Query 013459
Match_columns 442
No_of_seqs 344 out of 2885
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 10:58:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o9p_A Malonamidase E2; malona 100.0 2.5E-57 8.7E-62 425.4 25.0 280 1-304 127-411 (414)
2 2dc0_A Probable amidase; struc 100.0 2.1E-57 7.3E-62 429.0 23.8 282 1-302 143-432 (434)
3 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 6.3E-56 2.2E-60 421.7 23.0 281 1-302 137-457 (471)
4 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 1.5E-55 5.1E-60 422.8 24.3 283 1-302 150-475 (485)
5 3a1k_A Amidase; AS family enzy 100.0 1.4E-55 4.7E-60 424.5 22.8 284 1-301 167-499 (521)
6 3a2q_A 6-aminohexanoate-cyclic 100.0 5.2E-55 1.8E-59 420.4 25.4 288 1-302 146-473 (493)
7 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 4.8E-55 1.6E-59 417.0 24.3 284 1-303 143-469 (478)
8 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 2.5E-55 8.4E-60 420.8 21.6 282 1-302 138-460 (476)
9 1m22_A Peptide amidase, PAM; e 100.0 5.3E-54 1.8E-58 413.9 21.6 276 1-303 161-484 (503)
10 3ppm_A Fatty-acid amide hydrol 100.0 2.7E-51 9.2E-56 395.6 20.3 282 1-305 207-568 (573)
11 4gco_A Protein STI-1; structur 99.9 5.9E-21 2E-25 149.8 16.6 117 322-438 9-125 (126)
12 3gyz_A Chaperone protein IPGC; 99.8 2.2E-18 7.7E-23 139.1 18.5 120 318-438 28-147 (151)
13 3upv_A Heat shock protein STI1 99.8 4.2E-18 1.4E-22 133.6 15.8 120 323-442 1-126 (126)
14 4ga2_A E3 SUMO-protein ligase 99.8 5.2E-18 1.8E-22 137.5 14.0 119 321-439 26-145 (150)
15 2vgx_A Chaperone SYCD; alterna 99.8 1.7E-17 5.9E-22 134.0 16.4 120 321-440 16-135 (148)
16 2hr2_A Hypothetical protein; a 99.8 3.5E-18 1.2E-22 136.2 11.3 117 324-440 9-148 (159)
17 2xcb_A PCRH, regulatory protei 99.8 2.7E-17 9.1E-22 132.0 15.7 122 319-440 11-132 (142)
18 4gcn_A Protein STI-1; structur 99.7 4.2E-17 1.4E-21 128.0 15.5 115 323-438 5-126 (127)
19 3sz7_A HSC70 cochaperone (SGT) 99.7 6E-17 2.1E-21 133.3 15.9 119 320-438 5-125 (164)
20 3rkv_A Putative peptidylprolyl 99.7 6.9E-17 2.4E-21 132.7 14.6 119 323-441 8-145 (162)
21 4gyw_A UDP-N-acetylglucosamine 99.7 2.7E-16 9.3E-21 158.5 16.5 119 322-440 39-157 (723)
22 4gyw_A UDP-N-acetylglucosamine 99.7 6.1E-16 2.1E-20 155.9 17.4 120 321-440 4-123 (723)
23 3q49_B STIP1 homology and U bo 99.7 8E-16 2.7E-20 122.2 14.3 118 323-440 6-128 (137)
24 1hxi_A PEX5, peroxisome target 99.7 5.3E-16 1.8E-20 120.5 12.4 103 327-429 18-120 (121)
25 1elw_A TPR1-domain of HOP; HOP 99.7 4.2E-15 1.4E-19 114.3 16.9 115 325-439 3-117 (118)
26 2pl2_A Hypothetical conserved 99.7 1.7E-15 5.9E-20 130.7 14.7 120 319-439 32-162 (217)
27 2vyi_A SGTA protein; chaperone 99.7 9.6E-15 3.3E-19 114.4 17.7 121 320-440 6-126 (131)
28 3urz_A Uncharacterized protein 99.7 2E-15 6.7E-20 129.5 14.7 114 325-438 3-132 (208)
29 2lni_A Stress-induced-phosphop 99.7 2.6E-15 8.9E-20 118.3 14.3 122 319-440 9-130 (133)
30 2pl2_A Hypothetical conserved 99.6 3.8E-15 1.3E-19 128.5 16.3 116 322-438 69-195 (217)
31 2dba_A Smooth muscle cell asso 99.6 4.3E-15 1.5E-19 119.4 15.5 119 321-439 23-144 (148)
32 1p5q_A FKBP52, FK506-binding p 99.6 3.9E-15 1.3E-19 137.4 17.2 119 322-440 143-276 (336)
33 2fbn_A 70 kDa peptidylprolyl i 99.6 6.1E-15 2.1E-19 125.3 17.0 120 321-440 33-168 (198)
34 2h6f_A Protein farnesyltransfe 99.6 6.3E-16 2.2E-20 144.6 11.7 121 320-440 125-246 (382)
35 2xev_A YBGF; tetratricopeptide 99.6 5.7E-15 1.9E-19 115.9 15.0 114 327-440 3-122 (129)
36 4ga2_A E3 SUMO-protein ligase 99.6 5.4E-16 1.8E-20 125.5 9.2 109 331-439 2-110 (150)
37 1zu2_A Mitochondrial import re 99.6 2E-15 6.7E-20 120.0 11.2 103 337-439 13-136 (158)
38 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 6.7E-15 2.3E-19 141.7 15.9 120 321-440 263-397 (457)
39 2h6f_A Protein farnesyltransfe 99.6 7E-15 2.4E-19 137.5 15.0 122 319-440 90-212 (382)
40 3vtx_A MAMA; tetratricopeptide 99.6 3.7E-14 1.3E-18 118.8 18.0 116 323-438 36-151 (184)
41 1elr_A TPR2A-domain of HOP; HO 99.6 2.8E-14 9.5E-19 111.8 15.8 116 324-440 2-124 (131)
42 1a17_A Serine/threonine protei 99.6 4.7E-14 1.6E-18 115.7 17.5 115 323-437 10-124 (166)
43 1na0_A Designed protein CTPR3; 99.6 6.6E-14 2.2E-18 108.6 17.0 116 325-440 8-123 (125)
44 3vtx_A MAMA; tetratricopeptide 99.6 5.1E-14 1.8E-18 117.9 16.8 116 324-439 3-118 (184)
45 3urz_A Uncharacterized protein 99.6 3.7E-14 1.3E-18 121.4 16.1 116 322-438 34-200 (208)
46 1ihg_A Cyclophilin 40; ppiase 99.6 2E-14 6.8E-19 134.2 15.0 119 322-440 219-353 (370)
47 4i17_A Hypothetical protein; T 99.6 3.5E-14 1.2E-18 123.4 15.1 120 322-441 72-227 (228)
48 4i17_A Hypothetical protein; T 99.6 3.7E-14 1.3E-18 123.2 14.7 115 324-438 40-163 (228)
49 2e2e_A Formate-dependent nitri 99.6 4.9E-14 1.7E-18 117.3 14.2 117 323-439 41-160 (177)
50 2kck_A TPR repeat; tetratricop 99.6 1.5E-14 5E-19 110.1 9.7 106 323-428 3-111 (112)
51 3k9i_A BH0479 protein; putativ 99.6 8.8E-15 3E-19 112.9 8.1 101 338-438 2-105 (117)
52 2c2l_A CHIP, carboxy terminus 99.5 6E-14 2E-18 126.1 13.9 104 324-427 2-105 (281)
53 2if4_A ATFKBP42; FKBP-like, al 99.5 1.3E-14 4.3E-19 134.1 8.3 120 320-439 173-309 (338)
54 3gyz_A Chaperone protein IPGC; 99.5 1.6E-14 5.4E-19 116.4 7.3 100 341-440 17-116 (151)
55 3as5_A MAMA; tetratricopeptide 99.5 1.4E-12 4.9E-17 108.5 18.7 118 322-439 38-155 (186)
56 4abn_A Tetratricopeptide repea 99.5 4.3E-13 1.5E-17 129.8 17.1 115 326-440 170-304 (474)
57 1wao_1 Serine/threonine protei 99.5 4.9E-14 1.7E-18 136.2 10.3 116 323-438 3-118 (477)
58 3uq3_A Heat shock protein STI1 99.5 1.4E-12 4.7E-17 115.0 18.5 116 322-437 135-256 (258)
59 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.2E-12 4.2E-17 116.7 17.3 114 321-434 38-151 (275)
60 2vsy_A XCC0866; transferase, g 99.5 7.5E-13 2.6E-17 131.4 16.6 118 322-439 19-136 (568)
61 2pzi_A Probable serine/threoni 99.5 8.4E-14 2.9E-18 140.8 9.8 115 322-437 463-577 (681)
62 2fo7_A Synthetic consensus TPR 99.5 2.8E-12 9.4E-17 100.6 16.2 104 323-426 32-135 (136)
63 2pzi_A Probable serine/threoni 99.5 2.2E-13 7.6E-18 137.7 11.6 120 320-440 427-546 (681)
64 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1.6E-12 5.6E-17 111.3 15.4 105 325-429 36-156 (213)
65 3qky_A Outer membrane assembly 99.4 2.1E-12 7.1E-17 114.6 15.8 116 323-438 49-195 (261)
66 3qou_A Protein YBBN; thioredox 99.4 1.5E-12 5E-17 117.4 14.9 117 324-440 115-267 (287)
67 4abn_A Tetratricopeptide repea 99.4 2E-12 7E-17 125.0 16.6 117 322-439 98-224 (474)
68 2q7f_A YRRB protein; TPR, prot 99.4 4E-12 1.4E-16 111.0 16.9 116 323-438 88-203 (243)
69 3qky_A Outer membrane assembly 99.4 2.3E-12 7.9E-17 114.3 15.4 117 322-438 85-239 (261)
70 1w3b_A UDP-N-acetylglucosamine 99.4 1.8E-12 6.1E-17 122.1 15.3 119 322-440 267-385 (388)
71 4gco_A Protein STI-1; structur 99.4 8E-13 2.7E-17 103.2 10.6 90 351-440 4-93 (126)
72 2q7f_A YRRB protein; TPR, prot 99.4 5.3E-12 1.8E-16 110.2 17.0 117 322-438 53-169 (243)
73 3as5_A MAMA; tetratricopeptide 99.4 4.3E-12 1.5E-16 105.6 14.6 117 323-439 5-121 (186)
74 3uq3_A Heat shock protein STI1 99.4 4.5E-12 1.5E-16 111.6 15.5 115 325-439 78-218 (258)
75 1hh8_A P67PHOX, NCF-2, neutrop 99.4 5.2E-12 1.8E-16 108.2 15.2 112 324-438 4-131 (213)
76 1w3b_A UDP-N-acetylglucosamine 99.4 3.4E-12 1.2E-16 120.1 15.2 115 323-437 64-178 (388)
77 2yhc_A BAMD, UPF0169 lipoprote 99.4 5.7E-12 2E-16 109.2 15.5 116 323-438 38-194 (225)
78 2vq2_A PILW, putative fimbrial 99.4 7.3E-12 2.5E-16 107.8 16.1 119 321-439 37-158 (225)
79 2l6j_A TPR repeat-containing p 99.4 1.9E-13 6.4E-18 104.0 5.3 95 325-419 3-103 (111)
80 2vq2_A PILW, putative fimbrial 99.4 7.2E-12 2.5E-16 107.9 16.0 118 322-439 72-193 (225)
81 2yhc_A BAMD, UPF0169 lipoprote 99.4 3.1E-12 1.1E-16 110.8 13.7 111 325-435 3-137 (225)
82 4eqf_A PEX5-related protein; a 99.4 2.3E-12 7.7E-17 120.3 13.6 115 325-439 212-338 (365)
83 3mkr_A Coatomer subunit epsilo 99.4 9.8E-12 3.4E-16 112.1 17.3 103 334-436 174-277 (291)
84 1fch_A Peroxisomal targeting s 99.4 4.4E-12 1.5E-16 118.2 15.4 116 325-440 216-342 (368)
85 2fo7_A Synthetic consensus TPR 99.4 5.6E-12 1.9E-16 98.8 13.6 112 327-438 2-113 (136)
86 2ho1_A Type 4 fimbrial biogene 99.4 9.4E-12 3.2E-16 109.5 16.4 116 323-438 102-219 (252)
87 2ho1_A Type 4 fimbrial biogene 99.4 1.6E-11 5.5E-16 107.9 17.9 114 321-434 136-249 (252)
88 3u4t_A TPR repeat-containing p 99.4 5.8E-12 2E-16 112.1 15.1 115 325-439 73-187 (272)
89 3mkr_A Coatomer subunit epsilo 99.4 1.2E-11 4E-16 111.6 17.0 117 323-439 127-245 (291)
90 2vgx_A Chaperone SYCD; alterna 99.4 8.9E-13 3.1E-17 106.1 8.5 94 346-439 7-100 (148)
91 3hym_B Cell division cycle pro 99.4 4.8E-12 1.6E-16 115.9 14.5 118 322-439 189-315 (330)
92 4eqf_A PEX5-related protein; a 99.4 5.6E-12 1.9E-16 117.6 14.9 113 327-439 178-292 (365)
93 2kat_A Uncharacterized protein 99.4 6.4E-12 2.2E-16 96.2 12.3 85 343-427 2-86 (115)
94 2vsy_A XCC0866; transferase, g 99.4 8.6E-12 2.9E-16 123.7 16.2 110 322-431 53-165 (568)
95 3ieg_A DNAJ homolog subfamily 99.4 3.1E-11 1.1E-15 111.6 18.8 113 329-441 237-353 (359)
96 3ieg_A DNAJ homolog subfamily 99.4 1.1E-11 3.9E-16 114.7 15.6 112 325-436 2-116 (359)
97 2y4t_A DNAJ homolog subfamily 99.4 1.3E-11 4.3E-16 118.5 16.1 118 319-436 19-139 (450)
98 3cv0_A Peroxisome targeting si 99.4 1.3E-11 4.4E-16 112.8 15.5 117 323-439 169-297 (327)
99 3u4t_A TPR repeat-containing p 99.4 6.8E-12 2.3E-16 111.7 13.0 117 321-438 32-153 (272)
100 2r5s_A Uncharacterized protein 99.3 6.4E-12 2.2E-16 104.3 11.8 120 319-439 33-155 (176)
101 3hym_B Cell division cycle pro 99.3 1.6E-11 5.5E-16 112.3 15.6 116 323-438 87-203 (330)
102 1na3_A Designed protein CTPR2; 99.3 1.7E-11 5.7E-16 89.2 12.3 86 323-408 6-91 (91)
103 2e2e_A Formate-dependent nitri 99.3 4.3E-12 1.5E-16 105.4 9.4 105 335-439 19-126 (177)
104 2xcb_A PCRH, regulatory protei 99.3 5.4E-12 1.9E-16 100.7 9.0 93 347-439 5-97 (142)
105 2y4t_A DNAJ homolog subfamily 99.3 6E-11 2.1E-15 113.8 16.8 110 330-439 261-374 (450)
106 1p5q_A FKBP52, FK506-binding p 99.3 2.9E-11 1E-15 111.4 13.6 100 324-423 194-294 (336)
107 1fch_A Peroxisomal targeting s 99.3 1.2E-10 4E-15 108.5 17.7 100 340-439 195-296 (368)
108 1xnf_A Lipoprotein NLPI; TPR, 99.3 7.6E-11 2.6E-15 104.9 15.7 109 322-430 73-251 (275)
109 2r5s_A Uncharacterized protein 99.3 5.8E-12 2E-16 104.6 7.7 116 323-439 3-119 (176)
110 1qqe_A Vesicular transport pro 99.3 5.8E-11 2E-15 107.2 14.3 107 323-429 74-193 (292)
111 2kc7_A BFR218_protein; tetratr 99.3 8.4E-12 2.9E-16 92.7 7.2 92 329-428 3-95 (99)
112 2xpi_A Anaphase-promoting comp 99.3 6.7E-11 2.3E-15 117.8 15.4 116 323-438 472-594 (597)
113 1a17_A Serine/threonine protei 99.3 7E-11 2.4E-15 96.5 12.9 103 322-424 43-147 (166)
114 2gw1_A Mitochondrial precursor 99.2 1E-10 3.5E-15 114.0 15.6 107 323-430 3-109 (514)
115 3ma5_A Tetratricopeptide repea 99.2 3.3E-11 1.1E-15 89.6 8.6 70 356-425 3-72 (100)
116 3edt_B KLC 2, kinesin light ch 99.2 1.2E-10 4E-15 103.8 13.8 117 322-438 39-179 (283)
117 2ond_A Cleavage stimulation fa 99.2 1.7E-10 6E-15 104.9 15.0 111 328-438 136-251 (308)
118 3fp2_A TPR repeat-containing p 99.2 1.3E-10 4.6E-15 114.0 14.9 114 326-439 276-389 (537)
119 3cv0_A Peroxisome targeting si 99.2 9.4E-11 3.2E-15 107.0 12.9 111 324-434 19-129 (327)
120 3dra_A Protein farnesyltransfe 99.2 8.5E-11 2.9E-15 105.7 12.2 121 319-439 60-191 (306)
121 1pc2_A Mitochondria fission pr 99.2 2E-10 6.7E-15 90.2 12.3 102 340-441 12-118 (152)
122 1qqe_A Vesicular transport pro 99.2 1.2E-10 4.1E-15 105.1 13.0 107 324-430 115-235 (292)
123 2ond_A Cleavage stimulation fa 99.2 2E-10 6.9E-15 104.4 14.3 117 322-438 95-213 (308)
124 1na3_A Designed protein CTPR2; 99.2 1.8E-10 6.2E-15 83.6 11.3 83 358-440 7-89 (91)
125 2xpi_A Anaphase-promoting comp 99.2 2.9E-10 1E-14 113.2 16.6 117 322-438 369-485 (597)
126 1zu2_A Mitochondrial import re 99.2 2.1E-10 7.2E-15 91.1 12.2 74 323-396 33-127 (158)
127 3upv_A Heat shock protein STI1 99.2 1.9E-10 6.5E-15 89.5 11.3 83 358-440 2-84 (126)
128 4g1t_A Interferon-induced prot 99.2 3.4E-10 1.2E-14 109.3 15.5 115 323-437 48-181 (472)
129 3k9i_A BH0479 protein; putativ 99.2 1.6E-10 5.4E-15 88.7 10.3 79 322-400 23-101 (117)
130 4f3v_A ESX-1 secretion system 99.2 6E-10 2.1E-14 97.9 14.9 114 321-436 131-249 (282)
131 1wao_1 Serine/threonine protei 99.2 5.4E-11 1.9E-15 114.9 8.9 105 323-427 37-154 (477)
132 3edt_B KLC 2, kinesin light ch 99.2 2.8E-10 9.6E-15 101.4 12.8 104 320-423 79-198 (283)
133 2lni_A Stress-induced-phosphop 99.2 2.2E-10 7.5E-15 89.6 10.5 88 322-409 46-133 (133)
134 2gw1_A Mitochondrial precursor 99.1 1.8E-10 6.3E-15 112.2 12.0 116 323-438 369-493 (514)
135 3fp2_A TPR repeat-containing p 99.1 9.8E-10 3.4E-14 107.8 17.3 114 325-439 242-355 (537)
136 3sz7_A HSC70 cochaperone (SGT) 99.1 1.7E-10 5.9E-15 94.3 10.0 84 322-405 41-124 (164)
137 4gcn_A Protein STI-1; structur 99.1 1.4E-10 4.8E-15 90.4 9.0 71 359-429 7-77 (127)
138 1dce_A Protein (RAB geranylger 99.1 4.2E-10 1.4E-14 110.7 14.4 122 319-440 56-190 (567)
139 1ouv_A Conserved hypothetical 99.1 1.2E-09 4.2E-14 97.3 16.3 111 323-439 35-157 (273)
140 2l6j_A TPR repeat-containing p 99.1 4.2E-10 1.5E-14 85.0 11.1 81 359-439 3-89 (111)
141 2vyi_A SGTA protein; chaperone 99.1 3.3E-10 1.1E-14 88.0 10.8 89 322-410 42-130 (131)
142 3q7a_A Farnesyltransferase alp 99.1 2.3E-10 7.9E-15 103.9 11.0 121 319-439 81-212 (349)
143 1ihg_A Cyclophilin 40; ppiase 99.1 7.1E-10 2.4E-14 103.3 14.6 96 321-416 268-363 (370)
144 1hxi_A PEX5, peroxisome target 99.1 6E-10 2.1E-14 86.0 11.9 78 362-439 19-96 (121)
145 3rkv_A Putative peptidylprolyl 99.1 2.4E-10 8.1E-15 93.3 10.1 90 322-411 59-149 (162)
146 3ma5_A Tetratricopeptide repea 99.1 2.5E-10 8.6E-15 84.8 9.3 85 322-406 3-89 (100)
147 2if4_A ATFKBP42; FKBP-like, al 99.1 5.9E-11 2E-15 109.4 6.9 104 327-430 231-335 (338)
148 1dce_A Protein (RAB geranylger 99.1 8.3E-10 2.8E-14 108.6 15.4 120 320-439 101-237 (567)
149 3dra_A Protein farnesyltransfe 99.1 7.1E-10 2.4E-14 99.7 13.1 120 321-440 98-232 (306)
150 2fbn_A 70 kDa peptidylprolyl i 99.1 4E-10 1.4E-14 95.3 10.9 97 326-422 88-185 (198)
151 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 3.7E-10 1.3E-14 108.6 11.8 93 324-416 315-407 (457)
152 3q49_B STIP1 homology and U bo 99.1 1.4E-09 4.9E-14 85.6 12.8 86 354-439 3-88 (137)
153 2c2l_A CHIP, carboxy terminus 99.1 1.9E-10 6.3E-15 103.2 8.5 114 322-437 34-178 (281)
154 4g1t_A Interferon-induced prot 99.1 1.3E-09 4.3E-14 105.3 14.7 115 322-436 90-217 (472)
155 3dss_A Geranylgeranyl transfer 99.1 2.1E-09 7E-14 97.3 15.0 118 321-438 103-237 (331)
156 2kck_A TPR repeat; tetratricop 99.1 4.8E-10 1.6E-14 84.6 9.2 85 355-439 1-87 (112)
157 3dss_A Geranylgeranyl transfer 99.1 3.6E-09 1.2E-13 95.7 16.4 122 319-440 57-191 (331)
158 3nf1_A KLC 1, kinesin light ch 99.1 5.3E-10 1.8E-14 101.2 11.1 105 322-426 149-310 (311)
159 4a1s_A PINS, partner of inscut 99.1 9.4E-10 3.2E-14 104.1 13.0 116 323-438 45-176 (411)
160 3ulq_A Response regulator aspa 99.1 9.8E-10 3.4E-14 103.1 12.7 104 322-425 180-295 (383)
161 1ouv_A Conserved hypothetical 99.1 5.2E-09 1.8E-13 93.1 16.7 109 325-439 73-193 (273)
162 2hr2_A Hypothetical protein; a 99.1 1.2E-09 4.1E-14 87.0 11.0 81 360-440 11-114 (159)
163 3nf1_A KLC 1, kinesin light ch 99.1 7.4E-10 2.5E-14 100.2 11.2 102 322-423 107-224 (311)
164 3ro3_A PINS homolog, G-protein 99.1 8.7E-10 3E-14 89.1 10.5 99 327-425 50-160 (164)
165 3qou_A Protein YBBN; thioredox 99.0 2.7E-09 9.1E-14 95.9 13.5 100 323-422 182-283 (287)
166 3rjv_A Putative SEL1 repeat pr 99.0 4.1E-09 1.4E-13 90.1 14.0 111 324-438 48-172 (212)
167 3bee_A Putative YFRE protein; 99.0 2.9E-09 9.9E-14 77.4 10.9 75 356-430 2-79 (93)
168 2qfc_A PLCR protein; TPR, HTH, 99.0 1.2E-08 3.9E-13 92.0 17.4 115 324-438 113-246 (293)
169 2kc7_A BFR218_protein; tetratr 99.0 3.3E-09 1.1E-13 78.3 11.5 75 364-438 4-81 (99)
170 3u3w_A Transcriptional activat 99.0 1.9E-09 6.4E-14 97.2 11.8 114 326-439 115-247 (293)
171 1na0_A Designed protein CTPR3; 99.0 3.9E-09 1.3E-13 81.1 11.8 86 323-408 40-125 (125)
172 2ifu_A Gamma-SNAP; membrane fu 99.0 2.1E-09 7.2E-14 97.6 11.9 105 324-430 114-230 (307)
173 3q7a_A Farnesyltransferase alp 99.0 2.2E-09 7.5E-14 97.5 11.6 119 321-439 118-253 (349)
174 3ulq_A Response regulator aspa 99.0 4.6E-09 1.6E-13 98.5 14.1 103 320-422 218-331 (383)
175 2ifu_A Gamma-SNAP; membrane fu 99.0 1.5E-09 5.3E-14 98.5 10.4 105 323-428 73-189 (307)
176 3u3w_A Transcriptional activat 99.0 4.1E-09 1.4E-13 95.0 13.1 102 323-424 152-267 (293)
177 3ro3_A PINS homolog, G-protein 99.0 3.8E-09 1.3E-13 85.3 11.2 105 321-425 4-120 (164)
178 3gw4_A Uncharacterized protein 99.0 2.5E-09 8.6E-14 90.3 10.5 104 323-426 63-179 (203)
179 3ro2_A PINS homolog, G-protein 99.0 4.5E-09 1.5E-13 95.8 13.0 104 325-428 4-117 (338)
180 2dba_A Smooth muscle cell asso 99.0 6.3E-09 2.2E-13 82.8 12.2 82 325-406 64-145 (148)
181 2kat_A Uncharacterized protein 99.0 2.8E-09 9.7E-14 81.2 9.6 86 322-407 15-102 (115)
182 1elw_A TPR1-domain of HOP; HOP 99.0 5.9E-09 2E-13 79.2 11.4 82 323-404 35-116 (118)
183 3rjv_A Putative SEL1 repeat pr 99.0 6.9E-09 2.4E-13 88.7 12.9 112 324-438 83-210 (212)
184 2qfc_A PLCR protein; TPR, HTH, 99.0 5.4E-09 1.8E-13 94.2 12.9 102 323-424 152-267 (293)
185 3q15_A PSP28, response regulat 99.0 1.4E-08 4.7E-13 95.1 15.9 104 323-426 179-293 (378)
186 3sf4_A G-protein-signaling mod 99.0 7.3E-09 2.5E-13 97.5 14.0 106 322-427 183-300 (406)
187 2xev_A YBGF; tetratricopeptide 99.0 1.1E-08 3.7E-13 79.5 12.7 85 323-407 36-123 (129)
188 3sf4_A G-protein-signaling mod 98.9 4.2E-09 1.4E-13 99.1 11.3 104 324-427 7-120 (406)
189 4a1s_A PINS, partner of inscut 98.9 4.4E-09 1.5E-13 99.4 11.4 104 323-426 220-335 (411)
190 3q15_A PSP28, response regulat 98.9 7.5E-09 2.6E-13 96.9 12.5 120 320-439 135-272 (378)
191 2v5f_A Prolyl 4-hydroxylase su 98.9 2.6E-08 8.9E-13 74.3 12.2 76 326-401 5-87 (104)
192 3ro2_A PINS homolog, G-protein 98.9 1.3E-08 4.3E-13 92.8 11.7 105 322-426 179-295 (338)
193 3n71_A Histone lysine methyltr 98.9 2.4E-08 8.3E-13 95.9 14.0 110 326-435 309-439 (490)
194 1nzn_A CGI-135 protein, fissio 98.9 7.2E-08 2.4E-12 72.7 13.4 104 338-441 13-121 (126)
195 2ooe_A Cleavage stimulation fa 98.9 2.4E-08 8.1E-13 98.0 14.2 117 322-438 317-435 (530)
196 3gw4_A Uncharacterized protein 98.9 1.1E-08 3.6E-13 86.4 10.1 103 323-425 23-138 (203)
197 4f3v_A ESX-1 secretion system 98.9 8.8E-09 3E-13 90.5 9.6 113 326-439 102-219 (282)
198 1klx_A Cysteine rich protein B 98.8 2E-07 6.8E-12 73.5 15.7 98 332-435 31-136 (138)
199 3qww_A SET and MYND domain-con 98.8 3.3E-08 1.1E-12 93.3 13.0 106 333-438 305-431 (433)
200 3qwp_A SET and MYND domain-con 98.8 6.1E-08 2.1E-12 91.7 13.5 113 326-438 287-420 (429)
201 3bee_A Putative YFRE protein; 98.8 2.9E-08 9.8E-13 72.1 8.4 72 322-393 2-76 (93)
202 2ooe_A Cleavage stimulation fa 98.8 6.1E-08 2.1E-12 95.1 13.5 112 322-433 268-395 (530)
203 3n71_A Histone lysine methyltr 98.8 4.1E-08 1.4E-12 94.3 11.6 111 318-428 343-469 (490)
204 1elr_A TPR2A-domain of HOP; HO 98.7 3.8E-08 1.3E-12 76.2 9.0 80 359-438 3-89 (131)
205 2v5f_A Prolyl 4-hydroxylase su 98.7 9.2E-08 3.2E-12 71.3 10.6 80 361-440 6-92 (104)
206 1hz4_A MALT regulatory protein 98.6 6.7E-07 2.3E-11 83.2 14.7 98 329-426 96-206 (373)
207 3u64_A Protein TP_0956; tetrat 98.6 3.1E-07 1E-11 79.8 11.1 86 341-426 178-272 (301)
208 1pc2_A Mitochondria fission pr 98.6 4.1E-07 1.4E-11 71.3 10.8 80 324-403 30-114 (152)
209 2xm6_A Protein corresponding t 98.6 3.5E-07 1.2E-11 88.7 12.9 108 325-436 327-448 (490)
210 3ly7_A Transcriptional activat 98.6 1.5E-06 5.1E-11 78.8 14.7 103 326-429 196-345 (372)
211 1hz4_A MALT regulatory protein 98.5 5.4E-07 1.8E-11 83.9 12.4 103 322-424 10-123 (373)
212 3e4b_A ALGK; tetratricopeptide 98.5 8.2E-07 2.8E-11 85.1 13.7 105 328-437 178-292 (452)
213 2xm6_A Protein corresponding t 98.5 1.8E-06 6.1E-11 83.7 16.1 110 324-439 73-194 (490)
214 1klx_A Cysteine rich protein B 98.5 1.7E-06 6E-11 68.0 11.8 93 339-439 8-104 (138)
215 3e4b_A ALGK; tetratricopeptide 98.5 1.1E-06 3.9E-11 84.1 12.6 108 323-438 245-364 (452)
216 3mv2_B Coatomer subunit epsilo 98.5 2.8E-06 9.7E-11 75.6 13.9 112 323-437 133-264 (310)
217 3o48_A Mitochondria fission 1 98.4 6.7E-06 2.3E-10 62.1 12.5 84 358-441 38-125 (134)
218 3mv2_B Coatomer subunit epsilo 98.4 3.2E-06 1.1E-10 75.3 12.3 104 328-436 178-295 (310)
219 1y8m_A FIS1; mitochondria, unk 98.4 1.3E-05 4.5E-10 61.3 13.9 85 357-441 36-124 (144)
220 1xi4_A Clathrin heavy chain; a 98.3 1E-05 3.4E-10 84.8 14.2 94 322-420 1101-1221(1630)
221 3ffl_A Anaphase-promoting comp 98.2 1E-05 3.5E-10 63.7 9.8 112 326-438 20-165 (167)
222 1xi4_A Clathrin heavy chain; a 98.1 1.8E-05 6.3E-10 82.9 12.9 104 327-438 1196-1324(1630)
223 1b89_A Protein (clathrin heavy 98.1 1.5E-05 5E-10 74.4 10.7 103 327-438 149-251 (449)
224 3qwp_A SET and MYND domain-con 98.1 1.5E-05 5.3E-10 75.2 10.8 89 318-406 321-425 (429)
225 3qww_A SET and MYND domain-con 98.0 1.8E-05 6.2E-10 74.7 10.0 79 318-396 332-423 (433)
226 4b4t_Q 26S proteasome regulato 98.0 4.6E-05 1.6E-09 72.2 12.6 103 323-425 92-206 (434)
227 1nzn_A CGI-135 protein, fissio 98.0 4.6E-05 1.6E-09 57.4 9.2 80 324-403 33-117 (126)
228 4b4t_Q 26S proteasome regulato 97.8 5.7E-05 2E-09 71.5 9.5 102 323-424 132-246 (434)
229 3o48_A Mitochondria fission 1 97.8 0.00019 6.4E-09 54.2 9.9 80 325-404 39-122 (134)
230 3ly7_A Transcriptional activat 97.8 7.6E-05 2.6E-09 67.7 9.2 74 321-395 272-345 (372)
231 1y8m_A FIS1; mitochondria, unk 97.7 0.00041 1.4E-08 53.1 10.6 80 324-403 37-120 (144)
232 4e6h_A MRNA 3'-END-processing 97.6 0.00052 1.8E-08 68.5 12.2 114 325-438 433-551 (679)
233 4e6h_A MRNA 3'-END-processing 97.6 0.0006 2E-08 68.1 12.6 111 323-433 375-509 (679)
234 3u64_A Protein TP_0956; tetrat 97.5 0.00022 7.6E-09 62.0 7.9 70 324-393 197-273 (301)
235 1b89_A Protein (clathrin heavy 97.5 9.4E-05 3.2E-09 69.0 5.9 87 327-427 123-209 (449)
236 4h7y_A Dual specificity protei 97.5 0.0017 5.7E-08 50.1 11.4 109 322-431 9-131 (161)
237 3ffl_A Anaphase-promoting comp 97.1 0.0054 1.9E-07 48.3 10.9 81 323-404 60-165 (167)
238 2uy1_A Cleavage stimulation fa 96.9 0.017 6E-07 55.5 14.5 111 323-435 210-361 (493)
239 2ff4_A Probable regulatory pro 96.8 0.023 7.7E-07 52.8 14.3 62 361-422 172-233 (388)
240 4g26_A Pentatricopeptide repea 96.6 0.075 2.6E-06 51.1 16.5 99 325-423 104-204 (501)
241 3kae_A CDC27, possible protein 96.6 0.039 1.3E-06 43.3 11.3 96 327-427 34-147 (242)
242 2uy1_A Cleavage stimulation fa 96.5 0.05 1.7E-06 52.3 14.5 95 325-420 285-380 (493)
243 4h7y_A Dual specificity protei 96.3 0.19 6.5E-06 38.8 13.5 87 321-409 56-142 (161)
244 4gns_B Protein CSD3, chitin bi 96.1 0.013 4.6E-07 58.6 8.4 80 341-420 300-397 (754)
245 1zbp_A Hypothetical protein VP 96.1 0.11 3.7E-06 44.5 12.6 61 334-394 5-65 (273)
246 1ya0_A SMG-7 transcript varian 95.9 0.062 2.1E-06 51.2 11.3 81 327-407 153-233 (497)
247 4gns_B Protein CSD3, chitin bi 95.6 0.041 1.4E-06 55.1 9.1 63 324-386 335-397 (754)
248 1ya0_A SMG-7 transcript varian 95.0 0.17 5.7E-06 48.3 10.9 48 323-370 183-230 (497)
249 3kae_A CDC27, possible protein 94.8 1.1 3.8E-05 35.2 13.6 66 325-390 61-144 (242)
250 4b4t_R RPN7, 26S proteasome re 94.8 0.25 8.4E-06 46.4 11.5 103 325-427 130-241 (429)
251 3txn_A 26S proteasome regulato 94.4 0.41 1.4E-05 44.0 11.8 98 328-425 101-212 (394)
252 1zbp_A Hypothetical protein VP 94.3 0.19 6.5E-06 43.1 8.6 69 369-437 6-74 (273)
253 2ff4_A Probable regulatory pro 94.2 0.17 6E-06 46.7 9.0 62 327-388 172-233 (388)
254 4g26_A Pentatricopeptide repea 94.2 0.5 1.7E-05 45.4 12.4 85 339-423 83-169 (501)
255 4b4t_S RPN3, 26S proteasome re 94.2 0.073 2.5E-06 50.4 6.3 107 324-430 179-306 (523)
256 4b4t_P 26S proteasome regulato 94.0 1.5 5.2E-05 41.2 15.2 106 318-423 129-247 (445)
257 3spa_A Mtrpol, DNA-directed RN 93.5 1.5 5.2E-05 45.3 14.6 102 323-424 124-231 (1134)
258 3mkq_B Coatomer subunit alpha; 92.8 0.82 2.8E-05 36.6 9.4 19 402-420 97-115 (177)
259 3mkq_A Coatomer beta'-subunit; 92.3 0.6 2.1E-05 47.6 10.4 80 335-419 661-761 (814)
260 3txn_A 26S proteasome regulato 90.7 3.8 0.00013 37.6 12.7 71 365-435 104-183 (394)
261 1qsa_A Protein (soluble lytic 90.5 2.8 9.5E-05 41.2 12.3 98 324-422 250-347 (618)
262 3mkq_B Coatomer subunit alpha; 89.7 3 0.0001 33.3 9.7 29 325-353 33-61 (177)
263 3mkq_A Coatomer beta'-subunit; 89.5 3.7 0.00013 41.6 13.1 86 325-418 680-773 (814)
264 4fhn_B Nucleoporin NUP120; pro 87.9 1.8 6E-05 46.3 9.5 93 328-420 844-964 (1139)
265 3t5v_B Nuclear mRNA export pro 84.8 2.4 8.2E-05 39.7 7.6 64 364-427 180-254 (455)
266 2wpv_A GET4, UPF0363 protein Y 84.7 20 0.00069 31.5 13.4 95 324-418 51-158 (312)
267 4gq2_M Nucleoporin NUP120; bet 83.2 11 0.00037 39.3 12.4 95 332-430 816-934 (950)
268 4b4t_S RPN3, 26S proteasome re 83.1 2.3 7.8E-05 40.4 6.6 69 323-393 228-303 (523)
269 3lpz_A GET4 (YOR164C homolog); 83.0 25 0.00086 31.3 14.0 40 378-417 120-159 (336)
270 1wy6_A Hypothetical protein ST 82.8 14 0.00047 28.1 9.9 57 368-424 99-155 (172)
271 4b4t_R RPN7, 26S proteasome re 82.0 4.1 0.00014 38.0 8.1 66 359-424 130-198 (429)
272 4fhn_B Nucleoporin NUP120; pro 79.6 7.8 0.00027 41.3 10.2 92 332-427 818-932 (1139)
273 2ijq_A Hypothetical protein; s 77.3 20 0.00067 28.0 9.2 63 327-389 33-104 (161)
274 3ax2_A Mitochondrial import re 77.1 8 0.00027 25.6 5.9 36 400-435 23-58 (73)
275 3ax2_A Mitochondrial import re 75.8 6.7 0.00023 26.0 5.2 33 330-362 21-53 (73)
276 1wy6_A Hypothetical protein ST 74.8 15 0.0005 28.0 7.3 54 337-390 102-155 (172)
277 2crb_A Nuclear receptor bindin 73.3 6.4 0.00022 27.2 4.7 30 325-354 14-43 (97)
278 2w2u_A Hypothetical P60 katani 73.3 19 0.00065 24.5 7.4 32 324-355 17-48 (83)
279 2cfu_A SDSA1; SDS-hydrolase, l 72.6 6.9 0.00024 38.8 7.0 45 330-374 453-497 (658)
280 3t5x_A PCI domain-containing p 71.5 10 0.00035 31.1 6.7 33 361-393 15-47 (203)
281 3t5x_A PCI domain-containing p 70.9 11 0.00038 30.9 6.8 39 322-360 10-48 (203)
282 2v6y_A AAA family ATPase, P60 70.0 23 0.00078 24.1 7.5 31 325-355 10-40 (83)
283 3mkr_B Coatomer subunit alpha; 67.7 64 0.0022 28.4 13.2 100 330-429 106-233 (320)
284 1qsa_A Protein (soluble lytic 61.5 87 0.003 30.6 12.1 91 333-423 292-410 (618)
285 2vkj_A TM1634; membrane protei 60.3 24 0.00081 24.1 5.3 33 324-356 51-83 (106)
286 2crb_A Nuclear receptor bindin 59.9 16 0.00055 25.2 4.5 29 360-388 15-43 (97)
287 4b4t_P 26S proteasome regulato 59.6 76 0.0026 29.5 11.0 70 320-389 171-247 (445)
288 2v6x_A Vacuolar protein sortin 59.3 16 0.00054 25.0 4.7 30 325-354 12-41 (85)
289 1om2_A Protein (mitochondrial 59.1 15 0.00052 25.7 4.5 28 365-392 25-52 (95)
290 4a5x_A MITD1, MIT domain-conta 59.0 40 0.0014 23.0 7.7 31 325-355 15-45 (86)
291 2cpt_A SKD1 protein, vacuolar 57.1 15 0.00052 26.9 4.5 30 325-354 17-46 (117)
292 3spa_A Mtrpol, DNA-directed RN 57.0 46 0.0016 34.7 9.3 63 361-423 128-194 (1134)
293 1om2_A Protein (mitochondrial 56.6 13 0.00046 26.0 3.9 29 331-359 25-53 (95)
294 3u85_B Histone-lysine N-methyl 55.9 3.1 0.00011 19.3 0.4 7 2-8 9-15 (21)
295 1wfd_A Hypothetical protein 15 54.8 51 0.0017 22.9 7.7 32 324-355 13-44 (93)
296 3re2_A Predicted protein; meni 54.5 66 0.0023 28.7 8.6 23 363-385 299-321 (472)
297 4gq2_M Nucleoporin NUP120; bet 53.8 42 0.0014 34.9 8.8 52 366-421 816-867 (950)
298 2cwy_A Hypothetical protein TT 51.7 35 0.0012 23.8 5.5 57 330-388 5-67 (94)
299 2rpa_A Katanin P60 ATPase-cont 49.5 20 0.00069 24.0 3.7 30 326-355 12-41 (78)
300 2p58_C Putative type III secre 49.3 30 0.001 24.5 4.6 81 331-417 12-92 (116)
301 3u84_A Menin; MLL, JUND, ledgf 48.8 85 0.0029 28.7 8.6 29 394-422 318-346 (550)
302 3mv2_A Coatomer subunit alpha; 47.5 1.5E+02 0.005 26.1 14.6 103 330-432 118-245 (325)
303 2cfu_A SDSA1; SDS-hydrolase, l 46.9 34 0.0012 33.9 6.6 51 361-411 450-500 (658)
304 2w2u_A Hypothetical P60 katani 45.7 30 0.001 23.5 4.2 16 413-428 45-60 (83)
305 2dl1_A Spartin; SPG20, MIT, st 45.4 19 0.00065 26.2 3.3 45 339-391 16-60 (116)
306 2v6y_A AAA family ATPase, P60 43.4 34 0.0011 23.2 4.2 17 412-428 36-52 (83)
307 2yhe_A SEC-alkyl sulfatase; hy 48.2 5.4 0.00018 39.6 0.0 51 327-377 462-512 (668)
308 2npu_A FKBP12-rapamycin comple 41.7 64 0.0022 23.9 5.7 71 332-405 46-121 (126)
309 4gq4_A Menin; tumor suppressor 41.6 2.1E+02 0.0072 26.2 10.3 42 345-386 283-329 (489)
310 3t5v_B Nuclear mRNA export pro 41.2 55 0.0019 30.5 6.7 35 324-358 218-253 (455)
311 1wfd_A Hypothetical protein 15 40.7 60 0.002 22.5 5.3 16 341-356 11-26 (93)
312 2uwj_G Type III export protein 40.6 20 0.0007 25.3 2.7 81 331-417 11-91 (115)
313 3esl_A Checkpoint serine/threo 39.0 1.5E+02 0.0053 23.9 12.9 96 329-425 36-146 (202)
314 4aez_C MAD3, mitotic spindle c 37.8 1.1E+02 0.0037 25.3 7.1 69 318-392 112-182 (223)
315 4a5x_A MITD1, MIT domain-conta 37.1 48 0.0016 22.6 4.2 17 405-421 27-43 (86)
316 2rpa_A Katanin P60 ATPase-cont 36.2 36 0.0012 22.8 3.3 25 398-422 16-40 (78)
317 2dl1_A Spartin; SPG20, MIT, st 35.9 83 0.0028 22.9 5.4 28 326-353 22-49 (116)
318 2uwj_G Type III export protein 35.8 1.2E+02 0.0039 21.6 11.4 55 328-387 41-95 (115)
319 2p58_C Putative type III secre 35.5 1.2E+02 0.004 21.5 12.2 56 327-387 41-96 (116)
320 2npu_A FKBP12-rapamycin comple 34.3 1.2E+02 0.0041 22.4 6.2 71 366-439 46-121 (126)
321 4b4t_O 26S proteasome regulato 33.7 2.7E+02 0.0093 25.2 10.8 88 335-422 85-197 (393)
322 4a1g_A Mitotic checkpoint seri 33.5 1.6E+02 0.0055 22.6 8.6 68 318-391 63-132 (152)
323 3myv_A SUSD superfamily protei 33.4 1E+02 0.0035 28.7 7.3 29 360-388 190-218 (454)
324 2wpv_A GET4, UPF0363 protein Y 31.7 1.7E+02 0.0059 25.6 8.0 85 323-422 131-216 (312)
325 1wcr_A PTS system, N, N'-diace 31.6 70 0.0024 22.7 4.4 32 323-354 15-46 (103)
326 3kez_A Putative sugar binding 31.5 1.1E+02 0.0039 28.4 7.4 29 360-388 196-224 (461)
327 2wvi_A Mitotic checkpoint seri 31.4 1.8E+02 0.0063 22.6 9.7 68 318-391 58-127 (164)
328 3bqo_A Telomeric repeat-bindin 31.4 32 0.0011 27.8 2.8 48 332-379 123-170 (211)
329 2e2a_A Protein (enzyme IIA); h 31.2 71 0.0024 22.8 4.4 32 323-354 17-48 (105)
330 3ph0_C ASCG; type III secretio 31.2 95 0.0032 19.2 6.6 42 338-380 18-60 (61)
331 2v6x_A Vacuolar protein sortin 30.8 68 0.0023 21.7 4.2 10 407-416 26-35 (85)
332 2cpt_A SKD1 protein, vacuolar 30.0 62 0.0021 23.6 4.1 16 413-428 44-59 (117)
333 2ijq_A Hypothetical protein; s 29.9 1.9E+02 0.0067 22.4 8.7 60 364-423 36-104 (161)
334 2pmr_A Uncharacterized protein 29.3 1.4E+02 0.0047 20.4 6.4 30 321-350 34-63 (87)
335 3esl_A Checkpoint serine/threo 29.3 2.3E+02 0.0078 23.0 13.1 74 317-391 71-146 (202)
336 3lew_A SUSD-like carbohydrate 28.9 1.3E+02 0.0045 28.3 7.4 30 360-389 203-232 (495)
337 3re2_A Predicted protein; meni 28.6 1.2E+02 0.004 27.2 6.1 29 394-422 296-324 (472)
338 3mcx_A SUSD superfamily protei 28.3 1.2E+02 0.0043 28.3 7.1 29 360-388 202-230 (477)
339 3qtm_A Uncharacterized protein 28.3 2.8E+02 0.0095 23.6 8.2 83 324-406 20-131 (346)
340 3k1s_A PTS system, cellobiose- 28.2 86 0.0029 22.5 4.4 32 323-354 19-50 (109)
341 4aez_C MAD3, mitotic spindle c 27.9 2.6E+02 0.0087 23.1 9.7 96 329-426 78-182 (223)
342 2l1l_A CAMP-dependent protein 27.3 25 0.00086 18.0 1.1 24 4-27 1-24 (27)
343 3myv_A SUSD superfamily protei 26.8 1.5E+02 0.005 27.6 7.2 31 393-423 189-219 (454)
344 3l8r_A PTCA, putative PTS syst 26.5 94 0.0032 22.8 4.4 32 323-354 34-65 (120)
345 1o3u_A Conserved hypothetical 26.4 1.9E+02 0.0066 21.4 6.5 33 323-355 13-45 (135)
346 2oo2_A Hypothetical protein AF 25.5 1.6E+02 0.0056 20.0 6.6 31 320-350 29-59 (86)
347 3bqo_A Telomeric repeat-bindin 25.2 57 0.002 26.3 3.3 34 403-436 126-159 (211)
348 3u84_A Menin; MLL, JUND, ledgf 25.0 1.4E+02 0.0049 27.2 6.1 43 345-387 298-345 (550)
349 3lew_A SUSD-like carbohydrate 24.7 1.6E+02 0.0056 27.7 7.2 33 392-424 201-233 (495)
350 3kez_A Putative sugar binding 24.5 1.6E+02 0.0055 27.4 7.0 31 393-423 195-225 (461)
351 3lpz_A GET4 (YOR164C homolog); 24.5 3.7E+02 0.013 23.8 15.0 63 325-387 135-214 (336)
352 3mcx_A SUSD superfamily protei 24.3 1.8E+02 0.0061 27.2 7.3 48 377-424 177-232 (477)
353 2o8p_A 14-3-3 domain containin 23.8 3.1E+02 0.011 22.7 10.4 48 341-388 140-196 (227)
354 2vt8_A HPI31, PI31, proteasome 22.8 39 0.0013 26.1 1.9 35 10-44 30-71 (153)
355 2qx5_A Nucleoporin NIC96; mRNA 22.5 3.7E+02 0.012 26.5 9.2 99 328-427 445-570 (661)
356 2yhe_A SEC-alkyl sulfatase; hy 28.1 18 0.00063 35.8 0.0 53 361-413 462-514 (668)
357 4ady_A RPN2, 26S proteasome re 22.3 6.7E+02 0.023 26.0 11.9 26 397-422 233-258 (963)
358 3eab_A Spastin; spastin, MIT, 21.6 55 0.0019 22.5 2.2 18 340-357 11-28 (89)
359 1ycp_F Fibrinopeptide A-alpha; 21.3 25 0.00087 17.7 0.4 9 26-34 11-19 (26)
360 2rkl_A Vacuolar protein sortin 20.7 1.5E+02 0.0053 18.0 4.5 32 324-355 18-49 (53)
361 3fap_B FRAP, FKBP12-rapamycin 20.2 2.2E+02 0.0077 19.7 6.5 53 334-389 18-73 (94)
No 1
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=2.5e-57 Score=425.36 Aligned_cols=280 Identities=22% Similarity=0.272 Sum_probs=234.9
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+||||||||||+||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||++|++.++++
T Consensus 127 ~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~ 206 (414)
T 1o9p_A 127 SPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLA 206 (414)
T ss_dssp CCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHcCCCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcc---cCCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchhhhhccchhH
Q 013459 81 LLQLPFA---AQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL 155 (442)
Q Consensus 81 ~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 155 (442)
+.+.+.. ....+.||++..+... ...++++.++++++++.|+ |+.+ ++++ +|.... .+
T Consensus 207 l~g~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v-~~~~--------~~~~~~------~~ 269 (414)
T 1o9p_A 207 MTGRSEFSGIVPAKAPRIGVVRQEFA--GAVEPAAEQGLQAAIKAAERAGASV-QAID--------LPEAVH------EA 269 (414)
T ss_dssp HHCCGGGSSCCCCSSCEEEECCCGGG--CCCCHHHHHHHHHHHHHHHHTTCEE-EECC--------CCHHHH------HH
T ss_pred hcCCCccccccCCCCCEEEEECcccc--CCCCHHHHHHHHHHHHHHHHCCCEE-EEec--------CcchHH------HH
Confidence 9876521 1245678888766532 2356889999999999997 4444 2222 222110 12
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCC
Q 013459 156 KNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPP 235 (442)
Q Consensus 156 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~ 235 (442)
...+..++..|....+..++......+.|.++.++..+..++..+|.++++.|+.+++.++++|+++|+||+||++.++|
T Consensus 270 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~ 349 (414)
T 1o9p_A 270 WRIHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAP 349 (414)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHSGGGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCC
Confidence 33344566678887888888877778999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHHHHHHH
Q 013459 236 KLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 304 (442)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~~ 304 (442)
+++...... ..||.++|++|+|+++||++...|+|+|+|+++++++|..+++++..+++.+.
T Consensus 350 ~~~~~~~~~-------~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~a~~le~~~~ 411 (414)
T 1o9p_A 350 AKALASTGD-------PRYNRLWTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDALA 411 (414)
T ss_dssp BGGGCCCCC-------GGGTHHHHHHCCCEEEEEEEEETTEEEEEEEEESTTCHHHHHHHHHHHHHHHH
T ss_pred cccccCCcc-------cchhhhhHhcCCCeEEeeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence 875321111 25799999999999999998756999999999999999999999999987653
No 2
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=2.1e-57 Score=429.01 Aligned_cols=282 Identities=26% Similarity=0.366 Sum_probs=235.9
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+||||||||||+||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||++|++.++++
T Consensus 143 ~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~ 222 (434)
T 2dc0_A 143 QAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEI 222 (434)
T ss_dssp BCCSSSHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHcCCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcccC--CCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccCCchhhhhccchhHH
Q 013459 81 LLQLPFAAQ--RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELK 156 (442)
Q Consensus 81 ~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 156 (442)
+.+. ..++ ..+.||++..+... ...++++.++++++++.|+ |+.+ ++++ +| +.. ..
T Consensus 223 l~g~-~~d~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v-~~~~--------~p-~~~-------~~ 282 (434)
T 2dc0_A 223 LAGE-SIPLEGVQNPVFGVPLDFLE--GRLGVEVRKAFTRLLEDLPALRAEV-REVS--------LP-LEG-------VY 282 (434)
T ss_dssp HHTS-CCCCCCCCSCEEEECHHHHT--TCSCHHHHHHHHHHHHHTTTTTCEE-EECC--------CC-CTT-------HH
T ss_pred HhCC-CCCcccccCCEEEEECcccc--CCCCHHHHHHHHHHHHHHHHCCCEE-EEeC--------CC-cHH-------HH
Confidence 9876 3332 45678888766432 2356889999999999997 4433 2222 22 221 22
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCC
Q 013459 157 NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPK 236 (442)
Q Consensus 157 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~ 236 (442)
..+..+...|....+..++..+...+.|.++.++..+..++..+|.++++.|..+++.+.++|+++|+||+||++.+||+
T Consensus 283 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~ 362 (434)
T 2dc0_A 283 EVYTRLVRYEAARIHEKALKEHPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPP 362 (434)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHCGGGSCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCB
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhcCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCcc
Confidence 33445566777777777777777789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc----ccHHHHHHHhhhhccccccccceeeecCccCCCCceeEEEecccCCcHHHHHHHHHHHHH
Q 013459 237 LGGKEM----LSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 302 (442)
Q Consensus 237 ~~~~~~----~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~~ 302 (442)
++.... ........+..||.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~ 432 (434)
T 2dc0_A 363 LGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAKVEGMPVGLQVVGAYGEDGKVLALGGWLEAR 432 (434)
T ss_dssp TTCCEEEETTEEEEHHHHHHTTTHHHHHTTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHTT
T ss_pred CcccccccccchhhhhhhhhhhhhhhhhhCCCeEEEecCCCCCCCeEEEEECCCCchHHHHHHHHHHHHh
Confidence 876421 111122234678999999999999999998789999999999999999999999988753
No 3
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=6.3e-56 Score=421.66 Aligned_cols=281 Identities=25% Similarity=0.383 Sum_probs=222.3
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|.++++|++||||||++|++.++++
T Consensus 137 ~~GGSSgGsaaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~ 216 (471)
T 3kfu_E 137 VPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDA 216 (471)
T ss_dssp CCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHCCCCccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccC
Q 013459 81 LLQLPFAA----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKV 142 (442)
Q Consensus 81 ~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~ 142 (442)
+.+.+..+ ...+.||++..++. ...++++.++++++++.|+ |+.+ ++++ +
T Consensus 217 l~g~d~~d~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~---~~~~p~v~~a~~~a~~~L~~~G~~v-~~v~--------~ 284 (471)
T 3kfu_E 217 AAGPDPLDATSLDLPPRFQEALEGPLPPLRLGVVREAL---AGNSPGVERALEEALKVFRELGLSV-REVS--------W 284 (471)
T ss_dssp HCSCCTTCTTCCCCCCCTTCCSCCCCSSCEEEEEGGGT---TTCCHHHHHHHHHHHHHHHTTTCEE-EEEC--------C
T ss_pred hcCCCcccccccCCCcchhhhhccCCCCCEEEEECCcc---CCCCHHHHHHHHHHHHHHHHcCCee-eeec--------C
Confidence 98754322 13456888877654 3457899999999999997 4444 2222 2
Q ss_pred CchhhhhccchhHHHHHHHHHHHHHHHhh-----------------HHHHHhhCCCCCHhHHHHHHhcccC-----CHHH
Q 013459 143 PSLKGFHKTNGELKNVMRLIQRYEFKNNH-----------------NEWIESVKPALDPDISAEIGEMLEI-----SETV 200 (442)
Q Consensus 143 p~~~~~~~~~~~~~~~~~~~~~~e~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 200 (442)
|.+.. ....+..+...|+..++ .+++......+++.+..++..+... +..+
T Consensus 285 p~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 357 (471)
T 3kfu_E 285 PSLPQ-------ALAAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAY 357 (471)
T ss_dssp TTGGG-------HHHHHHHHHHHHHHHHGGGCSTTTTSCCCCCSSSHHHHHHHHTTSCHHHHHHHHHHHHHHSTTTTTTT
T ss_pred ccHHH-------HHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhhhcCHHHHHHHHhcccccccccCHHH
Confidence 33221 22334444445544332 2223322233888888887665422 3358
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccCCCCceeE
Q 013459 201 IENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSV 280 (442)
Q Consensus 201 ~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g~ 280 (442)
|.++++.|..+++.++++|+++|+||+||++.+||+++.... ..... ....||.++|++|+|+++||+|..+|+|+|+
T Consensus 358 ~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~-~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGl 435 (471)
T 3kfu_E 358 YGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARRD-PLAMY-REDLYTVGANLTGLPALSFPAGFEGHLPVGL 435 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSCCBTTTTCS-HHHHH-GGGTTTHHHHHHCCCEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEeCCcCCCCCccccccc-hHHHH-HHhhhhhcchhhCCCeEEEeCCCCCCCCeEE
Confidence 999999999999999999999999999999999999876432 21111 2223899999999999999999878999999
Q ss_pred EEecccCCcHHHHHHHHHHHHH
Q 013459 281 SFIARHGGDRFLLDTVQNMYAS 302 (442)
Q Consensus 281 ~~~~~~~~d~~ll~~~~~~~~~ 302 (442)
|+++++++|..+++++..+|+.
T Consensus 436 Qlvg~~~~D~~LL~~A~~lE~~ 457 (471)
T 3kfu_E 436 QLLAPWGEDERLLRAALAFEEA 457 (471)
T ss_dssp EEECSTTCHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998874
No 4
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=1.5e-55 Score=422.77 Aligned_cols=283 Identities=24% Similarity=0.343 Sum_probs=221.1
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||++|++.++++
T Consensus 150 ~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~v 229 (485)
T 3ip4_A 150 VPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEA 229 (485)
T ss_dssp CCCSSSHHHHHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHH
T ss_pred CCCCCccHHHHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--ccccccccccccccccc
Q 013459 81 LLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSK 141 (442)
Q Consensus 81 ~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~ 141 (442)
+.+.+..+ ...+.||++..+++. ...++++.++++++++.|+ |+.+ ++++
T Consensus 230 l~g~d~~d~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v-~~~~-------- 298 (485)
T 3ip4_A 230 ISGADVNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLG--EGVADDVKEAVQNAVETLKSLGAVV-EEVS-------- 298 (485)
T ss_dssp HBSCCTTCTTSCCCCCCCCSTTTTCCCTTCEEEEEGGGGS--TTSCHHHHHHHHHHHHHHHHTTCEE-EEEC--------
T ss_pred hcCCCcccccccccCccchhhhhccCccCcEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCCEE-EEeC--------
Confidence 98754322 134578888776542 2356889999999999997 5544 2222
Q ss_pred CCchhhhhccchhHHHHHHHHHHHHHHHhhHH-------------------HHHhhCCCCCHhHHHHHHhccc-----CC
Q 013459 142 VPSLKGFHKTNGELKNVMRLIQRYEFKNNHNE-------------------WIESVKPALDPDISAEIGEMLE-----IS 197 (442)
Q Consensus 142 ~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~-----~~ 197 (442)
+|.+.. ....+..+...|+..++.. +.......+++.+..++..+.. ..
T Consensus 299 ~p~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 371 (485)
T 3ip4_A 299 LPNTKF-------GIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYY 371 (485)
T ss_dssp CTTGGG-------HHHHHHHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTT
T ss_pred CCcHHH-------HHHHHHHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhh
Confidence 232211 2233344444454443221 1122223467777777665431 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccCCCCc
Q 013459 198 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCP 277 (442)
Q Consensus 198 ~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp 277 (442)
..+|.++++.|..+++.+.++|+++|+||+||++.+||+++.......... ....||.++|++|+|+++||+|..+|+|
T Consensus 372 ~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlP 450 (485)
T 3ip4_A 372 DAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMY-ANDLLTTPVNLAGLPGISVPCGQSNGRP 450 (485)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHh-hhhhhhhhhHhhCCCeEEEeCCcCCCCC
Confidence 245889999999999999999999999999999999999886533322221 2234899999999999999999889999
Q ss_pred eeEEEecccCCcHHHHHHHHHHHHH
Q 013459 278 TSVSFIARHGGDRFLLDTVQNMYAS 302 (442)
Q Consensus 278 ~g~~~~~~~~~d~~ll~~~~~~~~~ 302 (442)
+|+|+++++++|..+++++..+|+.
T Consensus 451 vGlqlvg~~~~d~~lL~~A~~lE~~ 475 (485)
T 3ip4_A 451 IGLQFIGKPFDEKTLYRVAYQYETQ 475 (485)
T ss_dssp EEEEEECSTTCHHHHHHHHHHHHHH
T ss_pred EeEEEEcCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999875
No 5
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=1.4e-55 Score=424.52 Aligned_cols=284 Identities=23% Similarity=0.310 Sum_probs=222.4
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|.++++|++||||||++|++.++++
T Consensus 167 ~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~v 246 (521)
T 3a1k_A 167 EAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSV 246 (521)
T ss_dssp ECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHHHHHHHHH
T ss_pred CCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcccC------------------CCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccc
Q 013459 81 LLQLPFAAQ------------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS 140 (442)
Q Consensus 81 ~~~~~~~~~------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~ 140 (442)
|.+.++.++ ..+.||++..+.+.. ...++++.++++++++.|+ |+.+ +++++
T Consensus 247 lag~d~~D~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~Ga~v-~ev~~------ 318 (521)
T 3a1k_A 247 IAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREGFGH-AVSQPEVDDAVRAAAHSLTEIGCTV-EEVNI------ 318 (521)
T ss_dssp HCSCCSSCTTSCTTCCCCCSSTTTTSCCTTCEEEEEGGGSCC-SSSCHHHHHHHHHHHHGGGGGTCEE-EEECC------
T ss_pred HhCCCCCCccccccCCCcchhhhhccCccCcEEEEECccccc-cCCCHHHHHHHHHHHHHHHHCCCEE-EEeCC------
Confidence 987543221 245678887664321 1246789999999999997 4444 22222
Q ss_pred cCCchhhhhccchhHHHHHHHHHH----------------------HHHHHhhHHHHHhhCCCCCHhHHHHHHhcc----
Q 013459 141 KVPSLKGFHKTNGELKNVMRLIQR----------------------YEFKNNHNEWIESVKPALDPDISAEIGEML---- 194 (442)
Q Consensus 141 ~~p~~~~~~~~~~~~~~~~~~~~~----------------------~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 194 (442)
|.+... ...+..+.. .+....+..|...+...+.+.++.++..+.
T Consensus 319 --p~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~ 389 (521)
T 3a1k_A 319 --PWHLHA-------FHIWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSETVKLVALTGHHGIT 389 (521)
T ss_dssp --THHHHH-------HHHHHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHT
T ss_pred --CchHhH-------HHHHHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhhhhhhhcCHHHHHHHHhchhhhc
Confidence 221110 011111111 112222334445555678999988886653
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcccHHHHH---HHhhhhccccccccceeeecCc
Q 013459 195 EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQN---RAFSLLSIASVSGCCQVTVPLG 271 (442)
Q Consensus 195 ~~~~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~---~~~~~t~~~n~~g~p~~~~p~~ 271 (442)
..+..+|.++++.|+.+++.|+++|+++|+||+||+|.+||+++........+.. .++.||.++|++|+|+++||+|
T Consensus 390 ~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g 469 (521)
T 3a1k_A 390 TLGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAG 469 (521)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeecc
Confidence 3567799999999999999999999999999999999999998864322222222 2345789999999999999999
Q ss_pred cCCCCceeEEEecccCCcHHHHHHHHHHHH
Q 013459 272 YYDKCPTSVSFIARHGGDRFLLDTVQNMYA 301 (442)
Q Consensus 272 ~~~~lp~g~~~~~~~~~d~~ll~~~~~~~~ 301 (442)
..+|+|+|+|+++++++|..+++++..+++
T Consensus 470 ~~~GlPvGlQlvg~~~~d~~LL~~A~~~E~ 499 (521)
T 3a1k_A 470 LVNGLPVGMMITGRHFDDATVLRVGRAFEK 499 (521)
T ss_dssp EETTEEEEEEEECSTTCHHHHHHHHHHHHH
T ss_pred cCCCCCeeEEEEcCCCCHHHHHHHHHHHHH
Confidence 889999999999999999999999999887
No 6
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=5.2e-55 Score=420.36 Aligned_cols=288 Identities=18% Similarity=0.231 Sum_probs=228.9
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCc--c-cCCCCCcccccccCCHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGI--I-PISTSLDTVGWFARDPKILRHV 77 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~--~-p~~~~~d~~Gp~ar~~~d~~~~ 77 (442)
+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|+ . |.++++|++||||||++|++.+
T Consensus 146 ~pGGSSgGsAAAVAaG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~ 225 (493)
T 3a2q_A 146 SVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAAL 225 (493)
T ss_dssp CCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCcCcHHHHHHHHcCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999998 5 8888999999999999999999
Q ss_pred HHHhhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccc
Q 013459 78 GHVLLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYF 138 (442)
Q Consensus 78 ~~~~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~ 138 (442)
++++.+.+..+ ...+.||++..+........++++.++++++++.|+ |+.++ ++++
T Consensus 226 l~~l~g~d~~d~~~~~~p~~~~~~~~~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~-~~~~---- 300 (493)
T 3a2q_A 226 LDVVSGHRPGDTFCAPTASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVN-DAYP---- 300 (493)
T ss_dssp HHHHBSCCTTCSCCCCCCSSCHHHHTTSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTCEEE-ECCC----
T ss_pred HHHHcCCCCCCcccccCCCcchhhhcccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCCEEE-EeCC----
Confidence 99998754222 134568888766531012356889999999999997 55442 2222
Q ss_pred cccCCchhhhhccchhHHHHHHHHHHHHHHH---hhHHHHH--hhCCCCCHhHHHHHHhcccCCHHHHHHHHHHHHHHHH
Q 013459 139 DSKVPSLKGFHKTNGELKNVMRLIQRYEFKN---NHNEWIE--SVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRS 213 (442)
Q Consensus 139 ~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~ 213 (442)
|.+.. ..+...+..+...|+.. .+..++. .....+.+.++.++..+..++..+|.++++.|..+++
T Consensus 301 ----~~~~~-----~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~ 371 (493)
T 3a2q_A 301 ----EALGD-----RSFLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAG 371 (493)
T ss_dssp ----GGGGC-----CTHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTTSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ----CccCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCccChhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 21110 01223344455556554 3333332 2345689999999999999999999999999999999
Q ss_pred HHHhhc-cCCCEEEeeCCCCCCCCCCCCCcc---------c--HHHHHHHhhhhccccccccceeeecCccC-CCCceeE
Q 013459 214 AISSLL-KDDGILVTPTTAYPPPKLGGKEML---------S--EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSV 280 (442)
Q Consensus 214 ~~~~~~-~~~d~li~Pt~~~~a~~~~~~~~~---------~--~~~~~~~~~~t~~~n~~g~p~~~~p~~~~-~~lp~g~ 280 (442)
.+.++| +++|+||+||++.+||+++..... . ......+..||.++|++|+|+++||+|.. +|+|+|+
T Consensus 372 ~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGv 451 (493)
T 3a2q_A 372 KVERWWEAGWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGV 451 (493)
T ss_dssp HHHHHHHTTCCEEEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEE
T ss_pred HHHHHHhcCCCEEEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhcccccccccCCCceeccCCcCCCCCCeEE
Confidence 999999 999999999999999998754321 1 11122446789999999999999999975 8999999
Q ss_pred EEecccCCcHHHHHHHHHHHHH
Q 013459 281 SFIARHGGDRFLLDTVQNMYAS 302 (442)
Q Consensus 281 ~~~~~~~~d~~ll~~~~~~~~~ 302 (442)
|+++++++|..+++++..+++.
T Consensus 452 Qlvg~~~~d~~lL~~A~~lE~~ 473 (493)
T 3a2q_A 452 QIVAAYGREDLLLQVAAQLEGA 473 (493)
T ss_dssp EEEESTTCHHHHHHHHHHHHHH
T ss_pred EEecCCCChHHHHHHHHHHHHh
Confidence 9999999999999999998875
No 7
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=4.8e-55 Score=416.95 Aligned_cols=284 Identities=23% Similarity=0.348 Sum_probs=222.8
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|.++++|++||||||++|++.++++
T Consensus 143 ~~GGSSgGsaaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~v 222 (478)
T 3h0l_A 143 VPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEV 222 (478)
T ss_dssp CCCSSSHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHCCCCceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc-----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--ccccccccccccccccc
Q 013459 81 LLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSK 141 (442)
Q Consensus 81 ~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~ 141 (442)
+.+.+..+ ...+.||++..+++. ...++++.++++++++.|+ |+.+ ++++
T Consensus 223 l~g~d~~d~~~~~~p~~~~~~~~~~~~~~lrIgv~~~~~~--~~~~p~v~~a~~~a~~~L~~~G~~v-~~v~-------- 291 (478)
T 3h0l_A 223 ISGWDEKDSTSAKVPVPEWSEEVKKEVKGLKIGLPKEFFE--YELQPQVKEAFENFIKELEKEGFEI-KEVS-------- 291 (478)
T ss_dssp HBSCCTTCTTSCCCCCCCHHHHTTCCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEE-EEEC--------
T ss_pred hcCCCcccccccccCccchhhhhccCCCCCEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCCEE-EEeC--------
Confidence 98765332 134578888776543 2356899999999999997 5444 2222
Q ss_pred CCchhhhhccchhHHHHHHHHHHHHHHHhhHHH-------------------HHhhCCCCCHhHHHHHHhccc-----CC
Q 013459 142 VPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEW-------------------IESVKPALDPDISAEIGEMLE-----IS 197 (442)
Q Consensus 142 ~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~-----~~ 197 (442)
+|.+.. ....+..+...|+..++..| .......+++.+..++..+.. ..
T Consensus 292 ~p~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 364 (478)
T 3h0l_A 292 LPHVKY-------SIPTYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYY 364 (478)
T ss_dssp CTTGGG-------HHHHHHHHHHHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTT
T ss_pred CCcHHH-------HHHHHHHHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhh
Confidence 232221 22334444455554433211 112233477778777765532 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccCCCCc
Q 013459 198 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCP 277 (442)
Q Consensus 198 ~~~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp 277 (442)
..+|.++++.|..+++.+.++|+++|+||+||++.+||+++.......... ....||.++|++|+|+++||+|..+|+|
T Consensus 365 ~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlP 443 (478)
T 3h0l_A 365 DAYYLKAQKVRRLITNDFLKAFEEVDVIASPTTPTLPFKFGERLENPIEMY-LSDILTVPANLAGLPAISIPIAWKDGLP 443 (478)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSCCBTTTTSSSHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcccccCChHhhh-hhhhhhhhhHhhCCCeEEEeCCCCCCCC
Confidence 346889999999999999999999999999999999999886533322221 2234899999999999999999888999
Q ss_pred eeEEEecccCCcHHHHHHHHHHHHHH
Q 013459 278 TSVSFIARHGGDRFLLDTVQNMYASL 303 (442)
Q Consensus 278 ~g~~~~~~~~~d~~ll~~~~~~~~~~ 303 (442)
+|+|+++++++|..+++++..+|+..
T Consensus 444 vGlQlvg~~~~D~~LL~~A~~lE~~~ 469 (478)
T 3h0l_A 444 VGGQLIGKHWDETTLLQISYLWEQKF 469 (478)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998753
No 8
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=2.5e-55 Score=420.79 Aligned_cols=282 Identities=22% Similarity=0.341 Sum_probs=218.7
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||++|++.++++
T Consensus 138 ~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~ 217 (476)
T 2gi3_A 138 VPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEI 217 (476)
T ss_dssp CCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc----------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccccccC
Q 013459 81 LLQLPFAA----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKV 142 (442)
Q Consensus 81 ~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~~~~~ 142 (442)
+.+.+..+ ...+.||++..+++. ...++++.++++++++.|+ |+.++ ++++
T Consensus 218 l~g~d~~d~~~~~~p~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~-~~~~-------- 286 (476)
T 2gi3_A 218 ISGRDENDATTVNRKVDFLSEIEEGVSGMKFAVPEEIYE--HDIEEGVSERFEEALKLLERLGAKVE-RVKI-------- 286 (476)
T ss_dssp HBSCBTTBTTCCSCCCCSSTTTTSCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEEE-EECC--------
T ss_pred hhCCCCCCccccCCCcchhhhhhcCCCCCEEEEECcccc--CCCCHHHHHHHHHHHHHHHHCCCEEE-EeCC--------
Confidence 98654322 134578888776542 2356889999999999997 54442 2222
Q ss_pred CchhhhhccchhHHHHHHHHHHHHHHHhhH-----------------HHHH-hhCCCCCHhHHHHHHhcccCCH-----H
Q 013459 143 PSLKGFHKTNGELKNVMRLIQRYEFKNNHN-----------------EWIE-SVKPALDPDISAEIGEMLEISE-----T 199 (442)
Q Consensus 143 p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~ 199 (442)
|.+.. ....+..+...|+...+. +++. .....+.+.+..++..+...+. .
T Consensus 287 p~~~~-------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 359 (476)
T 2gi3_A 287 PHIKY-------SVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEA 359 (476)
T ss_dssp TTGGG-------HHHHHHHHHHHHHHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHH-------HHHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHH
Confidence 22211 112233333344433331 1222 1234577788887776654332 3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCccCCCCcee
Q 013459 200 VIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTS 279 (442)
Q Consensus 200 ~~~~a~~~r~~~~~~~~~~~~~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~~~~lp~g 279 (442)
+|.++++.|..+++.++++|+++|+||+||++.+||+++.. ...... .....||.++|++|+|+++||+|..+|+|+|
T Consensus 360 ~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~-~~~~~~-~~~~~~t~~~nl~G~PaisvP~g~~~GlPvG 437 (476)
T 2gi3_A 360 YFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEI-KDPLTY-YLMDIFTIPANLAGLPAISVPFGFSNNLPVG 437 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSEEEEESCSSCCCBTTTC-CCHHHH-HTTTTTTHHHHHHTCCEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCccccc-ccchhh-hhccceeccccccCCceEEEecccCCCCCeE
Confidence 78889999999999999999999999999999999998762 222111 1224689999999999999999988999999
Q ss_pred EEEecccCCcHHHHHHHHHHHHH
Q 013459 280 VSFIARHGGDRFLLDTVQNMYAS 302 (442)
Q Consensus 280 ~~~~~~~~~d~~ll~~~~~~~~~ 302 (442)
+|+++++++|..+++++..+++.
T Consensus 438 vqlvg~~~~d~~lL~~A~~lE~~ 460 (476)
T 2gi3_A 438 VQVIGRRFADGKVFRIARAIEKN 460 (476)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998875
No 9
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=5.3e-54 Score=413.89 Aligned_cols=276 Identities=25% Similarity=0.321 Sum_probs=215.3
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCCCcccccccCCHHHHHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 80 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~~d~~Gp~ar~~~d~~~~~~~ 80 (442)
+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||++|++.++++
T Consensus 161 ~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~v 240 (503)
T 1m22_A 161 SPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTA 240 (503)
T ss_dssp CCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc---------------------CCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--ccccccccccccc
Q 013459 81 LLQLPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEY 137 (442)
Q Consensus 81 ~~~~~~~~---------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~ 137 (442)
|.+.+..+ ...+.||++..+.+. .++++.++++++++.|+ |+.++ ++++
T Consensus 241 l~g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~~----~~~~v~~a~~~a~~~L~~~G~~v~-~~~~--- 312 (503)
T 1m22_A 241 IAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLL----KYRGMPPLIEQAATELRRAGAVVV-PVEL--- 312 (503)
T ss_dssp HCCCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGGG----GSTTHHHHHHHHHHHHHHTTCEEE-EECC---
T ss_pred HcCCCCCCccccccccccccchhhhccccCCCCCEEEEECcccc----CCHHHHHHHHHHHHHHHHcCCEEE-EeCC---
Confidence 98653221 134578888766541 45788999999999997 55542 2222
Q ss_pred ccccCCchhhhhccchhHHHHHHHHHHHHHHHhhHHHHHh---------------------hCCCCCHhHHHHHHhcccC
Q 013459 138 FDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES---------------------VKPALDPDISAEIGEMLEI 196 (442)
Q Consensus 138 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~ 196 (442)
|.+..+ ...+..+...|+..++..|+.. ....+++.++.++..+..+
T Consensus 313 -----p~~~~~-------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (503)
T 1m22_A 313 -----PNQGAW-------AEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGL 380 (503)
T ss_dssp -----TTTTTT-------HHHHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCCT
T ss_pred -----CcHHHH-------HHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhhhcchhcccccCHHHHHHHHhcCCC
Confidence 222111 1112223333443333333221 1345777888888888888
Q ss_pred CHHHHHHHHHHHHHHHHH--HHhhccC--CCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecCcc
Q 013459 197 SETVIENCKSIRNEMRSA--ISSLLKD--DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 272 (442)
Q Consensus 197 ~~~~~~~a~~~r~~~~~~--~~~~~~~--~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~~~ 272 (442)
+..+|.++.+.|+.+++. ++++|++ +|+||+||+ .++|+++..... + ...||.++|++|+|+++||+|.
T Consensus 381 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~~~---~---~~~~t~~~nl~G~PaisvP~g~ 453 (503)
T 1m22_A 381 ADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSEGDD---F---PGESYSAAAVAGYPSLTVPMGQ 453 (503)
T ss_dssp TCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC---C---C---TTCCHHHHHHHTCCEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCcccccccCc---c---cccccccchhhCCCeEEecccc
Confidence 999999999888888766 9999974 899999999 566766521111 1 1457899999999999999998
Q ss_pred CCCCceeEEEecccCCcHHHHHHHHHHHHHH
Q 013459 273 YDKCPTSVSFIARHGGDRFLLDTVQNMYASL 303 (442)
Q Consensus 273 ~~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~ 303 (442)
.+|+|+|+|+++++++|..+++++..+++..
T Consensus 454 ~~GlPvGvqlvg~~~~d~~lL~~A~~~E~~~ 484 (503)
T 1m22_A 454 IDGLPVGLLFMGTAWSEPKLIEMAYAYEQRT 484 (503)
T ss_dssp ETTEEEEEEEECSTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCChHHHHHHHHHHHHhh
Confidence 8999999999999999999999999998754
No 10
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=2.7e-51 Score=395.62 Aligned_cols=282 Identities=20% Similarity=0.212 Sum_probs=208.7
Q ss_pred CCCCCChHHHHHHhhcCcceeeccCCCCcccccccccccccccCCCCcccCCCcccCCCC----CcccccccCCHHHHHH
Q 013459 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS----LDTVGWFARDPKILRH 76 (442)
Q Consensus 1 ~~GGSSgGsaaava~~~~~~a~GtD~gGSiR~PA~~~g~~g~kpt~g~v~~~g~~p~~~~----~d~~Gp~ar~~~d~~~ 76 (442)
+||||||||||+||+|++++|+|||||||||+||+||||||||||+||||+.|++|.+++ +|++||||||++|++.
T Consensus 207 ~~GGSSgGsaaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~ 286 (573)
T 3ppm_A 207 SPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLAL 286 (573)
T ss_dssp CCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHH
T ss_pred CCCCCCchHHHHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999998875 8999999999999999
Q ss_pred HHHHhhCCC------------cc----cCCCCceEEEcccchhhcCCchhHHHHHHHHHHHHHh--cccccccccccccc
Q 013459 77 VGHVLLQLP------------FA----AQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYF 138 (442)
Q Consensus 77 ~~~~~~~~~------------~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~~ 138 (442)
+++++.+.+ +. ....+.||++..+... ..+++++.++++++++.|+ |+.++ ++++
T Consensus 287 ~l~~l~~~d~~~~d~~~~~~~~~~~~~~~~~~lrigv~~~~~~--~~~~p~v~~a~~~a~~~L~~~G~~v~-~~~~---- 359 (573)
T 3ppm_A 287 CLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNY--TMPSPAMRRALIETKQRLEAAGHTLI-PFLP---- 359 (573)
T ss_dssp HHHHHSSHHHHHHCTTSCCCCCCHHHHTCCCCCEEEECSCCSS--SCCCHHHHHHHHHHHHHHHHTTCEEE-ECCC----
T ss_pred HHHHHhcccccccCCCCCccccchhhcccCCCCEEEEEcccCC--CCCCHHHHHHHHHHHHHHHHCCCEEE-EecC----
Confidence 999986532 11 1245678888755322 2357899999999999997 55552 2222
Q ss_pred cccCCchhhhhccchhHHHHHHHHHHHHHHHhh--------------------------HHHHHhhCCCCCHhHHHHHHh
Q 013459 139 DSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNH--------------------------NEWIESVKPALDPDISAEIGE 192 (442)
Q Consensus 139 ~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~ 192 (442)
|.+..... ..+...+..+....+ ...+......+.|.+...+..
T Consensus 360 ----p~~~~~~~------~~~~~~~~~dg~~~~~~~~~~e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~~~p~~~~~~~~ 429 (573)
T 3ppm_A 360 ----NNIPYALE------VLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNN 429 (573)
T ss_dssp ----TTHHHHHH------THHHHHHTTBTTHHHHGGGTTSCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ----ccHHHHHH------HHHHHHHhhhhHHHHHHHhccCcccHHHHHHhhhccchHHHHHHHHHHhhhcchHHHHHHhh
Confidence 22211100 000000000000000 000011112234555555556
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhcc--CCCEEEeeCCCCCCCCCCCCCcccHHHHHHHhhhhccccccccceeeecC
Q 013459 193 MLEISETVIENCKSIRNEMRSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPL 270 (442)
Q Consensus 193 ~~~~~~~~~~~a~~~r~~~~~~~~~~~~--~~d~li~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~n~~g~p~~~~p~ 270 (442)
+...+..++++++..|..+++.|.+.|+ ++|+||+|+ +.+|++++.... ....+.||.+||++|+|+++||+
T Consensus 430 ~~~~s~~e~~~~~~~r~~~r~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~-----~~~~~~YT~l~NLLDyPA~vVPv 503 (573)
T 3ppm_A 430 MRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPM-LGPALDLNTPGR-----ATGAVSYTMLYNCLDFPAGVVPV 503 (573)
T ss_dssp TSBCBHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEC-CCSCCBTTCGGG-----CGGGGHHHHHHHHTTCCEEEEEE
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhhcCCCEeeCCC-CCCCcCCccccc-----cccccchhhhhHhhCCCeEEEec
Confidence 6677899999999999999999999995 599999999 457887764211 11346799999999999999999
Q ss_pred ccC------------------------------CCCceeEEEecccCCcHHHHHHHHHHHHHHHH
Q 013459 271 GYY------------------------------DKCPTSVSFIARHGGDRFLLDTVQNMYASLQE 305 (442)
Q Consensus 271 ~~~------------------------------~~lp~g~~~~~~~~~d~~ll~~~~~~~~~~~~ 305 (442)
+.. +|+|+|+|+++++++|+.++.++..+++.++.
T Consensus 504 g~v~~~~d~~~~~~~~~~~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~ 568 (573)
T 3ppm_A 504 TTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTP 568 (573)
T ss_dssp EECCHHHHHHHTTCCCSSCSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred ccccccccccccccccccchhhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhc
Confidence 742 69999999999999999999999999886543
No 11
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.87 E-value=5.9e-21 Score=149.84 Aligned_cols=117 Identities=31% Similarity=0.465 Sum_probs=114.3
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
+|+.++.+.++|..+++.|+|++|+..|+++++++|++..+++++|.++.++|++++|+.+|+++++++|++..+|+++|
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
.++..+|++++|++.|+++++++|++.+++..++.+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999998874
No 12
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.81 E-value=2.2e-18 Score=139.07 Aligned_cols=120 Identities=18% Similarity=0.100 Sum_probs=110.6
Q ss_pred ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 397 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 397 (442)
...-+|.+...++.+|..+++.|+|++|+..|+++++++|+++.+|+++|.++..+|+|++|+..|+++++++|+++.+|
T Consensus 28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 45556999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
+++|.+|..+|++++|+++|++++++.|+.+ .......+.
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~-~~~~A~~ll 147 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK-LKIKAQSYL 147 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH-HHHHHHHHH
Confidence 9999999999999999999999999999876 333333333
No 13
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.2e-18 Score=133.65 Aligned_cols=120 Identities=33% Similarity=0.423 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|..+..++.+|..+++.|+|++|+..|+++++++|++..++.++|.++.++|++++|+.+|+++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC------CCChHHHHHHHHHHhhhC
Q 013459 403 AREMLGYYKEAIEDFSYALVLE------PTNKRASLSADRLRKVFM 442 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~~ 442 (442)
++..+|++++|++.|+++++++ |++..++..+..+.+.++
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l~ 126 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQRF 126 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC-
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999 999999999999987653
No 14
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.77 E-value=5.2e-18 Score=137.46 Aligned_cols=119 Identities=11% Similarity=0.001 Sum_probs=112.1
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
..|+....++.+|.+|++.|+|++|++.|+++++++|+++.+++.+|.+|.++|++++|+.+|+++++++|+++.+++++
T Consensus 26 ~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 105 (150)
T 4ga2_A 26 SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKI 105 (150)
T ss_dssp SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 44788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHH-HHHHHhhCCCChHHHHHHHHHHh
Q 013459 401 GTAREMLGYYKEAIED-FSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~-~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
|.+|.++|++++|.+. ++++++++|+++.++..+.++..
T Consensus 106 a~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 106 AELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 9999999999887765 59999999999999988887754
No 15
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.77 E-value=1.7e-17 Score=133.97 Aligned_cols=120 Identities=12% Similarity=0.075 Sum_probs=112.6
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
..|.....++.+|..++..|+|++|+..|++++.++|++..+++.+|.++..+|++++|+..|++++.++|+++.+++++
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 34888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
|.+|..+|++++|+++|+++++++|+++.......++.+.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 135 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSM 135 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHH
Confidence 9999999999999999999999999988876666655543
No 16
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.76 E-value=3.5e-18 Score=136.18 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NAT-----YYSNRAAAYLESGSFLQAEADCTKAINL-- 389 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~~~~~~~~~~~~~~A~~~~~~~l~~-- 389 (442)
..+..+...|..+++.|+|++|+..|+++++++|+ +.. +|.++|.++.++|+|++|+.+|++++++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 46788999999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred -----CCccHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 390 -----DKKNVKAY----LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 390 -----~p~~~~~~----~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
+|++..+| +++|.++..+|++++|+.+|+++++++|++..+...+..+++.
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999998887777777654
No 17
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.75 E-value=2.7e-17 Score=131.98 Aligned_cols=122 Identities=17% Similarity=0.158 Sum_probs=114.2
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
....|.....++.+|..+++.|+|++|+..|++++..+|++..+++.+|.++..+|++++|+.+|++++.++|+++.+++
T Consensus 11 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 11 RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34458889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
++|.+|..+|++++|+++|+++++++|+++.......++...
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 132 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 999999999999999999999999999998877766666544
No 18
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.75 E-value=4.2e-17 Score=128.00 Aligned_cols=115 Identities=30% Similarity=0.414 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-------HH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VK 395 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~ 395 (442)
.+.+.++.++|..+++.|+|++|+.+|+++++++|++..++.++|.+|.++|+|++|+.+|+++++++|++ ..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999998865 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
+++++|.++..+|++++|+++|+++++.+|+ ++....+..++
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~le 126 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKELE 126 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHhC
Confidence 8899999999999999999999999999885 56666666554
No 19
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.74 E-value=6e-17 Score=133.34 Aligned_cols=119 Identities=32% Similarity=0.407 Sum_probs=110.6
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 399 (442)
.+.+..+..++.+|..+++.|+|++|+..|+++++++|++..+++++|.+|.++|++++|+.+|+++++++|++..+|++
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHH--HHHHHHHH
Q 013459 400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRA--SLSADRLR 438 (442)
Q Consensus 400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~~l~~~~ 438 (442)
+|.+|..+|++++|+++|+++++++|++..+ ...+..++
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999884 44444444
No 20
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.73 E-value=6.9e-17 Score=132.68 Aligned_cols=119 Identities=26% Similarity=0.368 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------------------NGNNATYYSNRAAAYLESGSFLQAEADCT 384 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 384 (442)
...+..+...|..+++.|+|++|+..|++++++ +|.+..+++++|.||.++|+|++|+.+|+
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 457889999999999999999999999999999 77778999999999999999999999999
Q ss_pred HHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHhhh
Q 013459 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK-RASLSADRLRKVF 441 (442)
Q Consensus 385 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~ 441 (442)
++++++|.+..+++.+|.+|..+|++++|+..|+++++++|++. .+...+..+++.+
T Consensus 88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 7788888877543
No 21
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.69 E-value=2.7e-16 Score=158.46 Aligned_cols=119 Identities=21% Similarity=0.177 Sum_probs=114.2
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
+|+.+.+++++|.++.+.|++++|+..|+++++++|++..+++++|.++.++|++++|++.|+++++++|++.++++++|
T Consensus 39 ~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg 118 (723)
T 4gyw_A 39 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118 (723)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
.+|.++|++++|+++|+++++++|++..++.+++.+...
T Consensus 119 ~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 119 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence 999999999999999999999999999999999887654
No 22
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.68 E-value=6.1e-16 Score=155.92 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=115.3
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
..|+.+++++++|.++.++|+|++|+++|+++++++|++..+++++|.+|.++|++++|++.|+++++++|++.++|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
|.+|.++|++++|+++|+++++++|++..++.+++.+...
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~ 123 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988654
No 23
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.68 E-value=8e-16 Score=122.22 Aligned_cols=118 Identities=32% Similarity=0.416 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
+..+..++.+|..++..|+|++|+..|+++++++|++..+++++|.++..+|++++|+.+|+++++++|++..+++.+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 55688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHhh
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPT-----NKRASLSADRLRKV 440 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~ 440 (442)
++..+|++++|+..|+++++++|+ +..+...+..+++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 78888887777643
No 24
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.67 E-value=5.3e-16 Score=120.52 Aligned_cols=103 Identities=14% Similarity=0.045 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 406 (442)
..++.+|..+++.|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..+++.+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCChH
Q 013459 407 LGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 407 ~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
+|++++|+..|+++++++|++..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999998754
No 25
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.67 E-value=4.2e-15 Score=114.27 Aligned_cols=115 Identities=32% Similarity=0.437 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 404 (442)
.+..++.+|..++..|+|++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..+++.+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
..+|++++|.+.++++++.+|++..++..++.+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999988864
No 26
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=1.7e-15 Score=130.72 Aligned_cols=120 Identities=18% Similarity=0.076 Sum_probs=112.9
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-----------GSFLQAEADCTKAI 387 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~l 387 (442)
+...|.....++.+|.++.+.|++++|+..|+++++++|++..+++.+|.++..+ |++++|+..|++++
T Consensus 32 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 111 (217)
T 2pl2_A 32 LKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE 111 (217)
T ss_dssp HTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHH
Confidence 4456888999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 388 NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 388 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+++|++..+++++|.++..+|++++|++.|+++++++ +++.++..++.+..
T Consensus 112 ~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 112 RVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYL 162 (217)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 99999998888764
No 27
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.65 E-value=9.6e-15 Score=114.40 Aligned_cols=121 Identities=36% Similarity=0.462 Sum_probs=114.8
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 399 (442)
...+.....++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
+|.++..+|++++|+++|+++++++|++..++..++.+...
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988887654
No 28
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.65 E-value=2e-15 Score=129.46 Aligned_cols=114 Identities=21% Similarity=0.184 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHH----------------HHHHHHHhcCHHHHHHHHHHHHh
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN----------------RAAAYLESGSFLQAEADCTKAIN 388 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------~~~~~~~~~~~~~A~~~~~~~l~ 388 (442)
.++.++..|..++..|+|++|+..|+++++++|++..+++. +|.++.++|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 389 LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 389 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
++|++..+++.+|.++..+|++++|+.+|+++++++|++..++..++.+.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888764
No 29
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.65 E-value=2.6e-15 Score=118.26 Aligned_cols=122 Identities=33% Similarity=0.470 Sum_probs=115.5
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
....+.....++.+|..++..|+|++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|.+..+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 88 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT 88 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence 34457788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
.+|.++..+|++++|+++|+++++++|++..++..++.+...
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887643
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=3.8e-15 Score=128.55 Aligned_cols=116 Identities=16% Similarity=0.083 Sum_probs=112.2
Q ss_pred chHHHHHHHHHHHHHHhc-----------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 013459 322 QKQSAEIAKEKGNQAYKD-----------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 390 (442)
.|.....++.+|.++... |++++|+..|+++++++|++..++..+|.++..+|++++|+..|+++++++
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 478889999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 391 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.+.
T Consensus 149 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 149 -DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195 (217)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888775
No 31
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.3e-15 Score=119.44 Aligned_cols=119 Identities=32% Similarity=0.410 Sum_probs=113.3
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 397 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 397 (442)
..+.....++.+|..++..|+|++|+..|+++++.+|++ ..++..+|.++...+++++|+..|+++++++|++..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 346678899999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+.+|.++..+|++++|+++|+++++++|++..++..+..+.+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988864
No 32
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.65 E-value=3.9e-15 Score=137.42 Aligned_cols=119 Identities=27% Similarity=0.344 Sum_probs=113.7
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKA 386 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~ 386 (442)
.|..+..++.+|..+++.|+|++|+..|+++++++|++ ..+++++|.+|.++|++++|+.+|+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 47788999999999999999999999999999999998 699999999999999999999999999
Q ss_pred HhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 387 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 387 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.+...
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988887653
No 33
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.65 E-value=6.1e-15 Score=125.32 Aligned_cols=120 Identities=29% Similarity=0.344 Sum_probs=113.4
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHhcCHHHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----------------TYYSNRAAAYLESGSFLQAEADCT 384 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~ 384 (442)
+.+..+..+..+|..++..|+|++|+..|++++++.|+++ .++.++|.++.++|++++|+.+|+
T Consensus 33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3456778899999999999999999999999999999887 899999999999999999999999
Q ss_pred HHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 385 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
++++++|.+..+++.+|.+|..+|++++|+++|+++++++|++..++..++.+...
T Consensus 113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888754
No 34
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=6.3e-16 Score=144.63 Aligned_cols=121 Identities=11% Similarity=-0.018 Sum_probs=114.6
Q ss_pred ccchHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQ-WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
.-+|....+|+.+|.++...|+ +++|+..|+++++++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|+
T Consensus 125 ~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~ 204 (382)
T 2h6f_A 125 ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ 204 (382)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHH
Confidence 3448889999999999999997 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
++|.++..+|++++|+++|+++++++|++..++.+++.+...
T Consensus 205 ~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 205 HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888654
No 35
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.64 E-value=5.7e-15 Score=115.89 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRR 400 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~ 400 (442)
..++.+|..++..|+|++|+..|+++++.+|++. .+++.+|.++.+.|++++|+..|+++++.+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578899999999999999999999999999988 799999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
|.++..+|++++|++.|+++++.+|++..+......+..+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999988877777654
No 36
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.64 E-value=5.4e-16 Score=125.49 Aligned_cols=109 Identities=18% Similarity=0.106 Sum_probs=100.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCH
Q 013459 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY 410 (442)
Q Consensus 331 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~ 410 (442)
.+|..+...|++++|+..+++++..+|+++..++.+|.+|++.|+|++|+.+|+++++++|+++.+|+.+|.+|..+|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 36788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 411 KEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 411 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
++|+.+|+++++++|++..++..++.+..
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~ 110 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLC 110 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999988754
No 37
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.63 E-value=2e-15 Score=120.03 Aligned_cols=103 Identities=19% Similarity=0.119 Sum_probs=95.6
Q ss_pred HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459 337 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF----------LQAEADCTKAINLDKKNVKAYLRRGTAREM 406 (442)
Q Consensus 337 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 406 (442)
-+.++|++|++.|+++++++|+++.+|+++|.++..++++ ++|+..|+++++++|++.++|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred cC-----------CHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 407 LG-----------YYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 407 ~~-----------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+| ++++|+++|+++++++|++...+..+..+.+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 85 8999999999999999999999888877654
No 38
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.62 E-value=6.7e-15 Score=141.72 Aligned_cols=120 Identities=29% Similarity=0.437 Sum_probs=110.2
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTK 385 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~ 385 (442)
..+..+..++.+|..+++.|+|++|+..|+++++++|++ ..+++++|.||.++++|++|+.+|++
T Consensus 263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 346788899999999999999999999999999999998 68999999999999999999999999
Q ss_pred HHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 386 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
+++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.+...
T Consensus 343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988887654
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=7e-15 Score=137.51 Aligned_cols=122 Identities=16% Similarity=0.093 Sum_probs=116.6
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCccHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKAY 397 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~ 397 (442)
+.-.|....++..+|..+.+.|++++|+..|+++++++|++..+|+.+|.++..+|+ +++|+.+|+++++++|++..+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 445588999999999999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
+++|.++..+|++++|+.+|+++++++|++..++..++.+...
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~ 212 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 212 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888654
No 40
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=3.7e-14 Score=118.76 Aligned_cols=116 Identities=20% Similarity=0.150 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|.+..+++.+|.++.+.|++++|+..+.+++...|++..++..+|.++...+++++|+..+.+++.++|.+..+++.+|.
T Consensus 36 p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~ 115 (184)
T 3vtx_A 36 PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGL 115 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
++..+|++++|++.|+++++++|++..++..++.+.
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 116 VYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAY 151 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 666666666666666666666666666666655554
No 41
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.61 E-value=2.8e-14 Score=111.82 Aligned_cols=116 Identities=33% Similarity=0.479 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-------HHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VKA 396 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~ 396 (442)
..+..++.+|..++..|+|++|+.+|+++++.+|++..++..+|.++...|++++|+.+|++++.+.|.+ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999998877 889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 397 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
++.+|.++..+|++++|.++|+++++..| +......+..+.+.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 68888888877654
No 42
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.60 E-value=4.7e-14 Score=115.67 Aligned_cols=115 Identities=37% Similarity=0.611 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
...+..++.+|..++..|+|++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|.+..+++.+|.
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
++..+|++++|+++|+++++++|++..++..+..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999888666554
No 43
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.60 E-value=6.6e-14 Score=108.58 Aligned_cols=116 Identities=34% Similarity=0.473 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 404 (442)
....++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+...++.+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
...|++++|.+.|+++++.+|++..++..++.+...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 999999999999999999999999999998887653
No 44
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.59 E-value=5.1e-14 Score=117.89 Aligned_cols=116 Identities=21% Similarity=0.250 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
+.+.+|+++|.++.+.|+|++|+..|+++++++|++..++..+|.+|.++|++++|+..+++++..+|.+..++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 404 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 404 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+...+++++|.+.++++++++|++..++..++.+..
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~ 118 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD 118 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 999999999999999999999999999998887754
No 45
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.59 E-value=3.7e-14 Score=121.44 Aligned_cols=116 Identities=19% Similarity=0.182 Sum_probs=101.9
Q ss_pred chHHHHHHHH----------------HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 013459 322 QKQSAEIAKE----------------KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385 (442)
Q Consensus 322 ~~~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 385 (442)
.|.++..++. +|.++.+.|+|++|+..|+++++++|++..+++.+|.++...|++++|+.+|++
T Consensus 34 ~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 113 (208)
T 3urz_A 34 NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK 113 (208)
T ss_dssp CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3666667777 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCccHHHHHHHHHHHHH-----------------------------------cCCHHHHHHHHHHHHhhCCCChHH
Q 013459 386 AINLDKKNVKAYLRRGTAREM-----------------------------------LGYYKEAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 386 ~l~~~p~~~~~~~~~a~~~~~-----------------------------------~~~~~~A~~~~~~~l~~~p~~~~~ 430 (442)
+++++|++..+++++|.+|.. +|++++|+.+|+++++++|++ .+
T Consensus 114 al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~ 192 (208)
T 3urz_A 114 ILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EA 192 (208)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HH
Confidence 999999999999888877643 346889999999999999975 45
Q ss_pred HHHHHHHH
Q 013459 431 SLSADRLR 438 (442)
Q Consensus 431 ~~~l~~~~ 438 (442)
...+.++.
T Consensus 193 ~~~l~~i~ 200 (208)
T 3urz_A 193 QKTLDKIL 200 (208)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55566554
No 46
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.58 E-value=2e-14 Score=134.19 Aligned_cols=119 Identities=25% Similarity=0.352 Sum_probs=112.2
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK----------------LNGNNATYYSNRAAAYLESGSFLQAEADCTK 385 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 385 (442)
....+..++.+|..+++.|+|++|+..|+++++ ++|.+..+++++|.+|.+++++++|+.+|++
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 345677899999999999999999999999999 7778889999999999999999999999999
Q ss_pred HHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 386 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
+++++|++..+++++|.+|..+|++++|+++|+++++++|++..++..+..+.+.
T Consensus 299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888754
No 47
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.58 E-value=3.5e-14 Score=123.35 Aligned_cols=120 Identities=22% Similarity=0.238 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-------TYYSNRAAAYLESGSFLQAEADCTKAINLDKK-- 392 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-- 392 (442)
.|.....++.+|.++...|++++|+..|+++++++|++. .++..+|.++..+|++++|+..|+++++++|+
T Consensus 72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 151 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKW 151 (228)
T ss_dssp TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHH
T ss_pred CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcc
Confidence 366778888899999999999999999999999998888 66888888898999999999999999999998
Q ss_pred cHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459 393 NVKAYLRRGTAREMLGYY---------------------------KEAIEDFSYALVLEPTNKRASLSADRLRKVF 441 (442)
Q Consensus 393 ~~~~~~~~a~~~~~~~~~---------------------------~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 441 (442)
+..+++++|.+|...|+. ++|+.+|+++++++|++..+...+..++..+
T Consensus 152 ~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~ 227 (228)
T 4i17_A 152 KTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI 227 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 888888899888888887 8888999999999999988888888887543
No 48
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.57 E-value=3.7e-14 Score=123.24 Aligned_cols=115 Identities=26% Similarity=0.224 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH-------HH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV-------KA 396 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-------~~ 396 (442)
.+...++.+|.+++..|+|++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|++. .+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 119 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIY 119 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 44567888999999999999999999999999999999999999999999999999999999999999998 67
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHH
Q 013459 397 YLRRGTAREMLGYYKEAIEDFSYALVLEPT--NKRASLSADRLR 438 (442)
Q Consensus 397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~ 438 (442)
++.+|.++..+|++++|++.|+++++++|+ +..++..++.+.
T Consensus 120 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 120 YLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 999999999999999999999999999999 888888887765
No 49
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.56 E-value=4.9e-14 Score=117.28 Aligned_cols=117 Identities=21% Similarity=0.289 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHhcCH--HHHHHHHHHHHhcCCccHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA-YLESGSF--LQAEADCTKAINLDKKNVKAYLR 399 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~ 399 (442)
|.....++.+|.+++..|+|++|+..|+++++++|++..++..+|.+ +...|++ ++|+..|+++++.+|.+..+++.
T Consensus 41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 120 (177)
T 2e2e_A 41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML 120 (177)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHH
Confidence 56778999999999999999999999999999999999999999999 8899999 99999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+|.++...|++++|+..|+++++++|++......+..+.+
T Consensus 121 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~ 160 (177)
T 2e2e_A 121 LASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM 160 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence 9999999999999999999999999998776666555543
No 50
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.56 E-value=1.5e-14 Score=110.09 Aligned_cols=106 Identities=18% Similarity=0.213 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--cHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRR 400 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~ 400 (442)
|.....++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++.+|. +..+++.+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4556778899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHhhCCCCh
Q 013459 401 GTAREML-GYYKEAIEDFSYALVLEPTNK 428 (442)
Q Consensus 401 a~~~~~~-~~~~~A~~~~~~~l~~~p~~~ 428 (442)
|.++..+ |++++|++++++++...|.+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999 999999999999999999764
No 51
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.55 E-value=8.8e-15 Score=112.88 Aligned_cols=101 Identities=14% Similarity=0.130 Sum_probs=90.7
Q ss_pred hcccHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHH
Q 013459 338 KDKQWLKAISFYTEAIKL---NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 414 (442)
Q Consensus 338 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~ 414 (442)
..|++++|+.+|++++++ +|++..+++++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 68889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHH
Q 013459 415 EDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 415 ~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
..|+++++..|+++........+.
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999999998876655543
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.54 E-value=6e-14 Score=126.09 Aligned_cols=104 Identities=36% Similarity=0.479 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
..+..++.+|..++..|+|++|+..|+++++.+|++..+++++|.+|.++|++++|+.+|+++++++|++..+++++|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC
Q 013459 404 REMLGYYKEAIEDFSYALVLEPTN 427 (442)
Q Consensus 404 ~~~~~~~~~A~~~~~~~l~~~p~~ 427 (442)
|..+|++++|++.|+++++++|++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999976
No 53
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.53 E-value=1.3e-14 Score=134.10 Aligned_cols=120 Identities=27% Similarity=0.353 Sum_probs=97.5
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHhcCHHHHHHH
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-----------------TYYSNRAAAYLESGSFLQAEAD 382 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~~~~~~~~~~~~~~A~~~ 382 (442)
.+.+..+..++.+|..+++.|+|++|+..|++++++.|++. .+++++|.||.++++|++|+.+
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34466788899999999999999999999999999999876 4899999999999999999999
Q ss_pred HHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 383 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 383 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
|+++++++|++..+++++|.+|..+|++++|+++|+++++++|++..++..+..+.+
T Consensus 253 ~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988887743
No 54
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.52 E-value=1.6e-14 Score=116.41 Aligned_cols=100 Identities=10% Similarity=0.059 Sum_probs=92.3
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013459 341 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA 420 (442)
Q Consensus 341 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 420 (442)
++-.+-..++++++++|++..+++.+|.++++.|++++|+..|++++.++|+++.+|+++|.+|..+|++++|+.+|+++
T Consensus 17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 33334466788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHhh
Q 013459 421 LVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 421 l~~~p~~~~~~~~l~~~~~~ 440 (442)
++++|+++.++..++.+...
T Consensus 97 l~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 97 FALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHSSSCCHHHHHHHHHHHH
T ss_pred HhhCCCCcHHHHHHHHHHHH
Confidence 99999999999999988654
No 55
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.51 E-value=1.4e-12 Score=108.51 Aligned_cols=118 Identities=18% Similarity=0.186 Sum_probs=110.1
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.|.....++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|.+..+++.+|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 117 (186)
T 3as5_A 38 DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG 117 (186)
T ss_dssp TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHH
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
.++...|++++|++.++++++..|++..++..++.+..
T Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 118 VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYE 155 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 99999999999999999999999999988888877653
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=4.3e-13 Score=129.79 Aligned_cols=115 Identities=19% Similarity=0.175 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHhc---------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHh
Q 013459 326 AEIAKEKGNQAYKD---------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES--------GSFLQAEADCTKAIN 388 (442)
Q Consensus 326 ~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~~l~ 388 (442)
...+..+|.++... |++++|+..|+++++++|++..+++++|.+|..+ |++++|+..|+++++
T Consensus 170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 58899999999999 9999999999999999999999999999999999 999999999999999
Q ss_pred cCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 389 LDK---KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 389 ~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
++| .++.+|+++|.+|..+|++++|+++|+++++++|++..++..++.+...
T Consensus 250 ~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 304 (474)
T 4abn_A 250 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF 304 (474)
T ss_dssp HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999998888877543
No 57
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.50 E-value=4.9e-14 Score=136.23 Aligned_cols=116 Identities=37% Similarity=0.607 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
+..+..++.+|..+++.|+|++|++.|+++++++|++..+++++|.+|.++|++++|+..|+++++++|++..+++++|.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
+|..+|++++|+++|+++++++|++..++..++.+.
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 118 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 118 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999998888773
No 58
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.4e-12 Score=114.97 Aligned_cols=116 Identities=34% Similarity=0.450 Sum_probs=111.5
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.|.....+..+|..++..|++++|+..|+++++.+|++..++..+|.++.+.|++++|+..|+++++.+|++..+++.+|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 214 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 214 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC------CCChHHHHHHHHH
Q 013459 402 TAREMLGYYKEAIEDFSYALVLE------PTNKRASLSADRL 437 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~ 437 (442)
.++..+|++++|.++|+++++++ |++..++..+.++
T Consensus 215 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 215 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 99999999999999999999999 9999888887765
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=1.2e-12 Score=116.65 Aligned_cols=114 Identities=19% Similarity=0.134 Sum_probs=107.7
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
..|.....++.+|.+++..|++++|+..|+++++++|++..++..+|.++...|++++|+..|+++++++|.+..+++.+
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 117 (275)
T 1xnf_A 38 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 117 (275)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA 434 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 434 (442)
|.++..+|++++|++.|+++++++|++......+
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 151 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL 151 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 9999999999999999999999999998554433
No 60
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.47 E-value=7.5e-13 Score=131.37 Aligned_cols=118 Identities=12% Similarity=-0.008 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.|.....++.+|..+...|+|++|++.|+++++++|++..+++++|.+|..+|++++|++.|+++++++|++..+++++|
T Consensus 19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 98 (568)
T 2vsy_A 19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG 98 (568)
T ss_dssp --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 35566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
.+|..+|++++|+++|+++++++|++..++..++.+..
T Consensus 99 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 136 (568)
T 2vsy_A 99 HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRR 136 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 77777777777777777777777777777776666653
No 61
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.47 E-value=8.4e-14 Score=140.81 Aligned_cols=115 Identities=11% Similarity=-0.028 Sum_probs=81.6
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
+|.+..+++.+|.+++..|+|++|+..|+++++++|++..+++++|.++.++|++++ +.+|+++++++|++..+++++|
T Consensus 463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg 541 (681)
T 2pzi_A 463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLA 541 (681)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence 355666677777777777777777777777777777777777777777777777777 7777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
.++..+|++++|++.|+++++++|++..++..++.+
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~ 577 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVT 577 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence 777777777777777777777777776666666555
No 62
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.46 E-value=2.8e-12 Score=100.62 Aligned_cols=104 Identities=34% Similarity=0.485 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|.....++.+|..+...|++++|+..++++++..|++...+..+|.++...|++++|++.++++++..|.+..+++.+|.
T Consensus 32 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 111 (136)
T 2fo7_A 32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 111 (136)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 44455666667777777777777777777777666666666667777777777777777777777666666666666777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
++...|++++|.+.++++++.+|+
T Consensus 112 ~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 112 AYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHccHHHHHHHHHHHHccCCC
Confidence 777777777777777777666664
No 63
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.45 E-value=2.2e-13 Score=137.73 Aligned_cols=120 Identities=16% Similarity=0.077 Sum_probs=114.1
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 399 (442)
...|.....++.+|..+++.|+|++|+..|+++++++|++..+++++|.++.++|++++|+..|+++++++|++..++++
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 506 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA 506 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 34477888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
+|.++.++|++++ +++|+++++++|++..++.+++.+...
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~ 546 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA 546 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999887643
No 64
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.45 E-value=1.6e-12 Score=111.31 Aligned_cols=105 Identities=17% Similarity=0.130 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH----------
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV---------- 394 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---------- 394 (442)
....++.+|.+++..|+|++|+..|+++++++|++..+++++|.++..+|++++|+..|++++++.|.+.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 4679999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459 395 ------KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 395 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
.+++++|.++..+|++++|+++|+++++++|++..
T Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 99999999999999999999999999999997654
No 65
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.44 E-value=2.1e-12 Score=114.64 Aligned_cols=116 Identities=17% Similarity=0.116 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHH--------hcCHHHHHHHHHHHHhcCC
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLE--------SGSFLQAEADCTKAINLDK 391 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~--------~~~~~~A~~~~~~~l~~~p 391 (442)
+....+++.+|.++++.|+|++|+..|+++++.+|++ ..+++.+|.++.. .|++++|+..|+++++.+|
T Consensus 49 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 49 EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 3348899999999999999999999999999998855 5789999999999 9999999999999999999
Q ss_pred ccHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHH
Q 013459 392 KNVKAY-----------------LRRGTAREMLGYYKEAIEDFSYALVLEPTN---KRASLSADRLR 438 (442)
Q Consensus 392 ~~~~~~-----------------~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~ 438 (442)
++..+. +.+|.+|...|++++|+..|+++++..|++ ..++..++.+.
T Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~ 195 (261)
T 3qky_A 129 NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAY 195 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 886655 889999999999999999999999999985 44666665544
No 66
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.44 E-value=1.5e-12 Score=117.39 Aligned_cols=117 Identities=13% Similarity=0.119 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHH-----------------------
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE----------------------- 380 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~----------------------- 380 (442)
.....++.+|..+...|++++|+..|+++++.+|++..+++.+|.++.+.|++++|+
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 445566777777777777777777777777777777777777777777777766665
Q ss_pred -----------HHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHhh
Q 013459 381 -----------ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN--KRASLSADRLRKV 440 (442)
Q Consensus 381 -----------~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~ 440 (442)
..|++++.++|++..+++++|.++...|++++|++.|+++++.+|++ ..++..+..+...
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 44555677789999999999999999999999999999999999998 7788888777654
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=2e-12 Score=125.05 Aligned_cols=117 Identities=13% Similarity=0.110 Sum_probs=111.9
Q ss_pred chHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQW-LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
.+..+..++.+|..++..|+| ++|+.+|+++++++|++..+++.+|.+|.++|++++|+.+|+++++++|+ ..+++++
T Consensus 98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~l 176 (474)
T 4abn_A 98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNL 176 (474)
T ss_dssp CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHH
T ss_pred CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHH
Confidence 356789999999999999999 99999999999999999999999999999999999999999999999998 7999999
Q ss_pred HHHHHHc---------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 401 GTAREML---------GYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 401 a~~~~~~---------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
|.++..+ |++++|++.|+++++++|++..++..++.+..
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 224 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL 224 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999999888764
No 68
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.43 E-value=4e-12 Score=111.00 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|.....+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..+++.+|.
T Consensus 88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 167 (243)
T 2q7f_A 88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGM 167 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 44556666667777777777777777777777777666666777777777777777777777777766666666666777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
++...|++++|++.|+++++.+|++..++..++.+.
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 777777777777777777776666666666655554
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.43 E-value=2.3e-12 Score=114.34 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=104.3
Q ss_pred chHHHHHHHHHHHHHHh--------cccHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHhcCH
Q 013459 322 QKQSAEIAKEKGNQAYK--------DKQWLKAISFYTEAIKLNGNNATYY-----------------SNRAAAYLESGSF 376 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~~~~~~~~~~~~ 376 (442)
.+....+++.+|.+++. .|++++|+..|+++++.+|++..+. +.+|.+|.+.|++
T Consensus 85 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 164 (261)
T 3qky_A 85 DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELY 164 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 35667889999999999 9999999999999999999986665 8889999999999
Q ss_pred HHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 377 LQAEADCTKAINLDKK---NVKAYLRRGTAREML----------GYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 377 ~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~----------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
++|+..|+++++.+|+ ..++++.+|.+|..+ |++++|++.|+++++.+|+++.+......+.
T Consensus 165 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 239 (261)
T 3qky_A 165 EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT 239 (261)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 9999999999999998 567999999999987 9999999999999999999976655444443
No 70
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.43 E-value=1.8e-12 Score=122.08 Aligned_cols=119 Identities=19% Similarity=0.125 Sum_probs=110.8
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.|.....+..+|..+.+.|++++|+..|+++++++|++..++..++.++.+.|++++|+..|+++++++|++..+++.+|
T Consensus 267 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 346 (388)
T 1w3b_A 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346 (388)
T ss_dssp CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 36667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
.++.+.|++++|++.|+++++++|++..++..++.+...
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999887654
No 71
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.43 E-value=8e-13 Score=103.16 Aligned_cols=90 Identities=17% Similarity=0.223 Sum_probs=83.6
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459 351 EAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 351 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 430 (442)
++..++|+....+.++|..+++.|+|++|+..|+++++++|.+..+|+++|.+|..+|++++|+..|+++++++|++..+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 013459 431 SLSADRLRKV 440 (442)
Q Consensus 431 ~~~l~~~~~~ 440 (442)
+..++.+...
T Consensus 84 ~~~lg~~~~~ 93 (126)
T 4gco_A 84 YIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888643
No 72
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.42 E-value=5.3e-12 Score=110.23 Aligned_cols=117 Identities=21% Similarity=0.199 Sum_probs=111.7
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.|.....+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+..+++.+|
T Consensus 53 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 132 (243)
T 2q7f_A 53 NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG 132 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
.++...|++++|++.++++++..|++..++..++.+.
T Consensus 133 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 133 TVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999888887765
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=4.3e-12 Score=105.61 Aligned_cols=117 Identities=13% Similarity=0.104 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
......++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..+++.+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
++...|++++|.+.++++++.+|++..++..++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 121 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD 121 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH
Confidence 9999999999999999999999999998888877653
No 74
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.41 E-value=4.5e-12 Score=111.64 Aligned_cols=115 Identities=21% Similarity=0.248 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh--------------------------hCCCCHHHHHHHHHHHHHhcCHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK--------------------------LNGNNATYYSNRAAAYLESGSFLQ 378 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~~~~~~~~~~~~~~ 378 (442)
....++.+|.++...|++++|+..|+++++ .+|++..++..+|.++...|++++
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 378999999999999999999999999999 666778899999999999999999
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 379 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 379 A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
|+..|+++++.+|.+..+++.+|.++...|++++|+++|+++++.+|++..++..++.+..
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 218 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 218 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988887754
No 75
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.40 E-value=5.2e-12 Score=108.18 Aligned_cols=112 Identities=23% Similarity=0.242 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
.....++.+|..++..|+|++|+..|++++ +| +..+++++|.++...|++++|+..|+++++++|.+..+++++|.+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 455678999999999999999999999996 33 788999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCh----------------HHHHHHHHHH
Q 013459 404 REMLGYYKEAIEDFSYALVLEPTNK----------------RASLSADRLR 438 (442)
Q Consensus 404 ~~~~~~~~~A~~~~~~~l~~~p~~~----------------~~~~~l~~~~ 438 (442)
+..+|++++|+++|++++++.|++. .++..++.+.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMY 131 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHH
Confidence 9999999999999999999999877 7777777664
No 76
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.40 E-value=3.4e-12 Score=120.12 Aligned_cols=115 Identities=23% Similarity=0.173 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|..+..++.+|..+.+.|++++|+..|+++++++|++..++..+|.++.+.|++++|+..|+++++++|++..++..+|.
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 143 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN 143 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 55566666667777777777777777777666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
++..+|++++|++.|+++++.+|++..++..++.+
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 178 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 66666666666666666666666665555555443
No 77
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.40 E-value=5.7e-12 Score=109.15 Aligned_cols=116 Identities=13% Similarity=0.020 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHH------------------hcCHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT---YYSNRAAAYLE------------------SGSFLQAEA 381 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~------------------~~~~~~A~~ 381 (442)
+....+++.+|.++++.|+|++|+..|+++++.+|++.. +++.+|.++.. .|++++|+.
T Consensus 38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 117 (225)
T 2yhc_A 38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS 117 (225)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence 445678999999999999999999999999999999864 78999999887 578999999
Q ss_pred HHHHHHhcCCccHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHH
Q 013459 382 DCTKAINLDKKNVKAY-----------------LRRGTAREMLGYYKEAIEDFSYALVLEPTNK---RASLSADRLR 438 (442)
Q Consensus 382 ~~~~~l~~~p~~~~~~-----------------~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~ 438 (442)
.|+++++.+|++..++ +.+|.+|.+.|++++|+..|+++++..|+++ +++..++.+.
T Consensus 118 ~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~ 194 (225)
T 2yhc_A 118 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAY 194 (225)
T ss_dssp HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHH
Confidence 9999999999986544 6789999999999999999999999999987 4555555554
No 78
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=7.3e-12 Score=107.83 Aligned_cols=119 Identities=15% Similarity=0.032 Sum_probs=109.7
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHh--cCCccHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-GSFLQAEADCTKAIN--LDKKNVKAY 397 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~--~~p~~~~~~ 397 (442)
..|.....+..+|.++...|++++|+..|+++++.+|++..++..+|.++... |++++|+..++++++ .+|.+..++
T Consensus 37 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 116 (225)
T 2vq2_A 37 SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIAN 116 (225)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHH
T ss_pred hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHH
Confidence 34667889999999999999999999999999999999999999999999999 999999999999999 667778999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+.+|.++...|++++|++.|+++++..|++..++..++.+..
T Consensus 117 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKM 158 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 999999999999999999999999999999999888887753
No 79
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.9e-13 Score=103.95 Aligned_cols=95 Identities=24% Similarity=0.350 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------VKAYL 398 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~ 398 (442)
++..++.+|..++..|+|++|+..|+++++++|++..+++++|.++.++|++++|+..|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 013459 399 RRGTAREMLGYYKEAIEDFSY 419 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~ 419 (442)
.+|.++..+|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999988887766554
No 80
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=7.2e-12 Score=107.86 Aligned_cols=118 Identities=15% Similarity=0.108 Sum_probs=108.3
Q ss_pred chHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
.|.....+..+|.++... |++++|+..|+++++ .+|.+..++..+|.++...|++++|+..|+++++.+|.+..+++
T Consensus 72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 151 (225)
T 2vq2_A 72 KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK 151 (225)
T ss_dssp CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH
Confidence 466778899999999999 999999999999999 66777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHh
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVLEP-TNKRASLSADRLRK 439 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~ 439 (442)
.+|.++...|++++|.+.++++++.+| ++...+..+..+..
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAK 193 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999 99888876666543
No 81
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.40 E-value=3.1e-12 Score=110.82 Aligned_cols=111 Identities=16% Similarity=0.150 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH---HHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK---AYL 398 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~ 398 (442)
.+..++.+|..+++.|+|++|+..|+++++.+|+++ .+++.+|.++.++|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 356789999999999999999999999999998864 78999999999999999999999999999998864 899
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459 399 RRGTAREM------------------LGYYKEAIEDFSYALVLEPTNKRASLSAD 435 (442)
Q Consensus 399 ~~a~~~~~------------------~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 435 (442)
.+|.++.. .|++++|+..|+++++.+|++..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~ 137 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATK 137 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHH
Confidence 99999986 57899999999999999999987765443
No 82
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.40 E-value=2.3e-12 Score=120.26 Aligned_cols=115 Identities=16% Similarity=0.206 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 404 (442)
.+..++.+|..+...|++++|+..|+++++++|++..++..+|.++.+.|++++|+..|+++++++|++..+++++|.+|
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCC------------hHHHHHHHHHHh
Q 013459 405 EMLGYYKEAIEDFSYALVLEPTN------------KRASLSADRLRK 439 (442)
Q Consensus 405 ~~~~~~~~A~~~~~~~l~~~p~~------------~~~~~~l~~~~~ 439 (442)
..+|++++|+.+|+++++++|++ ..++..++.+..
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH
Confidence 99999999999999999999883 566777776654
No 83
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.40 E-value=9.8e-12 Score=112.11 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=80.9
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHH-
Q 013459 334 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE- 412 (442)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~- 412 (442)
..+...|++++|+..|+++++.+|+++.+++++|.++.++|++++|+..|+++++++|+++++++++|.++..+|++++
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 3334557888888888888888888888888888888888888888888888888888888888888888888888765
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHH
Q 013459 413 AIEDFSYALVLEPTNKRASLSADR 436 (442)
Q Consensus 413 A~~~~~~~l~~~p~~~~~~~~l~~ 436 (442)
+.++++++++++|+++.+.....+
T Consensus 254 a~~~~~~~~~~~P~~~~~~d~~~~ 277 (291)
T 3mkr_A 254 TNRYLSQLKDAHRSHPFIKEYRAK 277 (291)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHH
Confidence 467778888888888877655443
No 84
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.40 E-value=4.4e-12 Score=118.20 Aligned_cols=116 Identities=17% Similarity=0.195 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 404 (442)
....+..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..|+++++++|++..+++.+|.+|
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCC-----------hHHHHHHHHHHhh
Q 013459 405 EMLGYYKEAIEDFSYALVLEPTN-----------KRASLSADRLRKV 440 (442)
Q Consensus 405 ~~~~~~~~A~~~~~~~l~~~p~~-----------~~~~~~l~~~~~~ 440 (442)
..+|++++|+.+|++++++.|++ ..++..++.+...
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 342 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence 99999999999999999999988 7888888777643
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.39 E-value=5.6e-12 Score=98.83 Aligned_cols=112 Identities=30% Similarity=0.425 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 406 (442)
..++.+|..+...|++++|+..|+++++.+|++...+..++.++...|++++|+..+++++..+|.+...++.+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 407 LGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 407 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
.|++++|++.++++++..|++...+..++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 113 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 99999999999999999999998888877664
No 86
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.39 E-value=9.4e-12 Score=109.46 Aligned_cols=116 Identities=19% Similarity=0.154 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
|.....+..+|..+...|++++|+..|+++++ ..|.+..++..+|.++...|++++|+..|+++++.+|.+..+++.+
T Consensus 102 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 181 (252)
T 2ho1_A 102 SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEM 181 (252)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 44455666666666666666666666666666 5555566666666666666666666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
|.++...|++++|...++++++..|++...+..+..+.
T Consensus 182 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA 219 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 66666666666666666666666666666655555443
No 87
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.39 E-value=1.6e-11 Score=107.94 Aligned_cols=114 Identities=11% Similarity=0.033 Sum_probs=108.7
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
..|.....+..+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..++..+
T Consensus 136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 215 (252)
T 2ho1_A 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLG 215 (252)
T ss_dssp TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 45778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA 434 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 434 (442)
+.++...|++++|.++++++++++|++..+...+
T Consensus 216 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 216 IRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999999999887654
No 88
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.39 E-value=5.8e-12 Score=112.12 Aligned_cols=115 Identities=21% Similarity=0.165 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 404 (442)
....+..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|.+..+++.+|...
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 152 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY 152 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999444
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
...+++++|++.|+++++++|++..++..++.+..
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 187 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELKPNIYIGYLWRARANA 187 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 45569999999999999999999988888877654
No 89
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.39 E-value=1.2e-11 Score=111.60 Aligned_cols=117 Identities=9% Similarity=-0.074 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHH--HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA--AAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~--~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
|.+...+..+|.++.+.|++++|+..|+++++.+|++.......+ .++...|++++|+..|+++++.+|+++.+++++
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l 206 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ 206 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 567789999999999999999999999999999999864444333 333345899999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
|.++.++|++++|++.|+++++++|+++.++.++..+..
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~ 245 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999988886653
No 90
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.38 E-value=8.9e-13 Score=106.10 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=89.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 346 ISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 346 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
-..|+++++++|++..+++.+|.++...|++++|+..|++++.++|.++.+|+++|.++..+|++++|+++|+++++++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHh
Q 013459 426 TNKRASLSADRLRK 439 (442)
Q Consensus 426 ~~~~~~~~l~~~~~ 439 (442)
+++.++..++.+..
T Consensus 87 ~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 87 XEPRFPFHAAECLL 100 (148)
T ss_dssp TCTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHH
Confidence 99999999988764
No 91
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.38 E-value=4.8e-12 Score=115.85 Aligned_cols=118 Identities=16% Similarity=0.235 Sum_probs=110.8
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 392 (442)
.|.....++.+|..+...|++++|+..|+++++.. |....++..+|.++.+.|++++|+..|+++++++|+
T Consensus 189 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 36678899999999999999999999999999986 667789999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 393 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+..+++.+|.++..+|++++|.++|+++++++|++..++..++.+..
T Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 269 NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988763
No 92
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.38 E-value=5.6e-12 Score=117.57 Aligned_cols=113 Identities=17% Similarity=0.204 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 404 (442)
..+..+|..+...|++++|+.+|+++++++|+ ++.++..+|.++...|++++|+..|+++++++|++..+|+.+|.+|
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 257 (365)
T 4eqf_A 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATL 257 (365)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34455699999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
..+|++++|++.|+++++++|++..++..++.+..
T Consensus 258 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 258 ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999888764
No 93
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.37 E-value=6.4e-12 Score=96.24 Aligned_cols=85 Identities=14% Similarity=0.091 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013459 343 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 422 (442)
Q Consensus 343 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 422 (442)
++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|.+..+++.+|.+|..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCC
Q 013459 423 LEPTN 427 (442)
Q Consensus 423 ~~p~~ 427 (442)
+.|++
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 98853
No 94
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.37 E-value=8.6e-12 Score=123.73 Aligned_cols=110 Identities=13% Similarity=-0.001 Sum_probs=105.1
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.|.....++.+|.++...|++++|++.|+++++++|++..+++++|.++.++|++++|++.|+++++++|++..+++++|
T Consensus 53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 132 (568)
T 2vsy_A 53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132 (568)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 47778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc---CCHHHHHHHHHHHHhhCCCChHHH
Q 013459 402 TAREML---GYYKEAIEDFSYALVLEPTNKRAS 431 (442)
Q Consensus 402 ~~~~~~---~~~~~A~~~~~~~l~~~p~~~~~~ 431 (442)
.++..+ |++++|.+.|+++++.+|++...+
T Consensus 133 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 165 (568)
T 2vsy_A 133 NWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPF 165 (568)
T ss_dssp HHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHH
T ss_pred HHHHHhhccccHHHHHHHHHHHHhcCCcccChH
Confidence 999999 999999999999999999875544
No 95
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.36 E-value=3.1e-11 Score=111.64 Aligned_cols=113 Identities=18% Similarity=0.269 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459 329 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT----YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404 (442)
Q Consensus 329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 404 (442)
....|..+++.|++++|+..|+++++..|++.. ++..+|.++.+.|++++|+..|+++++.+|++..+++.+|.++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345699999999999999999999999999874 4667999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459 405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 441 (442)
Q Consensus 405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 441 (442)
...|++++|.++|+++++++|++..++..+..+...+
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887653
No 96
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.36 E-value=1.1e-11 Score=114.65 Aligned_cols=112 Identities=29% Similarity=0.293 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 404 (442)
+++.++.+|..++..|+|++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..+++.+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCC---CChHHHHHHHH
Q 013459 405 EMLGYYKEAIEDFSYALVLEP---TNKRASLSADR 436 (442)
Q Consensus 405 ~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~l~~ 436 (442)
...|++++|++.|+++++.+| ++..++..+..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK 116 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHH
Confidence 999999999999999999999 88888877643
No 97
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.36 E-value=1.3e-11 Score=118.50 Aligned_cols=118 Identities=27% Similarity=0.288 Sum_probs=109.1
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
...+|.++..++.+|..+++.|+|++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..+++
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHH
Q 013459 399 RRGTAREMLGYYKEAIEDFSYALVLEPTNK---RASLSADR 436 (442)
Q Consensus 399 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~ 436 (442)
.+|.+|..+|++++|++.|+++++++|++. .++..+..
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 139 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999999999999999998 77665543
No 98
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.36 E-value=1.3e-11 Score=112.80 Aligned_cols=117 Identities=12% Similarity=0.124 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|.....+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..+++.+|.
T Consensus 169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAV 248 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC------------ChHHHHHHHHHHh
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPT------------NKRASLSADRLRK 439 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~l~~~~~ 439 (442)
++..+|++++|.+.|+++++++|+ +..++..++.+..
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence 999999999999999999999999 7788887777654
No 99
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.35 E-value=6.8e-12 Score=111.68 Aligned_cols=117 Identities=13% Similarity=0.069 Sum_probs=104.8
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA 396 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 396 (442)
..|.....++.+|.+++..|+|++|+..|+++++ .|++ ..++..+|.++...|++++|+..|+++++++|.+..+
T Consensus 32 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 110 (272)
T 3u4t_A 32 KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM 110 (272)
T ss_dssp TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH
T ss_pred hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHH
Confidence 3466677899999999999999999999999999 4443 3458999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH-HHH
Q 013459 397 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD-RLR 438 (442)
Q Consensus 397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~-~~~ 438 (442)
+..+|.++..+|++++|+++|+++++++|++..++..++ .+.
T Consensus 111 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 111 YGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888 543
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.35 E-value=6.4e-12 Score=104.31 Aligned_cols=120 Identities=12% Similarity=0.028 Sum_probs=103.2
Q ss_pred cccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL-ESGSFLQAEADCTKAINLDKKNVKAY 397 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~ 397 (442)
....|.+..+++.+|.++...|++++|+..|+++++.+| ++..+..++.+.. ..++..+|+..++++++++|++..++
T Consensus 33 l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~ 111 (176)
T 2r5s_A 33 SDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELA 111 (176)
T ss_dssp CHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHH
Confidence 345588899999999999999999999999999999999 8877666665433 33445568999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHh
Q 013459 398 LRRGTAREMLGYYKEAIEDFSYALVLEPTN--KRASLSADRLRK 439 (442)
Q Consensus 398 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~ 439 (442)
+.+|.++...|++++|+..|+++++.+|+. ..++..++.+..
T Consensus 112 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 112 CELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 999999999999999999999999999986 457877777654
No 101
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.35 E-value=1.6e-11 Score=112.33 Aligned_cols=116 Identities=16% Similarity=0.024 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
|.....++.+|..+...| ++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++..|++..+++.+|
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 166 (330)
T 3hym_B 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIG 166 (330)
T ss_dssp TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 556678888888888888 8888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
.++...|++++|++.++++++.+|++..++..++.+.
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 203 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVA 203 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 8888888888888888888888888888877777664
No 102
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.34 E-value=1.7e-11 Score=89.25 Aligned_cols=86 Identities=34% Similarity=0.466 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
+.....++.+|..++..++|++|+..|+++++.+|++..+++.+|.++.+.|++++|+..|+++++++|++..++.++|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45667888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcC
Q 013459 403 AREMLG 408 (442)
Q Consensus 403 ~~~~~~ 408 (442)
++..+|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 877654
No 103
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.33 E-value=4.3e-12 Score=105.37 Aligned_cols=105 Identities=14% Similarity=0.085 Sum_probs=94.9
Q ss_pred HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH-HHHcCCH--H
Q 013459 335 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA-REMLGYY--K 411 (442)
Q Consensus 335 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~-~~~~~~~--~ 411 (442)
.+...|+|++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..+++.+|.+ +...|++ +
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 356789999999999999999999999999999999999999999999999999999999999999999 8899999 9
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 412 EAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 412 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+|++.|+++++.+|++..++..++.+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~ 126 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAF 126 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999999999999988887753
No 104
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.31 E-value=5.4e-12 Score=100.71 Aligned_cols=93 Identities=17% Similarity=0.264 Sum_probs=85.7
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 347 SFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 347 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
..|+++++++|++...++.+|.++++.|++++|+..|++++.++|++..+|+.+|.++..+|++++|+++|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHh
Q 013459 427 NKRASLSADRLRK 439 (442)
Q Consensus 427 ~~~~~~~l~~~~~ 439 (442)
++.++..++.+..
T Consensus 85 ~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 85 EPRFPFHAAECHL 97 (142)
T ss_dssp CTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 9999998888764
No 105
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.29 E-value=6e-11 Score=113.76 Aligned_cols=110 Identities=18% Similarity=0.270 Sum_probs=103.2
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 405 (442)
Q Consensus 330 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 405 (442)
..+|..+...|++++|+..|++++++.|++. ..+..+|.++.+.|++++|+..++++++++|++..+|+.+|.++.
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4449999999999999999999999999985 478899999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 406 MLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 406 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
..|++++|+..|+++++++|++..++..++.+..
T Consensus 341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR 374 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999887654
No 106
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.29 E-value=2.9e-11 Score=111.39 Aligned_cols=100 Identities=19% Similarity=0.123 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
.....++++|.++++.|+|++|+..|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.+
T Consensus 194 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHH-HHHHHHHHhh
Q 013459 404 REMLGYYKEA-IEDFSYALVL 423 (442)
Q Consensus 404 ~~~~~~~~~A-~~~~~~~l~~ 423 (442)
+..++++++| .+.|++++..
T Consensus 274 ~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 4567777654
No 107
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.28 E-value=1.2e-10 Score=108.51 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=83.7
Q ss_pred ccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 013459 340 KQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417 (442)
Q Consensus 340 ~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~ 417 (442)
|++++|+..|+++++.+|+ +..++..+|.++...|++++|+..|+++++++|++..+++.+|.++...|++++|++.|
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444444444445555566 67888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHh
Q 013459 418 SYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 418 ~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+++++++|++..++..++.+..
T Consensus 275 ~~al~~~~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 275 RRALELQPGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999998888887754
No 108
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.28 E-value=7.6e-11 Score=104.90 Aligned_cols=109 Identities=17% Similarity=0.075 Sum_probs=96.8
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH-------
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV------- 394 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~------- 394 (442)
.|.....+..+|.++...|++++|+.+|+++++++|++..++..+|.++...|++++|+..|+++++++|++.
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (275)
T 1xnf_A 73 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152 (275)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 3567788999999999999999999999999999999999999999999999999999999999998887764
Q ss_pred ---------------------------------------------------------------HHHHHHHHHHHHcCCHH
Q 013459 395 ---------------------------------------------------------------KAYLRRGTAREMLGYYK 411 (442)
Q Consensus 395 ---------------------------------------------------------------~~~~~~a~~~~~~~~~~ 411 (442)
.+++.+|.++..+|+++
T Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 232 (275)
T 1xnf_A 153 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 232 (275)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHH
Confidence 56777888899999999
Q ss_pred HHHHHHHHHHhhCCCChHH
Q 013459 412 EAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 412 ~A~~~~~~~l~~~p~~~~~ 430 (442)
+|..+|+++++++|++...
T Consensus 233 ~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 233 SATALFKLAVANNVHNFVE 251 (275)
T ss_dssp HHHHHHHHHHTTCCTTCHH
T ss_pred HHHHHHHHHHhCCchhHHH
Confidence 9999999999999876653
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.28 E-value=5.8e-12 Score=104.56 Aligned_cols=116 Identities=9% Similarity=-0.027 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
+...+.++.+|..++..|++++|+..|+++++.+|++..+++.+|.++.+.|++++|+..|++++..+| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 344556889999999999999999999999999999999999999999999999999999999999999 8777666665
Q ss_pred HH-HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 403 AR-EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 403 ~~-~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+. ...++..+|++.|+++++++|++..++..++.+..
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~ 119 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYN 119 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 53 33344456899999999999999999999888754
No 110
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.27 E-value=5.8e-11 Score=107.18 Aligned_cols=107 Identities=13% Similarity=0.094 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCcc--
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKN-- 393 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~-- 393 (442)
+..+..+.++|.++...|+|++|+.+|++++++.++. ..++.++|.+|... |++++|+.+|++++++.|.+
T Consensus 74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 4567899999999999999999999999999997654 46889999999996 99999999999999998754
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459 394 ----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 394 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
..++.++|.++..+|++++|+.+|++++++.|++..
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 467899999999999999999999999999998764
No 111
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.27 E-value=8.4e-12 Score=92.66 Aligned_cols=92 Identities=12% Similarity=0.106 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Q 013459 329 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT-YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 407 (442)
Q Consensus 329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 407 (442)
.+..|..++..|+|++|+..|+++++.+|++.. +++.+|.++..+|++++|+..|+++++++|++..++++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 357899999999999999999999999999999 99999999999999999999999999999999988754
Q ss_pred CCHHHHHHHHHHHHhhCCCCh
Q 013459 408 GYYKEAIEDFSYALVLEPTNK 428 (442)
Q Consensus 408 ~~~~~A~~~~~~~l~~~p~~~ 428 (442)
+.+.++...|+++...+|++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 567788888888888887764
No 112
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.26 E-value=6.7e-11 Score=117.85 Aligned_cols=116 Identities=18% Similarity=0.149 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh------CCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 395 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 395 (442)
|.+...+..++..+.+.|++++|++.|+++++. +|++ ..++..++.++.+.|++++|+..|+++++++|++..
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 445667888888888888888888888888877 4544 677888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
+++.++.+|...|++++|.+.|+++++++|++..++..++.+.
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 8888888888888888888888888888888888888777654
No 113
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.26 E-value=7e-11 Score=96.48 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=94.0
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.|.....++.+|.++...|+|++|+..|+++++.+|++..+++.+|.++..+|++++|+.+|+++++++|.+..++..++
T Consensus 43 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 122 (166)
T 1a17_A 43 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 122 (166)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999998885555
Q ss_pred HH--HHHcCCHHHHHHHHHHHHhhC
Q 013459 402 TA--REMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 402 ~~--~~~~~~~~~A~~~~~~~l~~~ 424 (442)
.+ +...|++++|++.+++...+.
T Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 123 ECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccchHHHh
Confidence 55 888999999999999876553
No 114
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.24 E-value=1e-10 Score=114.04 Aligned_cols=107 Identities=32% Similarity=0.472 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
...+..++.+|..+++.|+|++|+..|+++++.+| +..++..+|.++.+.|++++|+..|+++++++|++..+++.+|.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 45788999999999999999999999999999999 68999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 430 (442)
++..+|++++|++.|+++++.+|.+...
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 109 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDAS 109 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGG
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccch
Confidence 9999999999999999999999976543
No 115
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.23 E-value=3.3e-11 Score=89.65 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 356 NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 356 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
+|+++.+++.+|.++.+.|++++|+..|+++++++|++..+|+.+|.+|..+|++++|++.|++++++.|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 4555556666666666666666666666666666666666666666666666666666666666665544
No 116
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=1.2e-10 Score=103.84 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=104.5
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINL---- 389 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---- 389 (442)
.+.....+..+|.+++..|+|++|+..|++++++. |....++..+|.++...|++++|+..|++++.+
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999883 555778999999999999999999999999988
Q ss_pred ----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHH
Q 013459 390 ----DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL--------EPTNKRASLSADRLR 438 (442)
Q Consensus 390 ----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~ 438 (442)
+|....+++++|.++..+|++++|+.+|++++++ .|....++..++.+.
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 179 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY 179 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 4777889999999999999999999999999998 666666777776664
No 117
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.22 E-value=1.7e-10 Score=104.89 Aligned_cols=111 Identities=10% Similarity=-0.117 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 406 (442)
+|..++..+.+.|++++|...|+++++..|.+..++...+....+ .|++++|++.|+++++.+|++..+|..++..+..
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 677777777777777777777777777777766666655555433 5777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHhh---CC-CChHHHHHHHHHH
Q 013459 407 LGYYKEAIEDFSYALVL---EP-TNKRASLSADRLR 438 (442)
Q Consensus 407 ~~~~~~A~~~~~~~l~~---~p-~~~~~~~~l~~~~ 438 (442)
+|++++|...|+++++. .| +...++..+..+.
T Consensus 216 ~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 77777777777777774 34 2555666555544
No 118
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.21 E-value=1.3e-10 Score=113.96 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 405 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 405 (442)
...+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|.+..+++.+|.++.
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 67888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 406 MLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 406 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
..|++++|++.|+++++.+|++..++..++.+..
T Consensus 356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999999999999999988888877653
No 119
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.21 E-value=9.4e-11 Score=107.01 Aligned_cols=111 Identities=13% Similarity=0.017 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
.....++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++++|.+..+++.+|.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 013459 404 REMLGYYKEAIEDFSYALVLEPTNKRASLSA 434 (442)
Q Consensus 404 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 434 (442)
+...|++++|++.++++++.+|++...+..+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 129 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVN 129 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC----
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 9999999999999999999999887766544
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.21 E-value=8.5e-11 Score=105.69 Aligned_cols=121 Identities=11% Similarity=-0.076 Sum_probs=112.8
Q ss_pred cccchHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HHh---cCHHHHHHHHHHHHhc
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAY----LES---GSFLQAEADCTKAINL 389 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~----~~~---~~~~~A~~~~~~~l~~ 389 (442)
+.-+|+...+|+.++.++...+ ++++++..+++++..+|++..+|+.++.++ ..+ +++++++..++++++.
T Consensus 60 L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~ 139 (306)
T 3dra_A 60 INELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS 139 (306)
T ss_dssp HHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh
Confidence 4455889999999999999999 999999999999999999999999999999 777 7899999999999999
Q ss_pred CCccHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 390 DKKNVKAYLRRGTAREMLGYYK--EAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 390 ~p~~~~~~~~~a~~~~~~~~~~--~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+|.|..+|+..+.++..++.++ ++++.++++++.+|.|..+|.+...+..
T Consensus 140 ~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 140 DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF 191 (306)
T ss_dssp CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999998 9999999999999999999998887653
No 121
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.21 E-value=2e-10 Score=90.16 Aligned_cols=102 Identities=14% Similarity=0.054 Sum_probs=91.9
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcC-C-ccHHHHHHHHHHHHHcCCHHHHH
Q 013459 340 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLD-K-KNVKAYLRRGTAREMLGYYKEAI 414 (442)
Q Consensus 340 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~-p-~~~~~~~~~a~~~~~~~~~~~A~ 414 (442)
.....+.+.|.+.++.++.+.++.+++|.++.+.+ +.++++..++.+++.+ | ++.+++|++|..++++++|++|.
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34567778888888888999999999999999988 6779999999999998 7 56899999999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459 415 EDFSYALVLEPTNKRASLSADRLRKVF 441 (442)
Q Consensus 415 ~~~~~~l~~~p~~~~~~~~l~~~~~~~ 441 (442)
++++++++++|+|..+......+++.+
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999888877653
No 122
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.21 E-value=1.2e-10 Score=105.07 Aligned_cols=107 Identities=18% Similarity=0.179 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH-
Q 013459 324 QSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK- 395 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~- 395 (442)
..+..+..+|.++... |++++|+.+|++++++.|.+ ..++.++|.++.++|++++|+.+|++++++.|++..
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 4567899999999996 99999999999999998754 467899999999999999999999999999887643
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459 396 ------AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 396 ------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 430 (442)
+++++|.++..+|++++|+.+|+++++++|+....
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 67899999999999999999999999999987654
No 123
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.20 E-value=2e-10 Score=104.45 Aligned_cols=117 Identities=11% Similarity=-0.001 Sum_probs=94.1
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT-YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
.|.....|..+|..+...|++++|...|+++++++|++.. +|..++.++.+.|++++|+..|+++++.+|.+...|...
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 174 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4667778888888888888888888888888888888776 788888888888888888888888888888877777666
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 401 GTAREM-LGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 401 a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
+..... .|++++|.+.|+++++.+|++..++..+..+.
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 213 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL 213 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 555433 68888888888888888888888887777665
No 124
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.20 E-value=1.8e-10 Score=83.63 Aligned_cols=83 Identities=33% Similarity=0.435 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
.+..+++.+|.++...+++++|+.+|+++++++|.+..+++.+|.++...|++++|+++|+++++++|++..++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred Hhh
Q 013459 438 RKV 440 (442)
Q Consensus 438 ~~~ 440 (442)
...
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 125
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.20 E-value=2.9e-10 Score=113.17 Aligned_cols=117 Identities=15% Similarity=0.045 Sum_probs=107.3
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.|.....+..++..+.+.|++++|++.|+++++++|++..++..++.+|.+.|++++|++.|+++++.+|++..++..++
T Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 448 (597)
T 2xpi_A 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448 (597)
T ss_dssp CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
.+|.+.|++++|++.|+++++.+|++...+..+..+.
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVA 485 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 9999999999999999999999999998888777664
No 126
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.20 E-value=2.1e-10 Score=91.09 Aligned_cols=74 Identities=18% Similarity=0.135 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHhcccH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-----------CHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQW----------LKAISFYTEAIKLNGNNATYYSNRAAAYLESG-----------SFLQAEA 381 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-----------~~~~A~~ 381 (442)
|.+++.|+++|.++...+++ ++|+..|+++++++|++..+|+++|.+|..+| ++++|++
T Consensus 33 P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~ 112 (158)
T 1zu2_A 33 PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQ 112 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHH
Confidence 78999999999999999875 59999999999999999999999999999885 8999999
Q ss_pred HHHHHHhcCCccHHH
Q 013459 382 DCTKAINLDKKNVKA 396 (442)
Q Consensus 382 ~~~~~l~~~p~~~~~ 396 (442)
+|+++++++|++..+
T Consensus 113 ~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 113 FFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHHhCCCCHHH
Confidence 999999999998643
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.18 E-value=1.9e-10 Score=89.45 Aligned_cols=83 Identities=20% Similarity=0.225 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
.....+..+|..+++.|++++|+..|+++++++|++..+++++|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred Hhh
Q 013459 438 RKV 440 (442)
Q Consensus 438 ~~~ 440 (442)
...
T Consensus 82 ~~~ 84 (126)
T 3upv_A 82 QIA 84 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 128
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=3.4e-10 Score=109.27 Aligned_cols=115 Identities=17% Similarity=0.065 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--- 390 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--- 390 (442)
+..+..++.+|.+++..|+|++|++.|++++++ +|.....|.++|.+|..+|++++|+.+|++++++.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344566777888888888888888888888775 45566777888888888888888888888887653
Q ss_pred -----CccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 391 -----KKNVKAYLRRGTAREMLG--YYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 391 -----p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
+..+.++.++|.++...+ +|++|+.+|+++++++|+++.++..++.+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~ 181 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA 181 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344667777777766544 57888888888888888888777666554
No 129
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.17 E-value=1.6e-10 Score=88.67 Aligned_cols=79 Identities=16% Similarity=0.040 Sum_probs=74.4
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
.|.....++.+|.+++..|+|++|+..|+++++++|++..+++.+|.++.++|++++|+..|++++..+|+++......
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999999999999999998765433
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.17 E-value=6e-10 Score=97.91 Aligned_cols=114 Identities=15% Similarity=0.069 Sum_probs=99.3
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cc-cHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTKAINLD--KK-NVK 395 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~-~~~ 395 (442)
..|... ..+.+|..+++.++|++|+.+|++++...+.. ..+++.+|.++.++|++++|+.+|++++... |. ..+
T Consensus 131 ~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~d 209 (282)
T 4f3v_A 131 AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARA 209 (282)
T ss_dssp TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHH
T ss_pred cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHH
Confidence 446777 89999999999999999999999887653221 3589999999999999999999999998654 55 678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459 396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR 436 (442)
Q Consensus 396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 436 (442)
+++++|.++.++|+.++|...|++++..+|+ ..+...+..
T Consensus 210 a~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 210 IAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 9999999999999999999999999999999 888777653
No 131
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.16 E-value=5.4e-11 Score=114.89 Aligned_cols=105 Identities=17% Similarity=0.155 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|.....++.+|.++.+.|+|++|+..|+++++++|++..+++++|.+|.++|++++|++.|+++++++|++..++.+++.
T Consensus 37 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~ 116 (477)
T 1wao_1 37 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 116 (477)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H--HHHcCCHHHHHHHHH-----------HHHhhCCCC
Q 013459 403 A--REMLGYYKEAIEDFS-----------YALVLEPTN 427 (442)
Q Consensus 403 ~--~~~~~~~~~A~~~~~-----------~~l~~~p~~ 427 (442)
+ +.++|++++|++.++ ++++++|+.
T Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 117 CNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 8 889999999999999 888777754
No 132
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.16 E-value=2.8e-10 Score=101.37 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=96.3
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-- 389 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-- 389 (442)
.+.+.....+..+|.++...|++++|+.+|++++++ +|....++.++|.++..+|++++|+..|++++++
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 79 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 345778899999999999999999999999999998 4666789999999999999999999999999998
Q ss_pred ------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 390 ------DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 390 ------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
.|....++..+|.++..+|++++|++++++++++
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777889999999999999999999999999987
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.15 E-value=2.2e-10 Score=89.58 Aligned_cols=88 Identities=18% Similarity=0.091 Sum_probs=83.5
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.|.....++.+|.++...+++++|+..|+++++.+|++..+++.+|.++.++|++++|+..|+++++++|.+..+++.++
T Consensus 46 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 125 (133)
T 2lni_A 46 NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQ 125 (133)
T ss_dssp CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 35668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCC
Q 013459 402 TAREMLGY 409 (442)
Q Consensus 402 ~~~~~~~~ 409 (442)
.++..+|+
T Consensus 126 ~~~~~~~~ 133 (133)
T 2lni_A 126 RCMMAQYN 133 (133)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcC
Confidence 99988764
No 134
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.15 E-value=1.8e-10 Score=112.19 Aligned_cols=116 Identities=18% Similarity=0.125 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---hcCHHHHHHHHHHHHhcCCcc
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT------YYSNRAAAYLE---SGSFLQAEADCTKAINLDKKN 393 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~---~~~~~~A~~~~~~~l~~~p~~ 393 (442)
|.....+..+|..+...|++++|+..|+++++..|++.. ++..+|.++.. .|++++|+..|++++.++|++
T Consensus 369 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 369 PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence 455678889999999999999999999999999888755 89999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 394 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
..+++.+|.++...|++++|.+.|+++++++|+++.++..+..+.
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887665544
No 135
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.15 E-value=9.8e-10 Score=107.77 Aligned_cols=114 Identities=24% Similarity=0.213 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 404 (442)
.+..++.+|..+...|++++|+..|+++++.+|+ ..++..+|.++...|++++|+..|+++++.+|++..+++.+|.++
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY 320 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 4667999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 405 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 405 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
...|++++|++.|+++++++|++..++..++.+..
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999988887753
No 136
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.15 E-value=1.7e-10 Score=94.32 Aligned_cols=84 Identities=13% Similarity=0.092 Sum_probs=78.7
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.|.....++.+|.+++..|+|++|+..|+++++++|++..+++++|.++..+|++++|+.+|+++++++|++..+++.++
T Consensus 41 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 41 APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHH
Q 013459 402 TARE 405 (442)
Q Consensus 402 ~~~~ 405 (442)
....
T Consensus 121 l~~~ 124 (164)
T 3sz7_A 121 LETT 124 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 137
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.14 E-value=1.4e-10 Score=90.44 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459 359 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
...++.++|..+++.|+|++|+.+|+++++++|++..+|+++|.+|..+|++++|++.|+++++++|++..
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence 34678899999999999999999999999999999999999999999999999999999999999988754
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=4.2e-10 Score=110.66 Aligned_cols=122 Identities=9% Similarity=0.019 Sum_probs=115.6
Q ss_pred cccchHHHHHHHHHHHHHHhccc----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQ----------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--SFLQAEADCTKA 386 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~ 386 (442)
+..+|+...+|+.++.++...++ ++++++.++++++.+|++..+|+.++.++.+++ +++++++.++++
T Consensus 56 l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~ 135 (567)
T 1dce_A 56 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF 135 (567)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence 45568899999999999999988 999999999999999999999999999999999 779999999999
Q ss_pred HhcCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 387 INLDKKNVKAYLRRGTAREMLG-YYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 387 l~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
++++|.|..+|...+.++..++ .++++++++.++++.+|+|..+|.+...+...
T Consensus 136 l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 136 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred HhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 9999999999999999999999 89999999999999999999999999887654
No 139
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.14 E-value=1.2e-09 Score=97.26 Aligned_cols=111 Identities=23% Similarity=0.178 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccH
Q 013459 323 KQSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNV 394 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~ 394 (442)
+....+++.+|..+.. .+++++|+..|+++++.+ +..+++.+|.+|.. .+++++|+.+|+++++.+ +.
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~ 110 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA 110 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Cc
Confidence 5566789999999999 999999999999999885 78999999999999 999999999999999874 78
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 395 KAYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 395 ~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
.+++++|.+|.. .+++++|+++|+++++.+ +..++..++.+..
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 899999999999 999999999999999876 5677777777654
No 140
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.14 E-value=4.2e-10 Score=85.01 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHH
Q 013459 359 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN------KRASL 432 (442)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~ 432 (442)
+...++.+|.++...|++++|+..|+++++++|.+..+++++|.++..+|++++|++.|+++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 357789999999999999999999999999999999999999999999999999999999999999999 77777
Q ss_pred HHHHHHh
Q 013459 433 SADRLRK 439 (442)
Q Consensus 433 ~l~~~~~ 439 (442)
.++.+..
T Consensus 83 ~~~~~~~ 89 (111)
T 2l6j_A 83 RLELAQG 89 (111)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666543
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.13 E-value=3.3e-10 Score=88.04 Aligned_cols=89 Identities=18% Similarity=0.061 Sum_probs=84.7
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 401 (442)
.|.....+..+|.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+.+|+++++++|++..+++.++
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 121 (131)
T 2vyi_A 42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121 (131)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCH
Q 013459 402 TAREMLGYY 410 (442)
Q Consensus 402 ~~~~~~~~~ 410 (442)
.++..+|++
T Consensus 122 ~~~~~~~~~ 130 (131)
T 2vyi_A 122 IAELKLREA 130 (131)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhcC
Confidence 999998875
No 142
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.13 E-value=2.3e-10 Score=103.92 Aligned_cols=121 Identities=9% Similarity=-0.096 Sum_probs=113.8
Q ss_pred cccchHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-c-CHHHHHHHHHHHHhcCCccHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-G-SFLQAEADCTKAINLDKKNVK 395 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~-~~~~A~~~~~~~l~~~p~~~~ 395 (442)
+..+|....+|+.++.++...+ ++++++..+++++..+|++..+|+.++.++.++ + +++++++.++++++.+|.|..
T Consensus 81 L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~ 160 (349)
T 3q7a_A 81 VRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYH 160 (349)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHH
T ss_pred HHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHH
Confidence 4555889999999999999999 599999999999999999999999999999998 8 999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 396 AYLRRGTAREMLGYYK--------EAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 396 ~~~~~a~~~~~~~~~~--------~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+|...+.++.+++.++ +++++++++++.+|.|..+|.+...+..
T Consensus 161 AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 161 TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999998888 9999999999999999999999988754
No 143
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.13 E-value=7.1e-10 Score=103.30 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=91.4
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
..+.....++++|.++++.++|++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..+
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHH
Q 013459 401 GTAREMLGYYKEAIED 416 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~ 416 (442)
+.++..+++++++.+.
T Consensus 348 ~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888654
No 144
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.13 E-value=6e-10 Score=85.98 Aligned_cols=78 Identities=12% Similarity=0.054 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
.++.+|..+.+.|++++|+..|+++++++|++..+|+.+|.++..+|++++|+.+|+++++++|++..++..++.+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999988887753
No 145
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.13 E-value=2.4e-10 Score=93.28 Aligned_cols=90 Identities=13% Similarity=0.013 Sum_probs=82.0
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH-HHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV-KAYLRR 400 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~ 400 (442)
.|.....++++|.++++.|+|++|+..++++++++|++..+++.+|.+|..+|++++|+.+|++++.++|++. .+...+
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999999999999999999999998 667777
Q ss_pred HHHHHHcCCHH
Q 013459 401 GTAREMLGYYK 411 (442)
Q Consensus 401 a~~~~~~~~~~ 411 (442)
+.+....+++.
T Consensus 139 ~~~~~~~~~~~ 149 (162)
T 3rkv_A 139 KIVTERRAEKK 149 (162)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 77776655443
No 146
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.13 E-value=2.5e-10 Score=84.83 Aligned_cols=85 Identities=11% Similarity=0.106 Sum_probs=72.2
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLR 399 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~ 399 (442)
+|.+...++.+|.+++..|+|++|+..|+++++++|++..+++.+|.+|..+|++++|+..|++++++.|.+ ......
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 477889999999999999999999999999999999999999999999999999999999999999987643 333334
Q ss_pred HHHHHHH
Q 013459 400 RGTAREM 406 (442)
Q Consensus 400 ~a~~~~~ 406 (442)
+...+..
T Consensus 83 l~~~l~~ 89 (100)
T 3ma5_A 83 LQDAKLK 89 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 147
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.12 E-value=5.9e-11 Score=109.39 Aligned_cols=104 Identities=14% Similarity=0.046 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH-H
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR-E 405 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~-~ 405 (442)
..++++|.++++.++|++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.+. .
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999999884 4
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHH
Q 013459 406 MLGYYKEAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 406 ~~~~~~~A~~~~~~~l~~~p~~~~~ 430 (442)
..++.+++.+.|++++...|+++..
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCCC
Confidence 5667888999999999999987643
No 148
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=8.3e-10 Score=108.56 Aligned_cols=120 Identities=12% Similarity=0.079 Sum_probs=112.7
Q ss_pred ccchHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCccHHH
Q 013459 320 FNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKA 396 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~ 396 (442)
..+|....+|+.++.++.+.+ +|+++++.++++++++|.+..+|..++.+..+.+ .+++++++++++++.+|.|..+
T Consensus 101 ~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~sa 180 (567)
T 1dce_A 101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180 (567)
T ss_dssp HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccH
Confidence 345889999999999999999 7799999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 397 YLRRGTAREML--------------GYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 397 ~~~~a~~~~~~--------------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
|++++.++..+ +.++++++++.+++.++|++..+|.+++.+..
T Consensus 181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237 (567)
T ss_dssp HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence 99999999885 56899999999999999999999999988764
No 149
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.11 E-value=7.1e-10 Score=99.66 Aligned_cols=120 Identities=13% Similarity=-0.022 Sum_probs=110.3
Q ss_pred cchHHHHHHHHHHHHH----Hhc---ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHH--HHHHHHHHHHhcCC
Q 013459 321 NQKQSAEIAKEKGNQA----YKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL--QAEADCTKAINLDK 391 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~--~A~~~~~~~l~~~p 391 (442)
.+|....+|+.++.++ ... +++++++.+++++++.+|.+..+|+.++.+..++++++ ++++.++++++.+|
T Consensus 98 ~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL 177 (306)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence 3477888999999888 666 78999999999999999999999999999999999998 99999999999999
Q ss_pred ccHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 392 KNVKAYLRRGTAREMLGY------YKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 392 ~~~~~~~~~a~~~~~~~~------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
.|..+|.+.+.++..+++ ++++++++++++..+|+|..+|.++..+...
T Consensus 178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~ 232 (306)
T 3dra_A 178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER 232 (306)
T ss_dssp TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 999999999999999887 9999999999999999999999998887643
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.11 E-value=4e-10 Score=95.26 Aligned_cols=97 Identities=18% Similarity=0.116 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 405 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 405 (442)
...++.+|.+++..|+|++|+..++++++++|++..+++.+|.++..+|++++|+.+|+++++++|++..++..++.++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHH-HHHHHHHh
Q 013459 406 MLGYYKEAI-EDFSYALV 422 (442)
Q Consensus 406 ~~~~~~~A~-~~~~~~l~ 422 (442)
.+++++++. +.|.+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999988877 44555443
No 151
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.10 E-value=3.7e-10 Score=108.59 Aligned_cols=93 Identities=18% Similarity=0.130 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
.....++++|.++++.++|++|+.+|+++++++|++..+++++|.+|.++|++++|+.+|+++++++|++..++..++.+
T Consensus 315 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 315 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHH
Q 013459 404 REMLGYYKEAIED 416 (442)
Q Consensus 404 ~~~~~~~~~A~~~ 416 (442)
+..++++++|.+.
T Consensus 395 ~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 395 QKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887753
No 152
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.09 E-value=1.4e-09 Score=85.59 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=79.8
Q ss_pred hhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459 354 KLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 433 (442)
Q Consensus 354 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 433 (442)
..++.+...++.+|.+++..|++++|+..|++++.++|.+..+++++|.++..+|++++|+..|+++++++|++..++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 013459 434 ADRLRK 439 (442)
Q Consensus 434 l~~~~~ 439 (442)
++.+..
T Consensus 83 l~~~~~ 88 (137)
T 3q49_B 83 LGQCQL 88 (137)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.09 E-value=1.9e-10 Score=103.18 Aligned_cols=114 Identities=14% Similarity=0.029 Sum_probs=96.1
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH-----HH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV-----KA 396 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~ 396 (442)
.|.+...++.+|.++.+.|+|++|+..|+++++++|++..+++++|.++..+|++++|+..|+++++++|++. ..
T Consensus 34 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 113 (281)
T 2c2l_A 34 NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113 (281)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999999999999988652 11
Q ss_pred HH--------------------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 397 YL--------------------------RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 397 ~~--------------------------~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
+. .++.. ..|++++|++.++++++++|++......+..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 178 (281)
T 2c2l_A 114 PSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDDGHIRAQQACI 178 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchhhhhhHHHHH
Confidence 11 11221 35788999999999999999887766655544
No 154
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.08 E-value=1.3e-09 Score=105.28 Aligned_cols=115 Identities=14% Similarity=0.027 Sum_probs=90.2
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCC
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESG--SFLQAEADCTKAINLDK 391 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~~p 391 (442)
.+..+..+.++|.+|+..|+|++|+.+|++++++. ++.+.++.++|.++.+.+ +|++|+.+|+++++++|
T Consensus 90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p 169 (472)
T 4g1t_A 90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169 (472)
T ss_dssp TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence 45667778888888888888888888888888763 345677888887776654 68888888888888888
Q ss_pred ccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459 392 KNVKAYLRRGTARE---MLGYYKEAIEDFSYALVLEPTNKRASLSADR 436 (442)
Q Consensus 392 ~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 436 (442)
++++++..++.++. ..+++++|++.|+++++++|++..++..++.
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~ 217 (472)
T 4g1t_A 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLAL 217 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHH
Confidence 88888888887754 4466778888888888888888887766654
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.08 E-value=2.1e-09 Score=97.25 Aligned_cols=118 Identities=12% Similarity=0.086 Sum_probs=109.7
Q ss_pred cchHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCccHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKAY 397 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~ 397 (442)
.+|.+..+|+.++.++...+ ++++++.+++++++.+|.|..+|..++.+....+. +++++.++.++++.+|.|..+|
T Consensus 103 ~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW 182 (331)
T 3dss_A 103 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW 182 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 45888999999999999988 49999999999999999999999999999999999 6999999999999999999999
Q ss_pred HHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 398 LRRGTAREML--------------GYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 398 ~~~a~~~~~~--------------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
.+++.++..+ +.++++++++.+++..+|+|..+|.++..+.
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 237 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999887 5589999999999999999999998776554
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.08 E-value=4.8e-10 Score=84.60 Aligned_cols=85 Identities=22% Similarity=0.312 Sum_probs=80.3
Q ss_pred hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHH
Q 013459 355 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT--NKRASL 432 (442)
Q Consensus 355 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~ 432 (442)
++|++..+++.+|.++...|++++|+..|+++++++|.+..+++.+|.++..+|++++|+++|+++++++|+ +..++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 368888999999999999999999999999999999999999999999999999999999999999999999 999998
Q ss_pred HHHHHHh
Q 013459 433 SADRLRK 439 (442)
Q Consensus 433 ~l~~~~~ 439 (442)
.++.+..
T Consensus 81 ~l~~~~~ 87 (112)
T 2kck_A 81 AKADALR 87 (112)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8888754
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.08 E-value=3.6e-09 Score=95.68 Aligned_cols=122 Identities=9% Similarity=0.020 Sum_probs=113.4
Q ss_pred cccchHHHHHHHHHHHHHHhccc----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC--HHHHHHHHHHH
Q 013459 319 TFNQKQSAEIAKEKGNQAYKDKQ----------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--FLQAEADCTKA 386 (442)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~ 386 (442)
+..+|....+|+.++.++...++ +++++.++++++..+|++..+|+.++.++..+++ +++++..+.++
T Consensus 57 L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 136 (331)
T 3dss_A 57 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF 136 (331)
T ss_dssp HTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred HHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence 55668899999999999988776 7999999999999999999999999999999994 99999999999
Q ss_pred HhcCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHhh
Q 013459 387 INLDKKNVKAYLRRGTAREMLGY-YKEAIEDFSYALVLEPTNKRASLSADRLRKV 440 (442)
Q Consensus 387 l~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 440 (442)
+..+|.|..+|...+.++...+. ++++++++.++++.+|.|..+|.+...+...
T Consensus 137 l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 137 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998 6999999999999999999999999887653
No 158
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.08 E-value=5.3e-10 Score=101.17 Aligned_cols=105 Identities=17% Similarity=0.172 Sum_probs=95.5
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL---- 389 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---- 389 (442)
.+.....+..+|.++...|++++|+.+|++++++ .|....++..+|.++..+|++++|+..|+++++.
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4677889999999999999999999999999998 6666788999999999999999999999999974
Q ss_pred ---------------------------------------------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 390 ---------------------------------------------DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 390 ---------------------------------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
+|....+++.+|.+|..+|++++|.++|++++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 46667899999999999999999999999999988
Q ss_pred CC
Q 013459 425 PT 426 (442)
Q Consensus 425 p~ 426 (442)
|+
T Consensus 309 ~~ 310 (311)
T 3nf1_A 309 KQ 310 (311)
T ss_dssp C-
T ss_pred hc
Confidence 75
No 159
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.07 E-value=9.4e-10 Score=104.09 Aligned_cols=116 Identities=17% Similarity=0.213 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCc
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINL------DKK 392 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~ 392 (442)
+.....++.+|..++..|+|++|+..|++++++.|++. .++..+|.+|...|++++|+.+|++++++ .+.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 56778899999999999999999999999999999986 58899999999999999999999999988 577
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHH
Q 013459 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVL------EPTNKRASLSADRLR 438 (442)
Q Consensus 393 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~ 438 (442)
...+++.+|.+|..+|++++|+++|++++++ .+....++..++.+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999998 444445555555554
No 160
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.07 E-value=9.8e-10 Score=103.13 Aligned_cols=104 Identities=16% Similarity=0.066 Sum_probs=76.8
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhcCHHHHHHHHHHHHh-----cC
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA------TYYSNRAAAYLESGSFLQAEADCTKAIN-----LD 390 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~~~~~l~-----~~ 390 (442)
.+..+..+..+|.++...|+|++|+.+|++++++.+... .++.++|.+|..+|++++|+.+|+++++ .+
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 445566777778888888888888888888877654332 4677778888888888888888888777 35
Q ss_pred -CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 391 -KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 391 -p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
|....+++++|.++..+|++++|.+++++++++.+
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 66677777788888888888888888888887754
No 161
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.06 E-value=5.2e-09 Score=93.13 Aligned_cols=109 Identities=20% Similarity=0.238 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHH
Q 013459 325 SAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKA 396 (442)
Q Consensus 325 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~ 396 (442)
....++.+|..+.. .+++++|+..|+++++.+ +..+++.+|.+|.. .+++++|+.+|+++++.+ +..+
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a 148 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDG 148 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHH
Confidence 56788899999999 999999999999999874 88999999999999 999999999999999976 6788
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 397 YLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 397 ~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
++++|.+|.. .+++++|+++|+++++. ++..++..++.+..
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYH 193 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 9999999998 99999999999999987 45777777777654
No 162
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.06 E-value=1.2e-09 Score=86.95 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-------cHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 013459 360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-------NVK-----AYLRRGTAREMLGYYKEAIEDFSYALVL---- 423 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~~l~~---- 423 (442)
...+.++|..+++.|+|++|+..|+++++++|+ +.. +|+++|.++.++|+|++|+.+|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 356788999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ---CCCChHHH----HHHHHHHhh
Q 013459 424 ---EPTNKRAS----LSADRLRKV 440 (442)
Q Consensus 424 ---~p~~~~~~----~~l~~~~~~ 440 (442)
+|++..+| ..++.+...
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~ 114 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDG 114 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHH
Confidence 99999999 888776543
No 163
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.06 E-value=7.4e-10 Score=100.23 Aligned_cols=102 Identities=16% Similarity=0.125 Sum_probs=93.9
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINL---- 389 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---- 389 (442)
.+.....+..+|.++...|++++|+.+|++++++. |....++..+|.++...|++++|+.+|++++++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999884 455678999999999999999999999999998
Q ss_pred ----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 390 ----DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 390 ----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
+|....+++.+|.++..+|++++|++++++++++
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777889999999999999999999999999975
No 164
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.06 E-value=8.7e-10 Score=89.13 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------ccH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDK------KNV 394 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p------~~~ 394 (442)
..+..+|..+...|++++|+.++++++++.+.. ..++..+|.++...|++++|+..+++++++.+ ...
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 455666666666666666666666666554332 34555666666666666666666666665421 113
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
.++..+|.++...|++++|.+++++++++..
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665544
No 165
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.03 E-value=2.7e-09 Score=95.92 Aligned_cols=100 Identities=10% Similarity=-0.036 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRR 400 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~ 400 (442)
|.........+..+...+++++|+..|+++++.+|++..+++++|.++.+.|++++|+..|+++++.+|++ ..++.++
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 34445555666667777777778888889999999999999999999999999999999999999999998 8899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 013459 401 GTAREMLGYYKEAIEDFSYALV 422 (442)
Q Consensus 401 a~~~~~~~~~~~A~~~~~~~l~ 422 (442)
+.++..+|+.++|...|++++.
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999875
No 166
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=4.1e-09 Score=90.08 Aligned_cols=111 Identities=13% Similarity=-0.004 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCC--cc
Q 013459 324 QSAEIAKEKGNQAYKDK----QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDK--KN 393 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p--~~ 393 (442)
..+.+++.+|..+.. + ++++|+.+|+++++ +.++.+++++|.+|.. .+++++|+.+|+++.+..+ .+
T Consensus 48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 124 (212)
T 3rjv_A 48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA 124 (212)
T ss_dssp TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence 345677777777777 5 77888888887754 4577777778877776 6778888888888877776 34
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 394 VKAYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 394 ~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
+.+++++|.+|.. .+++++|+++|+++.++ +.++.+...++.+.
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMF 172 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 7777778887777 67778888888887777 55666666666654
No 167
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.02 E-value=2.9e-09 Score=77.40 Aligned_cols=75 Identities=17% Similarity=0.073 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459 356 NGNNATYYSNRAAAYLESGS---FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 356 ~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 430 (442)
+|+++..+..+|.+++..++ .++|...++++++++|++..+++.+|..+++.|+|++|+.+|+++++.+|.++..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 57788888888888876655 6888888888888888888888888888888888888888888888888875443
No 168
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.02 E-value=1.2e-08 Score=92.02 Aligned_cols=115 Identities=11% Similarity=0.005 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHH---hcCCccH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAI---NLDKKNV 394 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l---~~~p~~~ 394 (442)
.....++.+|..+...|+|++|+..|+++++..+.. ..+++++|.+|..+|++++|+.+|++++ +..+++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~ 192 (293)
T 2qfc_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence 445667788999999999999999999999875543 5689999999999999999999999999 4455432
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHH
Q 013459 395 ----KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN------KRASLSADRLR 438 (442)
Q Consensus 395 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~ 438 (442)
.+++++|.+|..+|++++|++++++++++.++. ..++..++.+.
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y 246 (293)
T 2qfc_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL 246 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHH
T ss_pred cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999886431 44555555554
No 169
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.02 E-value=3.3e-09 Score=78.35 Aligned_cols=75 Identities=16% Similarity=0.238 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH--HHHHHHH
Q 013459 364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVK-AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS--LSADRLR 438 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~--~~l~~~~ 438 (442)
+.+|.++.+.|++++|+..|+++++.+|++.. +++.+|.+|..+|++++|+++|+++++++|++..++ ..+.++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~ 81 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDIL 81 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999 999999999999999999999999999999999887 4444443
No 170
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.01 E-value=1.9e-09 Score=97.25 Aligned_cols=114 Identities=11% Similarity=0.033 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CCc
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINL-------DKK 392 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~p~ 392 (442)
...+..+|..+...++|++|+.+|++++++.+.. ..++.++|.+|..+|++++|+.+|+++++. .+.
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence 3455568999999999999999999999975443 347899999999999999999999999952 233
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHh
Q 013459 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN------KRASLSADRLRK 439 (442)
Q Consensus 393 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~ 439 (442)
...+++++|.+|.++|+|++|++++++++++.++. ..++..++.+..
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~ 247 (293)
T 3u3w_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLR 247 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999987544 556666666543
No 171
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.01 E-value=3.9e-09 Score=81.13 Aligned_cols=86 Identities=33% Similarity=0.463 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|.....++.+|.++...|++++|+..|+++++.+|++...+..+|.++...|++++|+..|+++++.+|.+..++..++.
T Consensus 40 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 40 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119 (125)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 55677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcC
Q 013459 403 AREMLG 408 (442)
Q Consensus 403 ~~~~~~ 408 (442)
++..+|
T Consensus 120 ~~~~~g 125 (125)
T 1na0_A 120 AKQKQG 125 (125)
T ss_dssp HHHHHC
T ss_pred HHHhcc
Confidence 987654
No 172
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.01 E-value=2.1e-09 Score=97.62 Aligned_cols=105 Identities=16% Similarity=0.105 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---- 393 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---- 393 (442)
..+..+..+|.++.. |+|++|+.+|++++++.+.. ..++.++|.+|.++|+|++|+.+|++++.+.+.+
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Confidence 456789999999999 99999999999999987653 5788999999999999999999999999986544
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459 394 --VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 394 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 430 (442)
..+++.+|.++..+|++++|+.+|++++ ++|+....
T Consensus 193 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 193 TCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 3478889999999999999999999999 99976543
No 173
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.00 E-value=2.2e-09 Score=97.49 Aligned_cols=119 Identities=13% Similarity=0.030 Sum_probs=111.5
Q ss_pred cchHHHHHHHHHHHHHHhc-c-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHH--------HHHHHHHHHHhcC
Q 013459 321 NQKQSAEIAKEKGNQAYKD-K-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL--------QAEADCTKAINLD 390 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~~l~~~ 390 (442)
.+|.+..+|+.++.++.+. + ++++++++++++++.+|.+..+|+.++.+..+.++++ ++++.++++++.+
T Consensus 118 ~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 118 QNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred hCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC
Confidence 4478899999999999987 7 8999999999999999999999999999999999888 9999999999999
Q ss_pred CccHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 391 KKNVKAYLRRGTAREMLGY-------YKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 391 p~~~~~~~~~a~~~~~~~~-------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
|.|..+|.+++.++.++++ ++++++++++++.++|+|..+|.++..+..
T Consensus 198 p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 198 GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999987 799999999999999999999999877754
No 174
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.99 E-value=4.6e-09 Score=98.49 Aligned_cols=103 Identities=11% Similarity=-0.021 Sum_probs=83.7
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK-----LN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--- 390 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--- 390 (442)
.+.+..+..+.++|.++...|+|++|+.+|+++++ .+ |....++.++|.++.++|++++|+.++++++.+.
T Consensus 218 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 218 KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 44556667899999999999999999999999999 45 6778899999999999999999999999999884
Q ss_pred --CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013459 391 --KKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 422 (442)
Q Consensus 391 --p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 422 (442)
+.....+..++.++...|+++...+.+...-+
T Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~ 331 (383)
T 3ulq_A 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES 331 (383)
T ss_dssp TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33344467789999999999444444433333
No 175
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.99 E-value=1.5e-09 Score=98.53 Aligned_cols=105 Identities=10% Similarity=-0.011 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--- 393 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--- 393 (442)
...+..+.++|.++...|+|++|+.+|++++++.++. ..++.++|.+|.. |++++|+.+|++++.+.+..
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~ 151 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL 151 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence 4567889999999999999999999999999985432 4678899999998 99999999999999987643
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 013459 394 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428 (442)
Q Consensus 394 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 428 (442)
..++.++|.+|..+|++++|+.+|++++++.+++.
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999877654
No 176
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.99 E-value=4.1e-09 Score=95.02 Aligned_cols=102 Identities=18% Similarity=0.142 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-- 393 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-- 393 (442)
......+..+|.++...|+|++|+.+|+++++.. +....+++++|.+|.++|+|++|+.++++++++.+..
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~ 231 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence 3456789999999999999999999999999532 2234688999999999999999999999999886443
Q ss_pred ----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Q 013459 394 ----VKAYLRRGTAREMLG-YYKEAIEDFSYALVLE 424 (442)
Q Consensus 394 ----~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~ 424 (442)
..+++++|.+|..+| ++++|+++|++++.+.
T Consensus 232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 789999999999999 5799999999999764
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.98 E-value=3.8e-09 Score=85.31 Aligned_cols=105 Identities=19% Similarity=0.245 Sum_probs=92.1
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--N----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN- 393 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~- 393 (442)
+....+..+..+|..++..|++++|+.++++++++.++ + ..++..+|.++...|++++|+.++++++++.+..
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 34677889999999999999999999999999987542 2 3588899999999999999999999999876442
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 394 -----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 394 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
..+++++|.++...|++++|++++++++++.+
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999998743
No 178
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.98 E-value=2.5e-09 Score=90.30 Aligned_cols=104 Identities=14% Similarity=0.110 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--c
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---NGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--N 393 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~ 393 (442)
+.....+..+|..+...|++++|+..+++++++ .+++ ..++.++|.++..+|++++|+..+++++.+.+. +
T Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 142 (203)
T 3gw4_A 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 344445555555555555555555555555554 2211 234445555555555555555555555443211 1
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 394 ----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 394 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
..++.++|.++..+|++++|.+++++++++...
T Consensus 143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 123344555555555555555555555554433
No 179
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.98 E-value=4.5e-09 Score=95.84 Aligned_cols=104 Identities=20% Similarity=0.247 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCccH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL------DKKNV 394 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~~~ 394 (442)
....++..|..++..|+|++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++.+ .+...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 45678889999999999999999999999999998 468889999999999999999999999887 45557
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 013459 395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428 (442)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 428 (442)
.++..+|.++...|++++|+..+++++++.+...
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 117 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999999999999999999876543
No 180
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=6.3e-09 Score=82.81 Aligned_cols=82 Identities=20% Similarity=0.157 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 404 (442)
....++.+|.+++..++|++|+..|+++++++|++..+++.+|.++..+|++++|+.+|+++++++|++..++..++.+.
T Consensus 64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999998888765
Q ss_pred HH
Q 013459 405 EM 406 (442)
Q Consensus 405 ~~ 406 (442)
.+
T Consensus 144 ~~ 145 (148)
T 2dba_A 144 GP 145 (148)
T ss_dssp CS
T ss_pred hh
Confidence 43
No 181
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.97 E-value=2.8e-09 Score=81.21 Aligned_cols=86 Identities=8% Similarity=0.037 Sum_probs=73.8
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLR 399 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~ 399 (442)
.|.....++.+|.+++..|+|++|+..|+++++++|++..+++.+|.++..+|++++|+..|+++++++|.+ ......
T Consensus 15 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (115)
T 2kat_A 15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKE 94 (115)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHH
Confidence 366788999999999999999999999999999999999999999999999999999999999999998754 344444
Q ss_pred HHHHHHHc
Q 013459 400 RGTAREML 407 (442)
Q Consensus 400 ~a~~~~~~ 407 (442)
+...+..+
T Consensus 95 l~~~l~~l 102 (115)
T 2kat_A 95 LQVFLRRL 102 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444433
No 182
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.97 E-value=5.9e-09 Score=79.21 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
|.....++.+|.+++..|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++.
T Consensus 35 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 35 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 56688999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HH
Q 013459 403 AR 404 (442)
Q Consensus 403 ~~ 404 (442)
+.
T Consensus 115 ~~ 116 (118)
T 1elw_A 115 ME 116 (118)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 183
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=6.9e-09 Score=88.67 Aligned_cols=112 Identities=11% Similarity=-0.024 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCcc
Q 013459 324 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKN 393 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~ 393 (442)
..+.+++.+|..+.. .+++++|+..|+++++..+ +++.+++++|.+|.. .+++++|+.+|++++++ +.+
T Consensus 83 g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~ 161 (212)
T 3rjv_A 83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT 161 (212)
T ss_dssp TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT
T ss_pred CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC
Confidence 457789999999998 8999999999999999987 358999999999999 88999999999999998 677
Q ss_pred HHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 394 VKAYLRRGTAREML-G-----YYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 394 ~~~~~~~a~~~~~~-~-----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
+.+++++|.+|... | ++++|+.+|+++.+.. +..+...+..+.
T Consensus 162 ~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~l~ 210 (212)
T 3rjv_A 162 GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRIS 210 (212)
T ss_dssp THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHhh
Confidence 88999999999864 3 8999999999999884 567777777765
No 184
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.97 E-value=5.4e-09 Score=94.22 Aligned_cols=102 Identities=18% Similarity=0.187 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAI---KLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINLDKK--- 392 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--- 392 (442)
......++.+|..+...|+|++|+.+|++++ +..+++. .+++++|.+|..+|+|++|+.++++++++.+.
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 3457799999999999999999999999999 4455543 68999999999999999999999999987643
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhC
Q 013459 393 ---NVKAYLRRGTAREMLGYYKEA-IEDFSYALVLE 424 (442)
Q Consensus 393 ---~~~~~~~~a~~~~~~~~~~~A-~~~~~~~l~~~ 424 (442)
...+++++|.+|..+|++++| ..++++++.+.
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 267899999999999999999 88899998764
No 185
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.96 E-value=1.4e-08 Score=95.08 Aligned_cols=104 Identities=17% Similarity=0.024 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-----cCC
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAIN-----LDK 391 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-----~~p 391 (442)
+..+..+..+|.++...|+|++|+++|++++++.+. ...++.++|.+|..+|++++|+.+|++++. .+|
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 457888999999999999999999999999987432 246889999999999999999999999999 788
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 392 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
....+++++|.++..+|++++|..++++++++.+.
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999998654
No 186
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.96 E-value=7.3e-09 Score=97.46 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=79.8
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT------YYSNRAAAYLESGSFLQAEADCTKAINLDKKN-- 393 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-- 393 (442)
.+.....+..+|.++...|+|++|+..|++++++.++... ++..+|.++...|++++|+.+|++++.+.+..
T Consensus 183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 262 (406)
T 3sf4_A 183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 262 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence 3556677888888888888888888888888877554433 77778888888888888888888887766544
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013459 394 ----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427 (442)
Q Consensus 394 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 427 (442)
..+++.+|.++...|++++|+++|++++++.+..
T Consensus 263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 5677778888888888888888888887775543
No 187
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.96 E-value=1.1e-08 Score=79.48 Aligned_cols=85 Identities=8% Similarity=0.016 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 399 (442)
+.....++.+|.+++..|+|++|+..|+++++.+|++ ..+++.+|.++.++|++++|+..|+++++.+|++..+...
T Consensus 36 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 36 VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 3344789999999999999999999999999999999 8899999999999999999999999999999999887665
Q ss_pred HHHHHHHc
Q 013459 400 RGTAREML 407 (442)
Q Consensus 400 ~a~~~~~~ 407 (442)
+..+....
T Consensus 116 ~~~l~~l~ 123 (129)
T 2xev_A 116 QERLQSIR 123 (129)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 55544433
No 188
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.93 E-value=4.2e-09 Score=99.13 Aligned_cols=104 Identities=20% Similarity=0.236 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCcc
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINL------DKKN 393 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~~ 393 (442)
..+..++..|..++..|+|++|+.+|++++++.|++. .++..+|.++...|++++|+.+|++++.+ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4567889999999999999999999999999999984 68889999999999999999999999877 3455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013459 394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427 (442)
Q Consensus 394 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 427 (442)
..+++.+|.++..+|++++|+.++++++++.+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 120 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 120 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 7799999999999999999999999999987754
No 189
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.93 E-value=4.4e-09 Score=99.40 Aligned_cols=104 Identities=17% Similarity=0.206 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT------YYSNRAAAYLESGSFLQAEADCTKAINLDKKN--- 393 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--- 393 (442)
+.....+..+|.+++..|+|++|+.+|++++++.++... ++..+|.++..+|++++|+.+|++++.+.+..
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 456667777788888888888888888877777654322 67777777777788888888877777766533
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 394 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 394 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
..+++.+|.++..+|++++|++++++++++.++
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777776543
No 190
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.92 E-value=7.5e-09 Score=96.92 Aligned_cols=120 Identities=15% Similarity=0.059 Sum_probs=102.7
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNRAAAYLESGSFLQAEADCTKAINLDK- 391 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p- 391 (442)
.+.+..+..++.+|.+++..|++++|+.++++++++.+. ...++.++|.+|..+|++++|+.+|++++++.+
T Consensus 135 ~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 214 (378)
T 3q15_A 135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD 214 (378)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 445778899999999999999999999999999988543 245788999999999999999999999998743
Q ss_pred -----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCChHHHHHHHHHHh
Q 013459 392 -----KNVKAYLRRGTAREMLGYYKEAIEDFSYALV-----LEPTNKRASLSADRLRK 439 (442)
Q Consensus 392 -----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-----~~p~~~~~~~~l~~~~~ 439 (442)
....+++++|.+|..+|++++|+++|+++++ .+|....+...++.+..
T Consensus 215 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC 272 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence 2246889999999999999999999999999 67777777777776653
No 191
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.89 E-value=2.6e-08 Score=74.28 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
+..++.+|..+++.++|.+|+..|+++++.. .....++..+|.++.++|++++|+..++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445666666666666666666666666542 123455556666666666666666666666666666655555
Q ss_pred HHH
Q 013459 399 RRG 401 (442)
Q Consensus 399 ~~a 401 (442)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 544
No 192
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.87 E-value=1.3e-08 Score=92.81 Aligned_cols=105 Identities=19% Similarity=0.227 Sum_probs=87.0
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-- 393 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-- 393 (442)
.+.....+..+|..++..|++++|+..+++++++.+.. ..++..+|.++...|++++|+..+++++.+.+..
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 258 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 35667788889999999999999999999998875443 2378888999999999999999999988876554
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 394 ----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 394 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
..++..+|.++..+|++++|.+++++++++.+.
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 668888899999999999999999998887654
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.87 E-value=2.4e-08 Score=95.85 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCc
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-----DKK 392 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~ 392 (442)
+....+.+..+..+|+|++|+.+|++++++ .+++ ...+.++|.+|..+|+|++|+.++++++.+ .|+
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 334456677788999999999999999986 3444 568899999999999999999999999876 244
Q ss_pred c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCChHHHHHHH
Q 013459 393 N---VKAYLRRGTAREMLGYYKEAIEDFSYALVL-----EPTNKRASLSAD 435 (442)
Q Consensus 393 ~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~ 435 (442)
+ ...+.++|.+|..+|++++|+..|++++++ .|+++.....+.
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~ 439 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEA 439 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 4 558899999999999999999999999974 677776655443
No 194
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.86 E-value=7.2e-08 Score=72.74 Aligned_cols=104 Identities=13% Similarity=0.014 Sum_probs=90.6
Q ss_pred hcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHH---HHHHHHHHHhcC-C-ccHHHHHHHHHHHHHcCCHHH
Q 013459 338 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ---AEADCTKAINLD-K-KNVKAYLRRGTAREMLGYYKE 412 (442)
Q Consensus 338 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~---A~~~~~~~l~~~-p-~~~~~~~~~a~~~~~~~~~~~ 412 (442)
.......+...|.+.+..++.+..+.+++|+++.+..+... ++..++..++.+ | .+.+.+|.+|..++++|+|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 34455667777888888888899999999999999887766 999999999887 5 567899999999999999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013459 413 AIEDFSYALVLEPTNKRASLSADRLRKVF 441 (442)
Q Consensus 413 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 441 (442)
|.++++.+++.+|+|..+......+++.+
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998888877654
No 195
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.86 E-value=2.4e-08 Score=98.02 Aligned_cols=117 Identities=10% Similarity=-0.020 Sum_probs=95.0
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
.|.....|..++..+.+.|++++|...|+++++++|.++ .+|..++.++.+.|++++|++.|+++++..|.+...+...
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~ 396 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 396 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH
Confidence 467788888999999999999999999999999988885 5888888888888888888888888888877776666666
Q ss_pred HHH-HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 401 GTA-REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 401 a~~-~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
+.+ +...|++++|.+.|+++++.+|+++.++..+..+.
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~ 435 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL 435 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 554 34678888888888888888888888877776654
No 196
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.86 E-value=1.1e-08 Score=86.40 Aligned_cols=103 Identities=10% Similarity=-0.025 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CC--
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK------LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL---DK-- 391 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p-- 391 (442)
......+..+|..+...|+|++|+.+|+++++ ..+....++.++|.++...|++++|+..+++++.+ .+
T Consensus 23 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 102 (203)
T 3gw4_A 23 ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED 102 (203)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc
Confidence 45688999999999999999999999999999 55666789999999999999999999999999988 33
Q ss_pred --ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 392 --KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 392 --~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
....+++++|.++..+|++++|+.++++++++.+
T Consensus 103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 103 PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2356789999999999999999999999997643
No 197
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.85 E-value=8.8e-09 Score=90.52 Aligned_cols=113 Identities=13% Similarity=0.034 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRGTA 403 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~ 403 (442)
.+.....+..+...|+|++|.+.|+..+...|++. ..+.+|.++++.++|++|+..|+++.+..+.. ..+++++|.+
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence 45677789999999999999999999999999888 99999999999999999999999887764222 4589999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhC--CC-ChHHHHHHHHHHh
Q 013459 404 REMLGYYKEAIEDFSYALVLE--PT-NKRASLSADRLRK 439 (442)
Q Consensus 404 ~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~l~~~~~ 439 (442)
+..+|++++|+.+|++++.-. |. ..+++..++.+..
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~ 219 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARR 219 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 999999999999999998544 44 4456666665543
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.82 E-value=2e-07 Score=73.47 Aligned_cols=98 Identities=17% Similarity=0.115 Sum_probs=87.9
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-
Q 013459 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM- 406 (442)
Q Consensus 332 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~- 406 (442)
+|..+...+.+++|+..|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+. .++.+++++|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 899999999999999999999987 688999999999999 89999999999999986 678999999999999
Q ss_pred ---cCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459 407 ---LGYYKEAIEDFSYALVLEPTNKRASLSAD 435 (442)
Q Consensus 407 ---~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 435 (442)
.+++++|+++|+++.+. .++.+...++
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 89999999999999988 4555655544
No 199
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.82 E-value=3.3e-08 Score=93.34 Aligned_cols=106 Identities=11% Similarity=-0.008 Sum_probs=87.3
Q ss_pred HHHHHhcccHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCcc---HHH
Q 013459 333 GNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-----DKKN---VKA 396 (442)
Q Consensus 333 a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~~---~~~ 396 (442)
.....+.|+|++|+.+|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.. .|++ ...
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 34444578999999999999986 4555 467889999999999999999999999865 2444 558
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCChHHHHHHHHHH
Q 013459 397 YLRRGTAREMLGYYKEAIEDFSYALVL-----EPTNKRASLSADRLR 438 (442)
Q Consensus 397 ~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~ 438 (442)
++++|.+|..+|+|++|+.+|++++++ .|+++........+.
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 899999999999999999999999975 688887776655553
No 200
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.78 E-value=6.1e-08 Score=91.68 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----Cc
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLD-----KK 392 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~ 392 (442)
.+........+.++|+|++|+..+++++++ .|++ ...+.+++.+|..+|+|++|+.++++++... |+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 445555666778899999999999999986 3444 4688999999999999999999999998652 44
Q ss_pred c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCChHHHHHHHHHH
Q 013459 393 N---VKAYLRRGTAREMLGYYKEAIEDFSYALVL-----EPTNKRASLSADRLR 438 (442)
Q Consensus 393 ~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~ 438 (442)
+ ...++++|.+|..+|++++|+.+|++++++ .|+++.....+..+.
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~ 420 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE 420 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4 558899999999999999999999999975 677777665544443
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.77 E-value=2.9e-08 Score=72.06 Aligned_cols=72 Identities=17% Similarity=0.066 Sum_probs=66.8
Q ss_pred chHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Q 013459 322 QKQSAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 393 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 393 (442)
.|.++..+..+|..++..++ .++|..+++++++++|++..+++.+|..+++.|+|++|+..|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 46778899999999986665 7999999999999999999999999999999999999999999999999874
No 202
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.76 E-value=6.1e-08 Score=95.07 Aligned_cols=112 Identities=13% Similarity=0.048 Sum_probs=102.1
Q ss_pred chHHHHHHHHHHHHHHh-------cccHH-------HHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYK-------DKQWL-------KAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEADCTKA 386 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 386 (442)
.|.....|+..|..+.+ .|+++ +|+..|+++++ +.|++..+|..++.++.+.|++++|...|+++
T Consensus 268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a 347 (530)
T 2ooe_A 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 347 (530)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 37778999999999986 78887 99999999997 89999999999999999999999999999999
Q ss_pred HhcCCccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459 387 INLDKKNV-KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 433 (442)
Q Consensus 387 l~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 433 (442)
++++|.++ .+|..++.++...|++++|.+.|+++++..|.+...+..
T Consensus 348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 395 (530)
T 2ooe_A 348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395 (530)
T ss_dssp HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence 99999986 699999999999999999999999999998887665543
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.76 E-value=4.1e-08 Score=94.29 Aligned_cols=111 Identities=8% Similarity=-0.039 Sum_probs=94.0
Q ss_pred ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
...++|..+..+.++|..|..+|+|++|+.++++++++ .|++ ...++++|.+|..+|+|++|+..|++++.+
T Consensus 343 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 343 FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35677899999999999999999999999999999986 3444 567899999999999999999999999875
Q ss_pred -----CCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 013459 390 -----DKKN---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428 (442)
Q Consensus 390 -----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 428 (442)
.|++ .+...+++.++.+++.|++|...|+++.+..-+|.
T Consensus 423 ~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~ 469 (490)
T 3n71_A 423 LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQ 469 (490)
T ss_dssp HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3554 45667889999999999999999999877543333
No 204
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.74 E-value=3.8e-08 Score=76.15 Aligned_cols=80 Identities=18% Similarity=0.070 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------hHHH
Q 013459 359 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN-------KRAS 431 (442)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~ 431 (442)
....++.+|.++...|++++|+..|++++..+|.+..+++.+|.++...|++++|+.++++++++.|++ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999877 7777
Q ss_pred HHHHHHH
Q 013459 432 LSADRLR 438 (442)
Q Consensus 432 ~~l~~~~ 438 (442)
..++.+.
T Consensus 83 ~~la~~~ 89 (131)
T 1elr_A 83 ARIGNSY 89 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 205
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.74 E-value=9.2e-08 Score=71.26 Aligned_cols=80 Identities=14% Similarity=0.033 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459 361 TYYSNRAAAYLESGSFLQAEADCTKAINLD-------KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 433 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 433 (442)
.-++.+|..+++.++|.+|+.+|+++++.. +....++..+|.++.++|++++|+.+++++++++|++..+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 457889999999999999999999999863 3457899999999999999999999999999999999999888
Q ss_pred HHHHHhh
Q 013459 434 ADRLRKV 440 (442)
Q Consensus 434 l~~~~~~ 440 (442)
+..+++.
T Consensus 86 ~~~~~~~ 92 (104)
T 2v5f_A 86 LKYFEYI 92 (104)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8766654
No 206
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.60 E-value=6.7e-07 Score=83.23 Aligned_cols=98 Identities=12% Similarity=-0.004 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-----cHH
Q 013459 329 AKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-----NVK 395 (442)
Q Consensus 329 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~ 395 (442)
+..+|..+...|+|++|+.+|++++++. |....++.++|.++...|++++|+.++++++.+.+. ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 4445555555555555555555555442 112234444555555555555555555555544332 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
++..+|.++...|++++|..++++++.+.+.
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 4444555555555555555555555555433
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.60 E-value=3.1e-07 Score=79.84 Aligned_cols=86 Identities=14% Similarity=0.119 Sum_probs=79.1
Q ss_pred cHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHH-cCCHH
Q 013459 341 QWLKAISFYTEAIKLNGN--NATYYSNRAAAYLES-----GSFLQAEADCTKAINLDKKN-VKAYLRRGTAREM-LGYYK 411 (442)
Q Consensus 341 ~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~-----~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~-~~~~~ 411 (442)
...+|...++++++++|+ +..+|..+|.+|.+. |+.++|.++|+++++++|+. ..+++.+|..+.. .++++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 568899999999999999 566999999999996 99999999999999999975 9999999999877 59999
Q ss_pred HHHHHHHHHHhhCCC
Q 013459 412 EAIEDFSYALVLEPT 426 (442)
Q Consensus 412 ~A~~~~~~~l~~~p~ 426 (442)
+|.+++++++..+|.
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999999998876
No 208
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=4.1e-07 Score=71.32 Aligned_cols=80 Identities=14% Similarity=0.016 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLN-G-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
...+..++.|.++.+++ ++++++.++++.++.+ | ++.+++|++|..|+++++|++|.++++++++.+|+|.++..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 46788999999999988 8889999999999998 6 56899999999999999999999999999999999998876
Q ss_pred HHHHH
Q 013459 399 RRGTA 403 (442)
Q Consensus 399 ~~a~~ 403 (442)
.+-.+
T Consensus 110 Lk~~i 114 (152)
T 1pc2_A 110 LERLI 114 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 209
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.59 E-value=3.5e-07 Score=88.70 Aligned_cols=108 Identities=17% Similarity=0.098 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHH
Q 013459 325 SAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAY 397 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~ 397 (442)
...+++.+|..+...| ++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++.. ++.++
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~ 402 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQ 402 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHH
Confidence 4567888888888755 899999999999887 578899999999998 899999999999998864 68899
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhhCCC---ChHHHHHHHH
Q 013459 398 LRRGTAREM----LGYYKEAIEDFSYALVLEPT---NKRASLSADR 436 (442)
Q Consensus 398 ~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~ 436 (442)
+++|.+|.. .+++++|.++|+++++.+|+ ++.+...++.
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKK 448 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHh
Confidence 999999998 89999999999999999854 6666665543
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.55 E-value=1.5e-06 Score=78.81 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhc---ccHHHHHHHHHHHHhhCCCCHHHHHHHHHH---------------------------------
Q 013459 326 AEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAA--------------------------------- 369 (442)
Q Consensus 326 ~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~--------------------------------- 369 (442)
+-.++.+|..++.. .++.+|+.+|+++++++|++..++..++.+
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~ 275 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 275 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence 34456667777654 456889999999999999887666654443
Q ss_pred -----------HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459 370 -----------YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 370 -----------~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
+...|++++|+..+++++.++| +..+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 3446899999999999999986 4677788899999999999999999999999997753
No 211
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.55 E-value=5.4e-07 Score=83.89 Aligned_cols=103 Identities=14% Similarity=0.041 Sum_probs=88.9
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-----TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--- 393 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--- 393 (442)
.......+..+|..++..|++++|+..+++++...|.+. .++..+|.++...|++++|+..+++++.+.+..
T Consensus 10 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 10 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 344567788899999999999999999999999887653 267889999999999999999999999876543
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 394 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 394 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
..++.++|.++...|++++|++++++++++.
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 123 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 123 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 2347789999999999999999999999875
No 212
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.54 E-value=8.2e-07 Score=85.09 Aligned_cols=105 Identities=13% Similarity=0.028 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh----cCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 328 IAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAYLES----GSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 328 ~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
+++.+|..+...| ++++|+..|+++.+..+.....++++|.+|... +++++|+.+|+++. |.++.+++++
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 4555555555555 555555555555555555555555555555433 45555555555554 5555555555
Q ss_pred HHH-H--HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 401 GTA-R--EMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 401 a~~-~--~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
|.+ + ...+++++|+++|+++.+. +++.++..++.+
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~ 292 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKL 292 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 555 2 2445555555555555533 244455444444
No 213
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.53 E-value=1.8e-06 Score=83.71 Aligned_cols=110 Identities=15% Similarity=-0.016 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHH
Q 013459 324 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVK 395 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~ 395 (442)
..+.+++.+|..|.. .+++++|+..|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++... .++.
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 148 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS 148 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 456788999999999 99999999999999875 578899999999998 88999999999999875 5788
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 396 AYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 396 ~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
+++.+|.+|.. .+++++|+++|+++.+. ++..++..++.+..
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 194 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYS 194 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Confidence 99999999998 88999999999999886 57888888887754
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.48 E-value=1.7e-06 Score=67.98 Aligned_cols=93 Identities=19% Similarity=0.059 Sum_probs=81.5
Q ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----cCCHHHHH
Q 013459 339 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM----LGYYKEAI 414 (442)
Q Consensus 339 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~ 414 (442)
.+++++|+..|+++.+.... .+. +|.+|...+.+++|+++|+++.+. .++.+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 36899999999999998743 444 999999999999999999999986 678999999999999 89999999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHh
Q 013459 415 EDFSYALVLEPTNKRASLSADRLRK 439 (442)
Q Consensus 415 ~~~~~~l~~~p~~~~~~~~l~~~~~ 439 (442)
++|+++.+. .++.+...++.+..
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQY 104 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHH
Confidence 999999987 67888888887753
No 215
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.47 E-value=1.1e-06 Score=84.08 Aligned_cols=108 Identities=14% Similarity=0.040 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHH-H--HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhcCCccH
Q 013459 323 KQSAEIAKEKGNQ-A--YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-----SFLQAEADCTKAINLDKKNV 394 (442)
Q Consensus 323 ~~~~~~~~~~a~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~l~~~p~~~ 394 (442)
+..+.+++.+|.. + ...+++++|+..|+++.+. .++.+++++|.+|. .| ++++|+.+|+++. +.++
T Consensus 245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~ 318 (452)
T 3e4b_A 245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREV 318 (452)
T ss_dssp GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCH
Confidence 4445556666665 3 3456666666666666644 35666666666665 44 6666666666666 5666
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 395 KAYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 395 ~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
.+++++|.+|.. ..++++|.++|+++.+. +++.+...++.+.
T Consensus 319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y 364 (452)
T 3e4b_A 319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLF 364 (452)
T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 666666666654 23666666666666553 3455555555543
No 216
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.46 E-value=2.8e-06 Score=75.60 Aligned_cols=112 Identities=8% Similarity=-0.113 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC----CHHHHHHH--HHHHHHhc--CHHHHHHHHHHHHhcCCc--
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNR--AAAYLESG--SFLQAEADCTKAINLDKK-- 392 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~--~~~~~~~~--~~~~A~~~~~~~l~~~p~-- 392 (442)
+...+.+...+.++.+.|+.+.|.+.+++..+.+|+ +......+ +.+.+..| ++++|...|+++....|+
T Consensus 133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~ 212 (310)
T 3mv2_B 133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK 212 (310)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH
T ss_pred cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc
Confidence 377888999999999999999999999999999883 23334444 44466667 899999999999888886
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCChHHHHHHHHH
Q 013459 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVL----------EPTNKRASLSADRL 437 (442)
Q Consensus 393 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----------~p~~~~~~~~l~~~ 437 (442)
....+++ ++..+|++++|.+.++++++. +|+++.+..++..+
T Consensus 213 ~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l 264 (310)
T 3mv2_B 213 TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITL 264 (310)
T ss_dssp HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHH
T ss_pred cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHH
Confidence 3445554 899999999999999988877 48898888666444
No 217
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.40 E-value=6.7e-06 Score=62.06 Aligned_cols=84 Identities=13% Similarity=-0.034 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 013459 358 NNATYYSNRAAAYLESGS---FLQAEADCTKAINLDKK-NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 433 (442)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 433 (442)
-.....+++|.++.+..+ ..+++..++..++.+|. ..+.+|.+|..+.++|+|++|.++.+.+++.+|+|..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 356888889999988775 45789999999988884 47899999999999999999999999999999999999888
Q ss_pred HHHHHhhh
Q 013459 434 ADRLRKVF 441 (442)
Q Consensus 434 l~~~~~~~ 441 (442)
...+++.+
T Consensus 118 k~~Ie~ki 125 (134)
T 3o48_A 118 KSMVEDKI 125 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776543
No 218
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.38 E-value=3.2e-06 Score=75.29 Aligned_cols=104 Identities=9% Similarity=-0.018 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcc--cHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------CCcc
Q 013459 328 IAKEKGNQAYKDK--QWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINL----------DKKN 393 (442)
Q Consensus 328 ~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----------~p~~ 393 (442)
.....+.+.+..| ++++|...|+++.+..|+ ....+++ +++++|++++|.+.++++++. +|++
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 3444455566666 999999999999988886 2334444 899999999999999988876 4889
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459 394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR 436 (442)
Q Consensus 394 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 436 (442)
+.++.++..+...+|+ +|.++++++.+.+|+++-+.....+
T Consensus 255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k 295 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEI 295 (310)
T ss_dssp HHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHH
Confidence 9999999999999998 8999999999999999987665443
No 219
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.38 E-value=1.3e-05 Score=61.28 Aligned_cols=85 Identities=13% Similarity=-0.038 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 013459 357 GNNATYYSNRAAAYLESGS---FLQAEADCTKAINLDKK-NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 432 (442)
Q Consensus 357 p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 432 (442)
.......++++.++.+..+ ..+++..++..++.+|. ..+.+|.+|..++++|+|++|.++.+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4567889999999999876 45899999999998884 5789999999999999999999999999999999999988
Q ss_pred HHHHHHhhh
Q 013459 433 SADRLRKVF 441 (442)
Q Consensus 433 ~l~~~~~~~ 441 (442)
....+++.+
T Consensus 116 Lk~~Ie~~i 124 (144)
T 1y8m_A 116 LKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776543
No 220
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.26 E-value=1e-05 Score=84.85 Aligned_cols=94 Identities=14% Similarity=0.078 Sum_probs=74.3
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---------
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--------- 392 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--------- 392 (442)
......+|+++|..+.+.|++++|+..|.++ +++..|.+.+.++.+.|+|++|+++|.++.+..++
T Consensus 1101 rvn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1101 RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIF 1175 (1630)
T ss_pred hcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHH
Confidence 3456788999999999999999999999886 78899999999999999999999999887654422
Q ss_pred ------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013459 393 ------------------NVKAYLRRGTAREMLGYYKEAIEDFSYA 420 (442)
Q Consensus 393 ------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 420 (442)
+...++.+|..+.+.|+|++|..+|.++
T Consensus 1176 aYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 2234556777777777777777776665
No 221
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.20 E-value=1e-05 Score=63.73 Aligned_cols=112 Identities=11% Similarity=0.056 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---C--
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---------TYYSNRAAAYLESGSFLQAEADCTKAINLD---K-- 391 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p-- 391 (442)
-..++.....++..+.|+.|+-+.+.++.+..++. .++..+|..++..++|..|...|++++++. +
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 34577888899999999999999998777643333 377889999999999999999999987542 1
Q ss_pred --------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 392 --------------------KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 392 --------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
.+.+..|.++.||.+++++++|+..++..- ..-..+.+...++++.
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence 112688999999999999999999876532 2234566666666664
No 222
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.13 E-value=1.8e-05 Score=82.90 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---------------
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK--------------- 391 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--------------- 391 (442)
..+..+|..++..|+|++|+.+|+++ ..|..++.++.++|++++|++.++++.....
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence 45678999999999999999999996 4788999999999999999999999855433
Q ss_pred ----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 392 ----------KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 392 ----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
.+++.+..++..|...|.|++|+..+++++.+++.+...+..++.+.
T Consensus 1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLy 1324 (1630)
T 1xi4_A 1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHH
Confidence 13445556777889999999999999999999999888887777665
No 223
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.11 E-value=1.5e-05 Score=74.38 Aligned_cols=103 Identities=16% Similarity=0.066 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 406 (442)
..|..+|.++.+.|+|++|++.|.++ .++..|...+.++...|+|+.|..+..+ +..+|++ ...+..+|.+
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek 219 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQD 219 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHH
Confidence 46888999999999999999999999 4788899999999999999999877765 3355554 4457788999
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 013459 407 LGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438 (442)
Q Consensus 407 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 438 (442)
.|++++|+.++++++.+++....++..++.+.
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~ 251 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTELAILY 251 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999888887765
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.09 E-value=1.5e-05 Score=75.23 Aligned_cols=89 Identities=11% Similarity=0.023 Sum_probs=72.7
Q ss_pred ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
...++|..+..+.++|..|..+|+|++|+.++++++++ .|++ ...++++|.+|..+|++++|+..|++++++
T Consensus 321 lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 321 LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999976 3444 467899999999999999999999999875
Q ss_pred -----CCccHH---HHHHHHHHHHH
Q 013459 390 -----DKKNVK---AYLRRGTAREM 406 (442)
Q Consensus 390 -----~p~~~~---~~~~~a~~~~~ 406 (442)
.|+++. .+.+++.+..+
T Consensus 401 ~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 401 MRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHH
Confidence 355543 44555555543
No 225
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.04 E-value=1.8e-05 Score=74.65 Aligned_cols=79 Identities=14% Similarity=0.088 Sum_probs=68.0
Q ss_pred ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
...++|..+..+.++|..|..+|+|++|+.++++++++ .|++ ...++++|.+|..+|++++|+..|++++++
T Consensus 332 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 332 FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999986 3444 567999999999999999999999999876
Q ss_pred -----CCccHHH
Q 013459 390 -----DKKNVKA 396 (442)
Q Consensus 390 -----~p~~~~~ 396 (442)
.|+++..
T Consensus 412 ~~~~lG~~Hp~~ 423 (433)
T 3qww_A 412 MEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTCTTCHHH
T ss_pred HHHHcCCCChHH
Confidence 3555543
No 226
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=4.6e-05 Score=72.15 Aligned_cols=103 Identities=9% Similarity=-0.021 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------C
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINL------D 390 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~ 390 (442)
.........++..+...+++++|+.++++++...+. ...++.++|.+|...|+|++|+..+++++.. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 344556777888888999999999999999876332 2578889999999999999999999998865 3
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 391 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
+...+++..++.+|..+|++++|...+++++...+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 44577999999999999999999999999998754
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.97 E-value=4.6e-05 Score=57.42 Aligned_cols=80 Identities=11% Similarity=-0.025 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHhcccHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLK---AISFYTEAIKLN-G-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 398 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 398 (442)
...+..++.|.++.++.+..+ ++.+++..+..+ | ..-+.++.+|..++++|+|.+|.++++.+++..|+|.++.-
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 556889999999999886666 999999999876 4 45689999999999999999999999999999999998876
Q ss_pred HHHHH
Q 013459 399 RRGTA 403 (442)
Q Consensus 399 ~~a~~ 403 (442)
....+
T Consensus 113 Lk~~i 117 (126)
T 1nzn_A 113 LERLI 117 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 228
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=5.7e-05 Score=71.50 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---cc
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK---KN 393 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p---~~ 393 (442)
...+..+..+|..+...|+|++|+..+++++... +....++..++.+|..+|++++|...+++++...+ +.
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 211 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP 211 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc
Confidence 4467889999999999999999999999998762 22357899999999999999999999999987642 21
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 394 ----VKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 394 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
...+..+|..+...++|++|..+|.++++..
T Consensus 212 ~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 212 TQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 3466778899999999999999999998753
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.80 E-value=0.00019 Score=54.23 Aligned_cols=80 Identities=8% Similarity=0.003 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
..+..++.|.++.++. +..+++.+++..++.+|. ..+.++.+|..++++|+|++|.++.+.+++..|+|.++.-..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 4578888899998876 456799999999998884 468999999999999999999999999999999999887655
Q ss_pred HHHH
Q 013459 401 GTAR 404 (442)
Q Consensus 401 a~~~ 404 (442)
..+-
T Consensus 119 ~~Ie 122 (134)
T 3o48_A 119 SMVE 122 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 230
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.80 E-value=7.6e-05 Score=67.73 Aligned_cols=74 Identities=16% Similarity=0.034 Sum_probs=66.8
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 395 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 395 (442)
..+..+..+..++..++..|++++|+..+++++.++| +..++..+|.++...|++++|+..|++++.++|....
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 3467788888899999999999999999999999996 4778889999999999999999999999999998754
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.71 E-value=0.00041 Score=53.11 Aligned_cols=80 Identities=8% Similarity=0.001 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 399 (442)
...+..|+.|.++.++. +..+++.+++..+...|. .-+.++.+|..++++|+|++|.++++.+|+..|+|.++...
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 45678889999999877 446799999999998885 46789999999999999999999999999999999888765
Q ss_pred HHHH
Q 013459 400 RGTA 403 (442)
Q Consensus 400 ~a~~ 403 (442)
...+
T Consensus 117 k~~I 120 (144)
T 1y8m_A 117 KSMV 120 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 232
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.57 E-value=0.00052 Score=68.53 Aligned_cols=114 Identities=6% Similarity=-0.156 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
...+|...+....+.++.+.|...|.+|++. .+.....|...+.+..+.++ ++.|.+.|+++++..|+++..|..++.
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 4457888888888889999999999999987 44456777777777777654 899999999999999999998888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHH
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPT---NKRASLSADRLR 438 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~ 438 (442)
.....|+.+.|...|++++...|+ ...++......+
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFE 551 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 888899999999999999998884 344555544443
No 233
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.56 E-value=0.0006 Score=68.11 Aligned_cols=111 Identities=13% Similarity=-0.026 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-----------CC-----------CHHHHHHHHHHHHHhcCHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-----------GN-----------NATYYSNRAAAYLESGSFLQAE 380 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------p~-----------~~~~~~~~~~~~~~~~~~~~A~ 380 (442)
|.....+...+......|++++|...|+++++.- |. ...+|...+.+....++.+.|.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 3334444455555555555555555555555431 21 1224444444444455555555
Q ss_pred HHHHHHHhc-CCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCChHHHHH
Q 013459 381 ADCTKAINL-DKKNVKAYLRRGTAREMLG-YYKEAIEDFSYALVLEPTNKRASLS 433 (442)
Q Consensus 381 ~~~~~~l~~-~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~ 433 (442)
+.|.++++. .+.....|...+.+-.+.+ +++.|.+.|+++++..|+++..+..
T Consensus 455 ~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~ 509 (679)
T 4e6h_A 455 KIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINK 509 (679)
T ss_dssp HHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHH
Confidence 555555544 2223344444444433332 2555555555555555555555433
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.54 E-value=0.00022 Score=62.03 Aligned_cols=70 Identities=10% Similarity=-0.015 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCcc
Q 013459 324 QSAEIAKEKGNQAYKD-----KQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKN 393 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~~ 393 (442)
.+..++..+|..|.+. |+.++|.++|+++++++|+. ...++.+|..+.. .++++++.+.+++++..+|..
T Consensus 197 ~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 197 QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 3677999999999995 99999999999999999975 9999999999988 499999999999999998864
No 235
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.53 E-value=9.4e-05 Score=69.00 Aligned_cols=87 Identities=15% Similarity=0.173 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 406 (442)
..|..+|..++..|+|++|+.+|.++ ..|..++.|+.++|+|++|++.++++ .++..|.....++..
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD 189 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence 48999999999999999999999977 45788999999999999999999999 478999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCC
Q 013459 407 LGYYKEAIEDFSYALVLEPTN 427 (442)
Q Consensus 407 ~~~~~~A~~~~~~~l~~~p~~ 427 (442)
.|+++.|..+..+ +..+|++
T Consensus 190 ~~ef~lA~~~~l~-L~~~ad~ 209 (449)
T 1b89_A 190 GKEFRLAQMCGLH-IVVHADE 209 (449)
T ss_dssp TTCHHHHHHTTTT-TTTCHHH
T ss_pred cCcHHHHHHHHHH-HHhCHhh
Confidence 9999999877665 3344443
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.51 E-value=0.0017 Score=50.10 Aligned_cols=109 Identities=15% Similarity=-0.112 Sum_probs=88.7
Q ss_pred chHHHHHHHHHHHHHHhcccH------HHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQW------LKAISFYTEAIKLNGNN--------ATYYSNRAAAYLESGSFLQAEADCTKAI 387 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~~~~~~~~~~~~~~A~~~~~~~l 387 (442)
.|.+.+.|.......-+.|+. ++-.+.|++++..-|.. ...|...+.. ...++.++|...|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 356677788777777777877 78888999999876642 3455566654 56799999999999999
Q ss_pred hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 013459 388 NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS 431 (442)
Q Consensus 388 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 431 (442)
++.......|...|.--..+|+...|.+.+.+++.+.|...+..
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 88877888998899988899999999999999999999877654
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.14 E-value=0.0054 Score=48.33 Aligned_cols=81 Identities=16% Similarity=0.097 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC---C----------------------CHHHHHHHHHHHHHhcCHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---N----------------------NATYYSNRAAAYLESGSFL 377 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~----------------------~~~~~~~~~~~~~~~~~~~ 377 (442)
....+.+..+|..++..++|.+|...|+++++... . +.+..+.++.||.++++++
T Consensus 60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~ 139 (167)
T 3ffl_A 60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK 139 (167)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence 45678899999999999999999999999987521 1 1268899999999999999
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHH
Q 013459 378 QAEADCTKAINLDKKNVKAYLRRGTAR 404 (442)
Q Consensus 378 ~A~~~~~~~l~~~p~~~~~~~~~a~~~ 404 (442)
+|+..++..-. ....++....+|..|
T Consensus 140 ~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 140 DAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred HHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 99999876522 234577777788766
No 238
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.89 E-value=0.017 Score=55.46 Aligned_cols=111 Identities=9% Similarity=-0.090 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHH----------------------------------
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAA---------------------------------- 368 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~---------------------------------- 368 (442)
|.....|...+..+...|+.++|...|++++.. |.+...+...+.
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence 555788999999999999999999999999999 987554443332
Q ss_pred ------HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459 369 ------AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-YYKEAIEDFSYALVLEPTNKRASLSAD 435 (442)
Q Consensus 369 ------~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~ 435 (442)
...+.++.+.|...|+++ +..+.....|...|..-...+ +.+.|.+.|+++++..|+++..+....
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yi 361 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 222456788899999999 433334566766676665555 699999999999999999887654433
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.84 E-value=0.023 Score=52.77 Aligned_cols=62 Identities=11% Similarity=-0.022 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013459 361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 422 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 422 (442)
.+...++..+...|++.+++..+++++..+|.+-.+|..+-.+|...|+..+|++.|+++.+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566788888999999999999999999999999999999999999999999998888654
No 240
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.60 E-value=0.075 Score=51.10 Aligned_cols=99 Identities=6% Similarity=-0.074 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRGT 402 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~ 402 (442)
+...|..+-..+.+.|++++|.++|++..+.. .-+...|..+-..|.+.|+.++|.+.|++..+.. ..+...|..+-.
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 45678889999999999999999999988753 2366788889999999999999999999988654 225667777888
Q ss_pred HHHHcCCHHHHHHHHHHHHhh
Q 013459 403 AREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~ 423 (442)
+|.+.|+.++|.+.|++..+.
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 241
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.56 E-value=0.039 Score=43.26 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--c---------------
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN--L--------------- 389 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~--------------- 389 (442)
+.-..++..++-.|+|..++-++.+ -+.....+-...||.++++|+.|+..++..+. .
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 3344567788889999999877653 24566777789999999999999999999982 2
Q ss_pred CCccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013459 390 DKKNVKAYLR-RGTAREMLGYYKEAIEDFSYALVLEPTN 427 (442)
Q Consensus 390 ~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 427 (442)
+|.+.+..++ +|.++.+.|+.++|+.++.......|=-
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf 147 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLF 147 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcccc
Confidence 3555665544 6999999999999999999988877643
No 242
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.49 E-value=0.05 Score=52.29 Aligned_cols=95 Identities=9% Similarity=-0.125 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
....|...+....+.++.+.|...|+++ ...+.....|...+......+ +++.|.+.|+++++..|+++..|..++..
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3467888888888888999999999999 443345667777777777766 59999999999999999888888888888
Q ss_pred HHHcCCHHHHHHHHHHH
Q 013459 404 REMLGYYKEAIEDFSYA 420 (442)
Q Consensus 404 ~~~~~~~~~A~~~~~~~ 420 (442)
....|+.+.|...|+++
T Consensus 364 e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHTCHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 88899999998888886
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.30 E-value=0.19 Score=38.81 Aligned_cols=87 Identities=14% Similarity=-0.028 Sum_probs=70.5
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 400 (442)
........|...|.. ...++.++|.+.|+.+++++...+.+|...|....++|+...|.+.+.+++.+.|...+. +..
T Consensus 56 ~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~ 133 (161)
T 4h7y_A 56 QNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEI 133 (161)
T ss_dssp TCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHH
T ss_pred cHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHH
Confidence 445667777777765 566999999999999999988889999999999999999999999999999999876554 344
Q ss_pred HHHHHHcCC
Q 013459 401 GTAREMLGY 409 (442)
Q Consensus 401 a~~~~~~~~ 409 (442)
+..-.+.|.
T Consensus 134 a~~nl~~~~ 142 (161)
T 4h7y_A 134 ALRNLNLQK 142 (161)
T ss_dssp HHHHHHTTC
T ss_pred HHHhhhcCC
Confidence 544455543
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.013 Score=58.56 Aligned_cols=80 Identities=11% Similarity=0.142 Sum_probs=63.1
Q ss_pred cHHHHHHHHHHHHhh--------CCCC----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 341 QWLKAISFYTEAIKL--------NGNN----------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 341 ~~~~A~~~~~~al~~--------~p~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
+--+|+.++.+.++. .+.+ ...+..-+..+...|+|+-|++..+++....|.....|+.|+.
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~ 379 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLAR 379 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 445677777777642 2222 2244445677778999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 013459 403 AREMLGYYKEAIEDFSYA 420 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~ 420 (442)
+|..+|+|+.|+-.++.+
T Consensus 380 vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 380 CHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccHHHHHHHHhcC
Confidence 999999999999877765
No 245
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.09 E-value=0.11 Score=44.55 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=54.6
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Q 013459 334 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 394 (442)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 394 (442)
..+++.++.++|++.....++.+|.|......+..++.-.|+|+.|.+.++.+.+++|...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 4577889999999999999999999999999999999999999999999999988887653
No 246
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.86 E-value=0.062 Score=51.23 Aligned_cols=81 Identities=20% Similarity=0.088 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 406 (442)
..+..+|....-...+..|..+|.+|+.+.|++-..++.+|.+....++.-+|+-+|-|++......+.+.-++...+.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 45667888888888899999999999999999999999999999999999999999999998777788888888887764
Q ss_pred c
Q 013459 407 L 407 (442)
Q Consensus 407 ~ 407 (442)
.
T Consensus 233 ~ 233 (497)
T 1ya0_A 233 A 233 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.041 Score=55.12 Aligned_cols=63 Identities=10% Similarity=0.058 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 386 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 386 (442)
.....+...+..+...|+|+-|+++.++++...|.+...|+.|+.||.++|+|+.|+-.+.-+
T Consensus 335 ~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 335 CMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344577888999999999999999999999999999999999999999999999999877654
No 248
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.96 E-value=0.17 Score=48.29 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY 370 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 370 (442)
|.....++++|..+...+++-+|+-+|.+++......+.+..++...+
T Consensus 183 P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 183 PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 444555555555555555555555555555555444555555554443
No 249
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.85 E-value=1.1 Score=35.24 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh--h---------------CCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK--L---------------NGNNAT-YYSNRAAAYLESGSFLQAEADCTKA 386 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~---------------~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~ 386 (442)
.+...+..+.|+.+.++|..|+..+++.+. . +|.+.+ .+..+|.++.+.|+-+||+.++.+.
T Consensus 61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 456677789999999999999999999993 2 234444 4556799999999999999999987
Q ss_pred HhcC
Q 013459 387 INLD 390 (442)
Q Consensus 387 l~~~ 390 (442)
...+
T Consensus 141 f~~~ 144 (242)
T 3kae_A 141 FGKS 144 (242)
T ss_dssp HHHC
T ss_pred cCCc
Confidence 6654
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.25 Score=46.44 Aligned_cols=103 Identities=10% Similarity=-0.104 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccH----H
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLD--KKNV----K 395 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~----~ 395 (442)
....+..+|..+++.|++++|.+.|.++...... -.+.+.....++...++|..+...+.++..+. ..++ .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 3456788999999999999999999999876432 35778888899999999999999999986552 1122 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013459 396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427 (442)
Q Consensus 396 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 427 (442)
.....|.++...++|.+|.++|..++......
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~ 241 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATFTSI 241 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccCCcc
Confidence 34456777888999999999999988765443
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.44 E-value=0.41 Score=44.03 Aligned_cols=98 Identities=12% Similarity=0.022 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---Ccc----H
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNG--NN----ATYYSNRAAAYLESGSFLQAEADCTKAINLD---KKN----V 394 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~----~ 394 (442)
.-..+|..|+..|+|.+|.+.+.+..+.-. ++ .+.+..-..+|..++++.++...+.++.... +.+ .
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 345789999999999999999998887422 12 3567777889999999999999999886543 111 2
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Q 013459 395 KAYLRRGTARE-MLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 395 ~~~~~~a~~~~-~~~~~~~A~~~~~~~l~~~p 425 (442)
.....-|..+. ..++|.+|..+|-++++...
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 34455688888 89999999999999886544
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.32 E-value=0.19 Score=43.07 Aligned_cols=69 Identities=19% Similarity=0.088 Sum_probs=61.3
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 013459 369 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437 (442)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 437 (442)
-+++.++.++|++.+...++.+|.|......+-+.+.-.|+++.|.+.++.+.+++|+.......+..+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l 74 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL 74 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999987765444433
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.20 E-value=0.17 Score=46.75 Aligned_cols=62 Identities=10% Similarity=-0.041 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 388 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 388 (442)
.+...++..+...|++.+|+..+++++..+|-+..++..+-.++...|+..+|++.|+++.+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566788889999999999999999999999999999999999999999999999998754
No 254
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=94.18 E-value=0.5 Score=45.35 Aligned_cols=85 Identities=11% Similarity=-0.015 Sum_probs=70.0
Q ss_pred cccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHcCCHHHHHHH
Q 013459 339 DKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRGTAREMLGYYKEAIED 416 (442)
Q Consensus 339 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~ 416 (442)
.++.++|.++|++..+.. .-+...|..+...|.+.|++++|.+.|++..+.. ..+...|..+-..|.+.|+.++|.+.
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 456889999999887653 2366788999999999999999999999987653 23566777778889999999999999
Q ss_pred HHHHHhh
Q 013459 417 FSYALVL 423 (442)
Q Consensus 417 ~~~~l~~ 423 (442)
|++..+.
T Consensus 163 ~~~M~~~ 169 (501)
T 4g26_A 163 DAHMVES 169 (501)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9998764
No 255
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.17 E-value=0.073 Score=50.42 Aligned_cols=107 Identities=13% Similarity=0.027 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHH----------HHHHHHh-----hCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAIS----------FYTEAIK-----LNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAI 387 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~----------~~~~al~-----~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l 387 (442)
-.+..|+.....+-..|+..+... .+-.++. .+++. ...++.+-..|.+.+.|++|.+...+..
T Consensus 179 l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 179 INAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp ------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc
Confidence 355667766666666665544321 1222221 12222 4567777899999999999999999985
Q ss_pred hcCC--cc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 013459 388 NLDK--KN---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430 (442)
Q Consensus 388 ~~~p--~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 430 (442)
-... .+ ...+|.+|.++.-+++|.+|.+++..|+...|.+..+
T Consensus 259 fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a 306 (523)
T 4b4t_S 259 YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS 306 (523)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSC
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhh
Confidence 3211 12 4567888999999999999999999999998876543
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.03 E-value=1.5 Score=41.23 Aligned_cols=106 Identities=12% Similarity=0.050 Sum_probs=80.3
Q ss_pred ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-C-CCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHh---
Q 013459 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-N-GNN----ATYYSNRAAAYLESGSFLQAEADCTKAIN--- 388 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~-p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--- 388 (442)
+..-....+.....++..+...|+|.+|...+.....- . ..+ ...+.....+|...+++.+|...+.++..
T Consensus 129 kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~ 208 (445)
T 4b4t_P 129 KIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF 208 (445)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc
Confidence 34334556777888999999999999999999887532 1 111 35677778899999999999999998742
Q ss_pred cCCcc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 389 LDKKN----VKAYLRRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 389 ~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
-.+.. ...+...|..+...++|.+|.++|..+++.
T Consensus 209 ~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 209 KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 12222 345566788999999999999999998865
No 257
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.49 E-value=1.5 Score=45.30 Aligned_cols=102 Identities=6% Similarity=-0.139 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL----NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAY 397 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~ 397 (442)
......|..+-..+.+.|+.++|..+|++.-+. -.-+...|+.+-..|.+.|++++|.+.|++..+.. ..|.-.|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 345567888999999999999999999775432 23467889999999999999999999999987653 2245555
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhhC
Q 013459 398 LRRGTAREMLGY-YKEAIEDFSYALVLE 424 (442)
Q Consensus 398 ~~~a~~~~~~~~-~~~A~~~~~~~l~~~ 424 (442)
..+-.++.+.|+ .++|.+.|++..+..
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 566667888887 578889999887653
No 258
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.77 E-value=0.82 Score=36.57 Aligned_cols=19 Identities=16% Similarity=-0.095 Sum_probs=12.4
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 013459 402 TAREMLGYYKEAIEDFSYA 420 (442)
Q Consensus 402 ~~~~~~~~~~~A~~~~~~~ 420 (442)
.++..+|+++++++.|.+.
T Consensus 97 ~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 97 LNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHC
Confidence 3456677777777776553
No 259
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.28 E-value=0.6 Score=47.59 Aligned_cols=80 Identities=20% Similarity=0.078 Sum_probs=50.6
Q ss_pred HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHH----
Q 013459 335 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--------DKKNVKAYLRRGT---- 402 (442)
Q Consensus 335 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~---- 402 (442)
.++..|++++|.+..+ .-++...|..+|..+.+.++++.|+++|.++-.. ...+.+.+..++.
T Consensus 661 ~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 661 LALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666666666533 2356788999999999999999999999885221 1233333333332
Q ss_pred ---------HHHHcCCHHHHHHHHHH
Q 013459 403 ---------AREMLGYYKEAIEDFSY 419 (442)
Q Consensus 403 ---------~~~~~~~~~~A~~~~~~ 419 (442)
+|.++|++++|++.|.+
T Consensus 736 ~~~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 736 TGKFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCchHHHHHHHHHcCCHHHHHHHHHH
Confidence 45556667777666554
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.70 E-value=3.8 Score=37.62 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc----CC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCChHHHHHHH
Q 013459 365 NRAAAYLESGSFLQAEADCTKAINL----DK--KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE---PTNKRASLSAD 435 (442)
Q Consensus 365 ~~~~~~~~~~~~~~A~~~~~~~l~~----~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~ 435 (442)
.++..|+..|+|.+|.+.+.+.++- +. .-.+.+..-..+|..++++.++.+.+.++.... +.++.....+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 6899999999999999999887753 21 124677777889999999999999999987654 23444444433
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.49 E-value=2.8 Score=41.16 Aligned_cols=98 Identities=12% Similarity=-0.029 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 403 (442)
........++..++..+...++...+.+...... +......++...++.++++.|..++++.-..........|.+|.+
T Consensus 250 ~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra 328 (618)
T 1qsa_A 250 QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADL 328 (618)
T ss_dssp HHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHH
Confidence 3444555566666666745677777777665443 333344444455678999999999988766444568889999999
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 013459 404 REMLGYYKEAIEDFSYALV 422 (442)
Q Consensus 404 ~~~~~~~~~A~~~~~~~l~ 422 (442)
+..+|+.++|...|+++.+
T Consensus 329 ~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 329 LLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhc
Confidence 9999999999999999875
No 262
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.68 E-value=3 Score=33.29 Aligned_cols=29 Identities=10% Similarity=-0.096 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAI 353 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al 353 (442)
+...|..+|...+.+|+++-|+.+|.++-
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 34578888888888888888888887653
No 263
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=89.48 E-value=3.7 Score=41.65 Aligned_cols=86 Identities=19% Similarity=0.004 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA 396 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 396 (442)
+...|..+|..+.+.++++.|+++|.++-.. ...+.+.+..++....+.|+++.|...|.+.=+ .
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~-----~-- 752 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGD-----I-- 752 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----H--
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCC-----H--
Confidence 3568899999999999999999999986322 234445555666666666777766665544211 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 013459 397 YLRRGTAREMLGYYKEAIEDFS 418 (442)
Q Consensus 397 ~~~~a~~~~~~~~~~~A~~~~~ 418 (442)
...-.+|.+++++++|...-+
T Consensus 753 -~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 753 -QGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHHHHcCChHHHHHHHH
Confidence 112345777788887766544
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.88 E-value=1.8 Score=46.26 Aligned_cols=93 Identities=13% Similarity=0.064 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhh---C--------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIKL---N--------------------GNNATYYSNRAAAYLESGSFLQAEADCT 384 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~--------------------p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 384 (442)
..|.+|++++..|++++|..+|+++-.- + ......|+....++.+.+.++.+++..+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4588999999999999999999887321 0 0113456666778888899999999999
Q ss_pred HHHhcCC-ccH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013459 385 KAINLDK-KNV----KAYLRRGTAREMLGYYKEAIEDFSYA 420 (442)
Q Consensus 385 ~~l~~~p-~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~ 420 (442)
.|++..+ ++. ..|.++-..+.++++|++|...+...
T Consensus 924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 9997653 322 25677788889999999998776543
No 265
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=84.79 E-value=2.4 Score=39.75 Aligned_cols=64 Identities=9% Similarity=-0.060 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC--------Cc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC
Q 013459 364 SNRAAAYLESGSFLQAEADCTKAINLD--------KK--NVKAYLRRGTAREMLGYYKEAIEDFSYALVL-EPTN 427 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--------p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~ 427 (442)
..+-.+|+++++...|...++..-... |. ....+|.+|..+...++|.+|.+++.+|++. .|.+
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 345577888888877777775443221 21 2457778888888888888888888888888 7755
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.73 E-value=20 Score=31.55 Aligned_cols=95 Identities=11% Similarity=-0.072 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHhcC
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNNATYYSNRAAAYLESGS--------FLQAEADCTKAINLD 390 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~l~~~ 390 (442)
+-.+.++.-+..+++.|++.-|.++..-.++. .+-+......+..++..... .++|+++-.+.-...
T Consensus 51 eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~ 130 (312)
T 2wpv_A 51 HAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYK 130 (312)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCT
T ss_pred HHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCC
Confidence 34445555566666666666555543333322 12233344444444322211 233444433332222
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013459 391 KKNVKAYLRRGTAREMLGYYKEAIEDFS 418 (442)
Q Consensus 391 p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 418 (442)
-.+++.+..+|..|.+.+++.+|..+|-
T Consensus 131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 131 FGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3568899999999999999999998874
No 267
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.17 E-value=11 Score=39.32 Aligned_cols=95 Identities=15% Similarity=0.023 Sum_probs=70.9
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C--------------------
Q 013459 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-D-------------------- 390 (442)
Q Consensus 332 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~-------------------- 390 (442)
+...+...+.++-|. +.+..-|.++..-|.+|.+|...|++++|..+|+++-.- .
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 556677777777553 345667788888899999999999999999999986421 0
Q ss_pred Cc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHH
Q 013459 391 KK--NVKAYLRRGTAREMLGYYKEAIEDFSYALVLE-PTNKRA 430 (442)
Q Consensus 391 p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~ 430 (442)
+. ....|.....++.+.+-++.+++..+.|++.- ++++..
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l 934 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL 934 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccc
Confidence 11 12356667888999999999999999999754 455543
No 268
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.06 E-value=2.3 Score=40.38 Aligned_cols=69 Identities=13% Similarity=0.028 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 393 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 393 (442)
...+..+..+-+.|...+.|++|..+..++. .|.. ...++.+|.++.-.++|.+|.+++..|++..|.+
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 4567788888999999999999999999884 4432 3556678999999999999999999999876643
No 269
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.96 E-value=25 Score=31.26 Aligned_cols=40 Identities=13% Similarity=-0.042 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 013459 378 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417 (442)
Q Consensus 378 ~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~ 417 (442)
+|+++-.+.-...-.+++.+..+|..|.+.+++.+|..+|
T Consensus 120 ~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 120 EMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4444444322222356888899999999999999999887
No 270
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=82.78 E-value=14 Score=28.10 Aligned_cols=57 Identities=11% Similarity=-0.014 Sum_probs=46.8
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 368 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
......|+-++-.+.+...+.-++-+++.++.+|.+|.+.|+..+|.+.+.+|-+..
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 455677888888888888777777789999999999999999999999999987653
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.04 E-value=4.1 Score=38.03 Aligned_cols=66 Identities=14% Similarity=0.043 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 359 NATYYSNRAAAYLESGSFLQAEADCTKAINLD---KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
-..++..+|..|.+.|++++|.+.|.++.... ....+.++..-.++...+++..+...+.++..+.
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~ 198 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMI 198 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 34578889999999999999999999987653 3346788888999999999999999999987653
No 272
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.64 E-value=7.8 Score=41.31 Aligned_cols=92 Identities=16% Similarity=0.026 Sum_probs=68.3
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---C------------------
Q 013459 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL---D------------------ 390 (442)
Q Consensus 332 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~------------------ 390 (442)
+...+...++++-+.+ .+...+.++...+.+|.++...|++++|..+|+++-.- +
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 4455666777765544 33456778878899999999999999999999886321 0
Q ss_pred --CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013459 391 --KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427 (442)
Q Consensus 391 --p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 427 (442)
......|+....++.+.+.++.+++.-+.|++..+.+
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~ 932 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD 932 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC
Confidence 1123456667788899999999999999999876543
No 273
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=77.32 E-value=20 Score=28.04 Aligned_cols=63 Identities=8% Similarity=0.087 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHH---H---HHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYS---N---RAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~---~---~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
..-+..+..+|+.|+|=+|-+.++.+-...+.. ...+. . -|..+.+.|+.+-|...+++++..
T Consensus 33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 33 RRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345677889999999999999999998775543 22222 2 234567789999999999999763
No 274
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=77.13 E-value=8 Score=25.60 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=22.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 013459 400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD 435 (442)
Q Consensus 400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 435 (442)
+|..+...|++++|..+|-+|+...|+=.+....++
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q 58 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ 58 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566666666666666666666666666555544443
No 275
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=75.75 E-value=6.7 Score=25.96 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=25.7
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHH
Q 013459 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY 362 (442)
Q Consensus 330 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 362 (442)
..+|..+...|++++|..+|.+|+...|+-.+.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 357888888888888888888888887765443
No 276
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=74.81 E-value=15 Score=27.95 Aligned_cols=54 Identities=19% Similarity=-0.013 Sum_probs=37.0
Q ss_pred HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 013459 337 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390 (442)
Q Consensus 337 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 390 (442)
..+|+-++--+.+...+...+-++..+..++.+|.+.|+..+|...+.+|.+..
T Consensus 102 v~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 455666666666666555556667778888888888888888888887777643
No 277
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=73.34 E-value=6.4 Score=27.17 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK 354 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 354 (442)
.+..+-.++..+.+.|+|++||++..++..
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455666788999999999999888776653
No 278
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=73.31 E-value=19 Score=24.50 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 355 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 355 (442)
..+..+...|...=+.|+|++|+.+|.++++.
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555666677777777777777777776653
No 279
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=72.63 E-value=6.9 Score=38.78 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=24.1
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 013459 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG 374 (442)
Q Consensus 330 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 374 (442)
...|+..+..|+|..|.++.+.++..+|++..+...++.+|.++|
T Consensus 453 ~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 453 LEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555554444
No 280
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=71.52 E-value=10 Score=31.08 Aligned_cols=33 Identities=21% Similarity=0.117 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Q 013459 361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 393 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 393 (442)
...+.+|..++..++|.+|.+++..|++..|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 455666777777777777777777777766654
No 281
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=70.91 E-value=11 Score=30.85 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH
Q 013459 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA 360 (442)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 360 (442)
..+.....+.+|..++.+++|.+|.+.+.+|+...|...
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 346677889999999999999999999999999988764
No 282
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=69.95 E-value=23 Score=24.06 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 355 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 355 (442)
.+..+...|...=+.|+|++|+.+|.++++.
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455666677777777777777777776653
No 283
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=67.72 E-value=64 Score=28.35 Aligned_cols=100 Identities=16% Similarity=0.049 Sum_probs=55.2
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhCC----CCH----HH--------HHHHHHHH-HHhcCH-----HHHHHHHHHH-
Q 013459 330 KEKGNQAYKDKQWLKAISFYTEAIKLNG----NNA----TY--------YSNRAAAY-LESGSF-----LQAEADCTKA- 386 (442)
Q Consensus 330 ~~~a~~~~~~~~~~~A~~~~~~al~~~p----~~~----~~--------~~~~~~~~-~~~~~~-----~~A~~~~~~~- 386 (442)
.+.|..++..|++++|+..|+.++..-| ++. ++ -|.+|+.. ....+. ++-.+.++-+
T Consensus 106 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELAA 185 (320)
T 3mkr_B 106 LQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMAA 185 (320)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHH
Confidence 4558888899999999999999887543 121 11 11122111 111111 1211112211
Q ss_pred ----HhcCCccHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCChH
Q 013459 387 ----INLDKKNVKAYLRRGT-AREMLGYYKEAIEDFSYALVLEPTNKR 429 (442)
Q Consensus 387 ----l~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~l~~~p~~~~ 429 (442)
.++.|.+...-...|. ..++.++|..|...-++.+++.|....
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~ 233 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEV 233 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHH
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence 1223333222223333 457899999999999999999886443
No 284
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=61.54 E-value=87 Score=30.61 Aligned_cols=91 Identities=9% Similarity=-0.034 Sum_probs=64.1
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----------------------
Q 013459 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD---------------------- 390 (442)
Q Consensus 333 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---------------------- 390 (442)
+...++.++++.|...|++.-..........|-+|..+.++|+.++|...|+++.+..
T Consensus 292 ~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~ 371 (618)
T 1qsa_A 292 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKA 371 (618)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCC
Confidence 3445677999999988876654333456778888888889999999999888875421
Q ss_pred -Ccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 391 -KKN-----VKAYLRRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 391 -p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
+.. ....+..+..+...|....|...+...+..
T Consensus 372 ~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 000 012345567788888888888888877754
No 285
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=60.31 E-value=24 Score=24.13 Aligned_cols=33 Identities=18% Similarity=0.439 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 356 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 356 (442)
..+......|..+++.++|.+|..+|+++..+.
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 567778888899999999999999999987654
No 286
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=59.85 E-value=16 Score=25.24 Aligned_cols=29 Identities=31% Similarity=0.287 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 013459 360 ATYYSNRAAAYLESGSFLQAEADCTKAIN 388 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 388 (442)
+..+..++..+.+.|+|++||++.+++..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45667789999999999999998887653
No 287
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.64 E-value=76 Score=29.51 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=55.8
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh---hCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK---LNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
.+.....+.+....+.++..++|.+|...++++.. ..+..+ ..+...|..+...++|.+|-++|..++..
T Consensus 171 ~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 171 MEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34456788899999999999999999999998742 123332 45667789999999999999999988764
No 288
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=59.29 E-value=16 Score=24.96 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK 354 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 354 (442)
.+..+...|...-..|+|++|+.+|..+++
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555566666666677777666666665
No 289
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=59.13 E-value=15 Score=25.69 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 013459 365 NRAAAYLESGSFLQAEADCTKAINLDKK 392 (442)
Q Consensus 365 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 392 (442)
.+|..+...|+++.|+.+|-+|+...|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4555566666666666666666665543
No 290
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=59.04 E-value=40 Score=23.03 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 355 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 355 (442)
.+..+...|...-..|+|++|+.+|..+++.
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455666777777788888888887777754
No 291
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=57.07 E-value=15 Score=26.93 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK 354 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 354 (442)
.+..+...|...=..++|++|+.+|..+++
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 334444455555555566666555555544
No 292
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=56.96 E-value=46 Score=34.73 Aligned_cols=63 Identities=10% Similarity=-0.111 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 361 TYYSNRAAAYLESGSFLQAEADCTKAINL----DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
..|..+-..|.+.|+.++|...|+...+. -..+...|..+-..|.+.|+.++|.+.|++..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~ 194 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 45777889999999999999999765432 2336677777888899999999999999998764
No 293
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=56.63 E-value=13 Score=25.97 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=25.5
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 013459 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNN 359 (442)
Q Consensus 331 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 359 (442)
.+|..+...|+++.|+.+|.+|+...|+-
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 58999999999999999999999887653
No 294
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=55.85 E-value=3.1 Score=19.29 Aligned_cols=7 Identities=43% Similarity=1.047 Sum_probs=3.9
Q ss_pred CCCCChH
Q 013459 2 PGGSSSG 8 (442)
Q Consensus 2 ~GGSSgG 8 (442)
||||+++
T Consensus 9 pg~s~~s 15 (21)
T 3u85_B 9 PGTTGGG 15 (26)
T ss_pred CCcccCC
Confidence 5666543
No 295
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=54.77 E-value=51 Score=22.89 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 355 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 355 (442)
..+..+...|...-+.++|++|+.+|..+++.
T Consensus 13 ~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34455666666777777777777777766653
No 296
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=54.47 E-value=66 Score=28.74 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHH
Q 013459 363 YSNRAAAYLESGSFLQAEADCTK 385 (442)
Q Consensus 363 ~~~~~~~~~~~~~~~~A~~~~~~ 385 (442)
|..+|-++++.+++.+|++.+..
T Consensus 299 YtylgGy~yR~~~~reAl~~WA~ 321 (472)
T 3re2_A 299 YTYLGGYYYRKKKYYEAIASWVD 321 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhhhhhhhhcchHHHHHHHHHH
Confidence 33344445555555555554443
No 297
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.77 E-value=42 Score=34.94 Aligned_cols=52 Identities=8% Similarity=-0.096 Sum_probs=41.6
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013459 366 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 421 (442)
Q Consensus 366 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 421 (442)
+...+...+.++-+. ..+..-|.++-.-|.+|.+|...|++++|..+|+++-
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 555666788887653 3556667777778999999999999999999999865
No 298
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=51.68 E-value=35 Score=23.81 Aligned_cols=57 Identities=9% Similarity=-0.116 Sum_probs=35.2
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-H---HHHHH--HHHHHHhcCHHHHHHHHHHHHh
Q 013459 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-T---YYSNR--AAAYLESGSFLQAEADCTKAIN 388 (442)
Q Consensus 330 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~---~~~~~--~~~~~~~~~~~~A~~~~~~~l~ 388 (442)
+..|..+++.|+|=+|-+.++..-...|... . .+..+ |..+.+.|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3457778888888888888888876664421 1 22222 3334445665 6777776654
No 299
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=49.48 E-value=20 Score=24.03 Aligned_cols=30 Identities=7% Similarity=0.017 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL 355 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 355 (442)
......+|+.+...|+|+.|+.+|+.+++.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 334566788888888888888888888763
No 300
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=49.29 E-value=30 Score=24.51 Aligned_cols=81 Identities=12% Similarity=0.026 Sum_probs=44.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCH
Q 013459 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY 410 (442)
Q Consensus 331 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~ 410 (442)
++|..-.-...++||....+ .+...++..-+-..+...++..|+|++|....+... .++.--.++.|-.+.|-.
T Consensus 12 E~AL~gTG~H~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~ 85 (116)
T 2p58_C 12 EIALIGTGNHYHEEANCIAE-WLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLG 85 (116)
T ss_dssp HHHHHHHTTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCH
T ss_pred HHHHHHccchHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccH
Confidence 34444444556666655443 444444433344455666777788888776655443 222233355666677776
Q ss_pred HHHHHHH
Q 013459 411 KEAIEDF 417 (442)
Q Consensus 411 ~~A~~~~ 417 (442)
.++...+
T Consensus 86 s~le~rL 92 (116)
T 2p58_C 86 SALESRL 92 (116)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666555
No 301
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=48.82 E-value=85 Score=28.66 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013459 394 VKAYLRRGTAREMLGYYKEAIEDFSYALV 422 (442)
Q Consensus 394 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 422 (442)
.-.|..+|-.+++.+++.+|++++-.+-.
T Consensus 318 vYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 318 IYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 34444555566666666666666655543
No 302
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=47.48 E-value=1.5e+02 Score=26.12 Aligned_cols=103 Identities=17% Similarity=0.004 Sum_probs=55.2
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhCC----CC----HHHH--------HHHHHHH-HHhcCH--HHHHHHHHHH----
Q 013459 330 KEKGNQAYKDKQWLKAISFYTEAIKLNG----NN----ATYY--------SNRAAAY-LESGSF--LQAEADCTKA---- 386 (442)
Q Consensus 330 ~~~a~~~~~~~~~~~A~~~~~~al~~~p----~~----~~~~--------~~~~~~~-~~~~~~--~~A~~~~~~~---- 386 (442)
.+.|..++..|++++|+..|+.++..-| ++ .++. |.+|... ....+. +...+.++-+
T Consensus 118 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYFT 197 (325)
T 3mv2_A 118 MNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYFT 197 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhc
Confidence 4458888899999999999998886522 11 1111 1112111 000000 0001111111
Q ss_pred -HhcCCccHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 013459 387 -INLDKKNVKAYLRRGT-AREMLGYYKEAIEDFSYALVLEPTNKRASL 432 (442)
Q Consensus 387 -l~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 432 (442)
.++.|.+...-...|. ..++.++|..|....++.+++.|..+.+..
T Consensus 198 ~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~q 245 (325)
T 3mv2_A 198 KAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQ 245 (325)
T ss_dssp GSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 1223332222222333 457899999999999999999997655443
No 303
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=46.86 E-value=34 Score=33.85 Aligned_cols=51 Identities=20% Similarity=0.161 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHH
Q 013459 361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYK 411 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~ 411 (442)
+.....+...+..|+|.-|.+....++..+|+|.++...++.+|.++|...
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 445667888889999999999999999999999999999999999988543
No 304
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=45.71 E-value=30 Score=23.50 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=7.3
Q ss_pred HHHHHHHHHhhCCCCh
Q 013459 413 AIEDFSYALVLEPTNK 428 (442)
Q Consensus 413 A~~~~~~~l~~~p~~~ 428 (442)
|++.|.++++..|+..
T Consensus 45 aie~l~~alk~e~d~~ 60 (83)
T 2w2u_A 45 AIEVLAQLVSLYRDGS 60 (83)
T ss_dssp HHHHHHHHHHHSTTSS
T ss_pred HHHHHHHHHHHCCCHH
Confidence 4444444444555433
No 305
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.40 E-value=19 Score=26.20 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=26.8
Q ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 013459 339 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391 (442)
Q Consensus 339 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 391 (442)
...|++|..+..++|.++. .+.-...+.-|.+++..+++++.+..
T Consensus 16 k~~h~~AF~~Is~AL~~DE--------~g~k~~Al~lYk~GI~eLe~Gl~I~~ 60 (116)
T 2dl1_A 16 REAYKKAFLFVNKGLNTDE--------LGQKEEAKNYYKQGIGHLLRGISISS 60 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HTCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHhhhhh--------cCCHHHHHHHHHHHHHHHHHhccccc
Confidence 3567888888888887764 13333334445555555556665543
No 306
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=43.40 E-value=34 Score=23.21 Aligned_cols=17 Identities=41% Similarity=0.475 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhCCCCh
Q 013459 412 EAIEDFSYALVLEPTNK 428 (442)
Q Consensus 412 ~A~~~~~~~l~~~p~~~ 428 (442)
+|++.|.++++..|+..
T Consensus 36 ~aie~l~~~lk~e~d~~ 52 (83)
T 2v6y_A 36 KAIEVLSQIIVLYPESV 52 (83)
T ss_dssp HHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHCCCHH
Confidence 34444444555555443
No 307
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=48.17 E-value=5.4 Score=39.56 Aligned_cols=51 Identities=12% Similarity=0.024 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL 377 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 377 (442)
+.....|+.++..|+|..|.++.+.++..+|++..+...++.+|.++|.-.
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~ 512 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQT 512 (668)
Confidence 445667888888999999999999999999999999888999888888433
No 308
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=41.73 E-value=64 Score=23.90 Aligned_cols=71 Identities=6% Similarity=0.010 Sum_probs=35.2
Q ss_pred HHHHHHhcccHHHHHHHHHHH---HhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHH
Q 013459 332 KGNQAYKDKQWLKAISFYTEA---IKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRRGTARE 405 (442)
Q Consensus 332 ~a~~~~~~~~~~~A~~~~~~a---l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~ 405 (442)
-.+.++..++.+..+..++.. ++..|+.. ........--.+..+|..++++..+.... ...+|-.+-.+|.
T Consensus 46 ASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT~---~E~sF~~~fG~~L~~A~~~~~~y~~t~d~~~lnqAWd~Y~~Vf~ 121 (126)
T 2npu_A 46 ASRLYFGERNVKGMFEVLEPLHAMMERGPQTL---KETSFNQAYGRDLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFR 121 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHccCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Confidence 344455677777777666555 33345442 22233333334466777777666543322 1234444444443
No 309
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=41.60 E-value=2.1e+02 Score=26.21 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=21.4
Q ss_pred HHHHHHHHHhh-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013459 345 AISFYTEAIKL-----NGNNATYYSNRAAAYLESGSFLQAEADCTKA 386 (442)
Q Consensus 345 A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 386 (442)
++.+|++++.. ...+.-.|..+|-+++..++|.+|++.+..+
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~a 329 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADT 329 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhh
Confidence 55556665553 1122333444455555566666666655544
No 310
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=41.25 E-value=55 Score=30.54 Aligned_cols=35 Identities=20% Similarity=0.058 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-CCC
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NGN 358 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~ 358 (442)
.....+|..|+.++.+++|.+|.+++..|+.. .|.
T Consensus 218 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 218 QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 34455566666666666666666666666665 443
No 311
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=40.66 E-value=60 Score=22.52 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=10.7
Q ss_pred cHHHHHHHHHHHHhhC
Q 013459 341 QWLKAISFYTEAIKLN 356 (442)
Q Consensus 341 ~~~~A~~~~~~al~~~ 356 (442)
..+.|+.++.+|++.+
T Consensus 11 ~l~~Ai~lv~~Ave~D 26 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELD 26 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777777776653
No 312
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=40.60 E-value=20 Score=25.30 Aligned_cols=81 Identities=11% Similarity=-0.056 Sum_probs=45.0
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCH
Q 013459 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY 410 (442)
Q Consensus 331 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~ 410 (442)
++|..-.-...++||....+ .+...++..-+-..+...++..|+|++|....+... .++.--.++.|-.+.|-.
T Consensus 11 E~AL~gTG~H~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~ 84 (115)
T 2uwj_G 11 ELALAGSGQHCHEEALCIAE-WLERLGQDEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLG 84 (115)
T ss_dssp HHHHHHHTTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCH
T ss_pred HHHHHHccchHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccH
Confidence 34444444556666655443 444444433344455666777788887766544332 223333456666777777
Q ss_pred HHHHHHH
Q 013459 411 KEAIEDF 417 (442)
Q Consensus 411 ~~A~~~~ 417 (442)
+++...+
T Consensus 85 s~le~rL 91 (115)
T 2uwj_G 85 AALDRRL 91 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766655
No 313
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=38.96 E-value=1.5e+02 Score=23.94 Aligned_cols=96 Identities=11% Similarity=0.000 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcccH---HHHH-HHHHHHHhhCCC------C---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Ccc
Q 013459 329 AKEKGNQAYKDKQW---LKAI-SFYTEAIKLNGN------N---ATYYSNRAAAYLESGSFLQAEADCTKAINLD--KKN 393 (442)
Q Consensus 329 ~~~~a~~~~~~~~~---~~A~-~~~~~al~~~p~------~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~ 393 (442)
|...-...+-.|.. ..-. .++++++....+ | ...|...+.++ ..++..++...|..+.... -..
T Consensus 36 YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~ 114 (202)
T 3esl_A 36 YMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKL 114 (202)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTB
T ss_pred HHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHH
Confidence 33344444544443 1233 578888775333 2 23333333322 1233678888888877654 445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013459 394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425 (442)
Q Consensus 394 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 425 (442)
...|-..|..+...|++++|.+.|+..++...
T Consensus 115 AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 115 SLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 66777778889999999999999999998764
No 314
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.80 E-value=1.1e+02 Score=25.31 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=52.4
Q ss_pred ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 013459 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 392 (442)
.-.+++.-...|...+.. . +++...|.-... +.-..+..|...|..+...|++++|...|+++++..-.
T Consensus 112 rYknD~RyLklWl~Ya~~---~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 112 LYKDDVRYLRIWMQYVNY---I---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp GGTTCHHHHHHHHHHHTT---C---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred cccCCHHHHHHHHHHHHc---c---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 455668888888887763 2 355566665554 35567888999999999999999999999999987643
No 315
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=37.08 E-value=48 Score=22.62 Aligned_cols=17 Identities=12% Similarity=0.237 Sum_probs=7.8
Q ss_pred HHcCCHHHHHHHHHHHH
Q 013459 405 EMLGYYKEAIEDFSYAL 421 (442)
Q Consensus 405 ~~~~~~~~A~~~~~~~l 421 (442)
...|+|++|+.+|..++
T Consensus 27 D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44455544444444433
No 316
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=36.22 E-value=36 Score=22.80 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 013459 398 LRRGTAREMLGYYKEAIEDFSYALV 422 (442)
Q Consensus 398 ~~~a~~~~~~~~~~~A~~~~~~~l~ 422 (442)
..+|+=|.-.|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3456666777777777777666654
No 317
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.94 E-value=83 Score=22.86 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013459 326 AEIAKEKGNQAYKDKQWLKAISFYTEAI 353 (442)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~A~~~~~~al 353 (442)
+..+.+.|...=..|+-++|+++|.+.|
T Consensus 22 AF~~Is~AL~~DE~g~k~~Al~lYk~GI 49 (116)
T 2dl1_A 22 AFLFVNKGLNTDELGQKEEAKNYYKQGI 49 (116)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 318
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=35.84 E-value=1.2e+02 Score=21.56 Aligned_cols=55 Identities=7% Similarity=-0.129 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI 387 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 387 (442)
+-.-+...++++|+|++|..+.+..- .++.--.++.|..+.|-..++...+.+.-
T Consensus 41 v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 41 ARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44556778889999999987654321 45555667889999999999998885443
No 319
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=35.45 E-value=1.2e+02 Score=21.55 Aligned_cols=56 Identities=7% Similarity=-0.081 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 013459 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI 387 (442)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 387 (442)
-+-.-+...++++|+|++|..+.+..- .++.--.++.|..+.|-..++...+.+.-
T Consensus 41 ~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 41 AVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344556778899999999988765432 45555667888999999999988885443
No 320
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=34.34 E-value=1.2e+02 Score=22.43 Aligned_cols=71 Identities=7% Similarity=-0.151 Sum_probs=37.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHH---HhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHh
Q 013459 366 RAAAYLESGSFLQAEADCTKA---INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT--NKRASLSADRLRK 439 (442)
Q Consensus 366 ~~~~~~~~~~~~~A~~~~~~~---l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~ 439 (442)
-..+++..++.+..++.++.+ ++..|.. .........--.+..+|..++++..+.... -..+|..+..+.+
T Consensus 46 ASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT---~~E~sF~~~fG~~L~~A~~~~~~y~~t~d~~~lnqAWd~Y~~Vf~ 121 (126)
T 2npu_A 46 ASRLYFGERNVKGMFEVLEPLHAMMERGPQT---LKETSFNQAYGRDLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFR 121 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHccCCCC---HHHHHHHHHHhHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Confidence 345666777888887777666 3333433 223333333334466777777776544322 1245555554443
No 321
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.74 E-value=2.7e+02 Score=25.20 Aligned_cols=88 Identities=9% Similarity=0.008 Sum_probs=54.8
Q ss_pred HHHhcccHHHHHHHHHHHHhhC-------C--------CC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------C
Q 013459 335 QAYKDKQWLKAISFYTEAIKLN-------G--------NN--ATYYSNRAAAYLESGSFLQAEADCTKAINL-------D 390 (442)
Q Consensus 335 ~~~~~~~~~~A~~~~~~al~~~-------p--------~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~ 390 (442)
......+.++|++.+++....- . .. ..+....+..|...++.++|...++++-.. +
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 3345567888888877664321 0 01 234445678888889999999888887542 2
Q ss_pred Ccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013459 391 KKN-VKAYLRRGTAREMLGYYKEAIEDFSYALV 422 (442)
Q Consensus 391 p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 422 (442)
|.. ...+...+..|...+++.++....-.++.
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 222 23334456666778888877776666654
No 322
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.55 E-value=1.6e+02 Score=22.57 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=47.2
Q ss_pred ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 013459 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 391 (442)
.-.+++.-...|...+... +++.+.|.-.... .-..+..|...|..+...|++++|.+.|+++++.+.
T Consensus 63 ~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 63 KYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp GGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3445677777777666542 2356666655543 445677788888888888888888888888888654
No 323
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=33.39 E-value=1e+02 Score=28.70 Aligned_cols=29 Identities=17% Similarity=-0.034 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 013459 360 ATYYSNRAAAYLESGSFLQAEADCTKAIN 388 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 388 (442)
..++..++.+|+..++|++|++.+++++.
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 34566667777777777777777777664
No 324
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=31.69 E-value=1.7e+02 Score=25.59 Aligned_cols=85 Identities=11% Similarity=0.090 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 402 (442)
-.+++.+..+|..+++.+++.+|..+|-.. +.+++..+..+-.-+.+. .-.-.|.....+...+.
T Consensus 131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~------------~~~~~~~e~dlf~~RaV 195 (312)
T 2wpv_A 131 FGDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQ------------VDDIEDSTVAEFFSRLV 195 (312)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHH------------TTCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHh------------cCCCCcchHHHHHHHHH
Confidence 356778889999999999999988887521 111222222211111111 00012333444444444
Q ss_pred -HHHHcCCHHHHHHHHHHHHh
Q 013459 403 -AREMLGYYKEAIEDFSYALV 422 (442)
Q Consensus 403 -~~~~~~~~~~A~~~~~~~l~ 422 (442)
.|..+++...|...++...+
T Consensus 196 L~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 196 FNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 35678888888888776553
No 325
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=31.60 E-value=70 Score=22.72 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 354 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 354 (442)
..+++.+...|....+.|+|++|.+.++++-+
T Consensus 15 aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 15 SGQARSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677888888899999999999988887754
No 326
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=31.47 E-value=1.1e+02 Score=28.41 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 013459 360 ATYYSNRAAAYLESGSFLQAEADCTKAIN 388 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 388 (442)
..++..++.+|+..++|++|+..+++++.
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34555666666666777777766666654
No 327
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=31.42 E-value=1.8e+02 Score=22.58 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=51.7
Q ss_pred ccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 013459 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 391 (442)
.-.+++.-...|...+... + ++.+.|..... +.-..+..|...|..+...|++++|.+.|+++++...
T Consensus 58 ~YknD~RyLklWl~ya~~~---~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 58 RYYSDPRFLNLWLKLGRLC---N---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp GGTTCHHHHHHHHHHHHHC---S---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hhccCHHHHHHHHHHHHhc---C---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4556678888888777653 2 35556665554 3456788888999999999999999999999998764
No 328
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=31.37 E-value=32 Score=27.76 Aligned_cols=48 Identities=6% Similarity=0.041 Sum_probs=30.6
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCHHHH
Q 013459 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA 379 (442)
Q Consensus 332 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A 379 (442)
...+++++|.|++|.+.+++.+..++.+......|..+-.+...+..-
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~ 170 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSF 170 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHH
Confidence 345778999999999999999988877766666666555444444333
No 329
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=31.24 E-value=71 Score=22.78 Aligned_cols=32 Identities=22% Similarity=0.078 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 354 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 354 (442)
..+++.+...|....+.|+|++|.+.++++-+
T Consensus 17 aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 17 AGDARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45778888889999999999999998887754
No 330
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=31.16 E-value=95 Score=19.17 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=14.9
Q ss_pred hcccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCHHHHH
Q 013459 338 KDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAE 380 (442)
Q Consensus 338 ~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~A~ 380 (442)
-...++||....+ .++..++.. .+-..+...++..|+|++|+
T Consensus 18 G~HcH~EA~tIA~-~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 18 GHHCHQEAASIAD-WLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp TTTCHHHHHHHHH-HHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred cchHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 3345555544333 333333322 23333455555666666553
No 331
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=30.79 E-value=68 Score=21.65 Aligned_cols=10 Identities=30% Similarity=0.331 Sum_probs=3.9
Q ss_pred cCCHHHHHHH
Q 013459 407 LGYYKEAIED 416 (442)
Q Consensus 407 ~~~~~~A~~~ 416 (442)
.|+|++|+.+
T Consensus 26 ~g~y~eAl~~ 35 (85)
T 2v6x_A 26 ATQYEEAYTA 35 (85)
T ss_dssp TTCHHHHHHH
T ss_pred cCCHHHHHHH
Confidence 3444333333
No 332
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=29.97 E-value=62 Score=23.60 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=6.6
Q ss_pred HHHHHHHHHhhCCCCh
Q 013459 413 AIEDFSYALVLEPTNK 428 (442)
Q Consensus 413 A~~~~~~~l~~~p~~~ 428 (442)
|+++|.++++..+.+.
T Consensus 44 Aie~l~~alk~e~~~~ 59 (117)
T 2cpt_A 44 AVQYFLHVVKYEAQGD 59 (117)
T ss_dssp HHHHHHHHHHTSCCCH
T ss_pred HHHHHHHHHHhccCCH
Confidence 3334444444443343
No 333
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.94 E-value=1.9e+02 Score=22.37 Aligned_cols=60 Identities=10% Similarity=0.016 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHH-HHHH--HHHcCCHHHHHHHHHHHHhh
Q 013459 364 SNRAAAYLESGSFLQAEADCTKAINLDKKN------VKAYLR-RGTA--REMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~-~a~~--~~~~~~~~~A~~~~~~~l~~ 423 (442)
+..+..++..|+|-+|=..++.+-+..+.. ...+.+ ++.+ ..+.|+...|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445777888899999999999988765443 234444 4433 35679999999999999874
No 334
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=29.29 E-value=1.4e+02 Score=20.43 Aligned_cols=30 Identities=7% Similarity=0.002 Sum_probs=22.6
Q ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 013459 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYT 350 (442)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 350 (442)
+--+.+..|++-|..+++.||+..|+..+.
T Consensus 34 ~~l~mA~~Y~~Da~~fl~kGD~v~Ala~is 63 (87)
T 2pmr_A 34 AVVERALNYRDDSVYYLEKGDHITSFGCIT 63 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334677778888888888888888877654
No 335
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=29.29 E-value=2.3e+02 Score=22.96 Aligned_cols=74 Identities=9% Similarity=-0.019 Sum_probs=58.7
Q ss_pred cccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 013459 317 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391 (442)
Q Consensus 317 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 391 (442)
..-.+++.-...|...+..+ ..++..++...|.-.... .-..+..|...|..+...|++++|.+.|+++++...
T Consensus 71 ~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 71 ETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp GGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34556788888888888776 334466777777776654 566788899999999999999999999999998764
No 336
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=28.87 E-value=1.3e+02 Score=28.30 Aligned_cols=30 Identities=13% Similarity=0.052 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 360 ATYYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
..++..++.+|+..++|++|+..+++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 346667778888888888888888877754
No 337
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=28.56 E-value=1.2e+02 Score=27.20 Aligned_cols=29 Identities=24% Similarity=0.100 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013459 394 VKAYLRRGTAREMLGYYKEAIEDFSYALV 422 (442)
Q Consensus 394 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 422 (442)
.-.|..+|-.+++.+++.+|++++-.+-.
T Consensus 296 vYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 296 IYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 34444556666667777777766665543
No 338
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=28.34 E-value=1.2e+02 Score=28.29 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 013459 360 ATYYSNRAAAYLESGSFLQAEADCTKAIN 388 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 388 (442)
..++..++.+|+..++|++|++.+++++.
T Consensus 202 ~aa~allarvyL~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 202 WAAQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34566667777777777777777777765
No 339
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer of translation terminatio translation; HET: CME; 2.15A {Schizosaccharomyces pombe} PDB: 3qtn_B
Probab=28.28 E-value=2.8e+02 Score=23.63 Aligned_cols=83 Identities=8% Similarity=-0.045 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHH-------HhhCC------CCHHHHHHHHH---HHHH------hc-------
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEA-------IKLNG------NNATYYSNRAA---AYLE------SG------- 374 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-------l~~~p------~~~~~~~~~~~---~~~~------~~------- 374 (442)
++.--++.+.+..+..|+.++.+.+++-. ++... +...+.|.++. .-.. .+
T Consensus 20 sql~gly~msre~le~g~i~~sv~LLNGIIHECDRLLR~~e~~~~Lpd~FhAIYAlALl~lSELa~~a~Fk~ede~~V~e 99 (346)
T 3qtm_A 20 SQLWGLYEMSREKLENDDIDASVSLVFGTIHEADRILRNTEDISTLPKDFHAAYSSALLAVSELFEIAQKRLKETNTEES 99 (346)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCSCGGGSCHHHHHHHHHHHHHHHHTHHHHGGGSCTTCCHHH
T ss_pred HHHHhHHHHHHHHhhccCchhhhHHHcChHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhHHHhhHHhhccCchhhhHHH
Confidence 44455677777777888887777665433 33222 11222333333 1122 11
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Q 013459 375 SFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406 (442)
Q Consensus 375 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 406 (442)
-++.|++-++-.++..|++....+.++.++.+
T Consensus 100 FFDaALERielGLe~~p~s~~L~la~SKILlq 131 (346)
T 3qtm_A 100 YIDAAIERAQLGLDAPGNESRLFLALARAYLE 131 (346)
T ss_dssp HHHHHHHHHHHGGGSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhCCCChhHHHHHHHHHHH
Confidence 26777888888888889888877777766653
No 340
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=28.15 E-value=86 Score=22.53 Aligned_cols=32 Identities=16% Similarity=-0.042 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 354 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 354 (442)
..+++.+...|....+.|+|++|.+.++++-+
T Consensus 19 aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 19 SGNARSFAMEALQFAKQGKMAEADEAMVKAKE 50 (109)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677788888888899999999988887743
No 341
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.86 E-value=2.6e+02 Score=23.08 Aligned_cols=96 Identities=8% Similarity=0.012 Sum_probs=58.8
Q ss_pred HHHHHHHHHhccc--HHHHHHHHHHHHhhCCCCH----HH-HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHH
Q 013459 329 AKEKGNQAYKDKQ--WLKAISFYTEAIKLNGNNA----TY-YSNRAAAYLESGSFLQAEADCTKAINLD--KKNVKAYLR 399 (442)
Q Consensus 329 ~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~----~~-~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~ 399 (442)
|.......+-.|. -..-..++++++....++. +. |..+-.-|... -+++...|..+.... -.....|-.
T Consensus 78 YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~ 155 (223)
T 4aez_C 78 YIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY--IDEPVELFSFLAHHHIGQESSIFYEE 155 (223)
T ss_dssp HHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHH
T ss_pred HHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc--cCCHHHHHHHHHHCCcchhHHHHHHH
Confidence 4444555554443 1224567777777644431 11 22222223222 246667777776554 445667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013459 400 RGTAREMLGYYKEAIEDFSYALVLEPT 426 (442)
Q Consensus 400 ~a~~~~~~~~~~~A~~~~~~~l~~~p~ 426 (442)
.|..+...|++++|.+.|+..++....
T Consensus 156 wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 156 YANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 888999999999999999999987654
No 342
>2l1l_A CAMP-dependent protein kinase inhibitor alpha; nuclear export, PKI NES, CRM1, RANGTP, nuclear protein; NMR {Homo sapiens}
Probab=27.29 E-value=25 Score=18.02 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.0
Q ss_pred CCChHHHHHHhhcCcceeeccCCC
Q 013459 4 GSSSGAAVAVAADLVDFSLGIDTV 27 (442)
Q Consensus 4 GSSgGsaaava~~~~~~a~GtD~g 27 (442)
||++|+..=++..+..+.|..+-|
T Consensus 1 ~~a~g~tsdLa~kLaeLdl~~~eG 24 (27)
T 2l1l_A 1 GSASGNLNELALKLAGLDINKTEG 24 (27)
T ss_dssp CCCCCCHHHHHHHHTCCCSSSCCC
T ss_pred CCCCccHHHHHHHHHHccccccCC
Confidence 788889999999999988887643
No 343
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=26.75 E-value=1.5e+02 Score=27.62 Aligned_cols=31 Identities=6% Similarity=-0.197 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 393 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
...++..+|++|...+++++|+++.++++..
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 3567888999999999999999999999853
No 344
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=26.53 E-value=94 Score=22.77 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 354 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 354 (442)
..+++.+...|....+.|+|++|.+.++++-+
T Consensus 34 aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e 65 (120)
T 3l8r_A 34 SGNARSIVHEAFDAMREKNYILAEQKLQEAND 65 (120)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677888888889999999999999887753
No 345
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=26.38 E-value=1.9e+02 Score=21.38 Aligned_cols=33 Identities=12% Similarity=-0.037 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 013459 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 355 (442)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 355 (442)
.+.+......|..++..|.|+.|.-..+++++.
T Consensus 13 ~~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~Ek 45 (135)
T 1o3u_A 13 MDAAKDDLEHAKHDLEHGFYNWACFSSQQAAEK 45 (135)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 456677778888888999988877777766653
No 346
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=25.53 E-value=1.6e+02 Score=20.03 Aligned_cols=31 Identities=6% Similarity=-0.030 Sum_probs=23.3
Q ss_pred ccchHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 013459 320 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYT 350 (442)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 350 (442)
.+--+.+..|++-|..+++.|++..|+..+.
T Consensus 29 ~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~is 59 (86)
T 2oo2_A 29 EGFMRNIEAYISDSRYFLEKGDLVRAFECVV 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3345677788888888888888888877754
No 347
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.17 E-value=57 Score=26.31 Aligned_cols=34 Identities=18% Similarity=-0.040 Sum_probs=17.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 013459 403 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADR 436 (442)
Q Consensus 403 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 436 (442)
++.+.|++++|.+.+++.+.-++++......|..
T Consensus 126 VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~ 159 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLM 159 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC-----CCTTHHHHHH
T ss_pred HHHHccchHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 4556666666666666666666555555444443
No 348
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=24.96 E-value=1.4e+02 Score=27.22 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=31.7
Q ss_pred HHHHHHHHHhh-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 013459 345 AISFYTEAIKL-----NGNNATYYSNRAAAYLESGSFLQAEADCTKAI 387 (442)
Q Consensus 345 A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 387 (442)
++.+|.+++.. ...+.-.|..+|-++++.+++.+|+..+..+-
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 66667777654 23344567778889999999999999887764
No 349
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=24.75 E-value=1.6e+02 Score=27.67 Aligned_cols=33 Identities=12% Similarity=-0.115 Sum_probs=28.1
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 392 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
....++..+|++|...+++++|+++.++++...
T Consensus 201 tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 201 DNEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 335678889999999999999999999998753
No 350
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=24.53 E-value=1.6e+02 Score=27.37 Aligned_cols=31 Identities=19% Similarity=0.013 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013459 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423 (442)
Q Consensus 393 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 423 (442)
...++..+|++|...+++++|.++.++++..
T Consensus 195 k~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 195 RWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3567888999999999999999999998863
No 351
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=24.47 E-value=3.7e+02 Score=23.78 Aligned_cols=63 Identities=16% Similarity=0.126 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHH----------------HHHhhCCCCHHHHHHHH-HHHHHhcCHHHHHHHHHHHH
Q 013459 325 SAEIAKEKGNQAYKDKQWLKAISFYT----------------EAIKLNGNNATYYSNRA-AAYLESGSFLQAEADCTKAI 387 (442)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~A~~~~~----------------~al~~~p~~~~~~~~~~-~~~~~~~~~~~A~~~~~~~l 387 (442)
+++.+..+|..+++.++|.+|..+|- ...+..|...+.+..++ ..|..+++...|...++..+
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34445555666665555555555541 11122345566666666 55678899999988665544
No 352
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=24.31 E-value=1.8e+02 Score=27.20 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCC--------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013459 377 LQAEADCTKAINLDK--------KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424 (442)
Q Consensus 377 ~~A~~~~~~~l~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 424 (442)
+.-+++++.|+.+-| ....++..+|++|...+++++|.++.++++...
T Consensus 177 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 177 EQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 445555555554433 235578889999999999999999999998753
No 353
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=23.82 E-value=3.1e+02 Score=22.65 Aligned_cols=48 Identities=13% Similarity=-0.046 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHh
Q 013459 341 QWLKAISFYTEAIKL--------NGNNATYYSNRAAAYL-ESGSFLQAEADCTKAIN 388 (442)
Q Consensus 341 ~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~ 388 (442)
+-+.|...|++|.++ +|-......+.+..|+ -+++.++|....++++.
T Consensus 140 ~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 140 SLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 355566666666543 3333445555554444 47888888888888865
No 354
>2vt8_A HPI31, PI31, proteasome inhibitor PI31 subunit; polymorphism, hydrolase inhibitor; 2.6A {Homo sapiens}
Probab=22.82 E-value=39 Score=26.10 Aligned_cols=35 Identities=11% Similarity=0.137 Sum_probs=26.0
Q ss_pred HHHHhhcCcceeeccCCC----Ccccccccccc---cccccC
Q 013459 10 AVAVAADLVDFSLGIDTV----GGVRVPSAFCG---ILGFRP 44 (442)
Q Consensus 10 aaava~~~~~~a~GtD~g----GSiR~PA~~~g---~~g~kp 44 (442)
+..++.|+..+|+|.+.. +|.+.|..||. .|.|+=
T Consensus 30 ~~m~~~gfr~~g~g~~~~~~~~~se~LP~~WN~~~~~Y~f~Y 71 (153)
T 2vt8_A 30 WEVVTHGYCGLGVGDQPGPNDKKSELLPAGWNNNKDLYVLRY 71 (153)
T ss_dssp HHHHTTTEEEEEESSSCCTTCCCBSSCCTTTTSCSSEEEEEE
T ss_pred HHHHhcCCEeccCCCccCcccccccCCCHHHcCCCCeEEEEe
Confidence 345677888889988864 77889999984 466663
No 355
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.54 E-value=3.7e+02 Score=26.48 Aligned_cols=99 Identities=16% Similarity=0.095 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc--------------CHHHHHHHHHHHHhcC---
Q 013459 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--------------SFLQAEADCTKAINLD--- 390 (442)
Q Consensus 328 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--------------~~~~A~~~~~~~l~~~--- 390 (442)
.....|...-..|++++|+.+|.-+-+.+.--.-....++.+..... +...-.+.+.+....+
T Consensus 445 i~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~ 524 (661)
T 2qx5_A 445 ITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGI 524 (661)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchh
Confidence 34556777788888888888877654332111112223444444332 2222222222222222
Q ss_pred -----CccH---HHHHHHHHHH--HHcCCHHHHHHHHHHHHhhCCCC
Q 013459 391 -----KKNV---KAYLRRGTAR--EMLGYYKEAIEDFSYALVLEPTN 427 (442)
Q Consensus 391 -----p~~~---~~~~~~a~~~--~~~~~~~~A~~~~~~~l~~~p~~ 427 (442)
+.+. ..+..+...+ +..|++++|++.+++ +.+-|-+
T Consensus 525 ~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 525 SRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 2222 2344445554 789999999999988 5566765
No 356
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=28.11 E-value=18 Score=35.77 Aligned_cols=53 Identities=23% Similarity=0.194 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcCCHHHH
Q 013459 361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 413 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A 413 (442)
+.....+.-.+..|+|.-|.+.+..++..+|+|.++...++.+|.++|...+.
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 34455677778899999999999999999999999999999999999976553
No 357
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=22.26 E-value=6.7e+02 Score=25.97 Aligned_cols=26 Identities=19% Similarity=0.029 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013459 397 YLRRGTAREMLGYYKEAIEDFSYALV 422 (442)
Q Consensus 397 ~~~~a~~~~~~~~~~~A~~~~~~~l~ 422 (442)
|+...+|+.++++.+.+.+.|.+++.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455677777777777777777653
No 358
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=21.56 E-value=55 Score=22.51 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=11.6
Q ss_pred ccHHHHHHHHHHHHhhCC
Q 013459 340 KQWLKAISFYTEAIKLNG 357 (442)
Q Consensus 340 ~~~~~A~~~~~~al~~~p 357 (442)
..|++|..+..++|..+.
T Consensus 11 ~~h~~AF~~Is~aL~~DE 28 (89)
T 3eab_A 11 VFHKQAFEYISIALRIDE 28 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 456677777777766543
No 359
>1ycp_F Fibrinopeptide A-alpha; fibrinopeptide-A, complex (serine protease-peptide), thrombi hydrolase-hydrolase substrate complex; 2.50A {Bos taurus}
Probab=21.34 E-value=25 Score=17.66 Aligned_cols=9 Identities=56% Similarity=0.815 Sum_probs=6.3
Q ss_pred CCCcccccc
Q 013459 26 TVGGVRVPS 34 (442)
Q Consensus 26 ~gGSiR~PA 34 (442)
-||++|-|-
T Consensus 11 eGGgvRGPR 19 (26)
T 1ycp_F 11 EGGGVRGPR 19 (26)
T ss_pred cCCCccCCe
Confidence 477888774
No 360
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=20.73 E-value=1.5e+02 Score=18.00 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 013459 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 355 (442)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 355 (442)
.+++-+...|...++-.|...|++.+++++++
T Consensus 18 ~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~l 49 (53)
T 2rkl_A 18 EQIQKLAKYAISALNYEDLPTAKDELTKALDL 49 (53)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 34556666677777777777777777777653
No 361
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=20.21 E-value=2.2e+02 Score=19.69 Aligned_cols=53 Identities=6% Similarity=0.072 Sum_probs=25.3
Q ss_pred HHHHhcccHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 013459 334 NQAYKDKQWLKAISFYTEAIKL---NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389 (442)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 389 (442)
+.++..++.+..+..+....+. .|+.. ...+-...--.+..+|..++++..+.
T Consensus 18 r~~f~~~n~~~m~~~L~pLh~~l~~~peT~---~E~sF~~~fG~~L~~A~~~~~~y~~t 73 (94)
T 3fap_B 18 RLYFGERNVKGMFEVLEPLHAMMERGPQTL---KETSFNQAYGRDLMEAQEWCRKYMKS 73 (94)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHCCCSH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666665555433 44432 22222222223345666666655443
Done!