RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013459
(442 letters)
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 166 bits (421), Expect = 9e-50
Identities = 44/119 (36%), Positives = 68/119 (57%)
Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
+ AE K + N +K K + AI FY++AI+LN +NA YY NR+ AYL + + A
Sbjct: 9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG 68
Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
D T+AI LDKK +K Y RR + LG ++ A+ D+ + ++P +K A + K+
Sbjct: 69 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 163 bits (416), Expect = 2e-49
Identities = 40/117 (34%), Positives = 61/117 (52%)
Query: 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 382
A + K KGN+ ++ + +A+ YTEAIK N +A YSNRAA Y + F A D
Sbjct: 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD 72
Query: 383 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439
C + I L+ +K Y R+ A E + Y +A++ + AL L+ + K A+ R
Sbjct: 73 CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 162 bits (411), Expect = 7e-49
Identities = 36/117 (30%), Positives = 58/117 (49%)
Query: 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 382
+ A+ K KGN+ +K + A+ Y EA+K + NA YSNRAA + F +A D
Sbjct: 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDD 69
Query: 383 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439
C I LD K +K Y+R+ + + +A + AL ++P+N+ A +
Sbjct: 70 CDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 160 bits (408), Expect = 2e-48
Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
AE A+ +G + + W A+ YTE IK +A YSNRAAA + SF +A ADC
Sbjct: 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT--NKRASLSADRLRK 439
KAI D V+AY+R+ TA+ + Y A+E A + N ++ D+L
Sbjct: 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 119
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 160 bits (407), Expect = 2e-48
Identities = 37/116 (31%), Positives = 55/116 (47%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+ KEKGN+A A+ Y+EAIKL+ +N YSNR+AAY + G + +A D
Sbjct: 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439
K ++L K Y R+ A E L ++EA + L E N + +
Sbjct: 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 160 bits (408), Expect = 2e-48
Identities = 37/112 (33%), Positives = 58/112 (51%)
Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 380
+ SA+ KE+GN+ + +++ +A + Y AI N A YY+NRA YL+ QA
Sbjct: 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQAL 63
Query: 381 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 432
ADC +A+ LD ++VKA+ G + + Y EAI + A L +
Sbjct: 64 ADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 115
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 159 bits (403), Expect = 2e-47
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Query: 304 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---NNA 360
+ S E +++GN+ +K + A++ YT+A+ L+ + A
Sbjct: 6 SGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQA 65
Query: 361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA 420
+ NRAA +L+ + +AE + +KAI D +VKA RR A E LG +A+ D
Sbjct: 66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125
Query: 421 LVLEPTNKRASLSADRLRK 439
+ LEP NK + +
Sbjct: 126 VSLEPKNKVFQEALRNISG 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 158 bits (402), Expect = 2e-47
Identities = 43/109 (39%), Positives = 61/109 (55%)
Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
AE K +GN+ K + + A+ FY +AI+LN NA Y+ NRAAAY + G++ A
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67
Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
DC +AI +D KAY R G A L + EA+ + AL L+P N+
Sbjct: 68 DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY 116
Score = 31.8 bits (73), Expect = 0.15
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 389 LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
D + G + + ++ A+ + A+ L P N
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN 45
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 156 bits (397), Expect = 3e-46
Identities = 38/115 (33%), Positives = 55/115 (47%)
Query: 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL 377
+ ++ K +GN A K++ KAI YT+A+ + N Y SNRAAAY SG
Sbjct: 3 RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE 62
Query: 378 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 432
+A D A +D K KA+ R G AR + YK A E + + E ++
Sbjct: 63 KAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAM 117
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 153 bits (389), Expect = 7e-44
Identities = 37/108 (34%), Positives = 57/108 (52%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
SA+ KE+GN+ + +++ +A + Y AI N A YY+NRA YL+ QA ADC
Sbjct: 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS 431
+A+ LD ++VKA+ G + + Y EAI + A L +
Sbjct: 62 RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 143 bits (363), Expect = 9e-42
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+ A KE GN AYK K + A+ Y +A +L+ N TY +N+AA Y E G + + C
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 384 TKAINLDKKN-------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
KAI + ++N KAY R G + YK+AI ++ +L T
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD 113
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 142 bits (360), Expect = 2e-41
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
+A K+ GN AYK K + KA Y +AI+L+ +N T+Y+N+AA Y E F +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 382 DCTKAINLDKKN-------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
C KA+ + ++ KA R G A + A++ F +L +
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 132 bits (335), Expect = 6e-38
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
E KE+GN +K + +A+ Y + I N YSN+A A ++ G + QA C
Sbjct: 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV-LEPTNKRA 430
+ + +R L + A+ +V ++ +
Sbjct: 62 QQGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVVEVDELPEGY 108
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 131 bits (331), Expect = 1e-36
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 18/125 (14%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI------------------KLNGNNATYYSN 365
+S E ++KGN+ + K + +AI Y +A+ +L+ N Y+N
Sbjct: 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68
Query: 366 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
+ YL G +AE ++ + ++ N KA RR AR EA ED L P
Sbjct: 69 MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128
Query: 426 TNKRA 430
Sbjct: 129 AAASV 133
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 128 bits (324), Expect = 3e-33
Identities = 67/298 (22%), Positives = 117/298 (39%), Gaps = 27/298 (9%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
PGG+SSG+A AV A ++ +LG T G V P+A+CG +PS+ + +G+ S +L
Sbjct: 128 PGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWAL 187
Query: 62 DTVGWFARDPKILRHVGHVL----LQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVI 117
DTVG F + L + ++PR ++ + ++ A++ +Q I
Sbjct: 188 DTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAI 247
Query: 118 KSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES 177
K+ E+ G V + L E + +IQ +E
Sbjct: 248 KAAERA-GASVQAID-LPEAVHEAWR--------------IHPIIQDFEAHRALAWEFSE 291
Query: 178 VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKL 237
+ P + A + + ++ + + I R + + + +L+T + P
Sbjct: 292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAK 351
Query: 238 GGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 295
+ NR ++L+ G V VP+ P V IAR G D L T
Sbjct: 352 AL-ASTGDPRYNRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 122 bits (308), Expect = 5e-33
Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 16/132 (12%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI----------------KLNGNNATYYSNRA 367
QSA KE+GN+ +K + +AI Y EA+ K + N A
Sbjct: 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95
Query: 368 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
Y ++ + +A +K + +DK NVKA + G A G+ +EA E+ A L P N
Sbjct: 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155
Query: 428 KRASLSADRLRK 439
S +
Sbjct: 156 LDIRNSYELCVN 167
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 123 bits (312), Expect = 8e-33
Identities = 39/105 (37%), Positives = 54/105 (51%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
AE A+ +G + + W A+ YTE IK +A YSNRAAA + SF +A ADC K
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198
Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
AI D V+AY+R+ TA+ + Y A+E A +
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 243
Score = 101 bits (253), Expect = 2e-24
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
A+ K +GN+ YK +Q+ +AI Y +A +L+ + TY +NRAAA E G + A +
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLND 63
Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
A+ ++ Y + +G + D + +
Sbjct: 64 AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108
Score = 85.3 bits (212), Expect = 4e-19
Identities = 20/99 (20%), Positives = 33/99 (33%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
+ K + K + +N A Y + A T+ I
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
++ + Y R A L + EAI D + A+ +P RA
Sbjct: 171 EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 209
Score = 83.0 bits (206), Expect = 3e-18
Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 1/99 (1%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
+ Y+ ++ AIS +A++ Y + ++ G+ D K I +
Sbjct: 44 RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
K++ + R L ++ ++ + P
Sbjct: 104 KSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEE 141
Score = 78.0 bits (193), Expect = 2e-16
Identities = 7/99 (7%), Positives = 27/99 (27%), Gaps = 1/99 (1%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
+ + + I+ + T + A + + + ++
Sbjct: 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNP 136
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ + G + A++ ++ + P + R
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG 175
Score = 67.6 bits (166), Expect = 7e-13
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 336 AYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 394
A + +AI+ +AI+ + N Y +A A + + A A D +
Sbjct: 182 ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 241
Query: 395 KAYLRRGTAREMLGYYK 411
R + +
Sbjct: 242 NGSSAREIDQLYYKASQ 258
Score = 62.2 bits (152), Expect = 4e-11
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
+ A + ++ F +A KA L K++ R A G Y+ AI
Sbjct: 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTL 61
Query: 418 SYALVLEPTNKRA 430
+ A+ +
Sbjct: 62 NDAVEQGREMRAD 74
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 128 bits (323), Expect = 9e-33
Identities = 44/120 (36%), Positives = 68/120 (56%)
Query: 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 382
+ AE K + N +K K + AI FY++AI+LN +NA YY NR+ AYL + + A D
Sbjct: 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD 62
Query: 383 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM 442
T+AI LDKK +K Y RR + LG ++ A+ D+ + ++P +K A + K+
Sbjct: 63 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 122
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 124 bits (314), Expect = 1e-31
Identities = 32/117 (27%), Positives = 44/117 (37%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
E E G + Q A+S + A+ + +N Y RA +L G A D
Sbjct: 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 83
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
TK I L A L+RG G EA +DF L P+ + +L K
Sbjct: 84 TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140
Score = 106 bits (266), Expect = 3e-25
Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 4/117 (3%)
Query: 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY----YSNRAAAYLES 373
+ Q + E + +D ++ A S Y +K + A Y + +
Sbjct: 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308
Query: 374 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
++A C++ + ++ NV A R A + Y EAI+D+ A +++
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365
Score = 96.3 bits (240), Expect = 9e-22
Identities = 22/119 (18%), Positives = 53/119 (44%)
Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
+ + + + A+ + AI+F + +++ +A RA +++ G +A +
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198
Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
D A L N +A+ + T LG ++ ++ + L L+ +KR +++K+
Sbjct: 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 257
Score = 78.2 bits (193), Expect = 9e-16
Identities = 20/127 (15%), Positives = 48/127 (37%), Gaps = 12/127 (9%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
AE+ + + K+ + KAIS A KL +N + + Y + G + ++
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234
Query: 384 TKAINLDKKNVKAYLRRGTAREM------------LGYYKEAIEDFSYALVLEPTNKRAS 431
+ + LD+ + + + +++ G Y +A + + EP+ +
Sbjct: 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294
Query: 432 LSADRLR 438
+ +
Sbjct: 295 VRSKERI 301
Score = 76.3 bits (188), Expect = 3e-15
Identities = 16/97 (16%), Positives = 39/97 (40%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
+ KD++ ++AI +E +++ +N +RA AYL + +A D A ++
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
+ + A+ +L ++ + +
Sbjct: 361 NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397
Score = 75.5 bits (186), Expect = 5e-15
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 15/114 (13%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS---------------NRAAAYLESGSF 376
+G+ K + +A + + +K N + ++A SG +
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159
Query: 377 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
A A K + + + + R G ++AI D A L+ N A
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213
Score = 45.4 bits (108), Expect = 2e-05
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 18/113 (15%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+ K++ ++ + +AI Y A + N N+ A + +
Sbjct: 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK 386
Query: 384 TKAINLDKKN---VKAYLR---------------RGTAREMLGYYKEAIEDFS 418
+ + K +KAY + + A + A E S
Sbjct: 387 ILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLS 439
Score = 28.5 bits (64), Expect = 5.1
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 395 KAYLRRGTAREMLGYYKEAIEDFSYAL 421
+ G Y +++ D L
Sbjct: 4 HHHHSSGVDLGTENLYFQSMADVEKHL 30
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 118 bits (299), Expect = 4e-30
Identities = 32/115 (27%), Positives = 45/115 (39%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
E E G + Q A+S + A+ + +N Y RA +L G A D TK
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
I L A L+RG G EA +DF L P+ + + +L K
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117
Score = 107 bits (269), Expect = 4e-26
Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 4/117 (3%)
Query: 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY----YSNRAAAYLES 373
+ Q + E + +D ++ A S Y +K + A Y + +
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285
Query: 374 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
++A C++ + ++ NV A R A + Y EAI+D+ A +++
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342
Score = 95.4 bits (238), Expect = 8e-22
Identities = 21/109 (19%), Positives = 48/109 (44%)
Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
+ + + + A+ + AI+F + +++ +A RA +++ G +A +
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175
Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
D A L N +A+ + T LG ++ ++ + L L+ +KR
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC 224
Score = 77.3 bits (191), Expect = 9e-16
Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 12/123 (9%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
AE+ + + K+ + KAIS A KL +N + + Y + G + ++
Sbjct: 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV 211
Query: 384 TKAINLDKKNVKAYLRRGTAREM------------LGYYKEAIEDFSYALVLEPTNKRAS 431
+ + LD+ + + + +++ G Y +A + + EP+ +
Sbjct: 212 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYT 271
Query: 432 LSA 434
+ +
Sbjct: 272 VRS 274
Score = 73.8 bits (182), Expect = 1e-14
Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 15/114 (13%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNR---------------AAAYLESGSF 376
+G+ K + +A + + +K N + A + +
Sbjct: 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136
Query: 377 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
A K + + + + R G ++AI D A L+ N A
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA 190
Score = 72.3 bits (178), Expect = 4e-14
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 359 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFS 418
+ + L +G A + A++ D N AY RR T +G K A+ D +
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 419 YALVLEPTNKRA 430
+ L+ A
Sbjct: 62 KVIALKMDFTAA 73
Score = 70.0 bits (172), Expect = 2e-13
Identities = 16/81 (19%), Positives = 37/81 (45%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
+ KD++ ++AI +E +++ +N +RA AYL + +A D A ++
Sbjct: 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337
Query: 392 KNVKAYLRRGTAREMLGYYKE 412
+ + A+ +L ++
Sbjct: 338 NDQQIREGLEKAQRLLKQSQK 358
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 118 bits (296), Expect = 5e-30
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 15/133 (11%)
Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI---------------KLNGNNATYYSNR 366
+ + + I KE+G +K+ ++ +A+ Y + + K + N
Sbjct: 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202
Query: 367 AAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426
A +L+ +F A C KA+ LD N K RRG A + ++ A DF L L P
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262
Query: 427 NKRASLSADRLRK 439
NK A ++
Sbjct: 263 NKAAKTQLAVCQQ 275
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 117 bits (295), Expect = 7e-29
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
+ + A K+KGNQ +++K++ AI +Y A++L + +YSN +A Y+ G +
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVE 60
Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFS-YALVLEPTNKRASLSADRLRK 439
TKA+ L K LRR +A E LG + +A+ D S +L + + +R
Sbjct: 61 MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN 119
Score = 99.8 bits (249), Expect = 7e-23
Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 14/174 (8%)
Query: 270 LGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKS-------------KLS 316
G + T ++ + D+ L++ + N+Y E D A +S K +
Sbjct: 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227
Query: 317 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF 376
+ +++ A + G + L A +AI+L Y A +
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDS 286
Query: 377 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ KA+ LD N Y RG +L Y +A +DF A L+P N
Sbjct: 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP 340
Score = 96.4 bits (240), Expect = 1e-21
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 9/116 (7%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ----- 378
++ E+ + KA+ Y AI+L Y A ++ +
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429
Query: 379 ----AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
A KA LD ++ +A + + EAI F + L T +
Sbjct: 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485
Score = 89.4 bits (222), Expect = 2e-19
Identities = 14/99 (14%), Positives = 33/99 (33%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
+G + + + +A + +A +L+ N Y A F E ++A
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ + + +A++ + A+ LE
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408
Score = 84.8 bits (210), Expect = 7e-18
Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 9/108 (8%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
AY++ ++ + ++EA + + A + F +A AI L+
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403
Query: 392 KNVKAYLRRGTA---------REMLGYYKEAIEDFSYALVLEPTNKRA 430
K Y+ + + EA A L+P +++A
Sbjct: 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451
Score = 84.8 bits (210), Expect = 7e-18
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 336 AYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 394
D+ + +++ +A+KL+ NN++ Y +R ++ QA D KA LD +N+
Sbjct: 279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI 338
Query: 395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
Y++ + + FS A P
Sbjct: 339 FPYIQLACLAYRENKFDDCETLFSEAKRKFPEA 371
Score = 74.8 bits (184), Expect = 1e-14
Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 3/114 (2%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK-AINLD 390
K + T+A++L + + RA+A G F A D + ++N D
Sbjct: 45 LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104
Query: 391 KKN--VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM 442
+ ++ L R ++ + KE D A + ++ +
Sbjct: 105 FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158
Score = 62.8 bits (153), Expect = 8e-11
Identities = 19/131 (14%), Positives = 34/131 (25%), Gaps = 16/131 (12%)
Query: 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES---- 373
KQ + + + + Y E+ + + SN ES
Sbjct: 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKA 208
Query: 374 --------GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
F + + L +K + G + + A ED A+ L P
Sbjct: 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP 268
Query: 426 T----NKRASL 432
A +
Sbjct: 269 RVNSYIYMALI 279
Score = 59.8 bits (145), Expect = 8e-10
Identities = 9/77 (11%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 340 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399
+ +++A + +A KL+ + A L+ +A ++ +L + +
Sbjct: 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL-- 486
Query: 400 RGTAREMLGYYKEAIED 416
+ ++ I
Sbjct: 487 QAITFAEAAKVQQRIRS 503
Score = 29.7 bits (67), Expect = 2.0
Identities = 5/41 (12%), Positives = 11/41 (26%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE 372
+ + +AI+ + E+ L A
Sbjct: 455 LAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAA 495
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 110 bits (278), Expect = 2e-26
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 380
++ A K +GN + K + +AI +Y AI+L+ N +YSN +A Y+ +G +
Sbjct: 20 QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVI 79
Query: 381 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 438
TKA+ + + KA LRR +A E LG + +A+ D S L L AS+ R
Sbjct: 80 EFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLER 136
Score = 90.6 bits (225), Expect = 1e-19
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 1/109 (0%)
Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
++ +A G + L A E+I L+ +Y A + + +
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYI-FLALTLADKENSQEFFK 297
Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
KA++L+ + Y RG +L YK A EDF A L P N
Sbjct: 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP 346
Score = 87.5 bits (217), Expect = 1e-18
Identities = 20/96 (20%), Positives = 37/96 (38%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
+ + F+ +A+ LN Y +R Y + A+ D KA +L+
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
+NV Y++ G + E+ F+ + PT
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377
Score = 84.0 bits (208), Expect = 1e-17
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 1/97 (1%)
Query: 335 QAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 393
Q Y + + A + +A LN N Y A + G F ++EA +
Sbjct: 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377
Query: 394 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ G + AI+ + A LE ++
Sbjct: 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414
Score = 82.5 bits (204), Expect = 4e-17
Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 18/124 (14%)
Query: 324 QSAEIAKEKGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAA------------- 369
E+ D+ AI Y A +L +
Sbjct: 376 TLPEVPTFFAE-ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434
Query: 370 ---YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 426
L+ F A TKA LD ++ +A + + + EAIE F + +L T
Sbjct: 435 DPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494
Query: 427 NKRA 430
Sbjct: 495 MDEK 498
Score = 79.4 bits (196), Expect = 4e-16
Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
YK ++ ++ +F+ E + A + G F A A L++
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409
Query: 392 KNVKAYLRRGTA----------------REMLGYYKEAIEDFSYALVLEPTNKRA 430
K ++ G + + AI+ + A L+P +++A
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA 464
Score = 74.4 bits (183), Expect = 2e-14
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 344 KAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399
+ L+ + A NR + + +F +A AI LD Y
Sbjct: 5 NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSN 64
Query: 400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
G ++ IE + AL ++P + +A
Sbjct: 65 ISACYISTGDLEKVIEFTTKALEIKPDHSKA 95
Score = 71.7 bits (176), Expect = 1e-13
Identities = 17/153 (11%), Positives = 39/153 (25%), Gaps = 12/153 (7%)
Query: 292 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQA------YKDKQWLKA 345
+L+ N A +++ + S + + A
Sbjct: 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTA 192
Query: 346 ISFYTEAIKLNGNNATYYSNRAAAYLE--SGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403
+ ++A++ + A L + + + T L + A G
Sbjct: 193 YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252
Query: 404 REMLGYYKEAIEDFSYALVLEPT----NKRASL 432
+ +A ++ L PT A
Sbjct: 253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALT 285
Score = 63.2 bits (154), Expect = 7e-11
Identities = 10/100 (10%), Positives = 29/100 (29%), Gaps = 2/100 (2%)
Query: 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL 377
+ + ++++ AI T+A +L+ + A L+
Sbjct: 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKID 479
Query: 378 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
+A + L + + + T ++ +
Sbjct: 480 EAIELFEDSAILARTMDEKL--QATTFAEAAKIQKRLRAD 517
Score = 45.1 bits (107), Expect = 3e-05
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 374 GSFLQAEADCTKAINLDKKNVK----AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429
GS + E D + L + RG + EAI+ + YA+ L+P
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 430 A 430
Sbjct: 61 F 61
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 109 bits (275), Expect = 3e-26
Identities = 36/69 (52%), Positives = 47/69 (68%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
P GSSSG+AVAVAA+L ++G +T G + P+A G++G +P+ G VS GIIPIS S
Sbjct: 162 PCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQ 221
Query: 62 DTVGWFARD 70
DT G AR
Sbjct: 222 DTAGPMARS 230
Score = 41.8 bits (99), Expect = 3e-04
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 12/83 (14%)
Query: 225 LVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIA 284
LV PTT P + S A+V+G +TVP+G D P + F+
Sbjct: 413 LVAPTTGVAWPIRSEG-------DDFPGESYSAAAVAGYPSLTVPMGQIDGLPVGLLFMG 465
Query: 285 RHGGDRFLLDTVQNMYASLQEQA 307
+ L++ A EQ
Sbjct: 466 TAWSEPKLIE-----MAYAYEQR 483
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 105 bits (265), Expect = 4e-25
Identities = 35/70 (50%), Positives = 45/70 (64%)
Query: 1 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS 60
GGSS G+AVAVA + SLG DT G +R+P+ F G++GF+PSYG VS G +P+S S
Sbjct: 143 QAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRS 202
Query: 61 LDTVGWFARD 70
D G R
Sbjct: 203 TDHAGPLTRS 212
Score = 34.8 bits (81), Expect = 0.053
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 224 ILVTPTTAYPPPKLGGKEM------LSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCP 277
L+ P P P LG +E+ +L S+ G + +P + P
Sbjct: 350 ALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLP--FSLLGVPTLALPFAKVEGMP 407
Query: 278 TSVSFIARHGGDRFLL 293
+ + +G D +L
Sbjct: 408 VGLQVVGAYGEDGKVL 423
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 105 bits (263), Expect = 2e-24
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
GGSS G+A VA VDF++G D G +R+P+AFCG++G +P++G V + G PI ++
Sbjct: 168 AGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTI 227
Query: 62 DTVGWFARD 70
D +G R
Sbjct: 228 DHLGPITRT 236
Score = 36.5 bits (85), Expect = 0.018
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 224 ILVTPTTAYPPPKLGGK-----EMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPT 278
+LV PT Y +L K +++ A + V+G ++VP G + P
Sbjct: 419 VLVMPTLPYVASELPAKDVDRATFITKALGMIANTA--PFDVTGHPSLSVPAGLVNGLPV 476
Query: 279 SVSFIARHGGDRFLL 293
+ RH D +L
Sbjct: 477 GMMITGRHFDDATVL 491
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 101 bits (253), Expect = 3e-24
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 17/135 (12%)
Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY-----------------YS 364
+ +A+ K GN +K+++ +A+ Y AI G++ + +
Sbjct: 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL 234
Query: 365 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424
N AA ++ + +A C + ++KN KA RRG A+ LG A +DF A
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294
Query: 425 PTNKRASLSADRLRK 439
P +K L +
Sbjct: 295 PDDKAIRRELRALAE 309
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 97.3 bits (243), Expect = 4e-22
Identities = 59/337 (17%), Positives = 105/337 (31%), Gaps = 64/337 (18%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
GGSS G+ AVAA L + G D G VR+P++ CG++G +P+ G +S ++ S ++
Sbjct: 147 VGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNV 206
Query: 62 D----------TV-----------GWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIA-- 98
+V G D Q +P + +
Sbjct: 207 AGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTASRPYAQ---GISENPGSLRVGVL 263
Query: 99 -DDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG---EYFDSKVPSLKGFHKTNGE 154
+ D + LG + + F K
Sbjct: 264 THNPVG--DFALDPECAAAARGAAAAL-------AALGHDVNDAYPEALGDRSFLKD--- 311
Query: 155 LKNVMRLIQRYEFKNNHNEWIESVKPALDPD-ISAEIGEMLE----ISETVIENCKSIRN 209
I E + L D + EM++ ++ C
Sbjct: 312 ----YSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELR 367
Query: 210 EMRSAISSLLKDDG-ILVTPTTAYPPPKLG--------GKEMLSEDYQNRAFSLL---SI 257
+ + +L+ PT P++G E + + + +L
Sbjct: 368 YYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVP 427
Query: 258 ASVSGCCQVTVPLGY-YDKCPTSVSFIARHGGDRFLL 293
+VSG +++P+G D P V +A +G + LL
Sbjct: 428 FNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLL 464
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 95.3 bits (238), Expect = 2e-21
Identities = 38/69 (55%), Positives = 49/69 (71%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
PGGSS G+A A+AADL +LG DT G VR P+AFCG+ G +P+YG VS G+I ++SL
Sbjct: 138 PGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSL 197
Query: 62 DTVGWFARD 70
D +G AR
Sbjct: 198 DQIGPMARS 206
Score = 30.2 bits (69), Expect = 1.6
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 224 ILVTPTTAYPPPKLGGK----EMLSEDYQNRAFSLLSI-ASVSGCCQVTVPLGYYDKCPT 278
+L+ PTT +P G + M ED L ++ A+++G ++ P G+ P
Sbjct: 381 LLLLPTTPHPAFPFGARRDPLAMYRED-------LYTVGANLTGLPALSFPAGFEGHLPV 433
Query: 279 SVSFIARHGGDRFLL 293
+ +A G D LL
Sbjct: 434 GLQLLAPWGEDERLL 448
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 94.9 bits (237), Expect = 3e-21
Identities = 32/69 (46%), Positives = 49/69 (71%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
PGGSS G+A AV+A +V +LG DT G VR P++ CG++G++P+YG VS G++ ++SL
Sbjct: 139 PGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSL 198
Query: 62 DTVGWFARD 70
D +G +
Sbjct: 199 DQIGPITKT 207
Score = 27.5 bits (62), Expect = 8.9
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
Query: 224 ILVTPTTAYPPPKLGGK----EMLSEDYQNRAFSLLSI-ASVSGCCQVTVPLGYYDKCPT 278
++TPT+ K+G D + +I A+++G ++VP G+ + P
Sbjct: 384 AILTPTSPVTAFKIGEIKDPLTYYLMD-------IFTIPANLAGLPAISVPFGFSNNLPV 436
Query: 279 SVSFIARHGGDRFLLDT 295
V I R D +
Sbjct: 437 GVQVIGRRFADGKVFRI 453
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 94.9 bits (237), Expect = 3e-21
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
PGGSS G+A AVAA LV SLG DT G +R P+A+CG++G +P+YG VS G++ ++SL
Sbjct: 151 PGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSL 210
Query: 62 DTVGWFARD 70
D +G R+
Sbjct: 211 DQIGPLTRN 219
Score = 28.7 bits (65), Expect = 4.8
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 224 ILVTPTTAYPPPKLGGK-----EMLSEDYQNRAFSLLSI-ASVSGCCQVTVPLGYYDKCP 277
++V PT LG + M + D LL+ +++G ++VP G + P
Sbjct: 398 VVVGPTAPTTAFNLGEEIDDPLTMYAND-------LLTTPVNLAGLPGISVPCGQSNGRP 450
Query: 278 TSVSFIARHGGDRFLL 293
+ FI + ++ L
Sbjct: 451 IGLQFIGKPFDEKTLY 466
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 94.9 bits (237), Expect = 3e-21
Identities = 33/69 (47%), Positives = 47/69 (68%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSL 61
PGGSS G+A +VA SLG DT G +R P++FCG++G +P+YG VS G++ ++SL
Sbjct: 144 PGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSL 203
Query: 62 DTVGWFARD 70
D +G F R
Sbjct: 204 DQIGVFGRR 212
Score = 29.0 bits (66), Expect = 3.6
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
Query: 224 ILVTPTTAYPPPKLGGK-----EMLSEDYQNRAFSLLSI-ASVSGCCQVTVPLGYYDKCP 277
++ +PTT P K G + EM D +L++ A+++G +++P+ + D P
Sbjct: 391 VIASPTTPTLPFKFGERLENPIEMYLSD-------ILTVPANLAGLPAISIPIAWKDGLP 443
Query: 278 TSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLS 316
I +H + LL + +++ K L+
Sbjct: 444 VGGQLIGKHWDETTLL----QISYLWEQKFKHYEKIPLT 478
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 92.0 bits (229), Expect = 3e-21
Identities = 22/99 (22%), Positives = 31/99 (31%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
G K Q AI Y A+ + Y + + G+F A K I
Sbjct: 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ K + G A Y +A F L L+P
Sbjct: 140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178
Score = 89.3 bits (222), Expect = 3e-20
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 3/109 (2%)
Query: 325 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC- 383
+ ++ + +K+ + +AI + + N+ Y+ RA Y E + A+ D
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 384 --TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+N K + G G AI+ + A+ + T
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM 110
Score = 82.3 bits (204), Expect = 6e-18
Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 3/108 (2%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
++ + G+ Y + AI + + I+ + + AY + +++A++ K
Sbjct: 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167
Query: 386 AINLDKKNVKAYLRRGTAREMLG---YYKEAIEDFSYALVLEPTNKRA 430
+ L YL R A A + + +
Sbjct: 168 VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215
Score = 80.4 bits (199), Expect = 3e-17
Identities = 15/112 (13%), Positives = 35/112 (31%), Gaps = 3/112 (2%)
Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISF---YTEAIKLNGNNATYYSNRAAAYLESGSFLQ 378
+ S I + Y+ ++ A Y + + + ++ G
Sbjct: 33 KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL 92
Query: 379 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
A A++ D + Y + G+ G + AI+ + T+ +
Sbjct: 93 AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144
Score = 77.3 bits (191), Expect = 4e-16
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 11/110 (10%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS---FLQAEADCTKAIN 388
G Y +K+++KA S + + ++L N Y RA A A+ K I
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207
Query: 389 LDKKN--------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ ++A + +A + L L+PTNK+A
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA 257
Score = 53.0 bits (128), Expect = 4e-08
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 338 KDKQWLKAISFYTEAIKLNGNNATY--------YSNRAAAYLESGSFLQAEADCTKAINL 389
D + A +Y + I++ A Y + ++A+A + L
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250
Query: 390 DKKNVKAYLRRGTAREMLGYY 410
D N KA E ++
Sbjct: 251 DPTNKKAIDGLKMKLEHHHHH 271
Score = 35.7 bits (83), Expect = 0.018
Identities = 4/43 (9%), Positives = 11/43 (25%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG 374
++ +KA + + + L+ N
Sbjct: 227 IAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 87.5 bits (217), Expect = 7e-21
Identities = 22/139 (15%), Positives = 36/139 (25%), Gaps = 12/139 (8%)
Query: 301 ASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA 360
+L + + + E G Y+ +W A + L+ +A
Sbjct: 5 GTLAMLRGL------------SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA 52
Query: 361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA 420
Y+ A G + QA + +D + LG A F A
Sbjct: 53 RYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSA 112
Query: 421 LVLEPTNKRASLSADRLRK 439
L A R
Sbjct: 113 RALAAAQPAHEALAARAGA 131
Score = 52.8 bits (127), Expect = 9e-09
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 337 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--- 393
+ +A+ Y+ ++ N + + A +L+ G AE+ A L
Sbjct: 63 QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122
Query: 394 VKAYLRRGTAREMLGYYKE 412
R G E + K+
Sbjct: 123 EALAARAGAMLEAVTARKD 141
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 89.4 bits (221), Expect = 2e-19
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 15/137 (10%)
Query: 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY--------------- 362
+T + + A I KEKG +K ++++A+ Y + +
Sbjct: 260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319
Query: 363 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 422
+ N A YL+ + +A C KA+ LD N K RRG A+ ++ ++ A DF L
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379
Query: 423 LEPTNKRASLSADRLRK 439
+ P NK A L +K
Sbjct: 380 VNPQNKAARLQISMCQK 396
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 85.2 bits (211), Expect = 2e-19
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 1/111 (0%)
Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 380
N + S+++A E K++ + KA FY E ++ NN A + G A
Sbjct: 49 NSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108
Query: 381 ADCTKAINLDKKNVKAYLRRGTA-REMLGYYKEAIEDFSYALVLEPTNKRA 430
K + L+ N+ A + G K+ +E L + A
Sbjct: 109 RMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159
Score = 84.8 bits (210), Expect = 3e-19
Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 16/123 (13%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----------------TYYSNRA 367
QS + +K + A + Q +A+S++ + I LN + + A
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61
Query: 368 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
AY ++ ++ +A + + NV + G K+A+ + L LE N
Sbjct: 62 LAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121
Query: 428 KRA 430
A
Sbjct: 122 LAA 124
Score = 75.9 bits (187), Expect = 4e-16
Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 1/97 (1%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLD 390
Q A+ Y + ++L +N Y + + K ++
Sbjct: 94 CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
K A R G ++ Y++A ++ P+
Sbjct: 154 TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 88.4 bits (220), Expect = 2e-19
Identities = 23/107 (21%), Positives = 40/107 (37%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+ + + ++ ++ ++ F T AIK N A YSN Y E G +A
Sbjct: 31 DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
A+ L + Y+ A G + A++ + AL P
Sbjct: 91 RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137
Score = 84.9 bits (211), Expect = 3e-18
Identities = 24/99 (24%), Positives = 38/99 (38%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
GN + Q +AI Y A++L + Y N AAA + +G A A+ +
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
G + LG +EA + A+ +P A
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Score = 83.7 bits (208), Expect = 8e-18
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 332 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
GN K+ + + +A++ Y A+ L+ N+A + N A Y E G A +AI L
Sbjct: 209 LGN-VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
AY A + G EA + ++ AL L PT+ +
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307
Score = 83.4 bits (207), Expect = 1e-17
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 332 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
N A K+K +A Y A++L +A +N A E G+ +A KA+ +
Sbjct: 277 LAN-ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ A+ + + G +EA+ + A+ + PT A
Sbjct: 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375
Score = 83.0 bits (206), Expect = 2e-17
Identities = 19/100 (19%), Positives = 39/100 (39%)
Query: 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
E ++ Y+ + A + + +N ++ + + ++ T AI +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+AY G + G +EAIE + +AL L+P
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103
Score = 81.8 bits (203), Expect = 3e-17
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 2/100 (2%)
Query: 332 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
Y ++ AI Y AI+L + Y N A A E GS +AE A+ L
Sbjct: 243 LAC-VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ + + G +EA+ + AL + P A
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341
Score = 80.3 bits (199), Expect = 1e-16
Identities = 20/94 (21%), Positives = 30/94 (31%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
A+ Y A++ N + S+ G +A+A KAI
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
A+ G G AI F A+ L+P
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Score = 79.5 bits (197), Expect = 2e-16
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 332 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
GN K L +A + Y +AI+ N A +SN + G A KA+ LD
Sbjct: 141 LGN-LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
+ AY+ G + + A+ + AL L P +
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236
Score = 78.7 bits (195), Expect = 4e-16
Identities = 20/96 (20%), Positives = 36/96 (37%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
G + AI + +A+ L+ N Y N E+ F +A A +A++L
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
+ + G AI+ + A+ L+P
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270
Score = 62.6 bits (153), Expect = 7e-11
Identities = 15/77 (19%), Positives = 30/77 (38%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
N + +A+ Y +A+++ A +SN A+ + G +A +AI +
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
Query: 392 KNVKAYLRRGTAREMLG 408
AY G + +
Sbjct: 371 TFADAYSNMGNTLKEMQ 387
Score = 61.4 bits (150), Expect = 2e-10
Identities = 11/68 (16%), Positives = 19/68 (27%)
Query: 363 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 422
A ++G F AE C + + N L + + + A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 423 LEPTNKRA 430
P A
Sbjct: 62 QNPLLAEA 69
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 84.8 bits (210), Expect = 3e-19
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
+G A K W A+ ++ + ++ N Y + +AE T++IN DK
Sbjct: 12 EGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
AY +RG Y AI+D AL+ N
Sbjct: 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104
Score = 79.0 bits (195), Expect = 4e-17
Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 16/125 (12%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+ I G K +A +T +I + + A Y R Y ++ + A D
Sbjct: 35 PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDL 94
Query: 384 TKAINLDKKNV----------------KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
+A+ + N + +K+A E + A ++
Sbjct: 95 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154
Query: 428 KRASL 432
+ + +
Sbjct: 155 RHSKI 159
Score = 51.6 bits (124), Expect = 8e-08
Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 3/76 (3%)
Query: 355 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 414
++ A N + + A + + + + G +L EA
Sbjct: 1 MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAE 57
Query: 415 EDFSYALVLEPTNKRA 430
+ F+ ++ + A
Sbjct: 58 KAFTRSINRDKHLAVA 73
Score = 46.6 bits (111), Expect = 4e-06
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 28/110 (25%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIK-LNGNNATYYS---------------NRAAAYLESGS 375
+G Y+ +++ AI EA+ L GN Y N A Y +
Sbjct: 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136
Query: 376 FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
+ +AE A ++ + + + +A+E + EP
Sbjct: 137 WKKAEEQLALATSMKSEPRHSKID------------KAMECVWKQKLYEP 174
Score = 35.8 bits (83), Expect = 0.015
Identities = 7/57 (12%), Positives = 17/57 (29%)
Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ 378
+ + E+ K ++W KA A + ++A + +
Sbjct: 117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYE 173
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 85.4 bits (212), Expect = 6e-19
Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 1/131 (0%)
Query: 298 NMYASLQEQADIATKSK-LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 356
+ +LQ++ +A + L++ + A++ E+G A + +++A+ +
Sbjct: 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR 73
Query: 357 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIED 416
+ ++ ++G+F A + LD A+L RG A G K A +D
Sbjct: 74 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD 133
Query: 417 FSYALVLEPTN 427
+P +
Sbjct: 134 LLAFYQDDPND 144
Score = 73.5 bits (181), Expect = 7e-15
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 4/111 (3%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK----LNGNNATYYSNRAAAYLESGSFLQA 379
S ++ Q ++ + + + A R Y G A
Sbjct: 3 TSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALA 62
Query: 380 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
D ++A+ + + + G G + A E F L L+PT A
Sbjct: 63 RNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 113
Score = 70.8 bits (174), Expect = 7e-14
Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 1/114 (0%)
Query: 304 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 363
++QA K + Q + GN + + + T+ L + +
Sbjct: 160 EKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLAEHLSETN 218
Query: 364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
YL G A A A+ + N + +LG ++ + +
Sbjct: 219 FYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAES 272
Score = 70.4 bits (173), Expect = 7e-14
Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 1/99 (1%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
G + + A + ++L+ + NR A G A+ D D
Sbjct: 83 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ L A + L K+A E +
Sbjct: 143 NDPFRSLWLYLAEQKLD-EKQAKEVLKQHFEKSDKEQWG 180
Score = 62.7 bits (153), Expect = 3e-11
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 3/95 (3%)
Query: 336 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRA---AAYLESGSFLQAEADCTKAINLDKK 392
A + +A + + + ++ E + +AD T +L +
Sbjct: 154 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 213
Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
+ G LG A F A+ N
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248
Score = 43.1 bits (102), Expect = 8e-05
Identities = 7/54 (12%), Positives = 14/54 (25%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
G A + + A+ N +N + G A+ +
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 84.1 bits (209), Expect = 9e-19
Identities = 27/98 (27%), Positives = 38/98 (38%)
Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
+ + + KA +T+AI+ N +A Y N A +A A KA+ LD
Sbjct: 30 MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89
Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
AY G + YKEA + F AL N
Sbjct: 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127
Score = 83.3 bits (207), Expect = 2e-18
Identities = 22/99 (22%), Positives = 41/99 (41%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
N + +A++FY +A++L+ + AT Y Y+ + +A+ KA+
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+N + GT L K A+ A+ L + A
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161
Score = 81.0 bits (201), Expect = 1e-17
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 2/100 (2%)
Query: 332 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
GN Y K+ +A + +A++ N + ++ A +A+ L+
Sbjct: 97 AGN-VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ + +A + G G EA+ F+ +P + A
Sbjct: 156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195
Score = 80.6 bits (200), Expect = 2e-17
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 2/100 (2%)
Query: 332 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
G +Q A+ + A++LN N+ G +A + D
Sbjct: 131 LGT-VLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ A+ G ++A+E A+ ++P + A
Sbjct: 190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229
Score = 68.3 bits (168), Expect = 2e-13
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL----QAEADCTKAINLDKKNVKAYLR 399
+ + + L + S + GS +A TKAI +K++ Y+
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 400 RGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ + A+ + AL L+ + A
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSAATA 93
Score = 62.5 bits (153), Expect = 2e-11
Identities = 11/79 (13%), Positives = 28/79 (35%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
G + +A+S + + + +A + N Y + +A KAI++
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224
Query: 392 KNVKAYLRRGTAREMLGYY 410
++ A + ++
Sbjct: 225 DHMLALHAKKLLGHHHHHH 243
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 85.9 bits (213), Expect = 2e-18
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 16/130 (12%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAI----------------KLNGNNATYYSNRAAA 369
+E K GN +K + W AI YT+ + KL + N A
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282
Query: 370 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 429
L+ + A C +A+ +D N KA RR + L Y +A+ D A + P +K
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342
Query: 430 ASLSADRLRK 439
++++
Sbjct: 343 IQAELLKVKQ 352
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 79.0 bits (196), Expect = 3e-18
Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 2/106 (1%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
Q+ E +G Y + ++I + +AI+L+ + Y+ + A + +A
Sbjct: 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63
Query: 384 TKAINL--DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
IN+ D+ N + + A + + E LE +
Sbjct: 64 NYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 63.2 bits (155), Expect = 1e-12
Identities = 17/71 (23%), Positives = 34/71 (47%)
Query: 355 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 414
+ N Y ++G++ ++ KAI LD + K +L +G A L Y+EA+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 415 EDFSYALVLEP 425
+ ++Y + +
Sbjct: 61 DCYNYVINVIE 71
Score = 40.9 bits (97), Expect = 9e-05
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 389 LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ +N + Y G + G Y E+I+ F A+ L+P +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY 42
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 85.6 bits (212), Expect = 4e-18
Identities = 56/308 (18%), Positives = 90/308 (29%), Gaps = 41/308 (13%)
Query: 2 PGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP----I 57
PGGSS G + + LG D G +R PSAFCGI G +P+ +S G+
Sbjct: 208 PGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQ 267
Query: 58 STSLDTVGWFARDPKILRHVGHVLLQ------------LPF--AAQRSPRQIIIA---DD 100
+ ++G ARD + L LL LPF RS R + + D
Sbjct: 268 TAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETD 327
Query: 101 CFELLKIPADRVVQVVIKSTEKLFGRQV-----LKHENLGEYFDSKVPSLKGFHKTNGEL 155
+ + R + + E G + E + G
Sbjct: 328 NYTMPSPAMRRALIETKQRLEAA-GHTLIPFLPNNIPYALEVLSTGGLFSDGGRSFLQNF 386
Query: 156 KN--VMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISE--TVIENCKSI--RN 209
K V + W + + L + + L + + K
Sbjct: 387 KGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIE 446
Query: 210 EMRSAISSLLKDDGI--LVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVT 267
R ++ + K + L+TP A S + +
Sbjct: 447 MYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRAT------GAVSYTMLYNCLDFPAGV 500
Query: 268 VPLGYYDK 275
VP+
Sbjct: 501 VPVTTVTA 508
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 85.2 bits (211), Expect = 5e-18
Identities = 13/107 (12%), Positives = 27/107 (25%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
Q G + + + +A L ++ + +
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 265
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A L + V A ++ L + + A L P A
Sbjct: 266 CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVA 312
Score = 83.3 bits (206), Expect = 2e-17
Identities = 14/107 (13%), Positives = 29/107 (27%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
Q G + + + +A L ++ + + +
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVL 299
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A L + V A G ++ L + + A L P A
Sbjct: 300 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 346
Score = 82.5 bits (204), Expect = 4e-17
Identities = 13/110 (11%), Positives = 28/110 (25%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+ G + + + +A L ++ + +
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVL 435
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 433
+A L + V A G R L + AL + +L+
Sbjct: 436 CQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALA 485
Score = 82.1 bits (203), Expect = 5e-17
Identities = 11/99 (11%), Positives = 25/99 (25%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
+ + + +A L ++ + + +A L
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ V A ++ L + + A L P A
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 448
Score = 81.7 bits (202), Expect = 7e-17
Identities = 11/99 (11%), Positives = 25/99 (25%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
+ + + +A L ++ + + +A L
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ V A ++ L + + A L P A
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVA 380
Score = 81.7 bits (202), Expect = 7e-17
Identities = 14/107 (13%), Positives = 28/107 (26%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
Q G + + + +A L ++ + +
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 367
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A L + V A G ++ L + + A L P A
Sbjct: 368 CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVA 414
Score = 81.3 bits (201), Expect = 8e-17
Identities = 13/107 (12%), Positives = 26/107 (24%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
Q + + + +A L ++ +
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A L + V A G ++ L + + A L P A
Sbjct: 164 CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 210
Score = 81.3 bits (201), Expect = 1e-16
Identities = 12/107 (11%), Positives = 26/107 (24%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+ + + +A L ++ + +
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 197
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A L + V A G ++ L + + A L P A
Sbjct: 198 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 244
Score = 80.9 bits (200), Expect = 1e-16
Identities = 13/107 (12%), Positives = 28/107 (26%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+ G + + + +A L ++ + +
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 231
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A L + V A G ++ L + + A L P A
Sbjct: 232 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 278
Score = 80.9 bits (200), Expect = 1e-16
Identities = 11/107 (10%), Positives = 26/107 (24%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+ + + + +A L ++ + +
Sbjct: 70 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A L + V A ++ L + + A L P A
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVA 176
Score = 73.6 bits (181), Expect = 3e-14
Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 3/129 (2%)
Query: 303 LQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYK-DKQWLKAISFYTEAIKLNGNNAT 361
L+ +A + + + Q +IAK G A + W A+ + L
Sbjct: 16 LEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL--TGAPLNLTPEQVV 73
Query: 362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 421
++ + + +A L + V A ++ L + + A
Sbjct: 74 AIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH 133
Query: 422 VLEPTNKRA 430
L P A
Sbjct: 134 GLTPEQVVA 142
Score = 62.1 bits (151), Expect = 1e-10
Identities = 13/107 (12%), Positives = 26/107 (24%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+ + + A ++L+ + R A
Sbjct: 2 EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALT 61
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+NL + V A ++ L + + A L P A
Sbjct: 62 GAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 108
Score = 52.1 bits (125), Expect = 2e-07
Identities = 8/86 (9%), Positives = 21/86 (24%), Gaps = 7/86 (8%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
+ + + +A L ++ S + + A+
Sbjct: 418 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALT 477
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDF 417
+ A LG + A++
Sbjct: 478 ND------HLVALACLG-GRPALDAV 496
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 78.2 bits (194), Expect = 1e-17
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 332 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
GN AY + +AI +Y +A++L+ +A + N AY + G + +A KA+ LD
Sbjct: 41 LGN-AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
++ +A+ G A G Y EAIE + AL L+P +
Sbjct: 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 73.6 bits (182), Expect = 5e-16
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 332 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
GN AY + + +AI +Y +A++L+ +A + N AY + G + +A KA+ LD
Sbjct: 7 LGN-AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
++ +A+ G A G Y EAIE + AL L+P
Sbjct: 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Score = 55.5 bits (135), Expect = 1e-09
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSY 419
A + N AY + G + +A KA+ LD ++ +A+ G A G Y EAIE +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 420 ALVLEP 425
AL L+P
Sbjct: 61 ALELDP 66
Score = 30.0 bits (69), Expect = 0.59
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 396 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
A+ G A G Y EAIE + AL L+P + A
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 37
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 83.5 bits (206), Expect = 1e-17
Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 6/162 (3%)
Query: 268 VPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAE 327
VP G + T + R + +++ LQ D + +++ + S E
Sbjct: 15 VPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFR---DSYFETHSVE 71
Query: 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ-AEADCTKA 386
A K ++ K + E + A + A + + AE +KA
Sbjct: 72 DAGRKQQDV--QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKA 129
Query: 387 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
+ L+ + V+A+ + G G A FS AL
Sbjct: 130 VKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV 171
Score = 63.1 bits (153), Expect = 5e-11
Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 11/111 (9%)
Query: 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL--------QAEAD 382
+ + + + ++ A++++ + + AYL QA +
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243
Query: 383 CTKAINLDKK---NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A +D+K N +L R T + Y EA+E FS A L+P
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294
Score = 61.9 bits (150), Expect = 1e-10
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 3/107 (2%)
Query: 334 NQAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
N K +A+S Y +A K++ +N + NRA + S+ +A ++A LD
Sbjct: 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437
+ R E L +E + + SL L
Sbjct: 289 PAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHL 335
Score = 58.9 bits (142), Expect = 1e-09
Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 11/119 (9%)
Query: 322 QKQSAEIAKEKGNQAYKD--KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA 379
+ A+ KG A +A ++A+KL ++ Y + G A
Sbjct: 98 AQVEAQALMLKGK-ALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSA 156
Query: 380 EADCTKAINLDKK--------NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ A+ K V L+ + E + +++ A+ ++ + R+
Sbjct: 157 HTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215
Score = 55.0 bits (132), Expect = 2e-08
Identities = 13/119 (10%), Positives = 38/119 (31%), Gaps = 18/119 (15%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---------SF 376
E + G +K A + ++ A+ N + N + +
Sbjct: 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ-NLSMVLRQLQTDSGDEHSRHV 195
Query: 377 LQAEADCTKAINLDKKNVKAYLRRGTA--------REMLGYYKEAIEDFSYALVLEPTN 427
+ + A+ +D + +++ G A + ++A+ ++ A ++
Sbjct: 196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254
Score = 34.2 bits (78), Expect = 0.086
Identities = 9/97 (9%), Positives = 26/97 (26%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
+ ++ + +A+ +++A L+ K
Sbjct: 264 RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKL 323
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 428
+++ LR ++ L L+P +
Sbjct: 324 QSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLST 360
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 82.0 bits (203), Expect = 2e-17
Identities = 15/110 (13%), Positives = 31/110 (28%)
Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 380
N E E+G K +A + + + + E+ A
Sbjct: 16 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAI 75
Query: 381 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
A LD K++ + + A+ L+ +P ++
Sbjct: 76 IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125
Score = 76.2 bits (188), Expect = 2e-15
Identities = 12/99 (12%), Positives = 33/99 (33%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
G + A + A++L ++A ++ A +A +A++++
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
V+ + + Y A + A+ ++
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276
Score = 75.4 bits (186), Expect = 3e-15
Identities = 17/99 (17%), Positives = 44/99 (44%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
+ ++ + + A+++N N+A +++ Y S ++ A A+ +A+ L
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ + + + G +EA++ ++ AL + P R
Sbjct: 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242
Score = 65.4 bits (160), Expect = 7e-12
Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 15/109 (13%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
G ++++ AI A L+ + ++ A ++ + A A +
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120
Query: 392 KNVKAY---------------LRRGTAREMLGYYKEAIEDFSYALVLEP 425
+ + Y+E AL + P
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169
Score = 63.1 bits (154), Expect = 4e-11
Identities = 11/90 (12%), Positives = 26/90 (28%)
Query: 341 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400
L+ + Y + L+ + +A + +A+
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
G + AI ++A +L+P +
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKDIAV 91
Score = 59.2 bits (144), Expect = 7e-10
Identities = 9/114 (7%), Positives = 28/114 (24%), Gaps = 15/114 (13%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS---------------NRAAAYLESGSF 376
+ A++ + S + + +
Sbjct: 95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154
Query: 377 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ A+ ++ + + + G + Y A + A+ L P + +
Sbjct: 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208
Score = 53.1 bits (128), Expect = 6e-08
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 4/88 (4%)
Query: 332 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
G + + +A+ Y A+ +N N A +Y + A +AI +
Sbjct: 212 LGA-TLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270
Query: 391 KKNVKAYLRRG--TAREMLGYYKEAIED 416
R M +++ +
Sbjct: 271 VGGTTPTGEASREATRSMWDFFRMLLNV 298
Score = 40.7 bits (96), Expect = 5e-04
Identities = 12/57 (21%), Positives = 16/57 (28%)
Query: 374 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
G LQ D N + + G + L EA F P + A
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEA 57
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 76.0 bits (187), Expect = 1e-16
Identities = 21/116 (18%), Positives = 31/116 (26%)
Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
+ Y + +A F+ + N Y AA Y F QA
Sbjct: 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAAD 91
Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 437
A L K + G + L +A E F + K + L
Sbjct: 92 LYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYL 147
Score = 62.1 bits (151), Expect = 8e-12
Identities = 11/100 (11%), Positives = 32/100 (32%)
Query: 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
E + + + + + + + + + A + G +AE D
Sbjct: 7 ENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD 66
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
NV + ++ +++A + ++ A L +
Sbjct: 67 FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 76.3 bits (189), Expect = 2e-16
Identities = 14/94 (14%), Positives = 32/94 (34%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
KG K ++ +A+ + + + + AY+++G+ + +++
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
NVK G + Y A+ P
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Score = 76.0 bits (188), Expect = 2e-16
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 2/95 (2%)
Query: 332 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
G AY + ++ +N + Y++ + A K +
Sbjct: 48 LGI-AYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
N R G A + LG + EAI+ F AL L P
Sbjct: 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141
Score = 74.8 bits (185), Expect = 5e-16
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 2/100 (2%)
Query: 332 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
G Y +++ A+ + + N N A G F +A A+ L
Sbjct: 82 LGL-TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
K + + E +G ++EA+ F A L+
Sbjct: 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180
Score = 61.3 bits (150), Expect = 3e-11
Identities = 15/78 (19%), Positives = 29/78 (37%)
Query: 353 IKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE 412
+ + YY ++ ++ ++G + QA + + D +V L G A G
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 413 AIEDFSYALVLEPTNKRA 430
E +L P N +
Sbjct: 61 GTELLERSLADAPDNVKV 78
Score = 51.7 bits (125), Expect = 5e-08
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 332 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
G A + +AI + A+ L N + A +Y + G +A KA LD
Sbjct: 116 LGV-ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174
Query: 391 KKNVKAY 397
+
Sbjct: 175 EGASVEL 181
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 79.3 bits (196), Expect = 2e-16
Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 1/134 (0%)
Query: 298 NMYASLQEQADIATKSK-LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 356
+ Q Q ++ K +T N + A E+G + K+ I F AI +
Sbjct: 36 SENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD 95
Query: 357 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIED 416
+A + E+ + A + + L N+KA + + + ++A E
Sbjct: 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEA 155
Query: 417 FSYALVLEPTNKRA 430
+ P K
Sbjct: 156 LKNWIKQNPKYKYL 169
Score = 75.1 bits (185), Expect = 5e-15
Identities = 18/99 (18%), Positives = 43/99 (43%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
G + ++ +AI + A+ + + + ++ A +A T+A+ +
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+++ G + LG Y+EA+ +F AL L+ ++
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317
Score = 72.0 bits (177), Expect = 5e-14
Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 3/113 (2%)
Query: 321 NQKQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFL 377
K+ + + +++ D Y EA NG+ + + + SG F
Sbjct: 171 KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN 230
Query: 378 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A A+ + ++ + R G +EA+E ++ AL ++P R+
Sbjct: 231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283
Score = 69.3 bits (170), Expect = 4e-13
Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 4/130 (3%)
Query: 305 EQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----A 360
E+A A +S Q + E+A+ ++ Q +S + + N
Sbjct: 6 ERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDW 65
Query: 361 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA 420
L+ G AI D + +A+ G + + AI
Sbjct: 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRC 125
Query: 421 LVLEPTNKRA 430
L L+P N +A
Sbjct: 126 LELQPNNLKA 135
Score = 68.5 bits (168), Expect = 7e-13
Identities = 14/99 (14%), Positives = 29/99 (29%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
G +++ AI ++L NN A +Y + A I +
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
K + + + ++ D S ++ A
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA 203
Score = 53.9 bits (130), Expect = 4e-08
Identities = 16/108 (14%), Positives = 29/108 (26%), Gaps = 12/108 (11%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA----- 386
A IK N N+ + + ++ D +
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198
Query: 387 -------INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
N D + G + G + AI+ F+ AL + P +
Sbjct: 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246
Score = 52.4 bits (126), Expect = 1e-07
Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403
+A+ YT A+++ N + + G++ +A ++ A++L +K+ A
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324
Query: 404 --REMLGYYKEAI 414
+ + A+
Sbjct: 325 ISGNIWAALRIAL 337
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 78.9 bits (195), Expect = 3e-16
Identities = 15/127 (11%), Positives = 36/127 (28%)
Query: 304 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 363
+ N + E+G + ++ A+ + A++ + + +
Sbjct: 42 DDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAW 101
Query: 364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423
E+ L A + + + L N A + + ++A E L
Sbjct: 102 QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 161
Query: 424 EPTNKRA 430
P
Sbjct: 162 TPAYAHL 168
Score = 72.8 bits (179), Expect = 3e-14
Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 2/105 (1%)
Query: 328 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTK 385
+K D +L+ + A++L+ + + SG + +A T
Sbjct: 183 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242
Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
A+++ + + + G +EA+ + AL L+P R+
Sbjct: 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 287
Score = 72.4 bits (178), Expect = 4e-14
Identities = 20/99 (20%), Positives = 43/99 (43%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
G ++ KA+ +T A+ + N+ ++ A +A A +A+ L
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+++ G + LG ++EA+E F AL ++ ++
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321
Score = 64.7 bits (158), Expect = 1e-11
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 15/114 (13%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
G +++Q L AIS ++L +N T A ++ QA +
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163
Query: 392 KNVKAYLRR---------GTAREMLGY------YKEAIEDFSYALVLEPTNKRA 430
G ++ +LG + E E F A+ L+PT+
Sbjct: 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217
Score = 56.6 bits (137), Expect = 5e-09
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 11/89 (12%)
Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR--- 400
+A++ Y A++L N + + G+ +A +A+N+ +K+
Sbjct: 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328
Query: 401 --------GTAREMLGYYKEAIEDFSYAL 421
A MLG + L
Sbjct: 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 78.0 bits (192), Expect = 1e-15
Identities = 17/99 (17%), Positives = 33/99 (33%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
G + +A +++++ ++ + A ++ G QA + T A L +
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
YL G LG A E + L +
Sbjct: 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477
Score = 76.4 bits (188), Expect = 4e-15
Identities = 16/107 (14%), Positives = 43/107 (40%)
Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 380
++S+++ K + + +++ ++ T+ ++++ N Y A+ ESG +
Sbjct: 300 GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY 359
Query: 381 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
++ + +L G + EA FS + ++P
Sbjct: 360 LISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406
Score = 75.3 bits (185), Expect = 1e-14
Identities = 20/132 (15%), Positives = 38/132 (28%)
Query: 296 VQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 355
V N + E+ D+ K ST + + L+ Y +I
Sbjct: 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300
Query: 356 NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 415
++ +A F+ A TK + +D N+ Y + G +
Sbjct: 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYL 360
Query: 416 DFSYALVLEPTN 427
+ + P
Sbjct: 361 ISNDLVDRHPEK 372
Score = 73.7 bits (181), Expect = 3e-14
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 7/107 (6%)
Query: 331 EKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNRAAAYLESGSFLQAEADC 383
E G A+ AI+ + A+ L A ++N AY + + A
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ + L + + AI +L + P A
Sbjct: 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586
Score = 71.4 bits (175), Expect = 2e-13
Identities = 19/100 (19%), Positives = 34/100 (34%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
+ + + +AIS YT A +L Y +++ G+ L A + L +
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS 431
+ G + AI F AL+L +
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512
Score = 71.0 bits (174), Expect = 2e-13
Identities = 13/99 (13%), Positives = 33/99 (33%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
++ + K + + + A + YL +A +K+ +D
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ A++ + + G + +AI ++ A L
Sbjct: 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443
Score = 69.1 bits (169), Expect = 8e-13
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 7/103 (6%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-- 389
G Q + L A + + L + + A A+ L
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506
Query: 390 -----DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
+K + G A L Y AI+ + L+L +
Sbjct: 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549
Score = 62.2 bits (151), Expect = 2e-10
Identities = 14/72 (19%), Positives = 27/72 (37%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
G+ K K + AI + + L+ N+A ++ A YL A +++ +
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581
Query: 392 KNVKAYLRRGTA 403
+ A A
Sbjct: 582 NEIMASDLLKRA 593
Score = 54.5 bits (131), Expect = 4e-08
Identities = 14/134 (10%), Positives = 39/134 (29%), Gaps = 3/134 (2%)
Query: 297 QNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 356
+ + + D +KL K A + +G + +A Y EA+ ++
Sbjct: 171 NLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230
Query: 357 GNNATYYSNRAAAYLESGSFLQAEA---DCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 413
+ + +L + + + D +++ +
Sbjct: 231 AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290
Query: 414 IEDFSYALVLEPTN 427
ED+ ++ +
Sbjct: 291 AEDYLSSINGLEKS 304
Score = 54.1 bits (130), Expect = 5e-08
Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 1/100 (1%)
Query: 332 KGNQAYKDKQWLKAISF-YTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
+ D++W + Y+ K + L+ D +IN
Sbjct: 242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+K+ L + + + + + + L ++P N
Sbjct: 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDV 341
Score = 42.9 bits (101), Expect = 2e-04
Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 19/125 (15%)
Query: 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA--- 379
+ A + +A T+ N ++A Y A ++ + A
Sbjct: 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRY-LAAFCLVKLYDWQGALNL 172
Query: 380 --------------EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
+ + K RG L + A E + AL+++
Sbjct: 173 LGETNPFRKDEKNANKLLMQDGGI-KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231
Query: 426 TNKRA 430
A
Sbjct: 232 KCYEA 236
Score = 34.0 bits (78), Expect = 0.097
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES 373
K AI+ E++ ++ N A E+
Sbjct: 556 IALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEEN 597
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 71.7 bits (177), Expect = 2e-15
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 332 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
GN AY + +AI +Y +A++L+ NNA + N AY + G + +A KA+ LD
Sbjct: 15 LGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
N +A+ G A G Y EAIE + AL L+P
Sbjct: 74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Score = 61.6 bits (151), Expect = 5e-12
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 332 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
GN AY + +AI +Y +A++L+ NNA + N AY + G + +A KA+ LD
Sbjct: 49 LGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107
Query: 391 KKNVKAYLRRGTAREMLG 408
N +A G A++ G
Sbjct: 108 PNNAEAKQNLGNAKQKQG 125
Score = 57.0 bits (139), Expect = 3e-10
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
N+A + N AY + G + +A KA+ LD N +A+ G A G Y EAIE +
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 418 SYALVLEP 425
AL L+P
Sbjct: 67 QKALELDP 74
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 70.8 bits (174), Expect = 3e-15
Identities = 12/83 (14%), Positives = 21/83 (25%)
Query: 345 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 404
+ +N Y E F A A++ D A+ G
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 405 EMLGYYKEAIEDFSYALVLEPTN 427
+ G A + + L +
Sbjct: 64 QGQGDRAGARQAWESGLAAAQSR 86
Score = 41.9 bits (99), Expect = 4e-05
Identities = 7/74 (9%), Positives = 19/74 (25%), Gaps = 4/74 (5%)
Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
G + +Q+ A+ A+ + + + G A + +
Sbjct: 26 GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85
Query: 393 NVKAYLRRGTAREM 406
+E+
Sbjct: 86 RGDQ----QVVKEL 95
Score = 33.5 bits (77), Expect = 0.032
Identities = 8/47 (17%), Positives = 13/47 (27%)
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ N+ G + A+ AL +PT A
Sbjct: 9 EAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA 55
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 76.2 bits (187), Expect = 6e-15
Identities = 14/129 (10%), Positives = 31/129 (24%), Gaps = 1/129 (0%)
Query: 302 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 361
+++ + Q IA + + + +A L
Sbjct: 169 AMEAVHASRNALTGAPLNLTPAQVVAIA-SNNGGKQALETVQRLLPVLCQAHGLTPAQVV 227
Query: 362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 421
++ + + +A L V A ++ L + + A
Sbjct: 228 AIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAH 287
Query: 422 VLEPTNKRA 430
L P A
Sbjct: 288 GLTPDQVVA 296
Score = 75.1 bits (184), Expect = 1e-14
Identities = 13/107 (12%), Positives = 27/107 (25%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
G + + + +A L + ++ + +
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A L V A G ++ L + + A L P A
Sbjct: 352 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 398
Score = 74.7 bits (183), Expect = 2e-14
Identities = 11/100 (11%), Positives = 25/100 (25%)
Query: 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
+ + + +A L + ++ + + +A L
Sbjct: 265 SNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT 324
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
V A ++ L + + A L P A
Sbjct: 325 PDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 364
Score = 73.9 bits (181), Expect = 4e-14
Identities = 12/107 (11%), Positives = 26/107 (24%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+ + + +A L + ++ + +
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A L V A G ++ L + + A L P A
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVA 330
Score = 70.4 bits (172), Expect = 4e-13
Identities = 12/107 (11%), Positives = 27/107 (25%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
G + + + +A L + ++ + +
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A L + V A ++ L + + A L P A
Sbjct: 589 CQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVA 635
Score = 70.4 bits (172), Expect = 4e-13
Identities = 16/127 (12%), Positives = 30/127 (23%), Gaps = 1/127 (0%)
Query: 304 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 363
E + Q Q IA + + + +A L
Sbjct: 578 LETVQRLLPVLCQAHGLTQVQVVAIA-SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAI 636
Query: 364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423
++ + + +A L V A G ++ L + + A L
Sbjct: 637 ASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 696
Query: 424 EPTNKRA 430
A
Sbjct: 697 TQEQVVA 703
Score = 70.1 bits (171), Expect = 5e-13
Identities = 12/99 (12%), Positives = 26/99 (26%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
+ + + +A L + ++ + + +A L
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP 528
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
V A G ++ L + + A L P A
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 567
Score = 69.7 bits (170), Expect = 8e-13
Identities = 12/107 (11%), Positives = 25/107 (23%), Gaps = 1/107 (0%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+ + + +A L + ++ + +
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A L V A G + L + + A L P A
Sbjct: 386 CQAHGLTPDQVVAIASNGGKQA-LETVQRLLPVLCQAHGLTPDQVVA 431
Score = 69.3 bits (169), Expect = 1e-12
Identities = 11/109 (10%), Positives = 24/109 (22%)
Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 381
+ + +A L + ++ + +
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552
Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A L V A G ++ L + + A L A
Sbjct: 553 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVA 601
Score = 68.9 bits (168), Expect = 1e-12
Identities = 15/127 (11%), Positives = 32/127 (25%), Gaps = 1/127 (0%)
Query: 304 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 363
E + Q IA + + + +A L +
Sbjct: 612 LETVQRLLPVLCQAHGLTPAQVVAIA-SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAI 670
Query: 364 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423
++ + + +A L ++ V A ++ L + + A L
Sbjct: 671 ASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGL 730
Query: 424 EPTNKRA 430
P A
Sbjct: 731 TPDQVVA 737
Score = 68.1 bits (166), Expect = 2e-12
Identities = 11/107 (10%), Positives = 23/107 (21%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+ + + + L ++ + Q
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A L V A ++ L + + A L P A
Sbjct: 487 CQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVA 533
Score = 67.7 bits (165), Expect = 3e-12
Identities = 11/107 (10%), Positives = 25/107 (23%), Gaps = 1/107 (0%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
G + + + +A L + ++ + +
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVL 418
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A L V A ++ L + + L P A
Sbjct: 419 CQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVA 465
Score = 67.4 bits (164), Expect = 4e-12
Identities = 11/97 (11%), Positives = 24/97 (24%)
Query: 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
G + + + +A L ++ + + +A L
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 629
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
V A ++ L + + A L P
Sbjct: 630 PAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666
Score = 67.4 bits (164), Expect = 4e-12
Identities = 12/87 (13%), Positives = 24/87 (27%)
Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403
+ + +A L ++ + + +A L V A G
Sbjct: 685 RLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 744
Query: 404 REMLGYYKEAIEDFSYALVLEPTNKRA 430
++ L + + A L P A
Sbjct: 745 KQALETVQRLLPVLCQAHGLTPAQVVA 771
Score = 64.7 bits (157), Expect = 3e-11
Identities = 10/87 (11%), Positives = 24/87 (27%)
Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403
+ + +A L + ++ + + + L V A
Sbjct: 413 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGG 472
Query: 404 REMLGYYKEAIEDFSYALVLEPTNKRA 430
++ L ++ + A L P A
Sbjct: 473 KQALETVQQLLPVLCQAHGLTPDQVVA 499
Score = 62.0 bits (150), Expect = 2e-10
Identities = 10/99 (10%), Positives = 25/99 (25%)
Query: 341 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400
+ + +A L + ++ + + +A L V A
Sbjct: 716 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASN 775
Query: 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439
++ L + + L A S ++
Sbjct: 776 IGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQ 814
Score = 53.1 bits (127), Expect = 1e-07
Identities = 13/87 (14%), Positives = 22/87 (25%)
Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403
A ++L+ + R A +NL V A
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201
Query: 404 REMLGYYKEAIEDFSYALVLEPTNKRA 430
++ L + + A L P A
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQVVA 228
Score = 52.0 bits (124), Expect = 3e-07
Identities = 10/96 (10%), Positives = 24/96 (25%)
Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403
+ + +A L ++ + + + L V A
Sbjct: 753 RLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGG 812
Query: 404 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439
++ L + + A L A S ++
Sbjct: 813 KQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQ 848
Score = 41.2 bits (96), Expect = 7e-04
Identities = 19/138 (13%), Positives = 32/138 (23%), Gaps = 17/138 (12%)
Query: 304 QEQADIATKSKLSTNTFNQKQSAEIAKEKGN-QAYKDKQWLKAISFYTEAIKLNGNNATY 362
E + Q IA G QA + Q + + +A L +
Sbjct: 782 LETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQ--RLLPVLCQAHGLTQDQVVA 839
Query: 363 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF----- 417
++ + + + L V A K+A+E
Sbjct: 840 IASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGG-------KQALETVQRLLP 892
Query: 418 --SYALVLEPTNKRASLS 433
L A S
Sbjct: 893 VLCQDHGLTLDQVVAIAS 910
Score = 35.0 bits (80), Expect = 0.063
Identities = 20/145 (13%), Positives = 34/145 (23%), Gaps = 17/145 (11%)
Query: 297 QNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 356
E + Q IA G QA + Q + + + L
Sbjct: 877 NIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQALETVQ--RLLPVLCQDHGLT 934
Query: 357 GNNATYYSNRAAAYLESGSFLQA-------EADCTKAINLDKKNVKAYLRRGTAREMLGY 409
++ A + QA + L V A G + L
Sbjct: 935 -------PDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGK-QALES 986
Query: 410 YKEAIEDFSYALVLEPTNKRASLSA 434
+ AL + +L+
Sbjct: 987 IVAQLSRPDPALAALTNDHLVALAC 1011
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 71.9 bits (177), Expect = 5e-14
Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 3/98 (3%)
Query: 332 KGNQAYKDKQWL--KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
G Y A + ++A L + ++ QA A A L
Sbjct: 96 VGC-YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154
Query: 390 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
K L G + K A FS AL + P +
Sbjct: 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192
Score = 70.4 bits (173), Expect = 1e-13
Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 9/109 (8%)
Query: 331 EKGNQAYKDKQWLKAISFYTEAIKLNG---------NNATYYSNRAAAYLESGSFLQAEA 381
E G A+++ +W A ++ +A++ +N + + +A
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257
Query: 382 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A+ L +N Y G ++G ++ A++ F AL L + +
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306
Score = 70.0 bits (172), Expect = 2e-13
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
G+ K K++ +A+ ++ +A+ L NA+ YS + G+F A A+ L +
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDF 417
+ + G EM EA
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAYIGA 327
Score = 69.2 bits (170), Expect = 3e-13
Identities = 15/92 (16%), Positives = 30/92 (32%)
Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 403
+A++ Y A +L Y + + AE ++A+++ ++ G
Sbjct: 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202
Query: 404 REMLGYYKEAIEDFSYALVLEPTNKRASLSAD 435
G +K A + F AL
Sbjct: 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234
Score = 68.5 bits (168), Expect = 6e-13
Identities = 17/130 (13%), Positives = 43/130 (33%), Gaps = 5/130 (3%)
Query: 302 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 361
S + ++ + +++ ++ + Y + + + ++ + +A+
Sbjct: 2 SYNKPSETVIPESVDGL----QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS 57
Query: 362 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-YYKEAIEDFSYA 420
+E + K ++L N ++ G M+G + A S A
Sbjct: 58 CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA 117
Query: 421 LVLEPTNKRA 430
LE T A
Sbjct: 118 TTLEKTYGPA 127
Score = 67.3 bits (165), Expect = 1e-12
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 9/105 (8%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
G + A F+++A+ + + ++G + AE A+ K
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224
Query: 392 ---------KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
K G L Y EA++ ALVL P N
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN 269
Score = 62.7 bits (153), Expect = 5e-11
Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 1/100 (1%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-QAEADCTKAINLD 390
+ + + + + L +N + YL G A +KA L+
Sbjct: 62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE 121
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
K A++ G + + + +A+ + A L
Sbjct: 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLP 161
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 69.1 bits (170), Expect = 1e-13
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 332 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
+G Y + KA + +A+ L + S A YL G +A A KA+
Sbjct: 124 RGL-VYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
K++ +R +A + G +EA + AL
Sbjct: 182 PKDLDLRVRYASALLLKGKAEEAAR--AAALEHHH 214
Score = 67.6 bits (166), Expect = 3e-13
Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 1/105 (0%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
+ ++ ++ +A+S +A ++N A + R Y G +AEA +
Sbjct: 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143
Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
A+ L + + +G EA+ ++ AL P +
Sbjct: 144 ALAL-EDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL 187
Score = 66.8 bits (164), Expect = 5e-13
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 11/105 (10%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
G Q Y ++ A++ + A+K N + A L+ G A + +
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70
Query: 392 KNVKAYLRRGTA-----------REMLGYYKEAIEDFSYALVLEP 425
+ + Y+ A GY ++A+ A + P
Sbjct: 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP 115
Score = 65.6 bits (161), Expect = 1e-12
Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 13/106 (12%)
Query: 332 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-----------SGSFLQA 379
A+ + Y + AY+ G QA
Sbjct: 45 LAR-TQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQA 103
Query: 380 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
+ A ++ + +L+RG +LG +A AL LE
Sbjct: 104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED 149
Score = 52.5 bits (127), Expect = 4e-08
Identities = 9/68 (13%), Positives = 20/68 (29%)
Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
G + A +A+ + ++ +A + LG A+E+
Sbjct: 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENG 62
Query: 418 SYALVLEP 425
+ P
Sbjct: 63 KTLVARTP 70
Score = 45.2 bits (108), Expect = 1e-05
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 332 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
Y L +A++ Y +A++ + A+A L G +A +
Sbjct: 157 LAE-LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215
Score = 32.5 bits (75), Expect = 0.20
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
+ + LR G LG Y A+ F AL P +
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD 38
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 65.6 bits (160), Expect = 2e-13
Identities = 15/105 (14%), Positives = 29/105 (27%)
Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 380
N E E+G K +A + + + + E+ A
Sbjct: 12 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71
Query: 381 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
A LD K++ + + A+ L+ +P
Sbjct: 72 IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116
Score = 52.8 bits (127), Expect = 7e-09
Identities = 9/66 (13%), Positives = 23/66 (34%)
Query: 365 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 424
+ L+ + +A + + +A+ G + AI ++A +L+
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 425 PTNKRA 430
P +
Sbjct: 82 PKDIAV 87
Score = 42.4 bits (100), Expect = 3e-05
Identities = 9/69 (13%), Positives = 24/69 (34%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
+ E + G ++++ AI A L+ + ++ A ++ + A A
Sbjct: 49 EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL 108
Query: 384 TKAINLDKK 392
+ +
Sbjct: 109 RAWLLSQPQ 117
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 70.6 bits (172), Expect = 3e-13
Identities = 24/98 (24%), Positives = 40/98 (40%)
Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
+ + + +A+ Y EAI+++ A YSN E A T+AI ++
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109
Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
A+ + + G EAI + AL L+P A
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147
Score = 68.7 bits (167), Expect = 1e-12
Identities = 19/98 (19%), Positives = 41/98 (41%)
Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
N + +A+ Y +A+++ A +SN A+ + G +A +AI +
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75
Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
AY G + + + A++ ++ A+ + P A
Sbjct: 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA 113
Score = 61.7 bits (149), Expect = 2e-10
Identities = 22/108 (20%), Positives = 43/108 (39%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
A+ GN + + A+ YT AI++N A +SN A+ + +SG+ +A A
Sbjct: 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS 431
A+ L AY +++ + + E + + +
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKN 182
Score = 51.3 bits (122), Expect = 5e-07
Identities = 15/70 (21%), Positives = 30/70 (42%)
Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
+A +N A E G+ +A KA+ + + A+ + + G +EA+ +
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66
Query: 418 SYALVLEPTN 427
A+ + PT
Sbjct: 67 KEAIRISPTF 76
Score = 34.0 bits (77), Expect = 0.11
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 1/94 (1%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
A+ + +AI+ Y A+KL + Y N A + +
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
K +++ ++ R + F
Sbjct: 169 KKLVSIVADQLEKN-RLPSVHPHHSMLYPLSHGF 201
Score = 30.5 bits (68), Expect = 1.3
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ + + G +EA+ + AL + P A
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 45
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 69.5 bits (170), Expect = 7e-13
Identities = 13/107 (12%), Positives = 26/107 (24%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
Q + + L+ + + +A
Sbjct: 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+A + ++ L G A E G + A ++ A L P
Sbjct: 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI 127
Score = 66.0 bits (161), Expect = 8e-12
Identities = 15/90 (16%), Positives = 27/90 (30%)
Query: 341 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400
+ + A++ + + A A L G E + + L + +A R
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 401 GTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
G R + EA A P +
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93
Score = 49.5 bits (118), Expect = 1e-06
Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 1/110 (0%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 383
E G + ++ +A +A + A ++G A A
Sbjct: 55 GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114
Query: 384 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 433
T+A L + + R L + A++ S + ++
Sbjct: 115 TRAHQLLPEEPYITAQLLNWRRRLCDW-RALDVLSAQVRAAVAQGVGAVE 163
Score = 44.5 bits (105), Expect = 5e-05
Identities = 9/58 (15%), Positives = 17/58 (29%)
Query: 373 SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ + A+ ++ A+L A +G L L P + A
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA 59
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 64.9 bits (158), Expect = 8e-13
Identities = 17/88 (19%), Positives = 32/88 (36%)
Query: 343 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 402
+++ + + A +SG + A LD + + +L G
Sbjct: 4 GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA 63
Query: 403 AREMLGYYKEAIEDFSYALVLEPTNKRA 430
R+ +G Y AI +SY V++ R
Sbjct: 64 CRQAMGQYDLAIHSYSYGAVMDIXEPRF 91
Score = 48.8 bits (116), Expect = 3e-07
Identities = 16/83 (19%), Positives = 26/83 (31%)
Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
G Q+ AI Y+ ++ + + A L+ G +AE+ A L
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 393 NVKAYLRRGTAREMLGYYKEAIE 415
+ ML K E
Sbjct: 122 XPEFXELSTRVSSMLEAIKLKKE 144
Score = 40.3 bits (94), Expect = 2e-04
Identities = 8/57 (14%), Positives = 16/57 (28%)
Query: 374 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
G + ++ + G Y++A F VL+ + R
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 66.5 bits (163), Expect = 8e-13
Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
Query: 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 382
Q + I + + + + + +A + +A+K + N + RA Y +A+
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64
Query: 383 CTKAINLDKKNVKAYLRRGTA-REMLGYYKEAIEDFSYAL 421
+A+++ + + G L E++ F AL
Sbjct: 65 FRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKAL 104
Score = 59.2 bits (144), Expect = 2e-10
Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 344 KAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401
++++++ +A+ N+ + G F AEA +++ + A+
Sbjct: 95 ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELA 154
Query: 402 TAREMLGYYKEAIEDFSYALVLEPTNKRASL 432
+ + G +A F + L
Sbjct: 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDL 185
Score = 56.5 bits (137), Expect = 2e-09
Identities = 19/73 (26%), Positives = 30/73 (41%)
Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
+ + A Y+ + QA A A+ D KN A+L R + L +A E F
Sbjct: 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESF 65
Query: 418 SYALVLEPTNKRA 430
AL ++P +
Sbjct: 66 RQALSIKPDSAEI 78
Score = 56.1 bits (136), Expect = 3e-09
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 2/94 (2%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
KG + K Q+ A ++ ++ + A + +G A+ K + +
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178
Query: 392 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
L G A + Y L+
Sbjct: 179 VLQADDLLLGWKIA--KALGNAQAAYEYEAQLQA 210
Score = 28.4 bits (64), Expect = 3.9
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ + Y++A AL +P N+ A
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELA 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 65.4 bits (160), Expect = 3e-12
Identities = 16/124 (12%), Positives = 43/124 (34%)
Query: 298 NMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG 357
+ + L + + ++ + + G + +A +A++++
Sbjct: 9 HHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP 68
Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
++A ++ A + A+ + KA+ D +N + G Y+EA +
Sbjct: 69 SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRL 128
Query: 418 SYAL 421
A
Sbjct: 129 LEAS 132
Score = 65.0 bits (159), Expect = 4e-12
Identities = 18/82 (21%), Positives = 30/82 (36%)
Query: 349 YTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG 408
+ K Y YL+ G+ QA+ KA+ +D + A+ +
Sbjct: 26 PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEM 85
Query: 409 YYKEAIEDFSYALVLEPTNKRA 430
K A E++ AL + N R
Sbjct: 86 EPKLADEEYRKALASDSRNARV 107
Score = 61.5 bits (150), Expect = 5e-11
Identities = 13/98 (13%), Positives = 33/98 (33%)
Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
G + + K+ +A ++ ++++LN N + A + ++ A +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
N ++ L ++ A L P +
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245
Score = 60.7 bits (148), Expect = 1e-10
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 2/89 (2%)
Query: 344 KAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 401
+A EA + L + + N L+ QA+ K++ L++ L
Sbjct: 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMA 182
Query: 402 TAREMLGYYKEAIEDFSYALVLEPTNKRA 430
Y A + + N R+
Sbjct: 183 DLLYKEREYVPARQYYDLFAQGGGQNARS 211
Score = 39.6 bits (93), Expect = 0.001
Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 355 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 414
+ ++ ++ + S + + K + AY++ G G ++A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH---MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAK 57
Query: 415 EDFSYALVLEPTNKRA 430
AL ++P++ A
Sbjct: 58 VPLRKALEIDPSSADA 73
Score = 37.6 bits (88), Expect = 0.005
Identities = 11/65 (16%), Positives = 22/65 (33%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
+A E + YK+++++ A +Y + G NA A + +
Sbjct: 175 PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ 234
Query: 386 AINLD 390
L
Sbjct: 235 LKRLY 239
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 64.6 bits (157), Expect = 2e-11
Identities = 19/115 (16%), Positives = 43/115 (37%), Gaps = 4/115 (3%)
Query: 330 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
+ + A++ +A + N N S A+ + + + +AE K +
Sbjct: 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363
Query: 390 DKKNVKA---YLRRGTARE-MLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 440
+ V +LR G + + +AI F + + ++ D+L+K+
Sbjct: 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI 418
Score = 60.7 bits (147), Expect = 3e-10
Identities = 14/117 (11%), Positives = 28/117 (23%), Gaps = 19/117 (16%)
Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
+ ++ + EA++ + A Y +A KA+
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279
Query: 393 NVKAYLRRGTA-------------------REMLGYYKEAIEDFSYALVLEPTNKRA 430
N + + G R++L A+ A R
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336
Score = 60.7 bits (147), Expect = 4e-10
Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 9/116 (7%)
Query: 324 QSAEIAKEKGNQAYKD--KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE- 380
+S E+ E+G K Q +A + +A++ N + S A A ++ ++
Sbjct: 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQN 193
Query: 381 --ADCTKAINLDKKNVKAYLRRGTA----REMLGYYKEAIEDFSYALVLEPTNKRA 430
+AI L+ N + RE E + AL P
Sbjct: 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDV 249
Score = 54.9 bits (132), Expect = 3e-08
Identities = 25/152 (16%), Positives = 41/152 (26%), Gaps = 19/152 (12%)
Query: 298 NMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-- 355
N+ D K T N++ A + + Q A+ +A +L
Sbjct: 23 NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82
Query: 356 -------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA--------YLRR 400
+ + N A Y G + K ++ +K
Sbjct: 83 QEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142
Query: 401 GTAREMLG--YYKEAIEDFSYALVLEPTNKRA 430
G R G + A F AL +P N
Sbjct: 143 GWTRLKCGGNQNERAKVCFEKALEKKPKNPEF 174
Score = 53.8 bits (129), Expect = 6e-08
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 10/98 (10%)
Query: 335 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 394
Q Y+ K KAI + E +K+N + + LQ A ++ + +
Sbjct: 381 QLYQMKCEDKAIHHFIEGVKINQKSR--------EKEKMKDKLQKIAK--MRLSKNGADS 430
Query: 395 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 432
+A +E+ ++A ED L AS
Sbjct: 431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 63.6 bits (154), Expect = 3e-11
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 333 GNQAYKDKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
+KQ + + L N + Y +A + L G ++ I+L+
Sbjct: 248 SQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
+ Y+ G EM G +EA + + A L P
Sbjct: 308 M-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343
Score = 49.3 bits (117), Expect = 1e-06
Identities = 12/97 (12%), Positives = 31/97 (31%), Gaps = 10/97 (10%)
Query: 340 KQWLKAISFYTEAIKLNGNNATYYSNRAAAY--------LESGSFLQAEADCTKAINLDK 391
K +A E ++ + + +A L+ + + L +
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272
Query: 392 KNVKA--YLRRGTAREMLGYYKEAIEDFSYALVLEPT 426
N + Y + + + G E+ + + + LE +
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS 309
Score = 40.9 bits (95), Expect = 7e-04
Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 4/131 (3%)
Query: 290 RFLLDTVQNMYASLQEQADIATKSKLSTNTF--NQKQSAEIAKEKGNQAYKDKQWLKAIS 347
+ L+D V++ L E+ A +++ + I + K A + ++
Sbjct: 239 KALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQ 298
Query: 348 FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL-RRGTAREM 406
I L + Y Y G +A A NL Y G +
Sbjct: 299 AINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTS 357
Query: 407 LGYYKEAIEDF 417
+ Y ++ F
Sbjct: 358 VPYVVPYLDKF 368
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 59.0 bits (143), Expect = 4e-11
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Query: 344 KAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 400
+A+ +Y +AI Y + + G + +AEA + + +
Sbjct: 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67
Query: 401 GTAREMLGYYKEAIEDFSYALVLEPTNK 428
LG Y++ +E + ++
Sbjct: 68 AMVLYNLGRYEQGVELLLKIIAETSDDE 95
Score = 34.7 bits (80), Expect = 0.015
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 378 QAEADCTKAINL---DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
QA KAI K + YL G+ LG Y++A + + P ++
Sbjct: 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 60.3 bits (145), Expect = 4e-11
Identities = 23/141 (16%), Positives = 51/141 (36%), Gaps = 23/141 (16%)
Query: 322 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN------------GNNATYYSNRAAA 369
+ A +A + ++ +A + A++++ G +A ++ A A
Sbjct: 7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEA 66
Query: 370 YLESGSFLQAEADCTKAINLDKKN-----------VKAYLRRGTAREMLGYYKEAIEDFS 418
SF +A KA++ + + A R A + LG EA+ +F
Sbjct: 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 126
Query: 419 YALVLEPTNKRASLSADRLRK 439
+ + K + +R+ +
Sbjct: 127 KVVEMIEERKGETPGKERMME 147
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 60.9 bits (147), Expect = 1e-10
Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 1/119 (0%)
Query: 304 QEQADIATKSKLSTNTFNQKQS-AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY 362
++ D+A K ++ + ++A + A ++ A + E
Sbjct: 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLL 202
Query: 363 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 421
+ +AA ++ G + AE +A++ D + + + + LG E + L
Sbjct: 203 LNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261
Score = 49.0 bits (116), Expect = 1e-06
Identities = 14/112 (12%), Positives = 28/112 (25%), Gaps = 2/112 (1%)
Query: 318 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-- 375
T +Q S E K + A + + + A L +G
Sbjct: 122 RTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181
Query: 376 FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
A + + + + G ++ A AL + +
Sbjct: 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 2e-10
Identities = 66/493 (13%), Positives = 133/493 (26%), Gaps = 147/493 (29%)
Query: 1 MPG-GSSSGAAVAVAADLVD--FSLGID--TVGGVRVPSAFCGIL-----GFRPSYGA-V 49
+ G G + A + V I + P +L P++ +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 50 SHMGIIPISTS---------------------LDTVGWFARDPKILRHVGH---VLLQLP 85
H I + L V + K +LL
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-Q---NAKAWNAFNLSCKILL--- 270
Query: 86 FAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG---EYFDSKV 142
+ R + D + A + + E +Y D +
Sbjct: 271 -----TTRFKQVTDF------LSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRP 315
Query: 143 PSL-KGFHKTN-------GE-LKNVMRLIQRYE--FKNNHNEWIESVKPALDPDISAEIG 191
L + TN E +++ + ++ + IES L+P ++
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 192 EMLE-------ISETVIEN--CKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM 242
+ L I ++ I++++ ++ L K +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-------------------YSL 416
Query: 243 LSEDYQNRAFSLLSIASVSGCCQV--------------TVPLGY--YDKCPTSV-----S 281
+ + + S+ SI + ++ +P + D P + S
Sbjct: 417 VEKQPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 282 FIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQ 341
I H L +++ E+ + L QK + + + +
Sbjct: 476 HIGHH------LKNIEH-----PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT- 523
Query: 342 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-QAEADCTKAINLDKKNVKAYLRR 400
L+ + FY I +N Y A L+ FL + E + + D LR
Sbjct: 524 -LQQLKFYKPYIC---DNDPKYERLVNAILD---FLPKIEENLICSKYTD------LLRI 570
Query: 401 GTAREMLGYYKEA 413
E ++EA
Sbjct: 571 ALMAEDEAIFEEA 583
Score = 52.5 bits (125), Expect = 2e-07
Identities = 56/403 (13%), Positives = 118/403 (29%), Gaps = 129/403 (32%)
Query: 89 QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGF 148
Q P+ I+ ++ ++ D V T +LF + K E + + F ++
Sbjct: 39 QDMPKSILSKEEIDHIIMSK-DAVSG-----TLRLFWTLLSKQEEMVQKF------VEEV 86
Query: 149 HKTNGELKNVMRLIQRYEFKNNHNEWI------ESVKPALDPDISAEIGEMLEISETVIE 202
+ N Y +++ E +P++ + E + L V
Sbjct: 87 LRIN------------Y-------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 203 NCKSIRNEM----RSAISSLLKDDGILVTPTTAYPPPKLG----GKEMLSEDYQNRAFSL 254
R + R A+ L +L+ G GK + A +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLI-----D-----GVLGSGKTWV-------ALDV 170
Query: 255 LSIASVSGCCQVTVPLG-YYDKCPTSVSFIARHGGDRFLLDTVQNMYA----SLQEQADI 309
V Q + ++ ++ +L+ +Q + + ++D
Sbjct: 171 CLSYKV----QCKMDFKIFW------LNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 310 ATKSKLSTNTFNQKQSAEIAKEKGNQAY------KDKQWLKAISF--------------- 348
++ KL ++ + + + ++ + A +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 349 -----YTEAIKLNGNNATYYSNRA----AAYLESGSF-LQAEADCT---KAINLDKKNVK 395
T I L+ ++ T + YL+ L E T + +++ +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLSI----IA 334
Query: 396 AYLRRGTAREMLGYYK--------EAIEDFSYALVLEPTNKRA 430
+R G A +K IE S VLEP R
Sbjct: 335 ESIRDGLAT--WDNWKHVNCDKLTTIIES-SLN-VLEPAEYRK 373
Score = 46.8 bits (110), Expect = 1e-05
Identities = 40/271 (14%), Positives = 89/271 (32%), Gaps = 66/271 (24%)
Query: 189 EIGEM-------LEI-SETVIEN--CKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG 238
E GE L + + ++N CK +++ +S +S D I+++ +L
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-IIMSKDAVSGTLRLF 68
Query: 239 G--------------KEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY----DKCPTSV 280
+E+L +Y+ F + I + Q ++ Y D+
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYK---FLMSPIKTE--QRQPSMMTRMYIEQRDRLYNDN 123
Query: 281 SFIARHGGDRF-LLDTVQNMYASLQEQADIAT-------KSKLSTNTFNQKQSAEIAKEK 332
A++ R ++ L+ ++ K+ ++ + S ++ +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC---LSYKVQCKM 180
Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
+ + WL + + L Y + +D + I L
Sbjct: 181 DFKIF----WLNLKNCNSPETVLEMLQKLLYQID--------PNWTSRSDHSSNIKLRIH 228
Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423
+++A LRR + Y+ + LVL
Sbjct: 229 SIQAELRRLLKSKP---YENCL------LVL 250
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 61.2 bits (148), Expect = 2e-10
Identities = 14/88 (15%), Positives = 28/88 (31%)
Query: 340 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399
K + +++ T I+ N + +R Q +N D KN A+
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205
Query: 400 RGTAREMLGYYKEAIEDFSYALVLEPTN 427
R + + ++ L + N
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRN 233
Score = 55.5 bits (133), Expect = 1e-08
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 1/100 (1%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT-KAINLD 390
+D++ +A +AI+LN N T + R L E + I
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162
Query: 391 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
KN + + R E L + +E + L + N A
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202
Score = 52.0 bits (124), Expect = 2e-07
Identities = 11/102 (10%), Positives = 30/102 (29%), Gaps = 6/102 (5%)
Query: 332 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 391
+ + + + F + + + N + +R E + + + D
Sbjct: 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231
Query: 392 KNVKAYLRRGTAREMLGYY------KEAIEDFSYALVLEPTN 427
+N + +R Y + ++ + L P N
Sbjct: 232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN 273
Score = 38.5 bits (89), Expect = 0.003
Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 8/104 (7%)
Query: 340 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 399
+ + + E IKL +N + + N L+ + + ++L + YL
Sbjct: 254 AVLEREVQYTLEMIKLVPHNESAW-NYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLI 312
Query: 400 RGTAR----EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439
+ + + AL L + + D +RK
Sbjct: 313 AFLVDIYEDMLENQCDNKEDILNKALEL---CEILAKEKDTIRK 353
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 56.3 bits (137), Expect = 2e-10
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 332 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 390
GN AY + +AI +Y +A++L+ NNA + N AY + G + +A KA+ LD
Sbjct: 15 LGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 391 KKNVKAYLRRGTAREMLG 408
N +A G A++ G
Sbjct: 74 PNNAEAKQNLGNAKQKQG 91
Score = 53.6 bits (130), Expect = 2e-09
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
N+A + N AY + G + +A KA+ LD N +A+ G A G Y EAIE +
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 418 SYALVLEP 425
AL L+P
Sbjct: 67 QKALELDP 74
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 58.3 bits (141), Expect = 2e-10
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS---FLQAEADCTKAINL 389
G + ++ Y +A++L G NA Y+ A S Q A KA+ L
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110
Query: 390 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
D + A + + M Y +AIE + + L
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148
Score = 58.0 bits (140), Expect = 3e-10
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 3/111 (2%)
Query: 323 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 382
+ + ++ +Q + + + I+ N N+ ++ YL + +
Sbjct: 7 RAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLA 66
Query: 383 CTKAINLDKKNVKAYLRRGTAREMLG---YYKEAIEDFSYALVLEPTNKRA 430
+A+ L +N + Y T + AL L+ A
Sbjct: 67 YRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA 117
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 55.4 bits (134), Expect = 5e-10
Identities = 12/73 (16%), Positives = 25/73 (34%)
Query: 358 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 417
+ A +L+ + +A A + + D V Y G E L +AI+ +
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64
Query: 418 SYALVLEPTNKRA 430
+ + +
Sbjct: 65 AQGIEVAREEGTQ 77
Score = 52.3 bits (126), Expect = 6e-09
Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 4/81 (4%)
Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
+ K +A++ + E ++ + + Y + Y A + I + ++
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73
Query: 393 NVKAYLRRGTAREMLGYYKEA 413
E+ +A
Sbjct: 74 EGTQK----DLSELQDAKLKA 90
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 53.5 bits (129), Expect = 2e-09
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 1/90 (1%)
Query: 331 EKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINL 389
+ + A+ E ++ Y AY + G + +A + AI L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 390 DKKNVKAYLRRGTAREMLGYYKEAIEDFSY 419
+ + R+ + Y K+ +
Sbjct: 65 NPDSPALQARKMVMDILNFYNKDMYNQLEH 94
Score = 50.4 bits (121), Expect = 3e-08
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 365 NRAAAYLESGSFLQAEADCTKAINLDKKNV-KAYLRRGTAREMLGYYKEAIEDFSYALVL 423
+ G A + + + +AY G A LG +++A+ ++ A+ L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 424 EPTNKRA 430
P +
Sbjct: 65 NPDSPAL 71
Score = 27.7 bits (62), Expect = 3.0
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 397 YLRRGTAREMLGYYKEAIEDFSYALVLEPTN 427
L+ G + A++ L EP
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQTEPVG 33
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 1e-08
Identities = 77/459 (16%), Positives = 132/459 (28%), Gaps = 166/459 (36%)
Query: 43 RP---SYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQL--PFAAQR-SPRQII 96
RP S+G++ H ++ + T+ +F QL F P +
Sbjct: 7 RPLTLSHGSLEH--VLLVPTAS----FFI------------ASQLQEQFNKILPEPTEGF 48
Query: 97 IADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELK 156
ADD E P + +L G+ LG Y S V G+
Sbjct: 49 AADD--E----PT---------TPAELVGKF------LG-YVSSLVEP-----SKVGQFD 81
Query: 157 NVMRLIQRYEFKNN---HNEWIESVKPALDPDISAEIGEMLEISETVIENCKSI-RNEMR 212
V+ L EF+N N+ I ++ L + + + E+ + I R +
Sbjct: 82 QVLNLCLT-EFENCYLEGND-IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 213 SAISSLLK--DDGILVTPTTAYPPPKL----GG--------KEM--LSEDYQ-------N 249
+ S+L + +G A +L GG +E+ L + Y
Sbjct: 140 KSNSALFRAVGEG------NA----QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 250 RAFSLL-SIASVSGCCQVTVPLG-----------------YYDKCPTSVSFIARHGGDRF 291
+ L + + + G Y P S I
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI-------G 242
Query: 292 LLDTVQNMYASLQEQADIAT---KSKLSTNTFNQKQ---SAEIAKEKGNQAYKDKQWLKA 345
++ Y + +S L T + + + IA+ W
Sbjct: 243 VIQLAH--YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS--------W--- 289
Query: 346 ISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA---INLDKKNVKAYLRR-- 400
SF+ K A L F C +A +L ++ L
Sbjct: 290 ESFFVSVRK------------AITVL----FFIG-VRCYEAYPNTSLPPSILEDSLENNE 332
Query: 401 GTAREML---GYYKEAIEDFSYALVLEPTNKRASLSADR 436
G ML +E ++D+ + TN L A +
Sbjct: 333 GVPSPMLSISNLTQEQVQDY-----VNKTNS--HLPAGK 364
Score = 38.5 bits (89), Expect = 0.005
Identities = 49/250 (19%), Positives = 79/250 (31%), Gaps = 69/250 (27%)
Query: 35 AFCGILGFRPS------YGAVSHM-GII---PISTSLDTVGWFARDPKILRHVGHVLLQL 84
+LGF P GA H G++ I+ + +F K + VL +
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT----VLFFI 306
Query: 85 PFAAQRS-PRQII---IADDCFE--------LLKI--PADRVVQVVIKSTEKLF--GRQV 128
+ P + I +D E +L I VQ + T G+QV
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 129 ---LKHENLGEYFDSKV----P-SLKGFHKTNGELKNVMRLIQ-RYEF---KNN------ 170
L N G + V P SL G + T + K L Q R F K
Sbjct: 367 EISLV--N-G--AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 171 ------HNEWIESVKPALDPDISAEI----GEMLEISETV--IENCKSIRNEMRSAISSL 218
H+ + ++ D+ + ++I V + +R S +
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI--PVYDTFDGSDLRVLSGSISERI 479
Query: 219 LKDDGILVTP 228
+ D I+ P
Sbjct: 480 V--DCIIRLP 487
Score = 36.2 bits (83), Expect = 0.025
Identities = 51/296 (17%), Positives = 93/296 (31%), Gaps = 96/296 (32%)
Query: 6 SSGAAVAV--AAD--LVDFSLGIDTVGGVRV-PSA----FCGILG--FRPSYGAVSHMGI 54
+S AA V AD D + G + V P F G G R +Y A+
Sbjct: 1638 TSKAAQDVWNRADNHFKD-TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF--- 1693
Query: 55 IPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQ 114
T +D + KI + + F RS + LL Q
Sbjct: 1694 ---ETIVDG---KLKTEKIFKEINEHSTSYTF---RSEK---------GLLSATQ--FTQ 1733
Query: 115 VVIKSTEK-LFGRQVLKHEN------------LGEY-----------FDSKVPSLKGFHK 150
+ EK F + LK + LGEY +S V + F++
Sbjct: 1734 PALTLMEKAAF--EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV--FYR 1789
Query: 151 TNGELKNVMRLIQRYEFKNNHNEWIESVKPA-----LDPD--------ISAEIGEMLEIS 197
G + + R E N + ++ P + + G ++EI
Sbjct: 1790 --GMT--MQVAVPRDE-LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI- 1843
Query: 198 ETVIENCKS----IRNEMRS--AISSLLKDDGI----LVTPTTAYPPPKLGGKEML 243
V N ++ ++R+ ++++L + ++ + ++ + L
Sbjct: 1844 --VNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV--EGHL 1895
Score = 35.4 bits (81), Expect = 0.042
Identities = 37/263 (14%), Positives = 68/263 (25%), Gaps = 88/263 (33%)
Query: 3 GGSSSGAAVAVAA------------DLVDFSLGIDTVGGVRVPSAFCGILGFRPSY---- 46
G + + A V ++ + GVR A+ PS
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY-PNTSLPPSILEDS 327
Query: 47 -----GAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ------RSPRQI 95
G S M L ++ +V LP Q + +
Sbjct: 328 LENNEGVPSPM--------LSISN--LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 96 IIA---DD----CFELLKIPADRVV-QVVIK-STEKL-FGRQVLK-----HENL------ 134
+++ L K A + Q I S KL F + L H +L
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 135 -------GEYFDSKVPSLKG--FHKTNGE---------LKNVMRLIQRYEFKNNHNEWIE 176
++ + +G + ++ I R +W
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR-----LPVKWET 492
Query: 177 SVKP----ALD--PDISAEIGEM 193
+ + LD P ++ +G +
Sbjct: 493 TTQFKATHILDFGPGGASGLGVL 515
Score = 31.9 bits (72), Expect = 0.57
Identities = 55/362 (15%), Positives = 95/362 (26%), Gaps = 146/362 (40%)
Query: 89 QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLK--HENLGEYFDSKVPSLK 146
+ S A D + AD + +G +L N P
Sbjct: 1637 KTSK----AAQDVWNR----AD-------NHFKDTYGFSILDIVINN---------PVNL 1672
Query: 147 GFHKTNGELK------NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI--GEMLEISE 198
H G K N +I +E + E + ++ ++ E +S
Sbjct: 1673 TIH--FGGEKGKRIRENYSAMI--FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 199 TVIEN------CKSIRNEMRSAISSLLKDDGILVTPTTAYPPPK------LGGKEMLSED 246
T + A LK G++ P LG E
Sbjct: 1729 T--QFTQPALTLMEK------AAFEDLKSKGLI-------PADATFAGHSLG--E----- 1766
Query: 247 YQNRAFS-LLSIASV-S-----------G-CCQVTVPLGYYDKCPTSVSFIARHGGDRFL 292
++ L S+A V S G QV VP + ++ IA + G
Sbjct: 1767 -----YAALASLADVMSIESLVEVVFYRGMTMQVAVPRD--ELGRSNYGMIAINPG---- 1815
Query: 293 LDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAY--KDKQW-----LKA 345
+ AS ++A ++ T EI N Y +++Q+ L+A
Sbjct: 1816 -----RVAASFSQEALQYVVERVGKRT---GWLVEIV----N--YNVENQQYVAAGDLRA 1861
Query: 346 ISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 405
+ T + + I++ + L
Sbjct: 1862 LDTVTNVLNFIK--------------------------LQKIDIIELQKSLSLEE--VEG 1893
Query: 406 ML 407
L
Sbjct: 1894 HL 1895
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 49.6 bits (119), Expect = 1e-06
Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 10/111 (9%)
Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSF 376
+ + S +G + K +SF+ A+++ + + YS AY +
Sbjct: 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 63
Query: 377 LQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIEDFSYAL 421
+A + L D+ KA G ++LG + EAI L
Sbjct: 64 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 114
Score = 40.0 bits (94), Expect = 0.001
Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 25/126 (19%)
Query: 323 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN---ATYY 363
+++ + G++ + + A+ + + + + G+ Y
Sbjct: 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 230
Query: 364 SNRAAAYLESGSFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIEDF 417
SN AY+ G F A K + L D+ ++ G +L Y++AI+
Sbjct: 231 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 290
Query: 418 SYALVL 423
L +
Sbjct: 291 LKHLAI 296
Score = 39.6 bits (93), Expect = 0.002
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 25/124 (20%)
Query: 323 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN---ATYY 363
+Q IAKE G++ AY ++ A +Y + + L + A
Sbjct: 211 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 270
Query: 364 SNRAAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIEDF 417
+ Y + +A K + + ++ +A G A LG + +A+
Sbjct: 271 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330
Query: 418 SYAL 421
L
Sbjct: 331 EKHL 334
Score = 37.7 bits (88), Expect = 0.006
Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 12/115 (10%)
Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---GNN---ATYYSNRAAAYLESG 374
A+ FY E + L G+ + N + G
Sbjct: 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 201
Query: 375 SFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIEDFSYALVL 423
+F A + + + DK +AY G A LG ++ A E + L+L
Sbjct: 202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256
Score = 36.1 bits (84), Expect = 0.020
Identities = 15/131 (11%), Positives = 40/131 (30%), Gaps = 32/131 (24%)
Query: 323 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN---ATYY 363
K++ +A++ ++ Y + KAI ++ + + + +
Sbjct: 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC 310
Query: 364 SNRAAAYLESGSFLQAEADCTKAINLDKK------------NV-KAYLRRGTAREMLGYY 410
+ AY G+ QA K + + ++ N+ + G +
Sbjct: 311 WSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370
Query: 411 KEAIEDFSYAL 421
+ +L
Sbjct: 371 MSENTEIDSSL 381
Score = 34.6 bits (80), Expect = 0.060
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK----AYLRRGTAREMLGYYKEAIE 415
+ +SG + A+ + +++K Y + G A L Y +A+E
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 416 DFSYALVL 423
+ L L
Sbjct: 69 YHHHDLTL 76
Score = 31.9 bits (73), Expect = 0.40
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 336 AYKDK-QWLKAISFYTEAIKLN---GNN---ATYYSNRAAAYLESGSFLQAEADCTKAIN 388
AY + KA+ ++ + L G+ A N G+F +A C + ++
Sbjct: 56 AYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 115
Query: 389 LDKK 392
+ ++
Sbjct: 116 ISRE 119
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 47.5 bits (112), Expect = 1e-06
Identities = 18/105 (17%), Positives = 29/105 (27%), Gaps = 21/105 (20%)
Query: 344 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE----------ADCTKAINLDKKN 393
+ K N +A + LE F +A+ +D K
Sbjct: 20 QIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK 79
Query: 394 VKAYLRRGTA-----------REMLGYYKEAIEDFSYALVLEPTN 427
+A G A E + A + F A+ +P N
Sbjct: 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 48.0 bits (114), Expect = 3e-06
Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 12/113 (10%)
Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESG 374
+A +A ++ + + KA+ Y +A + N A + +
Sbjct: 110 GTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ 169
Query: 375 SFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIEDFSYAL 421
F +A A K ++ K+ K + + + Y A + +
Sbjct: 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222
Score = 46.0 bits (109), Expect = 1e-05
Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 11/150 (7%)
Query: 302 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-- 359
+A+ K+ + +A + KQ +A Y + + + NN
Sbjct: 12 EHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS 71
Query: 360 ----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK-----AYLRRGTAREMLGYY 410
A + + +A KA + +N L R
Sbjct: 72 LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDL 131
Query: 411 KEAIEDFSYALVLEPTNKRASLSADRLRKV 440
+A+ + A + +R +A+ + K
Sbjct: 132 SKAVHLYQQAAAVFENEERLRQAAELIGKA 161
Score = 38.3 bits (89), Expect = 0.003
Identities = 12/121 (9%), Positives = 36/121 (29%), Gaps = 13/121 (10%)
Query: 283 IARHGGDRFLLDTVQNMYASLQEQADI--ATKS-----KLSTNTFNQKQSAEIAKEKGNQ 335
+ G + L E D+ A + N +Q+AE+ +
Sbjct: 105 MYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRL 164
Query: 336 AYKDKQWLKAISFYTEAIKLN------GNNATYYSNRAAAYLESGSFLQAEADCTKAINL 389
+ +++ +A + + + + L ++ A+ ++ ++
Sbjct: 165 LVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224
Query: 390 D 390
Sbjct: 225 P 225
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 46.1 bits (110), Expect = 1e-05
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 10/99 (10%)
Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAIN 388
G + K +SF+ A+++ + + YS AY + +A +
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71
Query: 389 L-----DKKNV-KAYLRRGTAREMLGYYKEAIEDFSYAL 421
L D+ KA G ++LG + EAI L
Sbjct: 72 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 110
Score = 39.5 bits (93), Expect = 0.001
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 25/124 (20%)
Query: 323 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN---ATYY 363
+Q IAKE G++ AY ++ A +Y + + L + A
Sbjct: 207 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 266
Query: 364 SNRAAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIEDF 417
+ Y + +A K + + ++ +A G A LG + +A+
Sbjct: 267 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326
Query: 418 SYAL 421
L
Sbjct: 327 EKHL 330
Score = 39.5 bits (93), Expect = 0.002
Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 25/126 (19%)
Query: 323 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN---ATYY 363
+++ + G++ + + A+ + + + + G+ Y
Sbjct: 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 226
Query: 364 SNRAAAYLESGSFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIEDF 417
SN AY+ G F A K + L D+ ++ G +L Y++AI+
Sbjct: 227 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 286
Query: 418 SYALVL 423
L +
Sbjct: 287 LKHLAI 292
Score = 35.3 bits (82), Expect = 0.034
Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 12/115 (10%)
Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---GNN---ATYYSNRAAAYLESG 374
A+ Y E + L G+ + N + G
Sbjct: 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 197
Query: 375 SFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIEDFSYALVL 423
+F A + + + DK +AY G A LG ++ A E + L+L
Sbjct: 198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252
Score = 34.5 bits (80), Expect = 0.058
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 360 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----VKAYLRRGTAREMLGYYKEAIE 415
+ +SG + A+ + ++ Y + G A L Y +A+E
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64
Query: 416 DFSYALVL 423
+ L L
Sbjct: 65 YHHHDLTL 72
Score = 31.4 bits (72), Expect = 0.47
Identities = 12/89 (13%), Positives = 33/89 (37%), Gaps = 19/89 (21%)
Query: 323 KQSAEIAKEKGNQ------------AYKD-KQWLKAISFYTEAIKLN---GNN---ATYY 363
K++ +A++ ++ Y + + KAI ++ + + + +
Sbjct: 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 306
Query: 364 SNRAAAYLESGSFLQAEADCTKAINLDKK 392
+ AY G+ QA K + + ++
Sbjct: 307 WSLGNAYTALGNHDQAMHFAEKHLEISRE 335
Score = 31.1 bits (71), Expect = 0.62
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 336 AYKDK-QWLKAISFYTEAIKLN---GNN---ATYYSNRAAAYLESGSFLQAEADCTKAIN 388
AY + KA+ ++ + L G+ A N G+F +A C + ++
Sbjct: 52 AYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 111
Query: 389 LDKK 392
+ ++
Sbjct: 112 ISRE 115
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 44.2 bits (105), Expect = 2e-05
Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 26/127 (20%)
Query: 323 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN----ATY 362
+ + A++ G+ + W A + E +L + +
Sbjct: 50 QALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASAN 109
Query: 363 YSNRAAAYLESGSFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIED 416
A L G A + K++ D+ + A+ G + EA +
Sbjct: 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQH 169
Query: 417 FSYALVL 423
+ A +
Sbjct: 170 WLRARDI 176
Score = 35.7 bits (83), Expect = 0.015
Identities = 13/93 (13%), Positives = 22/93 (23%), Gaps = 12/93 (12%)
Query: 343 LKAISFYTEAIKLN---GNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-----DK 391
+A + + + + Y F +A A D
Sbjct: 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH 62
Query: 392 KNV-KAYLRRGTAREMLGYYKEAIEDFSYALVL 423
+A + G M G + A F L
Sbjct: 63 TAEHRALHQVGMVERMAGNWDAARRCFLEEREL 95
Score = 31.1 bits (71), Expect = 0.46
Identities = 10/114 (8%), Positives = 28/114 (24%), Gaps = 26/114 (22%)
Query: 323 KQSAEIAKEKGNQAYKDKQWL--------------KAISFYTEAIKLN---GNN---ATY 362
+ E+ A Y +++ + A
Sbjct: 90 LEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149
Query: 363 YSNRAAAYLESGSFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYY 410
+ + + L+A+ +A ++ D + V + R ++
Sbjct: 150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203
Score = 30.7 bits (70), Expect = 0.64
Identities = 9/55 (16%), Positives = 14/55 (25%)
Query: 369 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 423
A E+ + AE + A G + + EA F
Sbjct: 1 AAFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ 55
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 45.2 bits (107), Expect = 3e-05
Identities = 20/147 (13%), Positives = 51/147 (34%), Gaps = 17/147 (11%)
Query: 292 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIA----KEKGNQAYKDKQWLKAIS 347
+L+ ++ + E+ + L + + + + +G +++L AI
Sbjct: 65 MLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIK 124
Query: 348 FYTEAIKL------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------V 394
F+ +A A ++ + +Y + +A + K++ +
Sbjct: 125 FFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184
Query: 395 KAYLRRGTAREMLGYYKEAIEDFSYAL 421
+ + T L Y++AI F A
Sbjct: 185 QCHSLFATNFLDLKQYEDAISHFQKAY 211
Score = 42.9 bits (101), Expect = 1e-04
Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 13/123 (10%)
Query: 314 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNR 366
++ + AE + Y KQ ++ + +A ++ N +S
Sbjct: 131 SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190
Query: 367 AAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIEDFSYA 420
A +L+ + A + KA ++ + + G + Y++AI F A
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250
Query: 421 LVL 423
+ +
Sbjct: 251 IAV 253
Score = 33.6 bits (77), Expect = 0.12
Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 20/119 (16%)
Query: 323 KQSAEIAKEKGNQ------------AYKD-KQWLKAISFYTEAIKLN------GNNATYY 363
+++ +A+ + Q+ AI ++ AI + + Y
Sbjct: 208 QKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267
Query: 364 SNRAAAYLESGSFLQAEADCTKAINLDKK-NVKAYLRRGTAREMLGYYKEAIEDFSYAL 421
+ + G +A +K + +K YL + L E
Sbjct: 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFF 326
Score = 29.0 bits (65), Expect = 3.6
Identities = 21/124 (16%), Positives = 35/124 (28%), Gaps = 25/124 (20%)
Query: 325 SAEIAK--EKGNQAYKDKQWLKAISFYTEA------IKLNGNNATYYS------NRAAAY 370
S+ I + + + A E ++ + + YYS N Y
Sbjct: 9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEY 68
Query: 371 LESGSFLQAEADCTKAINLDKKNVKA-----------YLRRGTAREMLGYYKEAIEDFSY 419
LE ++ E + L + + K RG Y AI+ F
Sbjct: 69 LEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKK 128
Query: 420 ALVL 423
A
Sbjct: 129 AESK 132
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 43.7 bits (103), Expect = 9e-05
Identities = 18/138 (13%), Positives = 45/138 (32%), Gaps = 13/138 (9%)
Query: 297 QNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 356
Y + ++ + +G + K++++AI +Y EA K
Sbjct: 72 GKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKEL 131
Query: 357 GNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VKAYLRRGTA 403
A ++ A AY + +A+++ + + +++
Sbjct: 132 PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191
Query: 404 REMLGYYKEAIEDFSYAL 421
+ +Y +A+ AL
Sbjct: 192 YDDFKHYDKALPHLEAAL 209
Score = 41.3 bits (97), Expect = 4e-04
Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 13/128 (10%)
Query: 314 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNR 366
K + + AE + Y KQ ++ +A+ + +
Sbjct: 129 KELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188
Query: 367 AAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIEDFSYA 420
A Y + + +A A+ L + L + + G + A+E F A
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248
Query: 421 LVLEPTNK 428
+
Sbjct: 249 AKVSREKV 256
Score = 34.8 bits (80), Expect = 0.047
Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 19/118 (16%)
Query: 323 KQSAEIAKEK------------GNQAYKDKQWLKAISFYTEAIKL-NGNNATYYSNRAAA 369
+++A++++EK K Q KA F E + + +Y
Sbjct: 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF 305
Query: 370 YLESGSFLQAEADCTKAIN-LDKKNVKAYLRR-----GTAREMLGYYKEAIEDFSYAL 421
E ++ +KKN+ AY+ E ++++A + L
Sbjct: 306 LQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363
Score = 34.8 bits (80), Expect = 0.053
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 16/85 (18%)
Query: 323 KQSAEIAKEKGNQAYKD---------------KQWLKAISFYTEAIKLNGNNATYYSNRA 367
++ + + ++ YK+ ++ +S++ E L+ + A
Sbjct: 285 EEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF-EKKNLHAYIEACARSAA 343
Query: 368 AAYLESGSFLQAEADCTKAINLDKK 392
A + S F QA A K + +
Sbjct: 344 AVFESSCHFEQAAAFYRKVLKAQED 368
Score = 34.4 bits (79), Expect = 0.062
Identities = 18/122 (14%), Positives = 33/122 (27%), Gaps = 23/122 (18%)
Query: 325 SAEIAK--EKGNQAYKDKQWLKAISFYTEA------IKLNGNNATYYSNRAAAY------ 370
S+ + + + + A E ++ + + YYS +
Sbjct: 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDY 68
Query: 371 LESGSFLQAEADCTKAINLDKKNVK---------AYLRRGTAREMLGYYKEAIEDFSYAL 421
LE G T+ + + K + RG Y EAI + A
Sbjct: 69 LEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAE 128
Query: 422 VL 423
Sbjct: 129 KE 130
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 43.4 bits (103), Expect = 1e-04
Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 23/125 (18%)
Query: 322 QKQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLNGNN----ATYYS 364
+++ + ++F+ AI+ + + YS
Sbjct: 31 HDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYS 90
Query: 365 NRAAAYLESGSFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIEDFS 418
AY G + +A + L D+ K+ G +++G + EA
Sbjct: 91 QLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCE 150
Query: 419 YALVL 423
L L
Sbjct: 151 RHLTL 155
Score = 39.6 bits (93), Expect = 0.002
Identities = 18/126 (14%), Positives = 47/126 (37%), Gaps = 25/126 (19%)
Query: 323 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN---ATYY 363
+++ ++ ++ G++ Y + AI + E +++ G+
Sbjct: 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRAN 266
Query: 364 SNRAAAYLESGSFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIEDF 417
SN +++ G F A + + L +++ ++ G +L + AIE
Sbjct: 267 SNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326
Query: 418 SYALVL 423
+ L +
Sbjct: 327 NRHLAI 332
Score = 37.3 bits (87), Expect = 0.008
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 12/115 (10%)
Query: 321 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---GNN---ATYYSNRAAAYLESG 374
+ + + +A+ FY E +KL G+ N Y G
Sbjct: 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG 237
Query: 375 SFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIEDFSYALVL 423
F A + + + D+ +A G + LG +++A E + L L
Sbjct: 238 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292
Score = 33.4 bits (77), Expect = 0.15
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 19/111 (17%)
Query: 336 AYKDK-QWLKAISFYTEAIKLN---GNN---ATYYSNRAAAYLESGSFLQAEADCTKAIN 388
AY + KA+ ++ + L + A N G F +A C + +
Sbjct: 95 AYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT 154
Query: 389 LDKKNVKAYLRRGTAR---------EMLGYYKEAIEDFSYALVLEPTNKRA 430
L + + R R G + + ++ RA
Sbjct: 155 LAR---QLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202
Score = 31.1 bits (71), Expect = 0.72
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 19/86 (22%)
Query: 323 KQSAEIAKEKGNQ------------AYKD-KQWLKAISFYTEAIKLN---GNN---ATYY 363
K++ +A E G + Y ++ AI ++ + + G+ A
Sbjct: 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARAC 346
Query: 364 SNRAAAYLESGSFLQAEADCTKAINL 389
+ A+ G +A + + L
Sbjct: 347 WSLGNAHSAIGGHERALKYAEQHLQL 372
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 40.1 bits (93), Expect = 8e-04
Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 14/124 (11%)
Query: 314 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNR 366
+ Q+ I N ++ K I + + +K + N
Sbjct: 143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202
Query: 367 AAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIED-FSY 419
A A + ++ KAI + + + Y +RG L Y + IED +
Sbjct: 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262
Query: 420 ALVL 423
A
Sbjct: 263 ASFF 266
Score = 29.7 bits (66), Expect = 1.6
Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 12/138 (8%)
Query: 292 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKD--KQWLKAISFY 349
L + + ++ S + + Q + K+K + + LK ++
Sbjct: 49 LQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH 108
Query: 350 TEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTA 403
E + + AA L+ + + K +N +
Sbjct: 109 PEFQQFL----QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI 164
Query: 404 REMLGYYKEAIEDFSYAL 421
GY K+ I+ F L
Sbjct: 165 YAENGYLKKGIDLFEQIL 182
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 39.2 bits (91), Expect = 0.002
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 13/130 (10%)
Query: 324 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFL 377
++A++ + K+ A + +A Y + G+ +
Sbjct: 35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94
Query: 378 QAEADCTKAINLDKKN------VKAYLRRGTAREM-LGYYKEAIEDFSYALVLEPTNKRA 430
A AI + G E L Y +AI+ + A ++
Sbjct: 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154
Query: 431 SLSADRLRKV 440
+LS K
Sbjct: 155 ALSNKCFIKC 164
Score = 32.7 bits (74), Expect = 0.20
Identities = 16/134 (11%), Positives = 40/134 (29%), Gaps = 13/134 (9%)
Query: 314 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRA 367
N+ ++ E + A+ AI++ + A +
Sbjct: 65 DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124
Query: 368 AAYL-ESGSFLQAEADCTKAINLDKK------NVKAYLRRGTAREMLGYYKEAIEDFSYA 420
+ + +A A + + K +++ + + G Y EA + +S
Sbjct: 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL 184
Query: 421 LVLEPTNKRASLSA 434
+ N+ + S
Sbjct: 185 IKSSMGNRLSQWSL 198
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 37.5 bits (88), Expect = 0.003
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 25/124 (20%)
Query: 323 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN---ATYY 363
+Q IAKE G++ AY ++ A +Y + + L + A
Sbjct: 33 EQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 92
Query: 364 SNRAAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIEDF 417
+ Y + +A K + + ++ +A G A LG + +A+
Sbjct: 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 152
Query: 418 SYAL 421
L
Sbjct: 153 EKHL 156
Score = 35.2 bits (82), Expect = 0.014
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 13/101 (12%)
Query: 336 AYKDK-QWLKAISFYTEAIKLN---GNN---ATYYSNRAAAYLESGSFLQAEADCTKAIN 388
+ + A+ + + + + G+ YSN AY+ G F A K +
Sbjct: 18 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77
Query: 389 L-----DKKNV-KAYLRRGTAREMLGYYKEAIEDFSYALVL 423
L D+ ++ G +L Y++AI+ L +
Sbjct: 78 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118
Score = 28.3 bits (64), Expect = 3.7
Identities = 12/89 (13%), Positives = 32/89 (35%), Gaps = 19/89 (21%)
Query: 323 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN---ATYY 363
K++ +A++ ++ Y + KAI ++ + + + +
Sbjct: 73 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 132
Query: 364 SNRAAAYLESGSFLQAEADCTKAINLDKK 392
+ AY G+ QA K + + ++
Sbjct: 133 WSLGNAYTALGNHDQAMHFAEKHLEISRE 161
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 34.6 bits (79), Expect = 0.030
Identities = 12/105 (11%), Positives = 28/105 (26%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 385
E ++ ++ + + +A++ + +A LE+ F A+
Sbjct: 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLAT 65
Query: 386 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ N L ++ L P N
Sbjct: 66 IPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFEL 110
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 34.8 bits (81), Expect = 0.045
Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 18/104 (17%)
Query: 336 AYKDK-QWLKAISFYTEAIKLN----GNN----ATYYSNRAAAYLESGSFLQAEADCTKA 386
+++ ++ + +Y A+++ G + A +N A+ YL+ G F QAE +
Sbjct: 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221
Query: 387 INLDKKNV---------KAYLRRGTAREMLGYYKEAIEDFSYAL 421
+ + ++ E G K+ Y
Sbjct: 222 LTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265
Score = 29.8 bits (68), Expect = 1.8
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 17/104 (16%)
Query: 336 AYKDK-QWLKAISFYTEAIKLN----GNN----ATYYSNRAAAYLESGSFLQAEADCTKA 386
Y + ++ +A A+++ G + A +N A G + + E +A
Sbjct: 120 LYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179
Query: 387 INLDKK-------NV-KAYLRRGTAREMLGYYKEAIEDFSYALV 422
+ + + NV K + G +K+A + L
Sbjct: 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223
Score = 28.7 bits (65), Expect = 3.7
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 17/97 (17%)
Query: 336 AYKDK-QWLKAISFYTEAIKLN----GNN----ATYYSNRAAAYLESGSFLQAEADCTKA 386
Y + ++ A+ +A++ G++ AT + A Y + + A A
Sbjct: 36 QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA 95
Query: 387 INLDKKNV--------KAYLRRGTAREMLGYYKEAIE 415
+ + +K + G YKEA
Sbjct: 96 LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEP 132
Score = 28.7 bits (65), Expect = 4.2
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 17/97 (17%)
Query: 336 AYKDK-QWLKAISFYTEAIKLN----GNN----ATYYSNRAAAYLESGSFLQAEADCTKA 386
Y+D+ ++ A + +A+ + G + A +N A Y + G + +AE C +A
Sbjct: 78 VYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 137
Query: 387 INLDKKN--------VKAYLRRGTAREMLGYYKEAIE 415
+ + +K K + G Y+E
Sbjct: 138 LEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY 174
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 34.0 bits (79), Expect = 0.073
Identities = 13/104 (12%), Positives = 35/104 (33%), Gaps = 18/104 (17%)
Query: 336 AYKDK-QWLKAISFYTEAIKLN----GNN----ATYYSNRAAAYLESGSFLQAEADCTKA 386
+++ + + +Y A+++ G + A +N A+ YL+ G + AE +
Sbjct: 136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195
Query: 387 INLDKKNV---------KAYLRRGTAREMLGYYKEAIEDFSYAL 421
+ + ++ E +++ Y
Sbjct: 196 LTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239
Score = 29.4 bits (67), Expect = 2.0
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 17/97 (17%)
Query: 336 AYKDK-QWLKAISFYTEAI----KLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKA 386
Y+D+ ++ +A +A+ K G + A +N A Y + G + +AE C +A
Sbjct: 52 VYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 111
Query: 387 INLDKKNV--------KAYLRRGTAREMLGYYKEAIE 415
+ + +K + K + G +E
Sbjct: 112 LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148
Score = 29.4 bits (67), Expect = 2.4
Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 17/97 (17%)
Query: 336 AYKDK-QWLKAISFYTEAIKLN----GNN----ATYYSNRAAAYLESGSFLQAEADCTKA 386
Y + ++ +A A+++ G A +N A G + E +A
Sbjct: 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153
Query: 387 INLDKK-------NV-KAYLRRGTAREMLGYYKEAIE 415
+ + NV K + G Y++A
Sbjct: 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET 190
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase,
ATP-binding, microtubule INT and trafficking domain,
nucleotide-binding; HET: SRT; 2.40A {Sulfolobus
solfataricus} PDB: 2v6y_B*
Length = 83
Score = 30.8 bits (69), Expect = 0.17
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%)
Query: 366 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 425
A LE A A+ DK G + + YYK+AIE S +VL P
Sbjct: 2 SAQVMLED----MARKYAILAVKADK--------EGKVEDAITYYKKAIEVLSQIIVLYP 49
Query: 426 TNKRASLSADRLRK 439
+ + + +
Sbjct: 50 ESVARTAYEQMINE 63
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex,
nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis,
ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Length = 83
Score = 30.4 bits (68), Expect = 0.19
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 385 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 439
A+ DK+ G A E + YK+AIE + + L A++ + +
Sbjct: 25 NAVKADKE--------GNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINE 71
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4
carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum}
SCOP: c.6.2.3
Length = 254
Score = 31.6 bits (72), Expect = 0.37
Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 13/76 (17%)
Query: 35 AFCGILG-----FRPSYGAVSH--------MGIIPISTSLDTVGWFARDPKILRHVGHVL 81
A I G R Y + +G I T+LDT + P+
Sbjct: 129 ATRRIDGFAPKYMRAPYLSCDAGCQGDLGGLGYHIIDTNLDTKDYENNKPETTHLSAEKF 188
Query: 82 LQLPFAAQRSPRQIII 97
A + I++
Sbjct: 189 NNELSADVGANSYIVL 204
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 30.7 bits (69), Expect = 0.92
Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 18/109 (16%)
Query: 326 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY-----YSNRAAAYLESGSFLQAE 380
A++A GN +A A++ Y S G ++
Sbjct: 21 AQVAINDGNPD-------EAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL 73
Query: 381 ADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIEDFSYALVL 423
A + + +++ + + +++ G+ + A E A L
Sbjct: 74 ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.94
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 301 ASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLK 344
AS + + K+K +NQ+QS ++ K K N DK + +
Sbjct: 104 ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2,
protein structure initiative; 2.15A {Vibrio
parahaemolyticus rimd 2210633}
Length = 93
Score = 28.7 bits (64), Expect = 1.1
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 356 NGNNATYYSNRA-AAYLESGSFL--QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE 412
N AT + +A Y + + +A+ L+ N A + ++E
Sbjct: 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQE 61
Query: 413 AIEDFSYALVLEPTN-KRASL 432
AI+ + L N R ++
Sbjct: 62 AIDTWVLLLDSNDPNLDRVTI 82
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 30.3 bits (67), Expect = 1.4
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 341 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI 387
Q +A S+Y A +L +N Y+ A G L ++I
Sbjct: 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213
>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 4dbl_A 1l7v_A*
Length = 326
Score = 29.9 bits (68), Expect = 1.4
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 2 PG--GSSSGAAVAVAADLVDFSLGIDTVGGVRVP-SAFCGILG 41
PG G S+GA V + A ++ LG + + SA G L
Sbjct: 88 PGLLGVSNGAGVGLIAAVL---LGQGQLPNWALGLSAIAGALI 127
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.7.14.1
Length = 117
Score = 27.7 bits (61), Expect = 3.8
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 373 SGSFLQ-AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+ LQ A +KA DK G E L Y+ A++ F + + E +A
Sbjct: 11 TSPNLQKAIDLASKAAQEDKA--------GNYEEALQLYQHAVQYFLHVVKYEAQGDKA 61
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 4.7
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 121 EKLFGRQVLKHEN-LGEYFDSKVPSL 145
EK + + K + L Y D P+L
Sbjct: 18 EK---QALKKLQASLKLYADDSAPAL 40
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum,
metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB:
1tjc_A
Length = 104
Score = 26.9 bits (59), Expect = 6.3
Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 27/98 (27%)
Query: 333 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 392
G AY + + + +A++ L T +DK
Sbjct: 12 GKVAYTEADYYHTELWMEQALRQ---------------------LDEGEIST----IDKV 46
Query: 393 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 430
+V YL A G +A+ L L+P ++RA
Sbjct: 47 SVLDYL--SYAVYQQGDLDKALLLTKKLLELDPEHQRA 82
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 27.3 bits (60), Expect = 9.9
Identities = 30/171 (17%), Positives = 47/171 (27%), Gaps = 51/171 (29%)
Query: 62 DTVGWF---ARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRV---VQV 115
DT G F + + + + SP + LL +P R
Sbjct: 84 DTPGIFDTEVPNAETSKEIIR------CILLTSPGPHAL------LLVVPLGRYTEEEHK 131
Query: 116 VIKSTEKLFGRQVLKH-------------ENLGEYFDSKVPSLKGFHKTNGELKNVMRLI 162
+ K+FG + NL +Y ++ G
Sbjct: 132 ATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG--------- 182
Query: 163 QRYEFKNNHNEWIESVKPALDPDISAEIGEMLE-ISETVIENCKS-IRNEM 211
RY NN A + A+ ++L I V EN + N M
Sbjct: 183 DRYCALNNK---------ATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRM 224
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.383
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,748,464
Number of extensions: 411198
Number of successful extensions: 1693
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1368
Number of HSP's successfully gapped: 379
Length of query: 442
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 345
Effective length of database: 3,993,456
Effective search space: 1377742320
Effective search space used: 1377742320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)