ss_pred HHHHHHHHHHHHHh--ccccccccccccc--ccccCC---chhhhhccchhHHHHHHHHHHHH-HHHhhHHHHHhhCC--
Q 013459 111 RVVQVVIKSTEKLF--GRQVLKHENLGEY--FDSKVP---SLKGFHKTNGELKNVMRLIQRYE-FKNNHNEWIESVKP-- 180 (442)
Q Consensus 111 ~~~~~~~~a~~~l~--g~~~~~~~~~~~~--~~~~~p---~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~-- 180 (442)
++.+.++++++.|+ |+.++ +++++.+ ++...+ .+.+......++ ....... ....++.|+....+
T Consensus 318 ~v~~~~~~a~~~L~~~Ga~vv-~v~~p~~~~~e~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~~~~~~yL~~~~~~~ 392 (566)
T PRK06565 318 SVIDLWEAARRALEAAGAEVI-EVDFPLVSNCEGDRPGAPTVFNRGLVSPEF----LHDELWELSGWAFDDFLRANGDPK 392 (566)
T ss_pred HHHHHHHHHHHHHHHCCCEEE-EeecCCccccccccccccccccccccchhh----hhccccchhHHHHHHHHHhcCCCC
Confidence 78999999999997 55543 3444321 111000 000000000000 0000000 00112233322210
Q ss_pred -----------------CCCHh----HHHH---HHh----c-cc-CCHHHHHHHHHHHHHHHH-HHHhhcc--CCCEEEe
Q 013459 181 -----------------ALDPD----ISAE---IGE----M-LE-ISETVIENCKSIRNEMRS-AISSLLK--DDGILVT 227 (442)
Q Consensus 181 -----------------~~~~~----~~~~---~~~----~-~~-~~~~~~~~a~~~r~~~~~-~~~~~~~--~~d~li~ 227 (442)
..-|. .... +.. + .. .....|.+.++.++..++ .+++.|+ +.|+||+
T Consensus 393 ~~sl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~lDalv~ 472 (566)
T PRK06565 393 LNRLADVDGPQIFPHDPGTLPNREGDLAAGMDEYVNMAKRGLKSWDQIPTLPDGLRGLEKTRKLDLEDWMDGLGLDAVLF 472 (566)
T ss_pred CCCHHHhhhhhcccCcccccccchhhhhhhHHHHHHHhhcCCCChhhccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 00010 0000 000 1 11 112334555555555554 5666665 5689999
Q ss_pred eCCCCCCCCCCCCCcccHHHHHHH---hhh-hccccccccceeeecCccC--CCCceeEEEecccCCcHHHHHHHHHHHH
Q 013459 228 PTTAYPPPKLGGKEMLSEDYQNRA---FSL-LSIASVSGCCQVTVPLGYY--DKCPTSVSFIARHGGDRFLLDTVQNMYA 301 (442)
Q Consensus 228 Pt~~~~a~~~~~~~~~~~~~~~~~---~~~-t~~~n~~g~p~~~~p~~~~--~~lp~g~~~~~~~~~d~~ll~~~~~~~~ 301 (442)
|+.+..+|...+..........+. ... ....+++|+|+|+||+|.. .|||+|++|+++.++|..++.++..+|+
T Consensus 473 P~~~~~~~~~~~~~~~~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~~~~~G~PvGl~~~G~a~~e~~Ll~~A~a~E~ 552 (566)
T PRK06565 473 PTVADVGPADADVNPASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDDNALLRFAAAFEA 552 (566)
T ss_pred CCCCCCccccccccchhhhhccccCcccccchhhHHhcCCCeeEeeccccCCCCCCeeEEeecCCcchHHHHHHHHHHHH
Confidence 999999887765433322121111 111 2344889999999999987 6999999999999999999999999998
Q ss_pred HHH
Q 013459 302 SLQ 304 (442)
Q Consensus 302 ~~~ 304 (442)
..+
T Consensus 553 ~~~ 555 (566)
T PRK06565 553 TGS 555 (566)
T ss_pred Hhc
Confidence 654
No 31
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-43 Score=325.57 Aligned_cols=291 Identities=27% Similarity=0.333 Sum_probs=198.8
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||+|||+++++||+|||||||+|+||++|||+|||||+|++|+.|++|++.++|++||+||++.|+..++++
T Consensus 162 v~GGSS~GSA~aVaa~l~~~alGtDTgGSvR~PAa~~gvvG~KPT~G~~Sr~Gvip~~~SlD~vGi~a~tv~D~~~v~~~ 241 (506)
T KOG1211|consen 162 VPGGSSSGSAAAVAAGLCDFALGTDTGGSVRVPAAYCGVVGFKPTYGRVSRFGVIPLSNSLDTVGIFARTVYDAVEVLGA 241 (506)
T ss_pred cCCCCcchhHHHHHhccchhhccccCCCCccCcHHhcCccccccCcceecccccchhhhcccccchhhcccchhHHHhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc--------------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccc
Q 013459 81 LLQLPFAA--------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYF 138 (442)
Q Consensus 81 ~~~~~~~~--------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~ 138 (442)
+.+.+..+ ...+.|++|+..+.... ....+.+.+++..++|. |..+ .+..++...
T Consensus 242 ~~g~d~~d~~t~~~p~~~~~~~~~~~~~~l~~~r~GIp~~~~~~~--~~~~v~~~~~~~~~~l~~~~~~~-~~~~lp~~~ 318 (506)
T KOG1211|consen 242 IVGIDELDSTTLAQPAPFPIVLELIGSMDLSGLRIGIPKERLVQG--LSSGVLSLWEELADLLGSLGAKV-NEVSLPTTI 318 (506)
T ss_pred hcCCCccCcccccCCcccccchhhcccccccccccCceeeccccc--ccHHHHHHHHHHHHHhhcccccc-eeeecchhh
Confidence 87654322 23456778877765433 23678888888777775 3332 333333221
Q ss_pred cccCCchhhhhccchhHHHHHHHHHHHHHHHh---------hHHHHHh-hCCCCCHhHHHHHHhcc-----cCCHHHHHH
Q 013459 139 DSKVPSLKGFHKTNGELKNVMRLIQRYEFKNN---------HNEWIES-VKPALDPDISAEIGEML-----EISETVIEN 203 (442)
Q Consensus 139 ~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 203 (442)
....++- .....++...+.+++.... ..++... +...+..++..++..+. ......+.+
T Consensus 319 ~~~~~~~------~~s~~ea~s~laryd~~~~~~r~~~~~~~~~v~~~~rs~~~n~~v~~~i~~g~~~l~~~~~~~~f~~ 392 (506)
T KOG1211|consen 319 NGLCGYS------LSSASEAASNLARYDGILYGHRRDFKVADEEVYALSRSFGFNFEVKGRILSGNYILAKENDQDYFEK 392 (506)
T ss_pred hcccccc------ccchhhhhhhHHHHHHHHhhcchhhhhccceeeeeccccccchhhcceeeccceehhhhhhHHHHHH
Confidence 1111110 0012233444444433221 1111111 11223334444443321 112233456
Q ss_pred HHHHHHHHHHHHH---hhccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccC-CCCcee
Q 013459 204 CKSIRNEMRSAIS---SLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTS 279 (442)
Q Consensus 204 a~~~r~~~~~~~~---~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g 279 (442)
+++.|+.....+. +.+++.|+|++||.+.+.+..-.. ............+++++|++|+|++++|+|.. +|+|+|
T Consensus 393 a~~~rr~i~~~~~~~~~~~~~vD~l~~pt~~~~~~~~~~~-~~~~~~~~~~~~~~~~anlaGlP~isiP~G~~~~g~P~g 471 (506)
T KOG1211|consen 393 ALEVRRLIQEDFNRRKAALEGVDYLVTPTAPPPLYREFEK-ETLFAVSTLDDIFTQPANLAGLPAISIPVGLKNGGLPIG 471 (506)
T ss_pred HHHHHHHHHHhhhhcccccccCCeeeccCCCCcchhhhhh-cccccccccccceeecccccCCCceEEeeeecCCCCceE
Confidence 7778888877777 678899999999944433322221 11111222334579999999999999999988 899999
Q ss_pred EEEecccCCcHHHHHHHHHHHH
Q 013459 280 VSFIARHGGDRFLLDTVQNMYA 301 (442)
Q Consensus 280 ~~~~~~~~~d~~ll~~~~~~~~ 301 (442)
+|+++..+.|..+..++..+++
T Consensus 472 lqi~g~~~~e~~~~~l~~~~~~ 493 (506)
T KOG1211|consen 472 LQIMGGAFAEPTLIDLALAIGQ 493 (506)
T ss_pred EEeecccccchHHHHHHHhhcc
Confidence 9999999999988888876655
No 32
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-38 Score=293.76 Aligned_cols=281 Identities=21% Similarity=0.249 Sum_probs=183.6
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCC----CCcccccccCCHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPIST----SLDTVGWFARDPKILRH 76 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~----~~d~~Gp~ar~~~d~~~ 76 (442)
+|||||||+||++|+|.++||||||+|||||+||+|||++|+|||.+|+|..|+.|..+ ..-++|||+|+++|+..
T Consensus 199 t~GGSSGGEaALigaggS~lGiGsDigGSiRiPa~f~Gl~GlKPT~~r~~~~G~~~~~~g~~~~~~~~GPm~r~v~dl~~ 278 (560)
T KOG1212|consen 199 TPGGSSGGEAALLGAGGSLLGIGSDIGGSIRIPAAFCGLFGLKPTPGRVSVKGHHPSVPGRETIMLVIGPMTRDVEDLVL 278 (560)
T ss_pred CCCCCchHHHHHHhCCcceeccccccCCceeechhhccccccCCCCCeeeecCcCCCCCcccccccccCcccccHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999887643 44578999999999999
Q ss_pred HHHHhhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--ccccccccccccc
Q 013459 77 VGHVLLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEY 137 (442)
Q Consensus 77 ~~~~~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~ 137 (442)
++..+.+..... ...+.++++..+.. ...+.+.+.+++.+.++.++ |+.++ ...++
T Consensus 279 ~L~~~i~~~~~~~~~p~~~p~~~~~~~y~~~~~~~ig~~~~dg--~~~~~pa~~RAv~~~~~~l~~~g~~~~-~f~~~-- 353 (560)
T KOG1212|consen 279 LLRLMIGDSGPKLLDPYPVPVKFMEVFYKSSDKLVIGYYVDDG--FFDPSPAMQRAVQETIDLLEKAGHEVV-PFDLP-- 353 (560)
T ss_pred HHHHhcCCccccccCCCCCCchhhhhhhhccCCccceEEecCC--CCCcCHHHHHHHHHHHHHHHhcCccee-EecCC--
Confidence 999887643110 12234455542211 12366788888888877775 55542 22222
Q ss_pred ccccCCchhhhhccchhHHHHHHHHHHH------HH--HHhhHHHHHhh--CCCCCHhHHH-----------HHHhcccC
Q 013459 138 FDSKVPSLKGFHKTNGELKNVMRLIQRY------EF--KNNHNEWIESV--KPALDPDISA-----------EIGEMLEI 196 (442)
Q Consensus 138 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~------e~--~~~~~~~~~~~--~~~~~~~~~~-----------~~~~~~~~ 196 (442)
.+.. ..+.+..+... +. ...+....... -..+...... .+....+.
T Consensus 354 ------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~~~~~ 420 (560)
T KOG1212|consen 354 ------DLKH-------VADMFFRVMPDDGDYISEMYLLDIGDPTLNLFVKFVELPKVFLGRSLHSYIVLPFCIMDAKNS 420 (560)
T ss_pred ------cchH-------HHHHHHHHcccccchhhHHhhcccCccccchheeeeeccHHHHhhhhhhhHhHHHHHHhhccc
Confidence 1110 00000000000 00 00000000000 0001100000 11122233
Q ss_pred CHHHHHHHHHHHHHHHHHHHh--hccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCcc--
Q 013459 197 SETVIENCKSIRNEMRSAISS--LLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY-- 272 (442)
Q Consensus 197 ~~~~~~~a~~~r~~~~~~~~~--~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~-- 272 (442)
...+.++.+..++.++.++.. ...+.|+||+|+.+.+||+|+..... ...+.||.+||++|+|+.+||+++
T Consensus 421 ~~~~~~~~~~~~e~yrlk~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~~-----~~~~~Yt~LfN~Ld~Pag~vpvt~v~ 495 (560)
T KOG1212|consen 421 DTAELRQNYEDIESYRLKFILYWLLGKDDVLICPSFPTPAPPHNYPLLL-----VNGFSYTGLFNVLDFPAGVVPVTTVT 495 (560)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCCCCCcCCCchhh-----ccchhHHHHHHhccCCcccccccccc
Confidence 334444455555555544444 44688999999999999999854322 234579999999999977776532
Q ss_pred ------------------------C-CCCceeEEEecccCCcHHHHHHHHHHHHHHH
Q 013459 273 ------------------------Y-DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 304 (442)
Q Consensus 273 ------------------------~-~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~~ 304 (442)
. .|||+|+|+++.+++|+.+++.+..+++.+.
T Consensus 496 ~~d~~~~~~~~~D~~~~~~~~g~~~s~GlPigVQVVa~p~~delcL~va~~lE~~~g 552 (560)
T KOG1212|consen 496 QKDEKEEEYPMNDKWATKVPKGSLDSRGLPIGVQVVANPNQDELCLAVARELERKFG 552 (560)
T ss_pred hhhhcccccccccHHHHhCcccccCCCCCceeEEEecCCCchHHHHHHHHHHHHHhC
Confidence 2 6999999999999999999999999988654
No 33
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=4.4e-18 Score=145.16 Aligned_cols=121 Identities=40% Similarity=0.579 Sum_probs=116.0
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
+....++.+...|+.+++.++|++|+..|.+||+++|.++..|.+++.+|.++|.|+.|+++|+.++.++|+..++|..+
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 441 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 441 (442)
|.+|..+|++++|++.|+++++++|+|+..+..|..+++.+
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887654
No 34
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.71 E-value=5.6e-16 Score=124.49 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=107.7
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcC
Q 013459 329 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG 408 (442)
Q Consensus 329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~ 408 (442)
++.+|..+++.|+|++|+..|++++.++|++..++..+|.++.++|++++|+..|++++.++|+++.+++++|.++..+|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 409 YYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 409 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
++++|++.|++++++.|+++..+..++.+...
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999888877654
No 35
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.65 E-value=8.6e-15 Score=115.03 Aligned_cols=109 Identities=9% Similarity=-0.013 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
++..+..+.+|..++..|++++|+..|+-...++|.+...|++||.|+..+|+|++|+..|.+++.++|+++.++++.|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRAS 431 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 431 (442)
|+...|+.+.|.+.|+.++....+++.-.
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~ 140 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVSEHQ 140 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccChhHH
Confidence 99999999999999999999985444433
No 36
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.63 E-value=1.9e-14 Score=115.25 Aligned_cols=121 Identities=16% Similarity=0.186 Sum_probs=113.9
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
..|.+....+.+|..+++.|++++|+..|++++..+|++..++..+|.++...|++++|+..++++++.+|.+...++.+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 34677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 441 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 441 (442)
|.++...|++++|++.|+++++++|++........++.+.+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999888777776554
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.60 E-value=3.1e-14 Score=132.12 Aligned_cols=114 Identities=35% Similarity=0.495 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 407 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 407 (442)
.+...|..++..++|++|+.+|+++++++|++..+++++|.+|.++|++++|+.+++++++++|.+..+++.+|.+|..+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459 408 GYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 441 (442)
Q Consensus 408 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 441 (442)
|+|++|+.+|+++++++|++..+...+..+...+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987654
No 38
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1e-13 Score=127.09 Aligned_cols=118 Identities=41% Similarity=0.603 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|..+......|+.+|+.|+|.+|+.+|+++|..+|++...|.+++.||.+++++..|+++++.+++++|++..+|+..|.
T Consensus 355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGA 434 (539)
T ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 56677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
++..+.+|++|.+.|+++++++|++.++...+.+|.+.
T Consensus 435 al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988653
No 39
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.57 E-value=8.3e-14 Score=118.02 Aligned_cols=120 Identities=23% Similarity=0.252 Sum_probs=108.6
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHhcC--HHHHHHHHHHHHhcCCccHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY-LESGS--FLQAEADCTKAINLDKKNVK 395 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~--~~~A~~~~~~~l~~~p~~~~ 395 (442)
+..+|.+.+.|+.+|..+...|++++|+..|+++++++|++..++..+|.++ ...|+ +++|.+.++++++++|++..
T Consensus 66 L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~ 145 (198)
T PRK10370 66 IRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVT 145 (198)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChh
Confidence 4445889999999999999999999999999999999999999999999975 67787 59999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
+++++|.++.+.|++++|+++|+++++++|.+..-...++.++
T Consensus 146 al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i~ 188 (198)
T PRK10370 146 ALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESIN 188 (198)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 9999999999999999999999999999987765555545444
No 40
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.52 E-value=2.2e-13 Score=126.59 Aligned_cols=122 Identities=21% Similarity=0.154 Sum_probs=115.1
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 399 (442)
.-.|+-+.++.++|..|.++|++++|+.+|++++.+.|...+++.++|..|-.+|+...|+++|.+++..+|...+++.+
T Consensus 382 ~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsN 461 (966)
T KOG4626|consen 382 EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSN 461 (966)
T ss_pred hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhh
Confidence 34478888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459 400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 441 (442)
Q Consensus 400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 441 (442)
+|.+|...|+.++|++.|+.+++++|+.+++..++..+.+.+
T Consensus 462 Lasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 462 LASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred HHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence 999999999999999999999999999999999998887653
No 41
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.2e-13 Score=120.54 Aligned_cols=118 Identities=36% Similarity=0.485 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---------------NATYYSNRAAAYLESGSFLQAEADCTKAIN 388 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 388 (442)
..+......|+.+++.|+|..|+..|++++..-.. -..++.|++.||.++++|.+|+..+.++|.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 35667788899999999999999999999876331 135788999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459 389 LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 441 (442)
Q Consensus 389 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 441 (442)
++|+|..++|..|.++..+++|+.|+..|+++++++|+|..+...+..|++..
T Consensus 286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998653
No 42
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.51 E-value=1.1e-13 Score=128.61 Aligned_cols=117 Identities=24% Similarity=0.175 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|..+.++-++|.+|+.+|+.+-|+..|+++++++|+.+++|.++|+++-..|+..||+.+|.+++.+.|+.+++++++|.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 55555555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+|.++|.+++|...|+++++..|+...+..+++.+.+
T Consensus 363 i~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYK 399 (966)
T ss_pred HHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHH
Confidence 6666666666666666666666666666666665554
No 43
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.50 E-value=9.6e-13 Score=119.57 Aligned_cols=107 Identities=22% Similarity=0.216 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
+..+..++.+|..+...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++++|++..+++++|.
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
++...|++++|++.|+++++++|+++.
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999974
No 44
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.43 E-value=5.2e-12 Score=98.57 Aligned_cols=110 Identities=17% Similarity=0.171 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLR 399 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~ 399 (442)
++.++..|..+++.|+|++|+..|+++++.+|++ ..+++.+|.++.+.+++++|+..|++++..+|++ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999876 5789999999999999999999999999998875 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459 400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD 435 (442)
Q Consensus 400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 435 (442)
+|.++.+++++++|.+.++++++..|++..+.....
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 999999999999999999999999999987765544
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=3.1e-13 Score=126.89 Aligned_cols=120 Identities=22% Similarity=0.176 Sum_probs=92.0
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
+..+|..++.|..+|+++--+++++.|+++|+++++++|.+.-+|..+|.=+....+++.|..+|++++..+|.+-.+||
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwY 493 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWY 493 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHH
Confidence 44557778888888888888888888888888888888887777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
.+|.+|.++++++.|+-+|++|++++|.|..+.-.++...
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~ 533 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQ 533 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHH
Confidence 7777777777777777777777777777766655555444
No 46
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.41 E-value=6.5e-12 Score=126.51 Aligned_cols=117 Identities=20% Similarity=0.185 Sum_probs=84.3
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.|.....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|++++.++|++..+++++|
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 35556667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
.++.++|++++|+..|+++++.+|+++.++..++.+.
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~ 477 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELL 477 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 7777777777777777777777777777666665554
No 47
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.40 E-value=5.3e-12 Score=104.04 Aligned_cols=123 Identities=20% Similarity=0.085 Sum_probs=112.5
Q ss_pred ccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcc
Q 013459 316 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKN 393 (442)
Q Consensus 316 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~ 393 (442)
.+.+..+|+...+|..+|..|.+.|+.+.|-+.|+++++++|++.++++|.|..++.+|+|++|.+.|++++.. .+..
T Consensus 59 ekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~ 138 (250)
T COG3063 59 EKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEP 138 (250)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCc
Confidence 33455668999999999999999999999999999999999999999999999999999999999999999874 2455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 394 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
...+-|+|.|..+.|+++.|..+|+++++++|+++.....+...+
T Consensus 139 s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~ 183 (250)
T COG3063 139 SDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH 183 (250)
T ss_pred chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence 779999999999999999999999999999999999888887765
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.4e-11 Score=110.99 Aligned_cols=119 Identities=20% Similarity=0.195 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|....+|-.+|..|....+...|++.|++|++++|.+..+|+.+|+.|.-++-+.-|+-+|++++.+.|++...|..+|.
T Consensus 361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~ 440 (559)
T KOG1155|consen 361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGE 440 (559)
T ss_pred cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 441 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 441 (442)
||.++++.++|+++|.+++.....+..++..++++.+.+
T Consensus 441 CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 441 CYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL 479 (559)
T ss_pred HHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887654
No 49
>PRK15331 chaperone protein SicA; Provisional
Probab=99.37 E-value=2.9e-11 Score=95.58 Aligned_cols=115 Identities=14% Similarity=0.061 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
++.-+..+..|..++++|+|++|...|.-....++.+++.+..||.|+..+++|++|+..|..+..++++++...|..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 56677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
||..+|+.+.|.++|+.+++ .|.+.........+.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L 148 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYL 148 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHH
Confidence 99999999999999999998 577776665554443
No 50
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.37 E-value=3.6e-12 Score=110.59 Aligned_cols=112 Identities=46% Similarity=0.601 Sum_probs=107.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcC
Q 013459 329 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG 408 (442)
Q Consensus 329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~ 408 (442)
+.+.|+.||++|+|+||+.+|.+++..+|.++..+.+++.+|+++++|..|..+|..++.++.....+|...+.+...+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 409 YYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 409 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
...+|.+.++.++++.|++.+....++.+..+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl 211 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINSL 211 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcch
Confidence 99999999999999999999999888887653
No 51
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.37 E-value=1.5e-11 Score=124.02 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=112.0
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.|..+..++.+|.+++..|++++|+..|+++++++|++...+..+|.++..+|++++|+..|+++++++|+++.+++.+|
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
.++..+|++++|+.+|+++++++|++...+..++.+.
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 9999999999999999999999999999888877665
No 52
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=1.7e-11 Score=98.47 Aligned_cols=118 Identities=34% Similarity=0.469 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 397 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 397 (442)
-..+..+...|+.+|++|+|.+|..-|..+|++.|.. .-.|.++|.+.++++.++.|+..+.++++++|.+..++
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 3467788899999999999999999999999999875 35788999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
...|.+|.++..|++|+..|.+.++++|...++...+.++..+
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~ 214 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPK 214 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHH
Confidence 9999999999999999999999999999999988888776543
No 53
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.36 E-value=2.1e-11 Score=121.28 Aligned_cols=122 Identities=5% Similarity=-0.052 Sum_probs=113.3
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
....+..+++++.+|....+.|++++|..+++.++++.|++..++.+++.++.+++++++|+..+++++..+|++..+++
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
.+|.++.++|+|++|...|++++..+|+++.++..++.+.+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~ 200 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR 200 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887653
No 54
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.34 E-value=1.8e-11 Score=126.42 Aligned_cols=116 Identities=12% Similarity=0.011 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|. ...+..+|.++.+.|++++|+..|+++++++|++..++.++|.++.+.|++++|+..|+++++++|+++.+++++|.
T Consensus 607 P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~ 685 (987)
T PRK09782 607 PS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAY 685 (987)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44 67889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
++..+|++++|+++|+++++++|++.......+.+++
T Consensus 686 al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 686 VNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 9999999999999999999999999888877776654
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.34 E-value=3.3e-11 Score=99.39 Aligned_cols=115 Identities=17% Similarity=0.068 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
...+.+..++|..|++.|++..|...++++++.+|++..+|..++.+|.+.|+.+.|.+.|+++++++|++.+.+.|+|.
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHH
Q 013459 403 AREMLGYYKEAIEDFSYALVL--EPTNKRASLSADRL 437 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~ 437 (442)
-++.+|++++|.+.|++++.. .+.-...+.+++-|
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~C 148 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLC 148 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHH
Confidence 999999999999999999864 33444555555554
No 56
>PLN02789 farnesyltranstransferase
Probab=99.32 E-value=4.4e-11 Score=108.58 Aligned_cols=120 Identities=15% Similarity=0.026 Sum_probs=112.0
Q ss_pred cccchHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCH--HHHHHHHHHHHhcCCccHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF--LQAEADCTKAINLDKKNVK 395 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~A~~~~~~~l~~~p~~~~ 395 (442)
+.-+|....+|..++.++...+ ++++++..++++++.+|++..+|+.++.++.++++. ++++.+++++++.+|.|..
T Consensus 64 I~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~ 143 (320)
T PLN02789 64 IRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH 143 (320)
T ss_pred HHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH
Confidence 3445889999999999999998 689999999999999999999999999999999874 7889999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
+|..++.++..++++++|++++.++++.+|.|..+|.+...+.
T Consensus 144 AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl 186 (320)
T PLN02789 144 AWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI 186 (320)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999888764
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=3.5e-11 Score=119.15 Aligned_cols=117 Identities=10% Similarity=-0.041 Sum_probs=97.4
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
+|.++.++..+|..+...|++++|+..|+++++++|+++.+++.+|.++...|++++|+.+++++++++|.+...++.++
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~ 413 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKL 413 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 46777888888888888888999999999998888888888888888888889999999999999888888877777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHH
Q 013459 402 TAREMLGYYKEAIEDFSYALVLE-PTNKRASLSADRLR 438 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 438 (442)
.++...|++++|++.++++++.. |+++.++..++.+.
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l 451 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFL 451 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 77777888888888888888774 67777777666554
No 58
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.32 E-value=5.5e-11 Score=100.22 Aligned_cols=120 Identities=15% Similarity=0.153 Sum_probs=112.1
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
...++.+...+...|...++.|+|.+|+..+.++..+.|++..+|..+|.+|.+.|++++|...|.+++++.|+++.+..
T Consensus 93 ~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n 172 (257)
T COG5010 93 AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN 172 (257)
T ss_pred hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhh
Confidence 44456666777779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
|+|..|.-.|+++.|..++.++...-+.+..+..++..+.
T Consensus 173 Nlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 173 NLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVV 212 (257)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 9999999999999999999999999998999998888764
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=5.9e-11 Score=117.58 Aligned_cols=115 Identities=17% Similarity=0.074 Sum_probs=104.0
Q ss_pred cccchHHHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 319 TFNQKQSAEIAKEKGNQAYKD---------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
...+|..+..+..+|.++... +++++|+..++++++++|++..++..+|.++...|++++|+..|++++++
T Consensus 288 l~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 367 (553)
T PRK12370 288 VNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL 367 (553)
T ss_pred HhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344577888888888877643 45899999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459 390 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 433 (442)
Q Consensus 390 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 433 (442)
+|++..+++.+|.++...|++++|+..++++++++|++......
T Consensus 368 ~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 368 SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 99999999999999999999999999999999999998765433
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=9.2e-11 Score=106.63 Aligned_cols=118 Identities=18% Similarity=0.121 Sum_probs=93.5
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH------
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV------ 394 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~------ 394 (442)
..|..+.+++.+|..+...|+|++|+..|+++++++|++..++.++|.++...|++++|++.|+++++++|+++
T Consensus 93 l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~ 172 (296)
T PRK11189 93 LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL 172 (296)
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34778899999999999999999999999999999999999999999999999999999998888777655432
Q ss_pred ----------------------------------------------------------------HHHHHHHHHHHHcCCH
Q 013459 395 ----------------------------------------------------------------KAYLRRGTAREMLGYY 410 (442)
Q Consensus 395 ----------------------------------------------------------------~~~~~~a~~~~~~~~~ 410 (442)
++|+++|.++.++|++
T Consensus 173 ~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~ 252 (296)
T PRK11189 173 YLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDL 252 (296)
T ss_pred HHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 2455667777777777
Q ss_pred HHHHHHHHHHHhhCC-CChHHHHHHHHHH
Q 013459 411 KEAIEDFSYALVLEP-TNKRASLSADRLR 438 (442)
Q Consensus 411 ~~A~~~~~~~l~~~p-~~~~~~~~l~~~~ 438 (442)
++|+.+|+++++.+| +..+....+-++.
T Consensus 253 ~~A~~~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 253 DEAAALFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 777777777777775 5555544444443
No 61
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.31 E-value=9.5e-11 Score=103.14 Aligned_cols=114 Identities=13% Similarity=0.044 Sum_probs=102.8
Q ss_pred HHHHHHHHHHH-HhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHH
Q 013459 326 AEIAKEKGNQA-YKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYL 398 (442)
Q Consensus 326 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~ 398 (442)
....+..|..+ ++.++|++|+..|++.++.+|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45667777776 66799999999999999999998 5799999999999999999999999999988874 78999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
.+|.++..+|++++|.+.|+++++..|++..+.....++..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~~ 262 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLNA 262 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999988877777643
No 62
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.31 E-value=7.9e-11 Score=98.14 Aligned_cols=111 Identities=23% Similarity=0.254 Sum_probs=100.6
Q ss_pred ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Q 013459 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 394 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 394 (442)
.....+..+..++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++.++|++++|+..++++++.+|.+.
T Consensus 27 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 27 PINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP 106 (172)
T ss_pred ccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 344567888899999999999999999999999999887653 46899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCh
Q 013459 395 KAYLRRGTAREMLGY--------------YKEAIEDFSYALVLEPTNK 428 (442)
Q Consensus 395 ~~~~~~a~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~ 428 (442)
.++..+|.++..+++ +++|.++++++++.+|++-
T Consensus 107 ~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 107 SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 999999999999887 6789999999999999874
No 63
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.30 E-value=1.2e-11 Score=86.04 Aligned_cols=66 Identities=33% Similarity=0.505 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCC
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDK 391 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p 391 (442)
+..|+.+|..++..++|++|+..|+++++++|+++.+++++|.++.++| ++++|+++++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3445555555555555555555555555555555555555555555555 45555555555555444
No 64
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=3.5e-11 Score=113.32 Aligned_cols=121 Identities=19% Similarity=0.128 Sum_probs=115.5
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
-.|..-.+||-+|.+|+++++++.|.-+|++|++++|.+.....-+|..+.++|+.++|+..|++|+.++|.++-..|..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 34788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 441 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 441 (442)
|.++..+++|++|+..+++..++-|++..++..++++.+.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL 604 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988764
No 65
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.30 E-value=1.5e-11 Score=85.43 Aligned_cols=68 Identities=43% Similarity=0.596 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 013459 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-YYKEAIEDFSYALVLEP 425 (442)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p 425 (442)
+++..|..+|.++++.++|++|+..|+++++++|++..+++++|.++..+| ++++|+++++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 357889999999999999999999999999999999999999999999999 79999999999999998
No 66
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.30 E-value=6e-11 Score=88.11 Aligned_cols=99 Identities=39% Similarity=0.570 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 407 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 407 (442)
.++.+|..++..|++++|+..++++++..|++..++..+|.++...+++++|+++|++++...|.+...++.++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 013459 408 GYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 408 ~~~~~A~~~~~~~l~~~p~ 426 (442)
|++++|.+.++++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988874
No 67
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.29 E-value=1.8e-11 Score=110.89 Aligned_cols=118 Identities=19% Similarity=0.153 Sum_probs=104.6
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.+.+...|...|.++.+.|++++|+..|+++++++|++..+...++.++...|+++++...++...+..|.++..+..+|
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la 221 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALA 221 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999998888888999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
.++..+|++++|+.+|+++++.+|+|+.....++.+..
T Consensus 222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~ 259 (280)
T PF13429_consen 222 AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALE 259 (280)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT
T ss_pred HHhccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999888764
No 68
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.5e-11 Score=108.57 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 404 (442)
.++...-+|+.|...++++.|+.+|+++++++|....+|..+|.=|+.+++...|+..|++|++++|.+..+||.+|++|
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAY 408 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence 44566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459 405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 441 (442)
Q Consensus 405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 441 (442)
.-++-..=|+-+|++++++.|++...|..+++|...+
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL 445 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999997543
No 69
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.28 E-value=4.7e-11 Score=103.80 Aligned_cols=115 Identities=24% Similarity=0.261 Sum_probs=107.1
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 399 (442)
..+|.+.+..+++|..++..|++.+|+..|..+++.+|++..+++.++.+|+.+|+-+.|+.++.+++++.|+...+...
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 34477888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459 400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA 434 (442)
Q Consensus 400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 434 (442)
.|.++.++|++++|...|++.++.+|++.......
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaq 146 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQ 146 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 99999999999999999999999999665544433
No 70
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=1.8e-11 Score=113.48 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
.++++..-+|..|+..++|++|+.+|+.||..+|++...|+.||..+..-.+.++|+..|.||+++.|....++|++|++
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS 507 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence 56778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC
Q 013459 404 REMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 404 ~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
|..+|.|++|.++|..+|.+.+.
T Consensus 508 ~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 508 CMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999998765
No 71
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.27 E-value=4.9e-11 Score=118.71 Aligned_cols=119 Identities=13% Similarity=-0.051 Sum_probs=109.4
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
-.|+...+...++..+.+.+++++|+..++++++.+|++..+++.+|.++.++|++++|+..|++++..+|++.+++..+
T Consensus 115 ~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~ 194 (694)
T PRK15179 115 RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGW 194 (694)
T ss_pred hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHH-HHHHHHHHh
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRA-SLSADRLRK 439 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~~l~~~~~ 439 (442)
|.++.+.|+.++|...|+++++...+.... ...+.++++
T Consensus 195 a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (694)
T PRK15179 195 AQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNA 234 (694)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHH
Confidence 999999999999999999999998776655 444555543
No 72
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.27 E-value=1.8e-11 Score=88.64 Aligned_cols=82 Identities=27% Similarity=0.404 Sum_probs=73.5
Q ss_pred hcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHH
Q 013459 338 KDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 415 (442)
Q Consensus 338 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~ 415 (442)
.+|+|++|+..|+++++.+|. +...++.+|.|+++.|+|++|+..+++ .+.++.+...++.+|.|+.++|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 466788899999999999999999999 88888888999999999999999999999
Q ss_pred HHHHH
Q 013459 416 DFSYA 420 (442)
Q Consensus 416 ~~~~~ 420 (442)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 73
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.25 E-value=6.8e-11 Score=94.99 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=85.9
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 346 ISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 346 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
..+|+++++++|++ ++.+|.++.+.|++++|+..|++++.++|.+..+|+.+|.++..+|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46789999999875 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhh
Q 013459 426 TNKRASLSADRLRKV 440 (442)
Q Consensus 426 ~~~~~~~~l~~~~~~ 440 (442)
+++.++..++.+...
T Consensus 90 ~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 90 SHPEPVYQTGVCLKM 104 (144)
T ss_pred CCcHHHHHHHHHHHH
Confidence 999999999987653
No 74
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.25 E-value=1.6e-10 Score=97.93 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=94.0
Q ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH-HHcCC--HHHHHH
Q 013459 339 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR-EMLGY--YKEAIE 415 (442)
Q Consensus 339 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~-~~~~~--~~~A~~ 415 (442)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|+++++++|++.+++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHH
Q 013459 416 DFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 416 ~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
.++++++++|++..++..++...
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~ 154 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDA 154 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHH
Confidence 99999999999999998887765
No 75
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.24 E-value=1.8e-10 Score=101.57 Aligned_cols=116 Identities=22% Similarity=0.218 Sum_probs=104.1
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH-
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK- 395 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~- 395 (442)
...+..+..++.+|..++..|+|++|+..|++++..+|+++ .+++.+|.++.+.+++++|+..|+++++.+|++..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 34466788999999999999999999999999999999875 67899999999999999999999999999998765
Q ss_pred --HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459 396 --AYLRRGTAREML--------GYYKEAIEDFSYALVLEPTNKRASLSAD 435 (442)
Q Consensus 396 --~~~~~a~~~~~~--------~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 435 (442)
+++.+|.++.+. +++++|++.|+++++.+|++...+..+.
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 799999999876 7899999999999999999987654443
No 76
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=8.5e-11 Score=108.19 Aligned_cols=112 Identities=39% Similarity=0.501 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 406 (442)
..+...|+..+..|+|+.|+.+|.++|.++|.+...|.++..+|..+++|++|+++-.+..+++|.-+.+|..+|.++..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 407 LGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 407 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
+|+|++|+..|.+.|+++|+|..+...+....
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999999998887765
No 77
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.8e-10 Score=98.62 Aligned_cols=118 Identities=23% Similarity=0.163 Sum_probs=107.0
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCccHHH
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLDKKNVKA 396 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~ 396 (442)
..+|++++-|..+|.+|+.+|+++.|...|.+++++.|++++.+..+|.+++... ...++...++++++++|.|..+
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 3458999999999999999999999999999999999999999999998887765 3779999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 397 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
.+.+|..+++.|+|.+|...+++.+++.|.+..-...+++.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 99999999999999999999999999999877655555443
No 78
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.1e-10 Score=106.18 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|.++.+|+.+|..++-.++|++|+..|+++++++|++.-++..++.+.++++++.+++..|+.+.+..|..++.+...|.
T Consensus 391 p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAe 470 (606)
T KOG0547|consen 391 PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAE 470 (606)
T ss_pred CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
++..+++|++|.+.|.+|+++.|.
T Consensus 471 iLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 471 ILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhhHHhHHHHHHHHHHHHhhccc
Confidence 555555555555555555555554
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=4.5e-10 Score=98.52 Aligned_cols=115 Identities=18% Similarity=0.155 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--KKNVKAYLRR 400 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~ 400 (442)
|.....+..+|..+...|++++|++.|+++++..|++..++.++|.++...|++++|++.|++++... +.....++.+
T Consensus 62 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 141 (234)
T TIGR02521 62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENA 141 (234)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHH
Confidence 45556666677777777777777777777777777766666667777777777777777777666543 3345566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
|.++...|++++|.+.++++++.+|++...+..++.+
T Consensus 142 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 6666666666666666666666666666655555544
No 80
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.22 E-value=2.9e-10 Score=117.69 Aligned_cols=116 Identities=18% Similarity=0.066 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
.....+..++..+...|++++|+..|+++++++|+ ..++.++|.++.++|++++|+..|++++.++|++..++.++|.+
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA 652 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33444445555666679999999999999999996 89999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 404 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 404 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
+.+.|++++|++.|+++++++|+++.++.+++.+...
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988887643
No 81
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.4e-10 Score=103.34 Aligned_cols=119 Identities=32% Similarity=0.506 Sum_probs=107.5
Q ss_pred ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Q 013459 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 393 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 393 (442)
.....+.....+...|+..+++|+|..|.++|.++|.++|++ ...|.+++.+...+|+.++|+.++..++++++..
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 455567888899999999999999999999999999999986 5689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 394 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
.+++...|.|+..++++++|++.|++++++..+ .+....+.+.
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A 363 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREA 363 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHH
Confidence 999999999999999999999999999999887 4444444443
No 82
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.6e-10 Score=105.04 Aligned_cols=116 Identities=20% Similarity=0.136 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|.....|..+|..|...++-++-...|+++.+++|++++.|+.+|++++-+++|++|+.+|+++++++|++.-++..++.
T Consensus 357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~ 436 (606)
T KOG0547|consen 357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCC 436 (606)
T ss_pred cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH
Confidence 34444489999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
+.+++++++++.+.|+.+.+..|+.++.....+++.
T Consensus 437 a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiL 472 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEIL 472 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 999999999999999999999999999998888775
No 83
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.20 E-value=5e-10 Score=93.01 Aligned_cols=107 Identities=19% Similarity=0.137 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 399 (442)
...+..++.+|..+..+|+|++|+..|++++.+.++. ..++.++|.++.+.|++++|+..|++++.++|.+...+.+
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 4578889999999999999999999999999987663 4589999999999999999999999999999999999999
Q ss_pred HHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCChH
Q 013459 400 RGTARE-------MLGYYK-------EAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 400 ~a~~~~-------~~~~~~-------~A~~~~~~~l~~~p~~~~ 429 (442)
+|.++. .+|+++ +|...|++++..+|++..
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 999988 777766 666777788888886553
No 84
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.20 E-value=6.8e-10 Score=97.39 Aligned_cols=116 Identities=20% Similarity=0.198 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
....+..+..+|..++..|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++.+|.+..+++++|
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG 106 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHH
Q 013459 402 TAREMLGYYKEAIEDFSYALVLE--PTNKRASLSADRL 437 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~ 437 (442)
.++...|++++|.+.++++++.. +.....+..++.+
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 99999999999999999999854 3444455444443
No 85
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.20 E-value=9.4e-11 Score=80.32 Aligned_cols=63 Identities=30% Similarity=0.390 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013459 365 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427 (442)
Q Consensus 365 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 427 (442)
.+|..+++.|++++|+..|+++++.+|++.++++.+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555555555555555555555555555555555555555555555555555555555554
No 86
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.18 E-value=4.5e-10 Score=113.28 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHhcccHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLK----AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
|.....++.+|..+...|++++ |+..|+++++++|++..++..+|.++.+.|++++|+..++++++++|++..+++
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~ 322 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA 322 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3344455555555555555543 455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
.+|.++.+.|++++|++.|+++++.+|++..
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 5555555555555555555555555555443
No 87
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.18 E-value=1.4e-10 Score=79.45 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=60.8
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Q 013459 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 394 (442)
Q Consensus 330 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 394 (442)
+.+|..+++.|+|++|+..|+++++.+|++..+++.+|.++.++|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999875
No 88
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.15 E-value=1.4e-09 Score=93.20 Aligned_cols=111 Identities=19% Similarity=0.189 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHH
Q 013459 329 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGT 402 (442)
Q Consensus 329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~ 402 (442)
.|+.|..+++.|+|.+|...|...++..|++ +.++|.||.+++.+|+|+.|...|..+.+..|.+ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 8999999999999999999999999999986 6899999999999999999999999999988776 689999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+...+|+.++|...|+++++..|+...+......+++
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~~~ 260 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVALKA 260 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence 9999999999999999999999999998887776643
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.14 E-value=2.4e-09 Score=94.37 Aligned_cols=117 Identities=17% Similarity=0.081 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHh--------cCHHHHHHHHHHHHhcCC
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT---YYSNRAAAYLES--------GSFLQAEADCTKAINLDK 391 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~--------~~~~~A~~~~~~~l~~~p 391 (442)
+....+++.+|..+++.+++++|+..|+++++.+|++.. +++.+|.++.+. +++++|++.|++++..+|
T Consensus 67 ~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 67 PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 445578899999999999999999999999999998876 789999999887 889999999999999999
Q ss_pred ccHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHh
Q 013459 392 KNVKAY-----------------LRRGTAREMLGYYKEAIEDFSYALVLEPTNK---RASLSADRLRK 439 (442)
Q Consensus 392 ~~~~~~-----------------~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~ 439 (442)
++..++ +.+|.++...|++++|+..++++++..|+++ .++..++.+..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~ 214 (235)
T TIGR03302 147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYL 214 (235)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH
Confidence 885432 4678889999999999999999999988764 56666666543
No 90
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.13 E-value=9.1e-10 Score=111.04 Aligned_cols=116 Identities=9% Similarity=-0.028 Sum_probs=105.6
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
....|.....++.++......|++++|+..|+++++.+|++..++..+|.++.+.|++++|+..|+++++++|++..++.
T Consensus 69 l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~ 148 (656)
T PRK15174 69 VLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFA 148 (656)
T ss_pred HHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 44557888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA 434 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 434 (442)
.++.++...|++++|+..+++++...|++..++..+
T Consensus 149 ~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~ 184 (656)
T PRK15174 149 LHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC 184 (656)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999999999999999999988876554
No 91
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.11 E-value=9.8e-10 Score=87.76 Aligned_cols=93 Identities=19% Similarity=0.236 Sum_probs=88.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 347 SFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 347 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
++|+++++.+|++..+.+.+|.++.+.|++++|+..+++++..+|.++.+++.+|.++..+|++++|..+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHh
Q 013459 427 NKRASLSADRLRK 439 (442)
Q Consensus 427 ~~~~~~~l~~~~~ 439 (442)
+...+..++.+..
T Consensus 84 ~~~~~~~la~~~~ 96 (135)
T TIGR02552 84 DPRPYFHAAECLL 96 (135)
T ss_pred ChHHHHHHHHHHH
Confidence 9999988887764
No 92
>PLN02789 farnesyltranstransferase
Probab=99.11 E-value=2.8e-09 Score=96.84 Aligned_cols=120 Identities=18% Similarity=0.124 Sum_probs=107.7
Q ss_pred ccchHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQW--LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 397 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 397 (442)
..+|.+.++|+.++.++.+.++. ++++.+++++++.+|++..+|..++.++...++++++++++.++++.+|.|..+|
T Consensus 100 ~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW 179 (320)
T PLN02789 100 EDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW 179 (320)
T ss_pred HHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence 34578888999999999888874 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc---CCH----HHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 398 LRRGTAREML---GYY----KEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 398 ~~~a~~~~~~---~~~----~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+.++.++.++ +++ ++++++..++++++|+|..+|.++..+..
T Consensus 180 ~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~ 228 (320)
T PLN02789 180 NQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFK 228 (320)
T ss_pred HHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Confidence 9999998776 333 57888899999999999999998887754
No 93
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=8.2e-10 Score=95.05 Aligned_cols=89 Identities=20% Similarity=0.176 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|.++-.|.++|..|.+.|+|+.|++..+.++.++|.+..+|..+|.+|..+|++++|+..|+++|+++|+|...+-+|..
T Consensus 112 P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 112 PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHcCCHH
Q 013459 403 AREMLGYYK 411 (442)
Q Consensus 403 ~~~~~~~~~ 411 (442)
+-.++++-.
T Consensus 192 Ae~~l~e~~ 200 (304)
T KOG0553|consen 192 AEQKLNEPK 200 (304)
T ss_pred HHHHhcCCC
Confidence 887777655
No 94
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.10 E-value=1.9e-09 Score=111.03 Aligned_cols=115 Identities=13% Similarity=0.156 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
+..+..+..+|..+.+.|++++|+.+|+++++++|++..++..++.++...|++++|+..++++++.+|++.. ++.+|.
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~ 124 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAY 124 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence 5667789999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
++...|++++|+..++++++++|++..++..++.+.
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l 160 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQAL 160 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999988777654
No 95
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.09 E-value=3.7e-09 Score=81.96 Aligned_cols=111 Identities=19% Similarity=0.162 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---HHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV---KAYL 398 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~ 398 (442)
.+..++..|...++.|+|++|++.|+.+....|.. ..+...++.+|++.+++++|+..+++.++++|.++ -++|
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45789999999999999999999999999988764 57889999999999999999999999999999874 5889
Q ss_pred HHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459 399 RRGTAREMLGY---------------YKEAIEDFSYALVLEPTNKRASLSAD 435 (442)
Q Consensus 399 ~~a~~~~~~~~---------------~~~A~~~~~~~l~~~p~~~~~~~~l~ 435 (442)
..|.+++++.+ ..+|...|++.++..|++.-+.....
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~ 140 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARK 140 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 99999998876 78999999999999999987765543
No 96
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.09 E-value=1.6e-09 Score=116.73 Aligned_cols=118 Identities=19% Similarity=0.228 Sum_probs=106.0
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH--------------HHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT--------------YYSNRAAAYLESGSFLQAEADCTKA 386 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~ 386 (442)
..|.+..++..+|.++++.|++++|+.+|+++++.+|++.. ....+|.++.+.|++++|+..|+++
T Consensus 298 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 298 ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34777899999999999999999999999999999998643 1234588899999999999999999
Q ss_pred HhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 387 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 387 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
++++|++..+++.+|.++...|++++|+++|+++++++|++..++..+..+.
T Consensus 378 l~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 378 RQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998887776653
No 97
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=8.6e-10 Score=91.32 Aligned_cols=115 Identities=32% Similarity=0.378 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
..+..+...|+.++...+|.+|+.+|.++|.++|..+..|.+++.||+++++|+.+...+++++++.|+...++|.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC-----CChHHHHHHHHHH
Q 013459 404 REMLGYYKEAIEDFSYALVLEP-----TNKRASLSADRLR 438 (442)
Q Consensus 404 ~~~~~~~~~A~~~~~~~l~~~p-----~~~~~~~~l~~~~ 438 (442)
+.+...|++|+..++++..+.. ...++...|..++
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred HHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999999999999999976532 2234555555544
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.08 E-value=2.3e-09 Score=90.62 Aligned_cols=117 Identities=16% Similarity=0.184 Sum_probs=109.4
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
.+|++..+ ...+..++..|+-+++.....++...+|.+......+|..++..|+|.+|+..++++..++|++.++|..+
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 34666667 88999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
|.+|.+.|++++|...|.+++++.|+++.+..+++...
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~ 178 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSL 178 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHH
Confidence 99999999999999999999999999999999888664
No 99
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.08 E-value=1.3e-09 Score=104.39 Aligned_cols=108 Identities=29% Similarity=0.221 Sum_probs=103.2
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHH--HHHHHHhcCCccHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA--DCTKAINLDKKNVKAYLR 399 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~--~~~~~l~~~p~~~~~~~~ 399 (442)
.+..+..|+..|..+..+|++.||.+.|..++.++|++......+|.++.+.|+..-|.. .+..+++++|.|+++||+
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 377888999999999999999999999999999999999999999999999999888888 999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459 400 RGTAREMLGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
+|.++.++|+.++|.++|+.++++++.+|-
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999998874
No 100
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.07 E-value=4.2e-09 Score=96.39 Aligned_cols=123 Identities=18% Similarity=0.078 Sum_probs=98.8
Q ss_pred ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 397 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 397 (442)
...+.|+++-.+-..+..++..++..+|.+.+++++.++|+......++|+.+++.|++++|+..+.+.+..+|+++..|
T Consensus 332 L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w 411 (484)
T COG4783 332 LIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGW 411 (484)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHH
Confidence 34555777777777888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
..++++|..+|+..+|...+-+.+.+..+-..+...+.+.++.
T Consensus 412 ~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 412 DLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 8888888888888888877777777777776766666666544
No 101
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.06 E-value=4.4e-09 Score=96.27 Aligned_cols=118 Identities=19% Similarity=0.119 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
+.....+|-.|..++..+++++|...++..+...|+|+..+...+.++++.++.++|++.+++++.++|+..-.++++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 46677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
+|.+.|++++|++.++..+..+|+++..|..+++....
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~ 420 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999987643
No 102
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.06 E-value=2.1e-09 Score=84.80 Aligned_cols=88 Identities=15% Similarity=0.076 Sum_probs=82.3
Q ss_pred HHhhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459 352 AIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 352 al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 430 (442)
...+. ++..+..+.+|..+++.|++++|++.|+-+..++|.+...|+++|.|+..+|+|++|+..|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 44566 77788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 013459 431 SLSADRLRK 439 (442)
Q Consensus 431 ~~~l~~~~~ 439 (442)
..+++.+.-
T Consensus 106 ~~~ag~c~L 114 (157)
T PRK15363 106 PWAAAECYL 114 (157)
T ss_pred HHHHHHHHH
Confidence 999998863
No 103
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.05 E-value=6e-09 Score=101.65 Aligned_cols=108 Identities=21% Similarity=0.197 Sum_probs=95.6
Q ss_pred ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 397 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 397 (442)
-+...|....+|+.+|.+|-++|+.+.+....-.|-.++|.+.+.|..++....++|++++|.-+|.++++.+|.+.+..
T Consensus 165 vIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~ 244 (895)
T KOG2076|consen 165 VIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELI 244 (895)
T ss_pred HHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHH
Confidence 35566888888999999999999999999888888888998889999999989899999999999999999999998888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 398 LRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
+..+.+|.++|++..|...|++++.+.|
T Consensus 245 ~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 245 YERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 8899999999999999999999999888
No 104
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.04 E-value=7.7e-09 Score=90.26 Aligned_cols=114 Identities=19% Similarity=0.225 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 406 (442)
..+......++..|++..|++..++.+++.|.+...+..++.||...|+...||.+++.+-++..++.+.+|.++.+++.
T Consensus 156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 156 WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence 34556677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 407 LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 407 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
.|+.+.++...++|++++|+.....-....++++
T Consensus 236 vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKV 269 (504)
T ss_pred hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHH
Confidence 9999999999999999999999988877777765
No 105
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=7.7e-09 Score=86.67 Aligned_cols=151 Identities=17% Similarity=0.094 Sum_probs=120.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013459 287 GGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNR 366 (442)
Q Consensus 287 ~~d~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 366 (442)
....++..+-..+.++......+..... ..+.++|.+...+...-.....+|+--+|++.+.+.++.++.|.++|..+
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~--~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eL 160 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYE--SLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHEL 160 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHH--HHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4455666666666666666666665554 23444577777777777777888888899999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 367 AAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG---YYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 367 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+.+|+..|+|++|.-+++.++-+.|.++-.+..+|.+++-+| +++.|.++|.++++++|.+-.++..+-.+..
T Consensus 161 aeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 161 AEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988777 4677999999999999987777776655543
No 106
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=2.6e-08 Score=83.59 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|.+.......|..+-..|+|++|+++|+..++-+|.+...+-..-.+...+|+..+|++.+...++..+.+.++|..++.
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae 162 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE 162 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 66677788889999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+|...|+|++|.-++++++-+.|-++.....++.++.
T Consensus 163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLY 199 (289)
T ss_pred HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999888887753
No 107
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.01 E-value=1.7e-09 Score=74.83 Aligned_cols=65 Identities=22% Similarity=0.229 Sum_probs=41.3
Q ss_pred HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 337 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 337 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
++.|+|++|+..|+++++.+|++..+++.++.||++.|++++|...+++++..+|+++..+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 45566666666666666666666666666666666666666666666666666666655555444
No 108
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.01 E-value=6.8e-09 Score=111.88 Aligned_cols=115 Identities=16% Similarity=0.146 Sum_probs=99.4
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH--------------------------------
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA-------------------------------- 369 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~-------------------------------- 369 (442)
.|.+..+++.+|.++...|++++|++.|+++++++|++..++..++.+
T Consensus 381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 466777888999999999999999999999999999987766555443
Q ss_pred ----------HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459 370 ----------YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR 436 (442)
Q Consensus 370 ----------~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 436 (442)
+...|++++|++.|+++++++|+++.+++.+|.+|.++|++++|++.++++++.+|+++.++..++.
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al 537 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGL 537 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4467899999999999999999999999999999999999999999999999999999887655443
No 109
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.99 E-value=2.7e-09 Score=74.94 Aligned_cols=69 Identities=29% Similarity=0.419 Sum_probs=44.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459 368 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR 436 (442)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 436 (442)
.+|.+.++|++|++++++++.++|+++..|+.+|.++..+|++++|.+.|+++++..|+++.+....+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 455666666666666666666666666666666666666666666666666666666666665554443
No 110
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.98 E-value=1.3e-08 Score=104.93 Aligned_cols=113 Identities=14% Similarity=-0.032 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 404 (442)
....+..++..+...|++++|++.+++++...|++..++..+|.++...|++++|++.+++++.++|++...++.+|.++
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
..++++++|++.++++++.+|+++.+...-...
T Consensus 438 l~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999877655443
No 111
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1.5e-09 Score=93.99 Aligned_cols=117 Identities=13% Similarity=0.134 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cc-cHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--KK-NVKAYLR 399 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~ 399 (442)
+.+.++.-.+|..|+-.++.+-|+.+|.++++..-.+++.+.++|.|.+.-++++-++..|++++... |+ -.+.||+
T Consensus 321 ~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYN 400 (478)
T KOG1129|consen 321 PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYN 400 (478)
T ss_pred CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhc
Confidence 55666777788889999999999999999999999999999999999999999999999999999764 33 3679999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+|.+....|++..|.++|+-++..++++.+++.+++.++.
T Consensus 401 lg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~ 440 (478)
T KOG1129|consen 401 LGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAA 440 (478)
T ss_pred cceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHh
Confidence 9999999999999999999999999999999999988763
No 112
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.97 E-value=4.4e-08 Score=93.40 Aligned_cols=110 Identities=12% Similarity=-0.020 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
|.....++.+|..+.+.|++++|++.|+++++.+|++ ..++..++.+|.+.|++++|+..++++++.+|+... +..++
T Consensus 211 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la 289 (389)
T PRK11788 211 PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALA 289 (389)
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHH
Confidence 3344555566666666666666666666666655544 234555566666666666666666666666655433 25566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLS 433 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 433 (442)
.++.+.|++++|.+.++++++.+|++......
T Consensus 290 ~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l 321 (389)
T PRK11788 290 QLLEEQEGPEAAQALLREQLRRHPSLRGFHRL 321 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 66666666666666666666666665544433
No 113
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.97 E-value=2e-09 Score=74.40 Aligned_cols=68 Identities=24% Similarity=0.209 Sum_probs=62.5
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 370 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 370 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
+++.|++++|+..|++++..+|++.++++.++.+|.+.|++++|.+.+++++..+|+++..+..++++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 36789999999999999999999999999999999999999999999999999999998888777654
No 114
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.97 E-value=1.1e-09 Score=100.23 Aligned_cols=116 Identities=41% Similarity=0.544 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 405 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 405 (442)
+..+...++..+..++|+.|+..|.++|+++|++...+.+++.++.+.++|..|+.++.++++++|....+|+..|.+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459 406 MLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 441 (442)
Q Consensus 406 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 441 (442)
.++++.+|...|++...+.|+++.+...+.+|++++
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIV 119 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998764
No 115
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.97 E-value=9.8e-09 Score=108.67 Aligned_cols=117 Identities=20% Similarity=0.121 Sum_probs=102.9
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
..|.+...++.+|..+.+.|++++|+..|+++++.+|++..++..++.++...|+ .+|+..+++++.+.|+++..+..+
T Consensus 765 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ 843 (899)
T TIGR02917 765 THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTL 843 (899)
T ss_pred hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3466677888889999999999999999999999999998889999999999988 789999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
|.++...|++++|.++|+++++++|.++.+...+..+.
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 881 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL 881 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 99999999999999999999999999888887777664
No 116
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=4.9e-09 Score=97.65 Aligned_cols=76 Identities=22% Similarity=0.211 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459 360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD 435 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 435 (442)
++++..||.+|.-.++|++|+.+|+.||..+|++...|..||-.+..-.+.++|+..|++|+++.|+..+++.+++
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlg 505 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLG 505 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhh
Confidence 3444455555555555666666666666666665556666665555555566666666666666655555444443
No 117
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.95 E-value=1.7e-08 Score=99.31 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=111.1
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 397 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 397 (442)
....+..++.+|++|+.+..+|+|++|..+|.++++.++++ .-.++.+|+.|++.|+++.++.+|+++++..|++.+.+
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 34556778889999999999999999999999999999988 67888999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC----CHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 398 LRRGTAREMLG----YYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 398 ~~~a~~~~~~~----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
..+|.+|...+ ..+.|..++.++++..|.+.++|..++.+..
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 99999998775 5688999999999999999999999988864
No 118
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.94 E-value=3.6e-08 Score=104.38 Aligned_cols=110 Identities=24% Similarity=0.216 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
.....+..+|..++..|++++|+..|+++++.+|++..++..++.++...|++++|+..++++++.+|.+..+++.+|.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 202 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDL 202 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 33444444444444444444454444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459 404 REMLGYYKEAIEDFSYALVLEPTNKRASLS 433 (442)
Q Consensus 404 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 433 (442)
+...|++++|.+.|+++++.+|++...+..
T Consensus 203 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 232 (899)
T TIGR02917 203 LLSLGNIELALAAYRKAIALRPNNPAVLLA 232 (899)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 444444444444444444444444444333
No 119
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=8.6e-09 Score=95.67 Aligned_cols=118 Identities=22% Similarity=0.270 Sum_probs=104.4
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC----CCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN----GNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 393 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 393 (442)
-.|.++-.+.++|.+.++.+.|.+|..+|+.++..- ++. ...+.++|.++.+++.+++|+..|++++.+.|.+
T Consensus 409 i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 409 IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 347888899999999999999999999999999432 221 2458899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 394 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
..++-.+|.+|..+|+++.|+.+|.+++.++|+|.-+...++.+.
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999987777766553
No 120
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.93 E-value=2.9e-08 Score=94.67 Aligned_cols=116 Identities=22% Similarity=0.221 Sum_probs=100.6
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-----TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA 396 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 396 (442)
.+.....+..++..+.+.|++++|++.++++++..|.+. ..+..+|.++.+.|++++|++.|+++++.+|++..+
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 216 (389)
T PRK11788 137 GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRA 216 (389)
T ss_pred CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH
Confidence 456677899999999999999999999999999887653 356678999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHH
Q 013459 397 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNK-RASLSADRL 437 (442)
Q Consensus 397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~ 437 (442)
++.+|.++.+.|++++|.+.|+++++.+|++. ..+..+..+
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 258 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC 258 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH
Confidence 99999999999999999999999999988763 344444443
No 121
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.92 E-value=3.6e-08 Score=75.38 Aligned_cols=96 Identities=21% Similarity=0.038 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---NVKAYLRR 400 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~ 400 (442)
.++++.|..+-..|+.++|+.+|+++++...+. ..++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 468999999999999999999999999976544 568899999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 013459 401 GTAREMLGYYKEAIEDFSYALV 422 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~ 422 (442)
+.++...|++++|+..+..++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988775
No 122
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.92 E-value=7.1e-09 Score=72.80 Aligned_cols=70 Identities=17% Similarity=0.307 Sum_probs=64.9
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 333 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
...++++++|++|++.+++++.++|+++..+..+|.++.++|++++|+.+|+++++..|++..+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999999999887665543
No 123
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.91 E-value=4.7e-08 Score=83.60 Aligned_cols=113 Identities=22% Similarity=0.205 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAY 397 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~ 397 (442)
..+..++..|..+++.|+|.+|+..|++++...|.. ..+.+.+|.++++.+++.+|+..+++.++..|.+ ..++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 356789999999999999999999999999998875 5789999999999999999999999999999876 4689
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459 398 LRRGTAREMLG-----------YYKEAIEDFSYALVLEPTNKRASLSADR 436 (442)
Q Consensus 398 ~~~a~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 436 (442)
|.+|.++.++. ...+|...|+..++..|++.-+......
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~ 132 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR 132 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH
Confidence 99999976653 2458999999999999999866544433
No 124
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3e-08 Score=89.23 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 404 (442)
....+.+++.++.+.++|.+|+...+++|.++|+|..++|++|.++..+++|+.|+.+|+++++++|+|..+...+..+.
T Consensus 256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 256 KLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHcCCHHH-HHHHHHHHHhhCC
Q 013459 405 EMLGYYKE-AIEDFSYALVLEP 425 (442)
Q Consensus 405 ~~~~~~~~-A~~~~~~~l~~~p 425 (442)
.+..++.+ ..+.|.+++...+
T Consensus 336 ~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 87777655 4778888887655
No 125
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.90 E-value=6.6e-08 Score=84.71 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAY 397 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~ 397 (442)
..+..++..|..+++.|+|++|++.|++++...|....+ .+.+|.+|++.+++++|+..+++.++++|++ ..++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 356678999999999999999999999999999988654 4889999999999999999999999999877 5688
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 398 LRRGTAREMLG---------------Y---YKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 398 ~~~a~~~~~~~---------------~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
|.+|.++..++ + ..+|++.|++.++..|++.-+.....++
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl 167 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRL 167 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence 99998875554 1 2568899999999999987655444433
No 126
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.5e-08 Score=88.09 Aligned_cols=108 Identities=34% Similarity=0.507 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
.+.+..+...|+.|++..+|..|+..|.+.|+..-.+ ...|.+++.|.+.+|+|..|+.++.+++.++|.+..+++
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~ 157 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYI 157 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhh
Confidence 3477889999999999999999999999999875443 568999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 430 (442)
.-+.|+.++.++.+|...++..++++-+...+
T Consensus 158 R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 158 RGAKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 99999999999999998888877766544433
No 127
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.90 E-value=1.3e-07 Score=82.26 Aligned_cols=114 Identities=11% Similarity=0.037 Sum_probs=104.2
Q ss_pred ccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-H
Q 013459 316 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-V 394 (442)
Q Consensus 316 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~ 394 (442)
.......-+.++.+.++|..+....+.+.|+..+.++++.+|++..+-..+|.++...|+|++|++.++++++.||+. +
T Consensus 170 ~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ 249 (389)
T COG2956 170 LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS 249 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence 344555567889999999999999999999999999999999999999999999999999999999999999999987 6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459 395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
++.-.+-.||.++|+.++.+..+.++.+..++...
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 78888999999999999999999999998876543
No 128
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.89 E-value=2.1e-08 Score=92.33 Aligned_cols=72 Identities=19% Similarity=0.124 Sum_probs=67.7
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLD 390 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 390 (442)
...+|..+..++++|..|++.|+|++|+..|+++++++|++..+ |+++|.+|.++|++++|+.++++++++.
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45668999999999999999999999999999999999999854 9999999999999999999999999984
No 129
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.88 E-value=3.2e-08 Score=79.15 Aligned_cols=98 Identities=22% Similarity=0.210 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCC--
Q 013459 342 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS----------FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY-- 409 (442)
Q Consensus 342 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~-- 409 (442)
|+.|.+.++.....+|.+.+.+++-|.++..+.+ +++|+.-|+.++.++|+.+++++++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6788888999999999999988888877766643 6778888999999999999999999999987774
Q ss_pred ---------HHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 410 ---------YKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 410 ---------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
|++|..+|+++...+|+|...+..+....+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 788999999999999999998888876653
No 130
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.88 E-value=1.5e-08 Score=94.29 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=82.5
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
..|.....++.+|.++++.|+|++|+..++++++++|++..+++++|.+++++|+|++|+..|+++++++|++..+...+
T Consensus 31 ~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 31 LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcC
Q 013459 401 GTAREMLG 408 (442)
Q Consensus 401 a~~~~~~~ 408 (442)
+.|...+.
T Consensus 111 ~~~~~kl~ 118 (356)
T PLN03088 111 KECDEKIA 118 (356)
T ss_pred HHHHHHHH
Confidence 88876663
No 131
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.85 E-value=7.8e-08 Score=77.58 Aligned_cols=98 Identities=19% Similarity=0.111 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 399 (442)
+-...+.+.+|..++..|+|++|+..|++++...|+. ..+...++.+++..|++++|+..++.. .-.+..+.++..
T Consensus 45 ~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~ 123 (145)
T PF09976_consen 45 PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAEL 123 (145)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHH
Confidence 4456788899999999999999999999999987665 457888999999999999999999773 334455778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 013459 400 RGTAREMLGYYKEAIEDFSYAL 421 (442)
Q Consensus 400 ~a~~~~~~~~~~~A~~~~~~~l 421 (442)
+|.+|...|++++|++.|++++
T Consensus 124 ~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 124 LGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999999874
No 132
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.85 E-value=1.5e-07 Score=70.55 Aligned_cols=101 Identities=26% Similarity=0.271 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----VKAYLRRGT 402 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~a~ 402 (442)
..+-..|..+...|+.++|++.|.+++.+-|+.+.+|+++++.+.-.|+.++|+.++.+++++.-.. ..++...|.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3455668888899999999999999999999999999999999999999999999999999997544 457888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTN 427 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~ 427 (442)
+|..+|+-+.|...|+.+-++....
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCCHH
Confidence 9999999999999999988876543
No 133
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.85 E-value=8.9e-09 Score=93.31 Aligned_cols=105 Identities=20% Similarity=0.136 Sum_probs=77.2
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
+...|.+......++..+...|+++++.+.++...+..|+++..+..+|.++..+|++++|+.+|+++++.+|+++..+.
T Consensus 173 l~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~ 252 (280)
T PF13429_consen 173 LELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLL 252 (280)
T ss_dssp HHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccc
Confidence 34458888899999999999999999999999998888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
.+|.++...|++++|.+.++++++.
T Consensus 253 ~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 253 AYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHT------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999988754
No 134
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.82 E-value=2.2e-08 Score=92.24 Aligned_cols=69 Identities=19% Similarity=0.133 Sum_probs=66.4
Q ss_pred hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 355 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA---YLRRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 355 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
.+|+++.+++++|.+|+++|+|++|+..|+++++++|++.++ |+++|.+|..+|++++|++++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999865 999999999999999999999999997
No 135
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=5.3e-08 Score=81.16 Aligned_cols=107 Identities=24% Similarity=0.350 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--------CCC----------CHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGN----------NATYYSNRAAAYLESGSFLQAEADCTK 385 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~ 385 (442)
....++.+.|+.+|+.|+|.||...|..|+.. .|. ....+.+.++|++..++|-++++++..
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 45567899999999999999999999998753 333 345678999999999999999999999
Q ss_pred HHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 386 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 430 (442)
.+..+|.|..++|..|.+....=+.++|...|+++++++|.-...
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999999999999999999999999999975543
No 136
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.80 E-value=9.1e-08 Score=97.48 Aligned_cols=111 Identities=13% Similarity=-0.045 Sum_probs=76.0
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 399 (442)
...|........+...+...|++++|+.++++++...|.....+..+|.++..+|+|++|++.|+++++.+|+++++++.
T Consensus 62 ~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~g 141 (822)
T PRK14574 62 KAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISG 141 (822)
T ss_pred hhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 33344432233666777777777777777777773333334444444667777788888888888888888877777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459 400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 430 (442)
++.++.+.++.++|++.++++...+|++...
T Consensus 142 La~~y~~~~q~~eAl~~l~~l~~~dp~~~~~ 172 (822)
T PRK14574 142 MIMTQADAGRGGVVLKQATELAERDPTVQNY 172 (822)
T ss_pred HHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence 7777777788888888888877777775554
No 137
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.80 E-value=2e-07 Score=91.30 Aligned_cols=116 Identities=20% Similarity=0.182 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
...+.+...|+.++..|++++|++.+.++|+.+|.++.+|+.+|.+|.++|+.+++...+-.|-.++|.+.+.|..++..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 404 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 404 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
..++|++++|.-+|.++++.+|.+.........+.+
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~ 252 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQ 252 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 999999999999999999999999887766666654
No 138
>PRK11906 transcriptional regulator; Provisional
Probab=98.76 E-value=2.1e-07 Score=85.99 Aligned_cols=110 Identities=14% Similarity=-0.048 Sum_probs=100.1
Q ss_pred ccchHHHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 013459 320 FNQKQSAEIAKEKGNQAYKD---------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 390 (442)
.-+|..+.++..+|.+++.. .+-.+|.++.+++++++|.|+.++..+|.++...++++.|+..|++++.++
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~ 368 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS 368 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence 44577888888888888764 356789999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 391 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
|+...+|+..|.+....|+.++|.+.++++++++|....
T Consensus 369 Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 369 TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 999999999999999999999999999999999996543
No 139
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=5.4e-08 Score=93.17 Aligned_cols=109 Identities=16% Similarity=0.073 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 405 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 405 (442)
+.+.+.+|...+++++|+++.++++..++++|-....|+.+|.|..++++++.|.++|.+++.++|++.++|.+++.+|.
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 33445555556778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459 406 MLGYYKEAIEDFSYALVLEPTNKRASLSA 434 (442)
Q Consensus 406 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 434 (442)
..++..+|...++++++.+-++...|.+.
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENy 593 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNYQHWQIWENY 593 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCCCeeeech
Confidence 99999999999999999987776666554
No 140
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=5.5e-08 Score=88.01 Aligned_cols=116 Identities=22% Similarity=0.152 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
-++.++.+.|+..+.+|+++.|.+.|.+++..+.....++++.|..+..+|+.++|+.+|-++-.+--++.+.++.++.+
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qiani 567 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANI 567 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35566777888889999999999999999999998999999999999999999999999998877777889999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 404 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 404 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
|..+.+..+|++.+.++..+-|+++.+...++.+..
T Consensus 568 ye~led~aqaie~~~q~~slip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSLIPNDPAILSKLADLYD 603 (840)
T ss_pred HHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh
Confidence 999999999999999999999999999999988764
No 141
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.73 E-value=1.3e-07 Score=88.91 Aligned_cols=105 Identities=12% Similarity=-0.016 Sum_probs=94.7
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH----HH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV----KA 396 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~ 396 (442)
..|.....+..+|..+..+|++++|+..++++++++|++..++..+|.++...|++++|+.++++++...|.++ ..
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~ 188 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN 188 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence 34667778888999999999999999999999999999999999999999999999999999999999876432 35
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 397 YLRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
++.++.++...|++++|...|++++...|
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 66899999999999999999999987766
No 142
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.71 E-value=1.4e-07 Score=89.16 Aligned_cols=112 Identities=17% Similarity=0.133 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 406 (442)
..++..+.-.+..++|...++..+.+++.+|++.+.....|..+..+|+-++|....+.+++.++.++-.|+-+|.++..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 34555555555666666666666666666666666555566666666666666666666666666556666666666666
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 407 LGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 407 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
..+|++|+++|+.|+.++|+|..++.-+.-+.
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQ 119 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 66666666666666666666665555555443
No 143
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.70 E-value=1.9e-07 Score=94.26 Aligned_cols=117 Identities=9% Similarity=-0.061 Sum_probs=91.5
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH------
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV------ 394 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~------ 394 (442)
-.|.+..++..+...+...+++++|++..+.+++.+|+...+|+.+|.++++.+++.++... .++...+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 34777888888888888888888888888888888888888888888888888776666555 5555444444
Q ss_pred -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 395 -------------KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 395 -------------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
.+++.+|.||.++|++++|.+.|+++++++|+|+.+.++++....
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 788888888888888888888888888888888888877776543
No 144
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=9e-08 Score=89.08 Aligned_cols=119 Identities=16% Similarity=0.027 Sum_probs=111.9
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
....|+.+-.|+..|..|+..+++.+|.++|.|+-.++|....+|..+|..+.-.+..++|+..|..|-++-|..+...+
T Consensus 305 V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L 384 (611)
T KOG1173|consen 305 VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL 384 (611)
T ss_pred HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH
Confidence 34458899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
.+|.-|..+++++.|.+.|.+++.+.|.++-....++.+
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvv 423 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVV 423 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhhe
Confidence 999999999999999999999999999999888777654
No 145
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.70 E-value=2e-07 Score=77.41 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=89.0
Q ss_pred HHHhcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHcCC
Q 013459 335 QAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGTAREMLGY 409 (442)
Q Consensus 335 ~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~ 409 (442)
-++-..+|..+...+.+.++.++.+ ...++.+|.++..+|++++|+..|++++.+.|+. ..+++++|.++...|+
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~ 87 (168)
T CHL00033 8 DNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE 87 (168)
T ss_pred ccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC
Confidence 3455566778888887776666655 5677999999999999999999999999887653 4589999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 410 YKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 410 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+++|+++++++++++|.+...+..++.+..
T Consensus 88 ~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 88 HTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 999999999999999999998888777664
No 146
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.70 E-value=3.2e-07 Score=93.54 Aligned_cols=115 Identities=14% Similarity=0.112 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
+.....+..+|..+...|+|++|++.|+++++.+|+++.++..++..+.+.++.++|++.++++...+|.+... ..++.
T Consensus 99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~lay 177 (822)
T PRK14574 99 NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSY 177 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHH
Confidence 34455666668899999999999999999999999999999999999999999999999999999999986554 44566
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
++...+++.+|++.++++++.+|++.++...+-.+.
T Consensus 178 L~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l 213 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEIL 213 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 666677887799999999999999999876665544
No 147
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.70 E-value=1.6e-07 Score=92.71 Aligned_cols=120 Identities=19% Similarity=0.166 Sum_probs=108.9
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-HH
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-VK 395 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~ 395 (442)
..++.++.++..+++.++-.++|+.+..++..++...-.. ++.+|.+|.+|..+|+|++|.++|.++++.++++ .-
T Consensus 264 ~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l 343 (1018)
T KOG2002|consen 264 KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL 343 (1018)
T ss_pred hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc
Confidence 3446788999999999999999999999999999876433 4669999999999999999999999999999998 67
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
.++.+|+.|...|+++.|..+|++.++..|++.+....++.+..
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 88999999999999999999999999999999999888887753
No 148
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=1.3e-06 Score=76.16 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 407 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 407 (442)
.-.++|.||++.|.+.+|.+.++.+++..| .++.+..++.+|....+++.|+..+...+...|.+...+...+.++..+
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 344789999999999999999999998876 5677888999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChH
Q 013459 408 GYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 408 ~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
+++++|.++|+.+++++|.|-+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvE 325 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVE 325 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccce
Confidence 9999999999999999886544
No 149
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=9.8e-07 Score=80.14 Aligned_cols=135 Identities=13% Similarity=0.026 Sum_probs=105.3
Q ss_pred HHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHH
Q 013459 301 ASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 380 (442)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~ 380 (442)
+.+++...+..+..+.... -|.++..+..+|..|-+.|+-.+|.+++.......|-+.+....++..|....-+++|+
T Consensus 569 e~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai 646 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAI 646 (840)
T ss_pred HHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHH
Confidence 3344444444444333222 26667777888888888888888888888888888888888888888888888899999
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 381 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 381 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
.+|+++..+.|+...-....+.|+.+.|+|++|...|+...+..|++-+....+-++
T Consensus 647 ~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 647 NYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 999999988898777667779999999999999999999999999988877666554
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.64 E-value=3.5e-07 Score=84.89 Aligned_cols=97 Identities=19% Similarity=0.197 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 406 (442)
+....++..++..++..+|++.++++++.+|.+...+...+..+++.++++.|++..+++.++.|.+.+.|+.|+.+|..
T Consensus 201 ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~ 280 (395)
T PF09295_consen 201 EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ 280 (395)
T ss_pred cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 35566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhh
Q 013459 407 LGYYKEAIEDFSYALVL 423 (442)
Q Consensus 407 ~~~~~~A~~~~~~~l~~ 423 (442)
+|++++|+..++.+--.
T Consensus 281 ~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 281 LGDFENALLALNSCPML 297 (395)
T ss_pred cCCHHHHHHHHhcCcCC
Confidence 99999999888765444
No 151
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=2.9e-07 Score=75.53 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=103.4
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
+.+.+..++++|..|-..|-+.-|.-.|.+++.+.|+.+.+++.+|..+...|+|+.|...|...++++|.+.-++.+.|
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg 140 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 140 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
..++--|+|+-|.+.+.+-.+-+|+++-
T Consensus 141 i~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 141 IALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred eeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 9999999999999999999999999884
No 152
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.62 E-value=1.1e-07 Score=67.72 Aligned_cols=63 Identities=29% Similarity=0.385 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 361 TYYSNRAAAYLESGSFLQAEADCTKAINLD-------KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
.++.++|.+|..+|+|++|+.+|++++.+. |....+++++|.++..+|++++|++++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 334444444444444444444444444321 111234445555555555555555555555443
No 153
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.62 E-value=5.8e-07 Score=85.96 Aligned_cols=114 Identities=11% Similarity=-0.022 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhcCCccH--HHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY--SNRAAAYLESGSFLQAEADCTKAINLDKKNV--KAYLR 399 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~ 399 (442)
.+...+...+..+...|++++|++.++++++..|++.... ..+.......++.+.+++.++++++.+|+++ ..+..
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s 340 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA 340 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 5778899999999999999999999999999999987532 2233344456889999999999999999999 88889
Q ss_pred HHHHHHHcCCHHHHHHHHH--HHHhhCCCChHHHHHHHHHH
Q 013459 400 RGTAREMLGYYKEAIEDFS--YALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 400 ~a~~~~~~~~~~~A~~~~~--~~l~~~p~~~~~~~~l~~~~ 438 (442)
+|.++.+.|++++|.++|+ ++++..|++.... .++.+.
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll 380 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAF 380 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHH
Confidence 9999999999999999999 6888889877644 655554
No 154
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.61 E-value=8.5e-07 Score=86.16 Aligned_cols=70 Identities=26% Similarity=0.270 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459 359 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|+..|++++.++|.++.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 334444555555667788888888888888888 5778888888888888888888888888888888764
No 155
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.61 E-value=6.8e-07 Score=86.29 Aligned_cols=115 Identities=22% Similarity=0.097 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 405 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 405 (442)
...|...+..+.+.++-++|-.++.++-.++|.....|+.+|.++...|++++|.+.|.-++.++|+++.....+|.++.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 45677788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHH--HHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 406 MLGYYKEAIE--DFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 406 ~~~~~~~A~~--~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
+.|+..-|.+ .+..+++++|.|+++|.+++.+.+.
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK 766 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 9999888887 9999999999999999999998764
No 156
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.2e-07 Score=82.35 Aligned_cols=117 Identities=26% Similarity=0.328 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA------------TYYSNRAAAYLESGSFLQAEADCTKAINLD 390 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 390 (442)
+.+..+++.+|.+++-..+.+.|+.+|++++.++|++. ..+...|.-.++.|+|..|.+.|..+|.++
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 56788999999999999999999999999999999863 346678888999999999999999999999
Q ss_pred Ccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 391 KKN----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 391 p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
|++ ...|++++.+...+|+.++|+..++.++++++.--.++...+.|.-
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 987 4568889999999999999999999999999988777776666653
No 157
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.59 E-value=8.7e-07 Score=84.64 Aligned_cols=107 Identities=20% Similarity=0.178 Sum_probs=93.3
Q ss_pred ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--------NNATYYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
....+|..+..+.++|..|.+.|+|++|..++++++++.. +-...+.+++.++..++++++|+.++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3567789999999999999999999999999999998742 23567888999999999999999999999876
Q ss_pred C-----Cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 390 D-----KK---NVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 390 ~-----p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
. ++ -...+-++|.+|..+|+|++|.+.++++++..
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 3 22 35688899999999999999999999999875
No 158
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.59 E-value=8.5e-08 Score=68.23 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=59.4
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC---C----CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---G----NNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 390 (442)
.|..+..+..+|.++...|+|++|+.+|++++++. + ....++.++|.++..+|++++|++++++++++.
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 36778899999999999999999999999999762 1 225688999999999999999999999999863
No 159
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.59 E-value=3e-06 Score=72.50 Aligned_cols=120 Identities=22% Similarity=0.139 Sum_probs=94.4
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhc-----------CHHHHHHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESG-----------SFLQAEADCT 384 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~-----------~~~~A~~~~~ 384 (442)
-...+...++.+.+|..+++.++|++|+..|++.++..|+++ .+++.+|.+++.+. ...+|+..|+
T Consensus 35 ~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~ 114 (203)
T PF13525_consen 35 YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFE 114 (203)
T ss_dssp -TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHH
Confidence 334466778899999999999999999999999999999874 68889999887653 3468999999
Q ss_pred HHHhcCCccHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 385 KAINLDKKNVK-----------------AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 385 ~~l~~~p~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
..++..|++.. --+..|..|.+.|.|..|+..++.+++..|+.......+..+.
T Consensus 115 ~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~ 185 (203)
T PF13525_consen 115 ELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLA 185 (203)
T ss_dssp HHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence 99999997622 2344688899999999999999999999999988766555443
No 160
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.1e-06 Score=76.64 Aligned_cols=97 Identities=21% Similarity=0.103 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 013459 342 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY---YKEAIEDFS 418 (442)
Q Consensus 342 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~ 418 (442)
.++.+.-++.-+..+|+|..-|..+|.+|+.+|++..|...|++++++.|+|++.+..+|.+++...+ -.++.+.|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 34455667778899999999999999999999999999999999999999999999999998765443 468999999
Q ss_pred HHHhhCCCChHHHHHHHHHH
Q 013459 419 YALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 419 ~~l~~~p~~~~~~~~l~~~~ 438 (442)
+++.++|+|..+...++.-.
T Consensus 218 ~al~~D~~~iral~lLA~~a 237 (287)
T COG4235 218 QALALDPANIRALSLLAFAA 237 (287)
T ss_pred HHHhcCCccHHHHHHHHHHH
Confidence 99999999999988887643
No 161
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.58 E-value=2.7e-06 Score=68.28 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRG 401 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~a 401 (442)
..+-.+.+|+.+...|+|.||..+|++++. +.-+++..+..+++..+..+++.+|...++++.+.+|.. +..+..+|
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 345677899999999999999999999986 567888999999999999999999999999999999864 67888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNK 428 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~ 428 (442)
..|..+|++++|...|+.++...|+-.
T Consensus 168 R~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 999999999999999999999998754
No 162
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=3.9e-06 Score=73.27 Aligned_cols=116 Identities=24% Similarity=0.255 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 397 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 397 (442)
.....++..+-..|.+..+|++|++..++..++.++. ...|..++..+....+.+.|+..+.++++-+|.+..+-
T Consensus 138 efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAs 217 (389)
T COG2956 138 EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRAS 217 (389)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehh
Confidence 3455678889999999999999999999999998875 46788899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHH
Q 013459 398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNK-RASLSADRLR 438 (442)
Q Consensus 398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~ 438 (442)
..+|.++...|+|+.|++.++.+++.+|+.- ++...+..+.
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999753 3444444444
No 163
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.3e-06 Score=78.59 Aligned_cols=117 Identities=18% Similarity=0.042 Sum_probs=99.3
Q ss_pred hHHHHHHHHHH-HHH-HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 323 KQSAEIAKEKG-NQA-YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 323 ~~~~~~~~~~a-~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
+.+++.+..+| .++ ....--++|.+++++++.++|.+..+...++.++...|.++.+++.+++.+...|+. ..+..+
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~L 477 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHL 477 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHH
Confidence 34445555553 222 233445779999999999999999999999999999999999999999999988864 566779
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
|.++...+.+++|..+|.+++.++|++......+.++++.
T Consensus 478 gd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 478 GDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998875
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.53 E-value=8.3e-07 Score=73.92 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA 434 (442)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 434 (442)
....+++.+|.++...|++++|+.+|++++...|+. ..+++.+|.++..+|++++|+++++++++.+|++...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 456788999999999999999999999999887653 46899999999999999999999999999999999888777
Q ss_pred HHHH
Q 013459 435 DRLR 438 (442)
Q Consensus 435 ~~~~ 438 (442)
+.+.
T Consensus 113 g~~~ 116 (172)
T PRK02603 113 AVIY 116 (172)
T ss_pred HHHH
Confidence 7665
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.52 E-value=1.1e-06 Score=64.59 Aligned_cols=77 Identities=32% Similarity=0.414 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
+++.+|.++...|++++|+..++++++..|.+..+++.+|.++...+++++|.+.|++++...|.+...+..++.+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999987776666554
No 166
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.52 E-value=7.9e-07 Score=84.93 Aligned_cols=105 Identities=14% Similarity=0.060 Sum_probs=92.2
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-- 389 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-- 389 (442)
...|....+...++..|..+|+|+.|+..++++++. .|.-......+|.+|..+++|.+|+..|++++.+
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 344778888888999999999999999999999998 5555666677999999999999999999999976
Q ss_pred ------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 390 ------DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 390 ------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
+|....++.++|.+|.+.|+|++|..++++++++.
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 34556789999999999999999999999999874
No 167
>PRK11906 transcriptional regulator; Provisional
Probab=98.52 E-value=8.8e-06 Score=75.49 Aligned_cols=110 Identities=11% Similarity=0.010 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhcc---cHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHhc---------CHHHHHHHHHHHHhcCCc
Q 013459 328 IAKEKGNQAYKDK---QWLKAISFYTEAI---KLNGNNATYYSNRAAAYLESG---------SFLQAEADCTKAINLDKK 392 (442)
Q Consensus 328 ~~~~~a~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~~---------~~~~A~~~~~~~l~~~p~ 392 (442)
.++.+|...+.++ ..+.|+.+|.+++ +++|++..+|..++.||+..- +..+|....+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 3477777776554 5678999999999 999999999999999998761 466888999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 393 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
|+.+++.+|.++...++++.|...|++++.++|+.+.++...+.+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~ 381 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV 381 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887764
No 168
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.50 E-value=1.6e-06 Score=67.30 Aligned_cols=75 Identities=13% Similarity=0.073 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 397 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 397 (442)
+.....++.+|.++++.++|++|+..|++++..+|++ ..+++.+|.++.+++++++|+..++++++..|++..+.
T Consensus 36 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 36 TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 3446788999999999999999999999999998875 67899999999999999999999999999999886643
No 169
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.47 E-value=2.7e-06 Score=81.02 Aligned_cols=105 Identities=12% Similarity=0.046 Sum_probs=82.7
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.+.++......+..+...|+.++|...++++++. +.++.....++.+ ..++++++++.+++.++.+|+++..++.+|
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lg 335 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLG 335 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 3556777888888888888888888888888884 4455544444443 348888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
.++...+++++|.++|+++++..|++..
T Consensus 336 rl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 336 QLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 8888888888888888888888888765
No 170
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.47 E-value=7.2e-06 Score=78.45 Aligned_cols=107 Identities=12% Similarity=0.051 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
|.....+...|..+.++|++++|..+++++.+..|++. .+...++.++.+.|++++|...+++.++.+|+++.++..++
T Consensus 115 ~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~ 194 (409)
T TIGR00540 115 AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAE 194 (409)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 33444566678888888888888888888888877764 45555688888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
.++.+.|++++|.+.+++..+....++.
T Consensus 195 ~~~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 195 EAYIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 8888888888888888888877554444
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.46 E-value=4.8e-07 Score=65.30 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 386 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 386 (442)
+...++.+|.++++.|+|++|+..+++ .+.++.+....+.+|.|++++|++++|++.|+++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 566788899999999999999999999 8888888899999999999999999999999875
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.45 E-value=1.2e-05 Score=78.37 Aligned_cols=113 Identities=13% Similarity=0.036 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhc--CC
Q 013459 325 SAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--------SFLQAEADCTKAINL--DK 391 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~~l~~--~p 391 (442)
.+-.++.+|..++... ++.+|+.+|+++++++|++..++..++.+|.... +..++.+..++++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 4556777888887654 4889999999999999999999999998886653 345666667776664 67
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 392 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
.++.++.-+|..+...|++++|..+++++++++| +..++..++++.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~ 463 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVY 463 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 7788899999999999999999999999999999 477888887765
No 173
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.44 E-value=4.1e-06 Score=78.78 Aligned_cols=103 Identities=18% Similarity=0.128 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-------------------------------------HHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-------------------------------------TYYSNRAAA 369 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------------------------~~~~~~~~~ 369 (442)
+..+..+..++..|++++|...++++++.+|++. ..+..+|.+
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 123 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG 123 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence 3444556666666666666666666666655544 333456678
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459 370 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 370 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
+..+|++++|+..++++++++|++..++..+|.++.+.|++++|+.++++++...|.++.
T Consensus 124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~ 183 (355)
T cd05804 124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSM 183 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcc
Confidence 888899999999999999999999989999999999999999999999999998875443
No 174
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=5.6e-06 Score=74.58 Aligned_cols=120 Identities=16% Similarity=0.167 Sum_probs=96.6
Q ss_pred ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH---------------------------
Q 013459 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY--------------------------- 370 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~--------------------------- 370 (442)
....-+.+...+..+|.+++..|++.+|+..|+++..++|.+....-..|.++
T Consensus 224 ~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~w 303 (564)
T KOG1174|consen 224 DNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHW 303 (564)
T ss_pred hhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhh
Confidence 33444778889999999999999999999999999999988654443333333
Q ss_pred -------HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 371 -------LESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 371 -------~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
+..++++.|+.+-+++++.+|.+.+++...|.++.++++.++|+-.|+.+..+.|..-+.+..+-++
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4455788888888899999999999999999999999999999999999999988877766655443
No 175
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.43 E-value=3.3e-06 Score=80.20 Aligned_cols=104 Identities=13% Similarity=-0.002 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 407 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 407 (442)
+|+.-+....-+++.++|+++++++++.+|+....|..+|+++.++++.+.|...|...++.-|+.+..|..++.+-.+.
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 33333444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHH
Q 013459 408 GYYKEAIEDFSYALVLEPTNKRAS 431 (442)
Q Consensus 408 ~~~~~A~~~~~~~l~~~p~~~~~~ 431 (442)
|+.-.|...++++...+|++...|
T Consensus 733 ~~~~rAR~ildrarlkNPk~~~lw 756 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKNPKNALLW 756 (913)
T ss_pred cchhhHHHHHHHHHhcCCCcchhH
Confidence 444444444444444444444443
No 176
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=5.1e-06 Score=73.33 Aligned_cols=131 Identities=15% Similarity=0.078 Sum_probs=85.0
Q ss_pred HHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh--------------hCC-----------
Q 013459 303 LQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK--------------LNG----------- 357 (442)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------------~~p----------- 357 (442)
+.++.++........+.++. .++.+.++|.+++-.|+|.||.....++-+ ++.
T Consensus 70 LgdY~~Al~~Y~~~~~~~~~--~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~L 147 (557)
T KOG3785|consen 70 LGDYEEALNVYTFLMNKDDA--PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSL 147 (557)
T ss_pred hccHHHHHHHHHHHhccCCC--CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 44455555444433332222 234566667777777777776665444321 110
Q ss_pred -CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459 358 -NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD 435 (442)
Q Consensus 358 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 435 (442)
+..+-...++-+++..-.|++|+..|.+++.-+|+......+++.||+++.-|+-+.+.+...++..|++..+.+.+.
T Consensus 148 qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 148 QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 011222344555555557888888898988888888888888999999999999999999999999999887765543
No 177
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.42 E-value=1.6e-05 Score=64.08 Aligned_cols=114 Identities=22% Similarity=0.078 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAY 397 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~ 397 (442)
..+...+......+..+++..+...+++.++.+|+. ..+.+.++.+++..|++++|+..|++++...|+. ..+.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 345556666777778999999999999999999988 5678889999999999999999999999987654 4588
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
+.++.++...|++++|+..++.. .-.+-.+.++..++.+.
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~ 128 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIY 128 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHH
Confidence 88999999999999999999763 33334445555555543
No 178
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.41 E-value=7e-06 Score=78.11 Aligned_cols=120 Identities=15% Similarity=0.066 Sum_probs=108.1
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 399 (442)
..+|.+.+.|+..-...+.+.+|++|..+|.++-...|. ...|+-.+.....+++.++|++.++++++..|+.+..|+.
T Consensus 612 ~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lm 690 (913)
T KOG0495|consen 612 EANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLM 690 (913)
T ss_pred HhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHH
Confidence 344778888998889999999999999999999987764 4677888888899999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
+|+++.++++.+.|...|...++..|.+...|..+.++...
T Consensus 691 lGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 691 LGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred HhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988754
No 179
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.40 E-value=8.6e-06 Score=73.30 Aligned_cols=105 Identities=15% Similarity=0.088 Sum_probs=86.7
Q ss_pred HHHHHHHHhcc--cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459 330 KEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 407 (442)
Q Consensus 330 ~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 407 (442)
...+.+.+..| ++++|...|++..+..+.++..++.++.|++++|+|++|.+.+++++..+|.+++++.++..+...+
T Consensus 169 La~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~ 248 (290)
T PF04733_consen 169 LAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHL 248 (290)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Confidence 33344555544 7999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred CCH-HHHHHHHHHHHhhCCCChHHHHHH
Q 013459 408 GYY-KEAIEDFSYALVLEPTNKRASLSA 434 (442)
Q Consensus 408 ~~~-~~A~~~~~~~l~~~p~~~~~~~~l 434 (442)
|+- +.+.+++.++...+|+++......
T Consensus 249 gk~~~~~~~~l~qL~~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 249 GKPTEAAERYLSQLKQSNPNHPLVKDLA 276 (290)
T ss_dssp T-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred CCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence 988 677789999999999988765544
No 180
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.39 E-value=5.6e-06 Score=78.66 Aligned_cols=116 Identities=11% Similarity=0.054 Sum_probs=94.0
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
..|+..+.+-..|..+...|+-++|..+...++..++.+...|.-+|.++...++|++|+++|+.|+.++|+|.+.|.-+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 55677777778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR 436 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 436 (442)
+....++++|+.....-.+.+++.|.....|..++.
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Av 151 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAV 151 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 888888888888888888888888877766655544
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.39 E-value=3.2e-05 Score=67.88 Aligned_cols=116 Identities=15% Similarity=0.043 Sum_probs=94.0
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhc---------------C---HHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESG---------------S---FLQAE 380 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~---------------~---~~~A~ 380 (442)
.+....+.+.+|..+++.++|++|+..+++.++.+|++ ..+++.+|.++..++ + ..+|+
T Consensus 65 s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~ 144 (243)
T PRK10866 65 GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF 144 (243)
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH
Confidence 34555678899999999999999999999999999887 467899998875554 1 35788
Q ss_pred HHHHHHHhcCCccH---HH--------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 381 ADCTKAINLDKKNV---KA--------------YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 381 ~~~~~~l~~~p~~~---~~--------------~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
+.|++.++..|+.. ++ -+..|.-|.+.|.|..|+.-++.+++..|+.+.....+..+
T Consensus 145 ~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l 218 (243)
T PRK10866 145 RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLM 218 (243)
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 99999999999762 22 23467779999999999999999999999887766555444
No 182
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.38 E-value=2.1e-06 Score=87.03 Aligned_cols=104 Identities=14% Similarity=0.031 Sum_probs=86.5
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-------------------HHHHHHHHHHHHHhcCHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------------------ATYYSNRAAAYLESGSFLQA 379 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------------------~~~~~~~~~~~~~~~~~~~A 379 (442)
....|+....++..|..+++.+++.++... .++...+.+ ..+++.+|.||-++|++++|
T Consensus 58 l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka 135 (906)
T PRK14720 58 LKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKL 135 (906)
T ss_pred HHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHH
Confidence 444577788888888888887777766555 555544444 48999999999999999999
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 380 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 380 ~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
...|+++++++|+|+.++.++|..|... +.++|++++.+++...-
T Consensus 136 ~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 136 KGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 99999999999887643
No 183
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=2e-06 Score=82.69 Aligned_cols=107 Identities=15% Similarity=0.120 Sum_probs=100.4
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
..-+|-....|+..|.++.+.++++.|.+.|.+++.++|++..+|++++..|.+.++-++|...+.++++.+-.+...|-
T Consensus 512 l~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWE 591 (777)
T KOG1128|consen 512 LEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWE 591 (777)
T ss_pred hhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeee
Confidence 34447778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
|+-.+..+.|++++|++.+.+.+.+..
T Consensus 592 Nymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 592 NYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred chhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 999999999999999999999887643
No 184
>PRK15331 chaperone protein SicA; Provisional
Probab=98.33 E-value=3.4e-06 Score=67.13 Aligned_cols=88 Identities=11% Similarity=0.056 Sum_probs=79.8
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 013459 352 AIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS 431 (442)
Q Consensus 352 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 431 (442)
+..+.++..+..+..|.-+++.|++++|...|+-+..++|.+++.|+.+|.|+..+++|++|+..|..+..++++++...
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 34455566778889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHh
Q 013459 432 LSADRLRK 439 (442)
Q Consensus 432 ~~l~~~~~ 439 (442)
...+.|.-
T Consensus 109 f~agqC~l 116 (165)
T PRK15331 109 FFTGQCQL 116 (165)
T ss_pred chHHHHHH
Confidence 88888763
No 185
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.31 E-value=3.3e-07 Score=80.44 Aligned_cols=99 Identities=32% Similarity=0.451 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 407 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 407 (442)
-....+...+..|.+++|+++|..+|.++|.....|..++.++++++++..|+.+|..++.++|+....|-..+.+...+
T Consensus 116 e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll 195 (377)
T KOG1308|consen 116 DKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL 195 (377)
T ss_pred HHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence 44455677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 013459 408 GYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 408 ~~~~~A~~~~~~~l~~~p~ 426 (442)
|++++|.+++..+.+++-+
T Consensus 196 g~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 196 GNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hchHHHHHHHHHHHhcccc
Confidence 9999999999999998754
No 186
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.31 E-value=1.7e-06 Score=53.50 Aligned_cols=40 Identities=30% Similarity=0.273 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459 396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD 435 (442)
Q Consensus 396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 435 (442)
+++.+|.+|..+|++++|++.|+++++.+|+|+.++..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4444455555555555555555555555555555444443
No 187
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.30 E-value=1.7e-06 Score=53.57 Aligned_cols=42 Identities=24% Similarity=0.210 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
.++..+|.+|..+|++++|++.|+++++.+|+++++|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456666777777777777777777777777777777766654
No 188
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=1.5e-05 Score=64.81 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
....-.|.++|.++++.+.++.|+....++|+++|.+..++.+++.+|.++..|++|+.+|.+.+..+|.+.++.-....
T Consensus 131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 34556788999999999999999999999999999999999999999999999999999999999999998887766666
Q ss_pred HHHHcCCHHH
Q 013459 403 AREMLGYYKE 412 (442)
Q Consensus 403 ~~~~~~~~~~ 412 (442)
+--...+..+
T Consensus 211 l~~~i~ernE 220 (271)
T KOG4234|consen 211 LPPKINERNE 220 (271)
T ss_pred cCHHHHHHHH
Confidence 5544444433
No 189
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.29 E-value=3.5e-05 Score=65.86 Aligned_cols=113 Identities=18% Similarity=0.146 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH---HH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK---AY 397 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~ 397 (442)
..+..+++.|...++.|+|++|+..|+++...+|.. ..+...++.++++.+++++|+...++-+++.|.+++ ++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 456789999999999999999999999999988765 578889999999999999999999999999987754 67
Q ss_pred HHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459 398 LRRGTAREMLGY--------YKEAIEDFSYALVLEPTNKRASLSADR 436 (442)
Q Consensus 398 ~~~a~~~~~~~~--------~~~A~~~~~~~l~~~p~~~~~~~~l~~ 436 (442)
|..|.+++..=+ ..+|...|++.++..|++.-+.....+
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~ 158 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR 158 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 778888754322 357889999999999998755444333
No 190
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=2.2e-05 Score=73.17 Aligned_cols=103 Identities=13% Similarity=0.009 Sum_probs=93.5
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHH
Q 013459 334 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 413 (442)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A 413 (442)
..+...+++++|+..+++..+.+|+ +...++.++...++..+|++.+.++++.+|.+.+.+...+..+.+.++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3444567899999999999988875 5566899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 414 IEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 414 ~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
++..+++.++.|++-..|..|+++.-
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi 279 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYI 279 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 99999999999999999999998864
No 191
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.27 E-value=3.6e-05 Score=73.32 Aligned_cols=106 Identities=10% Similarity=0.021 Sum_probs=90.6
Q ss_pred HHHHHH-HHHHHhcccHHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459 327 EIAKEK-GNQAYKDKQWLKAISFYTEAIKLNGNNATYY-SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404 (442)
Q Consensus 327 ~~~~~~-a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 404 (442)
..++.+ +....+.|++++|..+|.++.+.+|++..+. ...+..+...|++++|++.++++.+.+|+++.++..++.+|
T Consensus 118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~ 197 (398)
T PRK10747 118 VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAY 197 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 344444 6666999999999999999999999875433 34589999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 013459 405 EMLGYYKEAIEDFSYALVLEPTNKRASL 432 (442)
Q Consensus 405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 432 (442)
...|++++|.+.+.+..+..+.++....
T Consensus 198 ~~~gdw~~a~~~l~~l~k~~~~~~~~~~ 225 (398)
T PRK10747 198 IRTGAWSSLLDILPSMAKAHVGDEEHRA 225 (398)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999999999988877655444
No 192
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.25 E-value=1.6e-05 Score=71.56 Aligned_cols=116 Identities=16% Similarity=-0.011 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--SFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.+.+.......++++.++++.|.+.++.+-+.+.+..-.....+.+.+..| ++++|...|+......+.++..+..++
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 345556667889999999999999999998887765544444555666666 599999999999888888999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
.++..+|++++|.+.++++++.+|++++...++..+..
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL 246 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999998888766643
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.22 E-value=2.3e-05 Score=60.00 Aligned_cols=77 Identities=19% Similarity=0.068 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHH
Q 013459 361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK---NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT---NKRASLSA 434 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l 434 (442)
.+.+.++.++-.+|+.++|+.+|++++..... ..+++..+|..+..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 56789999999999999999999999987533 3679999999999999999999999999999998 55555544
Q ss_pred HHH
Q 013459 435 DRL 437 (442)
Q Consensus 435 ~~~ 437 (442)
+.+
T Consensus 82 Al~ 84 (120)
T PF12688_consen 82 ALA 84 (120)
T ss_pred HHH
Confidence 433
No 194
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.21 E-value=4.8e-05 Score=61.27 Aligned_cols=80 Identities=24% Similarity=0.146 Sum_probs=61.6
Q ss_pred cchHHHHHHHHHHHHHHhc----------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-----------HHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKD----------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-----------FLQA 379 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-----------~~~A 379 (442)
.+|.+++.+++.|..+... ..+++|+.-|++++.++|+..++++.+|++|..++. |++|
T Consensus 20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 3478888888888888765 346778999999999999999999999999988763 8899
Q ss_pred HHHHHHHHhcCCccHHHHHHH
Q 013459 380 EADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 380 ~~~~~~~l~~~p~~~~~~~~~ 400 (442)
..+|+++...+|+|..++..+
T Consensus 100 ~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 100 TEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHH
Confidence 999999999999986655443
No 195
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.17 E-value=1.8e-06 Score=49.71 Aligned_cols=32 Identities=38% Similarity=0.429 Sum_probs=17.8
Q ss_pred HHHHHhcCCccHHHHHHHHHHHHHcCCHHHHH
Q 013459 383 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 414 (442)
Q Consensus 383 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~ 414 (442)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555553
No 196
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.17 E-value=9.5e-06 Score=80.70 Aligned_cols=110 Identities=17% Similarity=0.175 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 406 (442)
..|..+|..|.+.+++.+|+..|+.++..+|.+...|..+|.+|...|+|..|++.|.++..++|.+.-..|..+.+...
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 34566888899999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459 407 LGYYKEAIEDFSYALVLEPTNKRASLSADR 436 (442)
Q Consensus 407 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 436 (442)
+|+|.+|+..++..+.........+..++.
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE 672 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAE 672 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 999999999888887766554444444443
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.16 E-value=3.3e-05 Score=68.29 Aligned_cols=73 Identities=14% Similarity=0.067 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA 396 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 396 (442)
....+++.+|..|+..|+|++|+..|+++++.+|++ +++++.+|.++..+|++++|.+.|+++++..|+...+
T Consensus 178 ~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 178 YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 346789999999999999999999999999998874 7899999999999999999999999999999988654
No 198
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.16 E-value=8.2e-05 Score=72.11 Aligned_cols=99 Identities=15% Similarity=0.037 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 405 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 405 (442)
.-.++.+|..|-..|++++|+++++++|+..|...+.|...|.++-+.|++++|...++.+..++..+.-.....+..+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 35668889999999999999999999999999999999999999999999999999999999999999888888899999
Q ss_pred HcCCHHHHHHHHHHHHhhC
Q 013459 406 MLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 406 ~~~~~~~A~~~~~~~l~~~ 424 (442)
+.|+.++|.+.+..-.+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HCCCHHHHHHHHHhhcCCC
Confidence 9999999999887654443
No 199
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.15 E-value=2.1e-05 Score=78.38 Aligned_cols=120 Identities=21% Similarity=0.257 Sum_probs=100.4
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHH------------------------------------
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY------------------------------------ 362 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~------------------------------------ 362 (442)
+.-++..+.+|..+|..|...-+...|.++|.+|.++++.+..+
T Consensus 485 lrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~n 564 (1238)
T KOG1127|consen 485 LRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKEN 564 (1238)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhh
Confidence 33346777888888999988888889999999999888765333
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 363 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 363 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
|..+|..|...+++..|+.+|+.+++.+|.+.+.|..+|.+|...|+|..|++.|.++..++|.+.-.....+.++
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~e 640 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVME 640 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHH
Confidence 3456777777778999999999999999999999999999999999999999999999999999877766655554
No 200
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.15 E-value=3.9e-05 Score=59.82 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=67.5
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcC---------------HHHHHH
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGS---------------FLQAEA 381 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~---------------~~~A~~ 381 (442)
.-.+-..++...++..++++++|++|+..+++.|+++|.++ -+++.+|.+++.+.. ..+|..
T Consensus 41 P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~ 120 (142)
T PF13512_consen 41 PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFR 120 (142)
T ss_pred CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHH
Confidence 33345567889999999999999999999999999999875 588999999999887 899999
Q ss_pred HHHHHHhcCCccHHH
Q 013459 382 DCTKAINLDKKNVKA 396 (442)
Q Consensus 382 ~~~~~l~~~p~~~~~ 396 (442)
.|+++++..|++..+
T Consensus 121 ~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 121 DFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHCcCChhH
Confidence 999999999987543
No 201
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.13 E-value=2.7e-06 Score=49.00 Aligned_cols=34 Identities=47% Similarity=0.658 Sum_probs=31.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 013459 348 FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381 (442)
Q Consensus 348 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~ 381 (442)
+|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999863
No 202
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.04 E-value=9.9e-06 Score=46.89 Aligned_cols=32 Identities=44% Similarity=0.636 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
++|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 203
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.03 E-value=1.4e-05 Score=46.20 Aligned_cols=33 Identities=48% Similarity=0.651 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013459 395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427 (442)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 427 (442)
++|+.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666654
No 204
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.03 E-value=4.7e-05 Score=68.83 Aligned_cols=104 Identities=26% Similarity=0.259 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCcc--
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--N----ATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKN-- 393 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~-- 393 (442)
...+..+.+.+.++ +..++++|+.+|++++++.-. + ...+..+|.+|... +++++|+++|++++.+....
T Consensus 72 ~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~ 150 (282)
T PF14938_consen 72 FEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS 150 (282)
T ss_dssp HHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 34455555555555 555999999999999987322 1 46788899999998 99999999999999874211
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013459 394 ----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427 (442)
Q Consensus 394 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 427 (442)
...+..+|.++..+++|++|++.|++.....-++
T Consensus 151 ~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 151 PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 4567788999999999999999999998765443
No 205
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.00 E-value=1.4e-05 Score=46.31 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 013459 361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 392 (442)
.+|+++|.+|..++++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45566666666666666666666666666664
No 206
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.96 E-value=9.5e-05 Score=66.86 Aligned_cols=105 Identities=19% Similarity=0.197 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc----
Q 013459 324 QSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---- 392 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---- 392 (442)
.-+..+..+|..|... +++++|+++|++++++...+ ...+...+.++.++++|++|+..|+++....-+
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 4577888999999999 99999999999999984322 356778899999999999999999998865321
Q ss_pred --c-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 013459 393 --N-VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428 (442)
Q Consensus 393 --~-~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 428 (442)
+ .+.++..+.|+...|+...|.+.+++....+|...
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 1 24566778899999999999999999999998543
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.96 E-value=0.00044 Score=55.77 Aligned_cols=97 Identities=23% Similarity=0.157 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC----------------------CHHHHHHHHHHHHHhcCHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----------------------NATYYSNRAAAYLESGSFLQAEADCT 384 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~ 384 (442)
..+...|......++.++++..+++++.+... ...+...++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 34445566667778888888888888887321 13455677888889999999999999
Q ss_pred HHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 385 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
+++..+|.+-.++..+-.+|..+|+..+|++.|+++.+.
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887543
No 208
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.91 E-value=3e-05 Score=44.77 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 013459 362 YYSNRAAAYLESGSFLQAEADCTKAINLDKK 392 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 392 (442)
+++.+|.+++++|++++|+++|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 209
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.001 Score=58.09 Aligned_cols=98 Identities=18% Similarity=0.184 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH---------------------
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK--------------------- 385 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~--------------------- 385 (442)
..-+..+......+++.+|...|..++...|++.++...++.||...|+.++|...+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 34455667777888888888888888888888888888888888888877666655542
Q ss_pred -------------HHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 386 -------------AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 386 -------------~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
.+..+|++.++-+.+|..+...|++++|.+.+-..++.+
T Consensus 215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 223379999999999999999999999999988887764
No 210
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.85 E-value=0.00011 Score=46.81 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459 395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 441 (442)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 441 (442)
+.+|.+|..+.++|+|++|.++++.+++++|+|..+......+++.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 46788888889999999999999999999999988888777776543
No 211
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=0.00012 Score=63.25 Aligned_cols=75 Identities=23% Similarity=0.212 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH---HHHHHH
Q 013459 363 YSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA---SLSADR 436 (442)
Q Consensus 363 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~l~~ 436 (442)
.|+.+.-+++.|+|.+|...|..-++..|+. ++++|+||.+++.+|+|++|...|..+.+-.|+++.+ ...++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6788999999999999999999999999986 6899999999999999999999999999999887755 444444
Q ss_pred H
Q 013459 437 L 437 (442)
Q Consensus 437 ~ 437 (442)
+
T Consensus 224 ~ 224 (262)
T COG1729 224 S 224 (262)
T ss_pred H
Confidence 4
No 212
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.00041 Score=65.72 Aligned_cols=90 Identities=17% Similarity=0.094 Sum_probs=72.0
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------------------
Q 013459 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD------------------- 390 (442)
Q Consensus 330 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------------------- 390 (442)
++.|.|.|+.++.++|+..++ ..++.+..+...++++++++++|++|+..|+.+.+.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 678888888888888888887 4556666677788888888888888888888774432
Q ss_pred -----------Cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013459 391 -----------KK-NVKAYLRRGTAREMLGYYKEAIEDFSYALV 422 (442)
Q Consensus 391 -----------p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 422 (442)
|+ ..+.+|+.+.++...|+|.+|++.+++++.
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 22 456789999999999999999999999944
No 213
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.00025 Score=61.56 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=88.8
Q ss_pred ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---------
Q 013459 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN--------- 388 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--------- 388 (442)
+.+..|.+-..+..+|.||+..++|.+|..+|++.-.+.|+........++.+++.+.+..|+........
T Consensus 36 ~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~l 115 (459)
T KOG4340|consen 36 ELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVL 115 (459)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHH
Confidence 34445666678888999999999999999999999999998887777778888888888777766543322
Q ss_pred -c--------------------CC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459 389 -L--------------------DK--KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD 435 (442)
Q Consensus 389 -~--------------------~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 435 (442)
+ -| +......+.|.+.++.|+|++|++-|+.+++...-++-...+++
T Consensus 116 qLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniA 185 (459)
T KOG4340|consen 116 QLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLA 185 (459)
T ss_pred HHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHH
Confidence 1 12 33456677788888888999999999998888776665544444
No 214
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=9.6e-05 Score=68.84 Aligned_cols=111 Identities=28% Similarity=0.285 Sum_probs=100.0
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCCccHHH
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES---GSFLQAEADCTKAINLDKKNVKA 396 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~l~~~p~~~~~ 396 (442)
.+-|+..+.++..|+-.+..+....|+.+|.++++..|+....+.+++.++++. |+.-.|+.++..+++++|...++
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence 445778888889999999999999999999999999999999999999999886 47788999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459 397 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 430 (442)
|+.++.++.+++++.+|+++...+....|.+...
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~ 481 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTDVAR 481 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhh
Confidence 9999999999999999999998888888855443
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.00062 Score=58.11 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHH---------------------
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCT--------------------- 384 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~--------------------- 384 (442)
.+.+.+++++.-.++|.-.+..+.+.++.+ |.++.....+|.+.++-|+.+.|..+|+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 344445555555555555555555555554 3344444455555555555555555554
Q ss_pred -------------------HHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 385 -------------------KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 385 -------------------~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
+.+..+|.++.+..+.|.|+..+|+..+|++.++.+++..|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 444445555555555555555555555555555555555554
No 216
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.80 E-value=0.00044 Score=67.17 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 405 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 405 (442)
.+.+...+.++...|++++|++++++....-.+....+..+|.++.++|++++|...|+.+++.+|+|...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 45667778899999999999999999888888888999999999999999999999999999999999999988888873
Q ss_pred Hc-----CCHHHHHHHHHHHHhhCCCChH
Q 013459 406 ML-----GYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 406 ~~-----~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
.. .+.+.-.+.|++..+..|....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~ 112 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDA 112 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccc
Confidence 22 2456677788888777776443
No 217
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.79 E-value=0.00072 Score=51.54 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHhc---CHHHHHHHHHHHHh-cCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459 359 NATYYSNRAAAYLESG---SFLQAEADCTKAIN-LDKK-NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 433 (442)
Q Consensus 359 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 433 (442)
.....++++.++.+.. +.++.+..++..++ -.|. ..+..|.++..++++++|++++++++.+++.+|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3456778888887765 47788999999986 4444 36788999999999999999999999999999999999888
Q ss_pred HHHHHhhh
Q 013459 434 ADRLRKVF 441 (442)
Q Consensus 434 l~~~~~~~ 441 (442)
...+++.+
T Consensus 111 k~~ied~i 118 (149)
T KOG3364|consen 111 KETIEDKI 118 (149)
T ss_pred HHHHHHHH
Confidence 87777654
No 218
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.78 E-value=0.00052 Score=61.84 Aligned_cols=111 Identities=14% Similarity=0.060 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHh-cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---HHHHH
Q 013459 324 QSAEIAKEKGNQAYK-DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV---KAYLR 399 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~ 399 (442)
....+|...|..-+. .++.+.|...|+++++..|.+...|......+...++.+.|...|++++..-+... ..|..
T Consensus 33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~ 112 (280)
T PF05843_consen 33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKK 112 (280)
T ss_dssp S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 345667777777555 56666688888888888888888888888888888888888888888887655443 45555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459 400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA 434 (442)
Q Consensus 400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 434 (442)
....-.+.|+.+...+..+++.+..|++.......
T Consensus 113 ~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~ 147 (280)
T PF05843_consen 113 FIEFESKYGDLESVRKVEKRAEELFPEDNSLELFS 147 (280)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 56666677888888888888888888766555443
No 219
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.0002 Score=63.54 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=25.9
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 013459 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385 (442)
Q Consensus 332 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 385 (442)
+|.+++..|+|++|+..|+-+.+.+.-+.+.+.+++.|++.+|.|.+|.....+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 444555555555555555544444333444444455555555555554444433
No 220
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00049 Score=65.22 Aligned_cols=106 Identities=13% Similarity=0.089 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|+...+++..-.++.+.++|++|+.+.++-....-.+ ...+..+.|+++++..++|+.++. -+++.+.......|+
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQ 118 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQ 118 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHH
Confidence 6778889999999999999999995544433222112 222688999999999999999998 556666778888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASL 432 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 432 (442)
+++++++|++|.+.|+...+.+-++.+...
T Consensus 119 vlYrl~~ydealdiY~~L~kn~~dd~d~~~ 148 (652)
T KOG2376|consen 119 VLYRLERYDEALDIYQHLAKNNSDDQDEER 148 (652)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 999999999999999999988877665543
No 221
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00024 Score=65.77 Aligned_cols=114 Identities=17% Similarity=0.107 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHH-HhhCCC------CH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEA-IKLNGN------NA--TYYSNRAAAYLESGSFLQAEADCTKAINL----- 389 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-l~~~p~------~~--~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----- 389 (442)
+.+..++...+.++..|+|..|.+.+... +...+. .. ..++++|.++++++.|.-+..+|.++++.
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999987654 222222 11 35689999999999999999999999961
Q ss_pred ----C---------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 390 ----D---------KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 390 ----~---------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
. -...+.+|+.|..|...|+.-.|.++|.++......++..|..++++
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC 378 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 13467999999999999999999999999999999999999999886
No 222
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.69 E-value=0.00024 Score=64.34 Aligned_cols=100 Identities=16% Similarity=0.103 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC----C--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN----G--NNATYYSNRAAAYLESGSFLQAEADCTKAINLDK------ 391 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p------ 391 (442)
..-.++.++|+++.-.|+|+.|+++|++.+.+. . ......|.+|..|.-+.+++.||.++.+-+.+..
T Consensus 233 aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dri 312 (639)
T KOG1130|consen 233 AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRI 312 (639)
T ss_pred HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345678899999999999999999999887652 2 2356788999999999999999999998776542
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 392 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
....+++.+|.++..+|+.++|+.+.++.+++
T Consensus 313 Ge~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 313 GELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 23568899999999999999999888777665
No 223
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.65 E-value=0.003 Score=57.27 Aligned_cols=98 Identities=14% Similarity=0.066 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 405 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 405 (442)
+......+..+.+.|++++|.+...++++..-+.. .+.. .-..+.++++.=++..++.++..|+++..++.+|..|.
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~ 339 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL 339 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHH--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 44556678888889999999888888887532221 1111 11123344444455555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHhhCCC
Q 013459 406 MLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 406 ~~~~~~~A~~~~~~~l~~~p~ 426 (442)
+.+.+.+|..+|+.+++..|+
T Consensus 340 k~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 340 KNKLWGKASEALEAALKLRPS 360 (400)
T ss_pred HhhHHHHHHHHHHHHHhcCCC
Confidence 555555555555555544443
No 224
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.65 E-value=0.00015 Score=65.61 Aligned_cols=104 Identities=17% Similarity=0.161 Sum_probs=85.4
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLD---- 390 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---- 390 (442)
+.-.....+-++|+.|+-.|+|++|+..-+.-+.+..+. ..++.++|.||.-+|+++.|+++|++.+.+.
T Consensus 190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg 269 (639)
T KOG1130|consen 190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG 269 (639)
T ss_pred hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc
Confidence 334566788999999999999999999887777764332 4688899999999999999999999976553
Q ss_pred C--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 391 K--KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 391 p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
. ...+..|.+|..|.-+.++++|+.++++-+.+.
T Consensus 270 ~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 270 NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 235577889999999999999999999877654
No 225
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.64 E-value=0.00061 Score=56.49 Aligned_cols=79 Identities=14% Similarity=0.063 Sum_probs=72.9
Q ss_pred cccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Q 013459 317 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 395 (442)
Q Consensus 317 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 395 (442)
+...-.|..+.+++.+|..+...|+|+.|.+.|+..++++|.+.-+..++|..++.-|+|+-|.+++.+-.+.+|+++-
T Consensus 90 QaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 90 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred hhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 3445558999999999999999999999999999999999999999999999999999999999999999999998863
No 226
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.62 E-value=0.0014 Score=59.31 Aligned_cols=87 Identities=18% Similarity=0.103 Sum_probs=79.2
Q ss_pred HHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHH
Q 013459 336 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 415 (442)
Q Consensus 336 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~ 415 (442)
..+-+++..-++..++.++..|+++..+..+|..+++.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+.++|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHH
Confidence 356688899999999999999999999999999999999999999999999999874 5566779999999999999999
Q ss_pred HHHHHHhh
Q 013459 416 DFSYALVL 423 (442)
Q Consensus 416 ~~~~~l~~ 423 (442)
.+++++.+
T Consensus 383 ~r~e~L~~ 390 (400)
T COG3071 383 VRREALLL 390 (400)
T ss_pred HHHHHHHH
Confidence 99999854
No 227
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.60 E-value=0.00013 Score=42.08 Aligned_cols=32 Identities=47% Similarity=0.674 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
++|+.+|.+|.++|++++|.++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666666666666666676666666666664
No 228
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.60 E-value=0.00011 Score=64.82 Aligned_cols=73 Identities=21% Similarity=0.188 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459 363 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD 435 (442)
Q Consensus 363 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 435 (442)
....|.-|+++|.|++|+.+|.+++..+|.|+-.+-+.+.+|+++.+|..|...+..++.++.....++....
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRM 172 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999998865555544333
No 229
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.0017 Score=55.58 Aligned_cols=119 Identities=13% Similarity=0.153 Sum_probs=95.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhhcc----cccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHH
Q 013459 287 GGDRFLLDTVQNMYASLQEQADIATKSK----LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY 362 (442)
Q Consensus 287 ~~d~~ll~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 362 (442)
..+..+......+...+.+.+.+..... ...++.+-...-.+..+.+..+.-+++|.+|...|++++..+|.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 4566677776666666655554444333 344566666777888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHH
Q 013459 363 YSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGTARE 405 (442)
Q Consensus 363 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~ 405 (442)
.++.+.|++.+|+...|++..+.++...|.. ....+++..+|.
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYE 334 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH
Confidence 9999999999999999999999999999864 345666766654
No 230
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.0013 Score=57.19 Aligned_cols=86 Identities=13% Similarity=0.069 Sum_probs=79.5
Q ss_pred HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHH
Q 013459 335 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 414 (442)
Q Consensus 335 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~ 414 (442)
.+.+..+|.+|++++..-.+..|.+...+..+|.||+...+|..|..+|+++..+.|...+..+..++.+++.+.+.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 013459 415 EDFSYA 420 (442)
Q Consensus 415 ~~~~~~ 420 (442)
......
T Consensus 99 rV~~~~ 104 (459)
T KOG4340|consen 99 RVAFLL 104 (459)
T ss_pred HHHHHh
Confidence 776544
No 231
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.58 E-value=0.0066 Score=52.26 Aligned_cols=118 Identities=16% Similarity=0.118 Sum_probs=94.4
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhc--------CHHHHHHHHHHHHhcC
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESG--------SFLQAEADCTKAINLD 390 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~--------~~~~A~~~~~~~l~~~ 390 (442)
.|-..++...++..+++.++|++|+...++.+.++|.++ -+++.+|.+++..- ...+|+..|+.++...
T Consensus 67 s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry 146 (254)
T COG4105 67 SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY 146 (254)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC
Confidence 355578899999999999999999999999999998875 46778888876543 2568888999999998
Q ss_pred CccHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 391 KKNVK-----------------AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 391 p~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
|+..- .-+..|..|.+.|.+..|+..++.+++..|+.......+..+..
T Consensus 147 PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~e 212 (254)
T COG4105 147 PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEE 212 (254)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 86521 22345778889999999999999999999888777666665543
No 232
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.54 E-value=0.004 Score=50.52 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
..++..+..+++..+..+++.+|...+++..+.+|. .++....++..+...|++.+|...|+.++...|+ +++...+
T Consensus 121 A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y 199 (251)
T COG4700 121 AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYY 199 (251)
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHH
Confidence 356678899999999999999999999999999885 4667778899999999999999999999999884 6677778
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 013459 401 GTAREMLGYYKEAIEDFSYAL 421 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l 421 (442)
+..+.++|+.++|...+....
T Consensus 200 ~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 200 AEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcchhHHHHHHHHHH
Confidence 999999998877766554443
No 233
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.01 Score=51.02 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 327 EIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 327 ~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
..+.++|..+.+ .+++++|.-.|++.-+..+..+......+.|++++++|++|...++.++..++++++.+.++-.
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 345555555543 4579999999999999888889999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHH-HHHHHHHHhhCCCChHHH
Q 013459 403 AREMLGYYKEA-IEDFSYALVLEPTNKRAS 431 (442)
Q Consensus 403 ~~~~~~~~~~A-~~~~~~~l~~~p~~~~~~ 431 (442)
+-..+|.-.++ .+.+.+....+|+.+-..
T Consensus 250 ~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 250 LALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 98888876554 456777777778766543
No 234
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.0031 Score=51.63 Aligned_cols=100 Identities=16% Similarity=-0.014 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
....++|..++..+++++|+..++.++....+. .-+-.+++.+..++|.+++|++.++....-+- ........|.+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDi 168 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhH
Confidence 456788999999999999999999999764443 34567889999999999999998776544211 12234567999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC
Q 013459 404 REMLGYYKEAIEDFSYALVLEPTN 427 (442)
Q Consensus 404 ~~~~~~~~~A~~~~~~~l~~~p~~ 427 (442)
+...|+-++|...|+++++.+++.
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCCh
Confidence 999999999999999999998543
No 235
>PRK10941 hypothetical protein; Provisional
Probab=97.50 E-value=0.0014 Score=58.06 Aligned_cols=79 Identities=10% Similarity=0.048 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
-...+.++=..+.+.++|+.|+.+.+..+.+.|+++.-+..+|.+|.+++.+..|..+++..++..|+++.+..-..++
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 3445556667777888888888888888888888888788888888888888888888888888888877765544433
No 236
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.0041 Score=52.32 Aligned_cols=110 Identities=19% Similarity=0.158 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCcc---
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA------TYYSNRAAAYLES-GSFLQAEADCTKAINLDKKN--- 393 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~--- 393 (442)
.++..-+..+...++..+.++|+.++++++++.-+.- .-+..+|.+|... .++++|+.+|+++-......
T Consensus 71 hDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ 150 (288)
T KOG1586|consen 71 HDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV 150 (288)
T ss_pred hhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence 3444455555566667799999999999999876532 3344778888764 89999999999987654322
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459 394 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 433 (442)
Q Consensus 394 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 433 (442)
...+..-+..-..+++|.+|++.|++.....-+|.-....
T Consensus 151 ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 151 SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhH
Confidence 3456666777789999999999999998877777655433
No 237
>PRK10941 hypothetical protein; Provisional
Probab=97.42 E-value=0.0036 Score=55.41 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
...++=.+|.+.++++.|+++.++.+.++|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+......+++
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 345677889999999999999999999999999999999999999999999999999999999999988766665554
No 238
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.0066 Score=52.21 Aligned_cols=111 Identities=14% Similarity=0.009 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh----cCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES----GSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.+..-.-..++.+..+++-|.+.+++..+++.+ ..+..++..+.+. +.+..|.-.|+..-...+..+..+..++
T Consensus 137 lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~A 214 (299)
T KOG3081|consen 137 LEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQA 214 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHH
Confidence 344444566788888899999999998888643 5566677777664 4689999999999987788889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
.|...+++|++|...++.++..++++++...++-.+-
T Consensus 215 v~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 215 VCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA 251 (299)
T ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999888776553
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.39 E-value=0.0019 Score=49.00 Aligned_cols=67 Identities=28% Similarity=0.305 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459 363 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 363 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
+...|.....-|+.+.|++.|.+++.+-|.++.+|.+.++++.-+|+.++|+..+++++++..+...
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~tr 112 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTR 112 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccch
Confidence 3456788889999999999999999999999999999999999999999999999999999776543
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.38 E-value=0.0016 Score=63.07 Aligned_cols=106 Identities=19% Similarity=0.057 Sum_probs=86.0
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 395 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 395 (442)
...|+..-.++..|+.+...|+.++|++.|++++....+ ..-.++.++.++..+.+|++|..++.++.+.+.-...
T Consensus 261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka 340 (468)
T PF10300_consen 261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA 340 (468)
T ss_pred HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence 344788888999999999999999999999999854332 2357889999999999999999999999997655433
Q ss_pred -HHHHHHHHHHHcCCH-------HHHHHHHHHHHhhCC
Q 013459 396 -AYLRRGTAREMLGYY-------KEAIEDFSYALVLEP 425 (442)
Q Consensus 396 -~~~~~a~~~~~~~~~-------~~A~~~~~~~l~~~p 425 (442)
..|..|.|+..+++. ++|.+.|+++-.+..
T Consensus 341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 445568899999998 888888888765543
No 241
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.37 E-value=0.0063 Score=45.32 Aligned_cols=93 Identities=18% Similarity=0.270 Sum_probs=71.4
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CC
Q 013459 331 EKGNQAYKDKQWLKAISFYTEAIKLNGN------------NATYYSNRAAAYLESGSFLQAEADCTKAINL-------DK 391 (442)
Q Consensus 331 ~~a~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~p 391 (442)
..|...++.|-|++|...+.++++.... +.-.+..|+..+..+|+|++++.-.+++|.. +.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 4466677889999999999999987422 2345667888999999999999888888754 44
Q ss_pred cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 392 KN----VKAYLRRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 392 ~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
+. ..+.++.+.++..+|+.++|++.|+++-+.
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44 346678999999999999999999998654
No 242
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.36 E-value=0.00038 Score=40.05 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 013459 362 YYSNRAAAYLESGSFLQAEADCTKAINLDK 391 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 391 (442)
+++.+|.+|.++|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666666666666666666666555
No 243
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.35 E-value=0.027 Score=45.04 Aligned_cols=88 Identities=10% Similarity=-0.199 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
..-...+..........++.+++..++...--+.|+.+..-..-|..++..|+|.+|+..++.+....|..+.+--.++.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34556788888899999999999999999999999999999999999999999999999999999989988888888999
Q ss_pred HHHHcCCH
Q 013459 403 AREMLGYY 410 (442)
Q Consensus 403 ~~~~~~~~ 410 (442)
|+..+++.
T Consensus 87 CL~~~~D~ 94 (160)
T PF09613_consen 87 CLYALGDP 94 (160)
T ss_pred HHHHcCCh
Confidence 99999885
No 244
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.35 E-value=0.019 Score=49.48 Aligned_cols=97 Identities=28% Similarity=0.353 Sum_probs=79.5
Q ss_pred HHHhcccHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHcCCH
Q 013459 335 QAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-NVKAYLRRGTAREMLGYY 410 (442)
Q Consensus 335 ~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~ 410 (442)
.+...+++++|+..|.+++...| .....+..++..+...+++++++..+.+++...+. ....+..++.++...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 78888999999999999888766 34566666677777888999999999999988888 688888889999988899
Q ss_pred HHHHHHHHHHHhhCCCChHHH
Q 013459 411 KEAIEDFSYALVLEPTNKRAS 431 (442)
Q Consensus 411 ~~A~~~~~~~l~~~p~~~~~~ 431 (442)
++|...+.+++...|......
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~ 239 (291)
T COG0457 219 EEALEYYEKALELDPDNAEAL 239 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHH
Confidence 999999999998888743333
No 245
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.0064 Score=56.49 Aligned_cols=107 Identities=16% Similarity=0.158 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
.-+...|...|.--..+++++.|-..|++|+..+..+...|...+.+-++.+....|...+++++.+-|.-...||.+-.
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34556788888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
+-..+|+...|.+.|++-++..|+...
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqa 176 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQA 176 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHH
Confidence 999999999999999999999998643
No 246
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.34 E-value=0.00052 Score=64.93 Aligned_cols=105 Identities=21% Similarity=0.130 Sum_probs=93.3
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHH
Q 013459 334 NQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE 412 (442)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~ 412 (442)
......|+...|+.++..++...|... ....+++++..+.+-...|-..+.+++.++...+-.++.+|.+|..+.+.+.
T Consensus 615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 333457999999999999999988654 4567899999999999999999999999997788899999999999999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 413 AIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 413 A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
|++.|+.+++++|+++...+.+..+.
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 99999999999999999988877664
No 247
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.34 E-value=0.0024 Score=47.24 Aligned_cols=93 Identities=14% Similarity=0.270 Sum_probs=76.3
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhcCCccHHHH
Q 013459 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESG-----------SFLQAEADCTKAINLDKKNVKAY 397 (442)
Q Consensus 332 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~~~~ 397 (442)
+|..++..|++-+|+++.+..+..++++. ..+..-|.++.++. -...+++.|.++..+.|.....+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999988776 44555677776554 25578999999999999998888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 398 LRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
+.+|.-+-....|+++.+-.++++...
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 888888777778888888888887653
No 248
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.33 E-value=0.0011 Score=57.94 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
.++..-...|....+.|+.+.|..+|+.++.+.|++++++..+|......++.-+|-++|-+++.++|.|.+++.+.+..
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 34555667788889999999999999999999999999999999999999999999999999999999999999887643
No 249
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.32 E-value=0.00046 Score=39.33 Aligned_cols=31 Identities=35% Similarity=0.374 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
+++++|.++.+.|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666665
No 250
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.32 E-value=0.0091 Score=51.61 Aligned_cols=117 Identities=27% Similarity=0.259 Sum_probs=97.0
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCC---ccHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAA-AYLESGSFLQAEADCTKAINLDK---KNVKAY 397 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~ 397 (442)
.+.....+...+..+...+++.+++..+.+++...+.+......... ++...+++++|+..+++++..+| .....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 35667788899999999999999999999999988877555566666 89999999999999999988777 356667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHH
Q 013459 398 LRRGTAREMLGYYKEAIEDFSYALVLEPT-NKRASLSADRLR 438 (442)
Q Consensus 398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~ 438 (442)
...+..+...+++++|...+.+++...+. .......+....
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 77777788999999999999999999998 455555554443
No 251
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.31 E-value=0.014 Score=52.62 Aligned_cols=101 Identities=13% Similarity=-0.040 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 406 (442)
+|....+...+.+..+.|-..|.++.+..+-...+|...|...++ .++.+.|.+.|+++++..|.+...|..+...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566777888888889999999999997766778999999999777 5667779999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCh
Q 013459 407 LGYYKEAIEDFSYALVLEPTNK 428 (442)
Q Consensus 407 ~~~~~~A~~~~~~~l~~~p~~~ 428 (442)
.++.+.|...|++++..-+.+.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHH
T ss_pred hCcHHHHHHHHHHHHHhcCchh
Confidence 9999999999999999887766
No 252
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0049 Score=54.59 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=69.2
Q ss_pred ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Q 013459 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 395 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 395 (442)
+..+..-++-.|.++|.+.+..|+|..|+....+++.++|.+..++++-+.|++.++++++|.++++..++.+.+.-.
T Consensus 111 kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 111 KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 444445577788999999999999999999999999999999999999999999999999999999999888755433
No 253
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.28 E-value=0.0036 Score=62.39 Aligned_cols=111 Identities=11% Similarity=-0.053 Sum_probs=87.9
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
....|+..-+..-.|..+++.|++++|..+++..-...+++...+..+-.||..++++++|...|+++++.+|. -+.++
T Consensus 36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~ 114 (932)
T KOG2053|consen 36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLY 114 (932)
T ss_pred HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHH
Confidence 44556666666667888888899999988888777777777778888888898999999999999999988888 77777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 430 (442)
.+-.+|.+.++|.+-.+.--+..+..|+++-.
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yy 146 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYKNFPKRAYY 146 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccch
Confidence 78888888888877666666666677877654
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.0038 Score=55.34 Aligned_cols=109 Identities=13% Similarity=0.021 Sum_probs=84.7
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcc---HHHHHHHHHHHHH
Q 013459 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-DKKN---VKAYLRRGTAREM 406 (442)
Q Consensus 331 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~---~~~~~~~a~~~~~ 406 (442)
..+..++..|++.+|...+++.++-.|.+.-++..--.+++.+|+...-...+++.+.. +++- ....-.++.++.+
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 34556677888888888889999888888877777778888888888888888888866 6555 3333346777888
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 407 LGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 407 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
.|-|++|.+.-++++++++.+.-+...++.+.+
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle 220 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLE 220 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHHHHHHHHHHH
Confidence 888999998889999988888777776666654
No 255
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.23 E-value=0.00023 Score=66.02 Aligned_cols=86 Identities=19% Similarity=0.134 Sum_probs=78.7
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 399 (442)
.-+|..+..+-+++..+++.++|..|+..+.++++++|....+|+.+|.+.+.++++.+|...|+....+.|+++.+...
T Consensus 32 ~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 32 ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHH
Confidence 33477778888899999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHH
Q 013459 400 RGTARE 405 (442)
Q Consensus 400 ~a~~~~ 405 (442)
+..|-.
T Consensus 112 ~~Ec~~ 117 (476)
T KOG0376|consen 112 IDECNK 117 (476)
T ss_pred HHHHHH
Confidence 777654
No 256
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.21 E-value=0.0036 Score=64.60 Aligned_cols=94 Identities=9% Similarity=-0.051 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 407 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 407 (442)
.|..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+++.|...+++++++.|++...|..+..+|.+.
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 4555666666677777776666543 2222 3445666666677777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhh
Q 013459 408 GYYKEAIEDFSYALVL 423 (442)
Q Consensus 408 ~~~~~A~~~~~~~l~~ 423 (442)
|++++|.+.+++..+.
T Consensus 542 G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 542 GRQAEAAKVVETLKRK 557 (697)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 7777777777766544
No 257
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.17 E-value=0.0033 Score=50.60 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
...+..++..+...|++++|+..+++++..+|.+..++..+-.+|...|++.+|++.|++..+.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3456677888899999999999999999999999999999999999999999999999987543
No 258
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.14 E-value=0.0074 Score=56.49 Aligned_cols=90 Identities=10% Similarity=0.055 Sum_probs=56.8
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCC
Q 013459 347 SFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY-YKEAIEDFSYALVLEP 425 (442)
Q Consensus 347 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p 425 (442)
.+|+++....+.+...|.+......+.+.+.+--+.|.+++..+|++++.|..-|.-.++.+. .+.|.+.|.++++.+|
T Consensus 92 ~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np 171 (568)
T KOG2396|consen 92 FLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP 171 (568)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC
Confidence 445566666666666666666655555556666666777777677776666666665555444 6666666777777777
Q ss_pred CChHHHHHHHH
Q 013459 426 TNKRASLSADR 436 (442)
Q Consensus 426 ~~~~~~~~l~~ 436 (442)
+++..|...-+
T Consensus 172 dsp~Lw~eyfr 182 (568)
T KOG2396|consen 172 DSPKLWKEYFR 182 (568)
T ss_pred CChHHHHHHHH
Confidence 76666654433
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.14 E-value=0.0053 Score=57.58 Aligned_cols=62 Identities=11% Similarity=-0.134 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013459 361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRRGTAREMLGYYKEAIEDFSYALV 422 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 422 (442)
.+...+++|..++|+.+||++.++..++.+|. +..+++++-.++..++.|.++.+.+.+.=+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 45667899999999999999999999998875 456899999999999999999998888643
No 260
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.11 E-value=0.023 Score=60.52 Aligned_cols=96 Identities=9% Similarity=-0.027 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKL----NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRG 401 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a 401 (442)
..|..+...+.+.|++++|.++|++..+. .| +...|..+..+|.+.|++++|++.|++..+.+ +.+...|..+.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI 621 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 34555555555666666666666555432 22 23445555555555666666666665555544 23344555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh
Q 013459 402 TAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
..|.+.|++++|.+.|++..+.
T Consensus 622 ~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 622 NSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHhcCCHHHHHHHHHHHHHc
Confidence 5555555555555555555543
No 261
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0009 Score=56.32 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
..-|..++...+|..|+.+|.+++.++|..+..|-+.+.|+.++.+++......+++++++|+...++..++...
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 345777888899999999999999999999999999999999999999999999999999999998888887664
No 262
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.09 E-value=0.0011 Score=37.66 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 013459 363 YSNRAAAYLESGSFLQAEADCTKAINLDKK 392 (442)
Q Consensus 363 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 392 (442)
++.+|.++.+.|++++|++.|++++...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444455555555555555555555544443
No 263
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.02 Score=48.74 Aligned_cols=108 Identities=19% Similarity=0.099 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----Cc
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLD-----KK 392 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~ 392 (442)
..+..|..-+..+...++|++|...+.++.+-..++ ..+|...+++...+..+.|+..+|+++..+. |+
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 345566667777788899999999999998665544 3566677888888899999999999998764 33
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 013459 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS 431 (442)
Q Consensus 393 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 431 (442)
-...-...+-=..+.-+.++|++.|++++.+..++...+
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ 147 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQ 147 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHH
Confidence 222222233334466678999999999887765544433
No 264
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.07 E-value=0.0067 Score=43.90 Aligned_cols=65 Identities=22% Similarity=0.166 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHcCC
Q 013459 345 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRGTAREMLGY 409 (442)
Q Consensus 345 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~~~ 409 (442)
.+..+++.++.+|++..+.+.++..+...|++++|+..+-.+++.+++. ..+.-.+-.++..+|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3556788888999999999999999999999999999999999888765 3333333344444443
No 265
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.06 E-value=0.03 Score=59.72 Aligned_cols=94 Identities=16% Similarity=-0.002 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRGTARE 405 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~ 405 (442)
.|..+...+.+.|++++|.+++++..+.. +.+...|..+...|.+.|++++|++.|++..+.. ..+...|..+...|.
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~ 730 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 44444555555555555555555554432 1233445555555555555555555555543321 112334444555555
Q ss_pred HcCCHHHHHHHHHHHH
Q 013459 406 MLGYYKEAIEDFSYAL 421 (442)
Q Consensus 406 ~~~~~~~A~~~~~~~l 421 (442)
+.|++++|.+.|++..
T Consensus 731 k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 731 EGNQLPKALEVLSEMK 746 (1060)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555555443
No 266
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.05 E-value=0.012 Score=61.62 Aligned_cols=111 Identities=13% Similarity=-0.064 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--cHHHHHHHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRRGTA 403 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~ 403 (442)
-..+..+...|.+.+++++|.++|+..++...+....|..++..++..++-++|...+.+|++--|. +.+.....|++
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 3455566777777778888888888888777777777888888887777777888888888877776 56666777777
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459 404 REMLGYYKEAIEDFSYALVLEPTNKRASLSADR 436 (442)
Q Consensus 404 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 436 (442)
-++.|+.+.+...|+-.+.-+|...+.|..+-.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 778888888888888888888777777765443
No 267
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.04 E-value=0.015 Score=58.27 Aligned_cols=93 Identities=16% Similarity=0.039 Sum_probs=86.1
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHH
Q 013459 334 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 413 (442)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A 413 (442)
.-....+++..|+....+.++.+|+..-+....|..+.++|+.++|..+++..-...+++-..+..+-.||..++++++|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34567889999999999999999999999889999999999999999888888888888888898999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 013459 414 IEDFSYALVLEPT 426 (442)
Q Consensus 414 ~~~~~~~l~~~p~ 426 (442)
...|++++..+|+
T Consensus 97 ~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 97 VHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHHhhCCc
Confidence 9999999999999
No 268
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.99 E-value=0.0041 Score=39.64 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
.++.++..++++|+|++|..+++.+++.+|+|.++....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 456667777777777777777777777777776665443
No 269
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.018 Score=48.64 Aligned_cols=105 Identities=15% Similarity=0.087 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhc-ccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH----
Q 013459 326 AEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV---- 394 (442)
Q Consensus 326 ~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---- 394 (442)
+..+..+|..|-.. .++++|+.+|+++-+....+ ...+.-.+..-.++++|.+|+..|+++....-+|.
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 44556677777665 88999999999988764432 24455567777889999999999999887655442
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459 395 ---KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 395 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 430 (442)
..++..|.|+....+.-.+...+++..+++|.....
T Consensus 193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 355667888888888888999999999999976543
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.94 E-value=0.01 Score=55.70 Aligned_cols=111 Identities=18% Similarity=0.145 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRGT 402 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~ 402 (442)
.-+-+.+|.++.+.|+.+||++.+...++.+|. +..+++++..++..+++|.++.+.+.+--... |......|..+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 344567899999999999999999999988775 45789999999999999999999888864332 555666666665
Q ss_pred HHHH-cCC---------------HHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459 403 AREM-LGY---------------YKEAIEDFSYALVLEPTNKRASLSADR 436 (442)
Q Consensus 403 ~~~~-~~~---------------~~~A~~~~~~~l~~~p~~~~~~~~l~~ 436 (442)
+..+ .++ -..|.+.+.+|++.+|-.+.....++.
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~ 388 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKS 388 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCC
Confidence 5432 222 134678899999999988776655443
No 271
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.92 E-value=0.011 Score=57.52 Aligned_cols=97 Identities=18% Similarity=0.076 Sum_probs=82.2
Q ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHcCCHHHHH
Q 013459 339 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----NVKAYLRRGTAREMLGYYKEAI 414 (442)
Q Consensus 339 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~~a~~~~~~~~~~~A~ 414 (442)
..+.++|.+++++..+..|+..-..+..|.++...|+.++|++.|++++..... ..-.++.++.++..+.++++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 457788999999999999999999999999999999999999999998853322 2447788999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHHHH
Q 013459 415 EDFSYALVLEPTNKRASLSAD 435 (442)
Q Consensus 415 ~~~~~~l~~~p~~~~~~~~l~ 435 (442)
++|.++.+.+.-+...+.++.
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHhccccHHHHHHHHH
Confidence 999999998766555554444
No 272
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.90 E-value=0.012 Score=60.87 Aligned_cols=90 Identities=12% Similarity=-0.041 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459 329 AKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 407 (442)
Q Consensus 329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 407 (442)
+..+...+.+.|++++|.+.+.++++.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHc
Confidence 3333344444444444444444443332 22233334444444444444444444443322 1223344444444444
Q ss_pred CCHHHHHHHHHHHH
Q 013459 408 GYYKEAIEDFSYAL 421 (442)
Q Consensus 408 ~~~~~A~~~~~~~l 421 (442)
|+.++|++.|++..
T Consensus 405 G~~~~A~~lf~~M~ 418 (697)
T PLN03081 405 GRGTKAVEMFERMI 418 (697)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444433
No 273
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.013 Score=49.70 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 397 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 397 (442)
.-.+.+...|++..++|-+++++....+..+|.+..+|+.+|.++...=+..+|..+|.++++++|.-..+.
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 345778999999999999999999999999999999999999999999999999999999999999754443
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.86 E-value=0.0023 Score=37.30 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=11.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 013459 397 YLRRGTAREMLGYYKEAIEDFSY 419 (442)
Q Consensus 397 ~~~~a~~~~~~~~~~~A~~~~~~ 419 (442)
|.++|.+|.++|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555555
No 275
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.85 E-value=0.0045 Score=54.17 Aligned_cols=67 Identities=25% Similarity=0.270 Sum_probs=62.2
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459 370 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR 436 (442)
Q Consensus 370 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 436 (442)
..+.|+.++|...|+.++.+.|.+++++..+|+.....++.-+|-++|-+++.++|.|.++..+.++
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 4578999999999999999999999999999999999999999999999999999999998876654
No 276
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.80 E-value=0.0032 Score=58.54 Aligned_cols=83 Identities=20% Similarity=0.215 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh---------C---------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---------N---------GNNATYYSNRAAAYLESGSFLQAEADCTKA 386 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------~---------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 386 (442)
....|+++|.++++.+.|.-+..+|.++++. . ...-.+.|+.|..|.+.|++..|.++|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 5566789999999999999999999999961 1 123578999999999999999999999999
Q ss_pred HhcCCccHHHHHHHHHHHHHc
Q 013459 387 INLDKKNVKAYLRRGTAREML 407 (442)
Q Consensus 387 l~~~p~~~~~~~~~a~~~~~~ 407 (442)
.+..-.++..|..++.|+...
T Consensus 362 v~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHHH
Confidence 999989999999999998643
No 277
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.78 E-value=0.055 Score=57.03 Aligned_cols=111 Identities=12% Similarity=0.014 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.....|...+..++++++-+.|..++.+|++.-|. +.......+++.++.|+.+.+...|+-.+.-+|...+.|.-+.
T Consensus 1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence 46678999999999999999999999999999887 6788888999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSA 434 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 434 (442)
..-.++++.+.....|++++.+.=.-..+....
T Consensus 1642 d~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred HHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 999999999999999999988764444444333
No 278
>PLN03077 Protein ECB2; Provisional
Probab=96.76 E-value=0.028 Score=59.56 Aligned_cols=102 Identities=8% Similarity=-0.029 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459 329 AKEKGNQAYKDKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406 (442)
Q Consensus 329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 406 (442)
+..+-..+.+.|++++|.++|++..+..+ .+...|..+..++.+.|++++|.+.+++. ...| +...|..+-.++..
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~ 669 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRI 669 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH
Confidence 33333444455555555555555442211 12234444455555555555555554443 1222 12333333333344
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHH
Q 013459 407 LGYYKEAIEDFSYALVLEPTNKRASL 432 (442)
Q Consensus 407 ~~~~~~A~~~~~~~l~~~p~~~~~~~ 432 (442)
.++.+.+....+++++++|++...+.
T Consensus 670 ~~~~e~~e~~a~~l~~l~p~~~~~y~ 695 (857)
T PLN03077 670 HRHVELGELAAQHIFELDPNSVGYYI 695 (857)
T ss_pred cCChHHHHHHHHHHHhhCCCCcchHH
Confidence 44444444444444444444444333
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.74 E-value=0.11 Score=43.22 Aligned_cols=103 Identities=17% Similarity=0.068 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHH--
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KNVK-- 395 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~-- 395 (442)
.+.-..+..+|..|.+.|++++|++.|.++.+..... .+.+..+..+.+..+++..+..+..++-.+-. .+.+
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 4556789999999999999999999999988764332 46777888889999999999999999876532 2222
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 396 --AYLRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 396 --~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
.....|..+...++|.+|.+.|..+..-..
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 233457778889999999999887765543
No 280
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.68 E-value=0.03 Score=47.96 Aligned_cols=99 Identities=20% Similarity=0.135 Sum_probs=64.8
Q ss_pred cccHHHHHHHHHHHHhh----CCC---CHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHhcCC------ccHHHHH
Q 013459 339 DKQWLKAISFYTEAIKL----NGN---NATYYSNRAAAYLESGSFL-------QAEADCTKAINLDK------KNVKAYL 398 (442)
Q Consensus 339 ~~~~~~A~~~~~~al~~----~p~---~~~~~~~~~~~~~~~~~~~-------~A~~~~~~~l~~~p------~~~~~~~ 398 (442)
...+++|++.|.-|+-. ..+ -...+..+|.+|..+++.+ .|+..|++++.... +.....|
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 34455555555555432 111 1456777888888888844 55555555554432 2256888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCh--HHHHHHHHH
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVLEPTNK--RASLSADRL 437 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~l~~~ 437 (442)
.+|.+..++|++++|.++|.+++.....+. .+.......
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~ 210 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQ 210 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 899999999999999999999998766555 444444433
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.68 E-value=0.0034 Score=36.59 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Q 013459 363 YSNRAAAYLESGSFLQAEADCTKAI 387 (442)
Q Consensus 363 ~~~~~~~~~~~~~~~~A~~~~~~~l 387 (442)
+.++|.+|.++|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555543
No 282
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.67 E-value=0.016 Score=41.93 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHH
Q 013459 379 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN--KRASLSADRL 437 (442)
Q Consensus 379 A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~ 437 (442)
.+..+++.+..+|++.++.+.+|..+...|++++|++.+.++++.+++. ..+...+-.+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~ 67 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDI 67 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999998765 4444444333
No 283
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.63 E-value=0.0038 Score=34.79 Aligned_cols=30 Identities=43% Similarity=0.575 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 396 AYLRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
+++.+|.++...+++++|..+++++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555554444
No 284
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0033 Score=56.19 Aligned_cols=114 Identities=27% Similarity=0.351 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCC-----------C--------CHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-----------N--------NATYYSNRAAAYLESGSFLQAEADCTKAI 387 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----------~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 387 (442)
+...+.+...++.++|++|..-|.+++..-. + -...+.+++.+-++.+.+..|+.....++
T Consensus 223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~ 302 (372)
T KOG0546|consen 223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL 302 (372)
T ss_pred hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence 4445567788889999998888888875421 1 12345668888999999999999999999
Q ss_pred hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 388 NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 388 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
+.++....++|..+..+..+.++++|++.++.+....|++......+...++.
T Consensus 303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999988877766654
No 285
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.58 E-value=0.23 Score=39.14 Aligned_cols=87 Identities=9% Similarity=-0.120 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
.-...+.+.........+.+++..++...--+.|+....-.--|.+++..|+|.+|+..++.+....+..+-+.-.++.|
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 34456667777777899999999999998889999999988899999999999999999999999888878777788999
Q ss_pred HHHcCCH
Q 013459 404 REMLGYY 410 (442)
Q Consensus 404 ~~~~~~~ 410 (442)
+.-+|+.
T Consensus 88 L~al~Dp 94 (153)
T TIGR02561 88 LNAKGDA 94 (153)
T ss_pred HHhcCCh
Confidence 9999885
No 286
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=0.12 Score=48.48 Aligned_cols=101 Identities=15% Similarity=0.066 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
-.-+..|...|....++.+...|-+.+-.+|...|.+. .+.....+-.++++++.+.+.|++-+.-.|.+..+|...|.
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAE 479 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHH
Confidence 34566777888888888888888888888888888763 33444566677888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC
Q 013459 403 AREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
.-..+|+.+.|...|+-|++..
T Consensus 480 lE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHhhhHHHHHHHHHHHhcCc
Confidence 8888888888888887777553
No 287
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.55 E-value=0.018 Score=52.75 Aligned_cols=92 Identities=17% Similarity=0.168 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCC-C-----C-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459 329 AKEKGNQAYKDKQWLKAISFYTEAIKLNG-N-----N-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 397 (442)
Q Consensus 329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~-----~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 397 (442)
.+.........|+|..|+++..+...+.. . + ..+-..+..||+++++.+.|+.+..+.+.++|.++.-+
T Consensus 186 ~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnH 265 (569)
T PF15015_consen 186 CYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNH 265 (569)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHH
Confidence 33333444444555555555555443322 1 1 22345688999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 013459 398 LRRGTAREMLGYYKEAIEDFSYA 420 (442)
Q Consensus 398 ~~~a~~~~~~~~~~~A~~~~~~~ 420 (442)
...|.|+..+.+|.+|.+.+--+
T Consensus 266 LrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 266 LRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988765443
No 288
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.55 E-value=0.026 Score=50.83 Aligned_cols=103 Identities=18% Similarity=0.149 Sum_probs=84.2
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC----C------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----N------ATYYSNRAAAYLESGSFLQAEADCTKAINLD- 390 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~- 390 (442)
.--+.+++..++..+-+.+||++|..+..++.++-.. + ..+.+.++..+..+|+.-.|.++++.+.++.
T Consensus 158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal 237 (518)
T KOG1941|consen 158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL 237 (518)
T ss_pred ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 3446678999999999999999999999999887432 2 3466778889999999999999999987764
Q ss_pred -----CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 391 -----KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 391 -----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
+-....+..+|.+|...|+.+.|..-|+.++..-
T Consensus 238 ~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 238 QHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 2334566778999999999999999999988653
No 289
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.53 E-value=0.005 Score=34.27 Aligned_cols=31 Identities=32% Similarity=0.381 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 013459 362 YYSNRAAAYLESGSFLQAEADCTKAINLDKK 392 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 392 (442)
+++.+|.++..++++++|+.+++++++.+|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666666553
No 290
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.51 E-value=0.0041 Score=52.12 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=57.3
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Q 013459 334 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 395 (442)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 395 (442)
....+.++++.|.++|.+++++.|+...-|+.+|....+.|+++.|.+.|++.++++|++..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 45677899999999999999999999999999999999999999999999999999998743
No 291
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.44 E-value=0.034 Score=50.06 Aligned_cols=98 Identities=18% Similarity=0.189 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--------
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-------- 392 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-------- 392 (442)
.....+++.+.-.+.|+++++.|+++++...++ ..++..+|..+-+++++++|+-+..++..+-..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 567778999999999999999999999875443 357788999999999999999999998876321
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 393 --NVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 393 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
..-++|.++.++..+|+.-+|.++++++.++.
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 13467889999999999999999999987763
No 292
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.39 E-value=0.043 Score=58.69 Aligned_cols=99 Identities=16% Similarity=0.043 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------H
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-----TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------V 394 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~ 394 (442)
......++..++..|++++|...++++++..+... .+...+|.++...|++++|...+++++...... .
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 44555678889999999999999999998654432 356778999999999999999999998753321 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 395 KAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
.++.++|.++...|++++|...+++++++.
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 356778999999999999999999998863
No 293
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.37 E-value=0.056 Score=41.53 Aligned_cols=79 Identities=8% Similarity=0.019 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcc---cHHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 326 AEIAKEKGNQAYKDK---QWLKAISFYTEAIK-LNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~---~~~~A~~~~~~al~-~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
.+..+++|.++.++. +.++.+.+++..++ -+|+. .+..+.++..++++++|+.++++.+.+++..|+|.++.-..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 456778888887765 56788999999996 44443 46788899999999999999999999999999999887554
Q ss_pred HHHH
Q 013459 401 GTAR 404 (442)
Q Consensus 401 a~~~ 404 (442)
-.+.
T Consensus 112 ~~ie 115 (149)
T KOG3364|consen 112 ETIE 115 (149)
T ss_pred HHHH
Confidence 4443
No 294
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.058 Score=52.22 Aligned_cols=98 Identities=15% Similarity=0.100 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
..+.+.|..+++.++|..+++.|...+..-|.+ .....+++.||..+.+.+.|.+.++.|-+.+|.++-.-+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 467788999999999999999999999886654 45677889999999999999999999999999998887778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
-.+....+.-++|+.+..+.....
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhh
Confidence 888888899999999888776554
No 295
>PLN03077 Protein ECB2; Provisional
Probab=96.30 E-value=0.081 Score=56.17 Aligned_cols=100 Identities=13% Similarity=0.012 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KNVKAYLRR 400 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~ 400 (442)
+...|..+...|.+.|+.++|+++|++..+. .|+. ..+..+-..+.+.|++++|.++|+...+..+ .+.+.|..+
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 4567888888899999999999999988764 4544 3455555667788999999999988874332 245677778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
..+|.+.|++++|.+.+++. ...|+
T Consensus 632 v~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 88889999999999888875 34555
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.28 E-value=0.14 Score=48.04 Aligned_cols=117 Identities=18% Similarity=0.107 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C--C----
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQAEADCTKAINL-D--K---- 391 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~--p---- 391 (442)
......+...+....+.|+++.|...+.++...++. .+.+....+..+...|+..+|+..++..+.. . .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 456778899999999999999999999998876522 4677788899999999999999998887761 0 0
Q ss_pred ---------------------------ccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 392 ---------------------------KNVKAYLRRGTAREML------GYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 392 ---------------------------~~~~~~~~~a~~~~~~------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
...++++.+|.....+ ++++++.+.|+++.+++|+...++..++...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 0134566677766666 7888899999999999999998888777765
Q ss_pred h
Q 013459 439 K 439 (442)
Q Consensus 439 ~ 439 (442)
.
T Consensus 303 ~ 303 (352)
T PF02259_consen 303 D 303 (352)
T ss_pred H
Confidence 4
No 297
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.19 E-value=0.0087 Score=50.25 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=56.8
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459 369 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
...+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|++.-
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 4557789999999999999999999999999999999999999999999999999998754
No 298
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.17 E-value=0.058 Score=57.71 Aligned_cols=99 Identities=12% Similarity=-0.002 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----c
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--------NATYYSNRAAAYLESGSFLQAEADCTKAINLDK-----K 392 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-----~ 392 (442)
...+..+|..++..|++++|...+++++.+... ....+..+|.++...|++++|...+++++.... .
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 345566777778888888888888887775221 122345667777778888888888888766422 1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 393 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
...++..++.++...|++++|.+.++++..+.
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 23455567778888888888888888876653
No 299
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.16 E-value=0.014 Score=51.28 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=55.1
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN-RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 399 (442)
..+.+...|.+.+....+.+.|.+-...|.+++..+|.+.+.|.. .+.-+...++++.+...|.++++.+|+++..|+.
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 335666677777777777777777777777777777777777665 3344555677777777777777777777776654
Q ss_pred H
Q 013459 400 R 400 (442)
Q Consensus 400 ~ 400 (442)
.
T Consensus 182 y 182 (435)
T COG5191 182 Y 182 (435)
T ss_pred H
Confidence 3
No 300
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.25 Score=42.27 Aligned_cols=94 Identities=18% Similarity=0.139 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------H
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-----GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------V 394 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~ 394 (442)
+..+-+.+..+.....+.|+..+|+++..+. |+....-...+-=.....++++|++.|++++..-... .
T Consensus 71 AKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 71 AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 3444455555556667777777777776652 3333333333333445666777777777766543221 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 013459 395 KAYLRRGTAREMLGYYKEAIEDFSY 419 (442)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~A~~~~~~ 419 (442)
+.+-..+.++.....|++|...+.+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 2333345566666666666655544
No 301
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.065 Score=47.84 Aligned_cols=106 Identities=11% Similarity=-0.021 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Ccc---HHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKN---VKAYL 398 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~---~~~~~ 398 (442)
|-..-+.-..+..+...|-|++|.+..++++++++.+..+....+.++...++++++.+.+.+--..= ... ..-|+
T Consensus 172 p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyW 251 (491)
T KOG2610|consen 172 PCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYW 251 (491)
T ss_pred cHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhH
Confidence 33344455667788899999999999999999999999999999999999999999999887653221 111 22345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH--hhCCCCh
Q 013459 399 RRGTAREMLGYYKEAIEDFSYAL--VLEPTNK 428 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l--~~~p~~~ 428 (442)
.-+.++.+-++|+.|+..|.+-+ ++..++.
T Consensus 252 H~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 252 HTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 56888889999999999998765 4555555
No 302
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.061 Score=46.95 Aligned_cols=76 Identities=16% Similarity=0.211 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
....++=..+.+.++++.|....++.+.++|+++.-+..+|.+|.++|-+..|+++++..++.-|+.+.+-.....
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 3444455566777888888888888888888888888888888888888888888888888888887776554443
No 303
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.85 E-value=0.011 Score=52.77 Aligned_cols=75 Identities=24% Similarity=0.097 Sum_probs=69.4
Q ss_pred ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 013459 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 392 (442)
.+..+|..+..+-.++.++++.++...|+..+..+++++|+...-|-.++..+..+|+|++|..+++.+++++-+
T Consensus 140 ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 140 AIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred ccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 455668888999999999999999999999999999999999999999999999999999999999999998743
No 304
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.094 Score=45.83 Aligned_cols=76 Identities=25% Similarity=0.289 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
.++=..+...++++.|....++.+.++|+++.-+--.|.+|.++|.++-|++.++..++..|+++.+.....++.+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~ 260 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLE 260 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3445667889999999999999999999999989899999999999999999999999999999887665555543
No 305
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.69 E-value=0.23 Score=39.80 Aligned_cols=81 Identities=15% Similarity=-0.072 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
..+.....+-.+.++..++...+.-+-.+.|+.++.-..-|.++...|++.+|+..|+.+.+-.|..+.+...++.|.+.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 44556667777888999999999999999999999999999999999999999999999999999999999888888765
Q ss_pred h
Q 013459 441 F 441 (442)
Q Consensus 441 ~ 441 (442)
+
T Consensus 91 ~ 91 (160)
T PF09613_consen 91 L 91 (160)
T ss_pred c
Confidence 4
No 306
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.31 Score=42.18 Aligned_cols=103 Identities=14% Similarity=0.053 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHH-HHHHHHHHHHhcCCccHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-QAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
|.+-.+|..+-.++... .+..+-++.++++++.+|.+...|..+=.+....|++. .-+...++++..+..|-.+|...
T Consensus 74 pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshR 153 (318)
T KOG0530|consen 74 PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHR 153 (318)
T ss_pred cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHH
Confidence 44444444443333332 24455556666666666666666666655555566655 55556666666666666666655
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
-.+....+.+++-+++..+.++.+-
T Consensus 154 qW~~r~F~~~~~EL~y~~~Lle~Di 178 (318)
T KOG0530|consen 154 QWVLRFFKDYEDELAYADELLEEDI 178 (318)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 5555555555555555555544443
No 307
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.63 E-value=0.32 Score=44.85 Aligned_cols=108 Identities=7% Similarity=-0.106 Sum_probs=81.9
Q ss_pred cccccchHHHHHHHHHHHHHHhccc------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 013459 317 TNTFNQKQSAEIAKEKGNQAYKDKQ------------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384 (442)
Q Consensus 317 ~~~~~~~~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 384 (442)
....++|.+.+.|..+....-..-. .+..+.+|++|++.+|++...+..+-.+..+.-+.++..+-++
T Consensus 10 ~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we 89 (321)
T PF08424_consen 10 RRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWE 89 (321)
T ss_pred HHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3567788888888888766544322 4566778999999999998888888888888888888899999
Q ss_pred HHHhcCCccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhC
Q 013459 385 KAINLDKKNVKAYLRRGTARE---MLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 385 ~~l~~~p~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~l~~~ 424 (442)
+++..+|+++..|..+-.... ..-.+++..+.|.++++.-
T Consensus 90 ~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L 132 (321)
T PF08424_consen 90 ELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL 132 (321)
T ss_pred HHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 999999998888865533322 2335788888898888653
No 308
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.14 Score=44.13 Aligned_cols=148 Identities=11% Similarity=0.014 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013459 291 FLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAA 369 (442)
Q Consensus 291 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~~~~ 369 (442)
+++++-..+.+.+..........- ..-+.+.|.+-++|..+-...-..|++. .-++..++++..+..+..+|..+-.+
T Consensus 78 TVW~yRr~iL~~l~~dL~~El~~l-~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~ 156 (318)
T KOG0530|consen 78 TVWQYRRVILRHLMSDLNKELEYL-DEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWV 156 (318)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHH-HHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHH
Confidence 344444444443333332222221 2335566788889988888888888888 77888999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 370 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM-LG-----YYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 370 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~~-----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
...-+.|+.-+++..++++.+-.|-.+|...=.+... .| ..+.-+.+..+.+.+.|+|..+|.++..+.+
T Consensus 157 ~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 157 LRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLE 232 (318)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 9999999999999999999988777777654333322 22 2455667888899999999999999988765
No 309
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.36 Score=46.64 Aligned_cols=103 Identities=22% Similarity=0.038 Sum_probs=85.7
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH-HHHhcCCccHHHHHHH------HHHH
Q 013459 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT-KAINLDKKNVKAYLRR------GTAR 404 (442)
Q Consensus 332 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~-~~l~~~p~~~~~~~~~------a~~~ 404 (442)
+...+...++...+......++..+|++..++.+++......|....+...+. .+....|++.+....+ +..+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 67777788899899999999999999999999999988888877666665554 4889999987766555 8888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459 405 EMLGYYKEAIEDFSYALVLEPTNKRASLSA 434 (442)
Q Consensus 405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 434 (442)
..+++-.++...++++..+.|.+++....+
T Consensus 153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 153 KLLGRTAEAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred HHhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 888899999999999999999987765444
No 310
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.34 E-value=1.4 Score=41.43 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=47.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013459 367 AAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA 420 (442)
Q Consensus 367 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 420 (442)
|..++..|+|.++..+..-+.+..| ++.++..+|.|+....+|++|..++.+.
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4556788999999999999999999 8999999999999999999999988654
No 311
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.30 E-value=1.6 Score=39.35 Aligned_cols=103 Identities=14% Similarity=0.036 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhh----CC---CC-------HHHHHHHHHHHHHhcCHHH---HHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKL----NG---NN-------ATYYSNRAAAYLESGSFLQ---AEADCT 384 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~----~p---~~-------~~~~~~~~~~~~~~~~~~~---A~~~~~ 384 (442)
..-+..+++.|...++.+ +|++|+..+++++++ .. .. ...+..++.+|.+.+.++. |....+
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~ 111 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 567788999999999999 999999999999987 21 11 3466778899988887554 444445
Q ss_pred HHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 385 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
.+-...|+.+..++..=.++.+.++.+++.+.+.+++..-+
T Consensus 112 ~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 112 LLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 55555677777775555555558888888888888887654
No 312
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.30 E-value=0.43 Score=43.97 Aligned_cols=83 Identities=8% Similarity=-0.055 Sum_probs=56.8
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhcC------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013459 352 AIKLNGNNATYYSNRAAAYLESGS------------FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSY 419 (442)
Q Consensus 352 al~~~p~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 419 (442)
.++.+|++..+|..+....-..-. .+.-+..|++|++.+|++...+..+-.++.+..+-++..+.+++
T Consensus 11 ~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~ 90 (321)
T PF08424_consen 11 RVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEE 90 (321)
T ss_pred HHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455667777777766655544422 45566677777777777777777766667777777777777888
Q ss_pred HHhhCCCChHHHHHH
Q 013459 420 ALVLEPTNKRASLSA 434 (442)
Q Consensus 420 ~l~~~p~~~~~~~~l 434 (442)
++..+|++...|..+
T Consensus 91 ~l~~~~~~~~LW~~y 105 (321)
T PF08424_consen 91 LLFKNPGSPELWREY 105 (321)
T ss_pred HHHHCCCChHHHHHH
Confidence 888777777776544
No 313
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.28 E-value=0.27 Score=33.95 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHH---HHHHHhcCHHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA---AAYLESGSFLQAEADCTKAI 387 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~---~~~~~~~~~~~A~~~~~~~l 387 (442)
.+....+.|..++.+++.++|+..++++++..++..+.+..+| .+|...|+|++.+++..+=+
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777777777666655444443 55666677777666654433
No 314
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.27 E-value=0.11 Score=51.83 Aligned_cols=116 Identities=29% Similarity=0.409 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHH--hcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLE--SGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~--~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
.+......++.+++.++|.+|..-|..++.+-|.+ .....+.+.|+++ +++|..++..+.-++...|....++.
T Consensus 52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll 131 (748)
T KOG4151|consen 52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALL 131 (748)
T ss_pred HHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHh
Confidence 44456667888999999999988888888887743 4556667777766 46899999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
..+.+|...+.++-|.+.+.-....+|++.++.....+++..
T Consensus 132 ~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~l 173 (748)
T KOG4151|consen 132 KRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGL 173 (748)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999998777766666543
No 315
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.25 E-value=0.21 Score=48.65 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC------------------CHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------------------NATYYSNRAAAYLESGSFLQAEADCTK 385 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~ 385 (442)
+.+.+|...|..-++..+++.|..+++++...-.. +...|..++......|-++.....|++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45667777777777777777777777777654111 234555666666666777777777777
Q ss_pred HHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 386 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
.+.+.--.+....|+|..+.+...+++|.+.|++.+.+.+
T Consensus 503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 7766666666666666666666666666666666666654
No 316
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.06 E-value=0.15 Score=48.05 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
.+...|.+......+.+.|.+-...|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++.+|+++..|..+
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 4677888888888888889999999999999999999999998887777776 9999999999999999998877543
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.02 E-value=0.054 Score=32.41 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 013459 362 YYSNRAAAYLESGSFLQAEADCTKAIN 388 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~ 388 (442)
++.++|.+|..+|++++|+.++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344555555555555555555555544
No 318
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.95 E-value=0.063 Score=32.11 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 356 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 356 (442)
+..+.++|..+...|+|++|+.++++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4578899999999999999999999999863
No 319
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.89 E-value=0.13 Score=49.34 Aligned_cols=74 Identities=16% Similarity=0.105 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 329 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
..++|+.+.+.+-.-+|-.++.+++.+....+-.++.+|..+..+.+.+.|+++|+++++++|++++.-..+-.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 55789999999999999999999999998888889999999999999999999999999999999876554433
No 320
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.87 E-value=0.055 Score=47.73 Aligned_cols=46 Identities=2% Similarity=0.091 Sum_probs=25.1
Q ss_pred ccchHHHHHHHH-HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHH
Q 013459 320 FNQKQSAEIAKE-KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN 365 (442)
Q Consensus 320 ~~~~~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 365 (442)
..+|.+++.|.. -+..++..++++.+...|.+++..+|+++..|+.
T Consensus 135 ~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 135 TKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred hcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 334555555544 3444555556666666666666666666555543
No 321
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.80 E-value=0.7 Score=45.25 Aligned_cols=101 Identities=18% Similarity=0.015 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--KKNVKAYLRRGT 402 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~ 402 (442)
....|...+...-..|-++.....|++.+++.--.+....|.|+.+....-++++.+.|++.+.+. |.-.+.|..+-.
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 345566677777778888889999999999988889999999999999999999999999999987 445566655432
Q ss_pred ---HHHHcCCHHHHHHHHHHHHhhCC
Q 013459 403 ---AREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 403 ---~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
.-+.--+.+.|...|++|++..|
T Consensus 556 kfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 22333468999999999999988
No 322
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.79 E-value=0.39 Score=50.32 Aligned_cols=106 Identities=20% Similarity=0.173 Sum_probs=83.1
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhc-------CHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESG-------SFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 331 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~-------~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
.....++..+.|++|+..|++.-.-.|.. .++.+..|.....+- .+.+|+..|+++.. .|.-+--|...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhH
Confidence 45667788899999999999999988764 467788887765542 47788888877643 35555567778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
|.+|..+|+|++-+++|.-+++..|+.+..-....++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL 595 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 8899999999999999999999999998876555444
No 323
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.72 E-value=0.71 Score=42.93 Aligned_cols=103 Identities=16% Similarity=0.011 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHH---hcCHHHHHHHHHH-HHhcCCccHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL----NGNNATYYSNRAAAYLE---SGSFLQAEADCTK-AINLDKKNVKA 396 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~-~l~~~p~~~~~ 396 (442)
+++...++=..|...++|+.-+++.+..-.+ -++.....+.+|.++-+ .|+.++|+..+.. +....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3445556666778888888888888877666 34556677778888888 8889999999888 44555677888
Q ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCC
Q 013459 397 YLRRGTAREML---------GYYKEAIEDFSYALVLEPTN 427 (442)
Q Consensus 397 ~~~~a~~~~~~---------~~~~~A~~~~~~~l~~~p~~ 427 (442)
+-..|.+|... ...++|+..|.++.+++|+.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 88888887532 13577889999999888653
No 324
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.65 E-value=1.2 Score=38.13 Aligned_cols=79 Identities=16% Similarity=0.053 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhcccHH-------HHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 013459 324 QSAEIAKEKGNQAYKDKQWL-------KAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLD 390 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~-------~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 390 (442)
..+..+..+|..|...++-+ .|++.|.++++.... .....+.+|.++.++|++++|+++|.+++...
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 56778888899998888744 456666666654322 25788899999999999999999999999865
Q ss_pred CccH-HHHHHHHH
Q 013459 391 KKNV-KAYLRRGT 402 (442)
Q Consensus 391 p~~~-~~~~~~a~ 402 (442)
-.+. ..+..+|.
T Consensus 196 ~~s~~~~l~~~AR 208 (214)
T PF09986_consen 196 KASKEPKLKDMAR 208 (214)
T ss_pred CCCCcHHHHHHHH
Confidence 4332 34444443
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.54 E-value=0.51 Score=47.54 Aligned_cols=96 Identities=15% Similarity=0.053 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh----------hCCC----------CHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIK----------LNGN----------NATYYSNRAAAYLESGSFLQAEADCTK 385 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------~~p~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~ 385 (442)
-..|++.|..+-..++.+.|+++|+|+-. -+|. +...|.--|..+...|+.+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 35688999999999999999999998632 2332 445666678888889999999999987
Q ss_pred HHhc---------------------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013459 386 AINL---------------------DKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 421 (442)
Q Consensus 386 ~l~~---------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 421 (442)
+-.. ...+..+.|.+|..|.+.|++.+|+..|.++.
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6443 23566788999999999999999998776654
No 326
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.53 E-value=0.96 Score=42.48 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 386 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 386 (442)
.+..-+..-|..++.+|+|.++.-+-....++.| ++.++..+|.|++..++|++|..++...
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3355677789999999999999999888899999 8999999999999999999999987765
No 327
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.42 E-value=0.67 Score=43.33 Aligned_cols=102 Identities=22% Similarity=0.075 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-CC-C--------------------------------CHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NG-N--------------------------------NATYYSNRAAAY 370 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p-~--------------------------------~~~~~~~~~~~~ 370 (442)
.+...+..+..+...|+..+|+..++..+.. .. . ...++..+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 5678888999999999999999999888871 10 0 134566667666
Q ss_pred HHh------cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhhCCC
Q 013459 371 LES------GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY-----------------KEAIEDFSYALVLEPT 426 (442)
Q Consensus 371 ~~~------~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~-----------------~~A~~~~~~~l~~~p~ 426 (442)
... +..+++++.|+.+++++|...++|+.+|..+.+.-+. ..|+..|-+++.+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 666 7889999999999999999999999999877654221 3488889999999887
No 328
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.42 E-value=0.17 Score=29.27 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCC
Q 013459 395 KAYLRRGTAREMLGYYKEAIED--FSYALVLEPT 426 (442)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~A~~~--~~~~l~~~p~ 426 (442)
+.++.+|-.+...|++++|++. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4556666666666666666666 3355555554
No 329
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.36 E-value=0.95 Score=42.36 Aligned_cols=29 Identities=7% Similarity=0.031 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAI 353 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al 353 (442)
..+.+.+++.++.++|+++.|.+++++|+
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444555555555555555555443
No 330
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.33 E-value=1.8 Score=40.51 Aligned_cols=138 Identities=9% Similarity=-0.065 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----hhhccc-ccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC-CHH-
Q 013459 290 RFLLDTVQNMYASLQEQADI-----ATKSKL-STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-NAT- 361 (442)
Q Consensus 290 ~~ll~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~- 361 (442)
+.+.+....++..+...... ...... .-...++..--.+++.....+.+.|-|..|.+..+-.+.++|. |+-
T Consensus 61 ~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g 140 (360)
T PF04910_consen 61 DLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG 140 (360)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence 34555566666666555532 111111 1123333444456777788889999999999999999999998 653
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHH
Q 013459 362 YYSNRAAAYLESGSFLQAEADCTKAINLDKK-----NVKAYLRRGTAREMLGYY---------------KEAIEDFSYAL 421 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~~a~~~~~~~~~---------------~~A~~~~~~~l 421 (442)
+.+.+-....+.++|+--+..++........ -+..-|..+.++..+++. ++|.+.+++|+
T Consensus 141 ~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai 220 (360)
T PF04910_consen 141 VLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAI 220 (360)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHH
Confidence 4444556667788898888888876652211 235677888899989888 89999999999
Q ss_pred hhCCCC
Q 013459 422 VLEPTN 427 (442)
Q Consensus 422 ~~~p~~ 427 (442)
...|.-
T Consensus 221 ~~fP~v 226 (360)
T PF04910_consen 221 LRFPWV 226 (360)
T ss_pred HHhHHH
Confidence 998853
No 331
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.26 E-value=1.6 Score=39.57 Aligned_cols=108 Identities=24% Similarity=0.106 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhc-------CHHHHHHHHHHHHhcCC
Q 013459 324 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESG-------SFLQAEADCTKAINLDK 391 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~-------~~~~A~~~~~~~l~~~p 391 (442)
..+...+.+|..+.. ..++.+|...|+++.+..... ..+.+.++.+|..-. +.+.|+..|.++....
T Consensus 107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~- 185 (292)
T COG0790 107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG- 185 (292)
T ss_pred ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-
Confidence 345567778888877 559999999999999885443 344788888876641 3447999999988765
Q ss_pred ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459 392 KNVKAYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSAD 435 (442)
Q Consensus 392 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 435 (442)
+..+.+.+|.+|.. ..++++|..+|+++-+... ..+...+.
T Consensus 186 -~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 186 -NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred -CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 77888999988865 3378999999999998876 55555554
No 332
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.23 E-value=0.25 Score=36.11 Aligned_cols=56 Identities=18% Similarity=0.145 Sum_probs=33.5
Q ss_pred HHHhcccHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 013459 335 QAYKDKQWLKAISFYTEAIKLNGNN---------ATYYSNRAAAYLESGSFLQAEADCTKAINLD 390 (442)
Q Consensus 335 ~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 390 (442)
...+.++|.+|++.+.+..+..... ..+..+++.++...|++++|+..+++++++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3456677777777766666542211 2344556666666666666666666666553
No 333
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.14 E-value=2.5 Score=34.44 Aligned_cols=103 Identities=12% Similarity=0.002 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--C--HHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCCccHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--N--ATYYSNRAAAYLESGSFLQAEADCTKAI-NLDKKNVKAYLRRG 401 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l-~~~p~~~~~~~~~a 401 (442)
-+.+..|....+.|+-.+|+..|+++-.-.+- - ..+...-+.++...|.|++.....+.+- ..+|-...+.-.||
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALg 174 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALG 174 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHh
Confidence 35677888999999999999999998765432 1 2345555778888999999877776653 44566677888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 430 (442)
.+..+.|++.+|.+.|+.... +.+.++.
T Consensus 175 lAa~kagd~a~A~~~F~qia~-Da~aprn 202 (221)
T COG4649 175 LAAYKAGDFAKAKSWFVQIAN-DAQAPRN 202 (221)
T ss_pred HHHHhccchHHHHHHHHHHHc-cccCcHH
Confidence 999999999999999998876 4444433
No 334
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.06 E-value=0.65 Score=38.46 Aligned_cols=69 Identities=19% Similarity=0.060 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 393 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 393 (442)
-..-+-..+|++.++.+++++|+..++..... .-.+.....+|.++...|+-++|...|++++..++..
T Consensus 124 lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 124 LKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 34456678999999999999999998864332 1123346678999999999999999999999987544
No 335
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.03 E-value=0.33 Score=35.52 Aligned_cols=58 Identities=22% Similarity=0.292 Sum_probs=46.4
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 369 AYLESGSFLQAEADCTKAINLDKK---------NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~l~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
...+.++|.+|++.+.+....... ...++.++|.++...|++++|++.+++++++...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 356889999998888887755321 1357788999999999999999999999987543
No 336
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.99 E-value=2 Score=39.65 Aligned_cols=103 Identities=17% Similarity=0.097 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC---CCCH---H--HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---GNNA---T--YYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 394 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~---~--~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 394 (442)
|...-++...-......|+|+.|+++.+...+.. ++.. . .+...+.. .-.-+...|..+..+++++.|+..
T Consensus 185 p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s-~ldadp~~Ar~~A~~a~KL~pdlv 263 (531)
T COG3898 185 PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS-LLDADPASARDDALEANKLAPDLV 263 (531)
T ss_pred cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHhhcCCccc
Confidence 4444455555566778899999999988766532 2211 1 11112221 123468888889999999999988
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
.+-..-+.++++.|+..++-+.++.+-+.+|.
T Consensus 264 Paav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 264 PAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred hHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 88888889999999999999999988888774
No 337
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.88 E-value=1 Score=35.63 Aligned_cols=79 Identities=14% Similarity=-0.088 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459 363 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 441 (442)
Q Consensus 363 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 441 (442)
+......-....++.++...+...--+.|+..+.-..-|.++...|++.+|+..|+...+-.+..+..+..+..|.+.+
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 3344455556889999999999998999999999999999999999999999999999998888888888888887654
No 338
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.81 E-value=0.45 Score=42.25 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
...++..++..+...++++.++..+++.+..+|-+..+|..+-..|++.|+...|+..|+++-++
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999998774
No 339
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.75 E-value=0.13 Score=30.10 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 362 YYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
++..+|.+.+..++|++|+.+|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555566666666666655544
No 340
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.51 E-value=1.5 Score=39.09 Aligned_cols=65 Identities=22% Similarity=0.136 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 359 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
...++..++..+...++++.++..+++.+.++|-+-..|..+-.+|...|+...|+..|++.-++
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 34677888999999999999999999999999999999999999999999999999999887764
No 341
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.48 E-value=1.5 Score=43.86 Aligned_cols=93 Identities=18% Similarity=0.117 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhc----c-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCccHHHHHH
Q 013459 328 IAKEKGNQAYKD----K-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLDKKNVKAYLR 399 (442)
Q Consensus 328 ~~~~~a~~~~~~----~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~ 399 (442)
+.+.+|.+|.+. . ++..|+.+|.++.++. ++.+.+.+|.++..-. ++..|.++|..+.+. .+..+.++
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHH
Confidence 466677778774 3 7889999999998875 5677888999988765 678999999999874 46789999
Q ss_pred HHHHHHHc----CCHHHHHHHHHHHHhhC
Q 013459 400 RGTAREML----GYYKEAIEDFSYALVLE 424 (442)
Q Consensus 400 ~a~~~~~~----~~~~~A~~~~~~~l~~~ 424 (442)
++.||..- -+.+.|..++.++.+..
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 99998642 36789999999999887
No 342
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.36 E-value=0.23 Score=46.60 Aligned_cols=106 Identities=9% Similarity=0.113 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|..+......+...-..|+|+++...+..+-..-.....+..-+-..+++++++++|....+..+.-.-++++..---+.
T Consensus 320 ~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~ 399 (831)
T PRK15180 320 QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAG 399 (831)
T ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecc
Confidence 44445555667788888888888887665544433333444455566778888888888888888776667777665666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCh
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNK 428 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~ 428 (442)
....++-++++..++++.+.++|...
T Consensus 400 sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 400 SADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred cHHHHhHHHHHHHHHHHHhccCChhc
Confidence 67788889999999999999887543
No 343
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.33 E-value=1.3 Score=43.82 Aligned_cols=112 Identities=9% Similarity=0.076 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 013459 296 VQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS 375 (442)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 375 (442)
+..+...+.+..........-..-.++....++++++|..+.....|++|.++|.+.-. ..++..|++.+.+
T Consensus 766 Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~ 837 (1189)
T KOG2041|consen 766 AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLEL 837 (1189)
T ss_pred hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHh
Confidence 33344444444444433322222344456678899999999999999999999987632 2456788888888
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013459 376 FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSY 419 (442)
Q Consensus 376 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 419 (442)
|++- +.+...-|++.+.+-.+|.++...|--++|.++|.+
T Consensus 838 f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 838 FGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 8874 444455578888888888888888887777776654
No 344
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=1.6 Score=40.34 Aligned_cols=113 Identities=16% Similarity=0.095 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CC--ccH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINL--DK--KNV 394 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p--~~~ 394 (442)
.+..|+.+...+-..++..+-...+...+.. +.+. ....+.+-.+|...+.|++|.+.-.+..-- .. +..
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~A 247 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWA 247 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHH
Confidence 4556777777777777766555555444432 2222 345556678888999999998887776521 11 235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
..+|.+|.+..-+.+|..|.++|-+|+...|+ ..+.-..+.+.
T Consensus 248 RY~yY~GrIkaiqldYssA~~~~~qa~rkapq-~~alGf~q~v~ 290 (493)
T KOG2581|consen 248 RYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ-HAALGFRQQVN 290 (493)
T ss_pred HHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc-hhhhhHHHHHH
Confidence 67788999999999999999999999999998 34444444443
No 345
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=1.3 Score=41.06 Aligned_cols=99 Identities=18% Similarity=0.116 Sum_probs=79.8
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCC----HHHHH
Q 013459 341 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY----YKEAI 414 (442)
Q Consensus 341 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~----~~~A~ 414 (442)
..++-+.+...+++.+|+...+|+.+..++.+... +..=++.++++++.+|.|..+|...=.+...... ..+-+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 56777888899999999999999999999987764 6888999999999999999988776666544332 45667
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 415 EDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 415 ~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
++..+++.-++.|-.+|.+...+.+
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHH
Confidence 7888888888888888887766654
No 346
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=1.8 Score=38.51 Aligned_cols=39 Identities=10% Similarity=-0.018 Sum_probs=33.4
Q ss_pred HhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 013459 353 IKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391 (442)
Q Consensus 353 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 391 (442)
+..+|++..+.+.++..+...|++++|..++-..++.+-
T Consensus 229 ~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 229 LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 345899999999999999999999999999888887653
No 347
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.10 E-value=0.16 Score=29.71 Aligned_cols=30 Identities=17% Similarity=0.384 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLN 356 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 356 (442)
+.+..+|.+.+..++|++|+..|.+++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999874
No 348
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.08 E-value=3.2 Score=39.49 Aligned_cols=99 Identities=18% Similarity=0.061 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC-CH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-NA--TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------ 393 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~--~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------ 393 (442)
-..+...+-+|.....-+.|++|..+|..+.++-.. +. -+..+++..|...++-+.-.+.++. +.|.|
T Consensus 364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ss 440 (629)
T KOG2300|consen 364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSS 440 (629)
T ss_pred HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchH
Confidence 346677888999999999999999999999987543 32 3445788999987776654444443 33432
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 394 ----VKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 394 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
..++|..|...+.++++.||...+.+.++..
T Consensus 441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 3467788988999999999999999999886
No 349
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.95 E-value=4.6 Score=37.73 Aligned_cols=82 Identities=11% Similarity=-0.061 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhhCCCChHH
Q 013459 359 NATYYSNRAAAYLESGSFLQAEADCTKAINL----DKKNVKAYLRRGTAREM---LGYYKEAIEDFSY-ALVLEPTNKRA 430 (442)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~-~l~~~p~~~~~ 430 (442)
+.+...++-.+|...++|+.-++..+..-.+ -++.+...+.+|.++.+ .|+.++|++.+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4567778888999999999999999988777 45667788899999998 9999999999999 56667788888
Q ss_pred HHHHHHHHhh
Q 013459 431 SLSADRLRKV 440 (442)
Q Consensus 431 ~~~l~~~~~~ 440 (442)
+-.++++.|-
T Consensus 220 ~gL~GRIyKD 229 (374)
T PF13281_consen 220 LGLLGRIYKD 229 (374)
T ss_pred HHHHHHHHHH
Confidence 8888888764
No 350
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.87 E-value=0.16 Score=26.86 Aligned_cols=20 Identities=30% Similarity=0.081 Sum_probs=8.4
Q ss_pred HHHHHHHHHhcCHHHHHHHH
Q 013459 364 SNRAAAYLESGSFLQAEADC 383 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~A~~~~ 383 (442)
+.+|..+..+|++++|...+
T Consensus 5 ~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 33444444444444444433
No 351
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.84 E-value=2.8 Score=37.76 Aligned_cols=102 Identities=17% Similarity=0.104 Sum_probs=73.4
Q ss_pred HHhcccHHHHHHHHHHHHhhC----CCC----HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhc----CC------c----
Q 013459 336 AYKDKQWLKAISFYTEAIKLN----GNN----ATYYSNRAAAYLESG-SFLQAEADCTKAINL----DK------K---- 392 (442)
Q Consensus 336 ~~~~~~~~~A~~~~~~al~~~----p~~----~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~----~p------~---- 392 (442)
..++|+++.|.-++.|+-... |+. ...+++.|....+.+ ++++|..++++++++ .. +
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999986654 332 457888899999999 999999999999877 21 1
Q ss_pred cHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCChHHH-HHHHHH
Q 013459 393 NVKAYLRRGTAREMLGYYK---EAIEDFSYALVLEPTNKRAS-LSADRL 437 (442)
Q Consensus 393 ~~~~~~~~a~~~~~~~~~~---~A~~~~~~~l~~~p~~~~~~-~~l~~~ 437 (442)
....+..++.+|.+.+.++ +|...++.+-.-.|+.+... ..+.-+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il 131 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEIL 131 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 1346677899998888765 45556666666667766655 444333
No 352
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.59 E-value=0.66 Score=28.23 Aligned_cols=25 Identities=20% Similarity=0.066 Sum_probs=19.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 013459 398 LRRGTAREMLGYYKEAIEDFSYALV 422 (442)
Q Consensus 398 ~~~a~~~~~~~~~~~A~~~~~~~l~ 422 (442)
+.+|.+|.++|+++.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677778888888888888877774
No 353
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.55 E-value=2 Score=42.90 Aligned_cols=111 Identities=20% Similarity=0.076 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHh-----cccHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhc
Q 013459 325 SAEIAKEKGNQAYK-----DKQWLKAISFYTEAIKL-----NGNNATYYSNRAAAYLESG-----SFLQAEADCTKAINL 389 (442)
Q Consensus 325 ~~~~~~~~a~~~~~-----~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~l~~ 389 (442)
.......+|.+++. .+|.+.|+.+|+.+.+. .-.++.+.+.+|.+|.+-. +++.|+.+|.++-.+
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 44556666666654 46899999999999771 1125567889999998843 788899999999886
Q ss_pred CCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 390 DKKNVKAYLRRGTAREMLG---YYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 390 ~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
. ++.+.+.+|.++..-. ++..|.++|..|.+.. +..+...++.|..
T Consensus 323 g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~ 371 (552)
T KOG1550|consen 323 G--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYE 371 (552)
T ss_pred C--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHH
Confidence 5 5668889999987655 5789999999987653 4455556655543
No 354
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.53 E-value=0.48 Score=27.41 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=9.8
Q ss_pred HHHHHHHHHhcccHHHHHHH
Q 013459 329 AKEKGNQAYKDKQWLKAISF 348 (442)
Q Consensus 329 ~~~~a~~~~~~~~~~~A~~~ 348 (442)
++.+|..++++|+|++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555555555
No 355
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.43 E-value=1 Score=33.62 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=55.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCccH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCChHHH
Q 013459 366 RAAAYLESGSFLQAEADCTKAINLDKKNV---KAYLRRGTAREMLGY-----------YKEAIEDFSYALVLEPTNKRAS 431 (442)
Q Consensus 366 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~~l~~~p~~~~~~ 431 (442)
++.-+++.|++-+|++..+..+..++++. -.+...|.++.++.. .-.++++|.++..+.|+.+...
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46678899999999999999998887765 455566888766553 2458899999999999987766
Q ss_pred HHHHH
Q 013459 432 LSADR 436 (442)
Q Consensus 432 ~~l~~ 436 (442)
..++.
T Consensus 82 ~~la~ 86 (111)
T PF04781_consen 82 FELAS 86 (111)
T ss_pred HHHHH
Confidence 65554
No 356
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.36 E-value=0.63 Score=41.88 Aligned_cols=62 Identities=21% Similarity=0.116 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459 345 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406 (442)
Q Consensus 345 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 406 (442)
|..+|.+|+.+.|++-..|+.+|.++...++.-+|+-+|-|++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997665567888888888877
No 357
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.09 E-value=0.67 Score=40.86 Aligned_cols=57 Identities=25% Similarity=0.186 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013459 364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA 420 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 420 (442)
...+..|...|.+.+|++..++++.++|-+.+.+..+-.++...|+--.+.+.|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334566677777777777777777777777777777777777777766666666554
No 358
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.07 E-value=0.24 Score=26.14 Aligned_cols=24 Identities=25% Similarity=0.038 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 013459 395 KAYLRRGTAREMLGYYKEAIEDFS 418 (442)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~A~~~~~ 418 (442)
.+.+.+|.++..+|+.++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998876
No 359
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.05 E-value=0.66 Score=41.75 Aligned_cols=61 Identities=21% Similarity=0.127 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 379 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 379 A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
|+.+|.+|..+.|.+...+..+|.++...++.=+|+-+|-+++...--.+.+..++..+-+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~ 61 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999877666778777776654
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.96 E-value=1.5 Score=30.35 Aligned_cols=60 Identities=15% Similarity=0.017 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVK---AYLRRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
...|.=+++.++.++|+..++++++..++... ++-.+..+|.+.|+|++.+++-.+-+++
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566888999999999999988776654 4445667889999999988775554443
No 361
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.94 E-value=6.1 Score=38.68 Aligned_cols=110 Identities=12% Similarity=0.019 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRG 401 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a 401 (442)
+.+...|......-...|+++...-+|++++---..+...|...+......|+.+-|-..+.++.+.. +..+..+...+
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 45566788888888899999999999999998888888999999998888999999999999888775 55667777778
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASL 432 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 432 (442)
..-...|++..|...+++..+-.|+.-.+-.
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l 404 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGLVEVVL 404 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCchhhhHH
Confidence 8888899999999999999988887665543
No 362
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.81 E-value=3 Score=38.59 Aligned_cols=96 Identities=13% Similarity=0.011 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH--HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY--LESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
.+-+....++...-.|+|++|.+.|+..+. +|+. ...-.+|..+ ..+|..+.|+.+.+++....|.-+=++...-.
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe 196 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE 196 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 344566678888899999999999987664 3432 2222334332 45789999999999999999987666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 013459 403 AREMLGYYKEAIEDFSYALV 422 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~ 422 (442)
.....|+.+.|++.++...+
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHhcCChHHHHHHHHHHHH
Confidence 67889999999998876554
No 363
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.71 E-value=4.3 Score=38.66 Aligned_cols=95 Identities=20% Similarity=0.042 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhhC---CCC----HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCccH
Q 013459 324 QSAEIAKEKGNQAY-KDKQWLKAISFYTEAIKLN---GNN----ATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNV 394 (442)
Q Consensus 324 ~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~---p~~----~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~ 394 (442)
-++....++|..++ -..+++.|..+++++..+. |.. ..++..++.+|.+.. .+..+...+++++++...++
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 34555666776665 4678888999999887763 222 356777888888887 78888888899988876553
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHH
Q 013459 395 ----KAYLRRGTAREMLGYYKEAIEDFS 418 (442)
Q Consensus 395 ----~~~~~~a~~~~~~~~~~~A~~~~~ 418 (442)
+.++.++..+.-..++..|.+.+.
T Consensus 124 ~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 124 YWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred hhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 456778888888888888887743
No 364
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.67 E-value=0.85 Score=40.23 Aligned_cols=62 Identities=11% Similarity=0.046 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 388 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 388 (442)
..+...+..|...|.+.+|+++.++++.++|-+...+..+-..+..+|+--+++++|++.-+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 45666788999999999999999999999999999999999999999999999999887543
No 365
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=91.66 E-value=0.82 Score=36.14 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS 375 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 375 (442)
.+.....+...+..|+|+.|.++.+.++..+|++..+...++.++.+++.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999999999999999999888888877664
No 366
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=91.59 E-value=1.1 Score=43.02 Aligned_cols=106 Identities=12% Similarity=0.056 Sum_probs=81.3
Q ss_pred ccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Q 013459 316 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 395 (442)
Q Consensus 316 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 395 (442)
.+.+.++|.+...|+.+-+.+-.+ .+++..+.|++.+...|..+.+|.......+..++|+...+.|.|+|..- -+.+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-LnlD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNLD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhHh
Confidence 446788899999999998888777 99999999999999999999999999999999999999999999998642 2355
Q ss_pred HHHH-HHHHHHHcCCHHHH----HHHHHHHHhh
Q 013459 396 AYLR-RGTAREMLGYYKEA----IEDFSYALVL 423 (442)
Q Consensus 396 ~~~~-~a~~~~~~~~~~~A----~~~~~~~l~~ 423 (442)
.|.. +..+....++...+ .+.|+-+++.
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~k 120 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEK 120 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHH
Confidence 5543 34444555554443 3455555554
No 367
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.46 E-value=4.2 Score=30.80 Aligned_cols=66 Identities=14% Similarity=0.006 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHh-------hCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK-------LNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-------~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
.++.-+-.++..+...|+|++++...++++. ++.+. ..+.++++..+..+|+.++|++.|+++-+.
T Consensus 53 FDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 53 FDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3555566788899999999998887777775 34444 346678999999999999999999988653
No 368
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.39 E-value=6 Score=35.74 Aligned_cols=56 Identities=11% Similarity=-0.125 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013459 365 NRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRGTAREMLGYYKEAIEDFSYA 420 (442)
Q Consensus 365 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~ 420 (442)
.+++|..++|+..+|++.++.+.+-.|-. ...+-++-.++.++.-|.+....+-+.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677777777777777777776665532 234444555555555454444444333
No 369
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.90 E-value=3.3 Score=47.05 Aligned_cols=116 Identities=15% Similarity=0.082 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc---------
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KK--------- 392 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~--------- 392 (442)
...++.|.+.|+...+.|+++.|...+-+|.+.. -+.++..+|..+.+.|+-..|+..+++.+..+ |+
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccc
Confidence 5677889999999999999999999999888876 56788999999999999999999999999664 22
Q ss_pred -c------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 393 -N------VKAYLRRGTAREMLGYY--KEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 393 -~------~~~~~~~a~~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
. ..+.+.++.-..+.+++ ++-+++|..+.+..|....-+.++++....
T Consensus 1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
Confidence 1 12445555555566664 356788999999999877777777755443
No 370
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=0.19 Score=45.37 Aligned_cols=83 Identities=17% Similarity=0.017 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 406 (442)
....+.+.+.++.+.+..|+..-..++..++....+++.+++.+..+.++++|+++++.+....|++.+....+...-..
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 34556888899999999999998888888888899999999999999999999999999999999998776655544444
Q ss_pred cCC
Q 013459 407 LGY 409 (442)
Q Consensus 407 ~~~ 409 (442)
..+
T Consensus 356 ~~~ 358 (372)
T KOG0546|consen 356 KKQ 358 (372)
T ss_pred HHH
Confidence 433
No 371
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.62 E-value=3.8 Score=34.39 Aligned_cols=73 Identities=14% Similarity=0.023 Sum_probs=53.1
Q ss_pred cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHcCCHHHHH
Q 013459 341 QWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----NVKAYLRRGTAREMLGYYKEAI 414 (442)
Q Consensus 341 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~~a~~~~~~~~~~~A~ 414 (442)
.=++|...|-++-... =+++...+.+|..|. ..+.++++..+-+++++... |++.+..++.++.++++++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3345666555443321 246778888887664 77889999999999988643 4888999999999999998874
No 372
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=90.26 E-value=10 Score=34.32 Aligned_cols=85 Identities=22% Similarity=0.087 Sum_probs=67.6
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcC--------
Q 013459 341 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-------- 408 (442)
Q Consensus 341 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~-------- 408 (442)
+...|...|.++.... +..+.+.+|.+|.. ..++++|+.+|+++.+... ..+++.++ ++...|
T Consensus 170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 3357889999988776 78889999988865 3489999999999999876 88899999 666666
Q ss_pred -------CHHHHHHHHHHHHhhCCCChHH
Q 013459 409 -------YYKEAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 409 -------~~~~A~~~~~~~l~~~p~~~~~ 430 (442)
+...|...+.++....+.....
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 273 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDNACE 273 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChhHHH
Confidence 7778888888888776655443
No 373
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.18 E-value=3.6 Score=36.34 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013459 362 YYSNRAAAYLESGSFLQAEADCTKAINLDKK------NVKAYLRRGTAREMLGYYKEAIEDFSYAL 421 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 421 (442)
....+|.-|++.|+|++|++.|+++....-. ....+..+-.|+..+|+.++.+...-+++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4456788888888888888888888654321 24466667778888888877776654443
No 374
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.04 E-value=2.1 Score=43.47 Aligned_cols=64 Identities=22% Similarity=0.098 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH----------HhcCCc----------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013459 360 ATYYSNRAAAYLESGSFLQAEADCTKA----------INLDKK----------NVKAYLRRGTAREMLGYYKEAIEDFSY 419 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~A~~~~~~~----------l~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~ 419 (442)
...|++.+..+...++.+.|+++|+++ ++-+|. +...|...|.-+...|+++.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 357888899899999999999999974 333342 345666788889999999999999988
Q ss_pred HHhh
Q 013459 420 ALVL 423 (442)
Q Consensus 420 ~l~~ 423 (442)
+-..
T Consensus 938 A~D~ 941 (1416)
T KOG3617|consen 938 AKDY 941 (1416)
T ss_pred hhhh
Confidence 7654
No 375
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.90 E-value=8 Score=36.04 Aligned_cols=97 Identities=19% Similarity=0.107 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------C-cc
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLD-------K-KN 393 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------p-~~ 393 (442)
.-..+..+|..|...|+++.|++.|.++-...-. ....+.+.-.+....++|.....+-.++.+.- + -.
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 3467889999999999999999999996554332 24667788888888999998888888877651 0 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013459 394 VKAYLRRGTAREMLGYYKEAIEDFSYAL 421 (442)
Q Consensus 394 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l 421 (442)
.......|.+...+++|+.|.++|-.+.
T Consensus 229 ~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2344556777888889999999887654
No 376
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.89 E-value=12 Score=35.08 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhcccH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh------------cCHHHHHHHHHHHHhcCCccH
Q 013459 328 IAKEKGNQAYKDKQW-LKAISFYTEAIKLNGNNATYYSNRAAAYLES------------GSFLQAEADCTKAINLDKKNV 394 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~------------~~~~~A~~~~~~~l~~~p~~~ 394 (442)
..+.+-....+.+.| .+++++-.+.++.+|+...+|+.+=.++... ...++-+.....+++.+|+.-
T Consensus 30 ~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY 109 (421)
T KOG0529|consen 30 SLFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSY 109 (421)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhH
Confidence 334444445556666 4577777888888998877776554333222 235566677788899999999
Q ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 395 KAYLRRGTAREMLGY--YKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 395 ~~~~~~a~~~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
-+|+.+..++.+... +..-++.++++++.+|.|-.+|.+...+-.
T Consensus 110 ~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~ 156 (421)
T KOG0529|consen 110 GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVE 156 (421)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHH
Confidence 999999999987774 688899999999999999999988776654
No 377
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.65 E-value=12 Score=31.90 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=55.7
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Q 013459 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 394 (442)
Q Consensus 331 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 394 (442)
.....+++.++.++|+...+.-++-+|.+......+-.++.-.|+|++|...++-+-.+.|++.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3455678889999999999999999999998888889999999999999999999988888763
No 378
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.56 E-value=7.1 Score=32.40 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
..++..+|..|.+.|++++|++.|.++....-. ..+.++++-.+....+++.....++.++-.+-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999998876432 356778888889999999999999988876643
No 379
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.47 E-value=4.4 Score=39.55 Aligned_cols=90 Identities=20% Similarity=0.052 Sum_probs=73.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 013459 345 AISFYTEAIKLNGNNATYYSN--RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSY-AL 421 (442)
Q Consensus 345 A~~~~~~al~~~p~~~~~~~~--~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~l 421 (442)
++..+...+.+++.++..+.. +...+...++...+....+.++..+|++..+..+++.++...|....+...+.+ +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 566666677788888776443 478888889999999999999999999999999999998887777666666555 89
Q ss_pred hhCCCChHHHHHH
Q 013459 422 VLEPTNKRASLSA 434 (442)
Q Consensus 422 ~~~p~~~~~~~~l 434 (442)
...|++.+....+
T Consensus 130 ~~~~~~~~~~~~~ 142 (620)
T COG3914 130 WLSPDNAEFLGHL 142 (620)
T ss_pred hcCcchHHHHhhH
Confidence 9999999887777
No 380
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=89.10 E-value=4.9 Score=38.85 Aligned_cols=74 Identities=14% Similarity=0.040 Sum_probs=65.7
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 350 TEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 350 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
++-++.+|.+..+|+.+-.-+..+ -+++....|++.+...|..+.+|..........++|+.-.+.|.+|+..-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 667889999999999988866444 99999999999999999999999999999999999999999999998643
No 381
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=89.00 E-value=2.6 Score=40.48 Aligned_cols=73 Identities=14% Similarity=-0.032 Sum_probs=62.4
Q ss_pred cchHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Q 013459 321 NQKQSAEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 393 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 393 (442)
..|.....+.+++..+++. |+.-.|+.....+++++|....+++.++.++.+++++.+|+.+...+....|.+
T Consensus 403 ~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 403 YVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred hccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 3356667777888888775 477778899999999999999999999999999999999999998888888844
No 382
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.00 E-value=1.8 Score=36.31 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhcCHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQAEA 381 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~A~~ 381 (442)
+.++..+.+|..|. ..+-+.++.++.+++++... +++.+..++.++.+++++++|--
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 45667777777766 77899999999999998554 48999999999999999999853
No 383
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.91 E-value=7 Score=34.51 Aligned_cols=64 Identities=8% Similarity=0.031 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAI 387 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l 387 (442)
.......++|..|++.|+|++|+++|+.+....... ......+..|+.++|+.+..+...-+++
T Consensus 176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345667799999999999999999999997664432 4567778899999999999888876654
No 384
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.83 E-value=3.1 Score=28.68 Aligned_cols=31 Identities=26% Similarity=0.187 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 355 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 355 (442)
.+..+...|..+=+.|++++|+.+|+++++.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4555666777777777777777776666543
No 385
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=88.82 E-value=1.5 Score=46.80 Aligned_cols=103 Identities=14% Similarity=0.052 Sum_probs=83.1
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--- 390 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--- 390 (442)
+|+.+..+..++..+.+.+++++|+..-.++.-+ .|+....|.+++...+..++...|++.+.+++.+.
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 4777888999999999999999999987766543 34556788899999999999999999998887652
Q ss_pred -----CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 391 -----KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 391 -----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
|.-.....+++.++...++++.|+++++.|+...
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3333455677888888899999999999998753
No 386
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.82 E-value=5.9 Score=39.13 Aligned_cols=72 Identities=11% Similarity=-0.001 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459 362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 433 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 433 (442)
.+-+-+.-+++.++|..++++|...++.-|.+ .+....++.||.++.+.+.|.+++++|-+.+|.++-.+..
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 34455777889999999999999998876644 4566778999999999999999999999999988765443
No 387
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.79 E-value=30 Score=35.29 Aligned_cols=109 Identities=16% Similarity=0.058 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhhCCC--CH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---
Q 013459 323 KQSAEIAKEKGNQAY-KDKQWLKAISFYTEAIKLNGN--NA----TYYSNRAAAYLESGSFLQAEADCTKAINLDKK--- 392 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~--~~----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--- 392 (442)
..++...+++|..++ ...++++|..+++|++.+... .. .+.+.++.++.+.+... |.+.+++.++....
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~ 134 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence 457888999999998 788999999999999887643 22 33456678887777666 99999999877544
Q ss_pred -cHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhC--CCChHHHH
Q 013459 393 -NVKAYLRRG--TAREMLGYYKEAIEDFSYALVLE--PTNKRASL 432 (442)
Q Consensus 393 -~~~~~~~~a--~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 432 (442)
.....+.+- ..+...+++..|.+.+++..... ..++.+..
T Consensus 135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 222223332 22223479999999999988876 34444433
No 388
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=88.39 E-value=8.4 Score=38.17 Aligned_cols=58 Identities=14% Similarity=0.046 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 384 (442)
.+...+..|..+-.-++.++|-.+|++.+..+|+ ..++..+.-+.+.|-...|...+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 41 TSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 3344444455555555555555555555555444 334444444444444444444433
No 389
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.12 E-value=9 Score=39.46 Aligned_cols=100 Identities=15% Similarity=0.063 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-- 393 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-- 393 (442)
.+......+..+..+.+|.+|..+..++...-+. .....-.++.+....+++++|++..+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3444556688888899999999998888765443 13444557888899999999999999999887765
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 394 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 394 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
..++...|.+..-.|++++|..+.+.+.+..
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 3467778999999999999999988887763
No 390
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=86.97 E-value=2.1 Score=23.41 Aligned_cols=29 Identities=17% Similarity=0.052 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 409 YYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 409 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
+.+.+...|++++...|.+...|......
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 44555555555555555555555544433
No 391
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=86.94 E-value=16 Score=34.67 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=15.1
Q ss_pred HHHcCCHHHHHHHHHHHHhh
Q 013459 404 REMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 404 ~~~~~~~~~A~~~~~~~l~~ 423 (442)
-...|+|++|+..+=+++++
T Consensus 251 Ra~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 251 RAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHH
Confidence 34578899998887777765
No 392
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.77 E-value=4.1 Score=34.54 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=57.7
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459 369 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA 434 (442)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 434 (442)
-+.+.++..+|++..+.-++-+|.+......+-++|.-.|++++|...++-+-++.|+.......+
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~ly 75 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLY 75 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHH
Confidence 456788999999999999999999998888888999999999999999999999999876544333
No 393
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.24 E-value=19 Score=34.51 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=73.5
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHH
Q 013459 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE 412 (442)
Q Consensus 333 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~ 412 (442)
-...+..|+...|.+-+..++...|.++.....++.++.++|+|+++.+.+..+-..-..-..+...+-..+..+++.++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 34556789999999999999999999999999999999999999999998876654433334455555566778888888
Q ss_pred HHHHHHHHHhhCCCCh
Q 013459 413 AIEDFSYALVLEPTNK 428 (442)
Q Consensus 413 A~~~~~~~l~~~p~~~ 428 (442)
|...-+-.+.-.-+++
T Consensus 376 a~s~a~~~l~~eie~~ 391 (831)
T PRK15180 376 ALSTAEMMLSNEIEDE 391 (831)
T ss_pred HHHHHHHHhccccCCh
Confidence 8877766665444433
No 394
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=86.04 E-value=1.6 Score=41.18 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=57.0
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 331 EKGNQAYKDKQWLKAISFYTEAIKLN---------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 331 ~~a~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.+.+.+.-.|||..|++.++.. +++ +-+...++..|.+|+-+++|.+|++.|...+..-......+....
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~ 205 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRS 205 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 4556667789999998887643 222 223567788899999999999999999888753211111111111
Q ss_pred HHHH-HcCCHHHHHHHHHHHHhhCCC
Q 013459 402 TARE-MLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 402 ~~~~-~~~~~~~A~~~~~~~l~~~p~ 426 (442)
.-+. -.+..++....+--|+.+.|.
T Consensus 206 ~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 206 YQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred chhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 1111 123345555556666777774
No 395
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=85.38 E-value=8 Score=35.11 Aligned_cols=98 Identities=16% Similarity=0.103 Sum_probs=72.0
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013459 341 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKNVKAYLRRGTAREMLGYYKEAIEDFS 418 (442)
Q Consensus 341 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 418 (442)
+|.+-..+|+-.....| ++..-.|++....+..-.+.++...+.+... -.....++-..|..+.++|+.++|...|+
T Consensus 311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 66666666666655555 4455567777777777778888877776654 22344566667899999999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHh
Q 013459 419 YALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 419 ~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+++.+.++..+......++..
T Consensus 390 rAi~La~~~aer~~l~~r~~~ 410 (415)
T COG4941 390 RAIALARNAAERAFLRQRLDR 410 (415)
T ss_pred HHHHhcCChHHHHHHHHHHHH
Confidence 999999998887776666554
No 396
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=83.15 E-value=3.7 Score=22.32 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=12.3
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013459 341 QWLKAISFYTEAIKLNGNNATYYSNR 366 (442)
Q Consensus 341 ~~~~A~~~~~~al~~~p~~~~~~~~~ 366 (442)
+++.+...|++++...|.+...|...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 34444455555555555444444433
No 397
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=81.91 E-value=12 Score=29.16 Aligned_cols=56 Identities=18% Similarity=0.074 Sum_probs=38.9
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 369 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
...+.++-++-.+.+..+.+.+..+++.++.+|.+|.++|+..+|.+.+.+|-+..
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 44566777777777777776666789999999999999999999999999887643
No 398
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.85 E-value=10 Score=35.73 Aligned_cols=96 Identities=19% Similarity=0.148 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhh-----------CCCCHHHHHHHHHHHHHhcCH----------HHHHHHHHHH
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIKL-----------NGNNATYYSNRAAAYLESGSF----------LQAEADCTKA 386 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~-----------~p~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~ 386 (442)
-++..|+.+++...|++|+.++-.|=+. -.+++-.-...-+||+.+++. ..|.+.|.++
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 3455566666666677766665444332 223333444556788887753 2333333332
Q ss_pred H--------hcC-CccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 387 I--------NLD-KKNV------KAYLRRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 387 l--------~~~-p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
. .+. +..+ ..+...|.+.+.+|+.++|.++++.+...
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 2 111 2222 23444688999999999999999887654
No 399
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=81.77 E-value=26 Score=28.33 Aligned_cols=111 Identities=13% Similarity=0.039 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCCcc----HHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLESGS----FLQAEADCTKAINLDKKN----VKA 396 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~----~~~A~~~~~~~l~~~p~~----~~~ 396 (442)
-+..+.-..-...++|.||.+++.+.++... +...+|.+++.|.+-..+ ++.-.+.-+.+..-+..+ ..+
T Consensus 94 iA~leqva~kis~~~~~eaK~LlnkIi~nk~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatA 173 (220)
T PF10858_consen 94 IAALEQVAIKISEKKYSEAKQLLNKIIENKEYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATA 173 (220)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHHHH
Confidence 3455555666788999999999999998743 345788888888877654 333333333322222222 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 397 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
-...+..-.+.|.-.+|++.++..+..+..+.....+...+
T Consensus 174 tI~kaiwdik~nm~~~aeknL~~l~~Snn~SdllKdQAKaL 214 (220)
T PF10858_consen 174 TIIKAIWDIKNNMKNQAEKNLKNLLASNNVSDLLKDQAKAL 214 (220)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 44456666788889999999999988776555555444444
No 400
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=81.72 E-value=8.5 Score=36.41 Aligned_cols=33 Identities=9% Similarity=0.029 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 355 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 355 (442)
+-....++..|-+|+..++|.+|++.|..++..
T Consensus 161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred chheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567899999999999999999999998753
No 401
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=81.67 E-value=5.6 Score=31.48 Aligned_cols=53 Identities=30% Similarity=0.279 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHH
Q 013459 360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE 412 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~ 412 (442)
.+.....+.-.+..|++.-|...++.++..+|+|.++...++.+|.+++...+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 45566678888899999999999999999999999999999999998886544
No 402
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.50 E-value=8.8 Score=32.32 Aligned_cols=49 Identities=20% Similarity=0.114 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 377 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 377 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
+..++..++.++..| ++..+.+++.++..+|+.++|.+..+++..+.|.
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344445555565555 4556666677777777777777777777777763
No 403
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.47 E-value=34 Score=30.47 Aligned_cols=94 Identities=11% Similarity=-0.078 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHhcC
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNNATYYSNRAAAYLESGS--------FLQAEADCTKAINLD 390 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~l~~~ 390 (442)
+-.+.++.=+..+++.+++.-|.++..-.++. .+.+.....++..+...... .+.|+++- +.-...
T Consensus 8 eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~ 86 (260)
T PF04190_consen 8 EAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYK 86 (260)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-T
T ss_pred HHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCC
Confidence 44566777777788888887776665544443 23344444556665555442 23444443 111112
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013459 391 KKNVKAYLRRGTAREMLGYYKEAIEDFS 418 (442)
Q Consensus 391 p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 418 (442)
-.+++.+..+|..|.+.+++.+|..+|-
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 2457888888999999999988887763
No 404
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=81.28 E-value=7.6 Score=37.54 Aligned_cols=82 Identities=20% Similarity=0.149 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 404 (442)
+...|.++|...+++|+++-|.++|+++-. +..+..+|...|+-+.-.+..+.+......+.. -.++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~a-----f~~~ 412 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGDINIA-----FQAA 412 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHH-----HHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccCHHHH-----HHHH
Confidence 445777788888888888888777776532 345566677777766555555555443332211 1344
Q ss_pred HHcCCHHHHHHHHHH
Q 013459 405 EMLGYYKEAIEDFSY 419 (442)
Q Consensus 405 ~~~~~~~~A~~~~~~ 419 (442)
..+|++++..+.+.+
T Consensus 413 ~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 413 LLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHT-HHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 556666666665544
No 405
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=80.81 E-value=26 Score=33.96 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcccHHHHHHH-------HHHHHhh-----------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 013459 329 AKEKGNQAYKDKQWLKAISF-------YTEAIKL-----------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390 (442)
Q Consensus 329 ~~~~a~~~~~~~~~~~A~~~-------~~~al~~-----------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 390 (442)
....+..+.++|.++.|+.. |+-|+++ .-++...|..+|...+..|+++-|+++|+++-..+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~ 377 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFS 377 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc
Confidence 44556666666666666654 3333332 23456677777777777777777777777653221
Q ss_pred --------CccHHHHHHHHHHHHHcCCHHHHH
Q 013459 391 --------KKNVKAYLRRGTAREMLGYYKEAI 414 (442)
Q Consensus 391 --------p~~~~~~~~~a~~~~~~~~~~~A~ 414 (442)
-.+.+.+..++......|++.-|.
T Consensus 378 ~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af 409 (443)
T PF04053_consen 378 GLLLLYSSTGDREKLSKLAKIAEERGDINIAF 409 (443)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHhCCHHHHHHHHHHHHHccCHHHHH
Confidence 233444445555555555554443
No 406
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.70 E-value=34 Score=33.39 Aligned_cols=65 Identities=15% Similarity=-0.058 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC---C----ccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCC
Q 013459 363 YSNRAAAYLESGSFLQAEADCTKAINLD---K----KNVKAYLRRGTAREMLGY-YKEAIEDFSYALVLEPTN 427 (442)
Q Consensus 363 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p----~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~ 427 (442)
+..+|.++..+|+...|..+|..+++.. - -.+-++|.+|..|..++. ..++.+++.+|-+...+.
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 4567999999999999999999887331 1 126799999999999999 999999999998877553
No 407
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=80.16 E-value=5.8 Score=34.25 Aligned_cols=103 Identities=14% Similarity=0.015 Sum_probs=57.1
Q ss_pred HhcccHHHHHHHHHHHHhhCCCCHH------------HHHHHHHHHHHhcCH-HHH-HHHHHHHHh-cC-CccHHHH--H
Q 013459 337 YKDKQWLKAISFYTEAIKLNGNNAT------------YYSNRAAAYLESGSF-LQA-EADCTKAIN-LD-KKNVKAY--L 398 (442)
Q Consensus 337 ~~~~~~~~A~~~~~~al~~~p~~~~------------~~~~~~~~~~~~~~~-~~A-~~~~~~~l~-~~-p~~~~~~--~ 398 (442)
+..|+|+.|++....+|+.+-..++ -...-+......|+. +-. ...+..+.. .+ |+...+- -
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 5579999999999999987532211 122223333344431 111 112222221 11 3444333 3
Q ss_pred HHHHHHH---------HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 399 RRGTARE---------MLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 399 ~~a~~~~---------~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
..|..+. ..++.+.|..+++++++++|+.. ....+.++.+.
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G-VK~~i~~l~~~ 223 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG-VKKDIERLERR 223 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHH
Confidence 3465552 34577899999999999998753 44444555443
No 408
>PF12854 PPR_1: PPR repeat
Probab=79.39 E-value=5.8 Score=22.40 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH
Q 013459 361 TYYSNRAAAYLESGSFLQAEADCTK 385 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~A~~~~~~ 385 (442)
..|..+-..|.+.|+.++|++.|++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4455555556666666666655543
No 409
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.28 E-value=4.2 Score=24.72 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=13.9
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHH
Q 013459 330 KEKGNQAYKDKQWLKAISFYTEAI 353 (442)
Q Consensus 330 ~~~a~~~~~~~~~~~A~~~~~~al 353 (442)
+.+|..|+..|+++.|.+.+++.+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 345555566666666666665555
No 410
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=79.16 E-value=70 Score=31.71 Aligned_cols=116 Identities=12% Similarity=-0.041 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--cc----HHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KN----VKA 396 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~----~~~ 396 (442)
+.........+..--.+|++..|..++++..+-.|....+-.........+|+.+.+....+......+ .+ ...
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l 442 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKL 442 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHH
Confidence 334445566677777889999999999999998888888877788888888988888742222222221 11 234
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 397 YLRRGTA-REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 397 ~~~~a~~-~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
+...+.. +.-.++.+.|...+.++++..|++...+..+-.+.
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 4445554 45677899999999999999999988877766554
No 411
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.08 E-value=6.3 Score=34.57 Aligned_cols=25 Identities=12% Similarity=-0.049 Sum_probs=16.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
.+|.+|+..++|.+-.+.+++....
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHH
Confidence 4677777777777666666555443
No 412
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=78.57 E-value=20 Score=38.09 Aligned_cols=104 Identities=15% Similarity=0.094 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHh-------cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459 327 EIAKEKGNQAYK-------DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399 (442)
Q Consensus 327 ~~~~~~a~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 399 (442)
++.+..|..+.. ...+++|+..|++.- -.|.-+--|...+.+|..+++|+|-++.|.-+++..|+.++.-..
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (932)
T PRK13184 513 EAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRL 591 (932)
T ss_pred HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHH
Confidence 445555555543 246778888877643 234455667888999999999999999999999999988775433
Q ss_pred HHHHHHHcC-----CHHHHHHHHHHHHhhCCCChHHH
Q 013459 400 RGTAREMLG-----YYKEAIEDFSYALVLEPTNKRAS 431 (442)
Q Consensus 400 ~a~~~~~~~-----~~~~A~~~~~~~l~~~p~~~~~~ 431 (442)
.-.+-+++. +...|.....-++...|.+....
T Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (932)
T PRK13184 592 RDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSR 628 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccch
Confidence 322222222 23456666677777888765443
No 413
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=78.30 E-value=48 Score=29.70 Aligned_cols=50 Identities=14% Similarity=0.004 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHHHHhhC-CC-----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 340 KQWLKAISFYTEAIKLN-GN-----NATYYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 340 ~~~~~A~~~~~~al~~~-p~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
+.-++-++.+++.++.. .+ -.+++.++|..|.+.++.+.+.+++.+.++.
T Consensus 89 kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~ 144 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRD 144 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34445555554444332 11 2567788888888888888888877776654
No 414
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=77.95 E-value=12 Score=28.57 Aligned_cols=65 Identities=20% Similarity=0.155 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHH----Hhc
Q 013459 329 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKA----INL 389 (442)
Q Consensus 329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~----l~~ 389 (442)
+..+|...++.+++-.++-+|++|+.+..+- .....+++..+...|+.+-.+++++-| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4567888899999999999999998763221 234678999999999999999988755 444
Q ss_pred CCcc
Q 013459 390 DKKN 393 (442)
Q Consensus 390 ~p~~ 393 (442)
-|..
T Consensus 84 iPQC 87 (140)
T PF10952_consen 84 IPQC 87 (140)
T ss_pred ccCC
Confidence 5543
No 415
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=77.87 E-value=14 Score=25.57 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 013459 362 YYSNRAAAYLESGSFLQAEADCTKAIN 388 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~ 388 (442)
.+..++.-+-+.|++++|+.+|+.+++
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344455555566666666666665543
No 416
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=77.73 E-value=8.6 Score=38.71 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-VKAYLRRGTARE 405 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~ 405 (442)
..|-..+..|...|+|+-|.++|.++=. ...-...|-+.|+|++|.+..++... |+. ...|...+.-+.
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedld 835 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLD 835 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHH
Confidence 3455678888899999999999887632 23335668888999999887777654 433 344555566677
Q ss_pred HcCCHHHHHHHH
Q 013459 406 MLGYYKEAIEDF 417 (442)
Q Consensus 406 ~~~~~~~A~~~~ 417 (442)
+.|+|.+|.+.|
T Consensus 836 ehgkf~eaeqly 847 (1636)
T KOG3616|consen 836 EHGKFAEAEQLY 847 (1636)
T ss_pred hhcchhhhhhee
Confidence 888887766544
No 417
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=77.26 E-value=41 Score=30.53 Aligned_cols=68 Identities=12% Similarity=0.038 Sum_probs=49.6
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--CCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGN--NATYYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
.|+..+.++..|...+..|+|..|..++-....+ +++ +..+....-....-..+|+.|++.+.++-+.
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3888999999999999999999999885554443 332 3344444434455678899999998887554
No 418
>PF13041 PPR_2: PPR repeat family
Probab=76.44 E-value=15 Score=22.70 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 362 YYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
.|..+-..+.+.|++++|.+.|++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3444445555555555555555555443
No 419
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.39 E-value=40 Score=34.35 Aligned_cols=57 Identities=11% Similarity=-0.011 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC---C------ccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013459 362 YYSNRAAAYLESGSFLQAEADCTKAINLD---K------KNVKAYLRRGTAREMLGYYKEAIEDFS 418 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p------~~~~~~~~~a~~~~~~~~~~~A~~~~~ 418 (442)
..+..+.+.+-.+++..|.+..+.+.... | ..+..+|..|..+...|+.+.|+.+|.
T Consensus 363 ~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 363 LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 34456777788899999999888776542 2 236678889999999999999999998
No 420
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=76.37 E-value=56 Score=31.27 Aligned_cols=117 Identities=9% Similarity=-0.076 Sum_probs=81.1
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
+.++|.+.-.|+++-..+-.++.+++-.+.|++...-.|-.+.+|...-.-....++|......|.+++...= +...|.
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~ldLW~ 113 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-NLDLWM 113 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-cHhHHH
Confidence 4456889999999999999999999999999999999988888887666656677899999999999987532 344443
Q ss_pred HHHHHHHHcC-----C----HHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459 399 RRGTAREMLG-----Y----YKEAIEDFSYALVLEPTNKRASLSADR 436 (442)
Q Consensus 399 ~~a~~~~~~~-----~----~~~A~~~~~~~l~~~p~~~~~~~~l~~ 436 (442)
.+-.--.+.+ + .-+|.+..-.+.-.+|.....|.....
T Consensus 114 lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~ 160 (660)
T COG5107 114 LYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGL 160 (660)
T ss_pred HHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHH
Confidence 3222111111 1 234444444455566766666655443
No 421
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=76.10 E-value=63 Score=30.47 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=15.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh
Q 013459 402 TAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
.--..+|+|++|...+-+++++
T Consensus 254 ~rr~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 254 ERRATQGRYDDAAARLYRALEL 275 (380)
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 3344788999988777666654
No 422
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=75.06 E-value=7.8 Score=41.66 Aligned_cols=100 Identities=20% Similarity=0.143 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHH------HHHHH-HhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAIS------FYTEA-IKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD------ 390 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~------~~~~a-l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------ 390 (442)
..+....+.+......+.+.+|.+ +++.. -.+.|+....|..++..+.+++++++|+....++.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 566778888989999999998888 55532 23467788899999999999999999999988875442
Q ss_pred --CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 391 --KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 391 --p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
|+....+-+++...+..++...|.+.+.++..+
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 445667888888888888888888888877764
No 423
>PRK11619 lytic murein transglycosylase; Provisional
Probab=75.02 E-value=67 Score=32.96 Aligned_cols=98 Identities=11% Similarity=-0.021 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
........+|......+...+|...++++.... .+......+.......++++.+..++...-..........|.+|.+
T Consensus 277 ~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa 355 (644)
T PRK11619 277 QRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADL 355 (644)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHH
Confidence 344445556655555544667777777655332 2334444455555688899888888877544334567788889999
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 013459 404 REMLGYYKEAIEDFSYALV 422 (442)
Q Consensus 404 ~~~~~~~~~A~~~~~~~l~ 422 (442)
+..+|+.++|...|+++..
T Consensus 356 ~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 356 LLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHcCCHHHHHHHHHHHhc
Confidence 8889999999999998744
No 424
>PF15469 Sec5: Exocyst complex component Sec5
Probab=73.69 E-value=51 Score=27.38 Aligned_cols=28 Identities=11% Similarity=-0.039 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459 408 GYYKEAIEDFSYALVLEPTNKRASLSAD 435 (442)
Q Consensus 408 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 435 (442)
...++..+++...++++++...+|..+.
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 4577788888888999998877877654
No 425
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=73.13 E-value=28 Score=27.18 Aligned_cols=61 Identities=18% Similarity=0.077 Sum_probs=37.7
Q ss_pred HHHHHHHH-HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 329 AKEKGNQA-YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 329 ~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
|..+|..+ .++|+-++--+.+....+.+..++..+..+|.+|.++|+..++-..+.+|.+.
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 44444433 34555565556666666555667888888899999999999888888888764
No 426
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=73.05 E-value=9.8 Score=25.71 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIK 354 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 354 (442)
+..+...|..+=+.|+|++|+.+|.++++
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455556666666666666666666654
No 427
>PF12854 PPR_1: PPR repeat
Probab=72.97 E-value=8.1 Score=21.79 Aligned_cols=27 Identities=11% Similarity=0.011 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTE 351 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~ 351 (442)
+...|..+-..+.+.|+.++|.++|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 455788899999999999999999986
No 428
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=72.91 E-value=35 Score=32.55 Aligned_cols=78 Identities=13% Similarity=-0.081 Sum_probs=62.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 348 FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 348 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
-+..-|+-+|.+.-.|+.+...+..++.+++-.+.|++...-.|-.+.+|-..-..-...++|+.-...|-+|+...-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 345567889999999999999999999999999999999999888888876554444455778888888888876543
No 429
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=72.88 E-value=30 Score=32.99 Aligned_cols=103 Identities=15% Similarity=0.112 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCC-----CC---HHHH--------HHHHHHH-HHhcC-----HHHHHHHHHHH
Q 013459 329 AKEKGNQAYKDKQWLKAISFYTEAIKLNG-----NN---ATYY--------SNRAAAY-LESGS-----FLQAEADCTKA 386 (442)
Q Consensus 329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~---~~~~--------~~~~~~~-~~~~~-----~~~A~~~~~~~ 386 (442)
..+.|..++..|+|.+|+..|..+|..-| +. .++. |.+|+.. ...+. .++..+.++-+
T Consensus 207 ~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELA 286 (422)
T PF06957_consen 207 RLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELA 286 (422)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 34456677788888888888888876421 11 1111 1222111 11211 12222222222
Q ss_pred -----HhcCCccHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 013459 387 -----INLDKKNVKAYLRRGT-AREMLGYYKEAIEDFSYALVLEPTNKRAS 431 (442)
Q Consensus 387 -----l~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 431 (442)
.++.|.+...-.+.|. ..++.++|..|....++.|++.|....+.
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~ 337 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAE 337 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHH
Confidence 1233433332233343 34688999999999999999999876544
No 430
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.46 E-value=9.8 Score=26.41 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 355 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 355 (442)
.+..+...|..+=+.|+|++|+.+|.++++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4455666777777778888888887777764
No 431
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=72.19 E-value=15 Score=30.87 Aligned_cols=49 Identities=16% Similarity=0.062 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 013459 342 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391 (442)
Q Consensus 342 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 391 (442)
.+..++..++.++..| ++..+.+++.++..+|+.++|....+++..+.|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3445555666676666 678888999999999999999999999999999
No 432
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=71.98 E-value=7.4 Score=36.45 Aligned_cols=58 Identities=14% Similarity=0.039 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459 329 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 386 (442)
Q Consensus 329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 386 (442)
.-.+..||++.++.+-|+.+..+.|.++|.+..-+...+.|...+.+|.+|.+-+--+
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999999999997755433
No 433
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.84 E-value=1.1e+02 Score=30.39 Aligned_cols=95 Identities=9% Similarity=-0.050 Sum_probs=60.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhhCCC-CHHHHHHHH-HHHHHhcCHHHHHHHHHHHH-----hcCCccHHHHHHHHHH
Q 013459 331 EKGNQAYKDKQWLKAISFYTEAIKLNGN-NATYYSNRA-AAYLESGSFLQAEADCTKAI-----NLDKKNVKAYLRRGTA 403 (442)
Q Consensus 331 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~-~~~~~~~~~~~A~~~~~~~l-----~~~p~~~~~~~~~a~~ 403 (442)
..-..+-+.|-+..|.+..+-.++++|. ++-+...+. ...++..+|+--|+.++..- .+-|+. ..-..+|..
T Consensus 347 r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f 425 (665)
T KOG2422|consen 347 RYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALARF 425 (665)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHHH
Confidence 3344556789999999999999999998 664444333 33344556666666665542 223432 222234444
Q ss_pred HHHcCC---HHHHHHHHHHHHhhCCC
Q 013459 404 REMLGY---YKEAIEDFSYALVLEPT 426 (442)
Q Consensus 404 ~~~~~~---~~~A~~~~~~~l~~~p~ 426 (442)
|..... .+.|...+++|+.+.|.
T Consensus 426 ~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 426 FLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 554444 67899999999999883
No 434
>PF13041 PPR_2: PPR repeat family
Probab=71.67 E-value=20 Score=22.12 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 356 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 356 (442)
...|..+-..+.+.|++++|.++|++..+..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 3467788889999999999999999998763
No 435
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=71.46 E-value=31 Score=23.97 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 355 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 355 (442)
.+..+...|..+=+.|+|++|+.+|.++|+.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445566666666777777777776666653
No 436
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=71.40 E-value=1.3 Score=43.97 Aligned_cols=103 Identities=20% Similarity=0.131 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--hhCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHH--HHhcCCcc-HHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAI--KLNGNN-ATYYSNRAAAYLESGSFLQAEADCTK--AINLDKKN-VKA 396 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~--~l~~~p~~-~~~ 396 (442)
+........-+..+++.|++..|...+++.- .+.+.. .......+.+....|++++|+..+.. ...+.+.. ...
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~ 100 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARY 100 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHH
Confidence 5666777888999999999999999998776 333332 34556678899999999999999874 22222222 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 397 YLRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
+...+.++...|+.-+|.+.+-++-.+-+
T Consensus 101 ~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~ 129 (536)
T PF04348_consen 101 HQLRAQAYEQQGDPLAAARERIALDPLLP 129 (536)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 55568899999988888776555544433
No 437
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=71.31 E-value=7.4 Score=20.80 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=8.5
Q ss_pred HHHHHHHhcCHHHHHHHHHH
Q 013459 366 RAAAYLESGSFLQAEADCTK 385 (442)
Q Consensus 366 ~~~~~~~~~~~~~A~~~~~~ 385 (442)
+-.+|.+.|++++|.+.|++
T Consensus 6 li~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHHHccchHHHHHHHHHH
Confidence 33344444444444444443
No 438
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=70.18 E-value=62 Score=26.88 Aligned_cols=97 Identities=18% Similarity=-0.006 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHhcCC
Q 013459 324 QSAEIAKEKGNQAYK-----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-------SFLQAEADCTKAINLDK 391 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-------~~~~A~~~~~~~l~~~p 391 (442)
..+...+..|..++. .++...|++.|..+-. -+.+.+...+|.++..-. +.+.|+.++.++..++
T Consensus 66 ~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~- 142 (248)
T KOG4014|consen 66 SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE- 142 (248)
T ss_pred CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC-
Confidence 345667777877764 4588899999998876 457788888888775432 3788999999998875
Q ss_pred ccHHHHHHHHHHHHHc------------------------CCHHHHHHHHHHHHhhC
Q 013459 392 KNVKAYLRRGTAREML------------------------GYYKEAIEDFSYALVLE 424 (442)
Q Consensus 392 ~~~~~~~~~a~~~~~~------------------------~~~~~A~~~~~~~l~~~ 424 (442)
+.++.++|...|..- .+++.|.+.--++-+++
T Consensus 143 -~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~ 198 (248)
T KOG4014|consen 143 -DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD 198 (248)
T ss_pred -CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC
Confidence 455666666555543 45677777766666654
No 439
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=70.06 E-value=70 Score=32.00 Aligned_cols=89 Identities=11% Similarity=0.010 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 407 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 407 (442)
++-.....+.+.+..+++....+.-+.-...........+..+...++.++|-.+|++++..+|+ +.++..++-+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (578)
T PRK15490 10 ALGKTCLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNT 87 (578)
T ss_pred HhhhHHHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhh
Confidence 33334445566777788888888776665556667777888899999999999999999999998 6788889999999
Q ss_pred CCHHHHHHHHH
Q 013459 408 GYYKEAIEDFS 418 (442)
Q Consensus 408 ~~~~~A~~~~~ 418 (442)
|-..+|...++
T Consensus 88 ~~~~~~~~~~~ 98 (578)
T PRK15490 88 GLAKDAQLILK 98 (578)
T ss_pred hhhhHHHHHHH
Confidence 98888877776
No 440
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=69.33 E-value=19 Score=35.92 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=29.5
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013459 370 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA 420 (442)
Q Consensus 370 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 420 (442)
+...++|.+|....++.-+.- ...++..|+-+.+..+|++|.+.|-++
T Consensus 783 Hve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 783 HVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred eeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 333445555544433332222 346777888888888888888887765
No 441
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.93 E-value=71 Score=34.09 Aligned_cols=62 Identities=11% Similarity=0.066 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
-+.+..|.++|...++.+...+|++.|-++ +++..|...-....+.|.|++-++++..+-+.
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 345677888888888888888888888765 56777777888888888888888888777543
No 442
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.41 E-value=33 Score=25.09 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459 396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 430 (442)
.+-.+|.+|.+.|+-+.|.+.|+.--.+.|++...
T Consensus 74 ~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 74 YHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 44445555555555555555555555555554433
No 443
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=67.71 E-value=53 Score=25.67 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=29.6
Q ss_pred HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 013459 337 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384 (442)
Q Consensus 337 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 384 (442)
...+...+.+.+++..+..++.+...+..+..+|.+. +..+.+..++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3456677777777777777666666666666666544 3344444444
No 444
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.70 E-value=1.3e+02 Score=29.54 Aligned_cols=109 Identities=13% Similarity=-0.040 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------------
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-------------- 390 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------------- 390 (442)
+-.+++.++.+|..+ .-++-..++++.++.+-++...-..++..|.+ .+-+.+...|.+++...
T Consensus 98 ~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWe 175 (711)
T COG1747 98 SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWE 175 (711)
T ss_pred hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHH
Confidence 344566666666655 44445555666666555555444455555544 45555555555444221
Q ss_pred ------CccHH-------------------HHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459 391 ------KKNVK-------------------AYLRRG-TAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD 435 (442)
Q Consensus 391 ------p~~~~-------------------~~~~~a-~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 435 (442)
+++.+ ..+..- .-|....++++|++.+...++++..+..+...+-
T Consensus 176 KL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i 246 (711)
T COG1747 176 KLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEII 246 (711)
T ss_pred HHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHH
Confidence 22211 111111 2344556788999999999988888777765543
No 445
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.70 E-value=72 Score=28.57 Aligned_cols=93 Identities=20% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhc---------------------------
Q 013459 330 KEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESG--------------------------- 374 (442)
Q Consensus 330 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~--------------------------- 374 (442)
.++|+...+.+++++|+..|.+.+.. -.+......+++.+|...|
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Q ss_pred -------------CHHHHHHHHHHHHhcCCccHHHHHH------HHHHHHHcCCHHHHHHHHHHHHh
Q 013459 375 -------------SFLQAEADCTKAINLDKKNVKAYLR------RGTAREMLGYYKEAIEDFSYALV 422 (442)
Q Consensus 375 -------------~~~~A~~~~~~~l~~~p~~~~~~~~------~a~~~~~~~~~~~A~~~~~~~l~ 422 (442)
.++.-+..+...++-....-..... +..++++.|+|.+|+....-.+.
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 446
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=67.49 E-value=1.2e+02 Score=29.31 Aligned_cols=97 Identities=19% Similarity=0.057 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcC--------------HHHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGS--------------FLQAEADCTKA 386 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~ 386 (442)
.....+|..++..++|+-|...|+.+.+-..++ ..+....+.+.+..+. ++.|...|.+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 456778888889999999998888887654433 2233444555555442 33444444442
Q ss_pred H----hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 387 I----NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 387 l----~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
- .....-..+....+.++...+.+.+|...+-+....
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1 111122446666777788888887777666555544
No 447
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.34 E-value=49 Score=27.27 Aligned_cols=78 Identities=12% Similarity=-0.010 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 406 (442)
+-..-+..+...|.|++-....+..-. .+|-...+...||..-++-|++..|.++|.+... +..-++...+.+++..+
T Consensus 134 ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 134 ARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 344556677788888887766654322 2344456777888888899999999999988776 44445555556655543
No 448
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=66.37 E-value=15 Score=20.06 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Q 013459 364 SNRAAAYLESGSFLQAEADCTKAI 387 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~A~~~~~~~l 387 (442)
..+-.+|.+.|++++|.+.|++..
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444555555555555555443
No 449
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=66.07 E-value=14 Score=25.84 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 339 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 339 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
.+.|++|.+..++++..+.. |+.++|+.+|+++++.
T Consensus 2 k~~~~~A~~~I~kaL~~dE~---------------g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 2 RGYYKQAFEEISKALRADEW---------------GDKEQALAHYRKGLRE 37 (79)
T ss_pred chHHHHHHHHHHHHhhhhhc---------------CCHHHHHHHHHHHHHH
No 450
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=65.23 E-value=39 Score=25.31 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 355 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 355 (442)
........|...+..|||++|.+...++-+.
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3444445555555555555555555555444
No 451
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.82 E-value=1.3e+02 Score=31.57 Aligned_cols=110 Identities=18% Similarity=0.047 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC--------CCHHHHHHHHHH--H------------HHhcCHHHH--HH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--------NNATYYSNRAAA--Y------------LESGSFLQA--EA 381 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~~~~~--~------------~~~~~~~~A--~~ 381 (442)
...-.+.|..+...|++.+|++.|..+|-.-| +...+-..+-.| | +...+.+++ +.
T Consensus 991 l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElA 1070 (1202)
T KOG0292|consen 991 LNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELA 1070 (1202)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHH
Confidence 44456778888999999999999999986422 111222222222 1 111234444 22
Q ss_pred HHHHHHhcCCccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459 382 DCTKAINLDKKNV-KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD 435 (442)
Q Consensus 382 ~~~~~l~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 435 (442)
.|=.-..+.|-+. -++..--.++++++++..|....++.+++.|..+.+.....
T Consensus 1071 aYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rk 1125 (1202)
T KOG0292|consen 1071 AYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARK 1125 (1202)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 2222234455443 33333344678999999999999999999998776654433
No 452
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=64.52 E-value=47 Score=25.47 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH----Hhh
Q 013459 363 YSNRAAAYLESGSFLQAEADCTKAINLDKKN---------------VKAYLRRGTAREMLGYYKEAIEDFSYA----LVL 423 (442)
Q Consensus 363 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~----l~~ 423 (442)
+..+|...++.+++-.++-+|++|+.+..+- .-...++|..+..+|+-+-.+++++-| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4567888888999999999999888653211 225678999999999999888888654 445
Q ss_pred CCCCh
Q 013459 424 EPTNK 428 (442)
Q Consensus 424 ~p~~~ 428 (442)
-|+.+
T Consensus 84 iPQCp 88 (140)
T PF10952_consen 84 IPQCP 88 (140)
T ss_pred ccCCC
Confidence 55544
No 453
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.99 E-value=22 Score=35.12 Aligned_cols=78 Identities=18% Similarity=0.029 Sum_probs=50.8
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCC
Q 013459 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY 409 (442)
Q Consensus 330 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~ 409 (442)
...+..+-.+|-+++| +++.++.. - +-.+..++|+++.|.+...+ .++..-|-.||.+....++
T Consensus 618 t~va~Fle~~g~~e~A-------L~~s~D~d-~---rFelal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQA-------LELSTDPD-Q---RFELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhHHhHhhhccchHhh-------hhcCCChh-h---hhhhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhccc
Confidence 3445555555555554 44544332 1 33455688888888665433 3456678888999999999
Q ss_pred HHHHHHHHHHHHhh
Q 013459 410 YKEAIEDFSYALVL 423 (442)
Q Consensus 410 ~~~A~~~~~~~l~~ 423 (442)
+..|.++|.++..+
T Consensus 682 l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 682 LPLASECFLRARDL 695 (794)
T ss_pred chhHHHHHHhhcch
Confidence 99999998887654
No 454
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=63.99 E-value=81 Score=28.31 Aligned_cols=105 Identities=12% Similarity=0.039 Sum_probs=56.0
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHH---HHhcC----HHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 333 GNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAY---LESGS----FLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 333 a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~---~~~~~----~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
.+.+++.++|++--+.|++..+-..+ ..+..+..+... +.+.. ..+-.+.++.-++..|++..++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 44566667777666666666543221 111111111111 11111 1123444455556667666666666655
Q ss_pred HHHcC----------------------CHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 404 REMLG----------------------YYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 404 ~~~~~----------------------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
+.+.. -.+.|..++.++++++|+...+...+-.+
T Consensus 87 ~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~ 142 (277)
T PF13226_consen 87 WVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINI 142 (277)
T ss_pred HHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 54322 14678889999999999988776655443
No 455
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=63.89 E-value=22 Score=29.42 Aligned_cols=52 Identities=6% Similarity=-0.023 Sum_probs=37.7
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 013459 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383 (442)
Q Consensus 331 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 383 (442)
+...+++++|.|++|.+.+++..+ +|++......|..+-.+...+..-++.|
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqnF 167 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQNF 167 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHhc
Confidence 445678899999999999999998 7877776666666665555555544443
No 456
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=63.86 E-value=59 Score=24.30 Aligned_cols=46 Identities=26% Similarity=0.288 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCC
Q 013459 364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY 409 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~ 409 (442)
...|...+..||++.|.+.+.++.+..+...-.+..-+++-..+||
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 3457778889999999999999987755545555555777666664
No 457
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=63.41 E-value=17 Score=25.17 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIKL 355 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~ 355 (442)
.+...|...=..|+|++|+.+|..+++.
T Consensus 8 ~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 8 FLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 3444444444555555555555555543
No 458
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=63.04 E-value=48 Score=22.94 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL 355 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 355 (442)
+..+...|...-+.++|++|..+|..+++.
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344555555555566666666666666553
No 459
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=63.01 E-value=27 Score=32.39 Aligned_cols=61 Identities=18% Similarity=0.105 Sum_probs=37.6
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC-C--------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 366 RAAAYLESGSFLQAEADCTKAINLD-K--------KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 366 ~~~~~~~~~~~~~A~~~~~~~l~~~-p--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
+-.+|+.+++++-+...++-....+ | +....+|.+|++|..+.++.+|...+++++...|+
T Consensus 183 L~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 183 LFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 4456666666666555444322211 1 12346677788887777777787777777777765
No 460
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.00 E-value=31 Score=34.19 Aligned_cols=42 Identities=14% Similarity=0.262 Sum_probs=23.4
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHh-hccCCCEEEeeCC
Q 013459 188 AEIGEMLEISETVIENCKSIRNEMRSAISS-LLKDDGILVTPTT 230 (442)
Q Consensus 188 ~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~-~~~~~d~li~Pt~ 230 (442)
...+.+...+.+-..+|.....+..+.+.. .|-. |.+|.-|+
T Consensus 496 ~a~e~g~~v~eeGiedAfevLgE~sE~v~tg~Wvg-D~fiytts 538 (794)
T KOG0276|consen 496 NAVEQGIEVTEEGIEDAFEVLGEVSESVKTGKWVG-DCFIYTTS 538 (794)
T ss_pred HHHhcCCCCcchhHHHHHHHHhhhhhheeeceeee-eEEEEeec
Confidence 334455566666677776666555544433 3443 66665554
No 461
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=62.74 E-value=1.4e+02 Score=31.44 Aligned_cols=85 Identities=18% Similarity=0.040 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CccHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLD----KKNVK 395 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----p~~~~ 395 (442)
.++..--.|.+....++.++|+++.+.++..-|.+ ..++...|.+..-.|++.+|.....++.+.. -....
T Consensus 457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~ 536 (894)
T COG2909 457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLA 536 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHH
Confidence 34444456888899999999999999999887664 3567778999999999999999998887763 22233
Q ss_pred HH--HHHHHHHHHcCC
Q 013459 396 AY--LRRGTAREMLGY 409 (442)
Q Consensus 396 ~~--~~~a~~~~~~~~ 409 (442)
.| +..+.++..+|+
T Consensus 537 ~~~~~~~s~il~~qGq 552 (894)
T COG2909 537 LWSLLQQSEILEAQGQ 552 (894)
T ss_pred HHHHHHHHHHHHHhhH
Confidence 33 345777888884
No 462
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=62.24 E-value=17 Score=31.81 Aligned_cols=90 Identities=22% Similarity=0.108 Sum_probs=57.9
Q ss_pred hcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH----------HhcCHHHHHHHHHHHHhcCCcc------HHHHHHHH
Q 013459 338 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL----------ESGSFLQAEADCTKAINLDKKN------VKAYLRRG 401 (442)
Q Consensus 338 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----------~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a 401 (442)
..++.-.|+..|...+.-.|.+..+...-+.|.. ..-..+.|.+++.+|+-+.... .-..+.++
T Consensus 7 D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~ 86 (368)
T COG5091 7 DEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYF 86 (368)
T ss_pred cccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhhhH
Confidence 3344445666666666666665332222222221 2234678888898888664322 23567788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTN 427 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~ 427 (442)
..|+...+|+.|..+|.+|+.+.-++
T Consensus 87 v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 87 VHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999885544
No 463
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.80 E-value=92 Score=32.37 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 355 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 355 (442)
......+...|..++..|+|++|...|-+.|..
T Consensus 365 d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 365 DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 345667888999999999999999999999865
No 464
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.79 E-value=50 Score=32.29 Aligned_cols=84 Identities=11% Similarity=-0.058 Sum_probs=50.8
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 399 (442)
.|..+-.++..+..+...|+.+.|+..++..++..-. ..-.++.++.++..+.+|.+|...+..+...+.-..-.|-.
T Consensus 263 ~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Y 342 (546)
T KOG3783|consen 263 YPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTY 342 (546)
T ss_pred CCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHH
Confidence 3555566666777777777766667777766651100 13456677777777778888877777777665433333322
Q ss_pred H-HHHHH
Q 013459 400 R-GTARE 405 (442)
Q Consensus 400 ~-a~~~~ 405 (442)
+ |-|+.
T Consensus 343 fa~cc~l 349 (546)
T KOG3783|consen 343 FAGCCLL 349 (546)
T ss_pred HHHHHHh
Confidence 3 34443
No 465
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=61.27 E-value=22 Score=34.04 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ 378 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 378 (442)
++...++|...+.+|+|.-+.+++++++--+|++..+....+.++.++|--.|
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE 504 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAE 504 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhc
Confidence 34456788888888888888888888888888888888888888888875433
No 466
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=60.99 E-value=22 Score=24.55 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIK 354 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 354 (442)
+..+...|...=..|+|++|+.+|.++++
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444555555556666666666555554
No 467
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=60.56 E-value=25 Score=19.14 Aligned_cols=23 Identities=13% Similarity=-0.087 Sum_probs=10.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHH
Q 013459 364 SNRAAAYLESGSFLQAEADCTKA 386 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~A~~~~~~~ 386 (442)
..+-.++.+.|+++.|...|+..
T Consensus 5 ~~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 5 NALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 33344444444444444444443
No 468
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=60.49 E-value=1.4e+02 Score=27.44 Aligned_cols=110 Identities=16% Similarity=0.083 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRGTAR 404 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~ 404 (442)
.-..+|.+..+.|+..||++.+....+-.|-. .....++-..+..+.-|......+.+--.+. |......|.-+..-
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK 356 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLK 356 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHH
Confidence 34568999999999999999999988877732 2344556666666655554444433332222 44444444333221
Q ss_pred HH--cCC--------------HHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 405 EM--LGY--------------YKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 405 ~~--~~~--------------~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
.+ ..+ -..|++.+-++++.+|.-+.....++.+
T Consensus 357 ~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ksl 405 (556)
T KOG3807|consen 357 TRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKSL 405 (556)
T ss_pred HHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHHhc
Confidence 11 001 1347788899999999888776665543
No 469
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.16 E-value=32 Score=30.36 Aligned_cols=52 Identities=12% Similarity=0.222 Sum_probs=42.6
Q ss_pred HhcccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 013459 337 YKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAIN 388 (442)
Q Consensus 337 ~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 388 (442)
++..+.++|+..|++.+++.++- ..++.....+++++++|++.+..|.+.+-
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34458899999999999998764 35677778889999999999999988875
No 470
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.83 E-value=21 Score=24.68 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 342 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 342 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
.++|+.++.+++..+ ..|+|++|+..|..+++.
T Consensus 3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence 456777777775543 457778888888777765
No 471
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=59.28 E-value=1e+02 Score=30.15 Aligned_cols=73 Identities=18% Similarity=0.059 Sum_probs=55.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 348 FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 348 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
+.++.+. ..++..+++.++.||.+. ..++-...++|..+.+-++...-..++..|.+ .+-+.+..+|.+++..
T Consensus 88 ~c~~~l~-~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 88 LCTRVLE-YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHH-hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 3444444 456778899999999888 66777888899999888877777778877766 7778888888887754
No 472
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=58.65 E-value=1.4e+02 Score=26.90 Aligned_cols=104 Identities=10% Similarity=-0.019 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--- 393 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--- 393 (442)
....+++.++|..|.+.++.+.+.+.+.+.++..-. -.-....+|..|-.+.-.++.++.....++..-+-
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 567789999999999999999999888777764321 12233456777766666677777777776654321
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 394 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
-..--..|.-.....+|.+|...+..++.....
T Consensus 192 NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 192 NRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 112233577777788899999888887765543
No 473
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=58.27 E-value=56 Score=31.23 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC--H------------------HHHHHHHHHH-HHhcCHHHHHHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--A------------------TYYSNRAAAY-LESGSFLQAEADCT 384 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~------------------~~~~~~~~~~-~~~~~~~~A~~~~~ 384 (442)
....+..|...+..+++.+++..++++|+..-.. . ......+-++ ..-|.+-+-..+.+
T Consensus 31 ~~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl~ 110 (471)
T KOG4459|consen 31 HELAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACLR 110 (471)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999998752110 0 0000001000 11122222233333
Q ss_pred HHHhc---CCcc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 385 KAINL---DKKN----------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 385 ~~l~~---~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
++..- .+.. ...+..+-.+|++.|+..+|++.-...+--+|++..++.++...+.
T Consensus 111 rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~ 178 (471)
T KOG4459|consen 111 RCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQT 178 (471)
T ss_pred HHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHh
Confidence 33221 1111 2466678889999999999999999999999999999988877653
No 474
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=56.76 E-value=28 Score=24.04 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=10.0
Q ss_pred HHHHHHHhcccHHHHHHHHHHHH
Q 013459 331 EKGNQAYKDKQWLKAISFYTEAI 353 (442)
Q Consensus 331 ~~a~~~~~~~~~~~A~~~~~~al 353 (442)
..|..+=..|+|++|+.+|.+++
T Consensus 13 ~~Av~~d~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 13 SKALKADEAGDYEEALELYKKAI 35 (77)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444443
No 475
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.70 E-value=2.2e+02 Score=28.48 Aligned_cols=117 Identities=9% Similarity=-0.014 Sum_probs=77.6
Q ss_pred HHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh---------------------CCCCHH
Q 013459 303 LQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---------------------NGNNAT 361 (442)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~ 361 (442)
+.-.................|-....+.+++.....+|+.+-|..+.+++|=. .|.|..
T Consensus 261 F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~ 340 (665)
T KOG2422|consen 261 FYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQ 340 (665)
T ss_pred HHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHH
Confidence 33444444555555566677999999999999999999999988888877631 233322
Q ss_pred H---HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHH-HHcCCHHHHHHHHHH
Q 013459 362 Y---YSNRAAAYLESGSFLQAEADCTKAINLDKK-NVKAYLRRGTAR-EMLGYYKEAIEDFSY 419 (442)
Q Consensus 362 ~---~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~-~~~~~~~~A~~~~~~ 419 (442)
. .+..-....+.|=+..|.++++-.++++|. ++-+...+-..| ....+|+=-++.++.
T Consensus 341 FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 341 FYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2 223334456678899999999999999998 665444443333 355555544444333
No 476
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=56.57 E-value=31 Score=19.60 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHh
Q 013459 410 YKEAIEDFSYALV 422 (442)
Q Consensus 410 ~~~A~~~~~~~l~ 422 (442)
+++|.++|+++.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4555555555543
No 477
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=56.14 E-value=92 Score=29.33 Aligned_cols=85 Identities=18% Similarity=0.028 Sum_probs=58.0
Q ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHcCCHHHHH-HH
Q 013459 339 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRGTAREMLGYYKEAI-ED 416 (442)
Q Consensus 339 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~-~~ 416 (442)
....-+|+.+++.++..+|.+......+..+|..+|-...|...|..+--.+ ..+.-.+ .+..-+...+.+..+. ..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h-~~~~r~~~~~~~~~~~~~~ 274 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGH-LILDRLSTLGPFKSAPENL 274 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHH-HHHHHHhccCcccccchHH
Confidence 4466788899999999999999999999999999999999999987542111 1111122 2222234466666666 77
Q ss_pred HHHHHhhC
Q 013459 417 FSYALVLE 424 (442)
Q Consensus 417 ~~~~l~~~ 424 (442)
++.++...
T Consensus 275 ~~~~~~fy 282 (365)
T PF09797_consen 275 LENALKFY 282 (365)
T ss_pred HHHHHHHH
Confidence 77766654
No 478
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.79 E-value=52 Score=29.29 Aligned_cols=115 Identities=14% Similarity=0.120 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHH--HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH------HHhcCHHHHHHHHHHHHhcCCccH
Q 013459 323 KQSAEIAKEKGNQA--YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY------LESGSFLQAEADCTKAINLDKKNV 394 (442)
Q Consensus 323 ~~~~~~~~~~a~~~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~------~~~~~~~~A~~~~~~~l~~~p~~~ 394 (442)
|..-+.|..+-.++ +...+|..-....++.++.++.|...|..+-.+. .....+++..++-..++..++.|.
T Consensus 105 PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~ 184 (328)
T COG5536 105 PKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNN 184 (328)
T ss_pred CchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCCh
Confidence 55555555554444 3336688888888999999999887776655544 334456666777777888899999
Q ss_pred HHHHHHHH---HHHHcCC------HHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 395 KAYLRRGT---AREMLGY------YKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 395 ~~~~~~a~---~~~~~~~------~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
.+|...-. ...+.|+ +++-+++.-.++..+|++...|..+.-+
T Consensus 185 SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 185 SAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 88877633 2333443 4566677777888899999888776654
No 479
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=55.58 E-value=27 Score=19.38 Aligned_cols=12 Identities=25% Similarity=0.091 Sum_probs=5.0
Q ss_pred CHHHHHHHHHHH
Q 013459 375 SFLQAEADCTKA 386 (442)
Q Consensus 375 ~~~~A~~~~~~~ 386 (442)
+.++|+.+|+++
T Consensus 20 d~~~A~~~~~~A 31 (36)
T smart00671 20 DLEKALEYYKKA 31 (36)
T ss_pred CHHHHHHHHHHH
Confidence 344444444443
No 480
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.85 E-value=1.6e+02 Score=26.27 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=24.4
Q ss_pred hhCCCCHHHHHHHH-HHHHHhcCHHHHHHHHHHHHhc
Q 013459 354 KLNGNNATYYSNRA-AAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 354 ~~~p~~~~~~~~~~-~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
+-.|...+.+..++ ..|..+++.+.|...+..-++.
T Consensus 134 ~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 134 KGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred hcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34667777777777 4566779999998877666554
No 481
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=54.52 E-value=20 Score=24.85 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 013459 343 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 388 (442)
Q Consensus 343 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 388 (442)
.+|+.++.++++.+. .|+|++|..+|..++.
T Consensus 4 ~~A~~l~~~Ave~d~---------------~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 4 EQAAELIRLALEKEE---------------EGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HhhHHHHHHHHHHHHH
Confidence 567777777766542 2555555555555543
No 482
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=54.30 E-value=34 Score=23.65 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIK 354 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~ 354 (442)
..+...|...=..|+|++|+.+|..+++
T Consensus 7 i~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 7 IALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444445555555555555555544
No 483
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=53.97 E-value=53 Score=33.27 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=11.3
Q ss_pred HHHHHHhcccHHHHHHHHHH
Q 013459 332 KGNQAYKDKQWLKAISFYTE 351 (442)
Q Consensus 332 ~a~~~~~~~~~~~A~~~~~~ 351 (442)
+|...---|+|+||.+.|-.
T Consensus 740 ~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 740 RAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred hHhHhhhhcchhHhhhhhhc
Confidence 34444445677777766643
No 484
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.83 E-value=1.3e+02 Score=25.08 Aligned_cols=111 Identities=10% Similarity=-0.004 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcccHHHHHHH--HHHHHhhCCCCHHHHH----HHHHHHHHh--cC--------------HHHHHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISF--YTEAIKLNGNNATYYS----NRAAAYLES--GS--------------FLQAEADC 383 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~--~~~al~~~p~~~~~~~----~~~~~~~~~--~~--------------~~~A~~~~ 383 (442)
.+.|+.-+..+++.|++++=.+. .-+++-..|....+.. .+.+++.+. |+ .+.|+..+
T Consensus 13 ~dfyf~~~c~aFR~~r~~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~ 92 (200)
T cd00280 13 LDFYFHSACRAFREGRYEDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMVL 92 (200)
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHHH
Confidence 45677788888888877664333 2223333343322222 233333332 21 56777777
Q ss_pred HHHHhcCCcc---HH----HHH-HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 384 TKAINLDKKN---VK----AYL-RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 384 ~~~l~~~p~~---~~----~~~-~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
+..-+-.+.. .+ ... ..-.++.+.|+|++|.+.+++... +|++......|..+
T Consensus 93 ~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 93 ESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 7665544321 11 111 123467899999999999999998 88887776555554
No 485
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=52.98 E-value=2e+02 Score=27.03 Aligned_cols=96 Identities=9% Similarity=-0.122 Sum_probs=48.6
Q ss_pred ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcCHHHHH-HHHHHHHhcCCccH
Q 013459 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--GNNATYYSNRAAAYLESGSFLQAE-ADCTKAINLDKKNV 394 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~l~~~p~~~ 394 (442)
.....|.+.+....+.+.|...|-.+.|...|+.. ++. ..+.-.+.. ..-....+.+..+. ..++.+++....+.
T Consensus 209 ~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L-~iK~IQ~DTL~h~~-~~r~~~~~~~~~~~~~~~~~~~~fy~~~~ 286 (365)
T PF09797_consen 209 ALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL-DIKNIQLDTLGHLI-LDRLSTLGPFKSAPENLLENALKFYDNSE 286 (365)
T ss_pred HHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc-ChHHHHHHHhHHHH-HHHHhccCcccccchHHHHHHHHHHHHHH
Confidence 35566777777777788888888888888877643 111 001111111 11122345555555 66666655543322
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHH
Q 013459 395 -KAYLRRGTAREMLGYYKEAIED 416 (442)
Q Consensus 395 -~~~~~~a~~~~~~~~~~~A~~~ 416 (442)
+.--.+. ..++.|.|.+-...
T Consensus 287 ~~~~e~i~-~af~~gsysKi~ef 308 (365)
T PF09797_consen 287 KETPEFII-KAFENGSYSKIEEF 308 (365)
T ss_pred HHHHHHHH-HHHhCCCchhHHHH
Confidence 2222222 23356666555444
No 486
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=52.89 E-value=31 Score=23.19 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=6.1
Q ss_pred HHcCCHHHHHHHHHH
Q 013459 405 EMLGYYKEAIEDFSY 419 (442)
Q Consensus 405 ~~~~~~~~A~~~~~~ 419 (442)
.+.|++++|+.+|.+
T Consensus 16 D~~g~~~~A~~~Y~~ 30 (69)
T PF04212_consen 16 DEAGNYEEALELYKE 30 (69)
T ss_dssp HHTTSHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH
Confidence 334444444443333
No 487
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=52.76 E-value=23 Score=33.14 Aligned_cols=46 Identities=24% Similarity=0.161 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhh
Q 013459 376 FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY------------YKEAIEDFSYALVL 423 (442)
Q Consensus 376 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~~l~~ 423 (442)
...|+++++++.. .+.++.|..+|.++..+|+ |.+|.+.+.+|-..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 6788888888876 5668899999999888886 56677777776544
No 488
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=52.74 E-value=36 Score=23.37 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh
Q 013459 329 AKEKGNQAYKDKQWLKAISFYTEAIK 354 (442)
Q Consensus 329 ~~~~a~~~~~~~~~~~A~~~~~~al~ 354 (442)
+...|...=+.|+|++|+.+|..+++
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444455555555555555544
No 489
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=52.71 E-value=77 Score=24.61 Aligned_cols=47 Identities=9% Similarity=-0.030 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY 370 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 370 (442)
+..+.++.+-..++..-+.+.|..+|++.++.+|++..++..+....
T Consensus 74 eY~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 74 EYSEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 34455666666666666778888888888888888887776655554
No 490
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=52.21 E-value=98 Score=23.18 Aligned_cols=54 Identities=11% Similarity=-0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 386 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 386 (442)
+..-+...++++|+|++| -.+......++.--.++.|-.+.|--+++...+.+.
T Consensus 42 v~lIr~~sLmNrG~Yq~A-----Ll~~~~~~~pdL~p~~AL~a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 42 VALIRLSSLMNRGDYQEA-----LLLPQCHCYPDLEPWAALCAWKLGLASALESRLTRL 95 (116)
T ss_dssp HHHHHHHHHHHTT-HHHH-----HHHHTTS--GGGHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHH-----HHhcccCCCccHHHHHHHHHHhhccHHHHHHHHHHH
No 491
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=51.58 E-value=2.2e+02 Score=27.07 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=59.1
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHH------HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY------YSNRAAAYLESGSFLQAEADCTKAINLDKK 392 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 392 (442)
...+.+.+..++.+|....-+.+|..|.+++-+|+...|++... ......+..-+|++.+-.-..+..++ .
T Consensus 240 ~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~---k 316 (493)
T KOG2581|consen 240 AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMR---K 316 (493)
T ss_pred ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHH---H
Confidence 33444778888899999999999999999999999999974321 11111222334444432222221111 1
Q ss_pred cHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhCCC
Q 013459 393 NVKAYLRRGTA--REMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 393 ~~~~~~~~a~~--~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
....||.+..+ .-.+.+|.+-+..|..-+..+..
T Consensus 317 sL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~t 352 (493)
T KOG2581|consen 317 SLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGT 352 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCc
Confidence 23355555443 23444455555555555555543
No 492
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=51.31 E-value=34 Score=26.24 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=23.7
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhhCCCCH
Q 013459 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNA 360 (442)
Q Consensus 331 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 360 (442)
.+|..+...|++++|..+|.+|+...|+-.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 578888888899999998888888877543
No 493
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=51.05 E-value=1.2e+02 Score=27.35 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc----------------------CHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESG----------------------SFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 344 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----------------------~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
+-.+.++..++..|++..++..+|.++.+.. -.+.|..++.+++.++|....+...+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 4567788888899999888888888876654 356788889999999998877776666
Q ss_pred HHHHHcCC
Q 013459 402 TAREMLGY 409 (442)
Q Consensus 402 ~~~~~~~~ 409 (442)
.+-...|+
T Consensus 141 ~~s~~fge 148 (277)
T PF13226_consen 141 NISAYFGE 148 (277)
T ss_pred HHHhhcCC
Confidence 55555554
No 494
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.13 E-value=34 Score=23.72 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHh
Q 013459 365 NRAAAYLESGSFLQAEADCTKAIN 388 (442)
Q Consensus 365 ~~~~~~~~~~~~~~A~~~~~~~l~ 388 (442)
..|.-.-+.|+|++|+.+|..+++
T Consensus 11 ~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 11 RLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 334444445555555555555443
No 495
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=50.06 E-value=71 Score=21.94 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=9.6
Q ss_pred cHHHHHHHHHHHHhhC
Q 013459 341 QWLKAISFYTEAIKLN 356 (442)
Q Consensus 341 ~~~~A~~~~~~al~~~ 356 (442)
.+++|+.+..++++.+
T Consensus 4 ~~~~A~~li~~Av~~d 19 (77)
T smart00745 4 YLSKAKELISKALKAD 19 (77)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556666666665543
No 496
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=50.01 E-value=48 Score=25.45 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 013459 364 SNRAAAYLESGSFLQAEADCTKAINLDKK 392 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 392 (442)
..+|..+...|++++|..+|-+|+...|.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 34566666666666666666666666654
No 497
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=49.69 E-value=1.6e+02 Score=30.39 Aligned_cols=20 Identities=20% Similarity=0.064 Sum_probs=11.3
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 013459 400 RGTAREMLGYYKEAIEDFSY 419 (442)
Q Consensus 400 ~a~~~~~~~~~~~A~~~~~~ 419 (442)
.+..|...|+|+.|.+.|.+
T Consensus 771 iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HHHHhccchhHHHHHHHHHh
Confidence 45556666666666555443
No 498
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=48.93 E-value=1.7e+02 Score=36.04 Aligned_cols=79 Identities=16% Similarity=0.144 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHhhCCCChHHH
Q 013459 360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML----GY----YKEAIEDFSYALVLEPTNKRAS 431 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~----~~----~~~A~~~~~~~l~~~p~~~~~~ 431 (442)
++.+...|..+.++|++++|-+.|..|++++....++|..-|.-..+. .+ -..|+.+|-+|..... +..+.
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~-~skaR 2890 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYN-SSKAR 2890 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhcccc-chhhH
Confidence 466777899999999999999999999999988889998888755432 12 2346666666665543 33455
Q ss_pred HHHHHHHh
Q 013459 432 LSADRLRK 439 (442)
Q Consensus 432 ~~l~~~~~ 439 (442)
..++++..
T Consensus 2891 k~iakvLw 2898 (3550)
T KOG0889|consen 2891 KLIAKVLW 2898 (3550)
T ss_pred HHHHHHHH
Confidence 55555543
No 499
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.20 E-value=1.3e+02 Score=23.30 Aligned_cols=82 Identities=12% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhc
Q 013459 297 QNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESG 374 (442)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~ 374 (442)
..+...++.-........ .-.+++.-...|...+.... ++.+.|+..... .-..+..|...|..+...|
T Consensus 43 ~~L~~lLer~~~~f~~~~---~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~ 113 (126)
T PF08311_consen 43 SGLLELLERCIRKFKDDE---RYKNDERYLKIWIKYADLSS------DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG 113 (126)
T ss_dssp HHHHHHHHHHHHHHTTSG---GGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhhhH---hhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC
Q ss_pred CHHHHHHHHHHHH
Q 013459 375 SFLQAEADCTKAI 387 (442)
Q Consensus 375 ~~~~A~~~~~~~l 387 (442)
++++|.+.|++++
T Consensus 114 ~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 114 NFKKADEIYQLGI 126 (126)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC
No 500
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=47.50 E-value=94 Score=21.60 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhC
Q 013459 343 LKAISFYTEAIKLN 356 (442)
Q Consensus 343 ~~A~~~~~~al~~~ 356 (442)
..|+.++.+|++.+
T Consensus 4 ~~a~~l~~~Ave~D 17 (77)
T cd02683 4 LAAKEVLKRAVELD 17 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665543
Done!