RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013459
(442 letters)
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 393 bits (1010), Expect = e-134
Identities = 176/315 (55%), Positives = 225/315 (71%), Gaps = 12/315 (3%)
Query: 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
+PGGSSSG+AVAV A LVDFSLG DT G VRVP+++CGI GFRPS+GAVS +G+IP++ S
Sbjct: 108 VPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGVIPMAQS 167
Query: 61 LDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKST 120
DTVGWFARDP IL+ VGHVLLQ P P QIIIA+DCF+L IP DR+VQV++KS
Sbjct: 168 FDTVGWFARDPVILKRVGHVLLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSV 227
Query: 121 EKLFGR-QVLKHENLGEYFDSKVPSLKGF-HKTNGE----------LKNVMRLIQRYEFK 168
EKLFG ++KH NLG+Y + KVPSLK F K E L + MRL+QRYEFK
Sbjct: 228 EKLFGGGDIVKHVNLGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFK 287
Query: 169 NNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTP 228
NH EWI +VKP P IS I E + +E I+ C+S++ E+R+A+++LL + G+LV P
Sbjct: 288 INHGEWITAVKPEFGPGISERIWEAVRTTEEKIDACQSVKTELRAALTTLLGEFGVLVIP 347
Query: 229 TTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGG 288
T PPPKL E ++ RAFSLLSIA VSG CQV++PLG +D P SVS +A+HG
Sbjct: 348 TVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVSVSLLAKHGS 407
Query: 289 DRFLLDTVQNMYASL 303
D FLL+ V+++Y ++
Sbjct: 408 DGFLLNLVESLYGTI 422
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 235 bits (602), Expect = 1e-73
Identities = 100/306 (32%), Positives = 143/306 (46%), Gaps = 21/306 (6%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
PGGSSSG+A AVA L DF+LG DT G VR P++FCG+ G RP++G +S G++P++ S
Sbjct: 108 PGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEGVMPLAPSF 167
Query: 62 DTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTE 121
DTVGWFARD +L VG VLL ++++I D F LL ++ +
Sbjct: 168 DTVGWFARDIALLERVGEVLLGDDAQEFPLTQRLLIPVDLFALLDPAVRAALEAALARLR 227
Query: 122 KLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELK---NVMRLIQRYEFKNNHNEWIESV 178
G K L R++Q E H WI S
Sbjct: 228 PHLG------------------PAKPASVPPLSLDEWYEAFRVLQAAEAWETHGAWISSG 269
Query: 179 KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG 238
P L P ++ E++ +E ++ R +++LL D +L+ PT P G
Sbjct: 270 NPQLGPGVADRFAAGAEVTADQVEAARARRAAFARELAALLGPDAVLLLPTVPGAAPLRG 329
Query: 239 GKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQN 298
E Y+ RA LL IA ++G Q+++PL D P +S I G DR LL Q
Sbjct: 330 APFEALEAYRERALRLLCIAGLAGLPQISLPLASVDGAPFGLSLIGPRGSDRSLLALAQT 389
Query: 299 MYASLQ 304
+ A+
Sbjct: 390 IAAARS 395
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 148 bits (375), Expect = 1e-39
Identities = 85/309 (27%), Positives = 133/309 (43%), Gaps = 22/309 (7%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
PGGSS G+A AVAA LV +LG DT G +R+P+AFCG++G +P+YG VS G++P+++SL
Sbjct: 154 PGGSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSL 213
Query: 62 DTVGWFAR---DPKILRHV--GHVLLQLPFAAQRSPRQIIIADDCFELLKI--PADRVVQ 114
D +G AR D +L V G P + D + L+I P +
Sbjct: 214 DQIGPLARTVRDAALLLDVIAGPDPRDSPLPPPPPVPPALAGKD-LKGLRIGVPKELGGG 272
Query: 115 VVI-KSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNE 173
+ F V E G L +RY + +
Sbjct: 273 GPLDPDVRAAFEAAVKALEAAGAEVVEVSLPLLSDDYALAAYYLARFDGERYGLRAA-DL 331
Query: 174 WIESVKPALDPDISAEI--GEMLEISETVIE--NCKSIRNEMRSAISSLLKDDGILVTPT 229
+ ++ P++ I G L +S + ++ + +R A L ++ +L+TPT
Sbjct: 332 YGKTRAEGFGPEVKRRIMLGTYL-LSAGYYDAYYRRAQKTLIRRAFDKLFEEVDVLLTPT 390
Query: 230 TAYPPPKLGGKEMLSED----YQNRAFSLLSIASVSGCCQVTVPLGYYDKC-PTSVSFIA 284
T P PK+G E +D Y F A+++G ++VP G+ P + I
Sbjct: 391 TPTPAPKIGESESDGDDPLEMYLLDVF--TVPANLAGLPAISVPAGFTADGLPVGLQLIG 448
Query: 285 RHGGDRFLL 293
D LL
Sbjct: 449 PAFDDATLL 457
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 137 bits (347), Expect = 4e-36
Identities = 82/321 (25%), Positives = 131/321 (40%), Gaps = 45/321 (14%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
PGGSS G+A AVAA LV ++G DT G +R+P+AFCG++G +P+YG VS G++P S+SL
Sbjct: 127 PGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPYSSSL 186
Query: 62 DTVGWFAR---------------DPKILRHVGHVLLQLPFAAQRSPRQIIIA---DDCFE 103
D VG AR DP + ++S + + I +D +
Sbjct: 187 DHVGPLARTVEDAALLLDVIAGYDPADPTSAPSPVPDFAEPLKKSLKGLRIGVPREDFYF 246
Query: 104 LLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQ 163
L R V+ + E L G +V E +P N+ L +
Sbjct: 247 SLDPEVQRAVRKAAAALEAL-GHEV--VEVEPPSLKHALPLYYIIAPAEA-SSNLSDLDE 302
Query: 164 RYEFKNNHNEWIESVKPALDPDISA--EIGEMLEISETVIENCKS---IRNEMRSAISSL 218
Y L ++ E+G + +R +R + L
Sbjct: 303 LYP---------RIRDELLGDEVKRRIELGAYALSAGYSGAYYLKAQKVRRLLRREFAGL 353
Query: 219 LKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSI-----ASVSGCCQVTVPLGY- 272
++ +L++PTT P P+LG ++ L A+++G +++P G+
Sbjct: 354 FEELDVLLSPTTPTPAPRLG---EAADSPTVLYNLLDFTANTVPANLAGLPAISLPAGFS 410
Query: 273 YDKCPTSVSFIARHGGDRFLL 293
D P + I G D LL
Sbjct: 411 EDGLPVGLQIIGPPGDDETLL 431
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 120 bits (304), Expect = 5e-30
Identities = 82/327 (25%), Positives = 140/327 (42%), Gaps = 44/327 (13%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
PGGSS G+A AVAADL FSLG DT G +R P++FCG++GF+P+YG VS G++ ++SL
Sbjct: 136 PGGSSGGSAAAVAADLAPFSLGSDTGGSIRQPASFCGVVGFKPTYGRVSRYGLVAYASSL 195
Query: 62 DTVGWFARDPKILRHVGHVL----LQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVI 117
D +G FAR + + + V+ + +A+ + FE LK + V+
Sbjct: 196 DQIGPFARTVEDIALLLDVISGHDKRDSTSAKVPDPEF------FEELKKDLKGLKVGVV 249
Query: 118 KSTEKLFGRQVLK-HENLGEYFDSKVPSLKGFHKTNGELKNVM---RLIQRYEFKNNH-- 171
K + ++V + EN E + + +K + +I E +N
Sbjct: 250 KEFSEEMDKEVQEKFENALEVLEELGAEIVEVSF--PHVKYALPIYYIISPSEASSNLAR 307
Query: 172 -------------NEWIESVKPALDPDISAE------IGEML---EISETVIENCKSIRN 209
N E E +G + + +R
Sbjct: 308 YDGIRYGYRIEEPNSLKELYAKTRAEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQKVRT 367
Query: 210 EMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSI-ASVSGCCQVTV 268
+ L ++ ++V+PT P K+G E L + + +L++ A+++G ++V
Sbjct: 368 LIIDDFLKLFEEVDVIVSPTAPTLPFKIG--EKLDDPLEMYLSDILTVPANLAGLPAISV 425
Query: 269 PLGYYDK-CPTSVSFIARHGGDRFLLD 294
P G +K P + I + D+ LL
Sbjct: 426 PCGVKEKGLPIGLQIIGKCFDDKTLLQ 452
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 107 bits (270), Expect = 2e-25
Identities = 38/69 (55%), Positives = 50/69 (72%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
PGGSS G+A AVAA L +LG DT G +R P+AFCG++G +P+YG VS G+I ++SL
Sbjct: 136 PGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAAFCGVVGLKPTYGRVSRYGLIAFASSL 195
Query: 62 DTVGWFARD 70
D +G FAR
Sbjct: 196 DQIGPFART 204
Score = 31.2 bits (72), Expect = 1.2
Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 207 IRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGK-----EMLSEDYQNRAFSLLSI-ASV 260
+R ++ + +++ PT K+G K M D + ++ A++
Sbjct: 366 VRTLIKQDFEKAFEKVDVILGPTAPTTAFKIGEKTDDPLAMYLSD-------IFTVPANL 418
Query: 261 SGCCQVTVPLGYYDKC-PTSVSFIARHGGDRFLLDT 295
+G ++VP G+ D P + I ++ + LL+
Sbjct: 419 AGLPAISVPAGFDDGGLPVGLQLIGKYFDEETLLNV 454
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found
in a variety of organisms including bacteria,
cyanobacteria, yeast, fungi, plants, and humans in
various subcellular locations; involved in a variety of
functions including protein-protein interactions, but
common features in the interaction partners have not
been defined; involved in chaperone, cell-cycle,
transciption, and protein transport complexes; the
number of TPR motifs varies among proteins (1,3-11,13
15,16,19); 5-6 tandem repeats generate a right-handed
helical structure with an amphipathic channel that is
thought to accomodate an alpha-helix of a target
protein; it has been proposed that TPR proteins
preferably interact with WD-40 repeat proteins, but in
many instances several TPR-proteins seem to aggregate to
multi-protein complexes; examples of TPR-proteins
include, Cdc16p, Cdc23p and Cdc27p components of the
cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal
targeting signals, the Tom70p co-receptor for
mitochondrial targeting signals, Ser/Thr phosphatase 5C
and the p110 subunit of O-GlcNAc transferase; three
copies of the repeat are present here.
Length = 100
Score = 94.0 bits (234), Expect = 2e-23
Identities = 40/100 (40%), Positives = 57/100 (57%)
Query: 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 386
E GN YK + +A+ +Y +A++L+ +NA Y N AAAY + G + +A D KA
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 387 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426
+ LD N KAY G A LG Y+EA+E + AL L+P
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
Score = 54.7 bits (132), Expect = 1e-09
Identities = 25/68 (36%), Positives = 34/68 (50%)
Query: 363 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 422
N Y + G + +A KA+ LD N AY A LG Y+EA+ED+ AL
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 423 LEPTNKRA 430
L+P N +A
Sbjct: 63 LDPDNAKA 70
Score = 32.7 bits (75), Expect = 0.085
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A L G LG Y EA+E + AL L+P N A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADA 36
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 101 bits (254), Expect = 3e-23
Identities = 47/98 (47%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Query: 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
+ GGSS G+A AVAA LV F+LG DT G +RVP++ CGI G +P+YG +S G P S
Sbjct: 152 IAGGSSGGSAAAVAAGLVPFTLGSDTNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVAS 211
Query: 61 LDTVGWFARDPKILRHVGHVL----LQLPFAAQRSPRQ 94
LD +G FAR L V VL Q PF A R
Sbjct: 212 LDHIGPFARSVADLALVYDVLQGPDPQDPFQADRPAEP 249
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 98.1 bits (245), Expect = 4e-22
Identities = 37/69 (53%), Positives = 46/69 (66%)
Query: 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
+ GGSS G A AVAA L LG DT G VR+P+A CG++G RP+ G S G++PIS +
Sbjct: 153 IAGGSSGGTAAAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHT 212
Query: 61 LDTVGWFAR 69
DTVG AR
Sbjct: 213 RDTVGPIAR 221
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 95.7 bits (239), Expect = 4e-21
Identities = 36/69 (52%), Positives = 46/69 (66%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
GGSSSG+AVAVA LV F+LG DT G RVP+AF I+G +P+ G +S G++P +L
Sbjct: 148 SGGSSSGSAVAVALGLVSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTL 207
Query: 62 DTVGWFARD 70
D V FA
Sbjct: 208 DCVSVFALT 216
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 93.9 bits (234), Expect = 8e-21
Identities = 80/319 (25%), Positives = 127/319 (39%), Gaps = 57/319 (17%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
PGGSSSG+AVAVAA LV ++G DT G VR+P+AF G++G++ + G S G+ P++ SL
Sbjct: 153 PGGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSL 212
Query: 62 DTVGWFAR--------DPKILRHVGHVLLQLPFAAQR--SPRQIIIADDCFELLKIPADR 111
D++G R D + +++ P A R P ++ D E P
Sbjct: 213 DSLGPLCRSVRDAVWIDAAMRGLTAPDVVRRPLAGLRLVVPETVV--FDDAE----PG-- 264
Query: 112 VVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY------ 165
V + E+L L P+ + ++ LI R+
Sbjct: 265 VRAAFEAAVERLQAAGALVER-------QAFPAFQE----------ILDLIARHGWLVTA 307
Query: 166 EFKNNHNEWIESVKPA-LDPDISA--EIGEMLEISETVIENCKSIRNEMRSAISSLLKDD 222
E H E ++ A +DP + +G + S+ + R + + ++ L
Sbjct: 308 EAFALHQERLDGPDAARMDPRVVKRTRLGRKITASDYI--ALLEARERLIAQVTREL-GG 364
Query: 223 GILVTPTTAYPPPKLGGKEMLSEDYQ------NRAFSLLSIASVSGCCQVTVPLGYYDK- 275
+L TPT A+ P L L D + + C V++P G
Sbjct: 365 ALLATPTVAHVAPPLAP---LEADDDLFFATNLKTLRNTMPGNFLDMCGVSLPCGTGAAG 421
Query: 276 CPTSVSFIARHGGDRFLLD 294
P + A G D LL
Sbjct: 422 MPVGLLLSAPAGRDERLLR 440
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 93.7 bits (233), Expect = 1e-20
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
+ GGSS G+A AVAA LV FSLG DT G +RVP++ CG+ G +P+YG +S G+ P S
Sbjct: 145 IAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPASLCGVFGLKPTYGRLSRQGVFPFVAS 204
Query: 61 LDTVGWFAR 69
LD VG FAR
Sbjct: 205 LDHVGPFAR 213
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 92.8 bits (231), Expect = 3e-20
Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 13/128 (10%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
GGSSSG+AVAVA LV F+LG DT G RVP+A I+G +P+ G VS G++P SL
Sbjct: 111 SGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSL 170
Query: 62 DTVGWFARD----PKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVI 117
D V FA ++LR + P++ L + P V V
Sbjct: 171 DCVSIFALTVADAEQVLRIAAAPDARDPYSRPLPAAA---------LRRFPPPPRVGVPR 221
Query: 118 KSTEKLFG 125
+ + FG
Sbjct: 222 AAQLEFFG 229
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 90.4 bits (225), Expect = 1e-19
Identities = 35/68 (51%), Positives = 49/68 (72%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
PGGSSSGAAV+VA + +LG DT G +R+P+A CG+ GF+P+ V G +P+ST+L
Sbjct: 157 PGGSSSGAAVSVADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTL 216
Query: 62 DTVGWFAR 69
D++G AR
Sbjct: 217 DSIGPLAR 224
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 84.7 bits (210), Expect = 1e-17
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
+ GGSSSG+A A + F++G DT VR+P++F G +GF+PSYGA+S G+ ++S
Sbjct: 116 LVGGSSSGSA-ATFNKNISFAIGSDTGDSVRLPASFIGKVGFKPSYGAISRYGLFAYASS 174
Query: 61 LDTVGWFAR---DPKILRHV 77
LDTV +F D IL V
Sbjct: 175 LDTVAYFTHNVNDAIILSKV 194
Score = 30.4 bits (69), Expect = 2.2
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 205 KSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCC 264
K +R +++ S+ I++ P A P + E S++Y + +L+I+++ G
Sbjct: 338 KKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENKSDNYMD---YILTISNLVGNP 394
Query: 265 QVTVPLGYYDKCPTSVS 281
+++PLG Y+ P +++
Sbjct: 395 SLSIPLGKYNNLPFNLA 411
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 83.5 bits (207), Expect = 3e-17
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
GGSSSG+A VAA VD ++G D G +R+PSA+CGI G +P++G V + G PI +
Sbjct: 167 SAGGSSSGSAALVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKPTHGLVPYTGAFPIERT 226
Query: 61 LDTVGWFAR 69
+D +G
Sbjct: 227 IDHLGPMTA 235
Score = 37.7 bits (88), Expect = 0.012
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 204 CKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIAS---V 260
+++ +R+A L+ +LV PTT L + E+Y +RA +++ + V
Sbjct: 399 ARNLARRLRAAYDEALRKYDLLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDV 458
Query: 261 SGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL 293
+G ++VP G D P + + RH + +L
Sbjct: 459 TGHPAMSVPCGLVDGLPVGLMLVGRHFDEATIL 491
>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat.
Length = 69
Score = 75.0 bits (185), Expect = 4e-17
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEAD 382
+AE K GN +K + +AI Y +A++L+ +NA Y N A AYL+ G + +A D
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 383 CTKAINLDK 391
KA+ LD
Sbjct: 61 LEKALELDP 69
Score = 61.2 bits (149), Expect = 3e-12
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY-YKEAIED 416
+NA N A + G + +A KA+ LD N +AY A LG Y+EA+ED
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 417 FSYALVLEP 425
AL L+P
Sbjct: 61 LEKALELDP 69
Score = 30.0 bits (68), Expect = 0.36
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
N +A G A LG Y EAIE + AL L+P N A
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEA 39
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 78.9 bits (194), Expect = 1e-15
Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 302 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 361
E +I S + + +K+ A KEKGN+AY++K + KAI Y++AI+ +
Sbjct: 103 PADELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK-PDPV 161
Query: 362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 421
YYSNRAA + G + + D T A+ LD KA RR A + LG Y +A+ D + +
Sbjct: 162 YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASC 221
Query: 422 VLEPTNKRASLSA-DRLRKVF 441
+++ S A +RL K F
Sbjct: 222 IIDGFRNEQSAQAVERLLKKF 242
Score = 41.5 bits (97), Expect = 8e-04
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403
KA + +A+KLN + Y +RA + G F QA D K+I+LD + ++++ G
Sbjct: 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442
Query: 404 REMLGYYKEAIEDFSYAL 421
+ G ++ F
Sbjct: 443 QYKEGSIASSMATFRRCK 460
Score = 41.5 bits (97), Expect = 8e-04
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 321 NQKQSAEIAKEKGN---QAYKDKQWLKAISFYTEAI----------KLNGNNATYYSNRA 367
+ S E+ +E GN Q KA Y EA KL A + R
Sbjct: 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRG 338
Query: 368 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
G L+A AD +K+I LD + ++Y++R + LG +A EDF AL L +
Sbjct: 339 TFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED 398
Score = 39.6 bits (92), Expect = 0.003
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 343 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402
L+A++ +++I+L+ Y RA+ LE G +AE D KA+ L+ ++ Y R
Sbjct: 348 LEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ 407
Query: 403 AREMLGYYKEAIEDFSYALVLEPTN 427
+ G + +A +D+ ++ L+P
Sbjct: 408 LHFIKGEFAQAGKDYQKSIDLDPDF 432
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 77.3 bits (190), Expect = 3e-15
Identities = 33/71 (46%), Positives = 44/71 (61%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
GSSSG+A VAAD ++G +T G + P+A ++G RPS G VS GIIP++ +L
Sbjct: 224 TSGSSSGSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETL 283
Query: 62 DTVGWFARDPK 72
DT G AR K
Sbjct: 284 DTAGPMARTVK 294
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 76.3 bits (188), Expect = 6e-15
Identities = 32/68 (47%), Positives = 43/68 (63%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
P GSSSG+ AVAA L ++G +T G + P+A G++G +P+ G VS GI+PIS S
Sbjct: 159 PCGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQ 218
Query: 62 DTVGWFAR 69
DT G R
Sbjct: 219 DTAGPMTR 226
Score = 32.0 bits (73), Expect = 0.57
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 214 AISSLLKDDGI--LVTPTT--AYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVP 269
I + LK+ + LV PTT A+ + G + A+V+G +TVP
Sbjct: 398 GIDAALKEHRLDALVAPTTGPAWLIDLINGDSFGGSSS--------TPAAVAGYPHLTVP 449
Query: 270 LGYYDKCPTSVSFI 283
+G P +SFI
Sbjct: 450 MGQVQGLPVGLSFI 463
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 74.4 bits (183), Expect = 2e-14
Identities = 33/69 (47%), Positives = 48/69 (69%)
Query: 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
+PGGSSSGAAV+VA + ++G DT G VR+P+A G++GF+P+ + G P+S S
Sbjct: 126 IPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNGLVGFKPTARRIPLEGAFPLSPS 185
Query: 61 LDTVGWFAR 69
LD++G AR
Sbjct: 186 LDSIGPLAR 194
Score = 44.4 bits (105), Expect = 8e-05
Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 6/139 (4%)
Query: 171 HNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTT 230
H +W+ + +D + + +++ R + A+ L + P T
Sbjct: 287 HADWLADLDANVDIRVKRPLSRRIKVPLEAYHRLMRTRAALARAMDERLAGFDMFALPAT 346
Query: 231 AYPPPKLGGKEMLSEDYQNRAFSLL----SIASVSGCCQVTVPLGYYDKCPTSVSFIARH 286
P + E+Y +R +LL +A+ C +T+P+ P + AR+
Sbjct: 347 PIVAPTIASVSEDEEEY-DRVENLLLRNTQVANQFDLCSITLPMPGM-ALPAGLMLTARN 404
Query: 287 GGDRFLLDTVQNMYASLQE 305
G DR LL ++ L+
Sbjct: 405 GSDRRLLAAAASVEKLLEH 423
>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1;
Provisional.
Length = 356
Score = 73.3 bits (180), Expect = 3e-14
Identities = 41/104 (39%), Positives = 59/104 (56%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
A+ ++K +A+ D + A+ YT+AI L+ NNA Y++RA A ++ G+F +A AD K
Sbjct: 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANK 61
Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429
AI LD KAYLR+GTA L Y+ A L P + R
Sbjct: 62 AIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSR 105
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 73.5 bits (181), Expect = 4e-14
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 17/90 (18%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAV-----SHMGII- 55
GGSS GAA AVA + S+G D G VR+P++FCG GF+P++G V S G +
Sbjct: 153 AGGSSGGAAAAVALGMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGRVPLYPASPFGTLA 212
Query: 56 ---PISTS-------LDTVGWF-ARDPKIL 74
P++ + LD + ARD L
Sbjct: 213 HVGPMTRTVADAALLLDVIARPDARDWSAL 242
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 71.4 bits (175), Expect = 2e-13
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
GGSS+G+A+AVAA+ S+G +T G + P+ ++G +P+ G +S GIIP + S
Sbjct: 169 VGGSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQ 228
Query: 62 DTVGWFAR---DPKIL 74
DT G FAR D IL
Sbjct: 229 DTAGPFARTVTDAAIL 244
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 69.9 bits (171), Expect = 6e-13
Identities = 78/329 (23%), Positives = 124/329 (37%), Gaps = 57/329 (17%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
PGGSS G+A AVAA L +LG D G +R+PS +CG+ G +P +S L
Sbjct: 152 PGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGAWQGL 211
Query: 62 DTVGWFAR---DPKILRHVGHVL--LQLPF--AAQRSPRQIIIADDCFELLKIPADRVVQ 114
G AR D +L + + F AA R P ++ IA ++P V+
Sbjct: 212 SVNGPIARSVMDAALLLDATTTVPGPEGEFVAAAAREPGRLRIALS----TRVPTPLPVR 267
Query: 115 V------VIKSTEKL---FGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY 165
+ L G V+ + +Y + + L R I
Sbjct: 268 CGKQELAAVHQAGALLRDLGHDVVVRDP--DYPA---ATYANY------LPRFFRGISDD 316
Query: 166 EFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGIL 225
H + +E+ A+ A +G S+ + ++ + + I S+ D ++
Sbjct: 317 ADAQAHPDRLEARTRAI-----ARLGSF--FSDRRMAALRAAEVVLSARIQSIFDDVDVV 369
Query: 226 VTPTTAYPPPKLGGKEMLSEDYQNRAF--SLLSIASVSGCCQV---------TVPLGY-Y 273
VTP TA P ++G YQ R +LL + QV VP +
Sbjct: 370 VTPGTATGPSRIGA-------YQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDG 422
Query: 274 DKCPTSVSFIARHGGDRFLLDTVQNMYAS 302
D P SV + R + LL + ++
Sbjct: 423 DGLPMSVQLVGRPYDEATLLALAAQIESA 451
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 63.9 bits (156), Expect = 5e-11
Identities = 36/110 (32%), Positives = 48/110 (43%), Gaps = 19/110 (17%)
Query: 3 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSH----------- 51
GGSS GAA A+A ++ + G D +G +R P+AF + GFRPS G V H
Sbjct: 159 GGSSGGAAAALALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVPHGPGGDVFVQQL 218
Query: 52 -----MG--IIPISTSLDT-VGWFARDPKILRHVGHVLLQLPFAAQRSPR 93
MG + ++ L G+ RDP L Q A R R
Sbjct: 219 GTEGPMGRTVEDVALLLAVQAGYDPRDPLSLAEDPARFAQPLEADLRGKR 268
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 63.1 bits (154), Expect = 9e-11
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP 56
PGGSS G+A A+AA S+G D G +RVP+ +CG+ +P+ G V G IP
Sbjct: 156 PGGSSGGSAAALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIP 210
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 60.8 bits (148), Expect = 6e-10
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAV 49
PGGSS+GA A AA LG D G VR+P+ +CGI+G +PS G +
Sbjct: 152 PGGSSAGAGAAAAAGYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRI 199
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 60.4 bits (146), Expect = 1e-09
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
P GSSSG+A A +D ++G +T G + P++ +G++PS G V++ GIIP+S+
Sbjct: 315 PSGSSSGSATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRF 374
Query: 62 DTVGWFAR 69
DT G R
Sbjct: 375 DTPGPLTR 382
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 58.9 bits (143), Expect = 2e-09
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVS 50
PGGSS G+A AVAA LV ++G D G VR+P+A+ ++G +P G +S
Sbjct: 161 PGGSSGGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTHLVGIKPQRGRIS 209
Score = 29.7 bits (67), Expect = 3.7
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 173 EWIESVKPALDPD----ISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTP 228
+W E + + D +A +G +L S+ ++ ++ + + S+ +++ P
Sbjct: 331 DWAERLGDPVLLDPRTVSNARMGRLL--SQAILRLARAAEAAAQRRVGSIFDIVDVVLAP 388
Query: 229 TTAYPPPKLG 238
TTA PPP++G
Sbjct: 389 TTAQPPPRVG 398
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 56.1 bits (136), Expect = 1e-08
Identities = 34/99 (34%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAV-------SHMGI 54
PGGSS GAA AVAA + + G D G +R P+ CG+ G RP+ G V I
Sbjct: 153 PGGSSGGAAAAVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPI 212
Query: 55 IPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPR 93
S + P + R V + L L A PR
Sbjct: 213 GAQLMS-------VQGP-LARTVADLRLALAAMAAPDPR 243
>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only].
Length = 291
Score = 55.2 bits (131), Expect = 2e-08
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEA 381
+ AE G ++ +A+ +A+KLN ++ A N YL+ G + +A
Sbjct: 164 NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALE 223
Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
KA+ LD N +A LG Y+EA+E AL L+P
Sbjct: 224 YYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267
Score = 51.4 bits (121), Expect = 3e-07
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 337 YKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 393
Y+ + +A+ Y +A++L+ A A G + +A KA+ L+ +
Sbjct: 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD 200
Query: 394 -VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A L G LG Y+EA+E + AL L+P N A
Sbjct: 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEA 238
Score = 47.9 bits (112), Expect = 4e-06
Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 4/154 (2%)
Query: 283 IARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQW 342
+ + LL + L + + + AE G ++
Sbjct: 52 LLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY 111
Query: 343 LKAISFYTEAIKLNGNNATYYSNRA-AAYLESGSFLQAEADCTKAINLDKKN---VKAYL 398
+A+ +A+ L+ + + A A E G + +A KA+ LD + +A L
Sbjct: 112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALL 171
Query: 399 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 432
G E LG Y+EA+E AL L P + +L
Sbjct: 172 ALGALLEALGRYEEALELLEKALKLNPDDDAEAL 205
Score = 40.2 bits (92), Expect = 0.002
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAE 380
++ + + + +A+ EA++L N + A A A L+ G +A
Sbjct: 20 AEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEAL 79
Query: 381 ADCTKAIN--LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
KA+ L +A L G E LG Y+EA+E AL L+P A
Sbjct: 80 ELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLA 131
Score = 35.2 bits (79), Expect = 0.061
Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 10/134 (7%)
Query: 292 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE 351
LL+ + L E A+ + + A + K + +A+ +
Sbjct: 25 LLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEK 84
Query: 352 AIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK--------KNVKAYLRRG 401
A++ L N A N G + +A KA+ LD + A G
Sbjct: 85 ALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG 144
Query: 402 TAREMLGYYKEAIE 415
E L Y++A+E
Sbjct: 145 DYEEALELYEKALE 158
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 49.2 bits (118), Expect = 3e-06
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 19/97 (19%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYG------AVSHMGII 55
G SS G+A VAA +V + D G +R+P+A CG++G +PS G + + +
Sbjct: 154 AGASSGGSAALVAAGVVPIAHANDGGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVN 213
Query: 56 PIS------TSLDTVGWFA------RDPKILRHVGHV 80
++ T DT ++ R+PK L +G V
Sbjct: 214 IVANGVLTRTVRDTAAFYREAERYYRNPK-LPPIGDV 249
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat
lipoprotein. This protein family occurs in strictly
within a subset of Gram-negative bacterial species with
the proposed PEP-CTERM/exosortase system, analogous to
the LPXTG/sortase system common in Gram-positive
bacteria. This protein occurs in a species if and only
if a transmembrane histidine kinase (TIGR02916) and a
DNA-binding response regulator (TIGR02915) also occur.
The present of tetratricopeptide repeats (TPR) suggests
protein-protein interaction, possibly for the regulation
of PEP-CTERM protein expression, since many PEP-CTERM
proteins in these genomes are preceded by a proposed DNA
binding site for the response regulator.
Length = 899
Score = 48.2 bits (115), Expect = 7e-06
Identities = 29/96 (30%), Positives = 44/96 (45%)
Query: 338 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 397
+ + +AI+ + A+ L+ ++ S AYL G F +A KA LD +N A
Sbjct: 341 RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAAR 400
Query: 398 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 433
+ G ++ G EAI D A L+P RA L
Sbjct: 401 TQLGISKLSQGDPSEAIADLETAAQLDPELGRADLL 436
Score = 38.5 bits (90), Expect = 0.007
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
A + GN+ +A+++ +A +LN A YL G +A A +
Sbjct: 540 AGLYLRTGNEE-------EAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE 592
Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
A + + +A+L G A+ G +A+ F L L+P +
Sbjct: 593 AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634
Score = 36.2 bits (84), Expect = 0.038
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 2/117 (1%)
Query: 323 KQSAEIAKEKGNQAY--KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 380
EI Y Q KA++ EA ++ + A L +G +A
Sbjct: 562 LNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621
Query: 381 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437
+ K + L + A L A ++ Y +AI AL L+P N A + +L
Sbjct: 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678
Score = 35.8 bits (83), Expect = 0.046
Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 17/132 (12%)
Query: 311 TKSKLSTNTFNQ-------------KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG 357
++ L F Q + +AE+ +G Q A Y +A+ ++
Sbjct: 97 ARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDP 156
Query: 358 NNATYYSNRAAAYL--ESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 415
+ Y+ A L F +A A + + D NV A L +G LG + A+
Sbjct: 157 RSL--YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALA 214
Query: 416 DFSYALVLEPTN 427
+ A+ L P N
Sbjct: 215 AYRKAIALRPNN 226
Score = 35.4 bits (82), Expect = 0.061
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 13/117 (11%)
Query: 303 LQEQADIATKSKLSTNTFNQK------QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 356
Q ++A KS + + A++A + +A + E + +
Sbjct: 137 GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFD-------EARALIDEVLTAD 189
Query: 357 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 413
N + L G+ A A KAI L N+ L T G ++EA
Sbjct: 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA 246
Score = 34.3 bits (79), Expect = 0.16
Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 11/135 (8%)
Query: 307 ADIATKSKLSTNTFNQKQSAEIAK---EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 363
A I K+ L + + + + K G+ A +K+ KA+S N
Sbjct: 41 AIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSL-----GYPKNQVLPL 95
Query: 364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR-RGTAREMLGYYKEAIEDFSYALV 422
RA YL G F Q + LD + L RG A LG + A + + AL
Sbjct: 96 LARA--YLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALA 153
Query: 423 LEPTNKRASLSADRL 437
++P + A L +L
Sbjct: 154 IDPRSLYAKLGLAQL 168
Score = 34.3 bits (79), Expect = 0.16
Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 3/137 (2%)
Query: 293 LDTVQNMYASLQEQA-DIATKSKLSTNTFNQKQ-SAEIAKEKGNQAYKDKQWLKAISFYT 350
Q A L A + K++ + Q +A + +G+ + K + AI Y
Sbjct: 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR 727
Query: 351 EAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY 410
+A+K ++ A L SG+ +A + + Y
Sbjct: 728 KALKRAPSSQN-AIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY 786
Query: 411 KEAIEDFSYALVLEPTN 427
+AI+ + + P N
Sbjct: 787 DKAIKHYQTVVKKAPDN 803
Score = 32.0 bits (73), Expect = 0.85
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 335 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 394
+ Q+ KA++ + K +NA+ ++ A YL G +A KA++++
Sbjct: 440 SYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFF 499
Query: 395 KA--YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 432
A L R +E G +AI+ F L ++P N RA L
Sbjct: 500 PAAANLARIDIQE--GNPDDAIQRFEKVLTIDPKNLRAIL 537
Score = 30.4 bits (69), Expect = 2.6
Identities = 23/90 (25%), Positives = 35/90 (38%)
Query: 345 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404
A++ Y +AI L NN A +E+G F +AE + + A+ +
Sbjct: 212 ALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVD 271
Query: 405 EMLGYYKEAIEDFSYALVLEPTNKRASLSA 434
Y++A E AL P A L A
Sbjct: 272 FQKKNYEDARETLQDALKSAPEYLPALLLA 301
Score = 30.1 bits (68), Expect = 2.6
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 380
Q +A + G KA + +A+ + + +N A ++ G+ A
Sbjct: 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519
Query: 381 ADCTKAINLDKKNVKA-------YLRRGTAREMLGYYKEAIE 415
K + +D KN++A YLR G E + + ++A E
Sbjct: 520 QRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561
Score = 29.7 bits (67), Expect = 4.3
Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 16/113 (14%)
Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
K + KAI Y +K +NA +N A YLE +A +A+ L
Sbjct: 777 AELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLE-LKDPRALEYAERALKLAPN 835
Query: 393 NV-------KAYLRRGTAREMLGYYKEAIE--------DFSYALVLEPTNKRA 430
+ +G A L ++A+ + AL L T ++A
Sbjct: 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKA 888
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 45.6 bits (108), Expect = 4e-05
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 3 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAV 49
GGSS GAA V++ +V + D G +R+P++F G++G +PS G +
Sbjct: 145 GGSSGGAAALVSSGIVALAAASDGGGSIRIPASFNGLIGLKPSRGRI 191
>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat.
Length = 65
Score = 40.0 bits (94), Expect = 1e-04
Identities = 17/62 (27%), Positives = 24/62 (38%)
Query: 366 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
A A L +G + +A A A+ +A L G A G EA AL +P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 426 TN 427
+
Sbjct: 63 DD 64
Score = 36.1 bits (84), Expect = 0.002
Identities = 11/60 (18%), Positives = 19/60 (31%)
Query: 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
A + + +A++ A+ A A L G +A A A+ D
Sbjct: 2 ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61
>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat.
Length = 34
Score = 36.6 bits (86), Expect = 7e-04
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
KA G A LG Y EA+E + AL L P N
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
Score = 33.5 bits (78), Expect = 0.007
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 393
A N AYL+ G + +A KA+ L+ N
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
Score = 29.3 bits (67), Expect = 0.28
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 359
A+ GN K ++ +A+ +Y +A++LN NN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 41.3 bits (97), Expect = 9e-04
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 4 GSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDT 63
GSS+GA A AA F L +T R P++ G+ + PS G +S G P++ ++D
Sbjct: 161 GSSNGAGTATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDV 220
Query: 64 VGWFAR 69
V +AR
Sbjct: 221 VVPYAR 226
>gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase
[Carbohydrate transport and metabolism].
Length = 389
Score = 40.5 bits (95), Expect = 0.001
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 22/155 (14%)
Query: 292 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE 351
LLD ++++ L ++ + A + +Q I + ++W KAI
Sbjct: 122 LLDRAEDIFNQLVDEGEFAEGAL--------QQLLNIYQ-------ATREWEKAIDVAER 166
Query: 352 AIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 406
+KL G A +Y A L S +A KA+ DKK V+A + G
Sbjct: 167 LVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA 226
Query: 407 LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 441
G Y++A+E + VLE + S + L + +
Sbjct: 227 KGDYQKAVE--ALERVLEQNPEYLSEVLEMLYECY 259
>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat. This Pfam entry
includes outlying Tetratricopeptide-like repeats (TPR)
that are not matched by pfam00515.
Length = 34
Score = 35.6 bits (83), Expect = 0.002
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
+A G A LG Y+EA+E + AL L+P N
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
Score = 30.9 bits (71), Expect = 0.064
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 393
A N AY + G + +A KA+ LD N
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
Score = 30.6 bits (70), Expect = 0.093
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 359
AE G YK + +A+ Y +A++L+ NN
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat.
Length = 78
Score = 36.6 bits (85), Expect = 0.002
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VKAYLRRGTAREMLGYYKE 412
A +N A G + +A KA+ L ++ +A LG Y E
Sbjct: 5 AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64
Query: 413 AIEDFSYAL 421
A+E AL
Sbjct: 65 ALEYLEKAL 73
Score = 35.4 bits (82), Expect = 0.005
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNRAAAYLESGSFLQ 378
A + + +A+ +A++L + A +N A YL G + +
Sbjct: 5 AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64
Query: 379 AEADCTKAINLDKK 392
A KA+ L +
Sbjct: 65 ALEYLEKALALREA 78
>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats. Repeats present in 4
or more copies in proteins. Contain a minimum of 34
amino acids each and self-associate via a "knobs and
holes" mechanism.
Length = 34
Score = 34.0 bits (79), Expect = 0.006
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 393
A N AYL+ G + +A KA+ LD N
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
Score = 33.2 bits (77), Expect = 0.012
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
+A G A LG Y EA+E + AL L+P N
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
Score = 30.1 bits (69), Expect = 0.14
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 359
AE GN K + +A+ +Y +A++L+ NN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
>gnl|CDD|205550 pfam13371, TPR_9, Tetratricopeptide repeat.
Length = 73
Score = 35.3 bits (82), Expect = 0.006
Identities = 19/71 (26%), Positives = 28/71 (39%)
Query: 368 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
A YL F +A A + + L + RG LG ++ A+ D Y L L P
Sbjct: 3 AIYLREEDFERALAVVERLLLLAPDDPYERRDRGLLYAQLGCFQAALADLEYFLELCPDA 62
Query: 428 KRASLSADRLR 438
A ++L
Sbjct: 63 PDAERIREQLA 73
>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 250
Score = 37.8 bits (88), Expect = 0.006
Identities = 22/68 (32%), Positives = 30/68 (44%)
Query: 360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSY 419
A A YL+ G + QA+ + KA+ D A+L R + LG A E +
Sbjct: 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRK 94
Query: 420 ALVLEPTN 427
AL L P N
Sbjct: 95 ALSLAPNN 102
>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat.
Length = 34
Score = 34.1 bits (79), Expect = 0.006
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 348 FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
Y +A++L+ NNA Y N A L G + +A
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
Score = 32.6 bits (75), Expect = 0.020
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 383 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 415
KA+ LD N +AY LG Y EA++
Sbjct: 2 YEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational
modification, protein turnover, chaperones].
Length = 287
Score = 37.7 bits (88), Expect = 0.009
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 345 AISFYTEAIKLNGNNATYYSNRAAA-YLESGSFLQAEAD--CTKAINLDKKNVKA--YLR 399
A+ Y A++L G+N A A Y ++G + A+A +A+ LD N++A L
Sbjct: 175 ALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL- 233
Query: 400 RGTAREMLGYYKEAIEDFSYALVLEPTN 427
A G Y EA + L L P +
Sbjct: 234 -AFAAFEQGDYAEAAAAWQMLLDLLPAD 260
>gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional.
Length = 389
Score = 36.3 bits (85), Expect = 0.029
Identities = 40/157 (25%), Positives = 60/157 (38%), Gaps = 26/157 (16%)
Query: 292 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAY-KDKQWLKAISFYT 350
LLD + ++ L ++ D A + Q EI Y ++K W KAI
Sbjct: 122 LLDRAEELFLQLVDEGDFAEGALQ--------QLLEI--------YQQEKDWQKAIDVAE 165
Query: 351 EAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 405
KL G++ A +Y A L G A A KA+ D + V+A + G
Sbjct: 166 RLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLAL 225
Query: 406 MLGYYKEAIEDFSYALVLEPTNKRA-SLSADRLRKVF 441
G Y AIE + V E + S +L + +
Sbjct: 226 AQGDYAAAIE--ALERVEE-QDPEYLSEVLPKLMECY 259
>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein
PilW. Members of this family are designated PilF in ref
(PMID:8973346) and PilW in ref (PMID:15612916). This
outer membrane protein is required both for pilus
stability and for pilus function such as adherence to
human cells. Members of this family contain copies of
the TPR (tetratricopeptide repeat) domain.
Length = 234
Score = 34.6 bits (80), Expect = 0.058
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 367 AAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426
A YLE G A+ + KA+ D + AYL + LG ++A + F AL L P
Sbjct: 38 ALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN 97
Query: 427 N 427
N
Sbjct: 98 N 98
Score = 31.2 bits (71), Expect = 0.95
Identities = 22/106 (20%), Positives = 46/106 (43%)
Query: 316 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS 375
S+ T ++ ++A+I + + A +A++ + ++ Y A Y + G
Sbjct: 21 SSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE 80
Query: 376 FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 421
+AE +A+ L+ N GT G Y++A++ F A+
Sbjct: 81 LEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAI 126
Score = 29.2 bits (66), Expect = 4.0
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 12/97 (12%)
Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403
KA + A+ LN NN +N + G + QA +AI Y + +
Sbjct: 83 KAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED-----PLYPQPARS 137
Query: 404 REMLGY-------YKEAIEDFSYALVLEPTNKRASLS 433
E G + +A + + AL ++P + L
Sbjct: 138 LENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE 174
>gnl|CDD|223054 PHA03359, PHA03359, UL17 tegument protein; Provisional.
Length = 686
Score = 34.6 bits (80), Expect = 0.11
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 21/106 (19%)
Query: 154 ELKNVMRLIQR--YEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEM 211
L+ RL Q Y+ +WI +I+ ++LE I+N +S
Sbjct: 488 ALQTEPRLSQLIEYDIPPRQRDWIT--------EIARRAPDLLEALLRAIQN-ESAEEFS 538
Query: 212 RSA-----ISSL-----LKDDGILVTPTTAYPPPKLGGKEMLSEDY 247
SA ++ L V A GG ++ DY
Sbjct: 539 NSALMSAVLAHLAARSTRGRGRGYVPYHRASLARLAGGDDVYLFDY 584
>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR
repeats [Intracellular trafficking and secretion].
Length = 257
Score = 32.8 bits (75), Expect = 0.25
Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 5/106 (4%)
Query: 292 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE 351
L T + + KS ++ E+ +G ++ + +A+S +
Sbjct: 71 KLATALYLRGDADSSLAVLQKSAIAYPK-----DRELLAAQGKNQIRNGNFGEAVSVLRK 125
Query: 352 AIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 397
A +L + ++ AA + G F +A +A+ L
Sbjct: 126 AARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIA 171
>gnl|CDD|198111 smart01043, BTAD, Bacterial transcriptional activator domain.
Found in the DNRI/REDD/AFSR family of regulators. This
region of AFSR along with the C terminal region is
capable of independently directing actinorhodin
production. This family contains TPR repeats.
Length = 145
Score = 31.5 bits (72), Expect = 0.35
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 366 RAAAYLESGSFLQAEAD---CTKAI-NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 421
AA L G L D L + ++A A LG ++EA+ L
Sbjct: 29 EAALALYRGPLLADVPDEDWAEAERERLRELRLEALEALAEALLALGRHEEALALLERLL 88
Query: 422 VLEPTNKRA 430
L+P +R
Sbjct: 89 ALDPLRERL 97
>gnl|CDD|217958 pfam04197, Birna_RdRp, Birnavirus RNA dependent RNA polymerase
(VP1). Birnaviruses are dsRNA viruses. This family
corresponds to the RNA dependent RNA polymerase. This
protein is also known as VP1. All of the birnavirus VP1
proteins contain conserved RdRp motifs that reside in
the catalytic "palm" domain of all classes of
polymerases. However, the birnavirus RdRps lack the
highly conserved Gly-Asp-Asp (GDD) sequence, a component
of the proposed catalytic site of this enzyme family
that exists in the conserved motif VI of the palm domain
of other RdRps.
Length = 855
Score = 32.9 bits (75), Expect = 0.39
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 16/79 (20%)
Query: 167 FKNNH-------NEWIESVKPALDPDISAEIGEMLEIS---ETVIENCK-SIRNEMRSAI 215
F NNH +W E+ KP ++ I+ E I+N + + + +A
Sbjct: 485 FLNNHLLSTIVVAKWSEAGKPNPMSKEFMDLEAKTGINFKIEREIKNLREKLIEAVETAP 544
Query: 216 SSLLKDDGILVTPTTAYPP 234
G L P
Sbjct: 545 -----QTGYLSDGVELPPE 558
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 32.7 bits (75), Expect = 0.46
Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 14/103 (13%)
Query: 130 KHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALD------ 183
+ L E D K + ++ + + K + VK A++
Sbjct: 321 AIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKA------KKVKAAIEELQAEF 374
Query: 184 PDISAEIGEMLEISETVIENCKSIRNE--MRSAISSLLKDDGI 224
D + E+ ++ + + +++ + E R ++ LLKD GI
Sbjct: 375 VDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGI 417
>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export
porin PgaA. Members of this protein family are the
poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin
PgaA of Gram-negative bacteria. There is no counterpart
in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis
systems of Gram-positive bacteria such as Staphylococcus
epidermidis. The PGA polysaccharide adhesin is a
critical determinant of biofilm formation. The conserved
C-terminal domain of this outer membrane protein is
preceded by a variable number of TPR repeats.
Length = 800
Score = 31.9 bits (73), Expect = 0.70
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 335 QAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 393
+AY++ KQW KA+ Y + ++ + NN A ++G +A + + +
Sbjct: 94 KAYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARFPTD 153
Query: 394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
Y + +A++ + AL LEP N A
Sbjct: 154 AARYEALAYVLRAAEDHLDALQAWQQALTLEPDNPEA 190
>gnl|CDD|214020 cd12955, SKA2, Spindle and kinetochore-associated protein 2. SKA2,
also called FAM33A, is a component of the SKA complex,
which is formed by the association of three subunits
(SKA1, SKA2, annd SKA3). The SKA complex is essential
for accurate cell division. It functions with the Ndc80
network to establish stable kinetochore-microtubule
interactions, which are crucial for the highly
orchestrated chromosome movements during mitosis. The
biological unit is a W-shaped homodimer of the
three-subunit complex. SKA2 has also been identified as
a glucocorticoid receptor-interacting protein and may be
involved in regulating cancer cell proliferation.
Length = 116
Score = 30.1 bits (68), Expect = 0.73
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 148 FHKTNGELKNVMRLIQRYEFKNNHNEWIESVKP--------ALDPDISAEIGEMLEISET 199
F K +L + R ++ EFK N E P A+ S + EI +
Sbjct: 8 FQKAESDLDYIQRRLE-SEFKENSPESAGEKNPVELLERLSAIKSRYSTLCAQAEEIKKA 66
Query: 200 VIENCKSIRNEMRSAISSLLK 220
E+ SIR ++ A+ L +
Sbjct: 67 QKESVSSIRAQLHKAMQLLQE 87
>gnl|CDD|239121 cd02656, MIT, MIT: domain contained within Microtubule Interacting
and Trafficking molecules. The MIT domain is found in
sorting nexins, the nuclear thiol protease PalBH, the
AAA protein spastin and archaebacterial proteins with
similar domain architecture, vacuolar sorting proteins
and others. The molecular function of the MIT domain is
unclear.
Length = 75
Score = 29.2 bits (66), Expect = 0.74
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP-TNKRASLSA 434
+A L K+ VK G E L YKEA++ AL E R L
Sbjct: 5 QAKELIKQAVK-EDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRK 54
>gnl|CDD|182415 PRK10370, PRK10370, formate-dependent nitrite reductase complex
subunit NrfG; Provisional.
Length = 198
Score = 29.9 bits (67), Expect = 1.8
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 345 AISFYTEAIKLNGNNATYYSNRAAA-YLESGSFL--QAEADCTKAINLDKKNVKAYLRRG 401
A+ Y +A++L G NA Y+ A Y ++G + Q KA+ LD V A +
Sbjct: 92 ALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA 151
Query: 402 TAREMLGYYKEAIE 415
+ M Y +AIE
Sbjct: 152 SDAFMQADYAQAIE 165
>gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3;
Provisional.
Length = 172
Score = 29.6 bits (67), Expect = 2.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 327 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 359
E A+E G+Q + + KA ++ +AI+L NN
Sbjct: 121 EKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153
Score = 28.1 bits (63), Expect = 5.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 387 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424
IN K Y R G + + G Y EA+E++ AL LE
Sbjct: 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE 65
>gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General
function prediction only].
Length = 297
Score = 29.8 bits (67), Expect = 2.4
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 301 ASLQEQADIATKSK-LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFY--TEAIKLNG 357
+LQ++ +A S+ L++ ++ A++ E+G D L+A++ ++A+ +
Sbjct: 39 PTLQQEVILARMSQILASRALTDEERAQLLFERGV--LYDSLGLRALARNDFSQALAIRP 96
Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
+ ++ ++G+F A + LD A+L RG A G YK A +D
Sbjct: 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156
>gnl|CDD|236624 PRK09782, PRK09782, bacteriophage N4 receptor, outer membrane
subunit; Provisional.
Length = 987
Score = 29.9 bits (67), Expect = 3.5
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 384
+A A+ GN A +D+ +A + G+NA Y+ A Y+ G A D T
Sbjct: 548 AANTAQAAGNGAARDRWLQQA------EQRGLGDNALYWWLHAQRYI-PGQPELALNDLT 600
Query: 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429
+++N+ R R+ A+ D AL LEP N
Sbjct: 601 RSLNIAPSANAYVARATIYRQR-HNVPAAVSDLRAALELEPNNSN 644
>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat.
Length = 34
Score = 25.9 bits (58), Expect = 4.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 393
A Y YL+ G + +A+ KA+ LD N
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
>gnl|CDD|225464 COG2912, COG2912, Uncharacterized conserved protein [Function
unknown].
Length = 269
Score = 28.8 bits (65), Expect = 4.9
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 368 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426
AA L + A + ++L+ ++ RG LG Y A+ED SY + P
Sbjct: 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247
>gnl|CDD|226038 COG3507, XynB, Beta-xylosidase [Carbohydrate transport and
metabolism].
Length = 549
Score = 28.9 bits (65), Expect = 5.7
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 133 NLGEYFDSKVPSLKGFHKTNGELK-NVMRLIQRYEFKNNHNEWIESVKPALDPDI 186
L +D+ +P +L+ +V R + + WI ++ LD I
Sbjct: 458 PLDGLYDNPIPL--PGMSEYVDLRTDVRRETYSFYYSFAGKTWI-TLGSVLDASI 509
>gnl|CDD|153316 cd07632, BAR_APPL2, The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor
protein, Phosphotyrosine interaction, PH domain and
Leucine zipper containing 2. BAR domains are
dimerization, lipid binding and curvature sensing
modules found in many different proteins with diverse
functions. Adaptor protein, Phosphotyrosine interaction,
PH domain and Leucine zipper containing (APPL) proteins
are effectors of the small GTPase Rab5 that function in
endosome-mediated signaling. They contain BAR,
pleckstrin homology (PH) and phosphotyrosine binding
(PTB) domains. They form homo- and hetero-oligomers that
are mediated by their BAR domains. Vertebrates contain
two APPL proteins, APPL1 and APPL2. Both APPL proteins
interact with the transcriptional repressor Reptin,
acting as activators of beta-catenin/TCF-mediated
trancription. APPL2 is essential for cell proliferation.
BAR domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions.
Length = 215
Score = 28.5 bits (63), Expect = 5.9
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 301 ASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA 360
AS + +A S+L N+K AE+AKE + KQ L ++ +Y NA
Sbjct: 117 ASNEHDLSMAKYSRLPKKRENEKVKAEVAKEVAYS--RRKQHLSSLQYYCAL------NA 168
Query: 361 TYYSNRAA 368
Y R A
Sbjct: 169 LQYRKRVA 176
>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response
chaperone LcrH/SycD. Genes in this family are found in
type III secretion operons. LcrH, from Yersinia is
believed to have a regulatory function in the
low-calcium response of the secretion system. The same
protein is also known as SycD (SYC = Specific Yop
Chaperone) for its chaperone role. In Pseudomonas, where
the homolog is known as PcrH, the chaperone role has
been demonstrated and the regulatory role appears to be
absent. ScyD/LcrH contains three central
tetratricopeptide-like repeats that are predicted to
fold into an all-alpha-helical array.
Length = 135
Score = 27.6 bits (62), Expect = 6.3
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 367 AAAY--LESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424
A AY + G + +A D N + +L +ML Y+EAI+ ++ A L+
Sbjct: 22 ALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81
Query: 425 PTNKRASLSA 434
P + R A
Sbjct: 82 PDDPRPYFHA 91
>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit;
Reviewed.
Length = 566
Score = 28.6 bits (64), Expect = 6.9
Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 24/82 (29%)
Query: 153 GELKNVM-RLIQRYEFKNNHNEWIESVK------PALDPDISAEIGEMLEISETVIENCK 205
G+ K + L+ NN +WIE V + D E V++
Sbjct: 326 GDAKKALQMLLAEPTVHNNTEKWIEKVTKDKNRVRSYDKK------------ERVVQPQA 373
Query: 206 SIRNEMRSAISSLLKDDGILVT 227
I I L D I+VT
Sbjct: 374 VIE-----RIGELTNGDAIVVT 390
>gnl|CDD|222956 PHA02992, PHA02992, hypothetical protein; Provisional.
Length = 728
Score = 28.9 bits (65), Expect = 7.2
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 130 KHENLGEY----FDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNH 171
+ E+LG Y FD L + T EL+ + + I RYE ++
Sbjct: 263 RKEDLGVYANIFFDDVAIDLTKYDLTKTELEIICKYIDRYEIYIDY 308
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 28.7 bits (64), Expect = 7.6
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 127 QVLKHENLGEYFDSKVPSLKGFH-KTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPD 185
+K ++ + ++++ L+G+ N LK++ + + IE ++
Sbjct: 340 DYIKKKSRYDDLNNQILELEGYEMDYNSYLKSI----------ESLKKKIEEYSKNIE-R 388
Query: 186 ISAEIGEMLEISETVIENCKSIRNEMRSAI 215
+SA I E+L+I E + K NE+ +
Sbjct: 389 MSAFISEILKIQEIDPDAIKKELNEINVKL 418
>gnl|CDD|99918 cd05535, POLBc_epsilon, DNA polymerase type-B epsilon subfamily
catalytic domain. Three DNA-dependent DNA polymerases
type B (alpha, delta, and epsilon) have been identified
as essential for nuclear DNA replication in eukaryotes.
DNA polymerase (Pol) epsilon has been proposed to play a
role in elongation of the leading strand during DNA
replication. Pol epsilon might also have a role in DNA
repair. The structure of pol epsilon is characteristic
of this family with the exception that it contains a
large c-terminal domain with an unclear function.
Phylogenetic analyses indicate that Pol epsilon is the
ortholog to the archaeal Pol B3 rather than to Pol
alpha, delta, or zeta. This might be because pol epsilon
is ancestral to both archaea and eukaryotes DNA
polymerases type B.
Length = 621
Score = 28.4 bits (64), Expect = 8.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 163 QRYEFKNNHNEWIESVKPALDPDISAEI 190
+RYE+K H W + ++ A +AEI
Sbjct: 234 RRYEYKGLHKVWKKKLEAAKAAGDAAEI 261
>gnl|CDD|146707 pfam04212, MIT, MIT (microtubule interacting and transport) domain.
The MIT domain forms an asymmetric three-helix bundle
and binds ESCRT-III (endosomal sorting complexes
required for transport) substrates.
Length = 69
Score = 26.0 bits (58), Expect = 9.3
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429
KA+ D+ G E L YKEAIE AL EP KR
Sbjct: 10 KKAVEADEA--------GNYEEALELYKEAIEYLLQALKYEPDPKR 47
>gnl|CDD|181241 PRK08130, PRK08130, putative aldolase; Validated.
Length = 213
Score = 27.9 bits (63), Expect = 9.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 215 ISSLLKDDGILVTPTTA 231
IS+ L D G LVTPT +
Sbjct: 30 ISARLDDGGWLVTPTGS 46
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.383
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,387,023
Number of extensions: 2186166
Number of successful extensions: 2281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2243
Number of HSP's successfully gapped: 130
Length of query: 442
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 342
Effective length of database: 6,502,202
Effective search space: 2223753084
Effective search space used: 2223753084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)