Query 013460
Match_columns 442
No_of_seqs 529 out of 3638
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:04:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-29 2.9E-34 278.2 22.7 175 83-258 404-585 (968)
2 PLN00113 leucine-rich repeat r 99.9 2.1E-25 4.5E-30 245.1 20.5 216 39-257 26-273 (968)
3 PLN03150 hypothetical protein; 99.8 1.2E-18 2.7E-23 180.5 16.3 136 36-197 366-510 (623)
4 KOG4194 Membrane glycoprotein 99.7 4.4E-18 9.6E-23 164.2 -0.5 179 82-260 268-455 (873)
5 KOG0617 Ras suppressor protein 99.7 5.7E-19 1.2E-23 145.6 -5.7 171 82-257 32-212 (264)
6 KOG0444 Cytoskeletal regulator 99.6 9.3E-17 2E-21 156.3 -0.4 174 83-261 103-308 (1255)
7 KOG4194 Membrane glycoprotein 99.6 7.6E-16 1.7E-20 149.0 4.5 176 83-258 125-331 (873)
8 KOG4237 Extracellular matrix p 99.6 6.4E-16 1.4E-20 143.1 0.8 177 84-260 68-362 (498)
9 KOG0444 Cytoskeletal regulator 99.5 6.8E-16 1.5E-20 150.4 -1.6 150 83-236 32-186 (1255)
10 KOG0617 Ras suppressor protein 99.5 3.5E-16 7.5E-21 129.2 -4.0 153 103-259 29-188 (264)
11 PRK15370 E3 ubiquitin-protein 99.5 3.7E-13 8E-18 140.7 15.6 171 31-215 52-297 (754)
12 PRK15370 E3 ubiquitin-protein 99.4 3.6E-13 7.7E-18 140.9 9.6 163 83-258 199-381 (754)
13 KOG0472 Leucine-rich repeat pr 99.4 3.2E-15 7E-20 138.8 -7.5 168 84-257 138-310 (565)
14 PLN03210 Resistant to P. syrin 99.4 5.3E-12 1.1E-16 140.4 13.9 81 177-257 778-859 (1153)
15 PRK15387 E3 ubiquitin-protein 99.4 3.1E-12 6.8E-17 133.3 11.0 14 43-56 188-201 (788)
16 KOG0618 Serine/threonine phosp 99.4 5.9E-14 1.3E-18 142.7 -1.8 127 129-257 359-489 (1081)
17 KOG0532 Leucine-rich repeat (L 99.3 1.6E-14 3.4E-19 139.7 -5.9 169 84-259 76-249 (722)
18 PRK15387 E3 ubiquitin-protein 99.3 5.2E-12 1.1E-16 131.7 12.2 161 80-257 198-375 (788)
19 cd00116 LRR_RI Leucine-rich re 99.3 3.7E-13 7.9E-18 129.3 2.5 176 82-257 80-291 (319)
20 cd00116 LRR_RI Leucine-rich re 99.3 9.4E-13 2E-17 126.4 4.5 175 83-257 51-263 (319)
21 KOG0472 Leucine-rich repeat pr 99.2 4.9E-13 1.1E-17 124.4 -1.7 170 83-257 362-541 (565)
22 PLN03210 Resistant to P. syrin 99.2 1E-10 2.2E-15 130.2 13.7 172 83-257 558-738 (1153)
23 KOG0618 Serine/threonine phosp 99.2 1.7E-12 3.7E-17 132.3 -3.3 151 83-236 241-420 (1081)
24 PF14580 LRR_9: Leucine-rich r 99.1 3.3E-11 7.1E-16 103.6 4.3 106 107-214 19-126 (175)
25 PLN03150 hypothetical protein; 99.1 8.8E-11 1.9E-15 122.2 7.9 107 154-260 419-531 (623)
26 KOG3207 Beta-tubulin folding c 99.1 2.6E-11 5.6E-16 114.3 1.1 176 82-258 145-340 (505)
27 KOG0532 Leucine-rich repeat (L 99.1 3.9E-12 8.5E-17 123.4 -4.7 149 83-237 98-248 (722)
28 KOG1187 Serine/threonine prote 99.1 1.2E-10 2.7E-15 112.8 5.0 46 396-441 61-106 (361)
29 PF14580 LRR_9: Leucine-rich r 99.1 1.7E-10 3.7E-15 99.2 4.9 105 129-238 19-128 (175)
30 COG4886 Leucine-rich repeat (L 99.0 1.9E-10 4.2E-15 113.9 5.0 170 84-257 117-290 (394)
31 KOG1259 Nischarin, modulator o 99.0 3E-11 6.5E-16 108.7 -0.9 123 108-236 285-412 (490)
32 COG4886 Leucine-rich repeat (L 98.9 6.7E-10 1.4E-14 110.1 3.9 154 84-242 141-296 (394)
33 KOG1259 Nischarin, modulator o 98.9 1.2E-10 2.7E-15 104.8 -1.3 131 83-217 284-415 (490)
34 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.5E-14 77.4 2.2 58 155-212 3-60 (61)
35 PF13855 LRR_8: Leucine rich r 98.8 1.6E-09 3.6E-14 76.6 2.8 61 129-189 1-61 (61)
36 KOG3207 Beta-tubulin folding c 98.8 8E-10 1.7E-14 104.4 -0.2 175 83-257 121-314 (505)
37 KOG4237 Extracellular matrix p 98.7 1.6E-09 3.5E-14 101.1 -0.6 128 108-235 68-200 (498)
38 KOG1859 Leucine-rich repeat pr 98.6 1.9E-09 4.2E-14 107.7 -3.1 127 129-260 164-295 (1096)
39 KOG1909 Ran GTPase-activating 98.6 7.6E-09 1.6E-13 95.4 -0.2 175 83-257 92-311 (382)
40 KOG0531 Protein phosphatase 1, 98.5 2E-08 4.3E-13 100.0 0.3 170 82-257 94-268 (414)
41 KOG0531 Protein phosphatase 1, 98.4 3.4E-08 7.3E-13 98.4 -1.8 170 83-259 72-247 (414)
42 KOG4579 Leucine-rich repeat (L 98.3 2.3E-08 4.9E-13 80.3 -3.3 107 85-195 29-140 (177)
43 KOG1909 Ran GTPase-activating 98.3 2.2E-07 4.8E-12 85.9 2.1 131 83-213 30-197 (382)
44 PF08263 LRRNT_2: Leucine rich 98.2 2.2E-06 4.7E-11 55.6 4.7 39 41-81 2-43 (43)
45 KOG2982 Uncharacterized conser 98.2 1.5E-07 3.2E-12 85.2 -1.1 175 83-257 71-262 (418)
46 KOG1859 Leucine-rich repeat pr 98.2 1.3E-08 2.8E-13 102.0 -8.6 123 108-236 165-292 (1096)
47 KOG4579 Leucine-rich repeat (L 98.2 4.2E-08 9.2E-13 78.7 -4.6 81 130-213 54-135 (177)
48 KOG2120 SCF ubiquitin ligase, 98.2 9.9E-08 2.1E-12 86.3 -3.8 152 83-234 185-349 (419)
49 PF12799 LRR_4: Leucine Rich r 98.1 5.2E-06 1.1E-10 53.9 3.7 36 154-190 2-37 (44)
50 KOG1644 U2-associated snRNP A' 98.0 8.7E-06 1.9E-10 70.0 5.4 102 129-232 42-149 (233)
51 KOG4658 Apoptotic ATPase [Sign 98.0 4.6E-06 1E-10 89.5 4.6 127 107-234 523-653 (889)
52 PF12799 LRR_4: Leucine Rich r 98.0 1.2E-05 2.5E-10 52.3 4.1 38 129-167 1-38 (44)
53 KOG3653 Transforming growth fa 97.9 2.7E-05 5.9E-10 75.0 7.9 26 415-441 215-240 (534)
54 KOG4658 Apoptotic ATPase [Sign 97.9 6.3E-06 1.4E-10 88.4 3.8 126 84-213 524-654 (889)
55 PRK15386 type III secretion pr 97.8 7.4E-05 1.6E-09 72.5 8.4 131 83-234 52-188 (426)
56 PRK15386 type III secretion pr 97.8 0.00012 2.6E-09 71.0 9.3 112 83-212 72-188 (426)
57 COG5238 RNA1 Ran GTPase-activa 97.7 4.5E-05 9.7E-10 68.6 5.0 174 83-257 30-255 (388)
58 KOG2982 Uncharacterized conser 97.7 5.1E-06 1.1E-10 75.5 -1.1 84 129-212 71-157 (418)
59 KOG1644 U2-associated snRNP A' 97.6 9.8E-05 2.1E-09 63.7 4.7 99 153-253 42-149 (233)
60 KOG3665 ZYG-1-like serine/thre 97.5 4.7E-05 1E-09 79.8 2.4 130 83-214 122-263 (699)
61 COG5238 RNA1 Ran GTPase-activa 97.5 5.2E-05 1.1E-09 68.2 1.7 132 83-214 92-255 (388)
62 KOG3665 ZYG-1-like serine/thre 97.5 9E-05 2E-09 77.7 3.8 132 107-240 122-267 (699)
63 PLN03224 probable serine/threo 97.2 0.00025 5.3E-09 71.9 3.5 34 408-441 143-193 (507)
64 KOG2739 Leucine-rich acidic nu 97.2 0.00024 5.2E-09 63.8 2.8 63 151-215 63-130 (260)
65 KOG2739 Leucine-rich acidic nu 97.1 0.00033 7.1E-09 62.9 2.4 91 145-237 35-130 (260)
66 KOG0196 Tyrosine kinase, EPH ( 97.0 0.00084 1.8E-08 68.9 5.0 41 400-440 610-663 (996)
67 KOG2120 SCF ubiquitin ligase, 96.9 3.8E-05 8.2E-10 70.0 -4.6 137 75-214 128-273 (419)
68 KOG2052 Activin A type IB rece 96.8 0.0021 4.6E-08 61.9 5.7 26 415-441 216-241 (513)
69 KOG2123 Uncharacterized conser 96.8 6.3E-05 1.4E-09 67.9 -4.3 77 129-207 41-123 (388)
70 KOG1025 Epidermal growth facto 96.7 0.0026 5.6E-08 65.8 5.8 28 414-441 700-732 (1177)
71 PLN03225 Serine/threonine-prot 96.7 0.0013 2.9E-08 68.1 3.5 34 408-441 130-168 (566)
72 KOG2123 Uncharacterized conser 96.6 0.00011 2.4E-09 66.4 -4.5 99 83-183 19-123 (388)
73 PF13306 LRR_5: Leucine rich r 96.5 0.011 2.4E-07 48.2 7.5 115 83-203 12-128 (129)
74 KOG0193 Serine/threonine prote 96.4 0.0019 4.1E-08 64.6 2.7 37 396-441 385-421 (678)
75 PTZ00284 protein kinase; Provi 95.9 0.0041 9E-08 63.1 2.3 40 402-441 121-161 (467)
76 PF13306 LRR_5: Leucine rich r 95.5 0.03 6.4E-07 45.5 5.6 82 101-185 6-89 (129)
77 KOG0600 Cdc2-related protein k 95.4 0.0057 1.2E-07 60.0 1.1 28 415-442 122-150 (560)
78 PF00560 LRR_1: Leucine Rich R 95.4 0.0073 1.6E-07 32.6 1.0 12 131-142 2-13 (22)
79 PF00560 LRR_1: Leucine Rich R 95.3 0.0075 1.6E-07 32.5 0.8 18 155-173 2-19 (22)
80 PTZ00036 glycogen synthase kin 95.3 0.013 2.8E-07 59.0 3.1 33 409-441 65-98 (440)
81 TIGR01982 UbiB 2-polyprenylphe 95.2 0.014 3E-07 58.5 2.9 31 410-441 118-148 (437)
82 KOG1006 Mitogen-activated prot 95.1 0.0065 1.4E-07 54.9 0.4 38 398-442 59-97 (361)
83 PTZ00283 serine/threonine prot 95.1 0.013 2.7E-07 60.0 2.4 35 407-441 29-64 (496)
84 PF03109 ABC1: ABC1 family; I 95.1 0.0064 1.4E-07 49.0 0.1 29 412-441 14-42 (119)
85 KOG1024 Receptor-like protein 95.0 0.016 3.6E-07 55.2 2.7 32 402-433 276-307 (563)
86 KOG0192 Tyrosine kinase specif 94.9 0.016 3.4E-07 56.3 2.5 27 415-441 46-72 (362)
87 smart00090 RIO RIO-like kinase 94.9 0.022 4.8E-07 52.0 3.3 27 415-441 33-61 (237)
88 KOG0663 Protein kinase PITSLRE 94.9 0.01 2.3E-07 55.3 1.0 27 415-441 81-108 (419)
89 cd05104 PTKc_Kit Catalytic dom 94.7 0.02 4.4E-07 56.2 2.5 30 412-441 37-72 (375)
90 KOG4308 LRR-containing protein 94.6 0.00023 5E-09 71.5 -11.3 174 85-258 89-304 (478)
91 KOG1026 Nerve growth factor re 94.4 0.035 7.7E-07 57.9 3.6 36 399-441 482-523 (774)
92 KOG1035 eIF-2alpha kinase GCN2 94.4 0.012 2.7E-07 63.5 0.3 33 410-442 479-512 (1351)
93 cd05596 STKc_ROCK Catalytic do 94.2 0.022 4.8E-07 55.8 1.7 36 406-441 39-75 (370)
94 KOG4236 Serine/threonine prote 94.2 0.027 5.9E-07 55.7 2.1 30 412-442 567-597 (888)
95 cd05622 STKc_ROCK1 Catalytic d 94.2 0.032 7E-07 54.7 2.7 41 401-441 34-75 (371)
96 PF01102 Glycophorin_A: Glycop 94.1 0.08 1.7E-06 42.4 4.3 30 299-328 60-89 (122)
97 cd05106 PTKc_CSF-1R Catalytic 94.1 0.031 6.7E-07 54.9 2.4 30 412-441 40-75 (374)
98 PLN00034 mitogen-activated pro 94.0 0.034 7.5E-07 54.0 2.5 27 415-441 79-106 (353)
99 cd05621 STKc_ROCK2 Catalytic d 93.8 0.041 8.9E-07 54.0 2.7 39 403-441 36-75 (370)
100 KOG1094 Discoidin domain recep 93.7 0.77 1.7E-05 46.5 11.1 27 415-441 543-569 (807)
101 PRK04750 ubiB putative ubiquin 93.6 0.054 1.2E-06 55.4 3.1 31 410-441 120-151 (537)
102 cd05105 PTKc_PDGFR_alpha Catal 93.5 0.062 1.3E-06 53.3 3.4 30 412-441 39-74 (400)
103 KOG0194 Protein tyrosine kinas 93.5 0.061 1.3E-06 53.7 3.2 27 415-441 162-193 (474)
104 KOG1027 Serine/threonine prote 93.5 0.028 6E-07 58.6 0.8 29 412-441 511-540 (903)
105 PHA03211 serine/threonine kina 93.4 0.065 1.4E-06 54.2 3.4 33 409-441 168-201 (461)
106 cd05107 PTKc_PDGFR_beta Cataly 93.2 0.055 1.2E-06 53.7 2.5 27 415-441 42-74 (401)
107 KOG0574 STE20-like serine/thre 93.1 0.0092 2E-07 54.7 -2.9 26 416-441 39-65 (502)
108 PTZ00426 cAMP-dependent protei 93.1 0.07 1.5E-06 51.6 2.9 30 412-441 32-63 (340)
109 KOG1166 Mitotic checkpoint ser 93.0 0.044 9.6E-07 59.1 1.5 38 404-441 692-729 (974)
110 KOG1989 ARK protein kinase fam 93.0 0.075 1.6E-06 55.6 3.1 28 415-442 42-70 (738)
111 PF13504 LRR_7: Leucine rich r 92.2 0.082 1.8E-06 26.4 1.1 8 156-163 4-11 (17)
112 PHA03209 serine/threonine kina 92.2 0.13 2.9E-06 50.1 3.6 34 408-441 64-98 (357)
113 KOG0473 Leucine-rich repeat pr 91.8 0.004 8.6E-08 55.1 -6.6 81 131-214 44-124 (326)
114 KOG1095 Protein tyrosine kinas 91.7 0.12 2.5E-06 56.2 2.6 27 415-441 697-729 (1025)
115 KOG4308 LRR-containing protein 91.7 0.0023 4.9E-08 64.4 -9.6 155 83-237 115-304 (478)
116 PHA03212 serine/threonine kina 91.5 0.17 3.8E-06 50.0 3.6 32 410-441 92-124 (391)
117 PRK09605 bifunctional UGMP fam 91.0 0.16 3.4E-06 52.5 2.8 39 401-440 324-362 (535)
118 KOG4257 Focal adhesion tyrosin 91.0 0.14 3E-06 52.0 2.2 27 414-440 393-424 (974)
119 KOG0581 Mitogen-activated prot 90.8 0.27 5.7E-06 46.7 3.7 37 398-441 74-111 (364)
120 PF08693 SKG6: Transmembrane a 90.8 0.064 1.4E-06 33.4 -0.2 26 303-328 12-37 (40)
121 cd05055 PTKc_PDGFR Catalytic d 90.7 0.14 3E-06 48.5 2.0 31 411-441 36-72 (302)
122 KOG0605 NDR and related serine 90.6 0.23 5E-06 49.4 3.3 32 410-441 141-173 (550)
123 KOG0473 Leucine-rich repeat pr 90.1 0.0061 1.3E-07 54.0 -7.1 87 148-236 37-124 (326)
124 smart00369 LRR_TYP Leucine-ric 89.1 0.38 8.3E-06 26.8 2.2 13 178-190 3-15 (26)
125 smart00370 LRR Leucine-rich re 89.1 0.38 8.3E-06 26.8 2.2 13 178-190 3-15 (26)
126 KOG0032 Ca2+/calmodulin-depend 89.1 0.31 6.7E-06 47.8 3.0 27 416-442 41-68 (382)
127 KOG1167 Serine/threonine prote 88.6 0.14 3E-06 49.4 0.1 34 409-442 35-72 (418)
128 KOG3864 Uncharacterized conser 87.9 0.093 2E-06 45.7 -1.4 82 129-210 101-185 (221)
129 KOG0694 Serine/threonine prote 87.8 0.46 1E-05 48.8 3.2 32 410-441 368-400 (694)
130 KOG0199 ACK and related non-re 87.3 0.34 7.4E-06 50.0 1.9 26 416-441 116-145 (1039)
131 KOG0197 Tyrosine kinases [Sign 87.0 0.44 9.6E-06 47.2 2.5 37 398-441 201-237 (468)
132 smart00369 LRR_TYP Leucine-ric 87.0 0.66 1.4E-05 25.8 2.3 15 153-167 2-16 (26)
133 smart00370 LRR Leucine-rich re 87.0 0.66 1.4E-05 25.8 2.3 15 153-167 2-16 (26)
134 KOG4721 Serine/threonine prote 86.9 0.33 7E-06 48.9 1.6 36 398-441 119-154 (904)
135 PHA03207 serine/threonine kina 86.7 0.56 1.2E-05 46.3 3.2 31 411-441 93-126 (392)
136 KOG0984 Mitogen-activated prot 86.4 0.28 6E-06 43.1 0.7 28 415-442 51-79 (282)
137 KOG1151 Tousled-like protein k 86.4 0.13 2.9E-06 49.9 -1.4 26 416-441 469-495 (775)
138 PF13516 LRR_6: Leucine Rich r 86.2 0.22 4.7E-06 27.3 -0.1 15 153-167 2-16 (24)
139 COG0661 AarF Predicted unusual 85.4 0.52 1.1E-05 48.0 2.2 31 410-441 126-156 (517)
140 PF07213 DAP10: DAP10 membrane 85.2 2.4 5.3E-05 30.7 4.9 36 298-333 29-64 (79)
141 KOG1165 Casein kinase (serine/ 85.2 0.63 1.4E-05 43.9 2.4 28 414-441 32-60 (449)
142 PF04478 Mid2: Mid2 like cell 84.3 0.37 7.9E-06 39.8 0.4 9 303-311 49-57 (154)
143 PTZ00382 Variant-specific surf 84.2 0.35 7.7E-06 37.1 0.3 18 298-315 61-78 (96)
144 KOG3864 Uncharacterized conser 83.8 0.14 3E-06 44.6 -2.3 77 83-160 101-183 (221)
145 KOG1947 Leucine rich repeat pr 83.6 0.31 6.7E-06 49.3 -0.3 110 105-214 186-308 (482)
146 KOG0667 Dual-specificity tyros 83.5 1 2.2E-05 45.9 3.3 27 415-441 191-218 (586)
147 PF01034 Syndecan: Syndecan do 82.3 0.39 8.5E-06 33.2 -0.1 14 302-315 12-25 (64)
148 PF14575 EphA2_TM: Ephrin type 81.9 0.87 1.9E-05 33.2 1.6 17 399-415 56-72 (75)
149 KOG3763 mRNA export factor TAP 81.8 0.7 1.5E-05 46.4 1.3 64 175-238 216-285 (585)
150 KOG0664 Nemo-like MAPK-related 80.1 0.82 1.8E-05 41.8 1.1 28 414-441 57-85 (449)
151 KOG0986 G protein-coupled rece 79.7 0.5 1.1E-05 46.3 -0.4 32 410-441 185-217 (591)
152 PHA03210 serine/threonine kina 79.4 0.81 1.8E-05 46.9 1.0 24 410-433 148-171 (501)
153 KOG4279 Serine/threonine prote 78.7 1.6 3.4E-05 45.4 2.7 27 415-441 580-607 (1226)
154 KOG1235 Predicted unusual prot 78.0 1.8 3.9E-05 44.2 2.9 33 408-441 160-192 (538)
155 KOG0592 3-phosphoinositide-dep 76.9 1.4 3E-05 44.2 1.7 32 410-441 73-105 (604)
156 KOG0615 Serine/threonine prote 76.7 2.4 5.3E-05 41.2 3.2 27 415-441 177-204 (475)
157 KOG1947 Leucine rich repeat pr 76.0 1.1 2.5E-05 45.2 0.9 108 129-236 188-308 (482)
158 PTZ00267 NIMA-related protein 75.7 2.6 5.7E-05 42.9 3.5 27 415-441 72-100 (478)
159 PF08374 Protocadherin: Protoc 74.3 2.5 5.4E-05 37.1 2.4 20 302-321 37-56 (221)
160 smart00365 LRR_SD22 Leucine-ri 73.4 3.1 6.7E-05 23.4 1.8 14 177-190 2-15 (26)
161 PRK10359 lipopolysaccharide co 73.4 2.9 6.2E-05 37.9 2.7 32 409-441 30-61 (232)
162 PF02009 Rifin_STEVOR: Rifin/s 72.6 3.4 7.4E-05 38.8 3.1 10 305-314 258-267 (299)
163 smart00364 LRR_BAC Leucine-ric 72.2 2.6 5.7E-05 23.6 1.3 13 178-190 3-15 (26)
164 PF01102 Glycophorin_A: Glycop 72.2 4.6 0.0001 32.4 3.3 29 301-330 66-94 (122)
165 KOG0983 Mitogen-activated prot 70.4 4.1 9E-05 37.5 3.0 35 400-441 89-124 (391)
166 KOG0578 p21-activated serine/t 70.0 3.5 7.5E-05 41.6 2.6 26 416-441 279-305 (550)
167 PF02439 Adeno_E3_CR2: Adenovi 69.7 15 0.00032 22.7 4.2 27 306-332 6-32 (38)
168 PF15176 LRR19-TM: Leucine-ric 68.1 15 0.00032 28.1 5.0 24 299-322 14-37 (102)
169 KOG0200 Fibroblast/platelet-de 67.4 3.6 7.9E-05 43.2 2.3 27 415-441 301-335 (609)
170 smart00368 LRR_RI Leucine rich 66.3 5 0.00011 22.8 1.8 13 178-190 3-15 (28)
171 PF15102 TMEM154: TMEM154 prot 62.6 4.6 0.0001 33.3 1.6 9 399-407 124-132 (146)
172 KOG4341 F-box protein containi 62.3 2.8 6E-05 40.9 0.2 152 83-234 268-437 (483)
173 PF14991 MLANA: Protein melan- 62.1 1.6 3.5E-05 33.9 -1.1 27 304-330 25-51 (118)
174 KOG3763 mRNA export factor TAP 60.4 5.6 0.00012 40.2 2.0 64 151-216 216-285 (585)
175 PRK01723 3-deoxy-D-manno-octul 58.7 11 0.00023 34.4 3.5 26 415-441 36-62 (239)
176 PF04478 Mid2: Mid2 like cell 58.4 2.9 6.3E-05 34.6 -0.3 20 295-314 45-64 (154)
177 PF12877 DUF3827: Domain of un 58.3 13 0.00027 38.4 4.1 28 301-328 268-295 (684)
178 PF13095 FTA2: Kinetochore Sim 57.7 11 0.00025 33.3 3.3 31 410-441 37-68 (207)
179 KOG0585 Ca2+/calmodulin-depend 57.3 9.6 0.00021 38.0 3.0 30 412-441 99-129 (576)
180 KOG0596 Dual specificity; seri 56.6 4.3 9.3E-05 41.1 0.5 28 415-442 366-393 (677)
181 PF01034 Syndecan: Syndecan do 55.4 4.8 0.0001 28.0 0.5 26 303-328 9-35 (64)
182 PF03302 VSP: Giardia variant- 55.1 7.4 0.00016 38.5 1.9 30 296-325 360-390 (397)
183 KOG4278 Protein tyrosine kinas 55.0 7.1 0.00015 40.2 1.7 27 415-441 272-299 (1157)
184 PF09919 DUF2149: Uncharacteri 54.8 10 0.00022 28.8 2.1 20 419-440 71-91 (92)
185 PF12191 stn_TNFRSF12A: Tumour 54.7 4.3 9.2E-05 32.4 0.1 25 308-332 84-108 (129)
186 PF06697 DUF1191: Protein of u 52.4 11 0.00023 34.9 2.3 18 301-318 212-229 (278)
187 COG0478 RIO-like serine/threon 50.6 16 0.00035 33.9 3.1 27 415-441 96-122 (304)
188 PF06365 CD34_antigen: CD34/Po 48.8 30 0.00066 30.4 4.4 28 304-331 101-129 (202)
189 KOG0611 Predicted serine/threo 47.7 9.1 0.0002 37.3 1.1 25 417-441 60-85 (668)
190 KOG4258 Insulin/growth factor 46.7 9.1 0.0002 40.7 1.1 30 403-433 988-1017(1025)
191 PF05454 DAG1: Dystroglycan (D 46.6 6.5 0.00014 36.7 0.0 6 328-333 172-177 (290)
192 PF12301 CD99L2: CD99 antigen 46.5 41 0.00089 28.8 4.8 21 298-318 110-130 (169)
193 PF13908 Shisa: Wnt and FGF in 45.9 15 0.00033 31.8 2.2 14 302-315 78-91 (179)
194 PF05393 Hum_adeno_E3A: Human 45.5 50 0.0011 24.6 4.3 9 320-328 49-57 (94)
195 KOG1033 eIF-2alpha kinase PEK/ 45.0 5.5 0.00012 40.0 -0.8 35 408-442 47-82 (516)
196 PF04971 Lysis_S: Lysis protei 43.4 32 0.0007 24.3 3.0 13 303-315 33-45 (68)
197 KOG0607 MAP kinase-interacting 42.2 12 0.00026 35.4 1.0 36 401-441 74-110 (463)
198 KOG4645 MAPKKK (MAP kinase kin 40.2 12 0.00026 42.0 0.8 35 407-441 1232-1267(1509)
199 KOG0579 Ste20-like serine/thre 39.6 6.5 0.00014 40.6 -1.2 21 417-437 39-59 (1187)
200 PF14654 Epiglycanin_C: Mucin, 39.5 91 0.002 23.7 5.0 31 298-328 13-43 (106)
201 PF01299 Lamp: Lysosome-associ 38.8 26 0.00057 33.3 2.8 6 306-311 273-278 (306)
202 PF05545 FixQ: Cbb3-type cytoc 37.5 54 0.0012 21.4 3.3 7 322-328 26-32 (49)
203 KOG0616 cAMP-dependent protein 37.2 28 0.0006 32.7 2.5 26 415-440 49-75 (355)
204 KOG4242 Predicted myosin-I-bin 37.2 26 0.00057 34.9 2.5 106 108-213 166-280 (553)
205 PF04689 S1FA: DNA binding pro 35.1 50 0.0011 22.9 2.8 23 298-320 8-30 (69)
206 PF05808 Podoplanin: Podoplani 34.9 13 0.00028 31.2 0.0 27 296-322 122-148 (162)
207 TIGR01478 STEVOR variant surfa 34.8 51 0.0011 30.5 3.8 27 307-333 265-291 (295)
208 KOG0610 Putative serine/threon 34.5 36 0.00079 33.4 2.9 26 416-441 83-109 (459)
209 KOG0612 Rho-associated, coiled 33.2 13 0.00029 41.0 -0.2 38 404-441 69-107 (1317)
210 TIGR00864 PCC polycystin catio 33.0 31 0.00067 42.1 2.6 32 159-190 1-32 (2740)
211 PTZ00370 STEVOR; Provisional 32.6 53 0.0011 30.5 3.5 20 314-333 268-287 (296)
212 KOG4341 F-box protein containi 31.8 14 0.00031 36.1 -0.2 131 106-236 267-414 (483)
213 KOG1152 Signal transduction se 31.8 44 0.00096 34.4 3.1 30 412-441 563-593 (772)
214 KOG0696 Serine/threonine prote 31.6 24 0.00052 34.7 1.2 36 404-440 344-380 (683)
215 KOG4242 Predicted myosin-I-bin 31.2 57 0.0012 32.7 3.7 35 67-101 141-183 (553)
216 PF12768 Rax2: Cortical protei 29.8 61 0.0013 30.4 3.6 10 298-307 222-231 (281)
217 PTZ00382 Variant-specific surf 29.5 22 0.00047 27.3 0.5 17 298-314 65-81 (96)
218 PF00558 Vpu: Vpu protein; In 29.4 76 0.0016 23.4 3.2 18 304-321 8-25 (81)
219 KOG0586 Serine/threonine prote 29.3 49 0.0011 34.1 3.0 32 410-441 56-88 (596)
220 TIGR00864 PCC polycystin catio 29.0 37 0.00079 41.5 2.3 32 135-166 1-32 (2740)
221 PHA03265 envelope glycoprotein 27.6 60 0.0013 31.0 3.0 9 15-23 4-12 (402)
222 PF14914 LRRC37AB_C: LRRC37A/B 27.0 1.1E+02 0.0024 25.3 4.1 20 304-323 121-140 (154)
223 PF05725 FNIP: FNIP Repeat; I 26.5 1.1E+02 0.0024 19.3 3.3 7 108-114 13-19 (44)
224 PF02158 Neuregulin: Neureguli 25.2 24 0.00051 34.0 0.0 18 304-321 11-28 (404)
225 smart00367 LRR_CC Leucine-rich 25.0 52 0.0011 18.0 1.4 11 177-187 2-12 (26)
226 PF10873 DUF2668: Protein of u 23.5 86 0.0019 25.8 2.8 12 303-314 61-72 (155)
227 PF01299 Lamp: Lysosome-associ 23.4 39 0.00085 32.1 1.1 19 300-318 271-289 (306)
228 cd03690 Tet_II Tet_II: This su 23.4 49 0.0011 24.5 1.4 23 417-439 16-38 (85)
229 PF15069 FAM163: FAM163 family 23.3 78 0.0017 26.1 2.6 19 304-322 7-25 (143)
230 KOG0690 Serine/threonine prote 23.1 44 0.00095 31.8 1.3 31 410-440 168-199 (516)
231 PF10873 DUF2668: Protein of u 23.0 69 0.0015 26.3 2.2 26 300-325 62-87 (155)
232 PF07204 Orthoreo_P10: Orthore 23.0 61 0.0013 24.5 1.8 7 322-328 60-66 (98)
233 KOG1290 Serine/threonine prote 21.3 91 0.002 31.5 3.1 27 415-441 83-110 (590)
234 PF12768 Rax2: Cortical protei 21.0 98 0.0021 29.0 3.2 34 295-328 223-256 (281)
235 PF02009 Rifin_STEVOR: Rifin/s 21.0 1E+02 0.0022 29.2 3.3 9 310-318 260-268 (299)
236 KOG3482 Small nuclear ribonucl 20.7 86 0.0019 22.3 2.0 15 417-431 21-35 (79)
237 KOG0584 Serine/threonine prote 20.6 34 0.00073 35.3 0.0 17 415-431 45-61 (632)
238 PRK15449 ferredoxin-like prote 20.5 54 0.0012 25.1 1.1 12 417-428 82-93 (95)
239 PF02038 ATP1G1_PLM_MAT8: ATP1 20.3 1.1E+02 0.0023 20.3 2.3 10 305-314 16-25 (50)
240 PF06089 Asparaginase_II: L-as 20.2 1.4E+02 0.0031 28.5 4.1 35 403-441 238-273 (324)
241 PF08374 Protocadherin: Protoc 20.0 1.8E+02 0.004 25.8 4.4 25 297-322 36-60 (221)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.3e-29 Score=278.22 Aligned_cols=175 Identities=30% Similarity=0.479 Sum_probs=153.0
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNV 160 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (442)
.+++.|+|++|++++.+|..+..++.|+.|++++|.+++.+|..+. ++|+.|+|++|.+.+.+|..+ .+.+|+.|+|
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~l 482 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDL 482 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEEC
Confidence 6789999999999999999999999999999999999988887655 889999999999988888765 4588999999
Q ss_pred ccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCccc
Q 013460 161 SRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSGW 238 (442)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~~ 238 (442)
++|++++.+|..+.++++|+.|+|++|++.+.+|..+..+++|+.|+|++|.+++.+| .+..++ |+.|+|++|.+++.
T Consensus 483 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 562 (968)
T PLN00113 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562 (968)
T ss_pred cCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccccc
Confidence 9999999899889999999999999999999999999999999999999999998776 677777 99999999999998
Q ss_pred CChhc---cccccccccCCcCCC
Q 013460 239 IPREL---ISIRTFIYDGNSFDN 258 (442)
Q Consensus 239 ~p~~~---~~l~~l~~~~n~~~~ 258 (442)
+|..+ ..++.+++++|.+.+
T Consensus 563 ~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 563 IPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CChhHhcCcccCEEeccCCccee
Confidence 88765 446778889998874
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=2.1e-25 Score=245.08 Aligned_cols=216 Identities=30% Similarity=0.556 Sum_probs=162.7
Q ss_pred CChHHHHHHHHHHHhCCCCC-CCCCCCCCCCCCCCCCCccEEecC-CcEEEEEeCCCCCCcccchhccCCCCCCEEEccC
Q 013460 39 TDSSDVQALQVLYTSLNSPS-VLTNWKGNEGDPCGESWKGVACEG-SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSG 116 (442)
Q Consensus 39 ~~~~~~~~L~~~~~~~~~~~-~l~~w~~~~~~~c~~~w~gv~c~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 116 (442)
..+.|..||++|+..++++. ++.+|.. ..++| .|.||.|.. ++|+.|+|++|++.+.++..+..+++|+.|+|++
T Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~-~~~~c--~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~ 102 (968)
T PLN00113 26 LHAEELELLLSFKSSINDPLKYLSNWNS-SADVC--LWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN 102 (968)
T ss_pred CCHHHHHHHHHHHHhCCCCcccCCCCCC-CCCCC--cCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCC
Confidence 36689999999999997653 6789964 45777 899999974 6899999999999888888888888888888888
Q ss_pred CCCCCCCCCCcc---CCCcEE----------------------EccCCcCCCCccccccCCCCCCEEEcccCcCCCchhh
Q 013460 117 NSIHDTIPYQLP---PNLTSL----------------------NLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGD 171 (442)
Q Consensus 117 n~l~~~~p~~~~---~~L~~L----------------------~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 171 (442)
|.+.+.+|..+. .+|++| +|++|.+++.+|..++++++|++|+|++|.+.+.+|.
T Consensus 103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred CccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 888776665432 444444 4555555555666677777777777777777777777
Q ss_pred hhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCcccCChhc---ccc
Q 013460 172 IFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSGWIPREL---ISI 246 (442)
Q Consensus 172 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~~~p~~~---~~l 246 (442)
.+.++++|++|+|++|++.+.+|..+.++++|++|+|++|++++.+| .+..++ |++|++++|.+++.+|..+ .++
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 77777777777777777777777777777777777777777776555 566666 8888888888888777654 456
Q ss_pred ccccccCCcCC
Q 013460 247 RTFIYDGNSFD 257 (442)
Q Consensus 247 ~~l~~~~n~~~ 257 (442)
+.|++.+|.+.
T Consensus 263 ~~L~L~~n~l~ 273 (968)
T PLN00113 263 QYLFLYQNKLS 273 (968)
T ss_pred CEEECcCCeee
Confidence 67778888765
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.79 E-value=1.2e-18 Score=180.47 Aligned_cols=136 Identities=38% Similarity=0.621 Sum_probs=76.5
Q ss_pred hcCCChHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC---CCCccEEecCC------cEEEEEeCCCCCCcccchhccCC
Q 013460 36 QCTTDSSDVQALQVLYTSLNSPSVLTNWKGNEGDPCG---ESWKGVACEGS------AVVSIDISGLGLSGTMGYLLSDL 106 (442)
Q Consensus 36 ~~~~~~~~~~~L~~~~~~~~~~~~l~~w~~~~~~~c~---~~w~gv~c~~~------~l~~L~L~~n~l~~~~~~~~~~l 106 (442)
+..+.++|..||+.+|..++.+. ..+|. ++||. ..|.||.|... .++.|+|++|++.|.+|..+..+
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~-~~~W~---g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L 441 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPL-RFGWN---GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKL 441 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcc-cCCCC---CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCC
Confidence 45567889999999999987543 23786 36663 37999999531 25555555555555555444444
Q ss_pred CCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCC
Q 013460 107 LSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSF 186 (442)
Q Consensus 107 ~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 186 (442)
++|+.|+|++|.+. |.+|..+..+++|+.|+|++|++++.+|+.++++++|++|+|++
T Consensus 442 ~~L~~L~Ls~N~l~----------------------g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 442 RHLQSINLSGNSIR----------------------GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred CCCCEEECCCCccc----------------------CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44444443333333 23333444455555555555555555555555555555555555
Q ss_pred CCCCCCCchhc
Q 013460 187 NNFSGDLPNSF 197 (442)
Q Consensus 187 N~l~~~~p~~l 197 (442)
|+++|.+|..+
T Consensus 500 N~l~g~iP~~l 510 (623)
T PLN03150 500 NSLSGRVPAAL 510 (623)
T ss_pred CcccccCChHH
Confidence 55555555444
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.67 E-value=4.4e-18 Score=164.23 Aligned_cols=179 Identities=26% Similarity=0.300 Sum_probs=155.0
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
..+++.|+|+.|+++..-..++..|+.|+.|+|++|.|....+..+. ++|++|+|++|+|+...+.+|..+..|++|+
T Consensus 268 l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence 36889999999999988888999999999999999999987777666 9999999999999988888999999999999
Q ss_pred cccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCc---hhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeeccc
Q 013460 160 VSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLP---NSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNH 234 (442)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~ 234 (442)
|++|++...-...|..+.+|++|||++|.+++.+- ..|..+++|+.|+|.+|++..+.. .|.+++ |+.|||.+|.
T Consensus 348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 99999998877889999999999999999986554 347789999999999999998764 888998 9999999999
Q ss_pred CcccCChhccc--cccccccCCcCCCCC
Q 013460 235 FSGWIPRELIS--IRTFIYDGNSFDNGP 260 (442)
Q Consensus 235 l~~~~p~~~~~--l~~l~~~~n~~~~~~ 260 (442)
|...-|..|.. |+.|.+..-.|.|.+
T Consensus 428 iaSIq~nAFe~m~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 428 IASIQPNAFEPMELKELVMNSSSFLCDC 455 (873)
T ss_pred ceeecccccccchhhhhhhcccceEEec
Confidence 99888876654 456666666666643
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=5.7e-19 Score=145.59 Aligned_cols=171 Identities=26% Similarity=0.394 Sum_probs=146.6
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
.++++.|.|+.|.++ .+|+.+.++.+|+.|++++|+|. .+|..+. +.|+.|+++-|.+. .+|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 468999999999998 56778999999999999999998 5676776 89999999999998 8899999999999999
Q ss_pred cccCcCCC-chhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcc
Q 013460 160 VSRNSLTQ-SIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSG 237 (442)
Q Consensus 160 L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~ 237 (442)
|.+|+++. .+|..|..+..|+.|+|++|.|. .+|..++++++|+.|.+.+|.+-..+..++.+. |+.|++.+|.++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT- 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee-
Confidence 99999874 57888888899999999999998 889999999999999999999988888888887 999999999998
Q ss_pred cCChhcccc------ccccccCCcCC
Q 013460 238 WIPRELISI------RTFIYDGNSFD 257 (442)
Q Consensus 238 ~~p~~~~~l------~~l~~~~n~~~ 257 (442)
.+|..+.++ +.+.+..|+|.
T Consensus 187 vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 187 VLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 455555443 23445666664
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.60 E-value=9.3e-17 Score=156.29 Aligned_cols=174 Identities=26% Similarity=0.329 Sum_probs=122.9
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc---CCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP---PNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~---~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
..++.|||+.|++. ..|..+..-+++-.|+|++|+|. .||..+. ..|-.||||+|.+. .+|+.+..+.+|++|.
T Consensus 103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLK 179 (1255)
T ss_pred ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhh
Confidence 45777888888776 45677777777888888888876 5666555 55667788888877 6677777777777777
Q ss_pred cccCcCC-------------------------CchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCC
Q 013460 160 VSRNSLT-------------------------QSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVT 214 (442)
Q Consensus 160 L~~n~l~-------------------------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 214 (442)
|++|-+. ..+|..+..+.+|..+|||.|++. .+|+.+-++.+|+.|+||+|+|+
T Consensus 180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 7777543 124556666777888888888887 77888888888888888888887
Q ss_pred ccCccCCCCC-ccEEEeecccCcccCChhccc---cccccccCCcCCCCCC
Q 013460 215 GSLNVFSGLP-LTTLNVANNHFSGWIPRELIS---IRTFIYDGNSFDNGPA 261 (442)
Q Consensus 215 ~~~~~~~~l~-L~~L~ls~N~l~~~~p~~~~~---l~~l~~~~n~~~~~~~ 261 (442)
..-.....+. |++|+||.|+++ .+|+.++. |+.|...+|.++...+
T Consensus 259 eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 259 ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCC
Confidence 6544444444 788888888887 56665544 3455566676664333
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.59 E-value=7.6e-16 Score=148.98 Aligned_cols=176 Identities=26% Similarity=0.273 Sum_probs=138.7
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNV 160 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (442)
++++.|+|.+|.|...-.+.+..++.|+.|||+.|.|+..--..++ .++++|+|++|.|+..-...|.++.+|.+|.|
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 5799999999999888888999999999999999999865555665 78999999999999888888999999999999
Q ss_pred ccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhcc------------------------CCCCCCEEEcccCcCCcc
Q 013460 161 SRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFI------------------------SLSNISSLYLQNNQVTGS 216 (442)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~------------------------~l~~L~~L~Ls~N~l~~~ 216 (442)
+.|+++...+..|.++++|+.|+|..|+|.-.---.|. .|.++++|+|+.|+++..
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 99999988788888899999999999887622122333 345556666666666544
Q ss_pred Cc-cCCCCC-ccEEEeecccCcccCChh---ccccccccccCCcCCC
Q 013460 217 LN-VFSGLP-LTTLNVANNHFSGWIPRE---LISIRTFIYDGNSFDN 258 (442)
Q Consensus 217 ~~-~~~~l~-L~~L~ls~N~l~~~~p~~---~~~l~~l~~~~n~~~~ 258 (442)
-. .+.++. |+.|+||+|.|...-++. -..|+.|+++.|.++.
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 32 455566 888888888888766643 3568888999998874
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.55 E-value=6.4e-16 Score=143.14 Aligned_cols=177 Identities=25% Similarity=0.319 Sum_probs=132.0
Q ss_pred cEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEE-EccCCcCCCCccccccCCC-------
Q 013460 84 AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSL-NLASNNFSGNLPYSIASMV------- 153 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L-~Ls~n~l~~~~p~~~~~l~------- 153 (442)
..+.|+|+.|+|+...+..|..+++|++|||++|+|+.+.|.+|. ++|..| ++++|.|+..--..|.++.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 467899999999999999999999999999999999999998887 555544 4455887743333333333
Q ss_pred -----------------CCCEEEcccCcCCC-------------------------------------------------
Q 013460 154 -----------------SLSYLNVSRNSLTQ------------------------------------------------- 167 (442)
Q Consensus 154 -----------------~L~~L~L~~n~l~~------------------------------------------------- 167 (442)
+|..|.+-+|.+..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 33223222222210
Q ss_pred ------------------------------------chh-hhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEccc
Q 013460 168 ------------------------------------SIG-DIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQN 210 (442)
Q Consensus 168 ------------------------------------~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 210 (442)
..| ..|..+++|++|+|++|++++.-+.+|..+..++.|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 000 1356788899999999999988888888999999999999
Q ss_pred CcCCccCc-cCCCCC-ccEEEeecccCcccCChhc---cccccccccCCcCCCCC
Q 013460 211 NQVTGSLN-VFSGLP-LTTLNVANNHFSGWIPREL---ISIRTFIYDGNSFDNGP 260 (442)
Q Consensus 211 N~l~~~~~-~~~~l~-L~~L~ls~N~l~~~~p~~~---~~l~~l~~~~n~~~~~~ 260 (442)
|++...-. .|.++. |+.|+|.+|+|+...|..| ..+.+|.+..|+|.|.+
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 98876443 677777 9999999999998888655 45678889999999854
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.53 E-value=6.8e-16 Score=150.37 Aligned_cols=150 Identities=26% Similarity=0.382 Sum_probs=70.9
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCC-CCccccccCCCCCCEEE
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFS-GNLPYSIASMVSLSYLN 159 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~ 159 (442)
++++.|.|...++. .+|+.++.+.+|++|.+++|++... -..+. +.|+.+.+..|++. .-+|..+..|..|+.||
T Consensus 32 t~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred hheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 34444444444333 3444455555555555555544421 11121 44555555555543 22444444555555555
Q ss_pred cccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCch-hccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCc
Q 013460 160 VSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPN-SFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFS 236 (442)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~ 236 (442)
|++|++. ..|..+..-+++-.|+||+|+|. .||. .+.++..|-.||||+|++...+|.+..+. |++|+|++|.+.
T Consensus 110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred cchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh
Confidence 5555554 34444444455555555555555 2332 23345555555555555555444444444 555555555544
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=3.5e-16 Score=129.25 Aligned_cols=153 Identities=30% Similarity=0.507 Sum_probs=135.4
Q ss_pred ccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCc
Q 013460 103 LSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLA 180 (442)
Q Consensus 103 ~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 180 (442)
+-++.+++.|.|++|.++ .+|..+. .+|+.|++.+|++. .+|.++..++.|+.|+++-|++. .+|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 446788999999999999 5566666 99999999999999 88999999999999999999997 7899999999999
Q ss_pred EEeCCCCCCCC-CCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccCChhc---cccccccccCCc
Q 013460 181 TLDLSFNNFSG-DLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWIPREL---ISIRTFIYDGNS 255 (442)
Q Consensus 181 ~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~p~~~---~~l~~l~~~~n~ 255 (442)
.|||++|++.. .+|..|..+..|+.|+|++|.+.-.++.++.+. |+.|.+..|.+- .+|..+ ..+++|.+.+|.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 99999999974 589999999999999999999998888999998 999999999987 567554 456778899999
Q ss_pred CCCC
Q 013460 256 FDNG 259 (442)
Q Consensus 256 ~~~~ 259 (442)
+...
T Consensus 185 l~vl 188 (264)
T KOG0617|consen 185 LTVL 188 (264)
T ss_pred eeec
Confidence 9754
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=3.7e-13 Score=140.75 Aligned_cols=171 Identities=21% Similarity=0.314 Sum_probs=98.1
Q ss_pred HHhhhhcCCChHHHHHHHHHHHhCCCCCCCCC----CCCCCCCCCC--C------------CCccEEecCCcE-------
Q 013460 31 TLSLVQCTTDSSDVQALQVLYTSLNSPSVLTN----WKGNEGDPCG--E------------SWKGVACEGSAV------- 85 (442)
Q Consensus 31 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~----w~~~~~~~c~--~------------~w~gv~c~~~~l------- 85 (442)
-.|+..+.++++|.+.+..+.+.+..|.++.+ |.+ ..+.|. . .-.-|.|.+..+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~-~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~~~g 130 (754)
T PRK15370 52 YLCHPPETASPEEIKSKFECLRMLAFPAYADNIQYSRGG-ADQYCILSENSQEILSIVFNTEGYTVEGGGKSVTYTRVTE 130 (754)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHhcCCchhhccccccCC-CCcccccCCcchhhheeeecCCceEEecCCCccccccccc
Confidence 34556677899999999999999998887666 875 345663 1 112245544444
Q ss_pred --------------------------------------------------EEEEeCCCCCCcccchhccCCCCCCEEEcc
Q 013460 86 --------------------------------------------------VSIDISGLGLSGTMGYLLSDLLSLRKFDLS 115 (442)
Q Consensus 86 --------------------------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 115 (442)
..|+++++.++. +|..+. ++|+.|+|+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls 207 (754)
T PRK15370 131 SEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT-IPACIP--EQITTLILD 207 (754)
T ss_pred ccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc-CCcccc--cCCcEEEec
Confidence 445555555442 233222 346666666
Q ss_pred CCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCch
Q 013460 116 GNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPN 195 (442)
Q Consensus 116 ~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 195 (442)
+|.|+ .+|..+..+|++|++++|+++ .+|..+. .+|+.|+|++|++. .+|..+. .+|+.|+|++|+|+ .+|.
T Consensus 208 ~N~Lt-sLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~ 279 (754)
T PRK15370 208 NNELK-SLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPE 279 (754)
T ss_pred CCCCC-cCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cccc
Confidence 66666 344444456666666666665 3444332 24666666666665 3444332 35666666666666 3454
Q ss_pred hccCCCCCCEEEcccCcCCc
Q 013460 196 SFISLSNISSLYLQNNQVTG 215 (442)
Q Consensus 196 ~l~~l~~L~~L~Ls~N~l~~ 215 (442)
.+. ++|+.|+|++|+|++
T Consensus 280 ~l~--~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 280 NLP--EELRYLSVYDNSIRT 297 (754)
T ss_pred ccC--CCCcEEECCCCcccc
Confidence 442 356666666666654
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=3.6e-13 Score=140.87 Aligned_cols=163 Identities=20% Similarity=0.300 Sum_probs=103.4
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEccc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR 162 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (442)
.+++.|+|++|+++. +|..+. .+|++|++++|.|+ .+|..++.+|+.|+|++|.+. .+|..+. .+|+.|+|++
T Consensus 199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLPDTIQEMELSINRIT-ELPERLP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhhccccEEECcCCccC-cCChhHh--CCCCEEECcC
Confidence 578889999998884 444443 47888888888887 466666677888888888887 5666554 4678888888
Q ss_pred CcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccC-------------------CCCCCEEEcccCcCCccCccCCCC
Q 013460 163 NSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFIS-------------------LSNISSLYLQNNQVTGSLNVFSGL 223 (442)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-------------------l~~L~~L~Ls~N~l~~~~~~~~~l 223 (442)
|+++. +|..+. .+|+.|+|++|+|++ +|..+.. .++|+.|++++|.+++.+..+. -
T Consensus 272 N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~-~ 346 (754)
T PRK15370 272 NKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP-P 346 (754)
T ss_pred CccCc-cccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhc-C
Confidence 88773 555442 467777777777773 4433220 1345555555555554322221 1
Q ss_pred CccEEEeecccCcccCChh-ccccccccccCCcCCC
Q 013460 224 PLTTLNVANNHFSGWIPRE-LISIRTFIYDGNSFDN 258 (442)
Q Consensus 224 ~L~~L~ls~N~l~~~~p~~-~~~l~~l~~~~n~~~~ 258 (442)
.|+.|++++|+|+. +|.. ..+|+.|++++|.+..
T Consensus 347 sL~~L~Ls~N~L~~-LP~~lp~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 347 ELQVLDVSKNQITV-LPETLPPTITTLDVSRNALTN 381 (754)
T ss_pred cccEEECCCCCCCc-CChhhcCCcCEEECCCCcCCC
Confidence 26777777777663 3432 3456677777776653
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.39 E-value=3.2e-15 Score=138.80 Aligned_cols=168 Identities=24% Similarity=0.360 Sum_probs=133.8
Q ss_pred cEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc-CCCcEEEccCCcCCCCccccccCCCCCCEEEccc
Q 013460 84 AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP-PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR 162 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (442)
.+..++..+|+++ .+|+.+.++.+|..|++.+|++....|..+. +.|+.||...|.+. .+|+.++.|.+|.-|+|..
T Consensus 138 ~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~ 215 (565)
T KOG0472|consen 138 DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRR 215 (565)
T ss_pred hhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhh
Confidence 5666677777776 4567778888888888888888866665555 88888998888887 7888899999999999999
Q ss_pred CcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhcc-CCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccCC
Q 013460 163 NSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFI-SLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWIP 240 (442)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~p 240 (442)
|++. .+| .|..+..|.+|+++.|++. .+|.... ++.+|..|||.+|+++..+..+.-+. |..||+|+|.|++ .|
T Consensus 216 Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~-Lp 291 (565)
T KOG0472|consen 216 NKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS-LP 291 (565)
T ss_pred cccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc-CC
Confidence 9987 456 6888888888888888888 6776665 88889999999999988887777777 8899999999985 45
Q ss_pred hhccc--cccccccCCcCC
Q 013460 241 RELIS--IRTFIYDGNSFD 257 (442)
Q Consensus 241 ~~~~~--l~~l~~~~n~~~ 257 (442)
..+++ +..|.+.|||+.
T Consensus 292 ~sLgnlhL~~L~leGNPlr 310 (565)
T KOG0472|consen 292 YSLGNLHLKFLALEGNPLR 310 (565)
T ss_pred cccccceeeehhhcCCchH
Confidence 55555 456778888875
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.36 E-value=5.3e-12 Score=140.37 Aligned_cols=81 Identities=20% Similarity=0.151 Sum_probs=48.9
Q ss_pred CCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccCChhccccccccccCCc
Q 013460 177 AGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWIPRELISIRTFIYDGNS 255 (442)
Q Consensus 177 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~p~~~~~l~~l~~~~n~ 255 (442)
++|+.|+|++|...+.+|..+.++++|+.|+|++|...+.+|....++ |+.|++++|.....+|....+++.|++.+|.
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG 857 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCC
Confidence 356667777776666777778888888888887765433344322344 6666666655444444444555555555555
Q ss_pred CC
Q 013460 256 FD 257 (442)
Q Consensus 256 ~~ 257 (442)
+.
T Consensus 858 i~ 859 (1153)
T PLN03210 858 IE 859 (1153)
T ss_pred Cc
Confidence 44
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.35 E-value=3.1e-12 Score=133.25 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhCCC
Q 013460 43 DVQALQVLYTSLNS 56 (442)
Q Consensus 43 ~~~~L~~~~~~~~~ 56 (442)
...|...++..+.+
T Consensus 188 r~~a~~r~~~Cl~~ 201 (788)
T PRK15387 188 RAAVVQKMRACLNN 201 (788)
T ss_pred HHHHHHHHHHHhcC
Confidence 34677777777754
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.35 E-value=5.9e-14 Score=142.73 Aligned_cols=127 Identities=25% Similarity=0.350 Sum_probs=107.7
Q ss_pred CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEc
Q 013460 129 PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYL 208 (442)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 208 (442)
+.|+.|++.+|.++...-+.+.++.+|+.|+|++|++.......+.++..|++|+||+|+++ .+|+.+.++..|++|..
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 66788999999999888888899999999999999998655566888999999999999999 78899999999999999
Q ss_pred ccCcCCccCccCCCCC-ccEEEeecccCccc-CChhc--cccccccccCCcCC
Q 013460 209 QNNQVTGSLNVFSGLP-LTTLNVANNHFSGW-IPREL--ISIRTFIYDGNSFD 257 (442)
Q Consensus 209 s~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~-~p~~~--~~l~~l~~~~n~~~ 257 (442)
.+|++...+ .+..++ |+.+|+|.|+++.. +|... .+|++|+++||...
T Consensus 438 hsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 438 HSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred cCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 999988655 777787 99999999999753 44333 58899999999853
No 17
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=1.6e-14 Score=139.75 Aligned_cols=169 Identities=30% Similarity=0.415 Sum_probs=130.9
Q ss_pred cEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 84 AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
-.+..||+.|++. ++|..+..+..|+.+.|..|.+. .+|..+. ..|++|||+.|+++ .+|..++.|+ |+.|.++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 3456677888776 56777777778888888888877 5665555 77888888888888 6777777765 7888888
Q ss_pred cCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCCccEEEeecccCcccCCh
Q 013460 162 RNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLPLTTLNVANNHFSGWIPR 241 (442)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~L~~L~ls~N~l~~~~p~ 241 (442)
+|+++ .+|+.++.+..|..||.+.|++. .+|..++.+.+|+.|++..|++...++.+..++|..||+|.|+++ .+|-
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis-~iPv 228 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS-YLPV 228 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCcee-ecch
Confidence 88887 57777887888888888888888 678888888888888888888888887777888888888888887 5675
Q ss_pred hccc---cccccccCCcCCCC
Q 013460 242 ELIS---IRTFIYDGNSFDNG 259 (442)
Q Consensus 242 ~~~~---l~~l~~~~n~~~~~ 259 (442)
.|.+ |+.|.+.+|++...
T Consensus 229 ~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhhhhhheeeeeccCCCCCC
Confidence 5544 55666888888753
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.35 E-value=5.2e-12 Score=131.66 Aligned_cols=161 Identities=24% Similarity=0.385 Sum_probs=78.0
Q ss_pred ecCCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 80 CEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 80 c~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
|....-..|+|++++++ .+|..+. .+|+.|++.+|+|+. +|. +.++|++|+|++|+|+ .+|.. .++|+.|+
T Consensus 198 Cl~~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~-lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~ 268 (788)
T PRK15387 198 CLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA-LPPELRTLEVSGNQLT-SLPVL---PPGLLELS 268 (788)
T ss_pred HhcCCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC-CCCCCcEEEecCCccC-cccCc---ccccceee
Confidence 33334445666666665 3444443 256666666666663 332 2356666666666666 33322 23445555
Q ss_pred cccCcCCCchhhhhc-----------------CCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCC
Q 013460 160 VSRNSLTQSIGDIFG-----------------NLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSG 222 (442)
Q Consensus 160 L~~n~l~~~~p~~~~-----------------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 222 (442)
+++|.++. +|..+. .+++|+.|+|++|+|++ +|... .+|+.|++++|++++.+. +.
T Consensus 269 Ls~N~L~~-Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~LP~-lp- 341 (788)
T PRK15387 269 IFSNPLTH-LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTSLPT-LP- 341 (788)
T ss_pred ccCCchhh-hhhchhhcCEEECcCCccccccccccccceeECCCCcccc-CCCCc---ccccccccccCccccccc-cc-
Confidence 55554442 222110 12445555555555553 33211 234444445554443221 00
Q ss_pred CCccEEEeecccCcccCChhccccccccccCCcCC
Q 013460 223 LPLTTLNVANNHFSGWIPRELISIRTFIYDGNSFD 257 (442)
Q Consensus 223 l~L~~L~ls~N~l~~~~p~~~~~l~~l~~~~n~~~ 257 (442)
-.|+.|+|++|+|++ +|....++..|++++|.+.
T Consensus 342 ~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~ 375 (788)
T PRK15387 342 SGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLT 375 (788)
T ss_pred cccceEecCCCccCC-CCCCCcccceehhhccccc
Confidence 016677777777764 4444445555555555554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.33 E-value=3.7e-13 Score=129.31 Aligned_cols=176 Identities=26% Similarity=0.359 Sum_probs=126.5
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCC---CCEEEccCCCCCCCCCC----Cc---cCCCcEEEccCCcCCCC----ccc
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLS---LRKFDLSGNSIHDTIPY----QL---PPNLTSLNLASNNFSGN----LPY 147 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~~~p~----~~---~~~L~~L~Ls~n~l~~~----~p~ 147 (442)
..+++.|++++|.+.+..+..+..+.. |++|++++|.+.+.... .+ .++|+.|++++|.+++. ++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 358999999999998766666666665 99999999988742111 11 26889999999998843 344
Q ss_pred cccCCCCCCEEEcccCcCCCc----hhhhhcCCCCCcEEeCCCCCCCCC----CchhccCCCCCCEEEcccCcCCcc-Cc
Q 013460 148 SIASMVSLSYLNVSRNSLTQS----IGDIFGNLAGLATLDLSFNNFSGD----LPNSFISLSNISSLYLQNNQVTGS-LN 218 (442)
Q Consensus 148 ~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~-~~ 218 (442)
.+..+.+|++|+|++|.+++. ++..+..+++|++|+|++|.+++. ++..+..+++|++|++++|.+++. +.
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 566778899999999998843 334456667999999999998754 334566788899999999998852 11
Q ss_pred ----cCC-CCC-ccEEEeecccCccc----CC---hhccccccccccCCcCC
Q 013460 219 ----VFS-GLP-LTTLNVANNHFSGW----IP---RELISIRTFIYDGNSFD 257 (442)
Q Consensus 219 ----~~~-~l~-L~~L~ls~N~l~~~----~p---~~~~~l~~l~~~~n~~~ 257 (442)
.+. ... |+.|++++|.++.. +. ..+.+++.+++++|.+.
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 111 123 99999999988721 22 23356788888888886
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.32 E-value=9.4e-13 Score=126.45 Aligned_cols=175 Identities=22% Similarity=0.235 Sum_probs=122.1
Q ss_pred CcEEEEEeCCCCCC------cccchhccCCCCCCEEEccCCCCCCCCCCCcc--C---CCcEEEccCCcCCC----Cccc
Q 013460 83 SAVVSIDISGLGLS------GTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--P---NLTSLNLASNNFSG----NLPY 147 (442)
Q Consensus 83 ~~l~~L~L~~n~l~------~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~---~L~~L~Ls~n~l~~----~~p~ 147 (442)
..++.|+++++.+. ..++..+..+++|+.|++++|.+.+..+..+. . +|++|++++|.+++ .+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 45788888887776 23455677788899999988888754444333 3 38889998888873 2334
Q ss_pred cccCC-CCCCEEEcccCcCCCc----hhhhhcCCCCCcEEeCCCCCCCCC----CchhccCCCCCCEEEcccCcCCccC-
Q 013460 148 SIASM-VSLSYLNVSRNSLTQS----IGDIFGNLAGLATLDLSFNNFSGD----LPNSFISLSNISSLYLQNNQVTGSL- 217 (442)
Q Consensus 148 ~~~~l-~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~- 217 (442)
.+..+ ++|+.|+|++|.+++. ++..+..+.+|++|++++|.+++. ++..+..+++|+.|+|++|.+++..
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 45566 7889999999888843 344566677888999998888753 3344556678899999988886432
Q ss_pred ----ccCCCCC-ccEEEeecccCcccCC----hh----ccccccccccCCcCC
Q 013460 218 ----NVFSGLP-LTTLNVANNHFSGWIP----RE----LISIRTFIYDGNSFD 257 (442)
Q Consensus 218 ----~~~~~l~-L~~L~ls~N~l~~~~p----~~----~~~l~~l~~~~n~~~ 257 (442)
..+..++ |++|++++|.+++... .. ...++.|++.+|.+.
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 2344555 8889999888875322 12 256778888888764
No 21
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.25 E-value=4.9e-13 Score=124.44 Aligned_cols=170 Identities=28% Similarity=0.449 Sum_probs=122.0
Q ss_pred CcEEEEEeCCCCCCcccchhccCCC--CCCEEEccCCCCCCCCCCCcc---CCCcEEEccCCcCCCCccccccCCCCCCE
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLL--SLRKFDLSGNSIHDTIPYQLP---PNLTSLNLASNNFSGNLPYSIASMVSLSY 157 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~p~~~~---~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 157 (442)
-+.+.|++++-+++....+.|..-. -+...+++.|++. ++|..+. ..++.+.+++|.++ .+|..++.+++|..
T Consensus 362 i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~ 439 (565)
T KOG0472|consen 362 ITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTF 439 (565)
T ss_pred hhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhccee
Confidence 3567788888888754444333222 2677888888887 5666665 33444556666655 77778888888888
Q ss_pred EEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCcc-CCCCC-ccEEEeecccC
Q 013460 158 LNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNV-FSGLP-LTTLNVANNHF 235 (442)
Q Consensus 158 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~l~-L~~L~ls~N~l 235 (442)
|+|++|-+. .+|..++.+..|+.||++.|+|. .+|..+..+..|+.+-.++|++....+. +..+. |..|||.+|.+
T Consensus 440 L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl 517 (565)
T KOG0472|consen 440 LDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL 517 (565)
T ss_pred eecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch
Confidence 888888776 57777888888888888888887 7788777777777777777888776654 66676 88888888888
Q ss_pred cccCChh---ccccccccccCCcCC
Q 013460 236 SGWIPRE---LISIRTFIYDGNSFD 257 (442)
Q Consensus 236 ~~~~p~~---~~~l~~l~~~~n~~~ 257 (442)
. .+|.. +.+++.|.+.||+|.
T Consensus 518 q-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 518 Q-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred h-hCChhhccccceeEEEecCCccC
Confidence 7 44544 445566778888886
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.21 E-value=1e-10 Score=130.18 Aligned_cols=172 Identities=17% Similarity=0.169 Sum_probs=124.5
Q ss_pred CcEEEEEeCCCC------CCcccchhccCCC-CCCEEEccCCCCCCCCCCCcc-CCCcEEEccCCcCCCCccccccCCCC
Q 013460 83 SAVVSIDISGLG------LSGTMGYLLSDLL-SLRKFDLSGNSIHDTIPYQLP-PNLTSLNLASNNFSGNLPYSIASMVS 154 (442)
Q Consensus 83 ~~l~~L~L~~n~------l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~ 154 (442)
.+++.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+. .+|+.|+|++|.+. .++..+..+++
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~~~~L~~L~L~~s~l~-~L~~~~~~l~~ 635 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFRPENLVKLQMQGSKLE-KLWDGVHSLTG 635 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCCccCCcEEECcCcccc-ccccccccCCC
Confidence 355566664432 2234566666654 5888888888776 5565555 88889999988887 56777788889
Q ss_pred CCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecc
Q 013460 155 LSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANN 233 (442)
Q Consensus 155 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N 233 (442)
|+.|+|++|.....+|. +..+++|++|+|++|.....+|..+.++++|+.|++++|.....+|....+. |+.|++++|
T Consensus 636 Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC 714 (1153)
T ss_pred CCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCC
Confidence 99999988765556664 7788889999998887666888888888999999998876544454333555 888888888
Q ss_pred cCcccCChhccccccccccCCcCC
Q 013460 234 HFSGWIPRELISIRTFIYDGNSFD 257 (442)
Q Consensus 234 ~l~~~~p~~~~~l~~l~~~~n~~~ 257 (442)
...+.+|....+++.|++.+|.+.
T Consensus 715 ~~L~~~p~~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 715 SRLKSFPDISTNISWLDLDETAIE 738 (1153)
T ss_pred CCccccccccCCcCeeecCCCccc
Confidence 766666766667777777777654
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.16 E-value=1.7e-12 Score=132.30 Aligned_cols=151 Identities=22% Similarity=0.308 Sum_probs=82.8
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNV 160 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (442)
.++++++++.|++++. |.++..+.+|+.|++.+|+|. .+|..+. .+|+.|.+..|.+. .+|+...++..|++|+|
T Consensus 241 ~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhhcc-hHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 3567777777777654 377888888888888888775 3444333 55555555555555 44555555666666666
Q ss_pred ccCcCCCchhhhh-------------------------cCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCc
Q 013460 161 SRNSLTQSIGDIF-------------------------GNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTG 215 (442)
Q Consensus 161 ~~n~l~~~~p~~~-------------------------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 215 (442)
..|+|....+..+ ..++.|+.|+|.+|.++...-..+.++++|+.|+|++|++..
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 6666542211110 012234445555555554444445555555555555555554
Q ss_pred cCc-cCCCCC-ccEEEeecccCc
Q 013460 216 SLN-VFSGLP-LTTLNVANNHFS 236 (442)
Q Consensus 216 ~~~-~~~~l~-L~~L~ls~N~l~ 236 (442)
.+. .+.++. |+.|+||+|.++
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh
Confidence 332 334444 555555555554
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=3.3e-11 Score=103.64 Aligned_cols=106 Identities=26% Similarity=0.315 Sum_probs=24.9
Q ss_pred CCCCEEEccCCCCCCCCCCCc-cCCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCC
Q 013460 107 LSLRKFDLSGNSIHDTIPYQL-PPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLS 185 (442)
Q Consensus 107 ~~L~~L~l~~n~l~~~~p~~~-~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 185 (442)
..+++|+|++|.|+..-.-.. ..+|+.|+|++|.++.. +.+..++.|++|++++|+|+...+.....+++|++|+|+
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 345555555555552211110 13455555555555422 134455556666666666554322212245556666666
Q ss_pred CCCCCCC-CchhccCCCCCCEEEcccCcCC
Q 013460 186 FNNFSGD-LPNSFISLSNISSLYLQNNQVT 214 (442)
Q Consensus 186 ~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~ 214 (442)
+|+|... .-..+..+++|+.|+|.+|.++
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6655421 1133445555555555555554
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.13 E-value=8.8e-11 Score=122.16 Aligned_cols=107 Identities=27% Similarity=0.372 Sum_probs=90.4
Q ss_pred CCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEee
Q 013460 154 SLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVA 231 (442)
Q Consensus 154 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls 231 (442)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|++.|.+|..+..+++|+.|+|++|+++|.+| .+..++ |+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788999999998888889899999999999999998899888999999999999999988776 577777 9999999
Q ss_pred cccCcccCChhccc----cccccccCCcCCCCC
Q 013460 232 NNHFSGWIPRELIS----IRTFIYDGNSFDNGP 260 (442)
Q Consensus 232 ~N~l~~~~p~~~~~----l~~l~~~~n~~~~~~ 260 (442)
+|.++|.+|..+.. +..+++.+|+..|+.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCC
Confidence 99999999876643 346788899888863
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.6e-11 Score=114.34 Aligned_cols=176 Identities=22% Similarity=0.262 Sum_probs=130.9
Q ss_pred CCcEEEEEeCCCCCCcc--cchhccCCCCCCEEEccCCCCCCCCCCCc---cCCCcEEEccCCcCCCC-ccccccCCCCC
Q 013460 82 GSAVVSIDISGLGLSGT--MGYLLSDLLSLRKFDLSGNSIHDTIPYQL---PPNLTSLNLASNNFSGN-LPYSIASMVSL 155 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~p~~~---~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L 155 (442)
..+++.|||+.|-+... +-.....|++|+.|+|+.|.+.-...... .++|+.|.|+.|.++.. +-..+..+++|
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 47999999999988753 44677889999999999999874333222 28999999999999833 33344578999
Q ss_pred CEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCc--hhccCCCCCCEEEcccCcCCccC-ccC------CCCC-c
Q 013460 156 SYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLP--NSFISLSNISSLYLQNNQVTGSL-NVF------SGLP-L 225 (442)
Q Consensus 156 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~-~~~------~~l~-L 225 (442)
..|+|..|..-..-......+..|+.|||++|++-. .+ ...+.++.|+.|+++.+.+...- +.. ..++ |
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 999999996333333344557889999999999874 33 44678999999999999987632 222 2334 9
Q ss_pred cEEEeecccCcccCC----hhccccccccccCCcCCC
Q 013460 226 TTLNVANNHFSGWIP----RELISIRTFIYDGNSFDN 258 (442)
Q Consensus 226 ~~L~ls~N~l~~~~p----~~~~~l~~l~~~~n~~~~ 258 (442)
++|+++.|++..+-. ..+.++..|.+..|+++.
T Consensus 304 ~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 304 EYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred eeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 999999999975532 345667777788888863
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=3.9e-12 Score=123.37 Aligned_cols=149 Identities=26% Similarity=0.368 Sum_probs=103.8
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc-CCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP-PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
..|..+.|+.|.+. .+|..+.++..|.+|||+.|+++ .+|..++ --|+.|-+++|+++ .+|+.++.+..|..||.+
T Consensus 98 ~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 98 VSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred HHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEecCccc-cCCcccccchhHHHhhhh
Confidence 44556666666665 56677777777888888888777 4554444 66777777777777 677777777777777777
Q ss_pred cCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcc
Q 013460 162 RNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSG 237 (442)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~ 237 (442)
.|.+. .+|..++.+.+|+.|++..|++. .+|..+..| .|..||+++|+++..+-.|..+. |++|-|.+|.+..
T Consensus 175 ~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 175 KNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 77776 45666777777777777777776 556666644 36677777777776655677776 7777777777763
No 28
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.06 E-value=1.2e-10 Score=112.79 Aligned_cols=46 Identities=39% Similarity=0.688 Sum_probs=43.8
Q ss_pred cccceeHHHHHhhcCCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 396 TATSYTVASLQTATNSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 396 ~~~~f~~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
..+.|+|+||.+||++|+++++||+||||.||||.++||+.|||||
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~ 106 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKR 106 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEE
Confidence 4567999999999999999999999999999999999999999996
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=1.7e-10 Score=99.22 Aligned_cols=105 Identities=32% Similarity=0.478 Sum_probs=42.4
Q ss_pred CCCcEEEccCCcCCCCcccccc-CCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhc-cCCCCCCEE
Q 013460 129 PNLTSLNLASNNFSGNLPYSIA-SMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSF-ISLSNISSL 206 (442)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L 206 (442)
..+++|+|.+|.|+. + +.++ .+.+|+.|+|++|.|+.. +.+..++.|++|++++|+++. +...+ ..+++|+.|
T Consensus 19 ~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred ccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence 678999999999984 3 3455 578999999999999854 357789999999999999994 44444 468999999
Q ss_pred EcccCcCCcc--CccCCCCC-ccEEEeecccCccc
Q 013460 207 YLQNNQVTGS--LNVFSGLP-LTTLNVANNHFSGW 238 (442)
Q Consensus 207 ~Ls~N~l~~~--~~~~~~l~-L~~L~ls~N~l~~~ 238 (442)
+|++|++... +..+..++ |+.|+|.+|+++..
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 9999999763 34566777 99999999999854
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.03 E-value=1.9e-10 Score=113.90 Aligned_cols=170 Identities=31% Similarity=0.460 Sum_probs=93.9
Q ss_pred cEEEEEeCCCCCCcccchhccCCC-CCCEEEccCCCCCCC-CCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 84 AVVSIDISGLGLSGTMGYLLSDLL-SLRKFDLSGNSIHDT-IPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~-~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
.++.|++.+|+++. ++.....+. +|+.|++++|.+... .+....++|+.|++++|.++ .+|.....++.|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCccccc-CccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheecc
Confidence 45666666666553 333344443 566666666666532 12233366666666666666 344444455666666666
Q ss_pred cCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccCC
Q 013460 162 RNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWIP 240 (442)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~p 240 (442)
+|++. .+|.....+..|++|.+++|.+. ..+..+.++.++..|.+.+|++...+..+..+. ++.|++++|.++...+
T Consensus 195 ~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 195 GNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred CCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc
Confidence 66665 33443334444666666666433 344555566666666666666655444455555 7777777777764433
Q ss_pred -hhccccccccccCCcCC
Q 013460 241 -RELISIRTFIYDGNSFD 257 (442)
Q Consensus 241 -~~~~~l~~l~~~~n~~~ 257 (442)
..+.+++.|++++|.+.
T Consensus 273 ~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 273 LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccccCccCEEeccCcccc
Confidence 23445566666666664
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=3e-11 Score=108.74 Aligned_cols=123 Identities=29% Similarity=0.393 Sum_probs=54.9
Q ss_pred CCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCC
Q 013460 108 SLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLS 185 (442)
Q Consensus 108 ~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 185 (442)
.|++|||++|.|+ .+..... +.++.|++++|.+... ..+..+++|+.|||++|.++. +..+-..+.++++|.|+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehh
Confidence 3455555555554 2222222 4555555555555421 124444555555555555442 22233344445555555
Q ss_pred CCCCCCCCchhccCCCCCCEEEcccCcCCcc--CccCCCCC-ccEEEeecccCc
Q 013460 186 FNNFSGDLPNSFISLSNISSLYLQNNQVTGS--LNVFSGLP-LTTLNVANNHFS 236 (442)
Q Consensus 186 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~~~~~~l~-L~~L~ls~N~l~ 236 (442)
.|.+.. -+.+..+-+|..||+++|++... ...++.+| |+.+.|.+|.+.
T Consensus 361 ~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 QNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 554431 13344444555555555555432 22344444 444555555444
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.92 E-value=6.7e-10 Score=110.07 Aligned_cols=154 Identities=32% Similarity=0.445 Sum_probs=129.1
Q ss_pred cEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCC-ccCCCcEEEccCCcCCCCccccccCCCCCCEEEccc
Q 013460 84 AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQ-LPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR 162 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (442)
+++.|++++|.+.. +|..+..+++|+.|++++|++....+.. ..+.|+.|++++|.++ .+|..+.....|++|.+++
T Consensus 141 nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchhh-hhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcC
Confidence 79999999999974 4467899999999999999999544433 3499999999999999 6777666677799999999
Q ss_pred CcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccCCh
Q 013460 163 NSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWIPR 241 (442)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~p~ 241 (442)
|.+. ..+..+.++.++..|.+.+|++. .++..+..+++|+.|++++|.++.... +..+. ++.|++++|.+....|.
T Consensus 219 N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 219 NSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred Ccce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence 9644 35567889999999999999998 457888999999999999999997666 66666 99999999999977764
Q ss_pred h
Q 013460 242 E 242 (442)
Q Consensus 242 ~ 242 (442)
.
T Consensus 296 ~ 296 (394)
T COG4886 296 I 296 (394)
T ss_pred h
Confidence 3
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=1.2e-10 Score=104.81 Aligned_cols=131 Identities=23% Similarity=0.246 Sum_probs=105.9
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEccc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR 162 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (442)
..++++||++|.|+ .+.+++.-++.++.|+++.|.|.....-...++|+.|||++|.++. +-..-..+.++++|.|+.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhh
Confidence 46889999999987 4566778889999999999999855444444999999999999983 333334678899999999
Q ss_pred CcCCCchhhhhcCCCCCcEEeCCCCCCCCC-CchhccCCCCCCEEEcccCcCCccC
Q 013460 163 NSLTQSIGDIFGNLAGLATLDLSFNNFSGD-LPNSFISLSNISSLYLQNNQVTGSL 217 (442)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~ 217 (442)
|.+... ..+..+-+|..||+++|+|... -...+++++.|++|.|.+|.+.+.+
T Consensus 362 N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 362 NKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 998643 3467788999999999999732 2356889999999999999998765
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.1e-09 Score=77.40 Aligned_cols=58 Identities=45% Similarity=0.581 Sum_probs=27.0
Q ss_pred CCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCc
Q 013460 155 LSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQ 212 (442)
Q Consensus 155 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 212 (442)
|++|++++|+++...+..|..+++|++|++++|.++...|..|..+++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4444444444443333444444444444444444443333444444555555554444
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=1.6e-09 Score=76.57 Aligned_cols=61 Identities=43% Similarity=0.573 Sum_probs=51.1
Q ss_pred CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCC
Q 013460 129 PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNF 189 (442)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 189 (442)
++|++|++++|+++...+..|..+++|++|++++|+++...+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677888888888866667888899999999999999888888889999999999998875
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=8e-10 Score=104.43 Aligned_cols=175 Identities=22% Similarity=0.240 Sum_probs=128.3
Q ss_pred CcEEEEEeCCCCCCcccc-hhccCCCCCCEEEccCCCCCCCCCC-Ccc---CCCcEEEccCCcCCCCccccc-cCCCCCC
Q 013460 83 SAVVSIDISGLGLSGTMG-YLLSDLLSLRKFDLSGNSIHDTIPY-QLP---PNLTSLNLASNNFSGNLPYSI-ASMVSLS 156 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~-~~~---~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~ 156 (442)
..|+.+.|.++.+..... .....|++++.|||+.|-+..-.+- .+. ++|+.|+|+.|.+.-...... ..+++|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 467888888887653211 5778899999999999988743221 111 899999999999873322222 2578899
Q ss_pred EEEcccCcCCCc-hhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccC--ccCCCCC-ccEEEeec
Q 013460 157 YLNVSRNSLTQS-IGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSL--NVFSGLP-LTTLNVAN 232 (442)
Q Consensus 157 ~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~l~-L~~L~ls~ 232 (442)
.|.|+.|.++.. +-.....+++|+.|+|..|...+.-......+..|+.|||++|++.... +....++ |..|+++.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 999999999843 2233456899999999999643333344556788999999999997654 5677778 99999999
Q ss_pred ccCccc-CC--------hhccccccccccCCcCC
Q 013460 233 NHFSGW-IP--------RELISIRTFIYDGNSFD 257 (442)
Q Consensus 233 N~l~~~-~p--------~~~~~l~~l~~~~n~~~ 257 (442)
+.++.. .| ..|.+++.|++..|++.
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 988753 22 23678899999999884
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.73 E-value=1.6e-09 Score=101.15 Aligned_cols=128 Identities=28% Similarity=0.357 Sum_probs=91.8
Q ss_pred CCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEccc-CcCCCchhhhhcCCCCCcEEeC
Q 013460 108 SLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR-NSLTQSIGDIFGNLAGLATLDL 184 (442)
Q Consensus 108 ~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L 184 (442)
.-..++|..|+|+..-+..|. ++|+.|||++|+|+.+-|..|.++.+|.+|-+-+ |+|+......|.++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456677888888765555665 7788888888888877777888777776665544 7777666667778888888888
Q ss_pred CCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccC
Q 013460 185 SFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHF 235 (442)
Q Consensus 185 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l 235 (442)
.-|++.-...+.|..+++|..|.+-+|.+..... .+..+. ++.+++..|.+
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence 8888776666777788888888887777765443 455554 66666666664
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.63 E-value=1.9e-09 Score=107.70 Aligned_cols=127 Identities=27% Similarity=0.355 Sum_probs=88.3
Q ss_pred CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEc
Q 013460 129 PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYL 208 (442)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 208 (442)
-.|...+.+.|.+. .+..++.-++.|+.|||++|+++.. +.+..++.|++|||++|.++ .+|.--..--+|+.|.|
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence 45667777788777 5556677778888888888888754 36778888888888888887 44432222224888888
Q ss_pred ccCcCCccCccCCCCC-ccEEEeecccCcccC---C-hhccccccccccCCcCCCCC
Q 013460 209 QNNQVTGSLNVFSGLP-LTTLNVANNHFSGWI---P-RELISIRTFIYDGNSFDNGP 260 (442)
Q Consensus 209 s~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~---p-~~~~~l~~l~~~~n~~~~~~ 260 (442)
++|.++.. ..+.++. |+.||+++|-|.+.- | ..+..|..|.+.|||+.|.+
T Consensus 240 rnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 240 RNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 88887642 2344555 888888888877632 2 33566777888888887743
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.60 E-value=7.6e-09 Score=95.39 Aligned_cols=175 Identities=19% Similarity=0.272 Sum_probs=127.7
Q ss_pred CcEEEEEeCCCCCCccc----chhccCCCCCCEEEccCCCCCCCCCCC-------------c--cCCCcEEEccCCcCCC
Q 013460 83 SAVVSIDISGLGLSGTM----GYLLSDLLSLRKFDLSGNSIHDTIPYQ-------------L--PPNLTSLNLASNNFSG 143 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~p~~-------------~--~~~L~~L~Ls~n~l~~ 143 (442)
++++.||||+|-+.-.- ...+..+..|++|.|.+|.+.-.-... . .+.|+++...+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 48999999999986432 345677889999999999886221111 1 1789999999998863
Q ss_pred C----ccccccCCCCCCEEEcccCcCCCc----hhhhhcCCCCCcEEeCCCCCCCCC----CchhccCCCCCCEEEcccC
Q 013460 144 N----LPYSIASMVSLSYLNVSRNSLTQS----IGDIFGNLAGLATLDLSFNNFSGD----LPNSFISLSNISSLYLQNN 211 (442)
Q Consensus 144 ~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N 211 (442)
. +...|...+.|+.+.+..|.|... +-..+..+++|+.|||.+|.|+.. +...+..++.|+.|++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 2 334566778999999999988632 334578899999999999999853 4456778889999999999
Q ss_pred cCCc--cC---ccCCC-CC-ccEEEeecccCcccCC-------hhccccccccccCCcCC
Q 013460 212 QVTG--SL---NVFSG-LP-LTTLNVANNHFSGWIP-------RELISIRTFIYDGNSFD 257 (442)
Q Consensus 212 ~l~~--~~---~~~~~-l~-L~~L~ls~N~l~~~~p-------~~~~~l~~l~~~~n~~~ 257 (442)
.+.. .. ..+.. .+ |+.|.+.+|.++..-. ...+.+..|.+++|.+.
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 9864 22 23333 33 9999999999874211 22556778889999884
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.52 E-value=2e-08 Score=100.03 Aligned_cols=170 Identities=23% Similarity=0.228 Sum_probs=97.7
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
..++..|++.+|.|..... .+..+.+|++|+|++|.|+...+..-.+.|+.|++++|.++.. ..+..+..|+.++++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLS 170 (414)
T ss_pred ccceeeeeccccchhhccc-chhhhhcchheeccccccccccchhhccchhhheeccCcchhc--cCCccchhhhcccCC
Confidence 3577777787777765432 2666777788888888777665555556677778888777632 234446777777777
Q ss_pred cCcCCCchh-hhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCC--CccEEEeecccCccc
Q 013460 162 RNSLTQSIG-DIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGL--PLTTLNVANNHFSGW 238 (442)
Q Consensus 162 ~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l--~L~~L~ls~N~l~~~ 238 (442)
+|++...-+ . ...+.+|+.+++..|.+... ..+..+..+..+++..|.++-.-+..... .|+.+++++|.+...
T Consensus 171 ~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 171 YNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred cchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccc
Confidence 777765433 1 45667777777777776521 22333334444455555554322111111 145666666666532
Q ss_pred --CChhccccccccccCCcCC
Q 013460 239 --IPRELISIRTFIYDGNSFD 257 (442)
Q Consensus 239 --~p~~~~~l~~l~~~~n~~~ 257 (442)
....+..+..+++..|.+.
T Consensus 248 ~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 248 PEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cccccccccccccchhhcccc
Confidence 2233444455555555444
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.39 E-value=3.4e-08 Score=98.37 Aligned_cols=170 Identities=23% Similarity=0.270 Sum_probs=121.6
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCC-CCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIP-YQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
..+..+++..|.+.. +-..+..+.+|+.|++.+|.|..... ....++|++|+|++|.|+... .+..++.|+.|+++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence 455566677776664 22347788899999999999986665 444489999999999998553 35677779999999
Q ss_pred cCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchh-ccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccC
Q 013460 162 RNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNS-FISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWI 239 (442)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~ 239 (442)
+|.|+.. ..+..+..|+.+++++|.+...-+ . ...+.+|+.+++.+|.+...-. +..+. +..+++..|.++..-
T Consensus 149 ~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 149 GNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREIEG-LDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred cCcchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhcccc-hHHHHHHHHhhcccccceecc
Confidence 9999743 346668899999999999984433 2 5778889999999998864322 11222 455588888887544
Q ss_pred Chh-cc--ccccccccCCcCCCC
Q 013460 240 PRE-LI--SIRTFIYDGNSFDNG 259 (442)
Q Consensus 240 p~~-~~--~l~~l~~~~n~~~~~ 259 (442)
+.. .. .++.+++.+|++...
T Consensus 225 ~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 225 GLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred CcccchhHHHHHHhcccCccccc
Confidence 322 22 278888999988743
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.34 E-value=2.3e-08 Score=80.28 Aligned_cols=107 Identities=31% Similarity=0.401 Sum_probs=60.1
Q ss_pred EEEEEeCCCCCCc--ccchhccCCCCCCEEEccCCCCCCCCCCCcc---CCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 85 VVSIDISGLGLSG--TMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP---PNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 85 l~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~---~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
+-.++|+.|.+-. ..+..+.....|...+|++|.+.. .|..+. +.++.|+|++|.|+ .+|..+..|+.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 4455666666542 123344444556666777776662 333332 35566666666666 5565666666666666
Q ss_pred cccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCch
Q 013460 160 VSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPN 195 (442)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 195 (442)
++.|.+. ..|..+..+.+|-.|+..+|.+. ++|-
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~ 140 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDV 140 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcH
Confidence 6666665 34444555666666666666655 4443
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.32 E-value=2.2e-07 Score=85.88 Aligned_cols=131 Identities=23% Similarity=0.316 Sum_probs=64.8
Q ss_pred CcEEEEEeCCCCCCc----ccchhccCCCCCCEEEccCCCC---CCCCCCCcc---------CCCcEEEccCCcCCCCcc
Q 013460 83 SAVVSIDISGLGLSG----TMGYLLSDLLSLRKFDLSGNSI---HDTIPYQLP---------PNLTSLNLASNNFSGNLP 146 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l---~~~~p~~~~---------~~L~~L~Ls~n~l~~~~p 146 (442)
..++.|+|++|.+.. .+...+.+.++|+..++++--. ...+|..+. ++|++|+||.|.|....+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 456777777777652 3445555666666666654321 122332221 466666666666653333
Q ss_pred c----cccCCCCCCEEEcccCcCCCchh-------------hhhcCCCCCcEEeCCCCCCCCC----CchhccCCCCCCE
Q 013460 147 Y----SIASMVSLSYLNVSRNSLTQSIG-------------DIFGNLAGLATLDLSFNNFSGD----LPNSFISLSNISS 205 (442)
Q Consensus 147 ~----~~~~l~~L~~L~L~~n~l~~~~p-------------~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~ 205 (442)
. .+.++..|++|+|.+|.+.-.-- .....-+.|++++..+|++... +...|...+.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 2 23345566666666665541111 1122234555555555555422 1123334445555
Q ss_pred EEcccCcC
Q 013460 206 LYLQNNQV 213 (442)
Q Consensus 206 L~Ls~N~l 213 (442)
+.+..|.+
T Consensus 190 vr~~qN~I 197 (382)
T KOG1909|consen 190 VRLSQNGI 197 (382)
T ss_pred EEEecccc
Confidence 55555544
No 44
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.24 E-value=2.2e-06 Score=55.56 Aligned_cols=39 Identities=49% Similarity=1.026 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHhCCC-C-CCCCCCCCCC-CCCCCCCCccEEec
Q 013460 41 SSDVQALQVLYTSLNS-P-SVLTNWKGNE-GDPCGESWKGVACE 81 (442)
Q Consensus 41 ~~~~~~L~~~~~~~~~-~-~~l~~w~~~~-~~~c~~~w~gv~c~ 81 (442)
++|.+||+.||.++.. + ..+.+|.... .+|| +|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C--~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC--SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC--CSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe--eeccEEeC
Confidence 5799999999999985 4 5899999764 7889 89999995
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=1.5e-07 Score=85.19 Aligned_cols=175 Identities=22% Similarity=0.269 Sum_probs=110.7
Q ss_pred CcEEEEEeCCCCCCc--ccchhccCCCCCCEEEccCCCCCCCCCCC-cc-CCCcEEEccCCcCCCC-ccccccCCCCCCE
Q 013460 83 SAVVSIDISGLGLSG--TMGYLLSDLLSLRKFDLSGNSIHDTIPYQ-LP-PNLTSLNLASNNFSGN-LPYSIASMVSLSY 157 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~-~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~ 157 (442)
++|+.+||.+|.|+. .+...+.+|+.|++|+|+.|++...|... ++ .+|++|-|.+..+... ....+..++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 689999999999985 46678889999999999999998655443 34 8999999999888743 3345667888899
Q ss_pred EEcccCcCCCchh--hhhcCC-CCCcEEeCCCCCCCC--CCchhccCCCCCCEEEcccCcCCccC--ccCCCCC-ccEEE
Q 013460 158 LNVSRNSLTQSIG--DIFGNL-AGLATLDLSFNNFSG--DLPNSFISLSNISSLYLQNNQVTGSL--NVFSGLP-LTTLN 229 (442)
Q Consensus 158 L~L~~n~l~~~~p--~~~~~l-~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~l~-L~~L~ 229 (442)
|+++.|++....- +..... +.+.+|++..|.... .+-.--.-++++..+-+..|.+...- ..+..++ +..|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 9999885432110 011111 233344433332210 00011123456666777777665432 2334444 56778
Q ss_pred eecccCcccCC----hhccccccccccCCcCC
Q 013460 230 VANNHFSGWIP----RELISIRTFIYDGNSFD 257 (442)
Q Consensus 230 ls~N~l~~~~p----~~~~~l~~l~~~~n~~~ 257 (442)
|+.|+|..+-. ..|..+..|+...||+.
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 88888876543 23566777777887775
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.23 E-value=1.3e-08 Score=101.98 Aligned_cols=123 Identities=24% Similarity=0.252 Sum_probs=91.7
Q ss_pred CCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCC
Q 013460 108 SLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLS 185 (442)
Q Consensus 108 ~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 185 (442)
.|...+.+.|.+. .....+. +.|+.|||++|+++... .+..++.|++|||++|.+.. +|..-..-..|+.|+|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhhhheeeeec
Confidence 3566666677665 2222332 88999999999998443 78899999999999999984 44321112359999999
Q ss_pred CCCCCCCCchhccCCCCCCEEEcccCcCCccC--ccCCCCC-ccEEEeecccCc
Q 013460 186 FNNFSGDLPNSFISLSNISSLYLQNNQVTGSL--NVFSGLP-LTTLNVANNHFS 236 (442)
Q Consensus 186 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~l~-L~~L~ls~N~l~ 236 (442)
+|.++.. ..+.++.+|+.||+++|-|.+.- ..+..+. |+.|+|.+|.+-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999843 45789999999999999998743 3455555 999999999985
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=4.2e-08 Score=78.73 Aligned_cols=81 Identities=22% Similarity=0.427 Sum_probs=35.4
Q ss_pred CCcEEEccCCcCCCCcccccc-CCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEc
Q 013460 130 NLTSLNLASNNFSGNLPYSIA-SMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYL 208 (442)
Q Consensus 130 ~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 208 (442)
.|+..+|++|.+. ..|+.|. ..+.+++|+|++|.|+ .+|..+..++.|+.|+++.|.|. ..|..+..+.+|..|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 3444455555554 2222222 2334444445554444 23444444444444444444444 33444444444444444
Q ss_pred ccCcC
Q 013460 209 QNNQV 213 (442)
Q Consensus 209 s~N~l 213 (442)
.+|.+
T Consensus 131 ~~na~ 135 (177)
T KOG4579|consen 131 PENAR 135 (177)
T ss_pred CCCcc
Confidence 44443
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=9.9e-08 Score=86.33 Aligned_cols=152 Identities=24% Similarity=0.272 Sum_probs=102.5
Q ss_pred CcEEEEEeCCCCCCc-ccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCc-CCCC-ccccccCCCCCCE
Q 013460 83 SAVVSIDISGLGLSG-TMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNN-FSGN-LPYSIASMVSLSY 157 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~-l~~~-~p~~~~~l~~L~~ 157 (442)
++|+.|||++..|+. .+-..++.+.+|+.|.|.++++.+.+...+. .+|+.|+|+.+. ++.. ..--+.+++.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 468999999988873 4566788899999999999999988777776 889999998863 4311 2223567899999
Q ss_pred EEcccCcCCCchhh-hhcCC-CCCcEEeCCCCCC---CCCCchhccCCCCCCEEEcccCcC-Cc-cCccCCCCC-ccEEE
Q 013460 158 LNVSRNSLTQSIGD-IFGNL-AGLATLDLSFNNF---SGDLPNSFISLSNISSLYLQNNQV-TG-SLNVFSGLP-LTTLN 229 (442)
Q Consensus 158 L~L~~n~l~~~~p~-~~~~l-~~L~~L~Ls~N~l---~~~~p~~l~~l~~L~~L~Ls~N~l-~~-~~~~~~~l~-L~~L~ 229 (442)
|+|+++.+....-. .+.+. ++|..|+|++..- ...+..-...+++|.+|||++|.. +. .+..+..++ |++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 99999987643211 11221 4667777776421 112223335677888888877653 22 233555666 77777
Q ss_pred eeccc
Q 013460 230 VANNH 234 (442)
Q Consensus 230 ls~N~ 234 (442)
++.|.
T Consensus 345 lsRCY 349 (419)
T KOG2120|consen 345 LSRCY 349 (419)
T ss_pred hhhhc
Confidence 77765
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=5.2e-06 Score=53.93 Aligned_cols=36 Identities=39% Similarity=0.498 Sum_probs=15.7
Q ss_pred CCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCC
Q 013460 154 SLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFS 190 (442)
Q Consensus 154 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 190 (442)
+|++|++++|+|+. +|..+.+|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34455555555542 3333444444444444444444
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.02 E-value=8.7e-06 Score=70.00 Aligned_cols=102 Identities=25% Similarity=0.266 Sum_probs=64.5
Q ss_pred CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCC-CchhccCCCCCCEEE
Q 013460 129 PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGD-LPNSFISLSNISSLY 207 (442)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ 207 (442)
.+...+||++|.+... ..|..++.|.+|.|++|+|+..-|..-.-+++|..|.|.+|+|... --.-+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4455666666665421 2455677788888888888776666555567788888888877621 112356777888888
Q ss_pred cccCcCCccCc----cCCCCC-ccEEEeec
Q 013460 208 LQNNQVTGSLN----VFSGLP-LTTLNVAN 232 (442)
Q Consensus 208 Ls~N~l~~~~~----~~~~l~-L~~L~ls~ 232 (442)
+-+|.++..-. .+..++ |+.||.+.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 88887765332 344555 66666443
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.02 E-value=4.6e-06 Score=89.45 Aligned_cols=127 Identities=26% Similarity=0.278 Sum_probs=78.2
Q ss_pred CCCCEEEccCCCCCCCCCCCccCCCcEEEccCCc--CCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeC
Q 013460 107 LSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNN--FSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDL 184 (442)
Q Consensus 107 ~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 184 (442)
...+.+.+.+|.+.......-.+.|++|-+..|. +.......|..|+.|+.|||++|.=-+.+|..++.+-+|++|+|
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 4566666666666522222222567777777764 44333444666777777777776666667777777777777777
Q ss_pred CCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeeccc
Q 013460 185 SFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNH 234 (442)
Q Consensus 185 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~ 234 (442)
++..+. .+|..+.++.+|.+||+..+.-...++ ....+. |++|.+-.-.
T Consensus 603 ~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 603 SDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 777777 677777777777777777666544443 223344 6666665443
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=1.2e-05 Score=52.28 Aligned_cols=38 Identities=32% Similarity=0.596 Sum_probs=31.3
Q ss_pred CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCC
Q 013460 129 PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQ 167 (442)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 167 (442)
++|++|++++|+|+ .+|..+.+|++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 46888888888888 577779999999999999999984
No 53
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=97.95 E-value=2.7e-05 Score=75.02 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=23.0
Q ss_pred cceeccCccceEEEEEecCCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
..+||+|+||.||||.|. ++.||||.
T Consensus 215 ~eli~~Grfg~V~KaqL~-~~~VAVKi 240 (534)
T KOG3653|consen 215 LELIGRGRFGCVWKAQLD-NRLVAVKI 240 (534)
T ss_pred HHHhhcCccceeehhhcc-CceeEEEe
Confidence 347999999999999995 59999995
No 54
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.93 E-value=6.3e-06 Score=88.43 Aligned_cols=126 Identities=25% Similarity=0.361 Sum_probs=96.9
Q ss_pred cEEEEEeCCCCCCcccchhccCCCCCCEEEccCCC--CCCCCCCC-cc--CCCcEEEccCCcCCCCccccccCCCCCCEE
Q 013460 84 AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNS--IHDTIPYQ-LP--PNLTSLNLASNNFSGNLPYSIASMVSLSYL 158 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~p~~-~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 158 (442)
.++++.+-+|.+... +.. ...+.|++|-+.+|. +. .++.. |. +.|++|||++|.=-+.+|..++++-+|++|
T Consensus 524 ~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 566666666665422 222 233478888888886 33 33333 22 899999999987777999999999999999
Q ss_pred EcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcC
Q 013460 159 NVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQV 213 (442)
Q Consensus 159 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 213 (442)
+|++..+. .+|..+.++..|.+||+..+.....+|..+..+.+|++|.+-....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~ 654 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL 654 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc
Confidence 99999998 7899999999999999998877666677777899999999876653
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=7.4e-05 Score=72.48 Aligned_cols=131 Identities=18% Similarity=0.232 Sum_probs=78.7
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCC-cCCCCccccccCCCCCCEEEcc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASN-NFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
..++.|++++|.+... |. --.+|+.|.++++.--..+|..++.+|+.|++++| .+. .+|. +|+.|++.
T Consensus 52 ~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~ 120 (426)
T PRK15386 52 RASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS-GLPE------SVRSLEIK 120 (426)
T ss_pred cCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc-cccc------ccceEEeC
Confidence 5677888888877643 31 12368888888754434667666688888888887 444 4443 46777777
Q ss_pred cCcCCCchhhhhcCC-CCCcEEeCCCCCCC--CCCchhccCCCCCCEEEcccCcCCccCccCCCCC--ccEEEeeccc
Q 013460 162 RNSLTQSIGDIFGNL-AGLATLDLSFNNFS--GDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP--LTTLNVANNH 234 (442)
Q Consensus 162 ~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~--L~~L~ls~N~ 234 (442)
.|.+.. +..+ ++|+.|.+.+++.. ..+|..+ -++|++|++++|.....++ .++ |+.|+++.|.
T Consensus 121 ~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~LP~---~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 121 GSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNIILPE---KLPESLQSITLHIEQ 188 (426)
T ss_pred CCCCcc-----cccCcchHhheecccccccccccccccc--CCcccEEEecCCCcccCcc---cccccCcEEEecccc
Confidence 665431 1222 35667766543311 1112111 1578899998887553222 233 8888888763
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=0.00012 Score=71.02 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=74.2
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCC-CCCCCCCCCccCCCcEEEccCCcCC--CCccccccCCCCCCEEE
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGN-SIHDTIPYQLPPNLTSLNLASNNFS--GNLPYSIASMVSLSYLN 159 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~ 159 (442)
.+|+.|.++++.-...+|..+. .+|++|++++| .+. .++..|+.|++..+... +.+|. +|+.|.
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-----sLP~sLe~L~L~~n~~~~L~~LPs------sLk~L~ 138 (426)
T PRK15386 72 NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-----GLPESVRSLEIKGSATDSIKNVPN------GLTSLS 138 (426)
T ss_pred CCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-----ccccccceEEeCCCCCcccccCcc------hHhhee
Confidence 4799999998665556665553 58999999998 554 23467899999877654 23443 466777
Q ss_pred cccCcCC--CchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCc
Q 013460 160 VSRNSLT--QSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQ 212 (442)
Q Consensus 160 L~~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 212 (442)
+.+++.. ..+|.. -.++|++|++++|... .+|..+. .+|+.|+++.|.
T Consensus 139 I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 139 INSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred ccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 7543321 111111 1268999999998876 4554444 589999998874
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.72 E-value=4.5e-05 Score=68.62 Aligned_cols=174 Identities=20% Similarity=0.256 Sum_probs=98.1
Q ss_pred CcEEEEEeCCCCCCc----ccchhccCCCCCCEEEccCCCCC---CCCCCCc--------c-CCCcEEEccCCcCCCCcc
Q 013460 83 SAVVSIDISGLGLSG----TMGYLLSDLLSLRKFDLSGNSIH---DTIPYQL--------P-PNLTSLNLASNNFSGNLP 146 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~---~~~p~~~--------~-~~L~~L~Ls~n~l~~~~p 146 (442)
..++.++|+||.|.. .+...+.+-.+|+..++++-... +.++..+ . ++|+.++||.|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 467788888888864 34445556667777777654222 2222221 1 777888888887775555
Q ss_pred cc----ccCCCCCCEEEcccCcCCCc----hhhh---------hcCCCCCcEEeCCCCCCCCCCch-----hccCCCCCC
Q 013460 147 YS----IASMVSLSYLNVSRNSLTQS----IGDI---------FGNLAGLATLDLSFNNFSGDLPN-----SFISLSNIS 204 (442)
Q Consensus 147 ~~----~~~l~~L~~L~L~~n~l~~~----~p~~---------~~~l~~L~~L~Ls~N~l~~~~p~-----~l~~l~~L~ 204 (442)
+. +...+.|.+|.|++|.+... +... ..+-+.|+.++...|++.. .+. .+..-.+|+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCce
Confidence 43 34567788888888776421 1111 2234677788888887752 221 233335677
Q ss_pred EEEcccCcCCcc--Cc----cCCCCC-ccEEEeecccCcccCC-------hhccccccccccCCcCC
Q 013460 205 SLYLQNNQVTGS--LN----VFSGLP-LTTLNVANNHFSGWIP-------RELISIRTFIYDGNSFD 257 (442)
Q Consensus 205 ~L~Ls~N~l~~~--~~----~~~~l~-L~~L~ls~N~l~~~~p-------~~~~~l~~l~~~~n~~~ 257 (442)
.+.+..|.|.-. -. -+.... |+.|||..|.++-.-. ..+..++.|.+.++-+.
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 777777776531 10 111222 7777777777763211 12233555555554443
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=5.1e-06 Score=75.47 Aligned_cols=84 Identities=25% Similarity=0.301 Sum_probs=43.1
Q ss_pred CCCcEEEccCCcCCC--CccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCC-CchhccCCCCCCE
Q 013460 129 PNLTSLNLASNNFSG--NLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGD-LPNSFISLSNISS 205 (442)
Q Consensus 129 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~ 205 (442)
+.++.|||.+|.|+. .+...+.+|+.|++|+|+.|.++..+-..-..+.+|+.|.|.+..+.-. ....+..++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 445555555555551 2333344566666666666666543322112345566666665555421 2233455566666
Q ss_pred EEcccCc
Q 013460 206 LYLQNNQ 212 (442)
Q Consensus 206 L~Ls~N~ 212 (442)
|+++.|.
T Consensus 151 lHmS~N~ 157 (418)
T KOG2982|consen 151 LHMSDNS 157 (418)
T ss_pred hhhccch
Confidence 6666663
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.57 E-value=9.8e-05 Score=63.66 Aligned_cols=99 Identities=25% Similarity=0.298 Sum_probs=72.9
Q ss_pred CCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCc--cCccCCCCC-ccEEE
Q 013460 153 VSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTG--SLNVFSGLP-LTTLN 229 (442)
Q Consensus 153 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~l~-L~~L~ 229 (442)
.+...+||++|.+... +.|..++.|.+|.|++|+|+..-|.--.-+++|..|.|.+|.|.. .+..+..++ |++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4667889999998633 357788999999999999996666655667889999999999874 445666777 99999
Q ss_pred eecccCcccCC------hhccccccccccC
Q 013460 230 VANNHFSGWIP------RELISIRTFIYDG 253 (442)
Q Consensus 230 ls~N~l~~~~p------~~~~~l~~l~~~~ 253 (442)
+-+|+++..-- .-+++++.|++.+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 98888875322 2345566665544
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=4.7e-05 Score=79.78 Aligned_cols=130 Identities=25% Similarity=0.239 Sum_probs=58.9
Q ss_pred CcEEEEEeCCCCCC--cccchhccCCCCCCEEEccCCCCCCCCCCCcc---CCCcEEEccCCcCCCCccccccCCCCCCE
Q 013460 83 SAVVSIDISGLGLS--GTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP---PNLTSLNLASNNFSGNLPYSIASMVSLSY 157 (442)
Q Consensus 83 ~~l~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~---~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 157 (442)
.+|++||++|...- +.+-..-.-||.|+.|.+.+-.+....-..+. ++|..||+|+.+++.. ..++++.+|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 35666666654432 12222233445666666655544322100111 5566666666555532 34555555555
Q ss_pred EEcccCcCCC-chhhhhcCCCCCcEEeCCCCCCCCCC--c----hhccCCCCCCEEEcccCcCC
Q 013460 158 LNVSRNSLTQ-SIGDIFGNLAGLATLDLSFNNFSGDL--P----NSFISLSNISSLYLQNNQVT 214 (442)
Q Consensus 158 L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~--p----~~l~~l~~L~~L~Ls~N~l~ 214 (442)
|.+.+=.+.. ..-..+.+|++|+.||+|........ . +.-..+++|+.||.|++.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 5555544432 11122345555666665554443211 0 01123455555555555444
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.46 E-value=5.2e-05 Score=68.23 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=73.6
Q ss_pred CcEEEEEeCCCCCCcccch----hccCCCCCCEEEccCCCCCCCCCCCcc---------------CCCcEEEccCCcCCC
Q 013460 83 SAVVSIDISGLGLSGTMGY----LLSDLLSLRKFDLSGNSIHDTIPYQLP---------------PNLTSLNLASNNFSG 143 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~p~~~~---------------~~L~~L~Ls~n~l~~ 143 (442)
++++.++|++|.+....|+ .++.-+.|.+|.|++|.+.-.....++ +.|+++....|++..
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence 5677777777777654443 445556677777777766422211111 666777777776652
Q ss_pred Cc----cccccCCCCCCEEEcccCcCCCch-----hhhhcCCCCCcEEeCCCCCCCCC----CchhccCCCCCCEEEccc
Q 013460 144 NL----PYSIASMVSLSYLNVSRNSLTQSI-----GDIFGNLAGLATLDLSFNNFSGD----LPNSFISLSNISSLYLQN 210 (442)
Q Consensus 144 ~~----p~~~~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~ 210 (442)
-. ...+.....|+++.+..|.|.... -..+..+.+|+.|||..|.|+.. +...+..++.|+.|.+..
T Consensus 172 gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 172 GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence 11 111222346667777776654221 11223456777777777776632 223455666677777777
Q ss_pred CcCC
Q 013460 211 NQVT 214 (442)
Q Consensus 211 N~l~ 214 (442)
|-++
T Consensus 252 Clls 255 (388)
T COG5238 252 CLLS 255 (388)
T ss_pred hhhc
Confidence 7665
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=9e-05 Score=77.67 Aligned_cols=132 Identities=20% Similarity=0.303 Sum_probs=81.9
Q ss_pred CCCCEEEccCCCCCC-CCCCCcc---CCCcEEEccCCcCCCC-ccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcE
Q 013460 107 LSLRKFDLSGNSIHD-TIPYQLP---PNLTSLNLASNNFSGN-LPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLAT 181 (442)
Q Consensus 107 ~~L~~L~l~~n~l~~-~~p~~~~---~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 181 (442)
.+|++||+++...-. .-|..++ |.|+.|.+++-.+... .-....++++|..||+++.+++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 367777777754321 1111222 7888888877666422 223345677888888888887744 55777888887
Q ss_pred EeCCCCCCCC-CCchhccCCCCCCEEEcccCcCCccC-------ccCCCCC-ccEEEeecccCcccCC
Q 013460 182 LDLSFNNFSG-DLPNSFISLSNISSLYLQNNQVTGSL-------NVFSGLP-LTTLNVANNHFSGWIP 240 (442)
Q Consensus 182 L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~-------~~~~~l~-L~~L~ls~N~l~~~~p 240 (442)
|.+.+=.+.. ..-..+.+|++|+.||+|........ ..-..+| |+.||.|++.+...+-
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 7776655542 22345677888888888877654422 1223355 8888888777765443
No 63
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=97.21 E-value=0.00025 Score=71.94 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=29.2
Q ss_pred hcCCCCccceeccCccceEEEEEe-----------------cCCcEEEEec
Q 013460 408 ATNSFSQEFLIGEGSLGRVYRAEF-----------------ANGKVIYCVR 441 (442)
Q Consensus 408 AT~~F~~~~~IG~GgfG~VYkg~L-----------------~~G~~VAVKr 441 (442)
.+++|...++||+|+||+||||.+ .+++.|||||
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~ 193 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKR 193 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEE
Confidence 367899999999999999999975 3467899997
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.19 E-value=0.00024 Score=63.81 Aligned_cols=63 Identities=27% Similarity=0.309 Sum_probs=33.3
Q ss_pred CCCCCCEEEcccC--cCCCchhhhhcCCCCCcEEeCCCCCCCCCCchh---ccCCCCCCEEEcccCcCCc
Q 013460 151 SMVSLSYLNVSRN--SLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNS---FISLSNISSLYLQNNQVTG 215 (442)
Q Consensus 151 ~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~ 215 (442)
.|++|+.|.++.| ++.+.++-....+++|++|+|++|++.- +++ +..+.+|..|++.+|..+.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccc
Confidence 4445555555555 3333333334444666666666666551 222 3345556666776666655
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.06 E-value=0.00033 Score=62.93 Aligned_cols=91 Identities=29% Similarity=0.313 Sum_probs=67.9
Q ss_pred ccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCC--CCCCCCchhccCCCCCCEEEcccCcCCc--cCccC
Q 013460 145 LPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFN--NFSGDLPNSFISLSNISSLYLQNNQVTG--SLNVF 220 (442)
Q Consensus 145 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~~~~ 220 (442)
+......+..|+.|.+.+..++.. ..+-.|++|++|.++.| ++.+.++-....+++|++|+|++|++.. .++.+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 444444556677777777776632 23566889999999999 6677776667778999999999999975 33455
Q ss_pred CCCC-ccEEEeecccCcc
Q 013460 221 SGLP-LTTLNVANNHFSG 237 (442)
Q Consensus 221 ~~l~-L~~L~ls~N~l~~ 237 (442)
..+. |..|++.+|..+.
T Consensus 113 ~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhcchhhhhcccCCccc
Confidence 6666 8999999998776
No 66
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=97.01 E-value=0.00084 Score=68.88 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=30.4
Q ss_pred eeHHHHHhhcCCCCc---------cceeccCccceEEEEEecC----CcEEEEe
Q 013460 400 YTVASLQTATNSFSQ---------EFLIGEGSLGRVYRAEFAN----GKVIYCV 440 (442)
Q Consensus 400 f~~~eL~~AT~~F~~---------~~~IG~GgfG~VYkg~L~~----G~~VAVK 440 (442)
++|+|--.|-..|.+ +.+||.|-||.||+|.|+- -..||||
T Consensus 610 ~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIK 663 (996)
T KOG0196|consen 610 HTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIK 663 (996)
T ss_pred ccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEe
Confidence 566666666555543 4899999999999999932 2469998
No 67
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=3.8e-05 Score=69.97 Aligned_cols=137 Identities=20% Similarity=0.264 Sum_probs=67.8
Q ss_pred CccEEecCCcEEEEEeCCCCCCcccchhccCCC--CCCEEEccCCCCCCC-CCCCcc---CCCcEEEccCCcCCC-Cccc
Q 013460 75 WKGVACEGSAVVSIDISGLGLSGTMGYLLSDLL--SLRKFDLSGNSIHDT-IPYQLP---PNLTSLNLASNNFSG-NLPY 147 (442)
Q Consensus 75 w~gv~c~~~~l~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~-~p~~~~---~~L~~L~Ls~n~l~~-~~p~ 147 (442)
|+++.-+.+.-+.+|+.+.+|.. ..+..+. .+..+.+....+... +.+.+. ..|+.|||++..++. .+-.
T Consensus 128 fyr~~~de~lW~~lDl~~r~i~p---~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~ 204 (419)
T KOG2120|consen 128 FYRLASDESLWQTLDLTGRNIHP---DVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHG 204 (419)
T ss_pred HhhccccccceeeeccCCCccCh---hHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHH
Confidence 44444444556777777777652 2222221 233333333222211 111111 456666666666551 2222
Q ss_pred cccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCC-CCCC-CchhccCCCCCCEEEcccCcCC
Q 013460 148 SIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNN-FSGD-LPNSFISLSNISSLYLQNNQVT 214 (442)
Q Consensus 148 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~-~p~~l~~l~~L~~L~Ls~N~l~ 214 (442)
-+..+.+|+.|.|.++++...+-..+..-.+|+.|+|+.++ |+.. .---+.+++.|..|+|+-+.++
T Consensus 205 iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 34455666666666666666666666666666666666542 2211 1112345666666666666554
No 68
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.81 E-value=0.0021 Score=61.93 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=23.2
Q ss_pred cceeccCccceEEEEEecCCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
.+.||+|.||.||||.++ |..||||-
T Consensus 216 ~e~IGkGRyGEVwrG~wr-Ge~VAVKi 241 (513)
T KOG2052|consen 216 QEIIGKGRFGEVWRGRWR-GEDVAVKI 241 (513)
T ss_pred EEEecCccccceeecccc-CCceEEEE
Confidence 468999999999999996 68999994
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=6.3e-05 Score=67.90 Aligned_cols=77 Identities=26% Similarity=0.290 Sum_probs=39.2
Q ss_pred CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchh-hhhcCCCCCcEEeCCCCCCCCCCch-----hccCCCC
Q 013460 129 PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIG-DIFGNLAGLATLDLSFNNFSGDLPN-----SFISLSN 202 (442)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~-----~l~~l~~ 202 (442)
+.|++|.|+-|.|+..- .+..++.|++|+|..|.|...-. ..+.++++|+.|.|..|-..|.-+. .+..|++
T Consensus 41 p~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPn 118 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPN 118 (388)
T ss_pred ccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHccc
Confidence 44444444444444221 24455666666666666553211 2345666666666666666554432 2344555
Q ss_pred CCEEE
Q 013460 203 ISSLY 207 (442)
Q Consensus 203 L~~L~ 207 (442)
|+.||
T Consensus 119 LkKLD 123 (388)
T KOG2123|consen 119 LKKLD 123 (388)
T ss_pred chhcc
Confidence 55554
No 70
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=96.72 E-value=0.0026 Score=65.84 Aligned_cols=28 Identities=21% Similarity=0.529 Sum_probs=22.4
Q ss_pred ccceeccCccceEEEEE-ecCCc----EEEEec
Q 013460 414 QEFLIGEGSLGRVYRAE-FANGK----VIYCVR 441 (442)
Q Consensus 414 ~~~~IG~GgfG~VYkg~-L~~G~----~VAVKr 441 (442)
++.+||+|.||+||||. +++|. +||+|.
T Consensus 700 k~kvLGsgAfGtV~kGiw~Pege~vKipVaiKv 732 (1177)
T KOG1025|consen 700 KDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKV 732 (1177)
T ss_pred hhceeccccceeEEeeeEecCCceecceeEEEE
Confidence 36799999999999995 47774 577774
No 71
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=96.66 E-value=0.0013 Score=68.06 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=30.0
Q ss_pred hcCCCCccceeccCccceEEEEEecC-----CcEEEEec
Q 013460 408 ATNSFSQEFLIGEGSLGRVYRAEFAN-----GKVIYCVR 441 (442)
Q Consensus 408 AT~~F~~~~~IG~GgfG~VYkg~L~~-----G~~VAVKr 441 (442)
..++|...++||+|+||.||+|+..+ |..||||+
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~ 168 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKK 168 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEE
Confidence 56788889999999999999999865 58999996
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.00011 Score=66.36 Aligned_cols=99 Identities=24% Similarity=0.253 Sum_probs=74.2
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCc-cccccCCCCCCEEEcc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNL-PYSIASMVSLSYLNVS 161 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~ 161 (442)
.+++.|++-|++|..+ .....|+.|+.|.|+-|.|+..-|..-.++|++|+|..|.|.... -..+.++++|+.|.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 4566666667777654 345678889999999999987666555589999999999887331 1346789999999999
Q ss_pred cCcCCCchhh-----hhcCCCCCcEEe
Q 013460 162 RNSLTQSIGD-----IFGNLAGLATLD 183 (442)
Q Consensus 162 ~n~l~~~~p~-----~~~~l~~L~~L~ 183 (442)
.|--.|.-+. .+.-|++|+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 9988776543 355678888875
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.53 E-value=0.011 Score=48.18 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=47.1
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNV 160 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (442)
.+++.+.+.. .+...-...|..+++|+.+.+.++ +.......+. ..|+.+.+.+ .+.......|..+++|+.+++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 4667777764 455555566777777777777664 4433223333 3566666654 333223334555666666666
Q ss_pred ccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCC
Q 013460 161 SRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNI 203 (442)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 203 (442)
..+ +.......|.+. +|+.+.+.. .+...-...|.++++|
T Consensus 89 ~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred Ccc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 554 443334445554 666666554 3332333444444443
No 74
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=96.43 E-value=0.0019 Score=64.55 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=30.0
Q ss_pred cccceeHHHHHhhcCCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 396 TATSYTVASLQTATNSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 396 ~~~~f~~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
....+.++|++.+ ..||+|.||+||||.+.+ .||||.
T Consensus 385 ~~WeIp~~ev~l~-------~rIGsGsFGtV~Rg~whG--dVAVK~ 421 (678)
T KOG0193|consen 385 EEWEIPPEEVLLG-------ERIGSGSFGTVYRGRWHG--DVAVKL 421 (678)
T ss_pred cccccCHHHhhcc-------ceeccccccceeeccccc--ceEEEE
Confidence 3456778888874 479999999999999965 599995
No 75
>PTZ00284 protein kinase; Provisional
Probab=95.93 E-value=0.0041 Score=63.08 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=33.4
Q ss_pred HHHHHhhcCCCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 402 VASLQTATNSFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 402 ~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
.+++...+++|...++||+|+||+||+|+.. .++.||||+
T Consensus 121 ~~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~ 161 (467)
T PTZ00284 121 GEDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKI 161 (467)
T ss_pred CCccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEE
Confidence 4556667888888899999999999999874 567899995
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.53 E-value=0.03 Score=45.55 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=29.2
Q ss_pred hhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCC
Q 013460 101 YLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAG 178 (442)
Q Consensus 101 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 178 (442)
..|..+.+|+.+.+.. .+.......+. ++|+.+.+.++ +.......|.++..|+.+.+.+ .+.......|..+.+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3455666666666653 34322222222 34555555443 3322223344444444444433 222222233334444
Q ss_pred CcEEeCC
Q 013460 179 LATLDLS 185 (442)
Q Consensus 179 L~~L~Ls 185 (442)
|+.+++.
T Consensus 83 l~~i~~~ 89 (129)
T PF13306_consen 83 LKNIDIP 89 (129)
T ss_dssp ECEEEET
T ss_pred ccccccC
Confidence 4444443
No 77
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=95.45 E-value=0.0057 Score=59.96 Aligned_cols=28 Identities=36% Similarity=0.619 Sum_probs=24.2
Q ss_pred cceeccCccceEEEEE-ecCCcEEEEecC
Q 013460 415 EFLIGEGSLGRVYRAE-FANGKVIYCVRN 442 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~-L~~G~~VAVKr~ 442 (442)
-.+||+|-||.||||. +.+|..||.||.
T Consensus 122 i~kIGeGTyg~VYkAr~~~tgkivALKKv 150 (560)
T KOG0600|consen 122 IEKIGEGTYGQVYKARDLETGKIVALKKV 150 (560)
T ss_pred HHHhcCcchhheeEeeecccCcEEEEEEe
Confidence 4469999999999994 688999999983
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.39 E-value=0.0073 Score=32.58 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=5.1
Q ss_pred CcEEEccCCcCC
Q 013460 131 LTSLNLASNNFS 142 (442)
Q Consensus 131 L~~L~Ls~n~l~ 142 (442)
|++|+|++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 79
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.30 E-value=0.0075 Score=32.54 Aligned_cols=18 Identities=56% Similarity=0.791 Sum_probs=8.4
Q ss_pred CCEEEcccCcCCCchhhhh
Q 013460 155 LSYLNVSRNSLTQSIGDIF 173 (442)
Q Consensus 155 L~~L~L~~n~l~~~~p~~~ 173 (442)
|++|+|++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555554 344333
No 80
>PTZ00036 glycogen synthase kinase; Provisional
Probab=95.28 E-value=0.013 Score=59.02 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=27.8
Q ss_pred cCCCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 409 TNSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 409 T~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
+++|...++||+|+||.||+|+. ..|+.||||+
T Consensus 65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~ 98 (440)
T PTZ00036 65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKK 98 (440)
T ss_pred CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEE
Confidence 45566678999999999999987 4578999996
No 81
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=95.17 E-value=0.014 Score=58.49 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=27.3
Q ss_pred CCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
..|++ +-||+|++|.||+|++.+|+.||||.
T Consensus 118 ~~fd~-~plasaSigQVh~A~l~~G~~VaVKv 148 (437)
T TIGR01982 118 AEFEE-KPLAAASIAQVHRARLVDGKEVAVKV 148 (437)
T ss_pred hhCCC-cceeeeehhheEEEEecCCCEEEEEe
Confidence 44554 68999999999999999999999996
No 82
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=95.12 E-value=0.0065 Score=54.90 Aligned_cols=38 Identities=29% Similarity=0.407 Sum_probs=30.2
Q ss_pred cceeHHHHHhhcCCCCccceeccCccceEEEEEe-cCCcEEEEecC
Q 013460 398 TSYTVASLQTATNSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVRN 442 (442)
Q Consensus 398 ~~f~~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr~ 442 (442)
..|+-++|+. -..||.|.||+|+|-.. +.|+.+||||+
T Consensus 59 ~~F~~~~Lqd-------lg~iG~G~fG~V~KM~hk~sg~~mAVKrI 97 (361)
T KOG1006|consen 59 HTFTSDNLQD-------LGEIGNGAFGTVNKMLHKPSGKLMAVKRI 97 (361)
T ss_pred cccccchHHH-------HHHhcCCcchhhhhhhcCccCcEEEEEEe
Confidence 4566666665 34699999999999988 66899999985
No 83
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=95.09 E-value=0.013 Score=60.00 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=28.4
Q ss_pred hhcCCCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 407 TATNSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 407 ~AT~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
...++|.-.++||+|+||+||+|.. .+|+.||||+
T Consensus 29 ~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~ 64 (496)
T PTZ00283 29 EQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKV 64 (496)
T ss_pred ccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEE
Confidence 3445566678999999999999975 5789999996
No 84
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=95.06 E-value=0.0064 Score=49.03 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=25.9
Q ss_pred CCccceeccCccceEEEEEecCCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
|+ .+-||.|+.|.||+|+|.+|+.||||.
T Consensus 14 fd-~~PlasASiaQVh~a~l~~g~~VaVKV 42 (119)
T PF03109_consen 14 FD-PEPLASASIAQVHRARLKDGEEVAVKV 42 (119)
T ss_pred CC-cchhhheehhhheeeeecccchhhhhh
Confidence 44 357999999999999999999999996
No 85
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=95.00 E-value=0.016 Score=55.16 Aligned_cols=32 Identities=25% Similarity=0.513 Sum_probs=24.9
Q ss_pred HHHHHhhcCCCCccceeccCccceEEEEEecC
Q 013460 402 VASLQTATNSFSQEFLIGEGSLGRVYRAEFAN 433 (442)
Q Consensus 402 ~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~ 433 (442)
.+||..-...|.-..++-||.||.||+|.+++
T Consensus 276 ~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~e 307 (563)
T KOG1024|consen 276 LQELTVQRCRVRLSCLLQEGTFGRIYRGIWRE 307 (563)
T ss_pred HHhhhhhhhheechhhhhcCchhheeeeeecc
Confidence 45666556667777899999999999996654
No 86
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=94.93 E-value=0.016 Score=56.34 Aligned_cols=27 Identities=30% Similarity=0.580 Sum_probs=22.5
Q ss_pred cceeccCccceEEEEEecCCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
.+.||+|+||+||||.+++-..||||+
T Consensus 46 ~~~iG~G~~g~V~~~~~~g~~~vavK~ 72 (362)
T KOG0192|consen 46 EEVLGSGSFGTVYKGKWRGTDVVAVKI 72 (362)
T ss_pred hhhcccCCceeEEEEEeCCceeEEEEE
Confidence 345999999999999996544499996
No 87
>smart00090 RIO RIO-like kinase.
Probab=94.92 E-value=0.022 Score=52.05 Aligned_cols=27 Identities=26% Similarity=0.113 Sum_probs=24.3
Q ss_pred cceeccCccceEEEEE--ecCCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAE--FANGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~--L~~G~~VAVKr 441 (442)
...||+|+||.||+|+ ..+|+.||||.
T Consensus 33 ~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~ 61 (237)
T smart00090 33 GGCISTGKEANVYHALDFDGSGKERAVKI 61 (237)
T ss_pred CCeeccCcceeEEEEEecCCCCcEEEEEE
Confidence 3579999999999998 78999999995
No 88
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=94.89 E-value=0.01 Score=55.33 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=23.4
Q ss_pred cceeccCccceEEEEEe-cCCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
-|.|++|.||.||||.= .+..+||.||
T Consensus 81 lnrI~EGtyGiVYRakdk~t~eIVALKr 108 (419)
T KOG0663|consen 81 LNRIEEGTYGVVYRAKDKKTDEIVALKR 108 (419)
T ss_pred HhhcccCcceeEEEeccCCcceeEEeee
Confidence 57899999999999976 4567899998
No 89
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=94.66 E-value=0.02 Score=56.21 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=23.5
Q ss_pred CCccceeccCccceEEEEEe------cCCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEF------ANGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L------~~G~~VAVKr 441 (442)
|.-.+.||+|+||.||+|.. .++..||||+
T Consensus 37 ~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~ 72 (375)
T cd05104 37 LSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKM 72 (375)
T ss_pred eehhheecCCccceEEEEEEeccccCccceeEEEEe
Confidence 33367899999999999963 3456899996
No 90
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.65 E-value=0.00023 Score=71.47 Aligned_cols=174 Identities=22% Similarity=0.269 Sum_probs=122.5
Q ss_pred EEEEEeCCCCCCc----ccchhccCCCCCCEEEccCCCCCCCCCCCcc-------CCCcEEEccCCcCCCC----ccccc
Q 013460 85 VVSIDISGLGLSG----TMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP-------PNLTSLNLASNNFSGN----LPYSI 149 (442)
Q Consensus 85 l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-------~~L~~L~Ls~n~l~~~----~p~~~ 149 (442)
+..++|.+|.+.. .+...+.....|..|++++|.+.+..-..+. ..|++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7788999999874 3456778888999999999999843222221 5677788888988744 45566
Q ss_pred cCCCCCCEEEcccCcCCC----chhhhhc----CCCCCcEEeCCCCCCCCCC----chhccCCCC-CCEEEcccCcCCcc
Q 013460 150 ASMVSLSYLNVSRNSLTQ----SIGDIFG----NLAGLATLDLSFNNFSGDL----PNSFISLSN-ISSLYLQNNQVTGS 216 (442)
Q Consensus 150 ~~l~~L~~L~L~~n~l~~----~~p~~~~----~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~-L~~L~Ls~N~l~~~ 216 (442)
.....|+.++++.|.+.. .++..+. ...++++|+|++|.++... ...+...+. +..|++.+|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 667889999999998841 1233333 4788999999999987322 123445555 67799999999753
Q ss_pred C-----ccCCCC-C-ccEEEeecccCcccCChh-------ccccccccccCCcCCC
Q 013460 217 L-----NVFSGL-P-LTTLNVANNHFSGWIPRE-------LISIRTFIYDGNSFDN 258 (442)
Q Consensus 217 ~-----~~~~~l-~-L~~L~ls~N~l~~~~p~~-------~~~l~~l~~~~n~~~~ 258 (442)
. +.+..+ . ++.++++.|.|...-... ...++.+.+.+|++..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 1 345555 2 899999999998654322 2356677788888763
No 91
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=0.035 Score=57.88 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=26.3
Q ss_pred ceeHHHHHhhcCCCCccceeccCccceEEEEEecCC------cEEEEec
Q 013460 399 SYTVASLQTATNSFSQEFLIGEGSLGRVYRAEFANG------KVIYCVR 441 (442)
Q Consensus 399 ~f~~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~G------~~VAVKr 441 (442)
.|+..+++- .+.||+|.||.||+|...+. +.||||.
T Consensus 482 ~i~r~~i~~-------~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~ 523 (774)
T KOG1026|consen 482 EIPRSDIVF-------KEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKA 523 (774)
T ss_pred Eechhheee-------hhhhcCchhhhhhhhhccCCCCCccceehhHhh
Confidence 455555543 45699999999999998443 4799984
No 92
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=94.37 E-value=0.012 Score=63.50 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=27.1
Q ss_pred CCCCccceeccCccceEEEEEe-cCCcEEEEecC
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVRN 442 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr~ 442 (442)
++|.+-.+||+||||.|||+.= -||+..||||+
T Consensus 479 ~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKI 512 (1351)
T KOG1035|consen 479 NDFEELELLGKGGFGSVVKVRNKLDGREYAIKKI 512 (1351)
T ss_pred hhhHHHHHhcCCCCceEEEEeecccchhhhhhhc
Confidence 4566666899999999999943 38999999995
No 93
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=94.21 E-value=0.022 Score=55.84 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=29.3
Q ss_pred HhhcCCCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 406 QTATNSFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 406 ~~AT~~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
....++|...++||+|+||.||++... +|..||||+
T Consensus 39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~ 75 (370)
T cd05596 39 RMKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKL 75 (370)
T ss_pred CCCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEE
Confidence 334566777889999999999999874 578999995
No 94
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=94.17 E-value=0.027 Score=55.72 Aligned_cols=30 Identities=23% Similarity=0.514 Sum_probs=25.5
Q ss_pred CCccceeccCccceEEEEEe-cCCcEEEEecC
Q 013460 412 FSQEFLIGEGSLGRVYRAEF-ANGKVIYCVRN 442 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr~ 442 (442)
|. +++||+|-||+||-|.- ..|+.||||.+
T Consensus 567 f~-devLGSGQFG~VYgg~hRktGrdVAvKvI 597 (888)
T KOG4236|consen 567 FA-DEVLGSGQFGTVYGGKHRKTGRDVAVKVI 597 (888)
T ss_pred hh-HhhccCCcceeeecceecccCceeeeeee
Confidence 44 46999999999999987 56899999963
No 95
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=94.17 E-value=0.032 Score=54.75 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=33.7
Q ss_pred eHHHHHhhcCCCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 401 TVASLQTATNSFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 401 ~~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
.+.++..+.++|.-.+.||+|+||.||++... +++.||+|.
T Consensus 34 ~~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~ 75 (371)
T cd05622 34 KIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKL 75 (371)
T ss_pred HHhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEE
Confidence 35566667788888899999999999999885 467899985
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=94.15 E-value=0.08 Score=42.37 Aligned_cols=30 Identities=33% Similarity=0.636 Sum_probs=16.3
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHhh
Q 013460 299 ELPAGAIVGIVLGAVFLVALALLALYFCIR 328 (442)
Q Consensus 299 ~~~~~~ii~iv~~~~~~~~~~~~~~~~~~r 328 (442)
..+...+++|++++++.++.++++++|+.|
T Consensus 60 ~fs~~~i~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp SSS-TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccceeehhHHHHHHHHHHHHHHHHHHH
Confidence 444556777777776655444444444433
No 97
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=94.09 E-value=0.031 Score=54.93 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=23.5
Q ss_pred CCccceeccCccceEEEEEe------cCCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEF------ANGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L------~~G~~VAVKr 441 (442)
|.-.+.||+|+||.||+|+- .++..||||+
T Consensus 40 ~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~ 75 (374)
T cd05106 40 LQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKM 75 (374)
T ss_pred ceehheecCCCcccEEEEEEecCCcccccceeEEEe
Confidence 44467899999999999873 3445899996
No 98
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=94.00 E-value=0.034 Score=54.05 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.5
Q ss_pred cceeccCccceEEEEEec-CCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
.+.||+|+||.||+|... +|+.||||.
T Consensus 79 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~ 106 (353)
T PLN00034 79 VNRIGSGAGGTVYKVIHRPTGRLYALKV 106 (353)
T ss_pred hhhccCCCCeEEEEEEECCCCCEEEEEE
Confidence 457999999999999874 688999995
No 99
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=93.84 E-value=0.041 Score=53.97 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=31.2
Q ss_pred HHHHhhcCCCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 403 ASLQTATNSFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 403 ~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
+++....++|...++||+|+||.||++... +|+.||+|.
T Consensus 36 ~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~ 75 (370)
T cd05621 36 RKLQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKL 75 (370)
T ss_pred HhcCCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEE
Confidence 344455677777889999999999999885 467899985
No 100
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=93.73 E-value=0.77 Score=46.52 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=24.5
Q ss_pred cceeccCccceEEEEEecCCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
.+.||+|-||.|-.-...++..||||.
T Consensus 543 ~ekiGeGqFGEVhLCeveg~lkVAVK~ 569 (807)
T KOG1094|consen 543 KEKIGEGQFGEVHLCEVEGPLKVAVKI 569 (807)
T ss_pred hhhhcCcccceeEEEEecCceEEEEee
Confidence 357999999999999998889999995
No 101
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=93.59 E-value=0.054 Score=55.36 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=27.7
Q ss_pred CCCCccceeccCccceEEEEEecC-CcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFAN-GKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~~-G~~VAVKr 441 (442)
..|++ .-||+|++|.||+|++.+ |+.||||.
T Consensus 120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV 151 (537)
T PRK04750 120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKV 151 (537)
T ss_pred HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEE
Confidence 45776 689999999999999998 99999995
No 102
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=93.52 E-value=0.062 Score=53.32 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=23.0
Q ss_pred CCccceeccCccceEEEEEecC------CcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEFAN------GKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L~~------G~~VAVKr 441 (442)
|.-.++||+|+||.||+|+... +..||||+
T Consensus 39 ~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~ 74 (400)
T cd05105 39 LVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKM 74 (400)
T ss_pred eehhheecCCCCceEEEEEEcccCCCCCceEEEEEe
Confidence 3335789999999999998622 34699996
No 103
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=93.48 E-value=0.061 Score=53.68 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=22.1
Q ss_pred cceeccCccceEEEEEecCC----cE-EEEec
Q 013460 415 EFLIGEGSLGRVYRAEFANG----KV-IYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~G----~~-VAVKr 441 (442)
..+||+|.||.||+|.|.-+ .. ||||.
T Consensus 162 ~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~ 193 (474)
T KOG0194|consen 162 GKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKT 193 (474)
T ss_pred cceeecccccEEEEEEEEecCCceeeeeEEEe
Confidence 47899999999999999543 23 89985
No 104
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=93.46 E-value=0.028 Score=58.56 Aligned_cols=29 Identities=34% Similarity=0.636 Sum_probs=25.7
Q ss_pred CCccceeccCccc-eEEEEEecCCcEEEEec
Q 013460 412 FSQEFLIGEGSLG-RVYRAEFANGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG-~VYkg~L~~G~~VAVKr 441 (442)
|+.+.++|.|.-| .||+|++ +|+.|||||
T Consensus 511 ~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKr 540 (903)
T KOG1027|consen 511 FSPKEILGYGSNGTVVFRGVY-EGREVAVKR 540 (903)
T ss_pred eccHHHcccCCCCcEEEEEee-CCceehHHH
Confidence 6677899999999 5999999 689999998
No 105
>PHA03211 serine/threonine kinase US3; Provisional
Probab=93.41 E-value=0.065 Score=54.16 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=27.6
Q ss_pred cCCCCccceeccCccceEEEEEecC-CcEEEEec
Q 013460 409 TNSFSQEFLIGEGSLGRVYRAEFAN-GKVIYCVR 441 (442)
Q Consensus 409 T~~F~~~~~IG~GgfG~VYkg~L~~-G~~VAVKr 441 (442)
..+|.-...||+|+||.||+|..++ ++.||||+
T Consensus 168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~ 201 (461)
T PHA03211 168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKA 201 (461)
T ss_pred cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEec
Confidence 3457777899999999999999865 67899995
No 106
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=93.22 E-value=0.055 Score=53.69 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=22.6
Q ss_pred cceeccCccceEEEEEecC------CcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFAN------GKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~------G~~VAVKr 441 (442)
...||+|+||.||+|...+ +..||||+
T Consensus 42 ~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~ 74 (401)
T cd05107 42 GRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKM 74 (401)
T ss_pred hhhccCCCceeEEEEEEcCCCCCCCceEEEEEe
Confidence 5689999999999998743 35799996
No 107
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=93.10 E-value=0.0092 Score=54.74 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.9
Q ss_pred ceeccCccceEEEEEe-cCCcEEEEec
Q 013460 416 FLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 416 ~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
..||+|+||.||||.. ..|++||||+
T Consensus 39 ~KLGEGSYGSV~KAIH~EsG~v~AIK~ 65 (502)
T KOG0574|consen 39 GKLGEGSYGSVHKAIHRESGHVLAIKK 65 (502)
T ss_pred HHhcCCcchHHHHHHHhccCcEEEEEe
Confidence 3699999999999987 5589999997
No 108
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=93.06 E-value=0.07 Score=51.65 Aligned_cols=30 Identities=33% Similarity=0.450 Sum_probs=23.9
Q ss_pred CCccceeccCccceEEEEEecCC--cEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEFANG--KVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L~~G--~~VAVKr 441 (442)
|.-...||+|+||.||+|...+. ..||||+
T Consensus 32 y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~ 63 (340)
T PTZ00426 32 FNFIRTLGTGSFGRVILATYKNEDFPPVAIKR 63 (340)
T ss_pred cEEEEEEeecCCeEEEEEEEECCCCeEEEEEE
Confidence 44467899999999999987543 5899995
No 109
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=93.03 E-value=0.044 Score=59.15 Aligned_cols=38 Identities=34% Similarity=0.497 Sum_probs=31.4
Q ss_pred HHHhhcCCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 404 SLQTATNSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 404 eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
|.+.--..|.-+..||+|+||.||+|+-.+|+.||+|.
T Consensus 692 ~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~ 729 (974)
T KOG1166|consen 692 EFEVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKV 729 (974)
T ss_pred eeeecceeEEEEeeeccccceEEEEeecCCCcEEEEEe
Confidence 33444455677789999999999999999999999995
No 110
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=92.99 E-value=0.075 Score=55.58 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=25.9
Q ss_pred cceeccCccceEEEEEecCC-cEEEEecC
Q 013460 415 EFLIGEGSLGRVYRAEFANG-KVIYCVRN 442 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~G-~~VAVKr~ 442 (442)
+++|.||||+.||.|....+ ..+|+||+
T Consensus 42 ~~vLAEGGFa~VYla~~~~~~~~~AlKrm 70 (738)
T KOG1989|consen 42 EKVLAEGGFAQVYLAQDVKGGKKYALKRM 70 (738)
T ss_pred EEEEccCCcEEEEEEEecCCCceeeeeee
Confidence 67999999999999999887 99999995
No 111
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.21 E-value=0.082 Score=26.43 Aligned_cols=8 Identities=38% Similarity=0.509 Sum_probs=2.9
Q ss_pred CEEEcccC
Q 013460 156 SYLNVSRN 163 (442)
Q Consensus 156 ~~L~L~~n 163 (442)
+.|+|++|
T Consensus 4 ~~L~l~~n 11 (17)
T PF13504_consen 4 RTLDLSNN 11 (17)
T ss_dssp SEEEETSS
T ss_pred CEEECCCC
Confidence 33333333
No 112
>PHA03209 serine/threonine kinase US3; Provisional
Probab=92.20 E-value=0.13 Score=50.08 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=28.1
Q ss_pred hcCCCCccceeccCccceEEEEEecC-CcEEEEec
Q 013460 408 ATNSFSQEFLIGEGSLGRVYRAEFAN-GKVIYCVR 441 (442)
Q Consensus 408 AT~~F~~~~~IG~GgfG~VYkg~L~~-G~~VAVKr 441 (442)
...+|.-.+.||+|+||.||+|...+ +..||+|.
T Consensus 64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~ 98 (357)
T PHA03209 64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKI 98 (357)
T ss_pred hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEe
Confidence 44578888899999999999998854 46899984
No 113
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.82 E-value=0.004 Score=55.13 Aligned_cols=81 Identities=20% Similarity=0.162 Sum_probs=46.6
Q ss_pred CcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEccc
Q 013460 131 LTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQN 210 (442)
Q Consensus 131 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 210 (442)
.+.||++.|++. .+-..|.-++.|..|+++.|.+. ..|..++.+..+..+++..|+++ ..|.+++..+.++++++..
T Consensus 44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence 334444444333 22233444555566666666664 45666666666666666666666 5666677777777777666
Q ss_pred CcCC
Q 013460 211 NQVT 214 (442)
Q Consensus 211 N~l~ 214 (442)
|.|.
T Consensus 121 ~~~~ 124 (326)
T KOG0473|consen 121 TEFF 124 (326)
T ss_pred Ccch
Confidence 6654
No 114
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=91.71 E-value=0.12 Score=56.20 Aligned_cols=27 Identities=22% Similarity=0.589 Sum_probs=22.3
Q ss_pred cceeccCccceEEEEEecC--Cc----EEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFAN--GK----VIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~--G~----~VAVKr 441 (442)
.+.||+|.||.||+|++.+ |. .||||.
T Consensus 697 ~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~ 729 (1025)
T KOG1095|consen 697 LRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKS 729 (1025)
T ss_pred eeeeccccccceEEEEEecCCCCccceEEEEEe
Confidence 5789999999999999955 32 389986
No 115
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.69 E-value=0.0023 Score=64.39 Aligned_cols=155 Identities=25% Similarity=0.295 Sum_probs=98.7
Q ss_pred CcEEEEEeCCCCCCcc----cchhccCC-CCCCEEEccCCCCCCCCCCCcc------CCCcEEEccCCcCCC----Cccc
Q 013460 83 SAVVSIDISGLGLSGT----MGYLLSDL-LSLRKFDLSGNSIHDTIPYQLP------PNLTSLNLASNNFSG----NLPY 147 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~------~~L~~L~Ls~n~l~~----~~p~ 147 (442)
.++..|++++|++.+. +-..+... ..|++|++..|.+++.....+. ..++.++++.|.+.. .++.
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~ 194 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ 194 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence 4677788888888732 22333333 5677788888887754332222 677888888887741 1223
Q ss_pred ccc----CCCCCCEEEcccCcCCCch----hhhhcCCCC-CcEEeCCCCCCCCC----CchhccCC-CCCCEEEcccCcC
Q 013460 148 SIA----SMVSLSYLNVSRNSLTQSI----GDIFGNLAG-LATLDLSFNNFSGD----LPNSFISL-SNISSLYLQNNQV 213 (442)
Q Consensus 148 ~~~----~l~~L~~L~L~~n~l~~~~----p~~~~~l~~-L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l 213 (442)
.+. ...++++|.|++|.++... ...+...+. +..|++.+|.+... ....+..+ ..+++++++.|.+
T Consensus 195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi 274 (478)
T KOG4308|consen 195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSI 274 (478)
T ss_pred hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCc
Confidence 333 4778888999988877321 223444555 66788888888743 22334455 6778899999988
Q ss_pred CccC-----ccCCCCC-ccEEEeecccCcc
Q 013460 214 TGSL-----NVFSGLP-LTTLNVANNHFSG 237 (442)
Q Consensus 214 ~~~~-----~~~~~l~-L~~L~ls~N~l~~ 237 (442)
+..- ..+...+ ++.+.+++|.+..
T Consensus 275 ~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 275 TEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 7532 1333344 8888888888864
No 116
>PHA03212 serine/threonine kinase US3; Provisional
Probab=91.50 E-value=0.17 Score=49.96 Aligned_cols=32 Identities=13% Similarity=0.012 Sum_probs=27.1
Q ss_pred CCCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
++|.-.+.||+|+||.||++.- ..++.||||+
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~ 124 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKA 124 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEec
Confidence 4577778999999999999976 4578999996
No 117
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=91.01 E-value=0.16 Score=52.54 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=27.1
Q ss_pred eHHHHHhhcCCCCccceeccCccceEEEEEecCCcEEEEe
Q 013460 401 TVASLQTATNSFSQEFLIGEGSLGRVYRAEFANGKVIYCV 440 (442)
Q Consensus 401 ~~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVK 440 (442)
++......+..+...++||+|+||+||+|.+.+.. +++|
T Consensus 324 ~~~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~-~v~k 362 (535)
T PRK09605 324 TWIKEEEVKRRKIPDHLIGKGAEADIKKGEYLGRD-AVIK 362 (535)
T ss_pred eeccccccccccCccceeccCCcEEEEEEeecCcc-ceeE
Confidence 33444444555566789999999999999986554 4443
No 118
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=90.98 E-value=0.14 Score=51.97 Aligned_cols=27 Identities=33% Similarity=0.706 Sum_probs=21.7
Q ss_pred ccceeccCccceEEEEEecC---Cc--EEEEe
Q 013460 414 QEFLIGEGSLGRVYRAEFAN---GK--VIYCV 440 (442)
Q Consensus 414 ~~~~IG~GgfG~VYkg~L~~---G~--~VAVK 440 (442)
-.++||+|-||.||+|++.+ |. -||||
T Consensus 393 l~r~iG~GqFGdVy~gvYt~~~kge~iaVAvK 424 (974)
T KOG4257|consen 393 LKRLIGEGQFGDVYKGVYTDPEKGERIAVAVK 424 (974)
T ss_pred HHHhhcCCcccceeeeEecccccCcceeeeee
Confidence 36799999999999999944 33 48887
No 119
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=90.76 E-value=0.27 Score=46.74 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=30.4
Q ss_pred cceeHHHHHhhcCCCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 398 TSYTVASLQTATNSFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 398 ~~f~~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
..+++.||+. -+.||+|..|+|||+... +++..|.|.
T Consensus 74 ~~i~~~dle~-------~~~lG~G~gG~V~kv~Hk~t~~i~AlK~ 111 (364)
T KOG0581|consen 74 NGISLSDLER-------LGVLGSGNGGTVYKVRHKPTGKIYALKV 111 (364)
T ss_pred cccCHHHhhh-------hhhcccCCCcEEEEEEEcCCCeEEEEEe
Confidence 3477888887 568999999999999995 566789886
No 120
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=90.75 E-value=0.064 Score=33.39 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=10.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhh
Q 013460 303 GAIVGIVLGAVFLVALALLALYFCIR 328 (442)
Q Consensus 303 ~~ii~iv~~~~~~~~~~~~~~~~~~r 328 (442)
.+.+++++.++++++++.+++++++|
T Consensus 12 aIa~~VvVPV~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 12 AIAVGVVVPVGVIIIVLGAFLFFWYR 37 (40)
T ss_pred EEEEEEEechHHHHHHHHHHhheEEe
Confidence 34444444443333333333333333
No 121
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=90.74 E-value=0.14 Score=48.51 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=24.4
Q ss_pred CCCccceeccCccceEEEEEe------cCCcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEF------ANGKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L------~~G~~VAVKr 441 (442)
+|.-.+.||+|+||.||+|.. .++..||||+
T Consensus 36 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~ 72 (302)
T cd05055 36 NLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKM 72 (302)
T ss_pred HeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEe
Confidence 455678999999999999974 2345799985
No 122
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=90.59 E-value=0.23 Score=49.43 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=25.8
Q ss_pred CCCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
++|.--.+||+|+||.||.+.-+ .|.+.|.|+
T Consensus 141 ~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~ 173 (550)
T KOG0605|consen 141 DDFELLKVIGKGAFGEVRLARKKDTGEIYAMKI 173 (550)
T ss_pred ccchhheeeccccceeEEEEEEccCCcEEeeec
Confidence 44555568999999999999774 478899985
No 123
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.12 E-value=0.0061 Score=53.97 Aligned_cols=87 Identities=24% Similarity=0.255 Sum_probs=74.1
Q ss_pred cccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-cc
Q 013460 148 SIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LT 226 (442)
Q Consensus 148 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~ 226 (442)
.+......+.||++.|++-. +-..|+-++.|..||++.|++. ..|..++.+..+.++++..|.++..+.++..++ ++
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 45667788999999999863 3445677888999999999998 789999999999999999999998888888888 99
Q ss_pred EEEeecccCc
Q 013460 227 TLNVANNHFS 236 (442)
Q Consensus 227 ~L~ls~N~l~ 236 (442)
++++-.|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 9999988865
No 124
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.15 E-value=0.38 Score=26.82 Aligned_cols=13 Identities=54% Similarity=0.621 Sum_probs=5.6
Q ss_pred CCcEEeCCCCCCC
Q 013460 178 GLATLDLSFNNFS 190 (442)
Q Consensus 178 ~L~~L~Ls~N~l~ 190 (442)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 125
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.15 E-value=0.38 Score=26.82 Aligned_cols=13 Identities=54% Similarity=0.621 Sum_probs=5.6
Q ss_pred CCcEEeCCCCCCC
Q 013460 178 GLATLDLSFNNFS 190 (442)
Q Consensus 178 ~L~~L~Ls~N~l~ 190 (442)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 126
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=89.10 E-value=0.31 Score=47.84 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=24.3
Q ss_pred ceeccCccceEEEEEecC-CcEEEEecC
Q 013460 416 FLIGEGSLGRVYRAEFAN-GKVIYCVRN 442 (442)
Q Consensus 416 ~~IG~GgfG~VYkg~L~~-G~~VAVKr~ 442 (442)
++||+|.||.||+++-+. |+.+|+|.+
T Consensus 41 ~~lG~G~Fg~v~~~~~~~tg~~~A~K~i 68 (382)
T KOG0032|consen 41 RELGRGQFGVVYLCREKSTGKEVACKVI 68 (382)
T ss_pred hhhCCCCceEEEEEEecCCCceeEEEEe
Confidence 579999999999999977 899999964
No 127
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=88.56 E-value=0.14 Score=49.37 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=27.9
Q ss_pred cCCCCccceeccCccceEEEEEecC----CcEEEEecC
Q 013460 409 TNSFSQEFLIGEGSLGRVYRAEFAN----GKVIYCVRN 442 (442)
Q Consensus 409 T~~F~~~~~IG~GgfG~VYkg~L~~----G~~VAVKr~ 442 (442)
.+.|...++||+|.|++||+|++.. .+.||+|+.
T Consensus 35 ~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i 72 (418)
T KOG1167|consen 35 SNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAI 72 (418)
T ss_pred hhhhhhhccccccchhhhhhhhHhhhccccceEeeeec
Confidence 3556778999999999999999865 457999973
No 128
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.91 E-value=0.093 Score=45.71 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=55.0
Q ss_pred CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCch-hhhhc-CCCCCcEEeCCCC-CCCCCCchhccCCCCCCE
Q 013460 129 PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSI-GDIFG-NLAGLATLDLSFN-NFSGDLPNSFISLSNISS 205 (442)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~-~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~ 205 (442)
..++.++-++..|....-+.+.++..|+.|.+.++.--+.. -+.++ -.++|+.|+|++| +|+..--..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 45667777777777666677788888888888877632210 01122 2478899999976 566555566777888887
Q ss_pred EEccc
Q 013460 206 LYLQN 210 (442)
Q Consensus 206 L~Ls~ 210 (442)
|.|.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 77654
No 129
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.85 E-value=0.46 Score=48.79 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=25.8
Q ss_pred CCCCccceeccCccceEEEEEecC-CcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFAN-GKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~~-G~~VAVKr 441 (442)
++|.--.+||+|+||.||.+.+.+ +...|||.
T Consensus 368 ~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~ 400 (694)
T KOG0694|consen 368 DDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKV 400 (694)
T ss_pred cceEEEEEeccCcCceEEEEEEcCCCcEEEEEE
Confidence 455557899999999999999954 56789883
No 130
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=87.29 E-value=0.34 Score=50.00 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=21.6
Q ss_pred ceeccCccceEEEEEe--cCCc--EEEEec
Q 013460 416 FLIGEGSLGRVYRAEF--ANGK--VIYCVR 441 (442)
Q Consensus 416 ~~IG~GgfG~VYkg~L--~~G~--~VAVKr 441 (442)
++||+|.||+|++|.+ ++|. .||||.
T Consensus 116 e~LG~GsFgvV~rg~Wt~psgk~V~VAVKc 145 (1039)
T KOG0199|consen 116 ELLGEGSFGVVKRGTWTQPSGKHVNVAVKC 145 (1039)
T ss_pred HHhcCcceeeEeeccccCCCCcEEeEEEEe
Confidence 4799999999999977 5565 489984
No 131
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=87.01 E-value=0.44 Score=47.25 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=29.0
Q ss_pred cceeHHHHHhhcCCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 398 TSYTVASLQTATNSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 398 ~~f~~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
..+.-++|.. .+.||+|-||.||.|.+++-..||||-
T Consensus 201 wei~r~~l~l-------~~~LG~G~FG~V~~g~~~~~~~vavk~ 237 (468)
T KOG0197|consen 201 WEIPREELKL-------IRELGSGQFGEVWLGKWNGSTKVAVKT 237 (468)
T ss_pred eeecHHHHHH-------HHHhcCCccceEEEEEEcCCCcccceE
Confidence 3455556554 457999999999999997766899984
No 132
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.98 E-value=0.66 Score=25.84 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=8.5
Q ss_pred CCCCEEEcccCcCCC
Q 013460 153 VSLSYLNVSRNSLTQ 167 (442)
Q Consensus 153 ~~L~~L~L~~n~l~~ 167 (442)
++|++|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 455666666666553
No 133
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.98 E-value=0.66 Score=25.84 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=8.5
Q ss_pred CCCCEEEcccCcCCC
Q 013460 153 VSLSYLNVSRNSLTQ 167 (442)
Q Consensus 153 ~~L~~L~L~~n~l~~ 167 (442)
++|++|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 455666666666553
No 134
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=86.93 E-value=0.33 Score=48.92 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=28.8
Q ss_pred cceeHHHHHhhcCCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 398 TSYTVASLQTATNSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 398 ~~f~~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
..+.|++|.. -..||+|.-|.||.|.|. +..|||||
T Consensus 119 WeiPFe~IsE-------LeWlGSGaQGAVF~Grl~-netVAVKK 154 (904)
T KOG4721|consen 119 WEIPFEEISE-------LEWLGSGAQGAVFLGRLH-NETVAVKK 154 (904)
T ss_pred ccCCHHHhhh-------hhhhccCcccceeeeecc-CceehhHH
Confidence 3456666654 347999999999999996 58999997
No 135
>PHA03207 serine/threonine kinase US3; Provisional
Probab=86.67 E-value=0.56 Score=46.30 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=24.5
Q ss_pred CCCccceeccCccceEEEEEecC---CcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEFAN---GKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L~~---G~~VAVKr 441 (442)
.|.-...||+|+||.||++...+ +..||||+
T Consensus 93 ~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~ 126 (392)
T PHA03207 93 QYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKA 126 (392)
T ss_pred ceEEEEeecCCCCeEEEEEEEcCCccceeEEEEe
Confidence 45556789999999999997643 46799986
No 136
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=86.41 E-value=0.28 Score=43.10 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=23.0
Q ss_pred cceeccCccceEEEEEe-cCCcEEEEecC
Q 013460 415 EFLIGEGSLGRVYRAEF-ANGKVIYCVRN 442 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L-~~G~~VAVKr~ 442 (442)
..-||+|+||.|=|-.+ .+|+.+||||.
T Consensus 51 i~elGrGayG~vekmrh~~sg~imAvKri 79 (282)
T KOG0984|consen 51 IEELGRGAYGVVEKMRHIQSGTIMAVKRI 79 (282)
T ss_pred hhhhcCCccchhhheeeccCCeEEEEeee
Confidence 45699999999877655 57899999984
No 137
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=86.37 E-value=0.13 Score=49.95 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=22.1
Q ss_pred ceeccCccceEEEE-EecCCcEEEEec
Q 013460 416 FLIGEGSLGRVYRA-EFANGKVIYCVR 441 (442)
Q Consensus 416 ~~IG~GgfG~VYkg-~L~~G~~VAVKr 441 (442)
++||+|||..|||| -+.+.+.||||-
T Consensus 469 hLLGrGGFSEVyKAFDl~EqRYvAvKI 495 (775)
T KOG1151|consen 469 HLLGRGGFSEVYKAFDLTEQRYVAVKI 495 (775)
T ss_pred HHhccccHHHHHHhcccchhheeeEee
Confidence 68999999999999 456667899984
No 138
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.15 E-value=0.22 Score=27.29 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=6.6
Q ss_pred CCCCEEEcccCcCCC
Q 013460 153 VSLSYLNVSRNSLTQ 167 (442)
Q Consensus 153 ~~L~~L~L~~n~l~~ 167 (442)
++|++|+|++|+|+.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555543
No 139
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=85.42 E-value=0.52 Score=48.00 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=27.2
Q ss_pred CCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
..|++ +=|+.++-|.||+|+|.+|+.||||.
T Consensus 126 ~eF~~-~PiAsASIaQVH~A~L~sG~~VAVKV 156 (517)
T COG0661 126 SEFEP-EPIASASIAQVHRAVLKSGEEVAVKV 156 (517)
T ss_pred HHcCC-CchhhhhHhhheeEEecCCCEEEEEe
Confidence 45664 57899999999999999999999995
No 140
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=85.22 E-value=2.4 Score=30.75 Aligned_cols=36 Identities=36% Similarity=0.686 Sum_probs=23.9
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 013460 298 KELPAGAIVGIVLGAVFLVALALLALYFCIRKNRRK 333 (442)
Q Consensus 298 ~~~~~~~ii~iv~~~~~~~~~~~~~~~~~~r~~~~~ 333 (442)
...+..+++||+++=+++.++++.+.|+|-|.++++
T Consensus 29 ~~ls~g~LaGiV~~D~vlTLLIv~~vy~car~r~r~ 64 (79)
T PF07213_consen 29 YPLSPGLLAGIVAADAVLTLLIVLVVYYCARPRRRP 64 (79)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 345667889999887776666666666665544443
No 141
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=85.17 E-value=0.63 Score=43.88 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.7
Q ss_pred ccceeccCccceEEEEE-ecCCcEEEEec
Q 013460 414 QEFLIGEGSLGRVYRAE-FANGKVIYCVR 441 (442)
Q Consensus 414 ~~~~IG~GgfG~VYkg~-L~~G~~VAVKr 441 (442)
-...||+|.||+.+.|+ |-+++.||||-
T Consensus 32 VGkKIGeGsFG~lf~G~Nl~nne~VAIKf 60 (449)
T KOG1165|consen 32 VGKKIGEGSFGVLFLGKNLYNNEPVAIKF 60 (449)
T ss_pred eccccccCcceeeecccccccCceEEEEe
Confidence 36789999999999994 56789999993
No 142
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=84.33 E-value=0.37 Score=39.83 Aligned_cols=9 Identities=33% Similarity=1.010 Sum_probs=4.3
Q ss_pred chhhHHHHH
Q 013460 303 GAIVGIVLG 311 (442)
Q Consensus 303 ~~ii~iv~~ 311 (442)
.+++|+++|
T Consensus 49 nIVIGvVVG 57 (154)
T PF04478_consen 49 NIVIGVVVG 57 (154)
T ss_pred cEEEEEEec
Confidence 345555444
No 143
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=84.25 E-value=0.35 Score=37.11 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=10.8
Q ss_pred CCCCcchhhHHHHHHHHH
Q 013460 298 KELPAGAIVGIVLGAVFL 315 (442)
Q Consensus 298 ~~~~~~~ii~iv~~~~~~ 315 (442)
+.++...|+||+++++++
T Consensus 61 ~~ls~gaiagi~vg~~~~ 78 (96)
T PTZ00382 61 SGLSTGAIAGISVAVVAV 78 (96)
T ss_pred CCcccccEEEEEeehhhH
Confidence 445566777776665443
No 144
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.83 E-value=0.14 Score=44.63 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=43.6
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCC-----CCCCccCCCcEEEccCC-cCCCCccccccCCCCCC
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDT-----IPYQLPPNLTSLNLASN-NFSGNLPYSIASMVSLS 156 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~p~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~ 156 (442)
..|+.+|-++..|..+--..+.+++.|+.|.+.++.--+. +.. +.++|+.|+|++| +||..--..+..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 4688888888888766666777788888888777642210 111 2255666666544 34433223333444444
Q ss_pred EEEc
Q 013460 157 YLNV 160 (442)
Q Consensus 157 ~L~L 160 (442)
.|.+
T Consensus 180 ~L~l 183 (221)
T KOG3864|consen 180 RLHL 183 (221)
T ss_pred HHHh
Confidence 4433
No 145
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=83.65 E-value=0.31 Score=49.31 Aligned_cols=110 Identities=22% Similarity=0.165 Sum_probs=58.9
Q ss_pred CCCCCCEEEccCCC-CCC--CCCCCcc-CCCcEEEccCC-cCCCCc----cccccCCCCCCEEEcccCc-CCCchhhhhc
Q 013460 105 DLLSLRKFDLSGNS-IHD--TIPYQLP-PNLTSLNLASN-NFSGNL----PYSIASMVSLSYLNVSRNS-LTQSIGDIFG 174 (442)
Q Consensus 105 ~l~~L~~L~l~~n~-l~~--~~p~~~~-~~L~~L~Ls~n-~l~~~~----p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~ 174 (442)
.++.|+.|.+.++. +.. ..+.... ++|+.|+++++ ...... ......+.+|+.|++++.. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 35667777766653 222 1121112 77777777762 111111 1223345677777777776 5543333333
Q ss_pred -CCCCCcEEeCCCCC-CCCCCc-hhccCCCCCCEEEcccCcCC
Q 013460 175 -NLAGLATLDLSFNN-FSGDLP-NSFISLSNISSLYLQNNQVT 214 (442)
Q Consensus 175 -~l~~L~~L~Ls~N~-l~~~~p-~~l~~l~~L~~L~Ls~N~l~ 214 (442)
.+++|++|.+.++. ++...- .....++.|++|+|+.+...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 26778888766665 443322 22345677888888766553
No 146
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=83.48 E-value=1 Score=45.91 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=22.9
Q ss_pred cceeccCccceEEEEEecC-CcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFAN-GKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~-G~~VAVKr 441 (442)
..+||+|.||.|-|++=.. ++.||||-
T Consensus 191 ~e~LGkGtFGQVvk~~d~~T~e~VAIKI 218 (586)
T KOG0667|consen 191 LEVLGKGSFGQVVKAYDHKTGEIVAIKI 218 (586)
T ss_pred EEEecccccceeEEEEecCCCcEEEEEe
Confidence 4589999999999997644 88999994
No 147
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=82.29 E-value=0.39 Score=33.24 Aligned_cols=14 Identities=43% Similarity=0.653 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHH
Q 013460 302 AGAIVGIVLGAVFL 315 (442)
Q Consensus 302 ~~~ii~iv~~~~~~ 315 (442)
+++|+|+++++++.
T Consensus 12 aavIaG~Vvgll~a 25 (64)
T PF01034_consen 12 AAVIAGGVVGLLFA 25 (64)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555544333
No 148
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=81.92 E-value=0.87 Score=33.18 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=13.8
Q ss_pred ceeHHHHHhhcCCCCcc
Q 013460 399 SYTVASLQTATNSFSQE 415 (442)
Q Consensus 399 ~f~~~eL~~AT~~F~~~ 415 (442)
-+||+|...|-..|.++
T Consensus 56 P~TYEDP~qAV~eFAkE 72 (75)
T PF14575_consen 56 PHTYEDPNQAVREFAKE 72 (75)
T ss_dssp GGGSSSHHHHHHHCSSB
T ss_pred cccccCHHHHHHHHHhh
Confidence 37899999998888764
No 149
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=81.77 E-value=0.7 Score=46.39 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=38.0
Q ss_pred CCCCCcEEeCCCCCCCCC--CchhccCCCCCCEEEcccC--cCCc--cCccCCCCCccEEEeecccCccc
Q 013460 175 NLAGLATLDLSFNNFSGD--LPNSFISLSNISSLYLQNN--QVTG--SLNVFSGLPLTTLNVANNHFSGW 238 (442)
Q Consensus 175 ~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N--~l~~--~~~~~~~l~L~~L~ls~N~l~~~ 238 (442)
+.+.+..++|++|++... +-+.-...++|..|+|++| .+.. .++-++.++|+.|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 345666667777766522 1112234567777888877 3332 22345666688888888887654
No 150
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.09 E-value=0.82 Score=41.82 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=23.9
Q ss_pred ccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 414 QEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 414 ~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
+++-||-|.||+||-.+= +||+.||.||
T Consensus 57 PDRPIGYGAFGVVWsVTDPRdgrrvalkK 85 (449)
T KOG0664|consen 57 PDRPIGYGAFGVVWSVTDPRSGKRVALKK 85 (449)
T ss_pred CCCcccccceeEEEeccCCCCccchhHhh
Confidence 477899999999997765 6789999987
No 151
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=79.66 E-value=0.5 Score=46.29 Aligned_cols=32 Identities=28% Similarity=0.603 Sum_probs=24.7
Q ss_pred CCCCccceeccCccceEEEEEecC-CcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFAN-GKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~~-G~~VAVKr 441 (442)
+.|..-++||+||||.||--+.++ |+..|.|+
T Consensus 185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKk 217 (591)
T KOG0986|consen 185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKK 217 (591)
T ss_pred cceeeeEEEecccccceeEEEEecchhhHHHHH
Confidence 458888999999999999887643 56666553
No 152
>PHA03210 serine/threonine kinase US3; Provisional
Probab=79.43 E-value=0.81 Score=46.90 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=19.9
Q ss_pred CCCCccceeccCccceEEEEEecC
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFAN 433 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~~ 433 (442)
++|.-.+.||+|+||.||++.++.
T Consensus 148 ~~Y~ii~~LG~G~fG~Vyl~~~~~ 171 (501)
T PHA03210 148 AHFRVIDDLPAGAFGKIFICALRA 171 (501)
T ss_pred hccEEEeEecCCCCcceEEEEEec
Confidence 567667899999999999987743
No 153
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=78.69 E-value=1.6 Score=45.40 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=22.4
Q ss_pred cceeccCccceEEEEEecCCc-EEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFANGK-VIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~G~-~VAVKr 441 (442)
.-+||+|-||+||-|.=.+-+ .+|||-
T Consensus 580 rvVLGKGTYG~VYA~RD~~tqvrIaIKE 607 (1226)
T KOG4279|consen 580 RVVLGKGTYGTVYAARDMDTQVRIAIKE 607 (1226)
T ss_pred eEEeecCceeEEEeeccccceeEEEeee
Confidence 458999999999999776655 489985
No 154
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=78.05 E-value=1.8 Score=44.21 Aligned_cols=33 Identities=27% Similarity=0.310 Sum_probs=27.4
Q ss_pred hcCCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 408 ATNSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 408 AT~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
.-..|++ .-||.-+.|.||||+|++|+.||||.
T Consensus 160 if~~f~~-~piaaASlaQVhrA~L~~G~~VaVKV 192 (538)
T KOG1235|consen 160 IFSEFDE-EPIAAASLAQVHRARLKNGEDVAVKV 192 (538)
T ss_pred HHHhcCc-chhhhcchhheEEEEecCCCEEEEEe
Confidence 3345664 46899999999999999999999995
No 155
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=76.88 E-value=1.4 Score=44.24 Aligned_cols=32 Identities=34% Similarity=0.331 Sum_probs=25.6
Q ss_pred CCCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
++|.-..+||+|+|.+||+|+= ..++..|||.
T Consensus 73 ~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKV 105 (604)
T KOG0592|consen 73 NDFKFGKILGEGSYSTVVLAREKATGKEYAIKV 105 (604)
T ss_pred hhcchhheeccccceeEEEeeecCCCceeeHhh
Confidence 4455567999999999999965 5577899984
No 156
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=76.71 E-value=2.4 Score=41.17 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=23.2
Q ss_pred cceeccCccceEEEEEe-cCCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
++.||+|+||.|-+|.= .+|+.||||-
T Consensus 177 ~~~LGsGafg~Vkla~e~~tgk~vAiKI 204 (475)
T KOG0615|consen 177 SKTLGSGAFGLVKLAYEKKTGKQVAIKI 204 (475)
T ss_pred eeeecCCceeEEEEEEEcccCcEEEeee
Confidence 46799999999999954 6789999994
No 157
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=75.98 E-value=1.1 Score=45.16 Aligned_cols=108 Identities=21% Similarity=0.159 Sum_probs=67.9
Q ss_pred CCCcEEEccCCcCCCC--ccccccCCCCCCEEEcccC-cCCCch----hhhhcCCCCCcEEeCCCCC-CCCCCchhcc-C
Q 013460 129 PNLTSLNLASNNFSGN--LPYSIASMVSLSYLNVSRN-SLTQSI----GDIFGNLAGLATLDLSFNN-FSGDLPNSFI-S 199 (442)
Q Consensus 129 ~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n-~l~~~~----p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~-~ 199 (442)
+.|+.|.+.++.-... +-.....++.|+.|+++++ ...... ......+.+|+.|+++++. ++...-..+. .
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 6778887777643322 3344567889999999873 211111 1234456888999999887 5544334443 3
Q ss_pred CCCCCEEEcccCc-CCc--cCccCCCCC-ccEEEeecccCc
Q 013460 200 LSNISSLYLQNNQ-VTG--SLNVFSGLP-LTTLNVANNHFS 236 (442)
Q Consensus 200 l~~L~~L~Ls~N~-l~~--~~~~~~~l~-L~~L~ls~N~l~ 236 (442)
+++|+.|.+.++. +++ ........+ |+.|+++.+...
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 7889999977776 543 222344455 899999877653
No 158
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=75.69 E-value=2.6 Score=42.86 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=21.7
Q ss_pred cceeccCccceEEEEEecC--CcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFAN--GKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~--G~~VAVKr 441 (442)
.++||+|+||.||+|.-.. +..||+|+
T Consensus 72 ~~~lg~G~~g~vy~a~~~~~~~~~vv~K~ 100 (478)
T PTZ00267 72 TTLVGRNPTTAAFVATRGSDPKEKVVAKF 100 (478)
T ss_pred EEEEEeCCCcEEEEEEEcCCCCeEEEEEE
Confidence 5689999999999997533 46788885
No 159
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=74.33 E-value=2.5 Score=37.10 Aligned_cols=20 Identities=15% Similarity=0.421 Sum_probs=10.5
Q ss_pred cchhhHHHHHHHHHHHHHHH
Q 013460 302 AGAIVGIVLGAVFLVALALL 321 (442)
Q Consensus 302 ~~~ii~iv~~~~~~~~~~~~ 321 (442)
..+++||++|++.+++++++
T Consensus 37 ~~I~iaiVAG~~tVILVI~i 56 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFI 56 (221)
T ss_pred eeeeeeeecchhhhHHHHHH
Confidence 34666666665544444333
No 160
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.40 E-value=3.1 Score=23.38 Aligned_cols=14 Identities=43% Similarity=0.546 Sum_probs=7.3
Q ss_pred CCCcEEeCCCCCCC
Q 013460 177 AGLATLDLSFNNFS 190 (442)
Q Consensus 177 ~~L~~L~Ls~N~l~ 190 (442)
.+|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 161
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=73.38 E-value=2.9 Score=37.92 Aligned_cols=32 Identities=3% Similarity=-0.203 Sum_probs=26.8
Q ss_pred cCCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 409 TNSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 409 T~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
.+.+...+++|.||||.||...- ++..+|||.
T Consensus 30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKv 61 (232)
T PRK10359 30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKV 61 (232)
T ss_pred hCceEEEEEecCCCceEEEEEec-CCCcEEEEE
Confidence 46777789999999999999766 567899984
No 162
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=72.56 E-value=3.4 Score=38.83 Aligned_cols=10 Identities=10% Similarity=0.474 Sum_probs=3.9
Q ss_pred hhHHHHHHHH
Q 013460 305 IVGIVLGAVF 314 (442)
Q Consensus 305 ii~iv~~~~~ 314 (442)
+++.++++++
T Consensus 258 I~aSiiaIli 267 (299)
T PF02009_consen 258 IIASIIAILI 267 (299)
T ss_pred HHHHHHHHHH
Confidence 3343443333
No 163
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.23 E-value=2.6 Score=23.64 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=7.4
Q ss_pred CCcEEeCCCCCCC
Q 013460 178 GLATLDLSFNNFS 190 (442)
Q Consensus 178 ~L~~L~Ls~N~l~ 190 (442)
+|+.|++++|+|+
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 164
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=72.19 E-value=4.6 Score=32.40 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=17.1
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 013460 301 PAGAIVGIVLGAVFLVALALLALYFCIRKN 330 (442)
Q Consensus 301 ~~~~ii~iv~~~~~~~~~~~~~~~~~~r~~ 330 (442)
..++++|+++|+++.++ ++.++++++|++
T Consensus 66 i~~Ii~gv~aGvIg~Il-li~y~irR~~Kk 94 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL-LISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHS--
T ss_pred eeehhHHHHHHHHHHHH-HHHHHHHHHhcc
Confidence 46677777777765554 445556666644
No 165
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=70.44 E-value=4.1 Score=37.54 Aligned_cols=35 Identities=23% Similarity=0.519 Sum_probs=27.2
Q ss_pred eeHHHHHhhcCCCCccceeccCccceEEEEEecC-CcEEEEec
Q 013460 400 YTVASLQTATNSFSQEFLIGEGSLGRVYRAEFAN-GKVIYCVR 441 (442)
Q Consensus 400 f~~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~-G~~VAVKr 441 (442)
-...||+... .||.|..|+|+|.+++. |..+|||.
T Consensus 89 ~dindl~~l~-------dlGsGtcG~V~k~~~rs~~~iiAVK~ 124 (391)
T KOG0983|consen 89 ADINDLENLG-------DLGSGTCGQVWKMRFRSTGHIIAVKQ 124 (391)
T ss_pred cChHHhhhHH-------hhcCCCccceEEEEEcccceEEEEEe
Confidence 3456666532 59999999999999965 78899994
No 166
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=70.05 E-value=3.5 Score=41.60 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.5
Q ss_pred ceeccCccceEEEE-EecCCcEEEEec
Q 013460 416 FLIGEGSLGRVYRA-EFANGKVIYCVR 441 (442)
Q Consensus 416 ~~IG~GgfG~VYkg-~L~~G~~VAVKr 441 (442)
..||+|..|.||-| +...++.|||||
T Consensus 279 ~kigqgaSG~vy~A~~~~~~~~VaiK~ 305 (550)
T KOG0578|consen 279 KKIGQGATGGVYVARKISTKQEVAIKR 305 (550)
T ss_pred hhhccccccceeeeeeccCCceEEEEE
Confidence 46999999999999 456788999997
No 167
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=69.74 E-value=15 Score=22.67 Aligned_cols=27 Identities=11% Similarity=0.433 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013460 306 VGIVLGAVFLVALALLALYFCIRKNRR 332 (442)
Q Consensus 306 i~iv~~~~~~~~~~~~~~~~~~r~~~~ 332 (442)
++|++++++.+++++++++++...+|+
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344444444444444455555565444
No 168
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=68.08 E-value=15 Score=28.11 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=14.7
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHH
Q 013460 299 ELPAGAIVGIVLGAVFLVALALLA 322 (442)
Q Consensus 299 ~~~~~~ii~iv~~~~~~~~~~~~~ 322 (442)
..++..++|+++++++..++++++
T Consensus 14 g~sW~~LVGVv~~al~~SlLIala 37 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALA 37 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHH
Confidence 455667788877766554444444
No 169
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=67.38 E-value=3.6 Score=43.25 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=21.7
Q ss_pred cceeccCccceEEEEEecC--------CcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFAN--------GKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~--------G~~VAVKr 441 (442)
.+.+|+|.||.|++|.+.+ ...||||.
T Consensus 301 ~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~ 335 (609)
T KOG0200|consen 301 GKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKM 335 (609)
T ss_pred cceeecccccceEeEEEeecccccccceEEEEEEe
Confidence 3489999999999998731 34699996
No 170
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.30 E-value=5 Score=22.82 Aligned_cols=13 Identities=46% Similarity=0.578 Sum_probs=7.6
Q ss_pred CCcEEeCCCCCCC
Q 013460 178 GLATLDLSFNNFS 190 (442)
Q Consensus 178 ~L~~L~Ls~N~l~ 190 (442)
+|++|||++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666666554
No 171
>PF15102 TMEM154: TMEM154 protein family
Probab=62.63 E-value=4.6 Score=33.25 Aligned_cols=9 Identities=11% Similarity=0.231 Sum_probs=5.0
Q ss_pred ceeHHHHHh
Q 013460 399 SYTVASLQT 407 (442)
Q Consensus 399 ~f~~~eL~~ 407 (442)
.+..+||.+
T Consensus 124 eiEmeeldk 132 (146)
T PF15102_consen 124 EIEMEELDK 132 (146)
T ss_pred hhhHHHHHh
Confidence 455666654
No 172
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=62.27 E-value=2.8 Score=40.89 Aligned_cols=152 Identities=18% Similarity=0.207 Sum_probs=83.1
Q ss_pred CcEEEEEeCCCCC-Ccc-cchhccCCCCCCEEEccCCCC-CCCCCCCcc---CCCcEEEccCCc-CCCCccccc-cCCCC
Q 013460 83 SAVVSIDISGLGL-SGT-MGYLLSDLLSLRKFDLSGNSI-HDTIPYQLP---PNLTSLNLASNN-FSGNLPYSI-ASMVS 154 (442)
Q Consensus 83 ~~l~~L~L~~n~l-~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~p~~~~---~~L~~L~Ls~n~-l~~~~p~~~-~~l~~ 154 (442)
.-|..+++..++. +.. +-..-..+..|+.|+.++..- ++..-..+. .+|+.|-++.++ |+..-...+ .+...
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 3466777666543 221 112233456788888877643 222222222 788888888775 332221222 25677
Q ss_pred CCEEEcccCcCCC--chhhhhcCCCCCcEEeCCCCCCCCCC-----chhccCCCCCCEEEcccCcCCc--cCccCCCCC-
Q 013460 155 LSYLNVSRNSLTQ--SIGDIFGNLAGLATLDLSFNNFSGDL-----PNSFISLSNISSLYLQNNQVTG--SLNVFSGLP- 224 (442)
Q Consensus 155 L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~l~- 224 (442)
|+.|++......- .+-..-.+++.|+.|.|+++.+.... ...-..+..|+.+-|+++.... ....+...+
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 8888887776431 12222345688888888877654221 1122355677888888877643 122333334
Q ss_pred ccEEEeeccc
Q 013460 225 LTTLNVANNH 234 (442)
Q Consensus 225 L~~L~ls~N~ 234 (442)
|+.+++-.++
T Consensus 428 Leri~l~~~q 437 (483)
T KOG4341|consen 428 LERIELIDCQ 437 (483)
T ss_pred cceeeeechh
Confidence 6666665543
No 173
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=62.07 E-value=1.6 Score=33.91 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=1.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 013460 304 AIVGIVLGAVFLVALALLALYFCIRKN 330 (442)
Q Consensus 304 ~ii~iv~~~~~~~~~~~~~~~~~~r~~ 330 (442)
-.+||.+.++++.+++++.+|+|+||.
T Consensus 25 EAaGIGiL~VILgiLLliGCWYckRRS 51 (118)
T PF14991_consen 25 EAAGIGILIVILGILLLIGCWYCKRRS 51 (118)
T ss_dssp ---SSS---------------------
T ss_pred HhccceeHHHHHHHHHHHhheeeeecc
Confidence 344454444444455555667766654
No 174
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.42 E-value=5.6 Score=40.19 Aligned_cols=64 Identities=23% Similarity=0.261 Sum_probs=37.5
Q ss_pred CCCCCCEEEcccCcCCCc--hhhhhcCCCCCcEEeCCCC--CCCCCCchhccC--CCCCCEEEcccCcCCcc
Q 013460 151 SMVSLSYLNVSRNSLTQS--IGDIFGNLAGLATLDLSFN--NFSGDLPNSFIS--LSNISSLYLQNNQVTGS 216 (442)
Q Consensus 151 ~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~ 216 (442)
+.+.+..++|++|++... +...-...++|..|+|++| .+.. -.++.. ...|++|-|.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 456677777777777532 1112233477888888888 3331 122322 23567888888887653
No 175
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=58.67 E-value=11 Score=34.40 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=21.9
Q ss_pred cceec-cCccceEEEEEecCCcEEEEec
Q 013460 415 EFLIG-EGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG-~GgfG~VYkg~L~~G~~VAVKr 441 (442)
..+|| .||.|+||+.... |..+|||+
T Consensus 36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk~ 62 (239)
T PRK01723 36 ARVVGSAKGRGTTWFVQTP-GVNWVLRH 62 (239)
T ss_pred CceeecCCCCccEEEEEeC-CceEEEEE
Confidence 56898 9999999999995 66788875
No 176
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=58.39 E-value=2.9 Score=34.64 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=13.8
Q ss_pred CCCCCCCcchhhHHHHHHHH
Q 013460 295 SSDKELPAGAIVGIVLGAVF 314 (442)
Q Consensus 295 ~~~~~~~~~~ii~iv~~~~~ 314 (442)
.+.+....++++||.+++++
T Consensus 45 ~knknIVIGvVVGVGg~ill 64 (154)
T PF04478_consen 45 SKNKNIVIGVVVGVGGPILL 64 (154)
T ss_pred cCCccEEEEEEecccHHHHH
Confidence 34456778899998776544
No 177
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=58.34 E-value=13 Score=38.37 Aligned_cols=28 Identities=11% Similarity=0.271 Sum_probs=16.2
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhh
Q 013460 301 PAGAIVGIVLGAVFLVALALLALYFCIR 328 (442)
Q Consensus 301 ~~~~ii~iv~~~~~~~~~~~~~~~~~~r 328 (442)
..|+|+|+++.++++++++++++|+++|
T Consensus 268 NlWII~gVlvPv~vV~~Iiiil~~~LCR 295 (684)
T PF12877_consen 268 NLWIIAGVLVPVLVVLLIIIILYWKLCR 295 (684)
T ss_pred CeEEEehHhHHHHHHHHHHHHHHHHHhc
Confidence 3577788776665555554444444444
No 178
>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2
Probab=57.70 E-value=11 Score=33.31 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=25.9
Q ss_pred CCCCccceeccCcc-ceEEEEEecCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSL-GRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~Ggf-G~VYkg~L~~G~~VAVKr 441 (442)
.+|.--+.||+|.. |.|||..+ +|+..|+|-
T Consensus 37 ~~I~flefLg~g~~~~~V~kv~I-~g~~YALKl 68 (207)
T PF13095_consen 37 DDIEFLEFLGHGSHDGYVFKVEI-DGRIYALKL 68 (207)
T ss_pred CcEeeeeecCCCCceeEEEEEEE-CCeEEEEEE
Confidence 44555678999999 99999999 678999994
No 179
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=57.30 E-value=9.6 Score=37.95 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=23.8
Q ss_pred CCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
|.-...||+|.||.|-+|.= -+|+.||||-
T Consensus 99 y~l~~eiG~G~yGkVkLar~~~~~~l~AiKi 129 (576)
T KOG0585|consen 99 YELIKEIGSGQYGKVKLARDEVDGKLYAIKI 129 (576)
T ss_pred eehhhhhcCCccceEEEEeecCCCcEEEEEe
Confidence 33345799999999999954 5688999994
No 180
>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=56.63 E-value=4.3 Score=41.09 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=24.6
Q ss_pred cceeccCccceEEEEEecCCcEEEEecC
Q 013460 415 EFLIGEGSLGRVYRAEFANGKVIYCVRN 442 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~G~~VAVKr~ 442 (442)
...||+||...|||..-.|.+.+|.||+
T Consensus 366 lk~iG~GGSSkV~kV~~s~~~iyalkkv 393 (677)
T KOG0596|consen 366 LKQIGSGGSSKVFKVLNSDKQIYALKKV 393 (677)
T ss_pred HHhhcCCCcceeeeeecCCCcchhhhHH
Confidence 3479999999999999988889999874
No 181
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=55.41 E-value=4.8 Score=27.97 Aligned_cols=26 Identities=23% Similarity=0.499 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHH-HHHHHhh
Q 013460 303 GAIVGIVLGAVFLVALALL-ALYFCIR 328 (442)
Q Consensus 303 ~~ii~iv~~~~~~~~~~~~-~~~~~~r 328 (442)
.+++++++++++.++++++ +++...|
T Consensus 9 ~vlaavIaG~Vvgll~ailLIlf~iyR 35 (64)
T PF01034_consen 9 EVLAAVIAGGVVGLLFAILLILFLIYR 35 (64)
T ss_dssp ---------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777776655444443 3333333
No 182
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=55.06 E-value=7.4 Score=38.50 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=18.4
Q ss_pred CCCCCCcchhhHHHHHHHHHHH-HHHHHHHH
Q 013460 296 SDKELPAGAIVGIVLGAVFLVA-LALLALYF 325 (442)
Q Consensus 296 ~~~~~~~~~ii~iv~~~~~~~~-~~~~~~~~ 325 (442)
.++.++.++|+||.+++++++. ++.|+.|+
T Consensus 360 n~s~LstgaIaGIsvavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 360 NKSGLSTGAIAGISVAVVVVVGGLVGFLCWW 390 (397)
T ss_pred ccccccccceeeeeehhHHHHHHHHHHHhhh
Confidence 4456888899998777655443 33333333
No 183
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=55.01 E-value=7.1 Score=40.22 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=22.5
Q ss_pred cceeccCccceEEEEEecCC-cEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFANG-KVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~G-~~VAVKr 441 (442)
.+.||-|-||.||.|++..- -.||||-
T Consensus 272 khKLGGGQYGeVYeGvWKkyslTvAVKt 299 (1157)
T KOG4278|consen 272 KHKLGGGQYGEVYEGVWKKYSLTVAVKT 299 (1157)
T ss_pred eeccCCCcccceeeeeeeccceeeehhh
Confidence 57899999999999999543 4799983
No 184
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=54.85 E-value=10 Score=28.84 Aligned_cols=20 Identities=50% Similarity=1.026 Sum_probs=16.2
Q ss_pred ccC-ccceEEEEEecCCcEEEEe
Q 013460 419 GEG-SLGRVYRAEFANGKVIYCV 440 (442)
Q Consensus 419 G~G-gfG~VYkg~L~~G~~VAVK 440 (442)
|+| .-|+||| ++||+.|-|.
T Consensus 71 G~G~~~G~aYr--l~~Gk~I~Vp 91 (92)
T PF09919_consen 71 GSGERLGTAYR--LKDGKLIYVP 91 (92)
T ss_pred CCCeECeEEEE--cCCceEEEec
Confidence 455 5799999 9999998773
No 185
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=54.65 E-value=4.3 Score=32.36 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Q 013460 308 IVLGAVFLVALALLALYFCIRKNRR 332 (442)
Q Consensus 308 iv~~~~~~~~~~~~~~~~~~r~~~~ 332 (442)
.+.+++++++++..++++++.|||+
T Consensus 84 sal~v~lVl~llsg~lv~rrcrrr~ 108 (129)
T PF12191_consen 84 SALSVVLVLALLSGFLVWRRCRRRE 108 (129)
T ss_dssp -------------------------
T ss_pred hHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3444444433433444444443333
No 186
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=52.44 E-value=11 Score=34.94 Aligned_cols=18 Identities=39% Similarity=0.377 Sum_probs=9.1
Q ss_pred CcchhhHHHHHHHHHHHH
Q 013460 301 PAGAIVGIVLGAVFLVAL 318 (442)
Q Consensus 301 ~~~~ii~iv~~~~~~~~~ 318 (442)
.+.+++++++++++++++
T Consensus 212 ~W~iv~g~~~G~~~L~ll 229 (278)
T PF06697_consen 212 WWKIVVGVVGGVVLLGLL 229 (278)
T ss_pred eEEEEEEehHHHHHHHHH
Confidence 344455656665544443
No 187
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=50.64 E-value=16 Score=33.92 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=24.9
Q ss_pred cceeccCccceEEEEEecCCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
.+.||.|-=+.||.|.-+.|..+|||-
T Consensus 96 G~~IGvGKEsdVY~~~~~~g~~~~vKf 122 (304)
T COG0478 96 GTKIGVGKESDVYVAIDPKGRKVAVKF 122 (304)
T ss_pred ccccccCccceEEEEECCCCCEEEEEE
Confidence 368999999999999999999999993
No 188
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=48.76 E-value=30 Score=30.45 Aligned_cols=28 Identities=25% Similarity=0.511 Sum_probs=11.4
Q ss_pred hhhHHHHHH-HHHHHHHHHHHHHHhhccc
Q 013460 304 AIVGIVLGA-VFLVALALLALYFCIRKNR 331 (442)
Q Consensus 304 ~ii~iv~~~-~~~~~~~~~~~~~~~r~~~ 331 (442)
++|+++..+ ++++++++...|+++.||.
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs 129 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQRRS 129 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhhcc
Confidence 444444433 3333333334344443333
No 189
>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]
Probab=47.65 E-value=9.1 Score=37.31 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.1
Q ss_pred eeccCccceEEEEEe-cCCcEEEEec
Q 013460 417 LIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 417 ~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
.||+|.||.|-+|.= ..|++||||-
T Consensus 60 tLGkGTYGKVk~A~e~~sgR~VAiKs 85 (668)
T KOG0611|consen 60 TLGKGTYGKVKLAYEHKSGREVAIKS 85 (668)
T ss_pred HhcCCcccceeehhhccCCcEeehhh
Confidence 599999999999965 6799999984
No 190
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=46.74 E-value=9.1 Score=40.67 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=21.4
Q ss_pred HHHHhhcCCCCccceeccCccceEEEEEecC
Q 013460 403 ASLQTATNSFSQEFLIGEGSLGRVYRAEFAN 433 (442)
Q Consensus 403 ~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~ 433 (442)
+|.+.+-+ ....+.||+|+||.||-|.=.+
T Consensus 988 deWe~~r~-it~~relg~gsfg~Vy~g~~nn 1017 (1025)
T KOG4258|consen 988 DEWEVSRE-ITLGRELGQGSFGMVYEGNANN 1017 (1025)
T ss_pred hHHHHHHH-HhhhhhhccCccceEEEecCCc
Confidence 44444433 4457889999999999997644
No 191
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=46.61 E-value=6.5 Score=36.74 Aligned_cols=6 Identities=50% Similarity=0.728 Sum_probs=0.0
Q ss_pred hccccc
Q 013460 328 RKNRRK 333 (442)
Q Consensus 328 r~~~~~ 333 (442)
|||+.|
T Consensus 172 rkR~GK 177 (290)
T PF05454_consen 172 RKRKGK 177 (290)
T ss_dssp ------
T ss_pred hhhccc
Confidence 334444
No 192
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=46.53 E-value=41 Score=28.77 Aligned_cols=21 Identities=38% Similarity=0.427 Sum_probs=11.9
Q ss_pred CCCCcchhhHHHHHHHHHHHH
Q 013460 298 KELPAGAIVGIVLGAVFLVAL 318 (442)
Q Consensus 298 ~~~~~~~ii~iv~~~~~~~~~ 318 (442)
......+|.+||.++++.++-
T Consensus 110 ~~~~~g~IaGIvsav~valvG 130 (169)
T PF12301_consen 110 GEAEAGTIAGIVSAVVVALVG 130 (169)
T ss_pred cCcccchhhhHHHHHHHHHHH
Confidence 334566777877655443333
No 193
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=45.90 E-value=15 Score=31.77 Aligned_cols=14 Identities=36% Similarity=0.842 Sum_probs=6.8
Q ss_pred cchhhHHHHHHHHH
Q 013460 302 AGAIVGIVLGAVFL 315 (442)
Q Consensus 302 ~~~ii~iv~~~~~~ 315 (442)
..++++|+++++++
T Consensus 78 ~~iivgvi~~Vi~I 91 (179)
T PF13908_consen 78 TGIIVGVICGVIAI 91 (179)
T ss_pred eeeeeehhhHHHHH
Confidence 34555555544443
No 194
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=45.48 E-value=50 Score=24.58 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=3.6
Q ss_pred HHHHHHHhh
Q 013460 320 LLALYFCIR 328 (442)
Q Consensus 320 ~~~~~~~~r 328 (442)
+.++.+|++
T Consensus 49 ilwfvCC~k 57 (94)
T PF05393_consen 49 ILWFVCCKK 57 (94)
T ss_pred HHHHHHHHH
Confidence 333344444
No 195
>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]
Probab=45.01 E-value=5.5 Score=39.97 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=27.7
Q ss_pred hcCCCCccceeccCccceEEEEEecCCc-EEEEecC
Q 013460 408 ATNSFSQEFLIGEGSLGRVYRAEFANGK-VIYCVRN 442 (442)
Q Consensus 408 AT~~F~~~~~IG~GgfG~VYkg~L~~G~-~VAVKr~ 442 (442)
-.++|....++|.||||+|+.+....+. .-||||+
T Consensus 47 ~a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkri 82 (516)
T KOG1033|consen 47 EANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRI 82 (516)
T ss_pred hhccccccccccccCccccCCccccccchhhHHHHh
Confidence 3468889999999999999999775544 6677763
No 196
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=43.37 E-value=32 Score=24.28 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=7.2
Q ss_pred chhhHHHHHHHHH
Q 013460 303 GAIVGIVLGAVFL 315 (442)
Q Consensus 303 ~~ii~iv~~~~~~ 315 (442)
+..||++.++++.
T Consensus 33 W~aIGvi~gi~~~ 45 (68)
T PF04971_consen 33 WAAIGVIGGIFFG 45 (68)
T ss_pred chhHHHHHHHHHH
Confidence 4556666655443
No 197
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=42.24 E-value=12 Score=35.37 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=29.4
Q ss_pred eHHHHHhhcCCCCccceeccCccceEEEE-EecCCcEEEEec
Q 013460 401 TVASLQTATNSFSQEFLIGEGSLGRVYRA-EFANGKVIYCVR 441 (442)
Q Consensus 401 ~~~eL~~AT~~F~~~~~IG~GgfG~VYkg-~L~~G~~VAVKr 441 (442)
+++|+-+-| +.+||+|.||.|--. .+..|...|||.
T Consensus 74 ~F~d~YkLt-----~e~LGeGAyasVqtcv~i~t~~EYAVKi 110 (463)
T KOG0607|consen 74 KFEDMYKLT-----SELLGEGAYASVQTCVSIQTGKEYAVKI 110 (463)
T ss_pred hHHHHHHhH-----HHHhcCccceeeeeeeeeccchhhhhhh
Confidence 477888888 578999999999866 457788899985
No 198
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=40.24 E-value=12 Score=41.98 Aligned_cols=35 Identities=26% Similarity=0.525 Sum_probs=28.7
Q ss_pred hhcCCCCccceeccCccceEEEEE-ecCCcEEEEec
Q 013460 407 TATNSFSQEFLIGEGSLGRVYRAE-FANGKVIYCVR 441 (442)
Q Consensus 407 ~AT~~F~~~~~IG~GgfG~VYkg~-L~~G~~VAVKr 441 (442)
..|-++.+.+.||.|-||.||-|+ ++.|...|||-
T Consensus 1232 nV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKE 1267 (1509)
T KOG4645|consen 1232 NVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKE 1267 (1509)
T ss_pred cceeeeccccccCCcceeeeEEeecCCccchhhhhh
Confidence 356667888999999999999885 56688889984
No 199
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=39.56 E-value=6.5 Score=40.59 Aligned_cols=21 Identities=33% Similarity=0.743 Sum_probs=17.0
Q ss_pred eeccCccceEEEEEecCCcEE
Q 013460 417 LIGEGSLGRVYRAEFANGKVI 437 (442)
Q Consensus 417 ~IG~GgfG~VYkg~L~~G~~V 437 (442)
.||-|.||.||||+-.+-.+.
T Consensus 39 ELGDGAFGKVyKA~nket~~l 59 (1187)
T KOG0579|consen 39 ELGDGAFGKVYKAVNKETKLL 59 (1187)
T ss_pred hhcCccchhhhhhhcccchhh
Confidence 378899999999988765544
No 200
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=39.50 E-value=91 Score=23.72 Aligned_cols=31 Identities=29% Similarity=0.481 Sum_probs=15.2
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHhh
Q 013460 298 KELPAGAIVGIVLGAVFLVALALLALYFCIR 328 (442)
Q Consensus 298 ~~~~~~~ii~iv~~~~~~~~~~~~~~~~~~r 328 (442)
..+..+.|+.|.++.+++++-++..+++|.|
T Consensus 13 GsL~PWeIfLItLasVvvavGl~aGLfFcvR 43 (106)
T PF14654_consen 13 GSLKPWEIFLITLASVVVAVGLFAGLFFCVR 43 (106)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666665544443333333344443
No 201
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=38.76 E-value=26 Score=33.26 Aligned_cols=6 Identities=50% Similarity=0.794 Sum_probs=2.2
Q ss_pred hHHHHH
Q 013460 306 VGIVLG 311 (442)
Q Consensus 306 i~iv~~ 311 (442)
+-|++|
T Consensus 273 vPIaVG 278 (306)
T PF01299_consen 273 VPIAVG 278 (306)
T ss_pred HHHHHH
Confidence 333333
No 202
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=37.53 E-value=54 Score=21.43 Aligned_cols=7 Identities=0% Similarity=0.045 Sum_probs=2.8
Q ss_pred HHHHHhh
Q 013460 322 ALYFCIR 328 (442)
Q Consensus 322 ~~~~~~r 328 (442)
+++.+++
T Consensus 26 ~~w~~~~ 32 (49)
T PF05545_consen 26 VIWAYRP 32 (49)
T ss_pred HHHHHcc
Confidence 3344443
No 203
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=37.21 E-value=28 Score=32.70 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=20.8
Q ss_pred cceeccCccceEEEEEecC-CcEEEEe
Q 013460 415 EFLIGEGSLGRVYRAEFAN-GKVIYCV 440 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~-G~~VAVK 440 (442)
-..||.|+||.|-..+... |...|.|
T Consensus 49 ~~tlGtGSFGrV~LVr~k~~g~yYAmK 75 (355)
T KOG0616|consen 49 LKTLGTGSFGRVHLVREKHSGNYYAMK 75 (355)
T ss_pred eeeeccCccceEEEEEEccCCceeehh
Confidence 5679999999999988744 5567776
No 204
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=37.19 E-value=26 Score=34.93 Aligned_cols=106 Identities=25% Similarity=0.243 Sum_probs=48.0
Q ss_pred CCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccc---cCCCCCCEEEcccCcCCCchhhhhcCC---CCCcE
Q 013460 108 SLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSI---ASMVSLSYLNVSRNSLTQSIGDIFGNL---AGLAT 181 (442)
Q Consensus 108 ~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~ 181 (442)
.+++++++.|.+....|..+....--|.++.+.++...-..+ ..-..|.+++|+.|.....+|..+..+ ..++.
T Consensus 166 r~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ 245 (553)
T KOG4242|consen 166 RARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFK 245 (553)
T ss_pred hhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhhc
Confidence 456666666666666555554211224455554442211111 011245666666666665555443221 23444
Q ss_pred EeCCCCCCCCC---CchhccCCCCCCEEEcccCcC
Q 013460 182 LDLSFNNFSGD---LPNSFISLSNISSLYLQNNQV 213 (442)
Q Consensus 182 L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l 213 (442)
++.+.-.++-. -+-..+.-++|.+.+++.|..
T Consensus 246 ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 246 LDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred ccccccccchhhcccccccccccccchhhhccCCC
Confidence 44444333211 111223334555666665554
No 205
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.14 E-value=50 Score=22.91 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=12.5
Q ss_pred CCCCcchhhHHHHHHHHHHHHHH
Q 013460 298 KELPAGAIVGIVLGAVFLVALAL 320 (442)
Q Consensus 298 ~~~~~~~ii~iv~~~~~~~~~~~ 320 (442)
+....++|+.++++.+++++++.
T Consensus 8 KGlnPGlIVLlvV~g~ll~flvG 30 (69)
T PF04689_consen 8 KGLNPGLIVLLVVAGLLLVFLVG 30 (69)
T ss_pred cCCCCCeEEeehHHHHHHHHHHH
Confidence 45556666666665544444433
No 206
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=34.89 E-value=13 Score=31.23 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=0.0
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHH
Q 013460 296 SDKELPAGAIVGIVLGAVFLVALALLA 322 (442)
Q Consensus 296 ~~~~~~~~~ii~iv~~~~~~~~~~~~~ 322 (442)
.+..+....++||++++++.+.++..+
T Consensus 122 ek~GL~T~tLVGIIVGVLlaIG~igGI 148 (162)
T PF05808_consen 122 EKDGLSTVTLVGIIVGVLLAIGFIGGI 148 (162)
T ss_dssp ---------------------------
T ss_pred ccCCcceeeeeeehhhHHHHHHHHhhe
Confidence 345566677888887776554444433
No 207
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=34.77 E-value=51 Score=30.52 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc
Q 013460 307 GIVLGAVFLVALALLALYFCIRKNRRK 333 (442)
Q Consensus 307 ~iv~~~~~~~~~~~~~~~~~~r~~~~~ 333 (442)
++|+.+++++++++-++.++||++..+
T Consensus 265 alvllil~vvliiLYiWlyrrRK~swk 291 (295)
T TIGR01478 265 ALVLIILTVVLIILYIWLYRRRKKSWK 291 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 334444445555566666676655443
No 208
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=34.52 E-value=36 Score=33.40 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.6
Q ss_pred ceeccCccceEEEEEecCC-cEEEEec
Q 013460 416 FLIGEGSLGRVYRAEFANG-KVIYCVR 441 (442)
Q Consensus 416 ~~IG~GgfG~VYkg~L~~G-~~VAVKr 441 (442)
+.||.|.-|+||.+.+.+- ...|+|.
T Consensus 83 k~LG~GdiG~VyL~~l~~t~~~fAmKV 109 (459)
T KOG0610|consen 83 KRLGCGDIGTVYLVELRGTNCLFAMKV 109 (459)
T ss_pred HHcCCCCceeEEEEEecCCCceEEEEE
Confidence 4799999999999999765 6789985
No 209
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=33.20 E-value=13 Score=41.05 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=26.8
Q ss_pred HHHhhcCCCCccceeccCccceEEEEEecC-CcEEEEec
Q 013460 404 SLQTATNSFSQEFLIGEGSLGRVYRAEFAN-GKVIYCVR 441 (442)
Q Consensus 404 eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~-G~~VAVKr 441 (442)
++.--.++|.--.+||+|+||.|...++.. +++.|-|+
T Consensus 69 ~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~ 107 (1317)
T KOG0612|consen 69 ELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKI 107 (1317)
T ss_pred HHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHH
Confidence 333344555556799999999999998854 45667664
No 210
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=33.05 E-value=31 Score=42.11 Aligned_cols=32 Identities=34% Similarity=0.488 Sum_probs=27.9
Q ss_pred EcccCcCCCchhhhhcCCCCCcEEeCCCCCCC
Q 013460 159 NVSRNSLTQSIGDIFGNLAGLATLDLSFNNFS 190 (442)
Q Consensus 159 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 190 (442)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 58899999888888889999999999999775
No 211
>PTZ00370 STEVOR; Provisional
Probab=32.62 E-value=53 Score=30.50 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhccccc
Q 013460 314 FLVALALLALYFCIRKNRRK 333 (442)
Q Consensus 314 ~~~~~~~~~~~~~~r~~~~~ 333 (442)
+++++++-++.++||++..+
T Consensus 268 ~vvliilYiwlyrrRK~swk 287 (296)
T PTZ00370 268 AVVLIILYIWLYRRRKNSWK 287 (296)
T ss_pred HHHHHHHHHHHHHhhcchhH
Confidence 33444444556655544433
No 212
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=31.85 E-value=14 Score=36.13 Aligned_cols=131 Identities=17% Similarity=0.145 Sum_probs=78.7
Q ss_pred CCCCCEEEccCC-CCCCCCCCCcc---CCCcEEEccCCcC-CCCccccc-cCCCCCCEEEcccCcC-CCchhhh-hcCCC
Q 013460 106 LLSLRKFDLSGN-SIHDTIPYQLP---PNLTSLNLASNNF-SGNLPYSI-ASMVSLSYLNVSRNSL-TQSIGDI-FGNLA 177 (442)
Q Consensus 106 l~~L~~L~l~~n-~l~~~~p~~~~---~~L~~L~Ls~n~l-~~~~p~~~-~~l~~L~~L~L~~n~l-~~~~p~~-~~~l~ 177 (442)
+..+..+++..+ .+++..-..+. ..|+.|+.+++.- +...-..+ .+..+|+.|-++.++- +..--.. -.+.+
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 344666676555 34433222222 7889999988654 32222223 3578999999998873 2211111 23568
Q ss_pred CCcEEeCCCCCCCC--CCchhccCCCCCCEEEcccCcCCccC--ccC----CCCC-ccEEEeecccCc
Q 013460 178 GLATLDLSFNNFSG--DLPNSFISLSNISSLYLQNNQVTGSL--NVF----SGLP-LTTLNVANNHFS 236 (442)
Q Consensus 178 ~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~--~~~----~~l~-L~~L~ls~N~l~ 236 (442)
.|+.+++..+.... .+-..-.+++.|+.|.|+++.+.... ..+ ..+. |..+.|+++...
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 89999998876542 12222347889999999988763211 112 2233 888889888764
No 213
>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]
Probab=31.80 E-value=44 Score=34.43 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=23.4
Q ss_pred CCccceeccCccceEEEEEecCCc-EEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEFANGK-VIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L~~G~-~VAVKr 441 (442)
|.--..+|+|.||.|..++..... .|+||-
T Consensus 563 yttlq~lG~GAyGkV~lai~K~n~~eVViK~ 593 (772)
T KOG1152|consen 563 YTTLQPLGEGAYGKVNLAIHKENNYEVVIKM 593 (772)
T ss_pred ceeeeeccccccceEEEeeecccceEEEeee
Confidence 444567999999999999996654 577774
No 214
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.65 E-value=24 Score=34.65 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=25.6
Q ss_pred HHHhhcCCCCccceeccCccceEEEEEecCCc-EEEEe
Q 013460 404 SLQTATNSFSQEFLIGEGSLGRVYRAEFANGK-VIYCV 440 (442)
Q Consensus 404 eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~G~-~VAVK 440 (442)
+..+|| +|+--.+||+|+||.|..|.-++-. ..|||
T Consensus 344 d~i~~t-DFnFl~VlGKGSFGKVlLaerkgtdELyAiK 380 (683)
T KOG0696|consen 344 DRIKAT-DFNFLMVLGKGSFGKVLLAERKGTDELYAIK 380 (683)
T ss_pred cceeec-ccceEEEeccCccceeeeecccCcchhhhhh
Confidence 334444 4555779999999999999875543 46776
No 215
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=31.22 E-value=57 Score=32.70 Aligned_cols=35 Identities=11% Similarity=-0.116 Sum_probs=22.3
Q ss_pred CCCCCCCCCccEEe--------cCCcEEEEEeCCCCCCcccch
Q 013460 67 EGDPCGESWKGVAC--------EGSAVVSIDISGLGLSGTMGY 101 (442)
Q Consensus 67 ~~~~c~~~w~gv~c--------~~~~l~~L~L~~n~l~~~~~~ 101 (442)
+.++|.-.|.-..- .+.++++++++.|.+....|.
T Consensus 141 ~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpi 183 (553)
T KOG4242|consen 141 GLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPI 183 (553)
T ss_pred CchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCc
Confidence 45778655643321 235788999999988765543
No 216
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=29.75 E-value=61 Score=30.37 Aligned_cols=10 Identities=40% Similarity=0.487 Sum_probs=4.5
Q ss_pred CCCCcchhhH
Q 013460 298 KELPAGAIVG 307 (442)
Q Consensus 298 ~~~~~~~ii~ 307 (442)
+++..+.++.
T Consensus 222 ~~l~~G~VVl 231 (281)
T PF12768_consen 222 KKLSRGFVVL 231 (281)
T ss_pred ccccceEEEE
Confidence 4444444443
No 217
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=29.48 E-value=22 Score=27.30 Aligned_cols=17 Identities=24% Similarity=-0.009 Sum_probs=8.0
Q ss_pred CCCCcchhhHHHHHHHH
Q 013460 298 KELPAGAIVGIVLGAVF 314 (442)
Q Consensus 298 ~~~~~~~ii~iv~~~~~ 314 (442)
.....++.+++++.+.+
T Consensus 65 ~gaiagi~vg~~~~v~~ 81 (96)
T PTZ00382 65 TGAIAGISVAVVAVVGG 81 (96)
T ss_pred cccEEEEEeehhhHHHH
Confidence 34445555555444433
No 218
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=29.38 E-value=76 Score=23.42 Aligned_cols=18 Identities=11% Similarity=0.423 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 013460 304 AIVGIVLGAVFLVALALL 321 (442)
Q Consensus 304 ~ii~iv~~~~~~~~~~~~ 321 (442)
.++++++++++.+++..+
T Consensus 8 ~iialiv~~iiaIvvW~i 25 (81)
T PF00558_consen 8 AIIALIVALIIAIVVWTI 25 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555444443344333
No 219
>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]
Probab=29.29 E-value=49 Score=34.08 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=25.2
Q ss_pred CCCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
+++.-...||+|.|+.|..|.- ..|..||+|-
T Consensus 56 g~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~ 88 (596)
T KOG0586|consen 56 GLYVIIKTIGKGNFAKVKLARHILTGTEVAIKI 88 (596)
T ss_pred cceeeeeeeccceeEEEEeeEecCCCceEEEEE
Confidence 3444456799999999999976 4578999994
No 220
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.02 E-value=37 Score=41.54 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=28.4
Q ss_pred EccCCcCCCCccccccCCCCCCEEEcccCcCC
Q 013460 135 NLASNNFSGNLPYSIASMVSLSYLNVSRNSLT 166 (442)
Q Consensus 135 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 166 (442)
||++|+|+..-+..|..+.+|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999777778889999999999999875
No 221
>PHA03265 envelope glycoprotein D; Provisional
Probab=27.63 E-value=60 Score=30.99 Aligned_cols=9 Identities=11% Similarity=0.180 Sum_probs=4.3
Q ss_pred hhhHHHHHH
Q 013460 15 TSRLIDAFV 23 (442)
Q Consensus 15 ~~~~~~~~~ 23 (442)
|+.||..-+
T Consensus 4 ~~~~~~~~~ 12 (402)
T PHA03265 4 FKLMMDGRL 12 (402)
T ss_pred cchhcccee
Confidence 455555433
No 222
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=26.95 E-value=1.1e+02 Score=25.29 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 013460 304 AIVGIVLGAVFLVALALLAL 323 (442)
Q Consensus 304 ~ii~iv~~~~~~~~~~~~~~ 323 (442)
+++++.+.+++.++++++++
T Consensus 121 lilaisvtvv~~iliii~CL 140 (154)
T PF14914_consen 121 LILAISVTVVVMILIIIFCL 140 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 55555544443333433333
No 223
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=26.46 E-value=1.1e+02 Score=19.33 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=3.1
Q ss_pred CCCEEEc
Q 013460 108 SLRKFDL 114 (442)
Q Consensus 108 ~L~~L~l 114 (442)
+|+.|.+
T Consensus 13 ~l~~L~~ 19 (44)
T PF05725_consen 13 SLKSLIF 19 (44)
T ss_pred CCeEEEE
Confidence 3444444
No 224
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=25.22 E-value=24 Score=34.03 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 013460 304 AIVGIVLGAVFLVALALL 321 (442)
Q Consensus 304 ~ii~iv~~~~~~~~~~~~ 321 (442)
.|.||+++++++.+++++
T Consensus 11 TITgIcvaLlVVGi~Cvv 28 (404)
T PF02158_consen 11 TITGICVALLVVGIVCVV 28 (404)
T ss_dssp ------------------
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 456666666554444333
No 225
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=24.96 E-value=52 Score=17.98 Aligned_cols=11 Identities=45% Similarity=0.362 Sum_probs=5.6
Q ss_pred CCCcEEeCCCC
Q 013460 177 AGLATLDLSFN 187 (442)
Q Consensus 177 ~~L~~L~Ls~N 187 (442)
++|++|+|+++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 226
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=23.50 E-value=86 Score=25.82 Aligned_cols=12 Identities=67% Similarity=1.043 Sum_probs=6.2
Q ss_pred chhhHHHHHHHH
Q 013460 303 GAIVGIVLGAVF 314 (442)
Q Consensus 303 ~~ii~iv~~~~~ 314 (442)
.+|.||++++++
T Consensus 61 tAIaGIVfgiVf 72 (155)
T PF10873_consen 61 TAIAGIVFGIVF 72 (155)
T ss_pred ceeeeeehhhHH
Confidence 345555555544
No 227
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=23.38 E-value=39 Score=32.08 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=11.6
Q ss_pred CCcchhhHHHHHHHHHHHH
Q 013460 300 LPAGAIVGIVLGAVFLVAL 318 (442)
Q Consensus 300 ~~~~~ii~iv~~~~~~~~~ 318 (442)
...-+++|+++++++++++
T Consensus 271 ~~vPIaVG~~La~lvlivL 289 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIVL 289 (306)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3455778888866554443
No 228
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=23.37 E-value=49 Score=24.51 Aligned_cols=23 Identities=9% Similarity=-0.026 Sum_probs=19.0
Q ss_pred eeccCccceEEEEEecCCcEEEE
Q 013460 417 LIGEGSLGRVYRAEFANGKVIYC 439 (442)
Q Consensus 417 ~IG~GgfG~VYkg~L~~G~~VAV 439 (442)
-.|+=.|+.||.|.++.|..|.+
T Consensus 16 ~~G~la~~RV~sG~l~~g~~v~~ 38 (85)
T cd03690 16 KGERLAYLRLYSGTLRLRDSVRV 38 (85)
T ss_pred CCCeEEEEEEccCEEcCCCEEEe
Confidence 35777899999999999988753
No 229
>PF15069 FAM163: FAM163 family
Probab=23.32 E-value=78 Score=26.07 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 013460 304 AIVGIVLGAVFLVALALLA 322 (442)
Q Consensus 304 ~ii~iv~~~~~~~~~~~~~ 322 (442)
+|.|.+++.++++.++++.
T Consensus 7 VItGgILAtVILLcIIaVL 25 (143)
T PF15069_consen 7 VITGGILATVILLCIIAVL 25 (143)
T ss_pred EEechHHHHHHHHHHHHHH
Confidence 4555555555544444433
No 230
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=23.13 E-value=44 Score=31.83 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=22.6
Q ss_pred CCCCccceeccCccceEEEEEe-cCCcEEEEe
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCV 440 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVK 440 (442)
++|+--.+||+|-||.|....= ..|+..|+|
T Consensus 168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiK 199 (516)
T KOG0690|consen 168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIK 199 (516)
T ss_pred chhhHHHHhcCCccceEEEEeecccCceeehh
Confidence 4466667999999999986643 456677776
No 231
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=23.04 E-value=69 Score=26.34 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=15.1
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHH
Q 013460 300 LPAGAIVGIVLGAVFLVALALLALYF 325 (442)
Q Consensus 300 ~~~~~ii~iv~~~~~~~~~~~~~~~~ 325 (442)
..+++++|||+...+++++++.+.++
T Consensus 62 AIaGIVfgiVfimgvva~i~icvCmc 87 (155)
T PF10873_consen 62 AIAGIVFGIVFIMGVVAGIAICVCMC 87 (155)
T ss_pred eeeeeehhhHHHHHHHHHHHHHHhhh
Confidence 34567888877665555554444333
No 232
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=22.99 E-value=61 Score=24.47 Aligned_cols=7 Identities=14% Similarity=0.372 Sum_probs=2.8
Q ss_pred HHHHHhh
Q 013460 322 ALYFCIR 328 (442)
Q Consensus 322 ~~~~~~r 328 (442)
.+++|+.
T Consensus 60 Lv~CC~~ 66 (98)
T PF07204_consen 60 LVCCCRA 66 (98)
T ss_pred HHHHhhh
Confidence 3344443
No 233
>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.26 E-value=91 Score=31.52 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=22.2
Q ss_pred cceeccCccceEEEEEe-cCCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
.++||=|.|.+||.++= .+.+.||+|.
T Consensus 83 ~rKLGWGHFSTVWLawDtq~~r~VAlKV 110 (590)
T KOG1290|consen 83 QRKLGWGHFSTVWLAWDTQNKRYVALKV 110 (590)
T ss_pred EEeccccccceeEEEeeccCCeEEEEEE
Confidence 57899999999999965 4456899984
No 234
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=20.98 E-value=98 Score=29.01 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=20.4
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhh
Q 013460 295 SSDKELPAGAIVGIVLGAVFLVALALLALYFCIR 328 (442)
Q Consensus 295 ~~~~~~~~~~ii~iv~~~~~~~~~~~~~~~~~~r 328 (442)
+-.+.....+-++++++.+++++++.+++.+.+|
T Consensus 223 ~l~~G~VVlIslAiALG~v~ll~l~Gii~~~~~r 256 (281)
T PF12768_consen 223 KLSRGFVVLISLAIALGTVFLLVLIGIILAYIRR 256 (281)
T ss_pred cccceEEEEEehHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455666778888877766665555444444
No 235
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=20.96 E-value=1e+02 Score=29.18 Aligned_cols=9 Identities=0% Similarity=0.217 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 013460 310 LGAVFLVAL 318 (442)
Q Consensus 310 ~~~~~~~~~ 318 (442)
+++++++++
T Consensus 260 aSiiaIliI 268 (299)
T PF02009_consen 260 ASIIAILII 268 (299)
T ss_pred HHHHHHHHH
Confidence 333333333
No 236
>KOG3482 consensus Small nuclear ribonucleoprotein (snRNP) SMF [RNA processing and modification]
Probab=20.65 E-value=86 Score=22.32 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=11.5
Q ss_pred eeccCccceEEEEEe
Q 013460 417 LIGEGSLGRVYRAEF 431 (442)
Q Consensus 417 ~IG~GgfG~VYkg~L 431 (442)
++=+=.+|.+|||.|
T Consensus 21 V~vkLKwg~eYkG~L 35 (79)
T KOG3482|consen 21 VLVKLKWGQEYKGTL 35 (79)
T ss_pred EEEEEecCcEEEEEE
Confidence 444556899999998
No 237
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=20.55 E-value=34 Score=35.33 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=14.5
Q ss_pred cceeccCccceEEEEEe
Q 013460 415 EFLIGEGSLGRVYRAEF 431 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L 431 (442)
+.+||+|.|=+||||.=
T Consensus 45 ~evLGrGafKtVYka~D 61 (632)
T KOG0584|consen 45 DEVLGRGAFKTVYKAFD 61 (632)
T ss_pred hhhcccccceeeeeccc
Confidence 34899999999999954
No 238
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=20.49 E-value=54 Score=25.08 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=9.6
Q ss_pred eeccCccceEEE
Q 013460 417 LIGEGSLGRVYR 428 (442)
Q Consensus 417 ~IG~GgfG~VYk 428 (442)
--=+||||+.||
T Consensus 82 ~yPrgg~GV~yr 93 (95)
T PRK15449 82 EYPRGTFGVEFR 93 (95)
T ss_pred cCCCCCcCEEEe
Confidence 345799999997
No 239
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=20.27 E-value=1.1e+02 Score=20.28 Aligned_cols=10 Identities=30% Similarity=0.720 Sum_probs=4.3
Q ss_pred hhHHHHHHHH
Q 013460 305 IVGIVLGAVF 314 (442)
Q Consensus 305 ii~iv~~~~~ 314 (442)
+.|.++++++
T Consensus 16 igGLi~A~vl 25 (50)
T PF02038_consen 16 IGGLIFAGVL 25 (50)
T ss_dssp HHHHHHHHHH
T ss_pred ccchHHHHHH
Confidence 3444444443
No 240
>PF06089 Asparaginase_II: L-asparaginase II; InterPro: IPR010349 This family consists of several bacterial L-asparaginase II proteins. L-asparaginase (3.5.1.1 from EC) catalyses the hydrolysis of L-asparagine to L-aspartate and ammonium. Rhizobium etli possesses two asparaginases: asparaginase I, which is thermostable and constitutive, and asparaginase II, which is thermolabile, induced by asparagine and repressed by the carbon source [].
Probab=20.21 E-value=1.4e+02 Score=28.48 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=30.2
Q ss_pred HHHHhhcCCCCccceeccCccceEEEEEecC-CcEEEEec
Q 013460 403 ASLQTATNSFSQEFLIGEGSLGRVYRAEFAN-GKVIYCVR 441 (442)
Q Consensus 403 ~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~-G~~VAVKr 441 (442)
.+|+.+++ .++|+|+|.=-||-+-+++ |.=||||-
T Consensus 238 T~Lm~~~~----G~~vaK~GAEGV~~~~l~~~g~gvAlKi 273 (324)
T PF06089_consen 238 TELMRAFP----GRLVAKGGAEGVYCAALPDEGLGVALKI 273 (324)
T ss_pred HHHHHhCC----CcEEEEeCcceEEEEEecCCceEEEEEE
Confidence 57888875 4689999999999999999 88899994
No 241
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=20.03 E-value=1.8e+02 Score=25.81 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=13.5
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHH
Q 013460 297 DKELPAGAIVGIVLGAVFLVALALLA 322 (442)
Q Consensus 297 ~~~~~~~~ii~iv~~~~~~~~~~~~~ 322 (442)
...+..+++.|++.+++++ ++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI-~i~v~v 60 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVI-FIVVLV 60 (221)
T ss_pred ceeeeeeeecchhhhHHHH-HHHHHH
Confidence 4455566666766555444 444444
Done!