BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013460
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 35/212 (16%)
Query: 40 DSSDVQALQVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEGSAVVSIDISGLGLSGTM 99
+ D QAL + L +P+ L++W D C +W GV C+ + T
Sbjct: 4 NPQDKQALLQIKKDLGNPTTLSSWLPTT-DCCNRTWLGVLCD--------------TDTQ 48
Query: 100 GYLLSDLLSLRKFDLSGNSIHDTIPYQLP---PNLTSLNL----ASNNFSGNLPYSIASM 152
Y +++L DLSG ++ PY +P NL LN NN G +P +IA +
Sbjct: 49 TYRVNNL------DLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100
Query: 153 VSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDXXXXXXXXXXXXXXXXXXXQ 212
L YL ++ +++ +I D + L TLD S+N SG +
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 213 VTGSL----NVFSGLPLTTLNVANNHFSGWIP 240
++G++ FS L T++ ++ N +G IP
Sbjct: 161 ISGAIPDSYGSFSKL-FTSMTISRNRLTGKIP 191
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 85 VVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQ---LPPNLTSLNLASNNF 141
+V++D S LSGT+ +S L +L GN I IP TS+ ++ N
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 142 SGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGD 192
+G +P + A++ +L+++++SRN L +FG+ + L+ N+ + D
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 88 IDISGLGLSGTMGYLLSDLLSLRKFDLSGNSI-HDTIPYQLPPNLTSLNLASNNFSGNLP 146
+D+S L G L + +K L+ NS+ D L NL L+L +N G LP
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261
Query: 147 YSIASMVSLSYLNVSRNSLTQSI 169
+ + L LNVS N+L I
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEI 284
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNN 140
S +VS+ +S LSGT+ L L LR L N + IP +L L +L L N+
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 141 FSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGD 192
+G +P +++ +L+++++S N LT I G L LA L LS N+FSG+
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 99/210 (47%), Gaps = 17/210 (8%)
Query: 43 DVQALQVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEGSAVVSIDIS----GLGLSGT 98
++ L L ++L +W N+ +PC ++ GV C V SID+S +G S
Sbjct: 10 EIHQLISFKDVLPDKNLLPDWSSNK-NPC--TFDGVTCRDDKVTSIDLSSKPLNVGFSAV 66
Query: 99 MGYLLSDLLSLRKFDLSGNSIHDTIP-YQLPPNLTSLNLASNNFSGNLP--YSIASMVSL 155
LLS F LS + I+ ++ ++ +LTSL+L+ N+ SG + S+ S L
Sbjct: 67 SSSLLSLTGLESLF-LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 125
Query: 156 SYLNVSRNSLTQSIGDIFGNLA--GLATLDLSFNNFSGDXX---XXXXXXXXXXXXXXXX 210
+LNVS N+L G + G L L LDLS N+ SG
Sbjct: 126 KFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 184
Query: 211 XQVTGSLNVFSGLPLTTLNVANNHFSGWIP 240
+++G ++V + L L+V++N+FS IP
Sbjct: 185 NKISGDVDVSRCVNLEFLDVSSNNFSTGIP 214
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 23/116 (19%)
Query: 134 LNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDX 193
L+++ N SG +P I SM L LN+ N ++ SI D G+L GL LDLS N G
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG-- 691
Query: 194 XXXXXXXXXXXXXXXXXXQVTGSLNVFSGLPLTTLNVANNHFSGWIPRELISIRTF 249
Q +L + LT ++++NN+ SG IP E+ TF
Sbjct: 692 ---------------RIPQAMSALTM-----LTEIDLSNNNLSGPIP-EMGQFETF 726
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 26/136 (19%)
Query: 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFS 142
SA+ +DISG LSG +S L+ ++S N IP +L L+LA N F+
Sbjct: 220 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFT 279
Query: 143 GNLPYSIASMV-SLSYLNVSRNSLTQSIGDIFG-------------------------NL 176
G +P ++ +L+ L++S N ++ FG +
Sbjct: 280 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 339
Query: 177 AGLATLDLSFNNFSGD 192
GL LDLSFN FSG+
Sbjct: 340 RGLKVLDLSFNEFSGE 355
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 9/159 (5%)
Query: 88 IDISGLGLSG--TMGYLLSDLL-SLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGN 144
+D+S +SG +G++LSD L+ +SGN I + NL L+++SNNFS
Sbjct: 153 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTG 212
Query: 145 LPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDXXXXXXXXXXXX 204
+P+ + +L +L++S N L+ L L++S N F G
Sbjct: 213 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQ 269
Query: 205 XXXXXXXQVTGSLNVF-SGL--PLTTLNVANNHFSGWIP 240
+ TG + F SG LT L+++ NHF G +P
Sbjct: 270 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 108 SLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSL 165
S+ D+S N + IP ++ P L LNL N+ SG++P + + L+ L++S N L
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 166 TQSIGDIFGNLAGLATLDLSFNNFSG 191
I L L +DLS NN SG
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSG 715
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 31/195 (15%)
Query: 88 IDISGLGLSGTMGYLLSDL-LSLRKFDLSGNSIHDTIPYQLPPN----LTSLNLASNNFS 142
+D+S SG + L++L SL DLS N+ I L N L L L +N F+
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 143 GNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAG------------------------ 178
G +P ++++ L L++S N L+ +I G+L+
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 179 LATLDLSFNNFSGDXXXXXXXXXXXXXXXXXXXQVTGSLNVFSGL--PLTTLNVANNHFS 236
L TL L FN+ +G+ ++TG + + G L L ++NN FS
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 237 GWIPRELISIRTFIY 251
G IP EL R+ I+
Sbjct: 525 GNIPAELGDCRSLIW 539
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 95 LSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASM 152
L+G + LS+ +L LS N + IP + NL L L++N+FSGN+P +
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 153 VSLSYLNVSRNSLTQSI 169
SL +L+++ N +I
Sbjct: 535 RSLIWLDLNTNLFNGTI 551
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 84 AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPP--NLTSLNLASNNF 141
+++ +D+S LSG + + + L +L N I +IP ++ L L+L+SN
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 142 SGNLPYSIASMVSLSYLNVSRNSLTQSIGDI 172
G +P +++++ L+ +++S N+L+ I ++
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNN 140
S +VS+ +S LSGT+ L L LR L N + IP +L L +L L N+
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 141 FSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGD 192
+G +P +++ +L+++++S N LT I G L LA L LS N+FSG+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 99/210 (47%), Gaps = 17/210 (8%)
Query: 43 DVQALQVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEGSAVVSIDIS----GLGLSGT 98
++ L L ++L +W N+ +PC ++ GV C V SID+S +G S
Sbjct: 13 EIHQLISFKDVLPDKNLLPDWSSNK-NPC--TFDGVTCRDDKVTSIDLSSKPLNVGFSAV 69
Query: 99 MGYLLSDLLSLRKFDLSGNSIHDTIP-YQLPPNLTSLNLASNNFSGNLP--YSIASMVSL 155
LLS F LS + I+ ++ ++ +LTSL+L+ N+ SG + S+ S L
Sbjct: 70 SSSLLSLTGLESLF-LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128
Query: 156 SYLNVSRNSLTQSIGDIFGNLA--GLATLDLSFNNFSGDXX---XXXXXXXXXXXXXXXX 210
+LNVS N+L G + G L L LDLS N+ SG
Sbjct: 129 KFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187
Query: 211 XQVTGSLNVFSGLPLTTLNVANNHFSGWIP 240
+++G ++V + L L+V++N+FS IP
Sbjct: 188 NKISGDVDVSRCVNLEFLDVSSNNFSTGIP 217
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 23/116 (19%)
Query: 134 LNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDX 193
L+++ N SG +P I SM L LN+ N ++ SI D G+L GL LDLS N G
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG-- 694
Query: 194 XXXXXXXXXXXXXXXXXXQVTGSLNVFSGLPLTTLNVANNHFSGWIPRELISIRTF 249
Q +L + LT ++++NN+ SG IP E+ TF
Sbjct: 695 ---------------RIPQAMSALTM-----LTEIDLSNNNLSGPIP-EMGQFETF 729
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 26/136 (19%)
Query: 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFS 142
SA+ +DISG LSG +S L+ ++S N IP +L L+LA N F+
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFT 282
Query: 143 GNLPYSIASMV-SLSYLNVSRNSLTQSIGDIFG-------------------------NL 176
G +P ++ +L+ L++S N ++ FG +
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 177 AGLATLDLSFNNFSGD 192
GL LDLSFN FSG+
Sbjct: 343 RGLKVLDLSFNEFSGE 358
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 9/159 (5%)
Query: 88 IDISGLGLSG--TMGYLLSDLL-SLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGN 144
+D+S +SG +G++LSD L+ +SGN I + NL L+++SNNFS
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTG 215
Query: 145 LPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDXXXXXXXXXXXX 204
+P+ + +L +L++S N L+ L L++S N F G
Sbjct: 216 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQ 272
Query: 205 XXXXXXXQVTGSLNVF-SGL--PLTTLNVANNHFSGWIP 240
+ TG + F SG LT L+++ NHF G +P
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 108 SLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSL 165
S+ D+S N + IP ++ P L LNL N+ SG++P + + L+ L++S N L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 166 TQSIGDIFGNLAGLATLDLSFNNFSG 191
I L L +DLS NN SG
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSG 718
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 31/195 (15%)
Query: 88 IDISGLGLSGTMGYLLSDL-LSLRKFDLSGNSIHDTIPYQLPPN----LTSLNLASNNFS 142
+D+S SG + L++L SL DLS N+ I L N L L L +N F+
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 143 GNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAG------------------------ 178
G +P ++++ L L++S N L+ +I G+L+
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 179 LATLDLSFNNFSGDXXXXXXXXXXXXXXXXXXXQVTGSLNVFSGL--PLTTLNVANNHFS 236
L TL L FN+ +G+ ++TG + + G L L ++NN FS
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 237 GWIPRELISIRTFIY 251
G IP EL R+ I+
Sbjct: 528 GNIPAELGDCRSLIW 542
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 95 LSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASM 152
L+G + LS+ +L LS N + IP + NL L L++N+FSGN+P +
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 153 VSLSYLNVSRNSLTQSI 169
SL +L+++ N +I
Sbjct: 538 RSLIWLDLNTNLFNGTI 554
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 84 AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPP--NLTSLNLASNNF 141
+++ +D+S LSG + + + L +L N I +IP ++ L L+L+SN
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 142 SGNLPYSIASMVSLSYLNVSRNSLTQSIGDI 172
G +P +++++ L+ +++S N+L+ I ++
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 108 SLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQ 167
SL ++S N + DTI LPP + L+L SN +P + + +L LNV+ N L
Sbjct: 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS 458
Query: 168 SIGDIFGNLAGLATLDLSFN 187
IF L L + L N
Sbjct: 459 VPDGIFDRLTSLQKIWLHTN 478
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 394 PITATSYTVASLQTATNSFSQEFLIGEGSLGRVYRAEFANGKVIYCVRN 442
P + + L+ ATN+F +FLIG G G+VY+ +G + R
Sbjct: 23 PFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRR 71
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 394 PITATSYTVASLQTATNSFSQEFLIGEGSLGRVYRAEFANGKVIYCVRN 442
P + + L+ ATN+F +FLIG G G+VY+ +G + R
Sbjct: 23 PFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRR 71
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 400 YTVASLQTATNSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441
+++ LQ A+++FS + ++G G G+VY+ A+G ++ R
Sbjct: 28 FSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKR 69
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 110 RKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSI 169
++ D G S+ D++P +P + L+L S + + + L++LN+ N L
Sbjct: 17 KEVDCQGKSL-DSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 170 GDIFGNLAGLATLDLSFNNFS 190
+F +L L TL L+ N +
Sbjct: 76 AGVFDDLTELGTLGLANNQLA 96
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 110 RKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSI 169
++ D G S+ D++P +P + L+L S + + + L++LN+ N L
Sbjct: 17 KEVDCQGKSL-DSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 170 GDIFGNLAGLATLDLSFNNFS 190
+F +L L TL L+ N +
Sbjct: 76 AGVFDDLTELGTLGLANNQLA 96
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 103 LSDLLSLRKFDLSGNSIHDTIP---YQLPPNLTSLNLASNNFSGNLPYSI-ASMVSLSYL 158
L +L +L L+GN + ++P + NL L L N LP + + +L+YL
Sbjct: 81 LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYL 138
Query: 159 NVSRNSLTQSIGDIFGNLAGLATLDLSFNNFS 190
N++ N L +F L L LDLS+N
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 398 TSYTVASLQTATNSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441
+++ LQ A+++F + ++G G G+VY+ A+G ++ R
Sbjct: 18 KRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKR 61
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 89 DISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP----PNLTSLNLASNNFSGN 144
++S + L+G L D+ + F SI Q P P L SL L N G+
Sbjct: 281 NVSAMSLAGVSIKYLEDVP--KHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMN--KGS 336
Query: 145 LPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLA--GLATLDLSFN 187
+ + ++ SLSYL++SRN+L+ S + +L L LDLSFN
Sbjct: 337 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 381
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 89 DISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP----PNLTSLNLASNNFSGN 144
++S + L+G L D+ + F SI Q P P L SL L N G+
Sbjct: 286 NVSAMSLAGVSIKYLEDVP--KHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMN--KGS 341
Query: 145 LPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLA--GLATLDLSFN 187
+ + ++ SLSYL++SRN+L+ S + +L L LDLSFN
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 123 IPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATL 182
+P +P N LNL NN + + L L + RNS+ Q F LA L TL
Sbjct: 69 VPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128
Query: 183 DLSFNNF 189
+L F+N+
Sbjct: 129 EL-FDNW 134
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGN---SIHDTIPYQLPPNLTSLNLAS 138
G + S+ I+ L+ + L+ LR +LS N +I ++ ++L L + L
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL-RLQEIQLVG 281
Query: 139 NNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGD 192
+ PY+ + L LNVS N LT +F ++ L TL L N + D
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 101 YLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSL---NLASNNFSGNLPYSI-ASMVSLS 156
Y L L L +L N D IP ++ +L L +L NN + LP S+ + VSL
Sbjct: 530 YFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLK 587
Query: 157 YLNVSRNSLTQSIGDIFG-NLAGLATLDLSFNNF 189
LN+ +N +T +FG L LD+ FN F
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 108 SLRKFDLSGNSIHDTIPY--QLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSL 165
L D+ N+I P Q P L LNL N S + A +L+ L++ NS+
Sbjct: 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109
Query: 166 TQSIGDIFGNLAGLATLDLSFNNFSG 191
+ + F L TLDLS N S
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSS 135
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 101 YLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSL---NLASNNFSGNLPYSI-ASMVSLS 156
Y L L L +L N D IP ++ +L L +L NN + LP S+ + VSL
Sbjct: 540 YFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLK 597
Query: 157 YLNVSRNSLTQSIGDIFG-NLAGLATLDLSFNNF 189
LN+ +N +T +FG L LD+ FN F
Sbjct: 598 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 631
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 24/123 (19%)
Query: 66 NEGDPCGESWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPY 125
N DP ++KG+ E S V + D+S + + + S L + L+ N I+
Sbjct: 260 NFKDPDNFTFKGL--EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN----- 312
Query: 126 QLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLS 185
+ N F G + L LN+S+N L +F NL L LDLS
Sbjct: 313 ---------KIDDNAFWG--------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355
Query: 186 FNN 188
+N+
Sbjct: 356 YNH 358
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 101 YLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSL---NLASNNFSGNLPYSI-ASMVSLS 156
Y L L L +L N D IP ++ +L L +L NN + LP S+ + VSL
Sbjct: 535 YFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLK 592
Query: 157 YLNVSRNSLTQSIGDIFG-NLAGLATLDLSFNNF 189
LN+ +N +T +FG L LD+ FN F
Sbjct: 593 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 626
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 123 IPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATL 182
+P +P ++T L L N F+ +P +++ L+ +++S N ++ F N+ L TL
Sbjct: 25 LPKGIPRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83
Query: 183 DLSFNNF 189
LS+N
Sbjct: 84 ILSYNRL 90
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 122 TIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLAT 181
TIP LPP+LT L+L N + S+ + +L+ L +S NS++ N L
Sbjct: 185 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244
Query: 182 LDLSFNNF 189
L L+ N
Sbjct: 245 LHLNNNKL 252
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 122 TIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLAT 181
TIP LPP+LT L+L N + S+ + +L+ L +S NS++ N L
Sbjct: 185 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244
Query: 182 LDLSFNNF 189
L L+ N
Sbjct: 245 LHLNNNKL 252
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 122 TIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLAT 181
++P +P L+L N + P S+ L+YLN++ N LT +F L L
Sbjct: 33 SVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTH 92
Query: 182 LDLSFNNF 189
L L N
Sbjct: 93 LALHINQL 100
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 120 HDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGL 179
H ++P +P N L L N + P S+++L L + N L +F +L L
Sbjct: 31 HASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90
Query: 180 ATLDLSFNNFS 190
LDL N +
Sbjct: 91 TVLDLGTNQLT 101
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 108 SLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQ 167
S+ +LS N + ++ LPP + L+L NN ++P + + +L LNV+ N L
Sbjct: 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLKS 487
Query: 168 SIGDIFGNLAGLATLDLSFN 187
+F L L + L N
Sbjct: 488 VPDGVFDRLTSLQYIWLHDN 507
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
Query: 85 VVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPP------NLTSLNLAS 138
++ +DIS + + L SL ++GNS + LP NLT L+L+
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQ 479
Query: 139 NNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFN 187
P + S+ SL LN++ N L IF L L + L N
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 122 TIPYQLPPNLTSLNLASNNFSGNLPYSI-ASMVSLSYLNVSRNSLTQSIGD-IFGNLAGL 179
++P +P + T L L SN +LP+ + + L+ L++S+N + QS+ D +F L L
Sbjct: 21 SVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKL 78
Query: 180 ATLDLSFNNF 189
L L N
Sbjct: 79 TILYLHENKL 88
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 32/122 (26%)
Query: 89 DISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYS 148
DI+ LG+ L +L + L+GN + D NLT L+LA+N S P S
Sbjct: 208 DITPLGI----------LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 257
Query: 149 --------------------IASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNN 188
+A + +L+ L ++ N L + I I NL L L L FNN
Sbjct: 258 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQL-EDISPI-SNLKNLTYLTLYFNN 315
Query: 189 FS 190
S
Sbjct: 316 IS 317
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 32/122 (26%)
Query: 89 DISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYS 148
DI+ LG+ L +L + L+GN + D NLT L+LA+N S P S
Sbjct: 209 DITPLGI----------LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 258
Query: 149 --------------------IASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNN 188
+A + +L+ L ++ N L + I I NL L L L FNN
Sbjct: 259 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQL-EDISPI-SNLKNLTYLTLYFNN 316
Query: 189 FS 190
S
Sbjct: 317 IS 318
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 32/122 (26%)
Query: 89 DISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYS 148
DI+ LG+ L +L + L+GN + D NLT L+LA+N S P S
Sbjct: 208 DITPLGI----------LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 257
Query: 149 --------------------IASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNN 188
+A + +L+ L ++ N L + I I NL L L L FNN
Sbjct: 258 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQL-EDISPI-SNLKNLTYLTLYFNN 315
Query: 189 FS 190
S
Sbjct: 316 IS 317
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 32/122 (26%)
Query: 89 DISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYS 148
DI+ LG+ L +L + L+GN + D NLT L+LA+N S P S
Sbjct: 209 DITPLGI----------LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 258
Query: 149 --------------------IASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNN 188
+A + +L+ L ++ N L + I I NL L L L FNN
Sbjct: 259 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQL-EDISPI-SNLKNLTYLTLYFNN 316
Query: 189 FS 190
S
Sbjct: 317 IS 318
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 108 SLRKFDLSGNSIHDTI--PYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSL 165
+L + DLS N++HD + P+L L+L NN P S + +L YL++ R
Sbjct: 249 NLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFT 308
Query: 166 TQSIG 170
QS+
Sbjct: 309 KQSVS 313
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%)
Query: 123 IPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATL 182
IP LP N+T LNL N P + L+ L+ NS+++ ++ L L L
Sbjct: 19 IPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVL 78
Query: 183 DLSFNNFS 190
+L N S
Sbjct: 79 NLQHNELS 86
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 32/122 (26%)
Query: 89 DISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYS 148
DI+ LG+ L +L + L+GN + D NLT L+LA+N S P S
Sbjct: 212 DITPLGI----------LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 261
Query: 149 --------------------IASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNN 188
+A + +L+ L ++ N L + I I NL L L L FNN
Sbjct: 262 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQL-EDISPI-SNLKNLTYLTLYFNN 319
Query: 189 FS 190
S
Sbjct: 320 IS 321
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 32/122 (26%)
Query: 89 DISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYS 148
DI+ LG+ L +L + L+GN + D NLT L+LA+N S P S
Sbjct: 213 DITPLGI----------LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 262
Query: 149 --------------------IASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNN 188
+A + +L+ L ++ N L + I I NL L L L FNN
Sbjct: 263 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQL-EDISPI-SNLKNLTYLTLYFNN 320
Query: 189 FS 190
S
Sbjct: 321 IS 322
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 32/122 (26%)
Query: 89 DISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYS 148
DI+ LG+ L +L + L+GN + D NLT L+LA+N S P S
Sbjct: 209 DITPLGI----------LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 258
Query: 149 --------------------IASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNN 188
+A + +L+ L ++ N L + I I NL L L L FNN
Sbjct: 259 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQL-EDISPI-SNLKNLTYLTLYFNN 316
Query: 189 FS 190
S
Sbjct: 317 IS 318
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 121 DTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLA 180
++IP L + SL+L++N + + V+L L ++ N + D F +L L
Sbjct: 44 NSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 181 TLDLSFNNFS 190
LDLS+N S
Sbjct: 104 HLDLSYNYLS 113
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 106 LLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSL 165
L +L +LS N I D P Q PN+T L L N + P +A++ +L +L + N +
Sbjct: 65 LPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 122
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 85 VVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPP------NLTSLNLAS 138
++ +DIS + + L SL ++GNS + LP NLT L+L+
Sbjct: 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQ 503
Query: 139 NNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNN 188
P + S+ SL LN+S N+ + L L LD S N+
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,261,646
Number of Sequences: 62578
Number of extensions: 350229
Number of successful extensions: 1208
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1010
Number of HSP's gapped (non-prelim): 183
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)