Query 013460
Match_columns 442
No_of_seqs 529 out of 3638
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 10:59:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.6E-31 5.3E-36 255.0 15.1 219 38-257 2-234 (313)
2 3rgz_A Protein brassinosteroid 99.9 4.3E-27 1.5E-31 250.8 15.6 218 35-257 5-260 (768)
3 4ecn_A Leucine-rich repeat pro 99.9 2E-27 6.9E-32 253.3 12.1 216 37-257 264-608 (876)
4 4eco_A Uncharacterized protein 99.9 1.7E-27 6E-32 248.4 10.2 214 39-257 27-366 (636)
5 4fcg_A Uncharacterized protein 99.9 1.2E-26 3.9E-31 222.7 9.3 213 39-257 24-266 (328)
6 3rgz_A Protein brassinosteroid 99.9 7.3E-24 2.5E-28 225.9 15.0 88 83-170 466-555 (768)
7 2o6q_A Variable lymphocyte rec 99.9 3.3E-23 1.1E-27 193.0 17.4 187 74-260 17-221 (270)
8 1ogq_A PGIP-2, polygalacturona 99.9 9E-24 3.1E-28 201.2 10.6 175 82-257 100-281 (313)
9 3m19_A Variable lymphocyte rec 99.9 1.6E-22 5.6E-27 186.2 15.6 182 74-259 6-194 (251)
10 2o6s_A Variable lymphocyte rec 99.9 2.3E-22 7.8E-27 179.8 12.4 173 69-247 3-189 (208)
11 1ozn_A Reticulon 4 receptor; N 99.9 7.7E-22 2.6E-26 185.2 15.9 176 83-258 32-215 (285)
12 1p9a_G Platelet glycoprotein I 99.9 1.8E-21 6E-26 183.2 17.1 176 83-260 31-211 (290)
13 1ozn_A Reticulon 4 receptor; N 99.9 2E-21 6.9E-26 182.3 17.4 177 83-259 56-240 (285)
14 3zyi_A Leucine-rich repeat-con 99.9 1.3E-21 4.5E-26 195.8 17.1 182 74-257 55-279 (452)
15 3m19_A Variable lymphocyte rec 99.9 3.6E-21 1.2E-25 177.2 16.5 157 83-239 35-195 (251)
16 4fcg_A Uncharacterized protein 99.9 1.7E-21 5.7E-26 186.7 13.1 172 82-257 103-290 (328)
17 2z62_A TOLL-like receptor 4, v 99.9 2.6E-21 8.8E-26 180.7 13.4 176 83-258 28-214 (276)
18 3zyj_A Leucine-rich repeat-con 99.9 5.3E-21 1.8E-25 190.8 15.7 182 74-257 44-268 (440)
19 2z66_A Variable lymphocyte rec 99.9 1.4E-21 4.7E-26 185.4 10.6 189 69-258 3-213 (306)
20 3rfs_A Internalin B, repeat mo 99.9 1.7E-20 6E-25 174.8 17.8 172 83-258 41-219 (272)
21 2z62_A TOLL-like receptor 4, v 99.9 5.4E-21 1.8E-25 178.6 14.3 179 82-260 51-240 (276)
22 2z66_A Variable lymphocyte rec 99.8 4E-21 1.4E-25 182.2 11.3 175 83-258 78-262 (306)
23 3rfs_A Internalin B, repeat mo 99.8 2.4E-20 8.2E-25 173.8 15.6 170 82-257 62-235 (272)
24 1wwl_A Monocyte differentiatio 99.8 8.2E-21 2.8E-25 180.6 11.7 176 82-259 94-289 (312)
25 2z80_A TOLL-like receptor 2, v 99.8 8.4E-21 2.9E-25 183.7 11.0 177 83-259 52-237 (353)
26 3v47_A TOLL-like receptor 5B a 99.8 4.1E-20 1.4E-24 185.0 16.3 105 154-258 276-385 (455)
27 3j0a_A TOLL-like receptor 5; m 99.8 3.9E-20 1.3E-24 199.1 16.9 89 173-261 476-564 (844)
28 2id5_A Lingo-1, leucine rich r 99.8 2.9E-20 9.8E-25 187.4 14.1 167 74-240 12-193 (477)
29 3v47_A TOLL-like receptor 5B a 99.8 5.9E-20 2E-24 183.9 14.5 156 83-238 30-195 (455)
30 1wwl_A Monocyte differentiatio 99.8 3.7E-20 1.2E-24 176.1 12.0 174 82-258 120-310 (312)
31 2xwt_C Thyrotropin receptor; s 99.8 3.4E-20 1.2E-24 169.4 11.3 174 83-258 31-219 (239)
32 1xku_A Decorin; proteoglycan, 99.8 2.9E-19 1E-23 171.2 17.7 186 69-258 27-230 (330)
33 2z81_A CD282 antigen, TOLL-lik 99.8 5.7E-20 2E-24 188.4 12.5 175 84-259 27-211 (549)
34 3oja_B Anopheles plasmodium-re 99.8 9E-20 3.1E-24 188.9 13.9 132 84-215 52-185 (597)
35 4eco_A Uncharacterized protein 99.8 4.3E-20 1.5E-24 192.5 10.7 160 96-258 196-391 (636)
36 3vq2_A TLR4, TOLL-like recepto 99.8 9.3E-20 3.2E-24 189.1 13.1 175 83-257 32-217 (606)
37 4glp_A Monocyte differentiatio 99.8 6E-20 2E-24 174.5 10.5 175 83-259 91-287 (310)
38 2o6q_A Variable lymphocyte rec 99.8 6.2E-19 2.1E-23 164.0 16.8 158 82-239 60-221 (270)
39 3e6j_A Variable lymphocyte rec 99.8 3.2E-19 1.1E-23 161.8 14.3 157 68-240 16-176 (229)
40 2v70_A SLIT-2, SLIT homolog 2 99.8 6.8E-19 2.3E-23 158.6 16.3 151 87-240 15-170 (220)
41 2v70_A SLIT-2, SLIT homolog 2 99.8 6.9E-20 2.4E-24 165.1 9.8 149 69-217 7-169 (220)
42 3t6q_A CD180 antigen; protein- 99.8 1.5E-19 5E-24 187.6 13.7 175 83-258 376-561 (606)
43 2v9t_B SLIT homolog 2 protein 99.8 2.2E-19 7.6E-24 161.8 13.1 147 88-237 16-166 (220)
44 3vq2_A TLR4, TOLL-like recepto 99.8 7.5E-20 2.6E-24 189.8 11.4 174 83-257 350-534 (606)
45 1xku_A Decorin; proteoglycan, 99.8 4.6E-19 1.6E-23 169.8 15.7 153 83-238 100-278 (330)
46 2xot_A Amphoterin-induced prot 99.8 3.3E-19 1.1E-23 173.1 14.7 171 87-260 22-205 (361)
47 3o6n_A APL1; leucine-rich repe 99.8 2.7E-19 9.2E-24 175.5 13.7 177 83-259 93-333 (390)
48 4glp_A Monocyte differentiatio 99.8 1.7E-19 5.7E-24 171.4 11.9 174 82-257 116-307 (310)
49 2v9t_B SLIT homolog 2 protein 99.8 5.6E-19 1.9E-23 159.2 14.6 149 110-259 14-167 (220)
50 2ft3_A Biglycan; proteoglycan, 99.8 4.2E-19 1.4E-23 170.3 14.4 183 70-257 30-230 (332)
51 1ziw_A TOLL-like receptor 3; i 99.8 4.4E-19 1.5E-23 186.6 15.7 161 83-243 25-191 (680)
52 2ft3_A Biglycan; proteoglycan, 99.8 6.6E-19 2.3E-23 168.9 15.6 175 82-258 77-278 (332)
53 1h6u_A Internalin H; cell adhe 99.8 6.8E-19 2.3E-23 167.0 15.5 167 82-259 62-232 (308)
54 2id5_A Lingo-1, leucine rich r 99.8 5.4E-19 1.8E-23 178.0 15.6 154 82-235 55-212 (477)
55 3oja_B Anopheles plasmodium-re 99.8 7.1E-19 2.4E-23 182.1 16.7 105 84-188 76-182 (597)
56 3o6n_A APL1; leucine-rich repe 99.8 9.8E-19 3.4E-23 171.5 16.7 176 83-258 69-309 (390)
57 3e6j_A Variable lymphocyte rec 99.8 1.1E-18 3.7E-23 158.3 15.6 150 109-259 21-174 (229)
58 4ecn_A Leucine-rich repeat pro 99.8 2.3E-19 7.7E-24 191.4 12.3 157 99-258 440-633 (876)
59 1ziw_A TOLL-like receptor 3; i 99.8 8.2E-19 2.8E-23 184.5 16.5 178 83-260 405-625 (680)
60 3oja_A Leucine-rich immune mol 99.8 1.6E-19 5.4E-24 182.2 10.6 171 83-258 58-251 (487)
61 1w8a_A SLIT protein; signaling 99.8 4.1E-19 1.4E-23 156.6 11.3 171 86-259 11-185 (192)
62 3j0a_A TOLL-like receptor 5; m 99.8 3E-19 1E-23 192.2 12.2 185 73-257 14-217 (844)
63 4ezg_A Putative uncharacterize 99.8 1.1E-18 3.7E-23 154.5 13.6 150 83-237 44-195 (197)
64 2z7x_B TOLL-like receptor 1, v 99.8 4.1E-19 1.4E-23 180.8 12.2 129 129-258 324-458 (520)
65 2xot_A Amphoterin-induced prot 99.8 3.5E-19 1.2E-23 172.9 11.0 168 70-237 15-203 (361)
66 2xwt_C Thyrotropin receptor; s 99.8 4.8E-19 1.6E-23 161.7 11.2 171 82-255 54-237 (239)
67 3t6q_A CD180 antigen; protein- 99.8 8E-19 2.8E-23 182.1 14.1 161 83-243 33-199 (606)
68 2o6s_A Variable lymphocyte rec 99.8 2.2E-18 7.5E-23 153.8 15.0 170 78-257 5-178 (208)
69 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.7E-19 2.6E-23 180.6 13.6 173 84-257 277-486 (562)
70 3cvr_A Invasion plasmid antige 99.8 1E-18 3.4E-23 178.4 12.7 151 67-236 39-193 (571)
71 1p9a_G Platelet glycoprotein I 99.8 5.2E-18 1.8E-22 159.4 16.2 154 82-238 54-210 (290)
72 3o53_A Protein LRIM1, AGAP0063 99.8 3.2E-19 1.1E-23 170.0 7.8 168 82-258 57-228 (317)
73 2z63_A TOLL-like receptor 4, v 99.8 6.9E-19 2.3E-23 181.1 10.7 177 82-259 346-533 (570)
74 1h6t_A Internalin B; cell adhe 99.8 4.8E-18 1.7E-22 159.8 15.5 168 83-259 46-215 (291)
75 2z80_A TOLL-like receptor 2, v 99.8 4.2E-19 1.4E-23 171.8 8.2 158 82-239 75-238 (353)
76 1h6u_A Internalin H; cell adhe 99.8 1.1E-17 3.8E-22 158.6 16.8 168 83-259 41-210 (308)
77 2z63_A TOLL-like receptor 4, v 99.7 3.4E-18 1.2E-22 175.9 12.3 173 83-255 28-211 (570)
78 4g8a_A TOLL-like receptor 4; l 99.7 6E-18 2.1E-22 176.0 13.5 159 84-242 53-220 (635)
79 4g8a_A TOLL-like receptor 4; l 99.7 6.8E-18 2.3E-22 175.6 13.7 166 89-257 37-214 (635)
80 1w8a_A SLIT protein; signaling 99.7 1E-17 3.5E-22 147.6 12.2 131 109-240 10-143 (192)
81 1o6v_A Internalin A; bacterial 99.7 2.9E-17 1E-21 164.9 15.9 169 83-258 199-389 (466)
82 4fmz_A Internalin; leucine ric 99.7 3.2E-17 1.1E-21 158.0 15.1 168 82-258 154-325 (347)
83 1m9s_A Internalin B; cell inva 99.7 2.2E-17 7.4E-22 170.2 14.6 148 82-240 64-214 (605)
84 4b8c_D Glucose-repressible alc 99.7 1E-18 3.4E-23 184.4 4.3 193 40-243 130-336 (727)
85 2z81_A CD282 antigen, TOLL-lik 99.7 3.5E-17 1.2E-21 167.7 15.5 172 74-257 5-185 (549)
86 4ezg_A Putative uncharacterize 99.7 1.9E-17 6.6E-22 146.4 11.2 150 104-257 41-194 (197)
87 1h6t_A Internalin B; cell adhe 99.7 7.3E-17 2.5E-21 151.7 14.9 148 82-238 67-215 (291)
88 2z7x_B TOLL-like receptor 1, v 99.7 3.2E-17 1.1E-21 166.9 13.1 172 83-259 302-483 (520)
89 3zyj_A Leucine-rich repeat-con 99.7 5.6E-17 1.9E-21 161.6 13.7 177 82-260 111-295 (440)
90 3cvr_A Invasion plasmid antige 99.7 1E-16 3.5E-21 163.5 15.8 155 83-258 80-244 (571)
91 1m9s_A Internalin B; cell inva 99.7 1.3E-16 4.4E-21 164.4 16.4 170 82-260 42-213 (605)
92 3zyi_A Leucine-rich repeat-con 99.7 7.8E-17 2.7E-21 161.1 14.4 177 83-261 123-307 (452)
93 3oja_A Leucine-rich immune mol 99.7 1.4E-17 4.7E-22 168.0 8.6 159 83-247 99-262 (487)
94 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 4.4E-17 1.5E-21 167.5 12.5 173 83-260 331-513 (562)
95 3o53_A Protein LRIM1, AGAP0063 99.7 1.7E-17 5.7E-22 158.1 8.4 169 82-259 79-252 (317)
96 1o6v_A Internalin A; bacterial 99.7 1.9E-16 6.4E-21 159.0 16.1 169 82-259 176-346 (466)
97 4fmz_A Internalin; leucine ric 99.7 2E-16 6.9E-21 152.3 15.7 167 83-257 132-300 (347)
98 2ell_A Acidic leucine-rich nuc 99.7 6.1E-17 2.1E-21 139.2 10.7 130 83-214 24-160 (168)
99 2wfh_A SLIT homolog 2 protein 99.7 2E-16 6.9E-21 139.3 13.6 124 112-237 15-140 (193)
100 2o6r_A Variable lymphocyte rec 99.7 1.3E-16 4.5E-21 138.4 12.0 109 131-239 30-140 (177)
101 2ell_A Acidic leucine-rich nuc 99.7 1.5E-16 5.2E-21 136.7 11.9 131 105-237 22-161 (168)
102 2ca6_A RAN GTPase-activating p 99.7 3E-18 1E-22 167.8 1.2 177 81-257 92-316 (386)
103 1xeu_A Internalin C; cellular 99.7 8.1E-17 2.8E-21 149.1 10.6 146 83-238 41-187 (263)
104 1xeu_A Internalin C; cellular 99.7 3E-16 1E-20 145.2 14.4 165 84-260 20-188 (263)
105 1jl5_A Outer protein YOPM; leu 99.7 4E-16 1.4E-20 155.8 16.1 161 83-258 131-291 (454)
106 3bz5_A Internalin-J, INLJ; leu 99.7 6.9E-16 2.4E-20 154.2 17.7 162 83-258 64-247 (457)
107 3bz5_A Internalin-J, INLJ; leu 99.7 6.6E-16 2.3E-20 154.4 17.5 143 82-237 41-184 (457)
108 2o6r_A Variable lymphocyte rec 99.7 4.5E-16 1.5E-20 135.0 13.9 137 69-218 3-141 (177)
109 4ay9_X Follicle-stimulating ho 99.7 1.2E-16 4E-21 154.4 10.9 189 71-259 7-217 (350)
110 2je0_A Acidic leucine-rich nuc 99.7 9.5E-17 3.2E-21 135.1 8.5 125 83-209 17-148 (149)
111 4b8c_D Glucose-repressible alc 99.7 1.9E-17 6.4E-22 174.7 2.8 140 98-241 215-359 (727)
112 2je0_A Acidic leucine-rich nuc 99.7 2E-16 6.9E-21 133.1 8.6 124 106-231 16-148 (149)
113 2ast_B S-phase kinase-associat 99.6 2.6E-17 9E-22 157.8 2.6 172 83-255 70-258 (336)
114 1jl5_A Outer protein YOPM; leu 99.6 2.2E-15 7.4E-20 150.5 16.5 161 83-258 91-271 (454)
115 2ast_B S-phase kinase-associat 99.6 1.1E-16 3.7E-21 153.5 6.0 172 83-254 93-282 (336)
116 2ca6_A RAN GTPase-activating p 99.6 4.5E-17 1.6E-21 159.4 2.3 175 83-257 60-287 (386)
117 1dce_A Protein (RAB geranylger 99.6 1.5E-17 5.2E-22 170.3 -1.5 152 83-240 349-550 (567)
118 2wfh_A SLIT homolog 2 protein 99.6 3E-15 1E-19 131.7 12.8 125 87-215 14-140 (193)
119 3goz_A Leucine-rich repeat-con 99.6 4.4E-17 1.5E-21 158.1 0.8 172 84-255 52-264 (362)
120 3goz_A Leucine-rich repeat-con 99.6 1.1E-16 3.8E-21 155.3 3.1 176 83-258 22-239 (362)
121 3g06_A SSPH2 (leucine-rich rep 99.6 6.9E-15 2.3E-19 151.8 15.0 74 84-166 41-114 (622)
122 1a9n_A U2A', U2A'; complex (nu 99.6 1.5E-15 5.1E-20 131.6 7.9 130 103-236 15-153 (176)
123 3g06_A SSPH2 (leucine-rich rep 99.6 1.3E-14 4.5E-19 149.7 15.3 33 84-120 82-114 (622)
124 3g39_A Variable lymphocyte rec 99.6 1.4E-14 4.7E-19 124.8 12.4 107 110-217 12-118 (170)
125 2r9u_A Variable lymphocyte rec 99.6 3E-14 1E-18 123.1 12.5 106 111-217 16-121 (174)
126 1ds9_A Outer arm dynein; leuci 99.5 4.6E-17 1.6E-21 144.0 -6.3 130 84-218 19-157 (198)
127 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-14 6.5E-19 124.6 9.0 128 83-215 19-154 (176)
128 1z7x_W Ribonuclease inhibitor; 99.5 1.4E-15 4.8E-20 152.2 1.7 174 84-257 86-297 (461)
129 1z7x_W Ribonuclease inhibitor; 99.5 5.6E-16 1.9E-20 155.1 -2.1 174 84-257 200-411 (461)
130 1dce_A Protein (RAB geranylger 99.5 6.9E-14 2.3E-18 143.2 13.1 118 108-230 442-567 (567)
131 4ay9_X Follicle-stimulating ho 99.5 4E-14 1.4E-18 136.6 10.4 173 82-255 53-234 (350)
132 3g39_A Variable lymphocyte rec 99.5 1.6E-13 5.5E-18 118.0 11.5 108 130-240 10-119 (170)
133 2r9u_A Variable lymphocyte rec 99.5 2.8E-13 9.4E-18 117.0 11.5 106 130-238 13-120 (174)
134 1ds9_A Outer arm dynein; leuci 99.5 2.7E-16 9.3E-21 139.1 -8.0 134 103-241 14-158 (198)
135 3un9_A NLR family member X1; l 99.4 3.3E-14 1.1E-18 138.0 -1.5 159 83-241 72-257 (372)
136 2ifg_A High affinity nerve gro 99.3 2.9E-12 9.9E-17 123.2 10.2 101 111-214 12-116 (347)
137 2ifg_A High affinity nerve gro 99.3 7.2E-12 2.5E-16 120.4 10.9 98 91-191 16-117 (347)
138 3sb4_A Hypothetical leucine ri 99.2 3.4E-11 1.1E-15 114.9 9.6 91 152-244 225-318 (329)
139 3un9_A NLR family member X1; l 99.1 4.9E-12 1.7E-16 122.7 0.2 133 83-215 101-253 (372)
140 3ogk_B Coronatine-insensitive 99.1 4.4E-12 1.5E-16 130.9 -2.4 174 83-257 293-526 (592)
141 3ogk_B Coronatine-insensitive 99.0 7.6E-11 2.6E-15 121.5 4.2 127 82-209 111-251 (592)
142 3sb4_A Hypothetical leucine ri 99.0 7.1E-10 2.4E-14 105.7 9.7 145 82-229 100-327 (329)
143 2p1m_B Transport inhibitor res 98.9 6E-11 2E-15 122.3 -3.7 172 83-256 289-493 (594)
144 2p1m_B Transport inhibitor res 98.9 1.3E-10 4.4E-15 119.8 -1.3 106 82-187 104-221 (594)
145 2ra8_A Uncharacterized protein 98.8 2.8E-09 9.5E-14 102.6 3.5 172 83-255 139-341 (362)
146 1io0_A Tropomodulin; LRR prote 98.7 2.4E-09 8.1E-14 93.1 0.8 115 99-213 28-163 (185)
147 3rw6_A Nuclear RNA export fact 98.7 8.6E-11 2.9E-15 107.6 -9.5 66 175-240 168-237 (267)
148 4fdw_A Leucine rich hypothetic 98.6 2.4E-07 8.1E-12 90.5 12.7 168 83-257 180-358 (401)
149 4fdw_A Leucine rich hypothetic 98.6 2E-07 6.9E-12 91.0 11.8 163 84-252 158-331 (401)
150 1io0_A Tropomodulin; LRR prote 98.6 1.2E-08 4E-13 88.6 2.5 109 82-190 35-164 (185)
151 2ra8_A Uncharacterized protein 98.6 4.8E-08 1.7E-12 93.9 7.0 172 83-257 107-320 (362)
152 3rw6_A Nuclear RNA export fact 98.3 2.8E-07 9.4E-12 84.3 4.8 94 134-229 148-257 (267)
153 3e4g_A ATP synthase subunit S, 98.1 2.3E-06 7.9E-11 72.7 5.0 84 129-212 61-150 (176)
154 1pgv_A TMD-1, tropomodulin TMD 97.8 4.9E-06 1.7E-10 72.0 2.3 21 100-120 34-55 (197)
155 3e4g_A ATP synthase subunit S, 97.7 9.7E-06 3.3E-10 68.8 2.3 38 83-120 61-99 (176)
156 1pgv_A TMD-1, tropomodulin TMD 97.7 2E-05 6.7E-10 68.2 4.3 82 81-162 39-135 (197)
157 3uim_A Brassinosteroid insensi 97.7 1.7E-05 5.9E-10 74.7 4.0 45 397-441 17-61 (326)
158 2qkw_B Protein kinase; three-h 97.6 1.8E-05 6.3E-10 74.5 2.3 44 398-441 27-70 (321)
159 3rfe_A Platelet glycoprotein I 97.3 0.00044 1.5E-08 55.7 6.7 56 111-166 12-68 (130)
160 2c30_A Serine/threonine-protei 97.3 0.00011 3.6E-09 69.3 2.8 44 398-441 23-77 (321)
161 3p1a_A MYT1 kinase, membrane-a 97.2 4.5E-05 1.5E-09 71.5 -0.3 32 410-441 57-89 (311)
162 4gt6_A Cell surface protein; l 97.2 0.00099 3.4E-08 64.5 9.2 107 102-212 260-368 (394)
163 4aoj_A High affinity nerve gro 97.2 0.00011 3.8E-09 69.4 2.2 27 415-441 46-78 (329)
164 4h09_A Hypothetical leucine ri 96.9 0.0025 8.6E-08 61.2 9.0 130 98-231 208-341 (379)
165 4fs7_A Uncharacterized protein 96.9 0.0081 2.8E-07 58.0 12.2 142 84-233 231-376 (394)
166 3rfe_A Platelet glycoprotein I 96.8 0.0018 6E-08 52.1 5.6 56 157-214 12-68 (130)
167 4h09_A Hypothetical leucine ri 96.7 0.0086 3E-07 57.4 11.2 128 102-233 189-320 (379)
168 4aw2_A Serine/threonine-protei 96.7 0.00043 1.5E-08 68.1 1.9 42 400-441 64-106 (437)
169 4gt6_A Cell surface protein; l 96.7 0.0036 1.2E-07 60.6 8.4 124 83-213 265-390 (394)
170 3dzo_A Rhoptry kinase domain; 96.7 0.00024 8.2E-09 69.5 -0.1 36 406-441 74-110 (413)
171 3omv_A RAF proto-oncogene seri 96.7 0.00067 2.3E-08 63.3 2.9 25 415-441 41-65 (307)
172 4fs7_A Uncharacterized protein 96.7 0.0059 2E-07 59.0 9.6 124 83-211 253-376 (394)
173 4g3f_A NF-kappa-beta-inducing 96.5 0.00072 2.5E-08 63.8 1.5 31 411-441 59-90 (336)
174 2vd5_A DMPK protein; serine/th 96.5 0.00088 3E-08 65.4 2.1 43 399-441 50-93 (412)
175 4fih_A Serine/threonine-protei 96.5 0.0011 3.9E-08 62.7 2.8 30 412-441 76-106 (346)
176 4ase_A Vascular endothelial gr 96.4 0.0011 3.8E-08 63.1 2.2 31 411-441 65-101 (353)
177 3kul_A Ephrin type-A receptor 96.3 0.0022 7.5E-08 60.3 3.8 27 415-441 54-84 (325)
178 4b99_A Mitogen-activated prote 96.3 0.0019 6.3E-08 62.7 3.0 31 411-441 55-86 (398)
179 3llt_A Serine/threonine kinase 96.2 0.0012 4.2E-08 62.8 1.5 44 398-441 23-67 (360)
180 1qcf_A Haematopoetic cell kina 96.1 0.0012 4.2E-08 65.2 0.9 33 409-441 187-219 (454)
181 4fie_A Serine/threonine-protei 96.1 0.0024 8.2E-08 62.2 2.9 31 411-441 152-183 (423)
182 3v8s_A RHO-associated protein 96.1 0.0021 7.3E-08 62.6 2.5 41 401-441 60-101 (410)
183 4aw0_A HPDK1, 3-phosphoinositi 96.0 0.0022 7.4E-08 59.9 2.0 30 412-441 34-64 (311)
184 3e7e_A HBUB1, BUB1A, mitotic c 96.0 0.001 3.4E-08 63.7 -0.4 35 407-441 62-102 (365)
185 3cek_A Dual specificity protei 95.9 0.0011 3.7E-08 61.8 -0.4 41 401-441 19-59 (313)
186 1zar_A RIO2 kinase; serine kin 95.9 0.0053 1.8E-07 56.5 4.2 40 402-441 82-121 (282)
187 2qol_A Ephrin receptor; recept 95.8 0.0028 9.5E-08 60.9 2.0 32 410-441 45-80 (373)
188 3an0_A Dual specificity mitoge 95.7 0.0023 7.8E-08 60.4 1.0 35 407-441 48-83 (340)
189 2zmd_A Dual specificity protei 95.7 0.0042 1.5E-07 60.0 2.6 30 412-441 58-87 (390)
190 1j1b_A Glycogen synthase kinas 95.6 0.0048 1.6E-07 60.2 2.6 28 414-441 58-86 (420)
191 2vx3_A Dual specificity tyrosi 95.6 0.0026 8.9E-08 61.2 0.7 35 407-441 51-86 (382)
192 2y7j_A Phosphorylase B kinase 95.5 0.005 1.7E-07 58.9 2.4 36 406-441 90-126 (365)
193 1vzo_A Ribosomal protein S6 ki 95.5 0.0052 1.8E-07 58.5 2.3 31 411-441 55-89 (355)
194 3cbl_A C-FES, proto-oncogene t 95.4 0.0048 1.6E-07 59.3 2.0 28 414-441 118-146 (377)
195 3p86_A Serine/threonine-protei 95.4 0.0035 1.2E-07 58.4 1.0 31 410-441 37-67 (309)
196 3byv_A Rhoptry kinase; malaria 95.4 0.004 1.4E-07 59.7 1.4 32 410-441 73-105 (377)
197 1zth_A RIO1 serine protein kin 95.4 0.008 2.7E-07 54.4 3.3 27 415-441 52-81 (258)
198 3op5_A Serine/threonine-protei 95.4 0.0046 1.6E-07 59.0 1.7 33 409-441 34-72 (364)
199 3uqc_A Probable conserved tran 95.4 0.0075 2.6E-07 55.4 3.0 27 415-441 36-63 (286)
200 1luf_A Muscle-specific tyrosin 95.3 0.0053 1.8E-07 57.8 1.9 39 403-441 40-84 (343)
201 3a99_A Proto-oncogene serine/t 95.3 0.0066 2.2E-07 56.7 2.5 32 410-441 43-75 (320)
202 2w4o_A Calcium/calmodulin-depe 95.3 0.0076 2.6E-07 57.2 2.9 34 408-441 51-85 (349)
203 1fmk_A C-SRC, P60-SRC, tyrosin 95.3 0.0064 2.2E-07 60.0 2.4 30 412-441 186-215 (452)
204 3v5w_A G-protein coupled recep 95.3 0.0064 2.2E-07 62.5 2.4 32 410-441 189-221 (689)
205 1mqb_A Ephrin type-A receptor 95.3 0.0089 3.1E-07 56.2 3.2 27 415-441 49-80 (333)
206 3mdy_A Bone morphogenetic prot 95.2 0.0052 1.8E-07 57.6 1.5 31 410-441 37-67 (337)
207 2k1k_A Ephrin type-A receptor 95.2 0.032 1.1E-06 33.7 4.4 29 298-326 6-34 (38)
208 2nru_A Interleukin-1 receptor- 95.2 0.011 3.7E-07 54.7 3.6 26 415-441 36-61 (307)
209 1u5q_A Serine/threonine protei 95.2 0.0075 2.6E-07 57.2 2.5 31 411-441 55-86 (348)
210 4gyi_A RIO2 kinase; protein ki 95.2 0.01 3.4E-07 57.0 3.3 27 415-441 100-126 (397)
211 3fhr_A MAP kinase-activated pr 95.1 0.0082 2.8E-07 56.6 2.4 27 415-441 34-61 (336)
212 3q60_A ROP5B; pseudokinase, tr 95.1 0.0085 2.9E-07 57.3 2.5 30 412-441 64-94 (371)
213 2iwi_A Serine/threonine-protei 95.1 0.0089 3E-07 55.4 2.5 33 409-441 30-63 (312)
214 3l9p_A Anaplastic lymphoma kin 95.0 0.0079 2.7E-07 57.5 2.1 30 412-441 73-108 (367)
215 2psq_A Fibroblast growth facto 95.0 0.0081 2.8E-07 57.5 2.1 30 412-441 83-120 (370)
216 2pml_X PFPK7, Ser/Thr protein 95.0 0.011 3.6E-07 55.9 2.8 31 410-441 31-61 (348)
217 2fst_X Mitogen-activated prote 95.0 0.0081 2.8E-07 57.5 2.0 32 410-441 29-61 (367)
218 2h8h_A Proto-oncogene tyrosine 95.0 0.0087 3E-07 60.4 2.3 30 412-441 269-298 (535)
219 3brb_A Proto-oncogene tyrosine 94.9 0.0051 1.7E-07 57.1 0.5 39 403-441 27-69 (313)
220 1wak_A Serine/threonine-protei 94.9 0.0092 3.1E-07 57.3 2.3 32 410-441 37-69 (397)
221 3kvw_A DYRK2, dual specificity 94.9 0.011 3.7E-07 57.8 2.8 30 412-441 99-129 (429)
222 4e7w_A Glycogen synthase kinas 94.9 0.009 3.1E-07 57.7 2.1 28 414-441 44-71 (394)
223 2pvf_A Fibroblast growth facto 94.8 0.0098 3.3E-07 55.9 2.1 30 412-441 37-74 (334)
224 3rp9_A Mitogen-activated prote 94.8 0.01 3.6E-07 58.5 2.3 32 410-441 53-85 (458)
225 1opk_A P150, C-ABL, proto-onco 94.8 0.0047 1.6E-07 61.7 -0.2 31 411-441 221-252 (495)
226 3lxp_A Non-receptor tyrosine-p 94.8 0.017 5.7E-07 53.9 3.5 27 415-441 36-67 (318)
227 2wqm_A Serine/threonine-protei 94.7 0.012 4.1E-07 54.5 2.5 30 412-441 34-64 (310)
228 4exu_A Mitogen-activated prote 94.7 0.011 3.9E-07 56.4 2.3 32 410-441 42-74 (371)
229 3gbz_A Kinase, CMGC CDK; ssgci 94.7 0.01 3.5E-07 55.7 1.9 31 411-441 35-66 (329)
230 2l2t_A Receptor tyrosine-prote 94.7 0.067 2.3E-06 33.3 4.9 25 304-328 12-36 (44)
231 2x4f_A Myosin light chain kina 94.7 0.012 4E-07 56.5 2.2 28 414-441 93-121 (373)
232 4dc2_A Protein kinase C IOTA t 94.6 0.013 4.3E-07 56.8 2.3 31 411-441 53-84 (396)
233 1b6c_B TGF-B superfamily recep 94.6 0.01 3.4E-07 55.8 1.5 31 410-441 42-72 (342)
234 2ks1_B Epidermal growth factor 94.6 0.067 2.3E-06 33.4 4.7 25 304-328 13-37 (44)
235 1k9a_A Carboxyl-terminal SRC k 94.5 0.012 4.2E-07 57.9 2.1 30 411-441 194-223 (450)
236 3nsz_A CK II alpha, casein kin 94.5 0.014 4.8E-07 54.5 2.4 30 412-441 38-68 (330)
237 3c4z_A Rhodopsin kinase; Ser/T 94.5 0.014 4.7E-07 58.9 2.5 32 410-441 185-217 (543)
238 3ll6_A Cyclin G-associated kin 94.5 0.012 4.3E-07 54.9 2.0 30 412-441 30-60 (337)
239 1rdq_E PKA C-alpha, CAMP-depen 94.5 0.015 5E-07 55.2 2.5 30 412-441 43-73 (350)
240 3com_A Serine/threonine-protei 94.5 0.016 5.4E-07 53.7 2.6 32 410-441 29-61 (314)
241 3lm5_A Serine/threonine-protei 94.5 0.018 6.3E-07 53.8 3.1 27 415-441 34-61 (327)
242 3eqc_A Dual specificity mitoge 94.5 0.015 5.2E-07 55.2 2.5 30 412-441 35-65 (360)
243 2acx_A G protein-coupled recep 94.5 0.013 4.3E-07 59.6 2.0 33 409-441 183-216 (576)
244 2jii_A Serine/threonine-protei 94.4 0.011 3.6E-07 56.1 1.2 30 412-441 44-82 (352)
245 2buj_A Serine/threonine-protei 94.4 0.014 4.7E-07 54.2 2.0 30 412-441 31-61 (317)
246 3ttj_A Mitogen-activated prote 94.3 0.016 5.4E-07 57.4 2.4 32 410-441 62-94 (464)
247 3i6u_A CDS1, serine/threonine- 94.3 0.019 6.6E-07 55.9 3.0 33 409-441 134-167 (419)
248 1rjb_A FL cytokine receptor; k 94.3 0.011 3.6E-07 55.8 1.1 33 409-441 44-82 (344)
249 3tt0_A Basic fibroblast growth 94.3 0.014 4.7E-07 56.1 1.8 31 411-441 70-108 (382)
250 2h34_A Serine/threonine-protei 94.3 0.02 6.8E-07 53.1 2.9 31 411-441 35-66 (309)
251 2r5t_A Serine/threonine-protei 94.3 0.018 6.2E-07 55.1 2.6 31 411-441 39-70 (373)
252 4ejn_A RAC-alpha serine/threon 94.2 0.013 4.5E-07 57.5 1.5 32 410-441 148-180 (446)
253 2w1i_A JAK2; chromosomal rearr 94.2 0.017 5.7E-07 54.0 2.2 27 415-441 46-77 (326)
254 2yfx_A Tyrosine-protein kinase 94.1 0.019 6.5E-07 53.6 2.4 31 411-441 31-67 (327)
255 4fl3_A Tyrosine-protein kinase 94.1 0.021 7.1E-07 58.9 2.8 27 415-441 374-403 (635)
256 3uto_A Twitchin; kinase, muscl 94.0 0.019 6.5E-07 58.4 2.3 31 411-441 158-189 (573)
257 2v62_A Serine/threonine-protei 93.9 0.013 4.3E-07 55.4 0.7 30 412-441 39-72 (345)
258 3pfq_A PKC-B, PKC-beta, protei 93.9 0.025 8.5E-07 58.7 2.9 32 410-441 341-373 (674)
259 2ozo_A Tyrosine-protein kinase 93.8 0.028 9.5E-07 57.7 2.9 25 417-441 343-370 (613)
260 1nxk_A MAP kinase-activated pr 93.7 0.032 1.1E-06 54.0 3.1 26 416-441 68-94 (400)
261 1kob_A Twitchin; kinase, intra 93.6 0.027 9.2E-07 54.3 2.4 31 411-441 52-83 (387)
262 3c1x_A Hepatocyte growth facto 93.6 0.026 8.9E-07 54.0 2.3 27 415-441 94-124 (373)
263 2pzi_A Probable serine/threoni 93.5 0.027 9.1E-07 58.6 2.4 32 410-441 80-113 (681)
264 2i1m_A Macrophage colony-stimu 93.4 0.026 8.8E-07 52.8 1.8 33 409-441 45-83 (333)
265 2bdw_A Hypothetical protein K1 93.3 0.022 7.6E-07 54.2 1.2 31 411-441 30-61 (362)
266 2y4i_B KSR2, HKSR2, kinase sup 93.1 0.037 1.3E-06 51.3 2.4 32 408-441 31-62 (319)
267 2owb_A Serine/threonine-protei 93.0 0.03 1E-06 52.6 1.6 30 412-441 43-73 (335)
268 2jwa_A Receptor tyrosine-prote 92.8 0.17 6E-06 31.4 4.3 10 304-313 13-22 (44)
269 3q5i_A Protein kinase; CDPK, m 92.7 0.048 1.6E-06 54.4 2.7 32 410-441 36-68 (504)
270 3lij_A Calcium/calmodulin depe 92.2 0.079 2.7E-06 52.7 3.6 30 412-441 39-69 (494)
271 2j0j_A Focal adhesion kinase 1 91.9 0.05 1.7E-06 56.3 1.7 32 410-441 390-425 (656)
272 3lb7_A RAF proto-oncogene seri 91.6 0.088 3E-06 48.6 2.9 29 411-441 37-65 (307)
273 3en9_A Glycoprotease, O-sialog 90.4 0.15 5.3E-06 51.2 3.6 27 414-441 340-366 (540)
274 2l34_A TYRO protein tyrosine k 81.6 2.1 7.2E-05 24.7 3.7 28 300-327 4-31 (33)
275 2k9y_A Ephrin type-A receptor 78.5 1.3 4.4E-05 27.0 2.3 11 304-314 15-25 (41)
276 2klu_A T-cell surface glycopro 68.3 13 0.00045 25.0 5.3 28 305-332 13-40 (70)
277 2knc_A Integrin alpha-IIB; tra 61.7 28 0.00095 22.5 5.8 25 300-324 10-34 (54)
278 2l8s_A Integrin alpha-1; trans 60.9 26 0.0009 22.6 5.5 23 302-324 9-31 (54)
279 2ks1_B Epidermal growth factor 51.9 21 0.00071 22.1 3.8 29 301-330 14-42 (44)
280 2k1a_A Integrin alpha-IIB; sin 49.3 32 0.0011 21.0 4.3 25 300-324 8-32 (42)
281 1afo_A Glycophorin A; integral 39.5 47 0.0016 19.7 3.7 13 304-316 11-23 (40)
282 2knc_B Integrin beta-3; transm 36.4 24 0.00081 24.9 2.7 12 304-315 13-24 (79)
283 2olc_A MTR kinase, methylthior 32.0 26 0.00089 32.9 3.1 26 416-441 36-62 (397)
284 2jp3_A FXYD domain-containing 30.1 59 0.002 21.9 3.5 13 305-317 19-31 (67)
285 2lz0_A Uncharacterized protein 29.8 55 0.0019 24.1 3.9 36 148-184 15-50 (100)
286 2lz0_A Uncharacterized protein 25.9 65 0.0022 23.6 3.7 46 165-211 8-53 (100)
287 2jo1_A Phospholemman; FXYD1, N 24.5 1.5E+02 0.0051 20.2 4.7 12 305-316 18-29 (72)
288 2k9j_B Integrin beta-3; transm 23.2 84 0.0029 19.1 3.1 6 307-312 15-20 (43)
289 2knc_B Integrin beta-3; transm 22.2 87 0.003 22.0 3.5 15 305-319 10-24 (79)
290 1q55_A EP-cadherin, C-cadherin 21.5 20 0.00067 38.2 0.0 20 300-319 702-721 (880)
291 2llm_A Amyloid beta A4 protein 24.2 24 0.00082 21.5 0.0 7 304-310 18-24 (43)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.6e-31 Score=255.00 Aligned_cols=219 Identities=26% Similarity=0.453 Sum_probs=199.7
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCccEEecC----CcEEEEEeCCCCCCc--ccchhccCCCCCCE
Q 013460 38 TTDSSDVQALQVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEG----SAVVSIDISGLGLSG--TMGYLLSDLLSLRK 111 (442)
Q Consensus 38 ~~~~~~~~~L~~~~~~~~~~~~l~~w~~~~~~~c~~~w~gv~c~~----~~l~~L~L~~n~l~~--~~~~~~~~l~~L~~ 111 (442)
.|.++|.+||++||.++.++..+.+|.. ..+||.+.|.||.|.. .+|+.|+|++|++.+ .+|..+.++++|++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~-~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCT-TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCC-CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 4788999999999999987778889974 4678854599999985 689999999999999 89999999999999
Q ss_pred EEccC-CCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCC
Q 013460 112 FDLSG-NSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNN 188 (442)
Q Consensus 112 L~l~~-n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 188 (442)
|+|++ |.+.+.+|..+. ++|++|+|++|.+++.+|..+.++++|++|+|++|++++.+|..+..+++|++|+|++|+
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 99995 999999998887 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhccCCC-CCCEEEcccCcCCccCc-cCCCCCccEEEeecccCcccCChhc---cccccccccCCcCC
Q 013460 189 FSGDLPNSFISLS-NISSLYLQNNQVTGSLN-VFSGLPLTTLNVANNHFSGWIPREL---ISIRTFIYDGNSFD 257 (442)
Q Consensus 189 l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~~-~~~~l~L~~L~ls~N~l~~~~p~~~---~~l~~l~~~~n~~~ 257 (442)
+++.+|..+..++ +|++|++++|++++.++ .+..+.|+.|++++|.+++.+|..+ .+++.|++++|.+.
T Consensus 161 l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 9999999999998 99999999999997665 6666779999999999999888654 56778889999986
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=4.3e-27 Score=250.77 Aligned_cols=218 Identities=24% Similarity=0.326 Sum_probs=158.7
Q ss_pred hhcCCChHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCccEEecCCcEEEEEeCCCCCCcc---cc-----------
Q 013460 35 VQCTTDSSDVQALQVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEGSAVVSIDISGLGLSGT---MG----------- 100 (442)
Q Consensus 35 ~~~~~~~~~~~~L~~~~~~~~~~~~l~~w~~~~~~~c~~~w~gv~c~~~~l~~L~L~~n~l~~~---~~----------- 100 (442)
+++++.++|.+||++||.++.++..+.+|. ...+|| .|.||.|+.++|+.|+|+++.+.|. +|
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~~l~~W~-~~~~~C--~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKNLLPDWS-SNKNPC--TFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTTSSTTCC-TTSCGG--GSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred ccccCCHHHHHHHHHHHhhCCCcccccCCC-CCCCCc--CCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 445567889999999999998766889997 356788 8999999988999999999999886 54
Q ss_pred ------------hhccCCCCCCEEEccCCCCCCCCCC--Ccc--CCCcEEEccCCcCCCCccccc-cCCCCCCEEEcccC
Q 013460 101 ------------YLLSDLLSLRKFDLSGNSIHDTIPY--QLP--PNLTSLNLASNNFSGNLPYSI-ASMVSLSYLNVSRN 163 (442)
Q Consensus 101 ------------~~~~~l~~L~~L~l~~n~l~~~~p~--~~~--~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n 163 (442)
..+..+++|++|+|++|.+.+.+|. .+. ++|++|+|++|.+++.+|..+ .++++|++|+|++|
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 3566777888888888888877776 555 788888888888877777665 67788888888888
Q ss_pred cCCCchhhh---hcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccC
Q 013460 164 SLTQSIGDI---FGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWI 239 (442)
Q Consensus 164 ~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~ 239 (442)
++++..|.. +.++++|++|++++|.+++.+|. ..+++|++|+|++|++++.++.+..++ |++|++++|.+++.+
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCH
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcc
Confidence 887777665 56666666666666666655443 566667777777777766665566666 777777777776666
Q ss_pred Chhc---cccccccccCCcCC
Q 013460 240 PREL---ISIRTFIYDGNSFD 257 (442)
Q Consensus 240 p~~~---~~l~~l~~~~n~~~ 257 (442)
|..+ .+++.|++++|.+.
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFV 260 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCE
T ss_pred cHHHhcCCCCCEEECCCCccc
Confidence 6443 34455556666554
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2e-27 Score=253.27 Aligned_cols=216 Identities=17% Similarity=0.315 Sum_probs=158.4
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCCCCCCCCC----CCCCCCCC------------ccEEecC-CcEEEEEeCCCCCCccc
Q 013460 37 CTTDSSDVQALQVLYTSLNSPSVLTNWKGNE----GDPCGESW------------KGVACEG-SAVVSIDISGLGLSGTM 99 (442)
Q Consensus 37 ~~~~~~~~~~L~~~~~~~~~~~~l~~w~~~~----~~~c~~~w------------~gv~c~~-~~l~~L~L~~n~l~~~~ 99 (442)
+++..+|.+||++||.+++++ +|.... .+||.|.| .||.|+. ++|+.|+|+++++.|.+
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred cccchHHHHHHHHHHHHcCCC----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence 344568999999999999876 676443 57744489 9999984 79999999999999999
Q ss_pred chhccCCCCCCEEEc-cCCCCCCC--------------------------------------------------------
Q 013460 100 GYLLSDLLSLRKFDL-SGNSIHDT-------------------------------------------------------- 122 (442)
Q Consensus 100 ~~~~~~l~~L~~L~l-~~n~l~~~-------------------------------------------------------- 122 (442)
|+.+++|++|++|+| ++|.+.|.
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence 999999999999999 77755443
Q ss_pred --------------------CCCCcc--CCCcEEEccCCcCCC-----------------Ccccccc--CCCCCCEEEcc
Q 013460 123 --------------------IPYQLP--PNLTSLNLASNNFSG-----------------NLPYSIA--SMVSLSYLNVS 161 (442)
Q Consensus 123 --------------------~p~~~~--~~L~~L~Ls~n~l~~-----------------~~p~~~~--~l~~L~~L~L~ 161 (442)
+|..+. ++|++|+|++|.+++ .+|..++ ++++|++|+|+
T Consensus 420 ~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls 499 (876)
T 4ecn_A 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499 (876)
T ss_dssp CCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred ccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence 555554 788889999998887 3788877 88888888888
Q ss_pred cCcCCCchhhhhcCCCCCcEEeCCCCC-CCC-CCchhccCCC-------CCCEEEcccCcCCccCc--cCCCCC-ccEEE
Q 013460 162 RNSLTQSIGDIFGNLAGLATLDLSFNN-FSG-DLPNSFISLS-------NISSLYLQNNQVTGSLN--VFSGLP-LTTLN 229 (442)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~~p~~l~~l~-------~L~~L~Ls~N~l~~~~~--~~~~l~-L~~L~ 229 (442)
+|++.+.+|..+.++++|++|+|++|+ ++| .+|..+..++ +|+.|+|++|+++..+. .+..++ |+.|+
T Consensus 500 ~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~ 579 (876)
T 4ecn_A 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD 579 (876)
T ss_dssp SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEE
T ss_pred CCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEE
Confidence 888888888888888888888888887 776 5666554443 66666666666663333 355555 66666
Q ss_pred eecccCcccCC--hhccccccccccCCcCC
Q 013460 230 VANNHFSGWIP--RELISIRTFIYDGNSFD 257 (442)
Q Consensus 230 ls~N~l~~~~p--~~~~~l~~l~~~~n~~~ 257 (442)
|++|.++ .+| ..+.+|+.|++++|.+.
T Consensus 580 Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 580 CVHNKVR-HLEAFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp CTTSCCC-BCCCCCTTSEESEEECCSSCCS
T ss_pred CCCCCcc-cchhhcCCCcceEEECcCCccc
Confidence 6666665 444 11233444555555554
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.7e-27 Score=248.42 Aligned_cols=214 Identities=18% Similarity=0.314 Sum_probs=172.8
Q ss_pred CChHHHHHHHHHHHhCCCCCCC---------CCCCCCCCCCCCCCC---ccEEecC-CcEEEEEeCCCCCCcccchhccC
Q 013460 39 TDSSDVQALQVLYTSLNSPSVL---------TNWKGNEGDPCGESW---KGVACEG-SAVVSIDISGLGLSGTMGYLLSD 105 (442)
Q Consensus 39 ~~~~~~~~L~~~~~~~~~~~~l---------~~w~~~~~~~c~~~w---~gv~c~~-~~l~~L~L~~n~l~~~~~~~~~~ 105 (442)
....|..||.+++.++++++|. .+|.. ..++| .| .||.|+. ++|+.|+|+++++.|.+|+.+++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-~~~~c--~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~ 103 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-NKELD--MWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQ 103 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-SSCGG--GTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGG
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-CCCcc--cccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhc
Confidence 4457999999999999887653 36874 45677 89 9999975 69999999999999999999999
Q ss_pred CCCCCEEEccCCCC------------------------------------------------------------------
Q 013460 106 LLSLRKFDLSGNSI------------------------------------------------------------------ 119 (442)
Q Consensus 106 l~~L~~L~l~~n~l------------------------------------------------------------------ 119 (442)
|++|++|+|++|.+
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 183 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence 99999999998843
Q ss_pred ------------CCCCCCCcc--CCCcEEEccCCcCCCC-----------------cccccc--CCCCCCEEEcccCcCC
Q 013460 120 ------------HDTIPYQLP--PNLTSLNLASNNFSGN-----------------LPYSIA--SMVSLSYLNVSRNSLT 166 (442)
Q Consensus 120 ------------~~~~p~~~~--~~L~~L~Ls~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~ 166 (442)
++ +|..+. ++|++|+|++|.+++. +|..++ ++++|++|+|++|++.
T Consensus 184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~ 262 (636)
T 4eco_A 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262 (636)
T ss_dssp CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence 34 666665 8999999999999985 898888 9999999999999999
Q ss_pred CchhhhhcCCCCCcEEeCCCCC-CCC-CCchhccCC------CCCCEEEcccCcCCccCc--cCCCCC-ccEEEeecccC
Q 013460 167 QSIGDIFGNLAGLATLDLSFNN-FSG-DLPNSFISL------SNISSLYLQNNQVTGSLN--VFSGLP-LTTLNVANNHF 235 (442)
Q Consensus 167 ~~~p~~~~~l~~L~~L~Ls~N~-l~~-~~p~~l~~l------~~L~~L~Ls~N~l~~~~~--~~~~l~-L~~L~ls~N~l 235 (442)
+.+|..+.++++|++|+|++|+ ++| .+|..+..+ ++|++|+|++|+++..+. .+..++ |+.|++++|.+
T Consensus 263 ~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCC
T ss_pred ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcC
Confidence 9999889999999999999998 887 788777765 788888888888874444 477776 88888888877
Q ss_pred cccCChhc---cccccccccCCcCC
Q 013460 236 SGWIPREL---ISIRTFIYDGNSFD 257 (442)
Q Consensus 236 ~~~~p~~~---~~l~~l~~~~n~~~ 257 (442)
+|.+| .+ .+++.|++++|.+.
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSEEE
T ss_pred ccchh-hhCCCCCCCEEECCCCccc
Confidence 77666 33 34455556665554
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.2e-26 Score=222.67 Aligned_cols=213 Identities=20% Similarity=0.280 Sum_probs=184.4
Q ss_pred CChHHHHHHHHHHHhCC-C-CCCCCCCC---CCCCCCCCCCCccEEecC----------CcEEEEEeCCCCCCcccchhc
Q 013460 39 TDSSDVQALQVLYTSLN-S-PSVLTNWK---GNEGDPCGESWKGVACEG----------SAVVSIDISGLGLSGTMGYLL 103 (442)
Q Consensus 39 ~~~~~~~~L~~~~~~~~-~-~~~l~~w~---~~~~~~c~~~w~gv~c~~----------~~l~~L~L~~n~l~~~~~~~~ 103 (442)
...+|.+||+.|+..+. + .+++..|. ....++| .|.|+.|.. .+|+.|+|++|++. .+|..+
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~--~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE--TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSC--CSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhccccccccccc--ccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 45688999999999773 2 34677884 3345666 899999952 78999999999998 678888
Q ss_pred cCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcC------
Q 013460 104 SDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGN------ 175 (442)
Q Consensus 104 ~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~------ 175 (442)
.++++|++|+|++|.++ .+|..+. ++|++|+|++|.++ .+|..+.++++|++|+|++|++.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 89999999999999999 7888777 99999999999999 88999999999999999999998888887654
Q ss_pred ---CCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccCChhc---ccccc
Q 013460 176 ---LAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWIPREL---ISIRT 248 (442)
Q Consensus 176 ---l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~p~~~---~~l~~ 248 (442)
+++|++|+|++|+++ .+|..+..+++|++|+|++|++++.++.+..++ |+.|+|++|.+.+.+|..+ .+|+.
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 899999999999999 889999999999999999999998777788887 9999999999999888654 56778
Q ss_pred ccccCCcCC
Q 013460 249 FIYDGNSFD 257 (442)
Q Consensus 249 l~~~~n~~~ 257 (442)
|++++|.+.
T Consensus 258 L~L~~n~~~ 266 (328)
T 4fcg_A 258 LILKDCSNL 266 (328)
T ss_dssp EECTTCTTC
T ss_pred EECCCCCch
Confidence 888888775
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=7.3e-24 Score=225.89 Aligned_cols=88 Identities=28% Similarity=0.407 Sum_probs=47.5
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNV 160 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (442)
.+++.|+|++|.+.+.+|..+..+++|++|+|++|++++.+|..+. ++|++|+|++|.+++.+|..+..+++|++|++
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 4555555555555555555555555555555555555555555444 55555555555555555555555555555555
Q ss_pred ccCcCCCchh
Q 013460 161 SRNSLTQSIG 170 (442)
Q Consensus 161 ~~n~l~~~~p 170 (442)
++|+++|.+|
T Consensus 546 s~N~l~g~ip 555 (768)
T 3rgz_A 546 NTNLFNGTIP 555 (768)
T ss_dssp CSSEEESBCC
T ss_pred CCCccCCcCC
Confidence 5554444333
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=3.3e-23 Score=193.01 Aligned_cols=187 Identities=23% Similarity=0.289 Sum_probs=142.0
Q ss_pred CCccEEecC-----------CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCc
Q 013460 74 SWKGVACEG-----------SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNN 140 (442)
Q Consensus 74 ~w~gv~c~~-----------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~ 140 (442)
.|..+.|.. ..++.|+|++|++.+..+..|..+++|++|+|++|.++...+..+. ++|++|+|++|.
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 466666653 2477888888888877777788888888888888888755444443 788888888888
Q ss_pred CCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-c
Q 013460 141 FSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-V 219 (442)
Q Consensus 141 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~ 219 (442)
+++..+..+..+++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++..+ .
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 176 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhH
Confidence 886666677788888888888888887777778888888888888888886666667888888888888888887665 4
Q ss_pred CCCCC-ccEEEeecccCcccCChh---ccccccccccCCcCCCCC
Q 013460 220 FSGLP-LTTLNVANNHFSGWIPRE---LISIRTFIYDGNSFDNGP 260 (442)
Q Consensus 220 ~~~l~-L~~L~ls~N~l~~~~p~~---~~~l~~l~~~~n~~~~~~ 260 (442)
+..++ |+.|+|++|.+++..+.. +.+++.|++.+|++.|.+
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 66666 888888888887655543 456677788888887643
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=9e-24 Score=201.20 Aligned_cols=175 Identities=29% Similarity=0.378 Sum_probs=150.6
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCC-CCCEE
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMV-SLSYL 158 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L 158 (442)
..++++|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..+. ++|++|+|++|.+++.+|..+..++ +|++|
T Consensus 100 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence 36799999999999999999999999999999999999998888776 8999999999999999999999998 99999
Q ss_pred EcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcc
Q 013460 159 NVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSG 237 (442)
Q Consensus 159 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~ 237 (442)
+|++|++++.+|..+..+. |++|+|++|.+++.+|..+..+++|+.|+|++|.+++.++.+..++ |++|++++|.+++
T Consensus 180 ~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 180 TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp ECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE
T ss_pred ECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccC
Confidence 9999999988888888887 8888888888888888888888888888888888887777666666 8888888888887
Q ss_pred cCChhc---cccccccccCCcCC
Q 013460 238 WIPREL---ISIRTFIYDGNSFD 257 (442)
Q Consensus 238 ~~p~~~---~~l~~l~~~~n~~~ 257 (442)
.+|..+ .+++.|++++|.+.
T Consensus 259 ~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 259 TLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEE
T ss_pred cCChHHhcCcCCCEEECcCCccc
Confidence 777654 44566777787775
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.6e-22 Score=186.24 Aligned_cols=182 Identities=23% Similarity=0.287 Sum_probs=157.3
Q ss_pred CCccEEecCCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccC
Q 013460 74 SWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIAS 151 (442)
Q Consensus 74 ~w~gv~c~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~ 151 (442)
.|.|..|.. ..+.+++++++++. +|..+. ++|+.|+|++|.+++..+..+. ++|++|+|++|.+++..+..+..
T Consensus 6 ~~~gC~C~~-~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 81 (251)
T 3m19_A 6 TVTGCTCNE-GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81 (251)
T ss_dssp HHHSSEEEG-GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCCceEcCC-CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc
Confidence 688888853 34578999999884 444443 5899999999999988887776 99999999999999888888999
Q ss_pred CCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEE
Q 013460 152 MVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLN 229 (442)
Q Consensus 152 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ 229 (442)
+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++.++ .+..++ |+.|+
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 9999999999999998888889999999999999999997777778999999999999999998776 578887 99999
Q ss_pred eecccCcccCChh---ccccccccccCCcCCCC
Q 013460 230 VANNHFSGWIPRE---LISIRTFIYDGNSFDNG 259 (442)
Q Consensus 230 ls~N~l~~~~p~~---~~~l~~l~~~~n~~~~~ 259 (442)
|++|.+++..+.. +.+++.|++.+|++.|.
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999999877654 45678899999999864
No 10
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=2.3e-22 Score=179.81 Aligned_cols=173 Identities=22% Similarity=0.273 Sum_probs=118.5
Q ss_pred CCCCCCCccEEecCC-----------cEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEE
Q 013460 69 DPCGESWKGVACEGS-----------AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLN 135 (442)
Q Consensus 69 ~~c~~~w~gv~c~~~-----------~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~ 135 (442)
+.|.+.|.+|.|... ++++|+|++|++.+..+..+..+++|++|+|++|++++..+..+. ++|++|+
T Consensus 3 ~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 356558999999642 467777777777766666677777777777777777755444443 6777777
Q ss_pred ccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCc
Q 013460 136 LASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTG 215 (442)
Q Consensus 136 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 215 (442)
|++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|.+.+
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 77777775555556777777777777777776666566777777777777777775555556777777777777776654
Q ss_pred cCccCCCCC-ccEEEeecccCcccCChhccccc
Q 013460 216 SLNVFSGLP-LTTLNVANNHFSGWIPRELISIR 247 (442)
Q Consensus 216 ~~~~~~~l~-L~~L~ls~N~l~~~~p~~~~~l~ 247 (442)
. ++ |+.|+++.|.++|.+|..+.++.
T Consensus 163 ~------~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 T------CPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp C------TTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred C------CCCHHHHHHHHHhCCceeeccCcccc
Confidence 3 23 56667777777777776655443
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=7.7e-22 Score=185.22 Aligned_cols=176 Identities=22% Similarity=0.251 Sum_probs=137.8
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCc-CCCCccccccCCCCCCEEE
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNN-FSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~ 159 (442)
.+++.|+|++|.+.+..+..+..+++|++|+|++|.+++..|..+. ++|++|+|++|. ++...|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 4678888888888877777788888888888888888877676666 788888888886 7766677788888888888
Q ss_pred cccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCcc
Q 013460 160 VSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSG 237 (442)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~ 237 (442)
|++|++++..|..+..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..+ .+..++ |+.|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 88888887777778888888888888888886666667888888888888888887665 466666 8888888888887
Q ss_pred cCChhc---cccccccccCCcCCC
Q 013460 238 WIPREL---ISIRTFIYDGNSFDN 258 (442)
Q Consensus 238 ~~p~~~---~~l~~l~~~~n~~~~ 258 (442)
..|..+ .+++.|++++|.+..
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCHhHccCcccccEeeCCCCcCCc
Confidence 766554 456677788887764
No 12
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.8e-21 Score=183.22 Aligned_cols=176 Identities=23% Similarity=0.219 Sum_probs=155.5
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEccc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR 162 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (442)
.+++.|+|++|.+.+..+..+..+++|++|+|++|.|++..+....++|++|+|++|.++ .+|..+..+++|++|+|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCC
Confidence 578999999999999989999999999999999999997655544499999999999998 7788899999999999999
Q ss_pred CcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCcccCC
Q 013460 163 NSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSGWIP 240 (442)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~~~p 240 (442)
|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++.++ .+..++ |+.|+|++|.++ .+|
T Consensus 110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip 188 (290)
T 1p9a_G 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188 (290)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence 99998888889999999999999999998777778999999999999999998776 467777 999999999998 455
Q ss_pred hhc---cccccccccCCcCCCCC
Q 013460 241 REL---ISIRTFIYDGNSFDNGP 260 (442)
Q Consensus 241 ~~~---~~l~~l~~~~n~~~~~~ 260 (442)
..+ .+++.+++.+|++.|.+
T Consensus 189 ~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 189 KGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TTTTTTCCCSEEECCSCCBCCSG
T ss_pred hhhcccccCCeEEeCCCCccCcC
Confidence 443 45778899999998753
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=2e-21 Score=182.34 Aligned_cols=177 Identities=23% Similarity=0.269 Sum_probs=151.9
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCC-CCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNS-IHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
.+|+.|+|++|.+.+..+..+..+++|++|+|++|. +....+..+. ++|++|++++|.+++..|..+.++++|++|+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 689999999999998888899999999999999997 7766666665 8999999999999988888889999999999
Q ss_pred cccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCcc
Q 013460 160 VSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSG 237 (442)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~ 237 (442)
|++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|+|++|.+++..+ .+..++ |+.|++++|.+++
T Consensus 136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence 99999998777778899999999999999986666678899999999999999988754 677777 9999999999997
Q ss_pred cCChh---ccccccccccCCcCCCC
Q 013460 238 WIPRE---LISIRTFIYDGNSFDNG 259 (442)
Q Consensus 238 ~~p~~---~~~l~~l~~~~n~~~~~ 259 (442)
..+.. +.+++.|++++|++.|.
T Consensus 216 ~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 216 LPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CCHHHcccCcccCEEeccCCCccCC
Confidence 66543 45677888999999764
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=1.3e-21 Score=195.84 Aligned_cols=182 Identities=20% Similarity=0.226 Sum_probs=123.5
Q ss_pred CCccEEecC-----------CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCc
Q 013460 74 SWKGVACEG-----------SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNN 140 (442)
Q Consensus 74 ~w~gv~c~~-----------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~ 140 (442)
.|..|.|.. .+++.|+|++|++++..+..|.++++|++|+|++|.|++..+..+. ++|++|+|++|.
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 467788864 3689999999999998899999999999999999999987777776 889999999999
Q ss_pred CCCCccccccCCCCCCEEEcccCcCCCchhhh-------------------------hcCCCCCcEEeCCCCCCCCCCch
Q 013460 141 FSGNLPYSIASMVSLSYLNVSRNSLTQSIGDI-------------------------FGNLAGLATLDLSFNNFSGDLPN 195 (442)
Q Consensus 141 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-------------------------~~~l~~L~~L~Ls~N~l~~~~p~ 195 (442)
++...+..|..+++|++|+|++|+++...+.. |..+++|++|+|++|++++ +|
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-
Confidence 98776677888888888888888877544433 3344455555555555542 22
Q ss_pred hccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCcccCChh---ccccccccccCCcCC
Q 013460 196 SFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSGWIPRE---LISIRTFIYDGNSFD 257 (442)
Q Consensus 196 ~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~~~p~~---~~~l~~l~~~~n~~~ 257 (442)
.+..+++|+.|+|++|++++..+ .+..++ |+.|+|++|.+++..+.. +.+|+.|++++|.+.
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 24445555555555555555433 344454 566666666555544433 234445555555554
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=3.6e-21 Score=177.24 Aligned_cols=157 Identities=22% Similarity=0.279 Sum_probs=144.4
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNV 160 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (442)
.+++.|+|++|++.+..+..+..+++|++|+|++|.+++..+..+. ++|++|+|++|.+++..+..+..+++|++|+|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 4689999999999999999999999999999999999988877666 99999999999999888888999999999999
Q ss_pred ccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCccc
Q 013460 161 SRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSGW 238 (442)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~~ 238 (442)
++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++.++ .+..++ |+.|+|++|.+.+.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999998887788999999999999999997777789999999999999999998776 677887 99999999999876
Q ss_pred C
Q 013460 239 I 239 (442)
Q Consensus 239 ~ 239 (442)
.
T Consensus 195 ~ 195 (251)
T 3m19_A 195 R 195 (251)
T ss_dssp S
T ss_pred c
Confidence 3
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=1.7e-21 Score=186.71 Aligned_cols=172 Identities=19% Similarity=0.272 Sum_probs=151.3
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccC--------
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIAS-------- 151 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~-------- 151 (442)
..++++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+. ++|++|+|++|++.+.+|..+..
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 468999999999999 88889999999999999999999 6787776 89999999999998899887764
Q ss_pred -CCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEE
Q 013460 152 -MVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTL 228 (442)
Q Consensus 152 -l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L 228 (442)
+++|++|+|++|+++ .+|..+..+++|++|+|++|.+++ +|..+..+++|++|+|++|++.+.++ .+..++ |+.|
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 999999999999998 778889999999999999999994 67779999999999999999988776 577787 9999
Q ss_pred EeecccCcccCChhc---cccccccccCCcCC
Q 013460 229 NVANNHFSGWIPREL---ISIRTFIYDGNSFD 257 (442)
Q Consensus 229 ~ls~N~l~~~~p~~~---~~l~~l~~~~n~~~ 257 (442)
+|++|.+.+.+|..+ .+|+.|++++|.+.
T Consensus 259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred ECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 999999999998654 55677889998875
No 17
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=2.6e-21 Score=180.75 Aligned_cols=176 Identities=20% Similarity=0.229 Sum_probs=148.1
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNV 160 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (442)
.+++.|+|++|++++..+..+..+++|++|+|++|.+++..+..+. ++|++|+|++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 3689999999999988888999999999999999999977776665 89999999999999888888999999999999
Q ss_pred ccCcCCCchhhhhcCCCCCcEEeCCCCCCCCC-CchhccCCCCCCEEEcccCcCCccCc-cCCCCC-cc----EEEeecc
Q 013460 161 SRNSLTQSIGDIFGNLAGLATLDLSFNNFSGD-LPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LT----TLNVANN 233 (442)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~----~L~ls~N 233 (442)
++|++.+..+..+..+++|++|++++|.+++. +|..+..+++|++|+|++|++++..+ .+..+. |+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999987776789999999999999999863 68999999999999999999988653 343333 33 7888888
Q ss_pred cCcccCChhcc--ccccccccCCcCCC
Q 013460 234 HFSGWIPRELI--SIRTFIYDGNSFDN 258 (442)
Q Consensus 234 ~l~~~~p~~~~--~l~~l~~~~n~~~~ 258 (442)
.+++..+..+. +++.|++++|.+..
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLKS 214 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCSC
T ss_pred cccccCccccCCCcccEEECCCCceee
Confidence 88866554433 57788888888763
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=5.3e-21 Score=190.79 Aligned_cols=182 Identities=19% Similarity=0.226 Sum_probs=100.6
Q ss_pred CCccEEecC-----------CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCc
Q 013460 74 SWKGVACEG-----------SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNN 140 (442)
Q Consensus 74 ~w~gv~c~~-----------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~ 140 (442)
.|..|.|.. .+++.|+|++|++.+..+..|.++++|++|+|++|.+++..+..+. ++|++|+|++|.
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 456677753 3466777777777776667777777777777777777655555444 666666666666
Q ss_pred CCCCccccccCCCCCCEEEcccCcCCCchhh-------------------------hhcCCCCCcEEeCCCCCCCCCCch
Q 013460 141 FSGNLPYSIASMVSLSYLNVSRNSLTQSIGD-------------------------IFGNLAGLATLDLSFNNFSGDLPN 195 (442)
Q Consensus 141 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-------------------------~~~~l~~L~~L~Ls~N~l~~~~p~ 195 (442)
++...+..|..+++|++|+|++|+++...+. .|.++++|++|+|++|+++ .+|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-
Confidence 6655455566666666666666665543332 3444455555555555544 233
Q ss_pred hccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCcccCChh---ccccccccccCCcCC
Q 013460 196 SFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSGWIPRE---LISIRTFIYDGNSFD 257 (442)
Q Consensus 196 ~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~~~p~~---~~~l~~l~~~~n~~~ 257 (442)
.+..+++|+.|+|++|++++..+ .+..++ |+.|+|++|.+++..+.. +.+|+.|++++|.+.
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 24445555555555555554432 344444 555555555544443322 223344444444443
No 19
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=1.4e-21 Score=185.41 Aligned_cols=189 Identities=21% Similarity=0.284 Sum_probs=149.7
Q ss_pred CCCCCCCccEEecC-----------CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCC--CCCCcc--CCCcE
Q 013460 69 DPCGESWKGVACEG-----------SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDT--IPYQLP--PNLTS 133 (442)
Q Consensus 69 ~~c~~~w~gv~c~~-----------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~~~--~~L~~ 133 (442)
++|.|.|.+|.|.. .++++|+|++|++....+..|..+++|++|+|++|.++.. .+..+. ++|++
T Consensus 3 ~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82 (306)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred CCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence 35656899999974 3689999999999976666789999999999999999843 232222 88999
Q ss_pred EEccCCcCCCCccccccCCCCCCEEEcccCcCCCchh-hhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCc
Q 013460 134 LNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIG-DIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQ 212 (442)
Q Consensus 134 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 212 (442)
|+|++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 999999888 567778888889999999888886654 567888888888888888887778888888888888888888
Q ss_pred CCc--cCccCCCCC-ccEEEeecccCcccCChhc---cccccccccCCcCCC
Q 013460 213 VTG--SLNVFSGLP-LTTLNVANNHFSGWIPREL---ISIRTFIYDGNSFDN 258 (442)
Q Consensus 213 l~~--~~~~~~~l~-L~~L~ls~N~l~~~~p~~~---~~l~~l~~~~n~~~~ 258 (442)
+++ .+..+..++ |+.|++++|.+++..|..+ .+++.|++++|.+..
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 876 334667776 8888888888887766544 456777888888764
No 20
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=1.7e-20 Score=174.77 Aligned_cols=172 Identities=24% Similarity=0.306 Sum_probs=116.0
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNV 160 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (442)
.+++.|++++|.+... ..+..+++|++|+|++|.+.+. + .+. ++|++|+|++|.+++..+..+..+++|++|+|
T Consensus 41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI-S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 5677777777776532 2466677777777777777653 2 222 67777777777777666666677777777777
Q ss_pred ccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCccc
Q 013460 161 SRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSGW 238 (442)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~~ 238 (442)
++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|++++.++ .+..++ |+.|++++|.+++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 7777776666666777777777777777776655566777777777777777776554 345565 77777777777766
Q ss_pred CChh---ccccccccccCCcCCC
Q 013460 239 IPRE---LISIRTFIYDGNSFDN 258 (442)
Q Consensus 239 ~p~~---~~~l~~l~~~~n~~~~ 258 (442)
.+.. +.+++.|++.+|++.|
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CHHHHhCCcCCCEEEccCCCccc
Confidence 5543 3456666777777654
No 21
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=5.4e-21 Score=178.55 Aligned_cols=179 Identities=21% Similarity=0.202 Sum_probs=156.6
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
..+++.|+|++|.+.+..+..+..+++|++|+|++|.+++..+..+. ++|++|++++|.+++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 36899999999999988888999999999999999999988777776 8999999999999987777899999999999
Q ss_pred cccCcCCCc-hhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCC----EEEcccCcCCccCccCCCC-CccEEEeecc
Q 013460 160 VSRNSLTQS-IGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNIS----SLYLQNNQVTGSLNVFSGL-PLTTLNVANN 233 (442)
Q Consensus 160 L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~~~~~~l-~L~~L~ls~N 233 (442)
+++|++++. +|..+..+++|++|+|++|++++..+..+..+.+|+ .|++++|.+++..+..... .|+.|++++|
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n 210 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN 210 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS
T ss_pred CcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC
Confidence 999999874 588999999999999999999987777777766666 8999999999877644444 5999999999
Q ss_pred cCcccCChh---ccccccccccCCcCCCCC
Q 013460 234 HFSGWIPRE---LISIRTFIYDGNSFDNGP 260 (442)
Q Consensus 234 ~l~~~~p~~---~~~l~~l~~~~n~~~~~~ 260 (442)
.+++..+.. +.+++.|++++|++.|.+
T Consensus 211 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 211 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ceeecCHhHhcccccccEEEccCCcccccC
Confidence 999766643 567888999999998753
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=4e-21 Score=182.21 Aligned_cols=175 Identities=23% Similarity=0.267 Sum_probs=99.9
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCC-CCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIP-YQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
.+++.|+|++|.+.. +|..+..+++|++|++++|.+++..+ ..+. ++|++|++++|.+++..+..+..+++|++|+
T Consensus 78 ~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 78 TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp SCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred cccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 345555555555542 33445555666666666665554433 2222 5666666666666655555566666666666
Q ss_pred cccCcCCC-chhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCc
Q 013460 160 VSRNSLTQ-SIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFS 236 (442)
Q Consensus 160 L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~ 236 (442)
|++|.+++ ..|..+..+++|++|+|++|.+++..|..+..+++|+.|+|++|++++..+ .+..++ |+.|++++|.++
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 66666654 355556666666666666666665555566666666666666666665443 344555 666666666666
Q ss_pred ccCChhc----cccccccccCCcCCC
Q 013460 237 GWIPREL----ISIRTFIYDGNSFDN 258 (442)
Q Consensus 237 ~~~p~~~----~~l~~l~~~~n~~~~ 258 (442)
+..|..+ .+++.|++++|++.|
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ccCHHHHHhhhccCCEEEccCCCeec
Confidence 5555432 244556666666654
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=2.4e-20 Score=173.83 Aligned_cols=170 Identities=25% Similarity=0.313 Sum_probs=151.6
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
..+|+.|+|++|.+.+. ..+..+++|++|+|++|.+++..+..+. ++|++|+|++|.+++..+..+..+++|++|+
T Consensus 62 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp CTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 47899999999999874 4789999999999999999987776655 9999999999999988888899999999999
Q ss_pred cccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCcc
Q 013460 160 VSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSG 237 (442)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~ 237 (442)
|++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|++++.++ .+..++ |+.|++++|.+.+
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 99999998888888999999999999999998877788999999999999999999776 467787 9999999999987
Q ss_pred cCChhccccccccccCCcCC
Q 013460 238 WIPRELISIRTFIYDGNSFD 257 (442)
Q Consensus 238 ~~p~~~~~l~~l~~~~n~~~ 257 (442)
..| +++.+++..|.+.
T Consensus 220 ~~~----~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 220 TCP----GIRYLSEWINKHS 235 (272)
T ss_dssp CTT----TTHHHHHHHHHTG
T ss_pred cCc----HHHHHHHHHHhCC
Confidence 755 5677777777775
No 24
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=8.2e-21 Score=180.64 Aligned_cols=176 Identities=18% Similarity=0.162 Sum_probs=143.7
Q ss_pred CCcEEEEEeCCCCCCcccchhc--cCCCCCCEEEccCCCCCCCCCCCcc-------CCCcEEEccCCcCCCCccccccCC
Q 013460 82 GSAVVSIDISGLGLSGTMGYLL--SDLLSLRKFDLSGNSIHDTIPYQLP-------PNLTSLNLASNNFSGNLPYSIASM 152 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p~~~~-------~~L~~L~Ls~n~l~~~~p~~~~~l 152 (442)
..++++|+|++|.+++.+|..+ ..+++|++|+|++|.+++. |..+. ++|++|+|++|.+++..|..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 3689999999999998888876 8899999999999999876 65443 789999999999998888899999
Q ss_pred CCCCEEEcccCcCCCc--hhhhh--cCCCCCcEEeCCCCCCCC--CCc-hhccCCCCCCEEEcccCcCCccCc--cCCCC
Q 013460 153 VSLSYLNVSRNSLTQS--IGDIF--GNLAGLATLDLSFNNFSG--DLP-NSFISLSNISSLYLQNNQVTGSLN--VFSGL 223 (442)
Q Consensus 153 ~~L~~L~L~~n~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~l 223 (442)
++|++|+|++|++.+. .+..+ ..+++|++|+|++|++++ .++ ..+..+++|++|+|++|++++.++ .+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 9999999999998765 34445 788999999999999983 222 334678899999999999988663 45556
Q ss_pred C-ccEEEeecccCcccCChhc-cccccccccCCcCCCC
Q 013460 224 P-LTTLNVANNHFSGWIPREL-ISIRTFIYDGNSFDNG 259 (442)
Q Consensus 224 ~-L~~L~ls~N~l~~~~p~~~-~~l~~l~~~~n~~~~~ 259 (442)
+ |++|+|++|.|+ .+|..+ .+++.|++++|.+...
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLDRN 289 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCCSEEEEEECCSSCCCSC
T ss_pred CCCCEEECCCCccC-hhhhhccCCceEEECCCCCCCCC
Confidence 6 999999999998 666655 4788899999988754
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=8.4e-21 Score=183.73 Aligned_cols=177 Identities=18% Similarity=0.192 Sum_probs=152.2
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNV 160 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (442)
.+++.|++++|++++..+..+..+++|++|+|++|.+++..+..+. ++|++|+|++|.+++..+..+.++++|++|+|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 3799999999999988777999999999999999999988777776 89999999999999766666899999999999
Q ss_pred ccCcCCCchh-hhhcCCCCCcEEeCCCCC-CCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCc
Q 013460 161 SRNSLTQSIG-DIFGNLAGLATLDLSFNN-FSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFS 236 (442)
Q Consensus 161 ~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~ 236 (442)
++|+++...+ ..+..+++|++|++++|+ +.+..+..+..+++|++|++++|.+++..+ .+..++ |++|++++|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9999986544 478899999999999994 776667889999999999999999998754 688888 999999999986
Q ss_pred ccCCh---hccccccccccCCcCCCC
Q 013460 237 GWIPR---ELISIRTFIYDGNSFDNG 259 (442)
Q Consensus 237 ~~~p~---~~~~l~~l~~~~n~~~~~ 259 (442)
..... .+.+++.|++++|.+...
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred cchhhhhhhcccccEEECCCCccccc
Confidence 43322 357889999999998753
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=4.1e-20 Score=185.00 Aligned_cols=105 Identities=19% Similarity=0.328 Sum_probs=68.8
Q ss_pred CCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEee
Q 013460 154 SLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVA 231 (442)
Q Consensus 154 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls 231 (442)
+|++|++++|++++..|..+..+++|++|+|++|++++..|..|..+++|++|+|++|.+++..+ .+..++ |+.|+|+
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 45555555556665566667777777777777777776666667777777777777777766544 455565 7777777
Q ss_pred cccCcccCChhc---cccccccccCCcCCC
Q 013460 232 NNHFSGWIPREL---ISIRTFIYDGNSFDN 258 (442)
Q Consensus 232 ~N~l~~~~p~~~---~~l~~l~~~~n~~~~ 258 (442)
+|.+++..|..+ .+|+.|++++|.+..
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcccccChhhccccccccEEECCCCcccc
Confidence 777766655433 445666677776653
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=3.9e-20 Score=199.12 Aligned_cols=89 Identities=22% Similarity=0.236 Sum_probs=67.7
Q ss_pred hcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCCccEEEeecccCcccCChhcccccccccc
Q 013460 173 FGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLPLTTLNVANNHFSGWIPRELISIRTFIYD 252 (442)
Q Consensus 173 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~L~~L~ls~N~l~~~~p~~~~~l~~l~~~ 252 (442)
|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++.++....-.|+.|+|++|.+++.+|..+.+++.+++.
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~ 555 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDIT 555 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEE
T ss_pred hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEec
Confidence 34455666666666666666666677888888888888888876654333338899999999999989888899999999
Q ss_pred CCcCCCCCC
Q 013460 253 GNSFDNGPA 261 (442)
Q Consensus 253 ~n~~~~~~~ 261 (442)
+|++.|.+.
T Consensus 556 ~Np~~C~c~ 564 (844)
T 3j0a_A 556 HNKFICECE 564 (844)
T ss_dssp EECCCCSSS
T ss_pred CCCcccccc
Confidence 999998653
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=187.38 Aligned_cols=167 Identities=19% Similarity=0.225 Sum_probs=129.8
Q ss_pred CCccEEecC-----------CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCc
Q 013460 74 SWKGVACEG-----------SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNN 140 (442)
Q Consensus 74 ~w~gv~c~~-----------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~ 140 (442)
.|..|.|.. .+++.|+|++|++++..+..|.++++|++|+|++|.+++..|..+. ++|++|+|++|.
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 467777763 3578889999998888888888888999999999988887777776 888888888888
Q ss_pred CCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-c
Q 013460 141 FSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-V 219 (442)
Q Consensus 141 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~ 219 (442)
++...+..|.++++|++|+|++|++.+..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++..+ .
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 886666667888888888888888887777778888888888888888887777777788888888888887776554 3
Q ss_pred CCCCC-ccEEEeecccCcccCC
Q 013460 220 FSGLP-LTTLNVANNHFSGWIP 240 (442)
Q Consensus 220 ~~~l~-L~~L~ls~N~l~~~~p 240 (442)
+..++ |+.|++++|.+.+..+
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECT
T ss_pred hcccCCCcEEeCCCCcCcEeCh
Confidence 55555 6666666666655443
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=5.9e-20 Score=183.86 Aligned_cols=156 Identities=20% Similarity=0.194 Sum_probs=133.9
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCC-CCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIP-YQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
.++++|+|++|.+++..|..+.++++|++|+|++|.+.+.++ ..+. ++|++|+|++|.+++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 468999999999999999999999999999999999986664 4454 9999999999999988899999999999999
Q ss_pred cccCcCCCchhhh--hcCCCCCcEEeCCCCCCCCCCchh-ccCCCCCCEEEcccCcCCccCc-cCCCC---CccEEEeec
Q 013460 160 VSRNSLTQSIGDI--FGNLAGLATLDLSFNNFSGDLPNS-FISLSNISSLYLQNNQVTGSLN-VFSGL---PLTTLNVAN 232 (442)
Q Consensus 160 L~~n~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~~-~~~~l---~L~~L~ls~ 232 (442)
|++|++++..+.. +..+++|++|+|++|++++..|.. +..+++|++|++++|.+++..+ .+..+ .|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999999877666 899999999999999999887876 8899999999999999988664 34333 255566666
Q ss_pred ccCccc
Q 013460 233 NHFSGW 238 (442)
Q Consensus 233 N~l~~~ 238 (442)
|.+.+.
T Consensus 190 n~l~~~ 195 (455)
T 3v47_A 190 ITLQDM 195 (455)
T ss_dssp CBCTTC
T ss_pred Cccccc
Confidence 655543
No 30
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=3.7e-20 Score=176.14 Aligned_cols=174 Identities=20% Similarity=0.254 Sum_probs=146.1
Q ss_pred CCcEEEEEeCCCCCCcccchhccCC-----CCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCC--ccccc--c
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDL-----LSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGN--LPYSI--A 150 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~--~p~~~--~ 150 (442)
..+++.|+|++|.+++. |..+..+ ++|++|+|++|++.+..|..+. ++|++|+|++|.+.+. .+..+ .
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 47899999999999988 7878777 8999999999999988877776 9999999999998865 34455 8
Q ss_pred CCCCCCEEEcccCcCCC---chhhhhcCCCCCcEEeCCCCCCCCCCc-hhccCCCCCCEEEcccCcCCccCccCCCCCcc
Q 013460 151 SMVSLSYLNVSRNSLTQ---SIGDIFGNLAGLATLDLSFNNFSGDLP-NSFISLSNISSLYLQNNQVTGSLNVFSGLPLT 226 (442)
Q Consensus 151 ~l~~L~~L~L~~n~l~~---~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~L~ 226 (442)
.+++|++|+|++|++++ .....+..+++|++|+|++|++++.+| ..+..+++|++|+|++|+++..+..+. -.|+
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~ 277 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLS 277 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEE
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CCce
Confidence 89999999999999984 222445788999999999999998775 456678999999999999995554454 3399
Q ss_pred EEEeecccCcccCCh--hccccccccccCCcCCC
Q 013460 227 TLNVANNHFSGWIPR--ELISIRTFIYDGNSFDN 258 (442)
Q Consensus 227 ~L~ls~N~l~~~~p~--~~~~l~~l~~~~n~~~~ 258 (442)
+|+|++|.|++. |. .+.+++.|++++|++..
T Consensus 278 ~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 278 VLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTC
T ss_pred EEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCC
Confidence 999999999976 43 45677889999999863
No 31
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=3.4e-20 Score=169.36 Aligned_cols=174 Identities=16% Similarity=0.187 Sum_probs=149.1
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCC-CCCCCCCCcc--CCCcEEEccC-CcCCCCccccccCCCCCCEE
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNS-IHDTIPYQLP--PNLTSLNLAS-NNFSGNLPYSIASMVSLSYL 158 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~--~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L 158 (442)
.+++.|+|++|++++..+..+..+++|++|++++|. ++...+..+. ++|++|++++ |.+++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 579999999999998888899999999999999997 8866666665 8999999999 99997777889999999999
Q ss_pred EcccCcCCCchhhhhcCCCCCc---EEeCCCC-CCCCCCchhccCCCCCC-EEEcccCcCCccCc-cCCCCCccEEEeec
Q 013460 159 NVSRNSLTQSIGDIFGNLAGLA---TLDLSFN-NFSGDLPNSFISLSNIS-SLYLQNNQVTGSLN-VFSGLPLTTLNVAN 232 (442)
Q Consensus 159 ~L~~n~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~~-~~~~l~L~~L~ls~ 232 (442)
++++|++++ +|. +..+++|+ +|++++| ++++..+..|..+++|+ .|++++|+++...+ .+....|+.|++++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence 999999997 565 88889998 9999999 99976667799999999 99999999996554 34442399999999
Q ss_pred cc-CcccCChh---c-cccccccccCCcCCC
Q 013460 233 NH-FSGWIPRE---L-ISIRTFIYDGNSFDN 258 (442)
Q Consensus 233 N~-l~~~~p~~---~-~~l~~l~~~~n~~~~ 258 (442)
|. +++..+.. + .+++.|++++|.+..
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 95 88665544 3 577889999999874
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=2.9e-19 Score=171.21 Aligned_cols=186 Identities=19% Similarity=0.253 Sum_probs=148.3
Q ss_pred CCCCCCCccEEecC-----------CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEE
Q 013460 69 DPCGESWKGVACEG-----------SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLN 135 (442)
Q Consensus 69 ~~c~~~w~gv~c~~-----------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~ 135 (442)
..|.+.|+.+.|.. ..++.|+|++|++++..+..+.++++|++|+|++|.+++..|..+. ++|++|+
T Consensus 27 ~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 34545788888863 3688999999999988888999999999999999999988888777 8999999
Q ss_pred ccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCC--CCchhccCCCCCCEEEcccCcC
Q 013460 136 LASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSG--DLPNSFISLSNISSLYLQNNQV 213 (442)
Q Consensus 136 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l 213 (442)
|++|.++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 9999998 5665554 789999999999998888888889999999999998863 5677788888888888888888
Q ss_pred CccCccCCCCCccEEEeecccCcccCChhc---cccccccccCCcCCC
Q 013460 214 TGSLNVFSGLPLTTLNVANNHFSGWIPREL---ISIRTFIYDGNSFDN 258 (442)
Q Consensus 214 ~~~~~~~~~l~L~~L~ls~N~l~~~~p~~~---~~l~~l~~~~n~~~~ 258 (442)
+..+..+. -.|+.|++++|.+++..|..+ .+++.|++++|.+..
T Consensus 184 ~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 184 TTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp CSCCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred ccCCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 76543332 227888888888777666543 456667777777653
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=5.7e-20 Score=188.39 Aligned_cols=175 Identities=18% Similarity=0.186 Sum_probs=151.8
Q ss_pred cEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 84 AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
+++.|+|++|.+++..|..|..+++|++|+|++|.+++..|..+. ++|++|+|++|.+++..|..+.++++|++|+|+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 799999999999998899999999999999999999988887776 899999999999998888889999999999999
Q ss_pred cCcCCC-chhhhhcCCCCCcEEeCCCCCCCCCCc-hhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCcc
Q 013460 162 RNSLTQ-SIGDIFGNLAGLATLDLSFNNFSGDLP-NSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSG 237 (442)
Q Consensus 162 ~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~ 237 (442)
+|++++ ..|..+.++++|++|++++|.+.+.+| ..+..+++|++|++++|.+++.++ .+..++ |+.|++++|.+..
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 186 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc
Confidence 999986 356778999999999999999555555 679999999999999999998665 677777 9999999998753
Q ss_pred cCCh----hccccccccccCCcCCCC
Q 013460 238 WIPR----ELISIRTFIYDGNSFDNG 259 (442)
Q Consensus 238 ~~p~----~~~~l~~l~~~~n~~~~~ 259 (442)
+|. .+.+++.|++++|.+...
T Consensus 187 -~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 187 -LLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp -HHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred -cchhhHhhcccccEEEccCCccccc
Confidence 333 357888899999988754
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=9e-20 Score=188.87 Aligned_cols=132 Identities=20% Similarity=0.251 Sum_probs=86.5
Q ss_pred cEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 84 AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
+++.|++++|.+....+..+..+++|++|+|++|.+++..|..+. ++|++|+|++|.+++..|..|+++++|++|+|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 456666666666665555666666777777777776665555554 667777777777666666666666677777777
Q ss_pred cCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCc
Q 013460 162 RNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTG 215 (442)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 215 (442)
+|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|.+++
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 776665555555666667777777666666666666666666666666666554
No 35
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.81 E-value=4.3e-20 Score=192.55 Aligned_cols=160 Identities=20% Similarity=0.326 Sum_probs=144.7
Q ss_pred CcccchhccCCCCCCEEEccCCCCCCC-----------------CCCCcc----CCCcEEEccCCcCCCCccccccCCCC
Q 013460 96 SGTMGYLLSDLLSLRKFDLSGNSIHDT-----------------IPYQLP----PNLTSLNLASNNFSGNLPYSIASMVS 154 (442)
Q Consensus 96 ~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~~~----~~L~~L~Ls~n~l~~~~p~~~~~l~~ 154 (442)
++ +|..++++++|++|+|++|.+++. +|..+. ++|++|+|++|.+.+.+|..+.++++
T Consensus 196 ~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp EE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred cc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 35 788999999999999999999985 887765 89999999999999999999999999
Q ss_pred CCEEEcccCc-CCC-chhhhhcCC------CCCcEEeCCCCCCCCCCch--hccCCCCCCEEEcccCcCCccCccCCCCC
Q 013460 155 LSYLNVSRNS-LTQ-SIGDIFGNL------AGLATLDLSFNNFSGDLPN--SFISLSNISSLYLQNNQVTGSLNVFSGLP 224 (442)
Q Consensus 155 L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 224 (442)
|++|+|++|+ +++ .+|..++.+ ++|++|+|++|+++ .+|. .+..+++|++|++++|+++|.+|.+..++
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~ 353 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEI 353 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCC
Confidence 9999999999 998 899988887 99999999999999 8898 99999999999999999998777777777
Q ss_pred -ccEEEeecccCcccCChhc---cc-cccccccCCcCCC
Q 013460 225 -LTTLNVANNHFSGWIPREL---IS-IRTFIYDGNSFDN 258 (442)
Q Consensus 225 -L~~L~ls~N~l~~~~p~~~---~~-l~~l~~~~n~~~~ 258 (442)
|+.|++++|.++ .+|..+ .+ ++.|++++|.+..
T Consensus 354 ~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~ 391 (636)
T 4eco_A 354 KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY 391 (636)
T ss_dssp EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS
T ss_pred CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc
Confidence 999999999998 677654 45 7788899999873
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=9.3e-20 Score=189.12 Aligned_cols=175 Identities=22% Similarity=0.204 Sum_probs=154.4
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNV 160 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (442)
.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+. ++|++|+|++|.+++..|..|.++++|++|+|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 4789999999999999998999999999999999999988888776 99999999999999888999999999999999
Q ss_pred ccCcCCCchhhhhcCCCCCcEEeCCCCCCCC-CCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-----ccEEEeecc
Q 013460 161 SRNSLTQSIGDIFGNLAGLATLDLSFNNFSG-DLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-----LTTLNVANN 233 (442)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-----L~~L~ls~N 233 (442)
++|++++..+..++++++|++|+|++|.+++ .+|..+.++++|++|++++|++++..+ .+..+. +..|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 9999998877889999999999999999986 679999999999999999999998654 344443 458999999
Q ss_pred cCcccCChhcc--ccccccccCCcCC
Q 013460 234 HFSGWIPRELI--SIRTFIYDGNSFD 257 (442)
Q Consensus 234 ~l~~~~p~~~~--~l~~l~~~~n~~~ 257 (442)
.+++..+..+. +++.|++++|.+.
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNS 217 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSC
T ss_pred CcceeCcccccCceeeeeeccCCccc
Confidence 99876655443 5778888888764
No 37
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=6e-20 Score=174.48 Aligned_cols=175 Identities=18% Similarity=0.191 Sum_probs=140.6
Q ss_pred CcEEEEEeCCCCCCcccchhc--cCCCCCCEEEccCCCCCCCCCC------CccCCCcEEEccCCcCCCCccccccCCCC
Q 013460 83 SAVVSIDISGLGLSGTMGYLL--SDLLSLRKFDLSGNSIHDTIPY------QLPPNLTSLNLASNNFSGNLPYSIASMVS 154 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p~------~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 154 (442)
.++++|+|++|.+.+..|..+ ..+++|++|+|++|.+++..+. ...++|++|+|++|.+++..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 469999999999999988888 8999999999999999875552 11279999999999999888889999999
Q ss_pred CCEEEcccCcCCCc--hh--hhhcCCCCCcEEeCCCCCCCCCCch----hccCCCCCCEEEcccCcCCccC-ccCCCC--
Q 013460 155 LSYLNVSRNSLTQS--IG--DIFGNLAGLATLDLSFNNFSGDLPN----SFISLSNISSLYLQNNQVTGSL-NVFSGL-- 223 (442)
Q Consensus 155 L~~L~L~~n~l~~~--~p--~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~~-~~~~~l-- 223 (442)
|++|+|++|++.+. ++ ..+..+++|++|+|++|+++ .++. .+..+++|++|+|++|++++.. +.+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 99999999998753 22 22367889999999999997 3443 2567899999999999998874 344444
Q ss_pred -C-ccEEEeecccCcccCChh-ccccccccccCCcCCCC
Q 013460 224 -P-LTTLNVANNHFSGWIPRE-LISIRTFIYDGNSFDNG 259 (442)
Q Consensus 224 -~-L~~L~ls~N~l~~~~p~~-~~~l~~l~~~~n~~~~~ 259 (442)
+ |++|+|++|.|+ .+|.. +.+++.|++++|.+...
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNRA 287 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCCSC
T ss_pred cCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCCCC
Confidence 4 999999999998 45543 46788999999998754
No 38
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=6.2e-19 Score=164.03 Aligned_cols=158 Identities=22% Similarity=0.267 Sum_probs=142.3
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
..+|++|+|++|.++...+..|..+++|++|+|++|.+++..+..+. ++|++|+|++|.+++..+..|..+++|++|+
T Consensus 60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 37899999999999987777889999999999999999976665555 8999999999999988888899999999999
Q ss_pred cccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCcc
Q 013460 160 VSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSG 237 (442)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~ 237 (442)
|++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++.++ .+..++ |+.|+|++|.+..
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 99999998777779999999999999999998777789999999999999999998766 477777 9999999999876
Q ss_pred cC
Q 013460 238 WI 239 (442)
Q Consensus 238 ~~ 239 (442)
..
T Consensus 220 ~c 221 (270)
T 2o6q_A 220 TC 221 (270)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 39
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=3.2e-19 Score=161.79 Aligned_cols=157 Identities=24% Similarity=0.289 Sum_probs=128.7
Q ss_pred CCCCCCCCccEEecCCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCc
Q 013460 68 GDPCGESWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNL 145 (442)
Q Consensus 68 ~~~c~~~w~gv~c~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~ 145 (442)
...| +|.+|.|...+ +. .+|..+. ++|++|+|++|.|++..|..+. ++|++|+|++|.++...
T Consensus 16 ~~~C--s~~~v~c~~~~----------l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~ 80 (229)
T 3e6j_A 16 QCSC--SGTTVDCRSKR----------HA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP 80 (229)
T ss_dssp TCEE--ETTEEECTTSC----------CS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCEE--eCCEeEccCCC----------cC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC
Confidence 4455 79988886543 32 3343332 7899999999999988787765 89999999999998666
Q ss_pred cccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC
Q 013460 146 PYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP 224 (442)
Q Consensus 146 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~ 224 (442)
+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|++++..+ .+..++
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence 667789999999999999999877777889999999999999999 788889999999999999999998765 577777
Q ss_pred -ccEEEeecccCcccCC
Q 013460 225 -LTTLNVANNHFSGWIP 240 (442)
Q Consensus 225 -L~~L~ls~N~l~~~~p 240 (442)
|+.|+|++|.+.+..+
T Consensus 160 ~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 160 SLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TCCEEECTTSCBCTTBG
T ss_pred CCCEEEeeCCCccCCcc
Confidence 9999999999986654
No 40
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=6.8e-19 Score=158.62 Aligned_cols=151 Identities=24% Similarity=0.270 Sum_probs=126.7
Q ss_pred EEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCC-cc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccC
Q 013460 87 SIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQ-LP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRN 163 (442)
Q Consensus 87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 163 (442)
.+++++|.++. +|..+. ..+++|+|++|.|++..+.. +. ++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 67778888875 455443 45789999999999876643 33 89999999999999877778999999999999999
Q ss_pred cCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCcccCC
Q 013460 164 SLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSGWIP 240 (442)
Q Consensus 164 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~~~p 240 (442)
++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+ .+..++ |+.|+|++|.+.+..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9998888889999999999999999998888889999999999999999998755 677777 9999999998886544
No 41
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=6.9e-20 Score=165.13 Aligned_cols=149 Identities=21% Similarity=0.254 Sum_probs=133.6
Q ss_pred CCCCCCCccEEecC-----------CcEEEEEeCCCCCCcccc-hhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEE
Q 013460 69 DPCGESWKGVACEG-----------SAVVSIDISGLGLSGTMG-YLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSL 134 (442)
Q Consensus 69 ~~c~~~w~gv~c~~-----------~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L 134 (442)
..|.+.|..+.|.. ..++.|+|++|++++..+ ..|..+++|++|+|++|.|++..+..+. ++|++|
T Consensus 7 ~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 7 EKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence 34555788888864 257899999999998855 5689999999999999999988776776 999999
Q ss_pred EccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCC
Q 013460 135 NLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVT 214 (442)
Q Consensus 135 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 214 (442)
+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|.+.
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99999999888888999999999999999999998999999999999999999999888999999999999999999998
Q ss_pred ccC
Q 013460 215 GSL 217 (442)
Q Consensus 215 ~~~ 217 (442)
...
T Consensus 167 c~c 169 (220)
T 2v70_A 167 CNC 169 (220)
T ss_dssp CSG
T ss_pred CCC
Confidence 643
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=1.5e-19 Score=187.64 Aligned_cols=175 Identities=24% Similarity=0.227 Sum_probs=105.0
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCC-cc--CCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQ-LP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
.+++.|++++|.+.+..|..+..+++|++|++++|.+.+..+.. +. ++|++|++++|.+++..|..+..+++|++|+
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE
Confidence 45555666666655555555666666666666666665544433 22 5666666666666655566666666666666
Q ss_pred cccCcCCCc---hhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeeccc
Q 013460 160 VSRNSLTQS---IGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNH 234 (442)
Q Consensus 160 L~~n~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~ 234 (442)
+++|++++. .+..+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++.++ .+..++ | .|++++|.
T Consensus 456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred CCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 666666542 12345566666666666666666556666666666666666666666543 455555 6 66666666
Q ss_pred CcccCChh---ccccccccccCCcCCC
Q 013460 235 FSGWIPRE---LISIRTFIYDGNSFDN 258 (442)
Q Consensus 235 l~~~~p~~---~~~l~~l~~~~n~~~~ 258 (442)
+++..|.. +.+++.+++.+|++.|
T Consensus 535 l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 535 ISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred ccccCHhhcccCCCCCEEeCCCCCccc
Confidence 66655543 3445666666666665
No 43
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=2.2e-19 Score=161.78 Aligned_cols=147 Identities=26% Similarity=0.337 Sum_probs=123.9
Q ss_pred EEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcC
Q 013460 88 IDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSL 165 (442)
Q Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 165 (442)
+++++++++. +|..+. ++|+.|+|++|.|++..+..+. ++|++|+|++|.+++..|..|.++++|++|+|++|+|
T Consensus 16 v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 4455566653 344343 6899999999999977766665 8999999999999988889999999999999999999
Q ss_pred CCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCcc
Q 013460 166 TQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSG 237 (442)
Q Consensus 166 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~ 237 (442)
+...+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+ .+..++ |+.|+|++|.+..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 97777778899999999999999998888899999999999999999998776 577777 9999999999874
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=7.5e-20 Score=189.82 Aligned_cols=174 Identities=25% Similarity=0.269 Sum_probs=97.6
Q ss_pred CcEEEEEeCCCCCCcc--cchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCcc-ccccCCCCCCE
Q 013460 83 SAVVSIDISGLGLSGT--MGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLP-YSIASMVSLSY 157 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~ 157 (442)
.+++.|++++|.+++. ++..+..+++|++|++++|.+.+ +|..+. ++|++|++++|.+++..| ..+..+++|++
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 5677777777776654 35566666666666666666553 333333 556666666666555544 45555556666
Q ss_pred EEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCC-CCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeeccc
Q 013460 158 LNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSG-DLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNH 234 (442)
Q Consensus 158 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~ 234 (442)
|++++|++.+..|..+..+++|++|++++|.+++ .+|..+..+++|+.|+|++|++++.++ .+..++ |+.|++++|.
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 6666665555555555555555555555555554 245555555555555555555555443 344444 5555555555
Q ss_pred CcccCChhc---cccccccccCCcCC
Q 013460 235 FSGWIPREL---ISIRTFIYDGNSFD 257 (442)
Q Consensus 235 l~~~~p~~~---~~l~~l~~~~n~~~ 257 (442)
+++.+|..+ .+++.|++++|.+.
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCcCHHHccCCCcCCEEECCCCcCc
Confidence 555544433 23445555555554
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=4.6e-19 Score=169.80 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=72.1
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCC--CccccccCCCCCCE-
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSG--NLPYSIASMVSLSY- 157 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~- 157 (442)
.++++|+|++|.++. +|..+. ++|++|++++|.+++..+..+. ++|++|++++|.++. ..+..+.++++|++
T Consensus 100 ~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 100 VKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp TTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 456666666665552 222221 4455555555555433332222 445555555554432 33444444444444
Q ss_pred --------------------EEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccC
Q 013460 158 --------------------LNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSL 217 (442)
Q Consensus 158 --------------------L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 217 (442)
|++++|++++..|..+..+++|++|+|++|.+++..+..+..+++|+.|+|++|+++..+
T Consensus 177 ~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp 256 (330)
T 1xku_A 177 RIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 256 (330)
T ss_dssp ECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC
T ss_pred ECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCC
Confidence 455555444444444445555555555555554444444444555555555555554333
Q ss_pred ccCCCCC-ccEEEeecccCccc
Q 013460 218 NVFSGLP-LTTLNVANNHFSGW 238 (442)
Q Consensus 218 ~~~~~l~-L~~L~ls~N~l~~~ 238 (442)
..+..++ |++|++++|.+++.
T Consensus 257 ~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 257 GGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp TTTTTCSSCCEEECCSSCCCCC
T ss_pred hhhccCCCcCEEECCCCcCCcc
Confidence 3344444 55555555555443
No 46
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=3.3e-19 Score=173.06 Aligned_cols=171 Identities=23% Similarity=0.239 Sum_probs=138.6
Q ss_pred EEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCc--c-CCCcEEEccCCcCCCCccccccCCCCCCEEEcccC
Q 013460 87 SIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQL--P-PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRN 163 (442)
Q Consensus 87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~--~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 163 (442)
.++++++++.. +|..+. ..++.|+|++|.|++..+..+ . ++|++|+|++|.|++..+..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 56777787775 454443 458899999999997777665 2 88999999999999777788999999999999999
Q ss_pred cCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCcc-C---CCCC-ccEEEeecccCccc
Q 013460 164 SLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNV-F---SGLP-LTTLNVANNHFSGW 238 (442)
Q Consensus 164 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~-~---~~l~-L~~L~ls~N~l~~~ 238 (442)
+|+...+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|++.+.. + ..++ |+.|+|++|.|++.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 99987777889999999999999999987788899999999999999999886653 3 4566 99999999999866
Q ss_pred CChhcccc-----ccccccCCcCCCCC
Q 013460 239 IPRELISI-----RTFIYDGNSFDNGP 260 (442)
Q Consensus 239 ~p~~~~~l-----~~l~~~~n~~~~~~ 260 (442)
.+..+..+ +.|++.+|++.|.+
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred CHHHhhhccHhhcceEEecCCCccCCc
Confidence 55555443 56889999998754
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=2.7e-19 Score=175.53 Aligned_cols=177 Identities=20% Similarity=0.253 Sum_probs=121.6
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNV 160 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (442)
.+++.|+|++|.+.+..|..+..+++|++|+|++|.++...+..+. ++|++|++++|.+++..+..+..+++|++|++
T Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence 4666666666666666666666666666666666666633332222 66666666666666555555666666666666
Q ss_pred ccCcCCCch-----------------------------------------------------------hhhhcCCCCCcE
Q 013460 161 SRNSLTQSI-----------------------------------------------------------GDIFGNLAGLAT 181 (442)
Q Consensus 161 ~~n~l~~~~-----------------------------------------------------------p~~~~~l~~L~~ 181 (442)
++|++++.. ...+..+++|++
T Consensus 173 ~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~ 252 (390)
T 3o6n_A 173 SSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVE 252 (390)
T ss_dssp CSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred CCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccE
Confidence 666554321 123556788888
Q ss_pred EeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccCC--hhccccccccccCCcCCC
Q 013460 182 LDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWIP--RELISIRTFIYDGNSFDN 258 (442)
Q Consensus 182 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~p--~~~~~l~~l~~~~n~~~~ 258 (442)
|+|++|.+++..|..+..+++|+.|+|++|++++....+..++ |+.|++++|.+.+..+ ..+.+++.|++.+|.+..
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred EECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccce
Confidence 9999999988778889999999999999999988666666666 8999999998884332 235677888888888764
Q ss_pred C
Q 013460 259 G 259 (442)
Q Consensus 259 ~ 259 (442)
.
T Consensus 333 ~ 333 (390)
T 3o6n_A 333 L 333 (390)
T ss_dssp C
T ss_pred e
Confidence 3
No 48
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=171.39 Aligned_cols=174 Identities=20% Similarity=0.200 Sum_probs=127.2
Q ss_pred CCcEEEEEeCCCCCCcccc----hhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCC--cc--ccccC
Q 013460 82 GSAVVSIDISGLGLSGTMG----YLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGN--LP--YSIAS 151 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~--~p--~~~~~ 151 (442)
..+++.|+|++|.+.+..+ ..+..+++|++|+|++|.+.+..+..+. ++|++|+|++|.+.+. ++ ..+..
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 4678888888888876544 3445678888888888888777766665 7888888888887642 22 22357
Q ss_pred CCCCCEEEcccCcCCCchhh----hhcCCCCCcEEeCCCCCCCCCCchhccCC---CCCCEEEcccCcCCccCccCCCCC
Q 013460 152 MVSLSYLNVSRNSLTQSIGD----IFGNLAGLATLDLSFNNFSGDLPNSFISL---SNISSLYLQNNQVTGSLNVFSGLP 224 (442)
Q Consensus 152 l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~~~~~~l~ 224 (442)
+++|++|+|++|+++. ++. .+..+++|++|+|++|++++..|..+..+ ++|++|+|++|+++..+..+. -.
T Consensus 196 l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~ 273 (310)
T 4glp_A 196 FPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AK 273 (310)
T ss_dssp SCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SC
T ss_pred CCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc-CC
Confidence 7888888888888863 222 24677888888888888887777777666 588888888888885444342 23
Q ss_pred ccEEEeecccCcc-cCChhccccccccccCCcCC
Q 013460 225 LTTLNVANNHFSG-WIPRELISIRTFIYDGNSFD 257 (442)
Q Consensus 225 L~~L~ls~N~l~~-~~p~~~~~l~~l~~~~n~~~ 257 (442)
|+.|+|++|.+++ ..+..+.+++.|++++|++.
T Consensus 274 L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 274 LRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred CCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence 8888888888887 45667778888888888875
No 49
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=5.6e-19 Score=159.17 Aligned_cols=149 Identities=23% Similarity=0.300 Sum_probs=133.4
Q ss_pred CEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCC
Q 013460 110 RKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNF 189 (442)
Q Consensus 110 ~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 189 (442)
+.++++++.++ .+|..++++|+.|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|+|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCS-SCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcC-cCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 57899999998 57877889999999999999987777899999999999999999998899999999999999999999
Q ss_pred CCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCcccCChh---ccccccccccCCcCCCC
Q 013460 190 SGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSGWIPRE---LISIRTFIYDGNSFDNG 259 (442)
Q Consensus 190 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~~~p~~---~~~l~~l~~~~n~~~~~ 259 (442)
+...+..|..+++|+.|+|++|++++..+ .+..++ |+.|+|++|.|++..+.. +.+++.|++.+|+|.|.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 96666668899999999999999999765 688888 999999999999877754 45678899999999874
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=4.2e-19 Score=170.30 Aligned_cols=183 Identities=17% Similarity=0.261 Sum_probs=132.6
Q ss_pred CCCCCCccEEecC-----------CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEc
Q 013460 70 PCGESWKGVACEG-----------SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNL 136 (442)
Q Consensus 70 ~c~~~w~gv~c~~-----------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~L 136 (442)
.|.+.|..+.|.. .+++.|+|++|.+.+..+..+.++++|++|+|++|.+++..|..+. ++|++|+|
T Consensus 30 ~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 30 GCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp SCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred CCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 3444788888863 3688999999999988888899999999999999999987777776 88999999
Q ss_pred cCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCC--CCCchhccCCCCCCEEEcccCcCC
Q 013460 137 ASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFS--GDLPNSFISLSNISSLYLQNNQVT 214 (442)
Q Consensus 137 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~ 214 (442)
++|.++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.++ +..|..+..+ +|+.|++++|+++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 999988 5565554 78888888888888777777888888888888888885 3556666666 6666777666666
Q ss_pred ccCccCCCCCccEEEeecccCcccCChh---ccccccccccCCcCC
Q 013460 215 GSLNVFSGLPLTTLNVANNHFSGWIPRE---LISIRTFIYDGNSFD 257 (442)
Q Consensus 215 ~~~~~~~~l~L~~L~ls~N~l~~~~p~~---~~~l~~l~~~~n~~~ 257 (442)
+.+..+. -.|+.|++++|.+++..+.. +.+++.|++++|.+.
T Consensus 186 ~l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~ 230 (332)
T 2ft3_A 186 GIPKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230 (332)
T ss_dssp SCCSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC
T ss_pred ccCcccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 5433222 12555666666665544433 234455555555554
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=4.4e-19 Score=186.56 Aligned_cols=161 Identities=23% Similarity=0.280 Sum_probs=144.8
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNV 160 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (442)
.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+. ++|++|+|++|.+++..+..|.++++|++|+|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 5799999999999998888999999999999999999988887776 99999999999999666667999999999999
Q ss_pred ccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCcc-C--CCCC-ccEEEeecccCc
Q 013460 161 SRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNV-F--SGLP-LTTLNVANNHFS 236 (442)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~-~--~~l~-L~~L~ls~N~l~ 236 (442)
++|++++..|..|.++++|++|+|++|.+++..|..+..+++|++|++++|.+++..+. + ..+. |+.|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999988888899999999999999999998899999999999999999999987652 3 2345 999999999999
Q ss_pred ccCChhc
Q 013460 237 GWIPREL 243 (442)
Q Consensus 237 ~~~p~~~ 243 (442)
+..|..+
T Consensus 185 ~~~~~~~ 191 (680)
T 1ziw_A 185 EFSPGCF 191 (680)
T ss_dssp CBCTTGG
T ss_pred ccChhhh
Confidence 8777543
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=6.6e-19 Score=168.90 Aligned_cols=175 Identities=22% Similarity=0.273 Sum_probs=128.9
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
..+++.|+|++|.+++..|..+..+++|++|+|++|.++ .+|..+.++|++|++++|.+++..+..+..+++|++|+++
T Consensus 77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence 468999999999999998999999999999999999998 5676666999999999999997777779999999999999
Q ss_pred cCcCCC--chhhhhcCC--------------------CCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-
Q 013460 162 RNSLTQ--SIGDIFGNL--------------------AGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN- 218 (442)
Q Consensus 162 ~n~l~~--~~p~~~~~l--------------------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~- 218 (442)
+|.++. ..+..+..+ ++|++|++++|.+++..+..+..+++|+.|+|++|++++..+
T Consensus 156 ~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 235 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235 (332)
T ss_dssp SCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT
T ss_pred CCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh
Confidence 999963 555555554 345555555555555555556666666666666666666544
Q ss_pred cCCCCC-ccEEEeecccCcccCChh---ccccccccccCCcCCC
Q 013460 219 VFSGLP-LTTLNVANNHFSGWIPRE---LISIRTFIYDGNSFDN 258 (442)
Q Consensus 219 ~~~~l~-L~~L~ls~N~l~~~~p~~---~~~l~~l~~~~n~~~~ 258 (442)
.+..++ |+.|++++|.++ .+|.. +.+++.|++++|.+..
T Consensus 236 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 236 SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp GGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred HhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence 455555 666666666666 44433 3345556666666653
No 53
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=6.8e-19 Score=167.01 Aligned_cols=167 Identities=18% Similarity=0.327 Sum_probs=136.2
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
..+++.|+|++|.+.+..+ +..+++|++|+|++|.+++. + .+. ++|++|+|++|.+++. +. +..+++|++|+
T Consensus 62 l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLY 135 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEE
Confidence 4789999999999987655 88999999999999998864 3 233 8899999999999864 33 88899999999
Q ss_pred cccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCccc
Q 013460 160 VSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGW 238 (442)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~ 238 (442)
|++|++++..+ +..+++|++|+|++|.+++. +. +..+++|+.|++++|++++..+ +..++ |+.|++++|.+++.
T Consensus 136 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBC
T ss_pred CCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcc
Confidence 99999987644 88899999999999999854 43 8889999999999999987654 66666 99999999999876
Q ss_pred CC-hhccccccccccCCcCCCC
Q 013460 239 IP-RELISIRTFIYDGNSFDNG 259 (442)
Q Consensus 239 ~p-~~~~~l~~l~~~~n~~~~~ 259 (442)
.+ ..+.+++.|++++|++.+.
T Consensus 211 ~~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 211 SPLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp GGGTTCTTCCEEEEEEEEEECC
T ss_pred ccccCCCCCCEEEccCCeeecC
Confidence 55 3456788888999998753
No 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=5.4e-19 Score=178.03 Aligned_cols=154 Identities=20% Similarity=0.244 Sum_probs=123.4
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
..+|+.|+|++|.+.+..|..|.++++|++|+|++|.+++..+..+. ++|++|+|++|.+++..+..|..+++|++|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 36899999999999988888999999999999999999865555554 8899999999999888888888899999999
Q ss_pred cccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccC
Q 013460 160 VSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHF 235 (442)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l 235 (442)
|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|.+.+..+ .+..++ |+.|++++|.+
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 99999888878888888888999998888887666778888888888888888876543 344444 55554444433
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=7.1e-19 Score=182.15 Aligned_cols=105 Identities=25% Similarity=0.270 Sum_probs=47.6
Q ss_pred cEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 84 AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
+|+.|+|++|.+.+..+..|..+++|++|+|++|.+++..|..+. ++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 455555555555544444555555555555555555444443332 444444444444443322333444444444444
Q ss_pred cCcCCCchhhhhcCCCCCcEEeCCCCC
Q 013460 162 RNSLTQSIGDIFGNLAGLATLDLSFNN 188 (442)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 188 (442)
+|.+++..|..|..+++|++|+|++|.
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred CCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 444444444334444444444433333
No 56
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=9.8e-19 Score=171.51 Aligned_cols=176 Identities=19% Similarity=0.225 Sum_probs=150.1
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNV 160 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (442)
.+++.|+|++|.+.+..+..+..+++|++|+|++|.+++..|..+. ++|++|+|++|.++...+..+.++++|++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 6899999999999988888999999999999999999988787766 99999999999999555555789999999999
Q ss_pred ccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCc----------------------------------------------
Q 013460 161 SRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLP---------------------------------------------- 194 (442)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---------------------------------------------- 194 (442)
++|++++..+..+..+++|++|++++|.+++...
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L 228 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 228 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSC
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccc
Confidence 9999998888889999999999999998874321
Q ss_pred -------------hhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCcccCC--hhccccccccccCCcCC
Q 013460 195 -------------NSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSGWIP--RELISIRTFIYDGNSFD 257 (442)
Q Consensus 195 -------------~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~~~p--~~~~~l~~l~~~~n~~~ 257 (442)
..+..+++|++|+|++|.+++..+ .+..++ |+.|++++|.+++... ..+.+++.|++++|.+.
T Consensus 229 ~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 229 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC
T ss_pred cEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce
Confidence 124556788999999999988754 678888 9999999999987433 24678999999999987
Q ss_pred C
Q 013460 258 N 258 (442)
Q Consensus 258 ~ 258 (442)
.
T Consensus 309 ~ 309 (390)
T 3o6n_A 309 H 309 (390)
T ss_dssp C
T ss_pred e
Confidence 4
No 57
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.1e-18 Score=158.33 Aligned_cols=150 Identities=23% Similarity=0.270 Sum_probs=132.8
Q ss_pred CCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCC
Q 013460 109 LRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNN 188 (442)
Q Consensus 109 L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 188 (442)
.+.++.+++.+. .+|..+.++|++|+|++|.+++..|..|..+++|++|+|++|+++...+..|..+++|++|+|++|+
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcC-ccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 456788888887 6777788999999999999999889999999999999999999987777778999999999999999
Q ss_pred CCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccCChh---ccccccccccCCcCCCC
Q 013460 189 FSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWIPRE---LISIRTFIYDGNSFDNG 259 (442)
Q Consensus 189 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~p~~---~~~l~~l~~~~n~~~~~ 259 (442)
|++..+..|..+++|+.|+|++|+++..+..+..++ |+.|+|++|.|++..+.. +.+++.|++.+|++.|.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 997777778999999999999999997666777777 999999999999766544 46778899999999874
No 58
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=2.3e-19 Score=191.42 Aligned_cols=157 Identities=19% Similarity=0.295 Sum_probs=142.0
Q ss_pred cchhccCCCCCCEEEccCCCCCC-----------------CCCCCcc----CCCcEEEccCCcCCCCccccccCCCCCCE
Q 013460 99 MGYLLSDLLSLRKFDLSGNSIHD-----------------TIPYQLP----PNLTSLNLASNNFSGNLPYSIASMVSLSY 157 (442)
Q Consensus 99 ~~~~~~~l~~L~~L~l~~n~l~~-----------------~~p~~~~----~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 157 (442)
+|..+.++++|++|+|++|.|++ .+|..+. ++|++|+|++|.+.+.+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78899999999999999999998 3887763 89999999999999999999999999999
Q ss_pred EEcccCc-CCC-chhhhhcCCC-------CCcEEeCCCCCCCCCCch--hccCCCCCCEEEcccCcCCccCccCCCCC-c
Q 013460 158 LNVSRNS-LTQ-SIGDIFGNLA-------GLATLDLSFNNFSGDLPN--SFISLSNISSLYLQNNQVTGSLNVFSGLP-L 225 (442)
Q Consensus 158 L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L 225 (442)
|+|++|+ +++ .+|..+..++ +|++|+|++|+++ .+|. .+.++++|+.|+|++|+++ .+|.+..++ |
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcc
Confidence 9999998 998 8898777665 9999999999999 8898 9999999999999999999 566888888 9
Q ss_pred cEEEeecccCcccCChhc---cc-cccccccCCcCCC
Q 013460 226 TTLNVANNHFSGWIPREL---IS-IRTFIYDGNSFDN 258 (442)
Q Consensus 226 ~~L~ls~N~l~~~~p~~~---~~-l~~l~~~~n~~~~ 258 (442)
+.|+|++|.++ .+|..+ .+ |+.|++++|.+..
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~ 633 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY 633 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc
Confidence 99999999999 777654 45 7788999999873
No 59
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=8.2e-19 Score=184.53 Aligned_cols=178 Identities=20% Similarity=0.204 Sum_probs=124.9
Q ss_pred CcEEEEEeCCCCCCcccc-hhccCCCCCCEEEccCCCCCCC--------------------------CCCCcc--CCCcE
Q 013460 83 SAVVSIDISGLGLSGTMG-YLLSDLLSLRKFDLSGNSIHDT--------------------------IPYQLP--PNLTS 133 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~--------------------------~p~~~~--~~L~~ 133 (442)
.+++.|+|++|.+.+.+| ..+..+++|++|++++|.+.+. +|..+. ++|++
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 567778888887776554 5667777777777777765533 344443 66777
Q ss_pred EEccCCcCCCCccccccCCCCCCEEEcccCcCCCchh--------hhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCE
Q 013460 134 LNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIG--------DIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISS 205 (442)
Q Consensus 134 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 205 (442)
|+|++|.+++..+..+.++++|++|+|++|++++..+ ..+..+++|++|+|++|+++...+..|..+++|+.
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 7777777776666667777777777777777765322 12567777888888888877433345778888888
Q ss_pred EEcccCcCCccCc-cCCCCC-ccEEEeecccCcccCCh----hccccccccccCCcCCCCC
Q 013460 206 LYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSGWIPR----ELISIRTFIYDGNSFDNGP 260 (442)
Q Consensus 206 L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~~~p~----~~~~l~~l~~~~n~~~~~~ 260 (442)
|+|++|++++.++ .+..++ |+.|+|++|.+++..+. .+.+++.+++.+|++.|.+
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 8888888887665 356666 88888888888877665 3567788888888888765
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=1.6e-19 Score=182.23 Aligned_cols=171 Identities=19% Similarity=0.231 Sum_probs=84.2
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCC------------------CccCCCcEEEccCCcCCCC
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPY------------------QLPPNLTSLNLASNNFSGN 144 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~------------------~~~~~L~~L~Ls~n~l~~~ 144 (442)
.+|+.|+|++|.+++..| +..+++|++|+|++|.|++..+. ...++|+.|+|++|.+++.
T Consensus 58 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~ 135 (487)
T 3oja_A 58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135 (487)
T ss_dssp TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSG
T ss_pred CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCC
Confidence 566666666666665544 66666666666666655532211 0013344444444444444
Q ss_pred ccccccCCCCCCEEEcccCcCCCchhhhhc-CCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCC
Q 013460 145 LPYSIASMVSLSYLNVSRNSLTQSIGDIFG-NLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGL 223 (442)
Q Consensus 145 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l 223 (442)
.|..+..+++|++|+|++|.+++..|..+. .+++|++|+|++|.+++. |. +..+++|+.|+|++|.+++.++.+..+
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l 213 (487)
T 3oja_A 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSA 213 (487)
T ss_dssp GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGG
T ss_pred CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHhHcCC
Confidence 444444445555555555555544444443 445555555555555432 11 223455555555555555544444444
Q ss_pred C-ccEEEeecccCcccCChh---ccccccccccCCcCCC
Q 013460 224 P-LTTLNVANNHFSGWIPRE---LISIRTFIYDGNSFDN 258 (442)
Q Consensus 224 ~-L~~L~ls~N~l~~~~p~~---~~~l~~l~~~~n~~~~ 258 (442)
+ |+.|+|++|.+++ +|.. +.+++.|++++|++.|
T Consensus 214 ~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 4 5555555555553 2322 2334455555555554
No 61
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.79 E-value=4.1e-19 Score=156.56 Aligned_cols=171 Identities=20% Similarity=0.248 Sum_probs=124.2
Q ss_pred EEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCC-cc--CCCcEEEccCCcCCCCccccccCCCCCCEEEccc
Q 013460 86 VSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQ-LP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR 162 (442)
Q Consensus 86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (442)
+.+++++|++. .+|..+.. +|++|+|++|.|++..+.. +. ++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45677778775 45554433 8889999999988766643 43 8888889988888888888888888888999988
Q ss_pred CcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccCCh
Q 013460 163 NSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWIPR 241 (442)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~p~ 241 (442)
|++++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|.+.+..+...-.. ++...+..+......|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 88888877778888888888888888888888888888888888888888876543211011 22223444455555566
Q ss_pred hccccccccccCCcCCCC
Q 013460 242 ELISIRTFIYDGNSFDNG 259 (442)
Q Consensus 242 ~~~~l~~l~~~~n~~~~~ 259 (442)
.+....-.++..+.+.|.
T Consensus 168 ~l~~~~l~~l~~~~~~C~ 185 (192)
T 1w8a_A 168 KVRDVQIKDLPHSEFKCS 185 (192)
T ss_dssp TTTTSBGGGSCTTTCCCC
T ss_pred HHcCCChhhCcHhhcCcC
Confidence 666666666666666664
No 62
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=192.19 Aligned_cols=185 Identities=21% Similarity=0.171 Sum_probs=159.3
Q ss_pred CCCccEEecCCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCC-CCCcc--CCCcEEEccCCcCCCCccccc
Q 013460 73 ESWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTI-PYQLP--PNLTSLNLASNNFSGNLPYSI 149 (442)
Q Consensus 73 ~~w~gv~c~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~--~~L~~L~Ls~n~l~~~~p~~~ 149 (442)
..|..|.+...+++.|+|++|.+++..+..|.++++|++|+|++|.+.+.+ |..+. ++|++|+|++|.+++..|..|
T Consensus 14 ~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 14 CNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp CCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 368888875579999999999999999999999999999999999776666 55666 999999999999998889999
Q ss_pred cCCCCCCEEEcccCcCCCchhhh--hcCCCCCcEEeCCCCCCCCCCc-hhccCCCCCCEEEcccCcCCccCc-cCCCC--
Q 013460 150 ASMVSLSYLNVSRNSLTQSIGDI--FGNLAGLATLDLSFNNFSGDLP-NSFISLSNISSLYLQNNQVTGSLN-VFSGL-- 223 (442)
Q Consensus 150 ~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l-- 223 (442)
.++++|++|+|++|.+++.+|.. +.++++|++|+|++|.+++..+ ..|.++++|++|+|++|.+++..+ .+..+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 99999999999999999876665 8999999999999999997655 679999999999999999988654 45544
Q ss_pred C-ccEEEeecccCcccCChhccc---------cccccccCCcCC
Q 013460 224 P-LTTLNVANNHFSGWIPRELIS---------IRTFIYDGNSFD 257 (442)
Q Consensus 224 ~-L~~L~ls~N~l~~~~p~~~~~---------l~~l~~~~n~~~ 257 (442)
+ |+.|++++|.+.+..|..+.. ++.|++++|.+.
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCc
Confidence 4 999999999999877754332 778888888665
No 63
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1.1e-18 Score=154.51 Aligned_cols=150 Identities=17% Similarity=0.309 Sum_probs=125.5
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEccc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR 162 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (442)
.+++.|++++|.+. .+| .+..+++|++|++++|.+....+..-.++|++|++++|.+++..+..+..+++|++|+|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 68999999999998 445 6899999999999999776432222228999999999999988888999999999999999
Q ss_pred CcCCCchhhhhcCCCCCcEEeCCCCC-CCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcc
Q 013460 163 NSLTQSIGDIFGNLAGLATLDLSFNN-FSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSG 237 (442)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~ 237 (442)
|++++..+..+..+++|++|+|++|. ++ .+| .+..+++|+.|++++|.+++.. .+..++ |+.|++++|++.+
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 99998888999999999999999998 55 566 6889999999999999998754 666777 9999999998864
No 64
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.78 E-value=4.1e-19 Score=180.85 Aligned_cols=129 Identities=19% Similarity=0.260 Sum_probs=91.9
Q ss_pred CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCC--chhhhhcCCCCCcEEeCCCCCCCCCCchh-ccCCCCCCE
Q 013460 129 PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQ--SIGDIFGNLAGLATLDLSFNNFSGDLPNS-FISLSNISS 205 (442)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~ 205 (442)
++|++|++++|.+++.+|..+..+++|++|+|++|++++ .+|..+..+++|++|+|++|.+++.+|.. +..+++|+.
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 678888888888887777777788888888888888876 45567777888888888888887656654 667777888
Q ss_pred EEcccCcCCccCccCCCCCccEEEeecccCcccCChh---ccccccccccCCcCCC
Q 013460 206 LYLQNNQVTGSLNVFSGLPLTTLNVANNHFSGWIPRE---LISIRTFIYDGNSFDN 258 (442)
Q Consensus 206 L~Ls~N~l~~~~~~~~~l~L~~L~ls~N~l~~~~p~~---~~~l~~l~~~~n~~~~ 258 (442)
|++++|++++..+....-.|+.|++++|.++ .+|.. +.+++.|++++|.+..
T Consensus 404 L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS 458 (520)
T ss_dssp EECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred EECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc
Confidence 8888887776554211122777777777777 55543 4556677777777763
No 65
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=3.5e-19 Score=172.89 Aligned_cols=168 Identities=23% Similarity=0.212 Sum_probs=144.0
Q ss_pred CCCCCCccEEecC-----------CcEEEEEeCCCCCCcccchhcc-CCCCCCEEEccCCCCCCCCCCCcc--CCCcEEE
Q 013460 70 PCGESWKGVACEG-----------SAVVSIDISGLGLSGTMGYLLS-DLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLN 135 (442)
Q Consensus 70 ~c~~~w~gv~c~~-----------~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~ 135 (442)
.|.|.+..+.|.. ..++.|+|++|++++..+..+. .+++|++|+|++|+|++..+..+. ++|++|+
T Consensus 15 ~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 15 NCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 3545777888864 2478999999999998888888 999999999999999987777776 9999999
Q ss_pred ccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhc---cCCCCCCEEEcccCc
Q 013460 136 LASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSF---ISLSNISSLYLQNNQ 212 (442)
Q Consensus 136 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~ 212 (442)
|++|.|+...+..|..+++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..| ..+++|+.|+|++|+
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 99999998777789999999999999999998889999999999999999999996544445 579999999999999
Q ss_pred CCccCc-cCCCCC---ccEEEeecccCcc
Q 013460 213 VTGSLN-VFSGLP---LTTLNVANNHFSG 237 (442)
Q Consensus 213 l~~~~~-~~~~l~---L~~L~ls~N~l~~ 237 (442)
|++... .+..++ ++.|+|++|.+..
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCccCHHHhhhccHhhcceEEecCCCccC
Confidence 997663 455555 5889999999874
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=4.8e-19 Score=161.68 Aligned_cols=171 Identities=18% Similarity=0.236 Sum_probs=147.6
Q ss_pred CCcEEEEEeCCCC-CCcccchhccCCCCCCEEEccC-CCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCC-
Q 013460 82 GSAVVSIDISGLG-LSGTMGYLLSDLLSLRKFDLSG-NSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLS- 156 (442)
Q Consensus 82 ~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~- 156 (442)
..+++.|++++|. +++..+..|..+++|++|++++ |.+++..+..+. ++|++|++++|.+++ +|. +..+++|+
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~ 131 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDI 131 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCS
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccccc
Confidence 3689999999997 8877777999999999999999 999976666665 899999999999996 666 88899998
Q ss_pred --EEEcccC-cCCCchhhhhcCCCCCc-EEeCCCCCCCCCCchhccCCCCCCEEEcccCc-CCccCc-cCCCC-C-ccEE
Q 013460 157 --YLNVSRN-SLTQSIGDIFGNLAGLA-TLDLSFNNFSGDLPNSFISLSNISSLYLQNNQ-VTGSLN-VFSGL-P-LTTL 228 (442)
Q Consensus 157 --~L~L~~n-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~-~~~~l-~-L~~L 228 (442)
+|++++| ++++..+..|..+++|+ +|++++|+++ .+|......++|+.|+|++|+ +++..+ .+..+ + |+.|
T Consensus 132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L 210 (239)
T 2xwt_C 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210 (239)
T ss_dssp EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEE
T ss_pred ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEE
Confidence 9999999 99987777899999999 9999999999 666554445899999999995 987665 67788 6 9999
Q ss_pred EeecccCcccCChhccccccccccCCc
Q 013460 229 NVANNHFSGWIPRELISIRTFIYDGNS 255 (442)
Q Consensus 229 ~ls~N~l~~~~p~~~~~l~~l~~~~n~ 255 (442)
++++|.+++..+..+.+++.|++.++.
T Consensus 211 ~l~~N~l~~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 211 DVSQTSVTALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp ECTTCCCCCCCCTTCTTCSEEECTTC-
T ss_pred ECCCCccccCChhHhccCceeeccCcc
Confidence 999999997666778899999887653
No 67
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=8e-19 Score=182.06 Aligned_cols=161 Identities=20% Similarity=0.122 Sum_probs=142.8
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNV 160 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (442)
.+++.|+|++|.+++..|..|.++++|++|+|++|.+.+..|..+. ++|++|+|++|.+++..|..|.++++|++|+|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 4689999999999999999999999999999999999988888887 99999999999999888999999999999999
Q ss_pred ccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-cc--EEEeecccCc
Q 013460 161 SRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LT--TLNVANNHFS 236 (442)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~--~L~ls~N~l~ 236 (442)
++|++++..+..+.++++|++|+|++|.+++..+..+..+++|++|++++|.+++..+ .+..++ |+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 9999998778889999999999999999997443445559999999999999998765 466666 77 8999999998
Q ss_pred ccCChhc
Q 013460 237 GWIPREL 243 (442)
Q Consensus 237 ~~~p~~~ 243 (442)
+..|..+
T Consensus 193 ~~~~~~~ 199 (606)
T 3t6q_A 193 GIEPGAF 199 (606)
T ss_dssp EECTTTT
T ss_pred ccChhHh
Confidence 8776543
No 68
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=2.2e-18 Score=153.79 Aligned_cols=170 Identities=24% Similarity=0.293 Sum_probs=143.0
Q ss_pred EEecCCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCC
Q 013460 78 VACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSL 155 (442)
Q Consensus 78 v~c~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L 155 (442)
-.|.. +.+++++++++.. |..+ .++|++|++++|++++..+..+. ++|++|+|++|.+++..+..+..+++|
T Consensus 5 C~C~~---~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 78 (208)
T 2o6s_A 5 CSCSG---TTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78 (208)
T ss_dssp CEEET---TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEECC---CEEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCc
Confidence 34644 4678888888754 3333 46899999999999976665554 999999999999997777778999999
Q ss_pred CEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecc
Q 013460 156 SYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANN 233 (442)
Q Consensus 156 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N 233 (442)
++|+|++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|++++.++ .+..++ |+.|++++|
T Consensus 79 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 999999999998777778999999999999999997777778999999999999999998776 467777 999999999
Q ss_pred cCcccCChhccccccccccCCcCC
Q 013460 234 HFSGWIPRELISIRTFIYDGNSFD 257 (442)
Q Consensus 234 ~l~~~~p~~~~~l~~l~~~~n~~~ 257 (442)
.+.+..| +++.|++..|.+.
T Consensus 159 ~~~~~~~----~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 159 PWDCTCP----GIRYLSEWINKHS 178 (208)
T ss_dssp CBCCCTT----TTHHHHHHHHHCT
T ss_pred CeecCCC----CHHHHHHHHHhCC
Confidence 9987654 6778888888876
No 69
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=7.7e-19 Score=180.62 Aligned_cols=173 Identities=21% Similarity=0.303 Sum_probs=86.4
Q ss_pred cEEEEEeCCCCCCcccchhc-----cCCC--------------------------CCCEEEccCCCCCCCCCCCccCCCc
Q 013460 84 AVVSIDISGLGLSGTMGYLL-----SDLL--------------------------SLRKFDLSGNSIHDTIPYQLPPNLT 132 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~~~~~~-----~~l~--------------------------~L~~L~l~~n~l~~~~p~~~~~~L~ 132 (442)
++++|++++|.+.|.+|..+ ..++ +|++|++++|.+.........++|+
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~ 356 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCce
Confidence 67777777777776666544 2221 2444444444443211111125555
Q ss_pred EEEccCCcCCCCccccccCCCCCCEEEcccCcCCC--chhhhhcCCCCCcEEeCCCCCCCCCCch-hccCCCCCCEEEcc
Q 013460 133 SLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQ--SIGDIFGNLAGLATLDLSFNNFSGDLPN-SFISLSNISSLYLQ 209 (442)
Q Consensus 133 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls 209 (442)
+|++++|.+++.+|..+.++++|++|+|++|++++ .+|..+..+++|++|+|++|++++.+|. .+..+++|+.|+++
T Consensus 357 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~ 436 (562)
T 3a79_B 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436 (562)
T ss_dssp EEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred EEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence 55555555555555555555555555555555554 2334455555555555555555543333 24455555555555
Q ss_pred cCcCCccCccCCCCCccEEEeecccCcccCChh---ccccccccccCCcCC
Q 013460 210 NNQVTGSLNVFSGLPLTTLNVANNHFSGWIPRE---LISIRTFIYDGNSFD 257 (442)
Q Consensus 210 ~N~l~~~~~~~~~l~L~~L~ls~N~l~~~~p~~---~~~l~~l~~~~n~~~ 257 (442)
+|++++.++..-.-.|+.|++++|.++ .+|.. +.+++.|++++|.+.
T Consensus 437 ~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 437 SNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp SSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred CCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence 555554332111112555555555555 33332 233444555555554
No 70
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=1e-18 Score=178.39 Aligned_cols=151 Identities=25% Similarity=0.349 Sum_probs=92.1
Q ss_pred CCCCCCC---CCccE-EecCCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCC
Q 013460 67 EGDPCGE---SWKGV-ACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFS 142 (442)
Q Consensus 67 ~~~~c~~---~w~gv-~c~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~ 142 (442)
..++|.. .|.|+ .|...+++.|+|++|++++ +|..+ +++|++|+|++|.|+ .+| .+.++|++|+|++|.|+
T Consensus 39 ~~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip-~~l~~L~~L~Ls~N~l~ 113 (571)
T 3cvr_A 39 QALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP-ELPASLEYLDACDNRLS 113 (571)
T ss_dssp TCCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC-CCCTTCCEEECCSSCCS
T ss_pred cCCccccccchhhhccccccCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc-cccCCCCEEEccCCCCC
Confidence 3567743 58888 7887788889999888887 55544 367788888888777 456 44577777777777777
Q ss_pred CCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCC
Q 013460 143 GNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSG 222 (442)
Q Consensus 143 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 222 (442)
+ +|. +.+ +|++|+|++|+|++ +|. .+++|++|+|++|.|++ +|. .+++|+.|+|++|++++.+. +.
T Consensus 114 ~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~- 179 (571)
T 3cvr_A 114 T-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP- 179 (571)
T ss_dssp C-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC-
T ss_pred C-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh-
Confidence 5 555 443 66666666666665 333 45556666666665553 333 34455555555555554222 22
Q ss_pred CCccEEEeecccCc
Q 013460 223 LPLTTLNVANNHFS 236 (442)
Q Consensus 223 l~L~~L~ls~N~l~ 236 (442)
..|+.|+|++|.|+
T Consensus 180 ~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 180 ESLEALDVSTNLLE 193 (571)
T ss_dssp TTCCEEECCSSCCS
T ss_pred CCCCEEECcCCCCC
Confidence 11444444444444
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=5.2e-18 Score=159.41 Aligned_cols=154 Identities=21% Similarity=0.207 Sum_probs=136.5
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
..+|+.|+|++|.+++..+. ..+++|++|+|++|.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|+
T Consensus 54 l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp CTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence 47899999999999976443 78999999999999998 5666555 8999999999999987778899999999999
Q ss_pred cccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCccc
Q 013460 160 VSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGW 238 (442)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~ 238 (442)
|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+++..+..+.... |+.|+|++|.+...
T Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 99999998888888999999999999999996666677899999999999999998776666666 99999999998753
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=3.2e-19 Score=170.02 Aligned_cols=168 Identities=20% Similarity=0.173 Sum_probs=120.3
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
..+++.|+|++|.+.+..+ +..+++|++|+|++|.+++..+. ++|++|++++|.+++..+. .+++|++|+++
T Consensus 57 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~---~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~ 128 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNNISRVSCS---RGQGKKNIYLA 128 (317)
T ss_dssp CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEEC---TTCCEEECCSSCCSEEEEC---CCSSCEEEECC
T ss_pred CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCC---CCcCEEECCCCccCCcCcc---ccCCCCEEECC
Confidence 3567777777777766544 66777777777777776643211 5667777777776644333 35678888888
Q ss_pred cCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhc-cCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccC
Q 013460 162 RNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSF-ISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWI 239 (442)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~ 239 (442)
+|++++..+..+..+++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++... ...++ |+.|+|++|.+++..
T Consensus 129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~ 207 (317)
T 3o53_A 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMG 207 (317)
T ss_dssp SSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEEC
T ss_pred CCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcch
Confidence 888888777778888889999999998887666666 368888899999888887633 33355 888888888888654
Q ss_pred Ch--hccccccccccCCcCCC
Q 013460 240 PR--ELISIRTFIYDGNSFDN 258 (442)
Q Consensus 240 p~--~~~~l~~l~~~~n~~~~ 258 (442)
+. .+.+++.|++++|.+..
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCCE
T ss_pred hhhcccCcccEEECcCCcccc
Confidence 43 34567788888888874
No 73
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=6.9e-19 Score=181.09 Aligned_cols=177 Identities=25% Similarity=0.290 Sum_probs=134.8
Q ss_pred CCcEEEEEeCCCCCCccc--chhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCcc-ccccCCCCCC
Q 013460 82 GSAVVSIDISGLGLSGTM--GYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLP-YSIASMVSLS 156 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~ 156 (442)
..+++.|++++|.+.+.. +..+..+++|++|++++|.+.+..+. +. ++|++|++++|.+++..+ ..+.++++|+
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 356777888888777553 66777888888888888887754443 43 788888888888876655 4677788888
Q ss_pred EEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCC-CCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecc
Q 013460 157 YLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFS-GDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANN 233 (442)
Q Consensus 157 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N 233 (442)
+|++++|.+.+..|..+..+++|++|+|++|.++ +.+|..+..+++|+.|+|++|++++..+ .+..++ |+.|++++|
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 8888888888777778888888888888888886 4677788888888888888888887754 667776 888888888
Q ss_pred cCcccCChhc---cccccccccCCcCCCC
Q 013460 234 HFSGWIPREL---ISIRTFIYDGNSFDNG 259 (442)
Q Consensus 234 ~l~~~~p~~~---~~l~~l~~~~n~~~~~ 259 (442)
.+++..|..+ .+++.+++++|++.|.
T Consensus 505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 8887766543 5567778888888764
No 74
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=4.8e-18 Score=159.76 Aligned_cols=168 Identities=22% Similarity=0.283 Sum_probs=138.5
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEccc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR 162 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (442)
.+++.|++++|.+... +.+..+++|++|+|++|.+++..+..-.++|++|+|++|.+++ ++ .+..+++|++|+|++
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEH 121 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTT
T ss_pred CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCC
Confidence 6789999999998865 3488899999999999999876652222899999999999985 33 488999999999999
Q ss_pred CcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccCC-
Q 013460 163 NSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWIP- 240 (442)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~p- 240 (442)
|++++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++..+ +..++ |+.|++++|.+++...
T Consensus 122 n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~l 196 (291)
T 1h6t_A 122 NGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRAL 196 (291)
T ss_dssp SCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGG
T ss_pred CcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChhh
Confidence 999874 4588899999999999999864 678899999999999999988766 77777 9999999999986422
Q ss_pred hhccccccccccCCcCCCC
Q 013460 241 RELISIRTFIYDGNSFDNG 259 (442)
Q Consensus 241 ~~~~~l~~l~~~~n~~~~~ 259 (442)
..+.+|+.|++++|++...
T Consensus 197 ~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 197 AGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp TTCTTCSEEEEEEEEEECC
T ss_pred ccCCCCCEEECcCCcccCC
Confidence 3456788889999988753
No 75
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=4.2e-19 Score=171.78 Aligned_cols=158 Identities=21% Similarity=0.231 Sum_probs=134.6
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCcc-ccccCCCCCCEE
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLP-YSIASMVSLSYL 158 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L 158 (442)
..+++.|+|++|.+++..+..+..+++|++|+|++|.+++..+..+. ++|++|+|++|.++...+ ..+..+++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence 36899999999999998888999999999999999999965444344 899999999999995433 478899999999
Q ss_pred EcccC-cCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCcc-CCCCC-ccEEEeecccC
Q 013460 159 NVSRN-SLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNV-FSGLP-LTTLNVANNHF 235 (442)
Q Consensus 159 ~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~l~-L~~L~ls~N~l 235 (442)
++++| .+....+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+...... +..++ |+.|++++|.+
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence 99999 47766678899999999999999999988899999999999999999998765543 33355 89999999998
Q ss_pred cccC
Q 013460 236 SGWI 239 (442)
Q Consensus 236 ~~~~ 239 (442)
++..
T Consensus 235 ~~~~ 238 (353)
T 2z80_A 235 DTFH 238 (353)
T ss_dssp TTCC
T ss_pred cccc
Confidence 8743
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=1.1e-17 Score=158.62 Aligned_cols=168 Identities=24% Similarity=0.353 Sum_probs=143.9
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEccc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR 162 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (442)
.+++.|++++|.+... + .+..+++|++|+|++|.+.+..+..-.++|++|+|++|.+++. + .+..+++|++|+|++
T Consensus 41 ~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTT
T ss_pred CCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCC
Confidence 6899999999999864 3 6889999999999999999766522229999999999999864 3 689999999999999
Q ss_pred CcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccCC-
Q 013460 163 NSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWIP- 240 (442)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~p- 240 (442)
|++++. +. +..+++|++|++++|.+++..+ +..+++|+.|+|++|.+++..+ +..++ |+.|++++|.+++..+
T Consensus 117 n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l 191 (308)
T 1h6u_A 117 TQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPL 191 (308)
T ss_dssp SCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChhh
Confidence 999975 33 8999999999999999996543 8899999999999999998655 77777 9999999999997654
Q ss_pred hhccccccccccCCcCCCC
Q 013460 241 RELISIRTFIYDGNSFDNG 259 (442)
Q Consensus 241 ~~~~~l~~l~~~~n~~~~~ 259 (442)
..+.+++.|++++|.+...
T Consensus 192 ~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp GGCTTCCEEECTTSCCCBC
T ss_pred cCCCCCCEEEccCCccCcc
Confidence 4567889999999998754
No 77
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=175.90 Aligned_cols=173 Identities=20% Similarity=0.218 Sum_probs=151.3
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNV 160 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (442)
.+++.|+|++|.+++..+..|..+++|++|+|++|.+++..+..+. ++|++|+|++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 4799999999999998888999999999999999999987777776 99999999999999888889999999999999
Q ss_pred ccCcCCCchhhhhcCCCCCcEEeCCCCCCCC-CCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-c----cEEEeecc
Q 013460 161 SRNSLTQSIGDIFGNLAGLATLDLSFNNFSG-DLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-L----TTLNVANN 233 (442)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L----~~L~ls~N 233 (442)
++|++++..+..++++++|++|+|++|.+++ .+|..+.++++|++|++++|++++..+ .+..+. | ..|++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999997766679999999999999999997 479999999999999999999988654 444443 4 79999999
Q ss_pred cCcccCChhcc--ccccccccCCc
Q 013460 234 HFSGWIPRELI--SIRTFIYDGNS 255 (442)
Q Consensus 234 ~l~~~~p~~~~--~l~~l~~~~n~ 255 (442)
.+.+..|..+. +++.|++.+|.
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~ 211 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNF 211 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCC
T ss_pred CceecCHHHhccCcceeEeccccc
Confidence 99988776554 46677777763
No 78
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=6e-18 Score=175.97 Aligned_cols=159 Identities=21% Similarity=0.239 Sum_probs=136.0
Q ss_pred cEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 84 AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
.++.|||++|+|++..+..|.++++|++|+|++|+|++..+..|. ++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 689999999999988888999999999999999999987777776 899999999999997777789999999999999
Q ss_pred cCcCCCchhhhhcCCCCCcEEeCCCCCCCC-CCchhccCCCCCCEEEcccCcCCccCc-cCC---CCC--ccEEEeeccc
Q 013460 162 RNSLTQSIGDIFGNLAGLATLDLSFNNFSG-DLPNSFISLSNISSLYLQNNQVTGSLN-VFS---GLP--LTTLNVANNH 234 (442)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~---~l~--L~~L~ls~N~ 234 (442)
+|++++..+..|+++++|++|+|++|.+++ .+|..+..+++|++|+|++|++++..+ .+. .+. +..++++.|.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 999998777789999999999999999976 468888999999999999999988654 332 233 5578888888
Q ss_pred CcccCChh
Q 013460 235 FSGWIPRE 242 (442)
Q Consensus 235 l~~~~p~~ 242 (442)
+....+..
T Consensus 213 l~~i~~~~ 220 (635)
T 4g8a_A 213 MNFIQPGA 220 (635)
T ss_dssp CCEECTTT
T ss_pred ccccCccc
Confidence 87654443
No 79
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=6.8e-18 Score=175.56 Aligned_cols=166 Identities=20% Similarity=0.224 Sum_probs=138.5
Q ss_pred EeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCC
Q 013460 89 DISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLT 166 (442)
Q Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 166 (442)
+.++.+++ .+|..+. +++++|||++|.|++..+..|. ++|++|+|++|.|++..+..|.++++|++|+|++|+|+
T Consensus 37 ~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 37 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 44555565 3455443 4799999999999987777776 99999999999999877888999999999999999999
Q ss_pred CchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCcc-C-ccCCCCC-ccEEEeecccCcccCChhc
Q 013460 167 QSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGS-L-NVFSGLP-LTTLNVANNHFSGWIPREL 243 (442)
Q Consensus 167 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~-~~~~~l~-L~~L~ls~N~l~~~~p~~~ 243 (442)
+..+..|.++++|++|+|++|++++..+..|+++++|++|+|++|.+++. + ..+..++ |++|++++|.+++..+..+
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence 88888899999999999999999977777899999999999999999864 3 3567777 9999999999998888766
Q ss_pred cccc-------cccccCCcCC
Q 013460 244 ISIR-------TFIYDGNSFD 257 (442)
Q Consensus 244 ~~l~-------~l~~~~n~~~ 257 (442)
..+. .++++.|.+.
T Consensus 194 ~~L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 194 RVLHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp HHHHTCTTCCCEEECTTCCCC
T ss_pred cchhhhhhhhhhhhcccCccc
Confidence 5443 2445666654
No 80
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1e-17 Score=147.58 Aligned_cols=131 Identities=26% Similarity=0.337 Sum_probs=119.3
Q ss_pred CCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccc-cccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCC
Q 013460 109 LRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPY-SIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFN 187 (442)
Q Consensus 109 L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 187 (442)
-+++++++|+++ .+|..+..+|++|+|++|.+++..+. .+..+++|++|+|++|++++..|..|..+++|++|+|++|
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCEEEcCCCCcC-cCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 378999999996 67887888999999999999976664 4899999999999999999999999999999999999999
Q ss_pred CCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCcccCC
Q 013460 188 NFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSGWIP 240 (442)
Q Consensus 188 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~~~p 240 (442)
+|++..+..|..+++|++|+|++|++++.++ .+..++ |++|+|++|.+.+..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9998888889999999999999999999865 678887 9999999999998765
No 81
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.73 E-value=2.9e-17 Score=164.87 Aligned_cols=169 Identities=27% Similarity=0.388 Sum_probs=79.7
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEccc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR 162 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (442)
.+++.|++++|.+.+..+ +..+++|++|++++|.+++.....-.++|+.|++++|.+++..+ +..+++|++|++++
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 274 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCC
Confidence 456666666666555433 44455555555555555432110111455555555555543322 44444455555555
Q ss_pred CcCCCchh--------------------hhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCC
Q 013460 163 NSLTQSIG--------------------DIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSG 222 (442)
Q Consensus 163 n~l~~~~p--------------------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 222 (442)
|.+++..+ ..+..+++|++|+|++|++++..| +..+++|+.|++++|.+++. +.+..
T Consensus 275 n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~ 351 (466)
T 1o6v_A 275 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLAN 351 (466)
T ss_dssp SCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTT
T ss_pred CccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhcc
Confidence 54443322 004444455555555555544333 34445555555555555443 33444
Q ss_pred CC-ccEEEeecccCcccCC-hhccccccccccCCcCCC
Q 013460 223 LP-LTTLNVANNHFSGWIP-RELISIRTFIYDGNSFDN 258 (442)
Q Consensus 223 l~-L~~L~ls~N~l~~~~p-~~~~~l~~l~~~~n~~~~ 258 (442)
++ |+.|++++|.+++..| ..+.+++.|++.+|++..
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 352 LTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred CCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccC
Confidence 44 5555555555555444 223444455555555543
No 82
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.73 E-value=3.2e-17 Score=158.01 Aligned_cols=168 Identities=21% Similarity=0.305 Sum_probs=117.6
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
..+++.|++++|.+.+..+ +..+++|++|++++|.+.+..+....++|+.|++++|.+++..+ +..+++|++|+++
T Consensus 154 l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~ 229 (347)
T 4fmz_A 154 MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIG 229 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred CCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEcc
Confidence 3578888888888776544 77788888888888888755442222777788888777775443 6677777778887
Q ss_pred cCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccCC
Q 013460 162 RNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWIP 240 (442)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~p 240 (442)
+|++++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++++. +.+..++ |+.|++++|.+++..|
T Consensus 230 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 230 NNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGH
T ss_pred CCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcCh
Confidence 777775543 67777777777777777743 4567777777777777777764 4455555 7777777777776665
Q ss_pred hh---ccccccccccCCcCCC
Q 013460 241 RE---LISIRTFIYDGNSFDN 258 (442)
Q Consensus 241 ~~---~~~l~~l~~~~n~~~~ 258 (442)
.. +.+++.|++++|++..
T Consensus 305 ~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp HHHHTCTTCSEEECCSSSCCC
T ss_pred hHhhccccCCEEEccCCcccc
Confidence 43 4556667777777654
No 83
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=2.2e-17 Score=170.21 Aligned_cols=148 Identities=26% Similarity=0.347 Sum_probs=124.6
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
..+|+.|+|++|.+.+..+ +..+++|+.|+|++|.|.+. + .+. ++|+.|+|++|.+++. +.+..+++|+.|+
T Consensus 64 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ 137 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLY 137 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEE
T ss_pred CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEE
Confidence 4789999999999987665 88999999999999999863 3 333 8999999999999853 4588899999999
Q ss_pred cccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCccc
Q 013460 160 VSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGW 238 (442)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~ 238 (442)
|++|++++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|+|++. +.+..++ |+.|+|++|.+.+.
T Consensus 138 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 138 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcCC
Confidence 999999876 568899999999999999997665 88999999999999999875 5677777 99999999998865
Q ss_pred CC
Q 013460 239 IP 240 (442)
Q Consensus 239 ~p 240 (442)
..
T Consensus 213 p~ 214 (605)
T 1m9s_A 213 PI 214 (605)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 84
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=1e-18 Score=184.38 Aligned_cols=193 Identities=24% Similarity=0.213 Sum_probs=74.5
Q ss_pred ChHHHHHHHHHHHhCCCCCC--CCCCCCCCCCCCCCCCccEEecCCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCC
Q 013460 40 DSSDVQALQVLYTSLNSPSV--LTNWKGNEGDPCGESWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGN 117 (442)
Q Consensus 40 ~~~~~~~L~~~~~~~~~~~~--l~~w~~~~~~~c~~~w~gv~c~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 117 (442)
...+.++|+.++..+....+ -..|.......+ .|.++.+..++++.|+|.+|.+... +..+ |+.++|+.|
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~ 201 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSG--TATNSAVSTPLTPKIELFANGKDEA-NQAL-----LQHKKLSQY 201 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCCCccc--cCCCceecCCccceEEeeCCCCCcc-hhhH-----hhcCccCcc
Confidence 34566788888876643322 234543322233 7888888888888888877766542 1111 222222222
Q ss_pred CCCC---------CCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCC
Q 013460 118 SIHD---------TIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSF 186 (442)
Q Consensus 118 ~l~~---------~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 186 (442)
.|.+ ..+..+. ..|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|..+++|++|+|++
T Consensus 202 ~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 202 SIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH 279 (727)
T ss_dssp --------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTT
T ss_pred cccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcC
Confidence 2221 1122222 55555566555555 44555555555566666655555 4555555555566666666
Q ss_pred CCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccCChhc
Q 013460 187 NNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWIPREL 243 (442)
Q Consensus 187 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~p~~~ 243 (442)
|.|+ .+|..|..+++|++|+|++|.|+..+..+..++ |+.|+|++|.|++.+|..+
T Consensus 280 N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 280 NRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp SCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 6555 455555555556666666555554433455555 5556666665555555443
No 85
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.72 E-value=3.5e-17 Score=167.67 Aligned_cols=172 Identities=24% Similarity=0.295 Sum_probs=147.2
Q ss_pred CCccEEecCCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccC
Q 013460 74 SWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIAS 151 (442)
Q Consensus 74 ~w~gv~c~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~ 151 (442)
.|.|+ | ++++++++. +|..+. ++|++|+|++|.+++..|..+. ++|++|+|++|.+++..|..|.+
T Consensus 5 ~~~~~-c--------~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 72 (549)
T 2z81_A 5 DASGV-C--------DGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS 72 (549)
T ss_dssp CTTSE-E--------ECTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CCCce-E--------ECCCCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccc
Confidence 78887 7 456677774 454443 7899999999999988887776 99999999999999888899999
Q ss_pred CCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCC-CCchhccCCCCCCEEEcccCcCCccCc--cCCCCC-ccE
Q 013460 152 MVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSG-DLPNSFISLSNISSLYLQNNQVTGSLN--VFSGLP-LTT 227 (442)
Q Consensus 152 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~l~-L~~ 227 (442)
+++|++|+|++|++++..|..|+++++|++|+|++|.+++ ..|..+..+++|++|++++|.+.+.++ .+..++ |++
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 9999999999999999988889999999999999999986 467789999999999999999555443 688888 999
Q ss_pred EEeecccCcccCChhcc---ccccccccCCcCC
Q 013460 228 LNVANNHFSGWIPRELI---SIRTFIYDGNSFD 257 (442)
Q Consensus 228 L~ls~N~l~~~~p~~~~---~l~~l~~~~n~~~ 257 (442)
|++++|.+++.+|..+. +++.|++.+|.+.
T Consensus 153 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred eeccCCcccccChhhhhccccCceEecccCccc
Confidence 99999999998887665 4566778877753
No 86
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.9e-17 Score=146.38 Aligned_cols=150 Identities=15% Similarity=0.237 Sum_probs=127.7
Q ss_pred cCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcE
Q 013460 104 SDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLAT 181 (442)
Q Consensus 104 ~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 181 (442)
..+++|+.|++++|.++ .+| .+. ++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56789999999999998 444 343 99999999999776 3357889999999999999999888889999999999
Q ss_pred EeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccCC-hhccccccccccCCcCC
Q 013460 182 LDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWIP-RELISIRTFIYDGNSFD 257 (442)
Q Consensus 182 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~p-~~~~~l~~l~~~~n~~~ 257 (442)
|+|++|.+++..|..+..+++|++|++++|.+.+.++.+..++ |+.|++++|.+++..+ ..+.+++.|++.+|++.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC---
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccC
Confidence 9999999998889999999999999999998444455777888 9999999999997533 55778899999999875
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=7.3e-17 Score=151.68 Aligned_cols=148 Identities=24% Similarity=0.332 Sum_probs=129.0
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
..+|+.|+|++|.+.+..+ +..+++|++|+|++|.+++.....-.++|++|+|++|.+++. ..+..+++|++|+++
T Consensus 67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~ 142 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLG 142 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECC
T ss_pred CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEcc
Confidence 4799999999999998665 999999999999999998643212229999999999999964 568899999999999
Q ss_pred cCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCccc
Q 013460 162 RNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGW 238 (442)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~ 238 (442)
+|++++. ..+..+++|++|+|++|++++..+ +..+++|+.|+|++|.+++. +.+..++ |+.|++++|.+...
T Consensus 143 ~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 143 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEEEECC
T ss_pred CCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCCcccCC
Confidence 9999976 568999999999999999997654 89999999999999999875 4577787 99999999999864
No 88
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=166.86 Aligned_cols=172 Identities=23% Similarity=0.292 Sum_probs=147.8
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCC--CccccccCCCCCCEE
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSG--NLPYSIASMVSLSYL 158 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L 158 (442)
.+++.|++++|.+.... .+..+++|++|++++|.+++.+|..+. ++|++|+|++|.+++ .+|..+..+++|++|
T Consensus 302 ~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred CceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence 46999999999987543 126889999999999999998888776 999999999999996 667889999999999
Q ss_pred EcccCcCCCchhhh-hcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCc
Q 013460 159 NVSRNSLTQSIGDI-FGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFS 236 (442)
Q Consensus 159 ~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~ 236 (442)
+|++|++++.+|.. +..+++|++|++++|.+++.+|..+. ++|+.|+|++|+++..+..+..++ |+.|++++|.++
T Consensus 380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC
Confidence 99999999866654 88899999999999999988877664 799999999999996666666777 999999999999
Q ss_pred ccCChh----ccccccccccCCcCCCC
Q 013460 237 GWIPRE----LISIRTFIYDGNSFDNG 259 (442)
Q Consensus 237 ~~~p~~----~~~l~~l~~~~n~~~~~ 259 (442)
. +|.. +.+++.|++++|++.|.
T Consensus 458 ~-l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 458 S-VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp C-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred c-cCHHHhccCCcccEEECcCCCCccc
Confidence 5 5543 45678899999999985
No 89
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=5.6e-17 Score=161.58 Aligned_cols=177 Identities=22% Similarity=0.277 Sum_probs=154.8
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCcc-ccccCCCCCCEE
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLP-YSIASMVSLSYL 158 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L 158 (442)
..+|+.|+|++|++++..+..|..+++|++|+|++|.+....+..+. ++|++|+|++|+..+.++ ..|.++++|++|
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 36899999999999988888999999999999999999977666665 999999999955444444 478999999999
Q ss_pred EcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCc
Q 013460 159 NVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFS 236 (442)
Q Consensus 159 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~ 236 (442)
+|++|+++. +| .+..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++..+ .+..++ |+.|+|++|.++
T Consensus 191 ~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 191 NLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp ECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred cCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 999999985 45 48899999999999999998889999999999999999999998765 677888 999999999999
Q ss_pred ccCChh---ccccccccccCCcCCCCC
Q 013460 237 GWIPRE---LISIRTFIYDGNSFDNGP 260 (442)
Q Consensus 237 ~~~p~~---~~~l~~l~~~~n~~~~~~ 260 (442)
+..+.. +.+++.|++.+|+|.|.+
T Consensus 269 ~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 269 LLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred ccChhHhccccCCCEEEcCCCCccCCC
Confidence 776654 456788999999999865
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=1e-16 Score=163.53 Aligned_cols=155 Identities=22% Similarity=0.323 Sum_probs=125.7
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEccc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR 162 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (442)
.+++.|+|++|.|+ .+| ..+++|++|+|++|.|++ +|. +..+|++|+|++|.+++ +|. .+++|++|+|++
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDNNQLTM-LPE---LPALLEYINADN 149 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCCCcCCC-CCC---cCccccEEeCCC
Confidence 67999999999998 455 567899999999999997 776 66799999999999996 666 688999999999
Q ss_pred CcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCCc-------cEEEeecccC
Q 013460 163 NSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLPL-------TTLNVANNHF 235 (442)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~L-------~~L~ls~N~l 235 (442)
|+|++ +|. .+++|++|+|++|+|++ +|. |. ++|+.|+|++|+|+..+. +.. .| +.|+|++|.|
T Consensus 150 N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~-~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 150 NQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV-RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC---------CCEEEECCSSCC
T ss_pred CccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH-hhhcccccceEEecCCCcc
Confidence 99987 554 57899999999999986 676 65 899999999999985544 433 46 9999999999
Q ss_pred cccCChh---ccccccccccCCcCCC
Q 013460 236 SGWIPRE---LISIRTFIYDGNSFDN 258 (442)
Q Consensus 236 ~~~~p~~---~~~l~~l~~~~n~~~~ 258 (442)
+. +|.. +.+++.|++++|++.+
T Consensus 220 ~~-lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 220 TH-IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CC-CCGGGGGSCTTEEEECCSSSCCH
T ss_pred ee-cCHHHhcCCCCCEEEeeCCcCCC
Confidence 84 6654 4566778899998864
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.3e-16 Score=164.44 Aligned_cols=170 Identities=22% Similarity=0.290 Sum_probs=144.8
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
..+|+.|+|++|.+... + .+..+++|+.|+|++|.|.+..+..-.++|+.|+|++|.+++ ++ .+..+++|+.|+|+
T Consensus 42 L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred CCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence 36889999999999764 3 589999999999999999987662223999999999999985 33 78999999999999
Q ss_pred cCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccCC
Q 013460 162 RNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWIP 240 (442)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~p 240 (442)
+|++++. +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++.++ +..++ |+.|+|++|.|++...
T Consensus 118 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~ 192 (605)
T 1m9s_A 118 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA 192 (605)
T ss_dssp TSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred CCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChH
Confidence 9999974 4588999999999999999965 678999999999999999998777 77787 9999999999987521
Q ss_pred -hhccccccccccCCcCCCCC
Q 013460 241 -RELISIRTFIYDGNSFDNGP 260 (442)
Q Consensus 241 -~~~~~l~~l~~~~n~~~~~~ 260 (442)
..+.+|+.|++++|++...+
T Consensus 193 l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp GTTCTTCSEEECCSEEEECCC
T ss_pred HccCCCCCEEEccCCcCcCCc
Confidence 34677888999999887544
No 92
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=7.8e-17 Score=161.15 Aligned_cols=177 Identities=24% Similarity=0.314 Sum_probs=154.6
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCcc-ccccCCCCCCEEE
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLP-YSIASMVSLSYLN 159 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~ 159 (442)
.+|+.|+|++|.+++..+..|..+++|++|+|++|.++...+..+. ++|++|+|++|+..+.++ ..|.++++|++|+
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence 6899999999999988888899999999999999999976665665 999999999954444444 4688999999999
Q ss_pred cccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCcc
Q 013460 160 VSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSG 237 (442)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~ 237 (442)
|++|++++. | .+..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++..+ .+..++ |+.|+|++|.+++
T Consensus 203 L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 203 LGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp CTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 999999965 4 48889999999999999999889999999999999999999998765 678887 9999999999997
Q ss_pred cCChh---ccccccccccCCcCCCCCC
Q 013460 238 WIPRE---LISIRTFIYDGNSFDNGPA 261 (442)
Q Consensus 238 ~~p~~---~~~l~~l~~~~n~~~~~~~ 261 (442)
..+.. +.+++.|++.+|++.|.+.
T Consensus 281 ~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 281 LPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred cChHHhccccCCCEEEccCCCcCCCCC
Confidence 66644 5667889999999998653
No 93
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.4e-17 Score=168.03 Aligned_cols=159 Identities=19% Similarity=0.150 Sum_probs=132.9
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCcccccc-CCCCCCEEE
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIA-SMVSLSYLN 159 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~ 159 (442)
.+++.|+|++|.+.+..+. .+++|+.|+|++|.+++..|..+. ++|++|+|++|.+++..|..+. .+++|++|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 4566666677777665543 467899999999999988887776 9999999999999998888886 799999999
Q ss_pred cccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCc-c
Q 013460 160 VSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFS-G 237 (442)
Q Consensus 160 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~-~ 237 (442)
|++|.+++..+ +..+++|++|+|++|.+++ +|..+..+++|+.|+|++|.+++.++.+..++ |+.|++++|.+. +
T Consensus 176 Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 176 LQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp CTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred cCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence 99999997632 4469999999999999996 45559999999999999999998777788887 999999999998 5
Q ss_pred cCChhccccc
Q 013460 238 WIPRELISIR 247 (442)
Q Consensus 238 ~~p~~~~~l~ 247 (442)
.+|..+..+.
T Consensus 253 ~~~~~~~~l~ 262 (487)
T 3oja_A 253 TLRDFFSKNQ 262 (487)
T ss_dssp HHHHHHTTCH
T ss_pred chHHHHHhCC
Confidence 6666555443
No 94
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.70 E-value=4.4e-17 Score=167.47 Aligned_cols=173 Identities=23% Similarity=0.274 Sum_probs=139.7
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCC--CccccccCCCCCCEE
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSG--NLPYSIASMVSLSYL 158 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L 158 (442)
.+++.|++++|.+.... ....+++|++|++++|.+++.+|..+. ++|++|+|++|.+++ .+|..+.++++|++|
T Consensus 331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence 46899999999886432 126788999999999999988887776 899999999999986 345678899999999
Q ss_pred EcccCcCCCchhh-hhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCc
Q 013460 159 NVSRNSLTQSIGD-IFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFS 236 (442)
Q Consensus 159 ~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~ 236 (442)
+|++|++++.+|. .+..+++|++|+|++|++++.+|..+. ++|+.|+|++|+++..++.+..++ |+.|+|++|.++
T Consensus 409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC
Confidence 9999999884554 478889999999999999877766554 689999999999987666666777 999999999998
Q ss_pred ccCChh----ccccccccccCCcCCCCC
Q 013460 237 GWIPRE----LISIRTFIYDGNSFDNGP 260 (442)
Q Consensus 237 ~~~p~~----~~~l~~l~~~~n~~~~~~ 260 (442)
+ +|.. +.+++.+++++|++.|.+
T Consensus 487 ~-l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 487 S-VPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp C-CCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred C-CCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 4 4433 456778889999998754
No 95
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=1.7e-17 Score=158.09 Aligned_cols=169 Identities=17% Similarity=0.182 Sum_probs=133.6
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
..+++.|+|++|.+++.. ..++|++|++++|.+++..+.. .++|++|++++|.+++..+..+..+++|++|+|+
T Consensus 79 l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 79 LSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp CTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC-CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred cCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc-cCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 478999999999887543 3378999999999988665544 3779999999999988777788888899999999
Q ss_pred cCcCCCchhhhh-cCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccC
Q 013460 162 RNSLTQSIGDIF-GNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWI 239 (442)
Q Consensus 162 ~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~ 239 (442)
+|.+++..+..+ ..+++|++|+|++|.+++. +. ...+++|++|+|++|++++.++.+..++ |+.|++++|.+++ +
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-l 229 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-I 229 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-E
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc-h
Confidence 999988777666 4688899999999988844 33 3358889999999999988777777777 8999999998884 4
Q ss_pred Chh---ccccccccccCCcCCCC
Q 013460 240 PRE---LISIRTFIYDGNSFDNG 259 (442)
Q Consensus 240 p~~---~~~l~~l~~~~n~~~~~ 259 (442)
|.. +.+++.|++++|++.|+
T Consensus 230 ~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 230 EKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp CTTCCCCTTCCEEECTTCCCBHH
T ss_pred hhHhhcCCCCCEEEccCCCccCc
Confidence 543 45677888889988854
No 96
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.70 E-value=1.9e-16 Score=159.01 Aligned_cols=169 Identities=25% Similarity=0.355 Sum_probs=146.1
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
..+++.|++++|.+.+. ..+..+++|++|++++|.+.+..|....++|+.|++++|.+++. ..+..+++|++|+++
T Consensus 176 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA 251 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECC
Confidence 36899999999999865 35889999999999999999877744459999999999999854 468899999999999
Q ss_pred cCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccCC
Q 013460 162 RNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWIP 240 (442)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~p 240 (442)
+|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..++ |+.|++++|.+++..|
T Consensus 252 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 252 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG
T ss_pred CCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh
Confidence 999998765 8899999999999999996544 8899999999999999998655 66677 9999999999998766
Q ss_pred -hhccccccccccCCcCCCC
Q 013460 241 -RELISIRTFIYDGNSFDNG 259 (442)
Q Consensus 241 -~~~~~l~~l~~~~n~~~~~ 259 (442)
..+.+++.|++.+|.+...
T Consensus 327 ~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC
T ss_pred hccCccCCEeECCCCccCCc
Confidence 4567888999999988753
No 97
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.70 E-value=2e-16 Score=152.34 Aligned_cols=167 Identities=23% Similarity=0.354 Sum_probs=114.2
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEccc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR 162 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (442)
.+++.|++++|.....++. +..+++|++|++++|.+.+..+..-.++|++|++++|.+++..+ +..+++|+.|++++
T Consensus 132 ~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV 208 (347)
T ss_dssp TTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred CceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--ccCCCccceeeccc
Confidence 5677777777765544443 77777788888877777755442222777788887777774333 66777778888887
Q ss_pred CcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccCC-
Q 013460 163 NSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWIP- 240 (442)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~p- 240 (442)
|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +.+..++ |+.|++++|.+++...
T Consensus 209 n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~~ 283 (347)
T 4fmz_A 209 NQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDISVL 283 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCChhh
Confidence 77776544 6677777888888877774433 77777788888887777764 4556666 7778888777776411
Q ss_pred hhccccccccccCCcCC
Q 013460 241 RELISIRTFIYDGNSFD 257 (442)
Q Consensus 241 ~~~~~l~~l~~~~n~~~ 257 (442)
..+.+++.|++++|.+.
T Consensus 284 ~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp GGCTTCSEEECCSSCCC
T ss_pred cCCCCCCEEECcCCcCC
Confidence 34566777777777765
No 98
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=6.1e-17 Score=139.24 Aligned_cols=130 Identities=22% Similarity=0.262 Sum_probs=62.3
Q ss_pred CcEEEEEeCCCCCC-cccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 83 SAVVSIDISGLGLS-GTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 83 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
.+++.|++++|++. +.+|..+..+++|++|+|++|.+++. ..+. ++|++|+|++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34555566655555 44555555555555555555555543 2222 4455555555555444444444444555555
Q ss_pred cccCcCCCch-hhhhcCCCCCcEEeCCCCCCCCCCc---hhccCCCCCCEEEcccCcCC
Q 013460 160 VSRNSLTQSI-GDIFGNLAGLATLDLSFNNFSGDLP---NSFISLSNISSLYLQNNQVT 214 (442)
Q Consensus 160 L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~ 214 (442)
|++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555444321 1344444445555555554443322 24444444444444444443
No 99
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=2e-16 Score=139.27 Aligned_cols=124 Identities=25% Similarity=0.425 Sum_probs=84.2
Q ss_pred EEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCC
Q 013460 112 FDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSG 191 (442)
Q Consensus 112 L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 191 (442)
+++++|.++ .+|..+.++|++|+|++|.++ .+|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++
T Consensus 15 l~~~~~~l~-~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 15 VRCSNKGLK-VLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp EECTTSCCS-SCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred EEcCCCCCC-cCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 344444443 344444456666666666666 566677777777777777777777766777777777777777777777
Q ss_pred CCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecccCcc
Q 013460 192 DLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANNHFSG 237 (442)
Q Consensus 192 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~ 237 (442)
..|..|..+++|+.|+|++|+++..++ .+..++ |+.|+|++|.+..
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 666677777777777777777776554 355555 6777776666653
No 100
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=1.3e-16 Score=138.43 Aligned_cols=109 Identities=23% Similarity=0.268 Sum_probs=51.6
Q ss_pred CcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEccc
Q 013460 131 LTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQN 210 (442)
Q Consensus 131 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 210 (442)
|+.|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 109 (177)
T 2o6r_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcC
Confidence 33333333333333333344445555555555555544444444555555555555555544444444555555555555
Q ss_pred CcCCccCcc-CCCCC-ccEEEeecccCcccC
Q 013460 211 NQVTGSLNV-FSGLP-LTTLNVANNHFSGWI 239 (442)
Q Consensus 211 N~l~~~~~~-~~~l~-L~~L~ls~N~l~~~~ 239 (442)
|++++.++. +..++ |+.|++++|.+.+..
T Consensus 110 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 110 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 555544332 33344 555555555555443
No 101
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=1.5e-16 Score=136.75 Aligned_cols=131 Identities=24% Similarity=0.219 Sum_probs=110.2
Q ss_pred CCCCCCEEEccCCCCC-CCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcE
Q 013460 105 DLLSLRKFDLSGNSIH-DTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLAT 181 (442)
Q Consensus 105 ~l~~L~~L~l~~n~l~-~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 181 (442)
..++|+.|++++|.++ +.+|..+. ++|++|+|++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 4478999999999998 67777655 8999999999999865 77888999999999999999878888888999999
Q ss_pred EeCCCCCCCCCC-chhccCCCCCCEEEcccCcCCccCc----cCCCCC-ccEEEeecccCcc
Q 013460 182 LDLSFNNFSGDL-PNSFISLSNISSLYLQNNQVTGSLN----VFSGLP-LTTLNVANNHFSG 237 (442)
Q Consensus 182 L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~l~-L~~L~ls~N~l~~ 237 (442)
|+|++|.+++.. +..+..+++|++|++++|.+++.++ .+..++ |++|++++|.+..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 999999998542 2778899999999999999988766 577777 8889988888763
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=3e-18 Score=167.78 Aligned_cols=177 Identities=19% Similarity=0.237 Sum_probs=137.8
Q ss_pred cCCcEEEEEeCCCCCCc----ccchhccCCCCCCEEEccCCCCCCCCCCCcc---------------CCCcEEEccCCcC
Q 013460 81 EGSAVVSIDISGLGLSG----TMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP---------------PNLTSLNLASNNF 141 (442)
Q Consensus 81 ~~~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~---------------~~L~~L~Ls~n~l 141 (442)
...+|++|+|++|.+.+ .++..+..+++|++|+|++|.+++..+..+. ++|++|+|++|.+
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 34788999999999887 5777888889999999999988644333332 5899999999998
Q ss_pred C-CCcc---ccccCCCCCCEEEcccCcCCC-----chhhhhcCCCCCcEEeCCCCCCC----CCCchhccCCCCCCEEEc
Q 013460 142 S-GNLP---YSIASMVSLSYLNVSRNSLTQ-----SIGDIFGNLAGLATLDLSFNNFS----GDLPNSFISLSNISSLYL 208 (442)
Q Consensus 142 ~-~~~p---~~~~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~L 208 (442)
+ +.++ ..+..+++|++|+|++|+++. ..+..+..+++|++|+|++|.++ +.+|..+..+++|++|+|
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 7 4444 466778899999999999873 34447788899999999999986 567888888999999999
Q ss_pred ccCcCCcc----C-ccC--CCCC-ccEEEeecccCcc----cCChh----ccccccccccCCcCC
Q 013460 209 QNNQVTGS----L-NVF--SGLP-LTTLNVANNHFSG----WIPRE----LISIRTFIYDGNSFD 257 (442)
Q Consensus 209 s~N~l~~~----~-~~~--~~l~-L~~L~ls~N~l~~----~~p~~----~~~l~~l~~~~n~~~ 257 (442)
++|.+++. + ..+ ..++ |+.|+|++|.+++ .+|.. +.+++.|++.+|++.
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 99998864 2 233 3355 9999999999987 46643 477888889998885
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=8.1e-17 Score=149.07 Aligned_cols=146 Identities=21% Similarity=0.248 Sum_probs=108.0
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEccc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR 162 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (442)
.+|+.|++++|++... + .+..+++|++|+|++|.+++..+..-.++|++|+|++|.+++ +|. +.. ++|++|+|++
T Consensus 41 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~ 115 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDN 115 (263)
T ss_dssp TTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCS
T ss_pred CcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccC
Confidence 6788888888888753 3 677888888888888888865552212788888888888875 333 223 7888888888
Q ss_pred CcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCccc
Q 013460 163 NSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGW 238 (442)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~ 238 (442)
|++++. + .+..+++|++|+|++|++++. + .+..+++|+.|+|++|++++. +.+..++ |+.|++++|.+.+.
T Consensus 116 N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 116 NELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred CccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 888764 3 477888888888888888753 3 577888888888888888776 5666666 88888888887754
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=3e-16 Score=145.18 Aligned_cols=165 Identities=22% Similarity=0.317 Sum_probs=134.7
Q ss_pred cEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 84 AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
+++.++++++.+.+.. .+..+++|++|++++|.++. ++ .+. ++|++|+|++|.+++..+ +..+++|++|+|+
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4555677777777554 57888999999999999985 34 343 899999999999996554 8999999999999
Q ss_pred cCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcccCC
Q 013460 162 RNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSGWIP 240 (442)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~~~p 240 (442)
+|++++. |. +.. ++|++|+|++|++++ ++ .+..+++|+.|+|++|++++. +.+..++ |+.|++++|.+++...
T Consensus 94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~~~ 167 (263)
T 1xeu_A 94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNTGG 167 (263)
T ss_dssp SSCCSCC-TT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBCTT
T ss_pred CCccCCc-Cc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcchHH
Confidence 9999874 33 333 899999999999995 44 589999999999999999986 4677777 9999999999998621
Q ss_pred -hhccccccccccCCcCCCCC
Q 013460 241 -RELISIRTFIYDGNSFDNGP 260 (442)
Q Consensus 241 -~~~~~l~~l~~~~n~~~~~~ 260 (442)
..+.+++.|++++|++.+.+
T Consensus 168 l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp STTCCCCCEEEEEEEEEECCC
T ss_pred hccCCCCCEEeCCCCcccCCc
Confidence 34667888999999998653
No 105
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.68 E-value=4e-16 Score=155.85 Aligned_cols=161 Identities=22% Similarity=0.329 Sum_probs=110.4
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEccc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR 162 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (442)
.++++|++++|.+++ +| .+..+++|++|++++|++++ +|..+ .+|++|++++|.+++ +| .+.++++|++|++++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~-~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP-PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC-TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc-ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCC
Confidence 467777777777775 45 47777778888888877775 44332 578888888887775 45 577788888888888
Q ss_pred CcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCCccEEEeecccCcccCChh
Q 013460 163 NSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLPLTTLNVANNHFSGWIPRE 242 (442)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~L~~L~ls~N~l~~~~p~~ 242 (442)
|++++ +|.. .++|++|++++|.++ .+|. +..+++|++|++++|++++....+ -.|+.|++++|.+++ +|..
T Consensus 205 N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~N~l~~-l~~~ 275 (454)
T 1jl5_A 205 NSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDLP--PSLEALNVRDNYLTD-LPEL 275 (454)
T ss_dssp SCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSCC--TTCCEEECCSSCCSC-CCCC
T ss_pred CcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCcccccc--cccCEEECCCCcccc-cCcc
Confidence 87775 3332 247778888888777 5663 777888888888888877643221 127777777777765 5555
Q ss_pred ccccccccccCCcCCC
Q 013460 243 LISIRTFIYDGNSFDN 258 (442)
Q Consensus 243 ~~~l~~l~~~~n~~~~ 258 (442)
+.+++.|++++|.+..
T Consensus 276 ~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CTTCCEEECCSSCCSE
T ss_pred cCcCCEEECcCCccCc
Confidence 5667777777776654
No 106
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=6.9e-16 Score=154.23 Aligned_cols=162 Identities=22% Similarity=0.250 Sum_probs=82.4
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEccc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR 162 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (442)
.++++|+|++|.+++. | +..+++|++|++++|.+++. +..-.++|++|++++|.+++ +| +..+++|++|++++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~ 136 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCAR 136 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTT
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCC
Confidence 4566666666666553 2 55555666666666665543 21111555555555555554 22 45555555555555
Q ss_pred CcCCCc---------------------hhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCC
Q 013460 163 NSLTQS---------------------IGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFS 221 (442)
Q Consensus 163 n~l~~~---------------------~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 221 (442)
|++++. + .+..+++|++|++++|++++ +| +..+++|+.|++++|++++. .+.
T Consensus 137 N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--~l~ 209 (457)
T 3bz5_A 137 NTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--DLN 209 (457)
T ss_dssp SCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC--CCT
T ss_pred CccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee--ccc
Confidence 555542 2 13344445555555555543 22 44445555555555555443 234
Q ss_pred CCC-ccEEEeecccCcccCChhccccccccccCCcCCC
Q 013460 222 GLP-LTTLNVANNHFSGWIPRELISIRTFIYDGNSFDN 258 (442)
Q Consensus 222 ~l~-L~~L~ls~N~l~~~~p~~~~~l~~l~~~~n~~~~ 258 (442)
.++ |+.|++++|.+++.....+.+++.|++++|.+..
T Consensus 210 ~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 210 QNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp TCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC
T ss_pred cCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCC
Confidence 444 6666666666655322334455556666665553
No 107
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=6.6e-16 Score=154.40 Aligned_cols=143 Identities=22% Similarity=0.233 Sum_probs=110.3
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
..+++.|++++|.+++. | .+..+++|++|+|++|.+++. |..-.++|++|++++|.+++. + +.++++|++|+++
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD 114 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-ccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC
Confidence 37899999999999975 4 699999999999999999974 433239999999999999975 3 8899999999999
Q ss_pred cCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCccCCCCC-ccEEEeecccCcc
Q 013460 162 RNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLNVFSGLP-LTTLNVANNHFSG 237 (442)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~ls~N~l~~ 237 (442)
+|++++. | +..+++|++|++++|++++. + +..+++|+.|++++|+..+.+ .+..++ |+.|++++|.+++
T Consensus 115 ~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 115 TNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp SSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC
T ss_pred CCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccce
Confidence 9999974 4 88999999999999999863 2 566666666666666444333 233333 4455555544444
No 108
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=4.5e-16 Score=135.00 Aligned_cols=137 Identities=20% Similarity=0.277 Sum_probs=112.9
Q ss_pred CCCCCCCccEEecCCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCcc
Q 013460 69 DPCGESWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLP 146 (442)
Q Consensus 69 ~~c~~~w~gv~c~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p 146 (442)
+.|.+.|.++.|.. +++.. +|..+ .++|++|++++|++++..+..+. ++|++|+|++|.+++..+
T Consensus 3 ~~C~C~~~~l~~~~----------~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (177)
T 2o6r_A 3 SRCSCSGTEIRCNS----------KGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69 (177)
T ss_dssp TTCEEETTEEECCS----------SCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CCCEeCCCEEEecC----------CCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh
Confidence 34545677776654 44443 33322 36899999999999976666555 899999999999997777
Q ss_pred ccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc
Q 013460 147 YSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN 218 (442)
Q Consensus 147 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 218 (442)
..+..+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|.+.+..+
T Consensus 70 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 778999999999999999998888888999999999999999997666667899999999999999987654
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=1.2e-16 Score=154.39 Aligned_cols=189 Identities=19% Similarity=0.157 Sum_probs=142.5
Q ss_pred CCCCCccEEecC-----------CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCc-c--CCCc-EEE
Q 013460 71 CGESWKGVACEG-----------SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQL-P--PNLT-SLN 135 (442)
Q Consensus 71 c~~~w~gv~c~~-----------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~--~~L~-~L~ 135 (442)
|.|+|..|.|+. .++++|+|++|+|+...+..|.++++|++|+|++|.+.+.+|... . ++|+ .+.
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 655888999974 368899999999997777789999999999999999987777543 3 5555 467
Q ss_pred ccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCC-CCCCCCCchhccCCC-CCCEEEcccCcC
Q 013460 136 LASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSF-NNFSGDLPNSFISLS-NISSLYLQNNQV 213 (442)
Q Consensus 136 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~-~L~~L~Ls~N~l 213 (442)
+..|+++...|..|..+++|++|++++|++....+..+....++..|++.+ |++....+..|..+. .++.|+|++|+|
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 788999988888999999999999999999877666666667778888865 456644444555554 578888888888
Q ss_pred CccCccCCC-CCccEEEeecccCcccCCh----hccccccccccCCcCCCC
Q 013460 214 TGSLNVFSG-LPLTTLNVANNHFSGWIPR----ELISIRTFIYDGNSFDNG 259 (442)
Q Consensus 214 ~~~~~~~~~-l~L~~L~ls~N~l~~~~p~----~~~~l~~l~~~~n~~~~~ 259 (442)
+...+.... ..|+.|++++|+..+.+|. .+.+|+.|++++|.+...
T Consensus 167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 876654333 3488888875443344553 345677888888888644
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=9.5e-17 Score=135.15 Aligned_cols=125 Identities=22% Similarity=0.228 Sum_probs=80.4
Q ss_pred CcEEEEEeCCCCCC-cccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 83 SAVVSIDISGLGLS-GTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 83 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
.+++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+. ++|++|+|++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 46777777777776 66677777777777777777777654 2232 6666666666666655666655666666666
Q ss_pred cccCcCCCc-hhhhhcCCCCCcEEeCCCCCCCCCCc---hhccCCCCCCEEEcc
Q 013460 160 VSRNSLTQS-IGDIFGNLAGLATLDLSFNNFSGDLP---NSFISLSNISSLYLQ 209 (442)
Q Consensus 160 L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls 209 (442)
+++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666653 23556666666666666666664443 355666666666654
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=1.9e-17 Score=174.67 Aligned_cols=140 Identities=24% Similarity=0.226 Sum_probs=106.6
Q ss_pred ccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcC
Q 013460 98 TMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGN 175 (442)
Q Consensus 98 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 175 (442)
..+..+..+..|+.|+|++|.+. .+|..+. ++|++|+|++|.|+ .+|..|.++++|++|+|++|+|+ .+|..|..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 44778888999999999999988 5665554 88999999999999 88888999999999999999998 67888999
Q ss_pred CCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC--ccEEEeecccCcccCCh
Q 013460 176 LAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP--LTTLNVANNHFSGWIPR 241 (442)
Q Consensus 176 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~--L~~L~ls~N~l~~~~p~ 241 (442)
+++|++|+|++|.|+ .+|..|..+++|+.|+|++|.|++.++ .+..+. +..|+|++|.+++.+|.
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 999999999999997 778889999999999999999987665 222221 22345555555555554
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=2e-16 Score=133.11 Aligned_cols=124 Identities=22% Similarity=0.217 Sum_probs=84.0
Q ss_pred CCCCCEEEccCCCCC-CCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEE
Q 013460 106 LLSLRKFDLSGNSIH-DTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATL 182 (442)
Q Consensus 106 l~~L~~L~l~~n~l~-~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 182 (442)
.++|+.|++++|.++ +.+|..+. ++|++|++++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356777888887777 56665544 7777777777777754 566677777777777777776667666667777777
Q ss_pred eCCCCCCCCC-CchhccCCCCCCEEEcccCcCCccCc----cCCCCC-ccEEEee
Q 013460 183 DLSFNNFSGD-LPNSFISLSNISSLYLQNNQVTGSLN----VFSGLP-LTTLNVA 231 (442)
Q Consensus 183 ~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~l~-L~~L~ls 231 (442)
++++|.+++. .+..+..+++|++|++++|.+++..+ .+..++ |+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777642 23667777777777777777766544 344444 6666554
No 113
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=2.6e-17 Score=157.80 Aligned_cols=172 Identities=17% Similarity=0.248 Sum_probs=113.3
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCC-CCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEE
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDT-IPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLN 159 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 159 (442)
.+++.|++++|.+.+..+. +..+++|++|+|++|.+++. ++..+. ++|++|+|++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5677777777777766554 44677777777777777644 443333 6777777777777766777777777777777
Q ss_pred cccC-cCCCc-hhhhhcCCCCCcEEeCCCC-CCCCC-CchhccCCC-CCCEEEcccC--cCC-ccC-ccCCCCC-ccEEE
Q 013460 160 VSRN-SLTQS-IGDIFGNLAGLATLDLSFN-NFSGD-LPNSFISLS-NISSLYLQNN--QVT-GSL-NVFSGLP-LTTLN 229 (442)
Q Consensus 160 L~~n-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~-~L~~L~Ls~N--~l~-~~~-~~~~~l~-L~~L~ 229 (442)
|++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+ ..+..++ |+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 7777 56652 5566677777777777777 77643 456667777 7777777777 444 222 2344455 77777
Q ss_pred eeccc-CcccCChh---ccccccccccCCc
Q 013460 230 VANNH-FSGWIPRE---LISIRTFIYDGNS 255 (442)
Q Consensus 230 ls~N~-l~~~~p~~---~~~l~~l~~~~n~ 255 (442)
+++|. +++..+.. +.+|+.|++++|.
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 77777 55544433 3456666677664
No 114
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.64 E-value=2.2e-15 Score=150.51 Aligned_cols=161 Identities=25% Similarity=0.375 Sum_probs=95.6
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEccc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR 162 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (442)
.+++.|++++|.+++ +|.. +++|++|++++|.+++ ++. +.++|++|++++|.+++ +| .+.++++|++|++++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~-~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD-LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS-CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC-CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCC
Confidence 567777777777776 4432 3567777777777764 221 22567777777777764 55 466777777777777
Q ss_pred CcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCcc-------------------CccCCCC
Q 013460 163 NSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGS-------------------LNVFSGL 223 (442)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-------------------~~~~~~l 223 (442)
|++++ +|.. ..+|++|++++|++++ +| .+..+++|++|++++|++++. ++.+..+
T Consensus 163 N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l 236 (454)
T 1jl5_A 163 NSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 236 (454)
T ss_dssp SCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTC
T ss_pred CcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccccCCC
Confidence 77664 3332 2466666666666664 44 355666666666666655542 2234444
Q ss_pred C-ccEEEeecccCcccCChhccccccccccCCcCCC
Q 013460 224 P-LTTLNVANNHFSGWIPRELISIRTFIYDGNSFDN 258 (442)
Q Consensus 224 ~-L~~L~ls~N~l~~~~p~~~~~l~~l~~~~n~~~~ 258 (442)
+ |++|++++|.+++ +|..+.+++.|++++|.+..
T Consensus 237 ~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 237 PFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTD 271 (454)
T ss_dssp TTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSC
T ss_pred CCCCEEECCCCcCCc-ccccccccCEEECCCCcccc
Confidence 4 6666666666654 34444556666666665543
No 115
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=1.1e-16 Score=153.50 Aligned_cols=172 Identities=24% Similarity=0.268 Sum_probs=126.3
Q ss_pred CcEEEEEeCCCCCCcc-cchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCC-cCCCC-ccccccCCCCCCE
Q 013460 83 SAVVSIDISGLGLSGT-MGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASN-NFSGN-LPYSIASMVSLSY 157 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~ 157 (442)
.+++.|+|++|.+.+. ++..+..+++|++|+|++|.+++..+..+. ++|++|+|++| .+++. ++..+..+++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 6788888888888765 777888888888888888888766665554 78888888888 67653 6666778888888
Q ss_pred EEcccC-cCCCc-hhhhhcCCC-CCcEEeCCCC--CCC-CCCchhccCCCCCCEEEcccCc-CCc-cCccCCCCC-ccEE
Q 013460 158 LNVSRN-SLTQS-IGDIFGNLA-GLATLDLSFN--NFS-GDLPNSFISLSNISSLYLQNNQ-VTG-SLNVFSGLP-LTTL 228 (442)
Q Consensus 158 L~L~~n-~l~~~-~p~~~~~l~-~L~~L~Ls~N--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~-~~~~~~~l~-L~~L 228 (442)
|++++| .+++. ++..+..++ +|++|+|++| .++ +.+|..+..+++|+.|++++|. +++ .++.+..++ |+.|
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence 888888 88754 566777788 8888888888 455 4566677778888888888888 554 334566666 8888
Q ss_pred Eeeccc-CcccC---ChhccccccccccCC
Q 013460 229 NVANNH-FSGWI---PRELISIRTFIYDGN 254 (442)
Q Consensus 229 ~ls~N~-l~~~~---p~~~~~l~~l~~~~n 254 (442)
++++|. +.... -..+.+|+.|++.+|
T Consensus 253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred eCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 888884 32221 123556677777776
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=4.5e-17 Score=159.41 Aligned_cols=175 Identities=21% Similarity=0.218 Sum_probs=98.7
Q ss_pred CcEEEEEeCCCC---CCcccchhc-------cCCCCCCEEEccCCCCCCC----CCCCcc--CCCcEEEccCCcCCCCcc
Q 013460 83 SAVVSIDISGLG---LSGTMGYLL-------SDLLSLRKFDLSGNSIHDT----IPYQLP--PNLTSLNLASNNFSGNLP 146 (442)
Q Consensus 83 ~~l~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~l~~n~l~~~----~p~~~~--~~L~~L~Ls~n~l~~~~p 146 (442)
.+|+.|+|++|. +.+.+|..+ ..+++|++|+|++|.+.+. ++..+. ++|++|+|++|.++...+
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 139 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence 456666666643 334444333 5666666666666666652 333333 666666666666653333
Q ss_pred cccc----CC---------CCCCEEEcccCcCC-Cchh---hhhcCCCCCcEEeCCCCCCCC-----CCchhccCCCCCC
Q 013460 147 YSIA----SM---------VSLSYLNVSRNSLT-QSIG---DIFGNLAGLATLDLSFNNFSG-----DLPNSFISLSNIS 204 (442)
Q Consensus 147 ~~~~----~l---------~~L~~L~L~~n~l~-~~~p---~~~~~l~~L~~L~Ls~N~l~~-----~~p~~l~~l~~L~ 204 (442)
..+. .+ ++|++|+|++|+++ +.++ ..+..+++|++|+|++|+++. .+|..+..+++|+
T Consensus 140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~ 219 (386)
T 2ca6_A 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC
T ss_pred HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc
Confidence 2222 22 66666666666665 3333 345566667777777776652 2333556666777
Q ss_pred EEEcccCcCC----ccC-ccCCCCC-ccEEEeecccCccc----CChh-----ccccccccccCCcCC
Q 013460 205 SLYLQNNQVT----GSL-NVFSGLP-LTTLNVANNHFSGW----IPRE-----LISIRTFIYDGNSFD 257 (442)
Q Consensus 205 ~L~Ls~N~l~----~~~-~~~~~l~-L~~L~ls~N~l~~~----~p~~-----~~~l~~l~~~~n~~~ 257 (442)
.|+|++|.++ ..+ ..+..++ |+.|+|++|.+++. ++.. +.+++.|++++|.+.
T Consensus 220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 7777777664 222 2444555 77777777776654 3332 355666667776665
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=1.5e-17 Score=170.29 Aligned_cols=152 Identities=18% Similarity=0.212 Sum_probs=97.0
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCC-------------CCCCCCCCcc---------------------
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNS-------------IHDTIPYQLP--------------------- 128 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~p~~~~--------------------- 128 (442)
.+++.|+|++|.+. .+|..++++++|+.|++++|. +.+..|..+.
T Consensus 349 ~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 349 EQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 45567788888775 678888888888888887664 3333332211
Q ss_pred -------------CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCch
Q 013460 129 -------------PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPN 195 (442)
Q Consensus 129 -------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 195 (442)
..|+.|+|++|.+++ +|. +..+++|+.|+|++|+|+ .+|..++.+++|++|+|++|+|++ +|
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp- 502 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD- 502 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-
T ss_pred hhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-
Confidence 245666666666664 454 666666666666666666 456666666666666666666664 45
Q ss_pred hccCCCCCCEEEcccCcCCcc--CccCCCCC-ccEEEeecccCcccCC
Q 013460 196 SFISLSNISSLYLQNNQVTGS--LNVFSGLP-LTTLNVANNHFSGWIP 240 (442)
Q Consensus 196 ~l~~l~~L~~L~Ls~N~l~~~--~~~~~~l~-L~~L~ls~N~l~~~~p 240 (442)
.+..+++|+.|+|++|+|++. +..+..++ |+.|+|++|.+++.+|
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 566666666666666666665 33555565 6666666666665544
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=3e-15 Score=131.74 Aligned_cols=125 Identities=26% Similarity=0.269 Sum_probs=109.8
Q ss_pred EEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCc
Q 013460 87 SIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNS 164 (442)
Q Consensus 87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 164 (442)
.+++++++++. +|..+. ++|++|+|++|.|+ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|+
T Consensus 14 ~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 56778888774 444442 58999999999998 5666665 899999999999998888899999999999999999
Q ss_pred CCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCc
Q 013460 165 LTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTG 215 (442)
Q Consensus 165 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 215 (442)
+++..|..|..+++|++|+|++|.|++..+..|..+++|+.|+|++|.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 999888899999999999999999997666679999999999999999864
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=4.4e-17 Score=158.12 Aligned_cols=172 Identities=24% Similarity=0.284 Sum_probs=79.3
Q ss_pred cEEEEEeCCCCCCcccchhccCC-----CCCCEEEccCCCCCCCCCCCcc-------CCCcEEEccCCcCCCCcccccc-
Q 013460 84 AVVSIDISGLGLSGTMGYLLSDL-----LSLRKFDLSGNSIHDTIPYQLP-------PNLTSLNLASNNFSGNLPYSIA- 150 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~-------~~L~~L~Ls~n~l~~~~p~~~~- 150 (442)
++++|+|++|.+.+..+..+..+ ++|++|+|++|.+++..+..+. ++|++|+|++|.+++..+..+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 45555555555554444434332 5555555555555543332111 3455555555555544333322
Q ss_pred ---C-CCCCCEEEcccCcCCCc----hhhhhcCCC-CCcEEeCCCCCCCCCCchhc----cCC-CCCCEEEcccCcCCcc
Q 013460 151 ---S-MVSLSYLNVSRNSLTQS----IGDIFGNLA-GLATLDLSFNNFSGDLPNSF----ISL-SNISSLYLQNNQVTGS 216 (442)
Q Consensus 151 ---~-l~~L~~L~L~~n~l~~~----~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~~ 216 (442)
. .++|++|+|++|+++.. ++..+..++ +|++|+|++|++++..+..+ ..+ ++|++|+|++|.+++.
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 2 13555555555555532 222333333 55555555555554444322 223 3555555555555441
Q ss_pred -----CccCCC-C-CccEEEeecccCcccCC-------hhccccccccccCCc
Q 013460 217 -----LNVFSG-L-PLTTLNVANNHFSGWIP-------RELISIRTFIYDGNS 255 (442)
Q Consensus 217 -----~~~~~~-l-~L~~L~ls~N~l~~~~p-------~~~~~l~~l~~~~n~ 255 (442)
...+.. . .|+.|+|++|.+++..+ ..+.+++.|++++|.
T Consensus 212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 112222 1 15555555555554332 223445555555554
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=1.1e-16 Score=155.31 Aligned_cols=176 Identities=21% Similarity=0.270 Sum_probs=137.2
Q ss_pred CcEEEEEeCCCCCCcccc----hhccCCC-CCCEEEccCCCCCCCCCCCcc-------CCCcEEEccCCcCCCCcccccc
Q 013460 83 SAVVSIDISGLGLSGTMG----YLLSDLL-SLRKFDLSGNSIHDTIPYQLP-------PNLTSLNLASNNFSGNLPYSIA 150 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~p~~~~-------~~L~~L~Ls~n~l~~~~p~~~~ 150 (442)
.+++.|+|++|.+.+..+ ..+..++ +|++|+|++|.+++..+..+. ++|++|+|++|.+++..+..+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 569999999999987766 7888888 899999999999876654432 6899999999999977766444
Q ss_pred ----CC-CCCCEEEcccCcCCCchhhhh----cC-CCCCcEEeCCCCCCCCCCc----hhccCCC-CCCEEEcccCcCCc
Q 013460 151 ----SM-VSLSYLNVSRNSLTQSIGDIF----GN-LAGLATLDLSFNNFSGDLP----NSFISLS-NISSLYLQNNQVTG 215 (442)
Q Consensus 151 ----~l-~~L~~L~L~~n~l~~~~p~~~----~~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~ 215 (442)
.+ ++|++|+|++|++++..+..+ .. ..+|++|+|++|.+++..+ ..+..++ +|++|+|++|++++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 44 899999999999987766554 33 3699999999999986444 3445665 99999999999987
Q ss_pred cCc-----cCCCC-C-ccEEEeecccCccc----CChhc----cccccccccCCcCCC
Q 013460 216 SLN-----VFSGL-P-LTTLNVANNHFSGW----IPREL----ISIRTFIYDGNSFDN 258 (442)
Q Consensus 216 ~~~-----~~~~l-~-L~~L~ls~N~l~~~----~p~~~----~~l~~l~~~~n~~~~ 258 (442)
..+ .+... . |+.|+|++|.+.+. ++..+ .+++.|++++|.+..
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 553 23344 3 99999999999873 33332 478899999998864
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.60 E-value=6.9e-15 Score=151.82 Aligned_cols=74 Identities=26% Similarity=0.458 Sum_probs=33.4
Q ss_pred cEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcccC
Q 013460 84 AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRN 163 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 163 (442)
+++.|++++|+++ .+|..+. ++|++|+|++|.|+ .+|. ..++|++|+|++|.++ .+|. .+++|++|+|++|
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~-~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA-LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC-CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC-cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCC
Confidence 4555555555554 3333332 44555555555554 2332 2244555555555544 2332 3344444444444
Q ss_pred cCC
Q 013460 164 SLT 166 (442)
Q Consensus 164 ~l~ 166 (442)
+++
T Consensus 112 ~l~ 114 (622)
T 3g06_A 112 PLT 114 (622)
T ss_dssp CCC
T ss_pred cCC
Confidence 444
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=1.5e-15 Score=131.65 Aligned_cols=130 Identities=18% Similarity=0.244 Sum_probs=87.2
Q ss_pred ccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCc
Q 013460 103 LSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLA 180 (442)
Q Consensus 103 ~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 180 (442)
+.++.+|+.|++++|.++.. +.... ++|++|+|++|.+++. ..+..+++|++|+|++|++++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 45566677777777776632 32222 3777777777777643 5667777778888888877765445557777788
Q ss_pred EEeCCCCCCCCCCch--hccCCCCCCEEEcccCcCCccCcc----CCCCC-ccEEEeecccCc
Q 013460 181 TLDLSFNNFSGDLPN--SFISLSNISSLYLQNNQVTGSLNV----FSGLP-LTTLNVANNHFS 236 (442)
Q Consensus 181 ~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~~~----~~~l~-L~~L~ls~N~l~ 236 (442)
+|+|++|.++ .+|. .+..+++|+.|++++|.++..... +..++ |+.||+++|.+.
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888888775 4555 677777788888888777654432 55555 777777777654
No 123
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.58 E-value=1.3e-14 Score=149.67 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=14.5
Q ss_pred cEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCC
Q 013460 84 AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIH 120 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 120 (442)
+|+.|+|++|.+++ +|. .+++|++|+|++|.++
T Consensus 82 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 82 ELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp TCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC
T ss_pred CCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC
Confidence 44455555554442 222 3344444444444444
No 124
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.58 E-value=1.4e-14 Score=124.79 Aligned_cols=107 Identities=24% Similarity=0.356 Sum_probs=82.1
Q ss_pred CEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCC
Q 013460 110 RKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNF 189 (442)
Q Consensus 110 ~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 189 (442)
+.|++++|.++ .+|..+.++|++|+|++|.|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TEEECTTSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcC-ccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 34555555555 25555557777788888888777777888888888888888888877777778888888899988888
Q ss_pred CCCCchhccCCCCCCEEEcccCcCCccC
Q 013460 190 SGDLPNSFISLSNISSLYLQNNQVTGSL 217 (442)
Q Consensus 190 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 217 (442)
++..+..|..+++|++|+|++|.+....
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 8766667888888888888888887543
No 125
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.55 E-value=3e-14 Score=123.07 Aligned_cols=106 Identities=24% Similarity=0.321 Sum_probs=81.5
Q ss_pred EEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCC
Q 013460 111 KFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFS 190 (442)
Q Consensus 111 ~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 190 (442)
.+++++|.++ .+|..+.++|++|+|++|.|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp EEECCSSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEeCCCCCC-ccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence 4555555553 455555577778888888887777778888888999999999888776666788888999999999888
Q ss_pred CCCchhccCCCCCCEEEcccCcCCccC
Q 013460 191 GDLPNSFISLSNISSLYLQNNQVTGSL 217 (442)
Q Consensus 191 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 217 (442)
+..+..|..+++|++|+|++|.+....
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred eeCHHHhccccCCCEEEeCCCCccccc
Confidence 665556888888888888888887543
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=4.6e-17 Score=144.05 Aligned_cols=130 Identities=25% Similarity=0.290 Sum_probs=98.0
Q ss_pred cEEEEEeCCCCCCcccch------hccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCC
Q 013460 84 AVVSIDISGLGLSGTMGY------LLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSL 155 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L 155 (442)
.++.++++++.+.+..|. .+..+++|++|+|++|.+++ +| .+. ++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 444445555555555554 88888999999999998886 55 454 88888888888888 567777777888
Q ss_pred CEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCc-hhccCCCCCCEEEcccCcCCccCc
Q 013460 156 SYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLP-NSFISLSNISSLYLQNNQVTGSLN 218 (442)
Q Consensus 156 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~~ 218 (442)
++|+|++|++++ +| .+..+++|++|+|++|++++..+ ..+..+++|++|++++|.+++.++
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 888888888886 44 57788888888888888884322 467788888888888888876543
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.9e-14 Score=124.62 Aligned_cols=128 Identities=20% Similarity=0.222 Sum_probs=107.7
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNV 160 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (442)
.+++.|++++|++... +......++|++|+|++|.+++. ..+. ++|++|+|++|.+++..+..+..+++|++|+|
T Consensus 19 ~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 6899999999999954 54333344999999999999976 3444 89999999999999654455689999999999
Q ss_pred ccCcCCCchhh--hhcCCCCCcEEeCCCCCCCCCCchh----ccCCCCCCEEEcccCcCCc
Q 013460 161 SRNSLTQSIGD--IFGNLAGLATLDLSFNNFSGDLPNS----FISLSNISSLYLQNNQVTG 215 (442)
Q Consensus 161 ~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~ 215 (442)
++|+++. +|. .+..+++|++|++++|.++ .+|.. +..+++|+.||+++|.+..
T Consensus 96 ~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 96 TNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999964 555 7889999999999999998 55664 8899999999999998765
No 128
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.52 E-value=1.4e-15 Score=152.20 Aligned_cols=174 Identities=20% Similarity=0.216 Sum_probs=136.6
Q ss_pred cEEEEEeCCCCCCc----ccchhccCCCCCCEEEccCCCCCCCCCCCcc-------CCCcEEEccCCcCCCC----cccc
Q 013460 84 AVVSIDISGLGLSG----TMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP-------PNLTSLNLASNNFSGN----LPYS 148 (442)
Q Consensus 84 ~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-------~~L~~L~Ls~n~l~~~----~p~~ 148 (442)
++++|+|++|.+.. .++..+..+++|++|+|++|.+++..+..+. ++|++|+|++|.+++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 69999999999984 6788999999999999999998754333222 4799999999999864 3566
Q ss_pred ccCCCCCCEEEcccCcCCCchhhhhc-----CCCCCcEEeCCCCCCCCC----CchhccCCCCCCEEEcccCcCCccC--
Q 013460 149 IASMVSLSYLNVSRNSLTQSIGDIFG-----NLAGLATLDLSFNNFSGD----LPNSFISLSNISSLYLQNNQVTGSL-- 217 (442)
Q Consensus 149 ~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~-- 217 (442)
+..+++|++|+|++|.++...+..+. .+++|++|+|++|.+++. ++..+..+++|++|++++|.+++..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 77789999999999998865555443 366999999999999864 5777888899999999999987631
Q ss_pred ---c-cCCCCC-ccEEEeecccCccc----CChh---ccccccccccCCcCC
Q 013460 218 ---N-VFSGLP-LTTLNVANNHFSGW----IPRE---LISIRTFIYDGNSFD 257 (442)
Q Consensus 218 ---~-~~~~l~-L~~L~ls~N~l~~~----~p~~---~~~l~~l~~~~n~~~ 257 (442)
+ .+..++ |+.|++++|.+++. ++.. +.+++.|++++|.+.
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 2 223455 99999999988864 4443 567888888888774
No 129
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.51 E-value=5.6e-16 Score=155.07 Aligned_cols=174 Identities=17% Similarity=0.182 Sum_probs=97.5
Q ss_pred cEEEEEeCCCCCCcc----cchhccCCCCCCEEEccCCCCCCCCC----CCc---cCCCcEEEccCCcCCCC----cccc
Q 013460 84 AVVSIDISGLGLSGT----MGYLLSDLLSLRKFDLSGNSIHDTIP----YQL---PPNLTSLNLASNNFSGN----LPYS 148 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p----~~~---~~~L~~L~Ls~n~l~~~----~p~~ 148 (442)
+++.|+|++|.+++. ++..+..+++|++|++++|.+++... ..+ .++|++|++++|.++.. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 555566666555542 34555556666666666666553211 111 15666666666666643 4555
Q ss_pred ccCCCCCCEEEcccCcCCCchhhhhcC-----CCCCcEEeCCCCCCCCC----CchhccCCCCCCEEEcccCcCCccC-c
Q 013460 149 IASMVSLSYLNVSRNSLTQSIGDIFGN-----LAGLATLDLSFNNFSGD----LPNSFISLSNISSLYLQNNQVTGSL-N 218 (442)
Q Consensus 149 ~~~l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~-~ 218 (442)
+..+++|++|+|++|.+++..+..+.. .++|++|+|++|.+++. ++..+..+++|++|+|++|.+++.. .
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 555666666666666665443333322 24666666666666644 3455556677777777777765532 1
Q ss_pred ----cCCC-CC-ccEEEeecccCcc----cCChh---ccccccccccCCcCC
Q 013460 219 ----VFSG-LP-LTTLNVANNHFSG----WIPRE---LISIRTFIYDGNSFD 257 (442)
Q Consensus 219 ----~~~~-l~-L~~L~ls~N~l~~----~~p~~---~~~l~~l~~~~n~~~ 257 (442)
.+.. .+ |+.|++++|.+++ .+|.. +.+++.|++++|.+.
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 1111 23 7777777777764 44433 455666777777664
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=6.9e-14 Score=143.18 Aligned_cols=118 Identities=24% Similarity=0.321 Sum_probs=103.3
Q ss_pred CCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCC
Q 013460 108 SLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLS 185 (442)
Q Consensus 108 ~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 185 (442)
.|+.|+|++|.|++ +|. +. ++|+.|+|++|.|+ .+|..++++++|+.|+|++|+|++ +| .+..+++|++|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 57889999999997 565 55 89999999999999 889999999999999999999997 56 79999999999999
Q ss_pred CCCCCCCC-chhccCCCCCCEEEcccCcCCccCccCCC----CC-ccEEEe
Q 013460 186 FNNFSGDL-PNSFISLSNISSLYLQNNQVTGSLNVFSG----LP-LTTLNV 230 (442)
Q Consensus 186 ~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~----l~-L~~L~l 230 (442)
+|+|++.. |..+..+++|+.|+|++|++++.++.... ++ |+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999876 99999999999999999999998764332 44 777653
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=4e-14 Score=136.59 Aligned_cols=173 Identities=17% Similarity=0.170 Sum_probs=139.4
Q ss_pred CCcEEEEEeCCCCCCcccc-hhccCCCCCCE-EEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCE
Q 013460 82 GSAVVSIDISGLGLSGTMG-YLLSDLLSLRK-FDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSY 157 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 157 (442)
..+|+.|+|++|.+.+.+| ..|.+++++++ +.+..|+++...|..+. ++|++|++++|.++...+..+....++..
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 132 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhh
Confidence 4789999999999987665 47889998775 67778999987777776 89999999999999777767777888899
Q ss_pred EEccc-CcCCCchhhhhcCCC-CCcEEeCCCCCCCCCCchhccCCCCCCEEEccc-CcCCccCc-cCCCCC-ccEEEeec
Q 013460 158 LNVSR-NSLTQSIGDIFGNLA-GLATLDLSFNNFSGDLPNSFISLSNISSLYLQN-NQVTGSLN-VFSGLP-LTTLNVAN 232 (442)
Q Consensus 158 L~L~~-n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~~-~~~~l~-L~~L~ls~ 232 (442)
|++.+ |++....+..|..+. .++.|+|++|+|+ .+|.......+|+.|++++ |.++...+ .|..++ |+.|||++
T Consensus 133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred hhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence 99966 567765556676664 6899999999999 5666666778899999986 55665554 577887 99999999
Q ss_pred ccCcccCChhccccccccccCCc
Q 013460 233 NHFSGWIPRELISIRTFIYDGNS 255 (442)
Q Consensus 233 N~l~~~~p~~~~~l~~l~~~~n~ 255 (442)
|.|+...+..+.+++.|...++.
T Consensus 212 N~l~~lp~~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 212 TRIHSLPSYGLENLKKLRARSTY 234 (350)
T ss_dssp SCCCCCCSSSCTTCCEEECTTCT
T ss_pred CCcCccChhhhccchHhhhccCC
Confidence 99997666778888888866553
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.6e-13 Score=118.01 Aligned_cols=108 Identities=23% Similarity=0.325 Sum_probs=95.6
Q ss_pred CCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcc
Q 013460 130 NLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQ 209 (442)
Q Consensus 130 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 209 (442)
..+.|++++|.++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4678999999998 5776653 889999999999999889999999999999999999997777778999999999999
Q ss_pred cCcCCccCc-cCCCCC-ccEEEeecccCcccCC
Q 013460 210 NNQVTGSLN-VFSGLP-LTTLNVANNHFSGWIP 240 (442)
Q Consensus 210 ~N~l~~~~~-~~~~l~-L~~L~ls~N~l~~~~p 240 (442)
+|+|++.++ .+..++ |+.|+|++|.+....+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998876 578887 9999999999986543
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=2.8e-13 Score=117.02 Aligned_cols=106 Identities=22% Similarity=0.291 Sum_probs=92.5
Q ss_pred CCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcc
Q 013460 130 NLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQ 209 (442)
Q Consensus 130 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 209 (442)
.-+.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 13 ~~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 13 DQTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp CSSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 3478999999997 6777664 899999999999999889999999999999999999997666667899999999999
Q ss_pred cCcCCccCcc-CCCCC-ccEEEeecccCccc
Q 013460 210 NNQVTGSLNV-FSGLP-LTTLNVANNHFSGW 238 (442)
Q Consensus 210 ~N~l~~~~~~-~~~l~-L~~L~ls~N~l~~~ 238 (442)
+|+|++.++. +..++ |+.|+|++|.+...
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999987764 77787 99999999998754
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=2.7e-16 Score=139.07 Aligned_cols=134 Identities=25% Similarity=0.337 Sum_probs=115.7
Q ss_pred ccCCCCCCEEEccCCCCCCCCCC------Ccc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhc
Q 013460 103 LSDLLSLRKFDLSGNSIHDTIPY------QLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFG 174 (442)
Q Consensus 103 ~~~l~~L~~L~l~~n~l~~~~p~------~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 174 (442)
+.....++.++++.+.+.+.+|. .+. ++|++|+|++|.+++ +| .+..+++|++|+|++|+++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 55667888889999999988776 454 899999999999996 66 8899999999999999998 5677788
Q ss_pred CCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccC--ccCCCCC-ccEEEeecccCcccCCh
Q 013460 175 NLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSL--NVFSGLP-LTTLNVANNHFSGWIPR 241 (442)
Q Consensus 175 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~l~-L~~L~ls~N~l~~~~p~ 241 (442)
.+++|++|+|++|++++ +| .+..+++|++|++++|++++.. +.+..++ |++|++++|.+.+.+|.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 88999999999999995 55 6889999999999999999754 3677887 99999999999887654
No 135
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=3.3e-14 Score=137.96 Aligned_cols=159 Identities=15% Similarity=0.177 Sum_probs=118.4
Q ss_pred CcEEEEEeCCCCCCcccchh----cc-CCCCCCEEEccCCCCCCCCCCCcc---CCCcEEEccCCcCCCCccccc-----
Q 013460 83 SAVVSIDISGLGLSGTMGYL----LS-DLLSLRKFDLSGNSIHDTIPYQLP---PNLTSLNLASNNFSGNLPYSI----- 149 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~----~~-~l~~L~~L~l~~n~l~~~~p~~~~---~~L~~L~Ls~n~l~~~~p~~~----- 149 (442)
.+++.|+|++|.++...... +. ..++|+.|+|++|.+++.....+. ++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 57899999999998643333 33 236899999999998754333333 789999999999985544444
Q ss_pred cCCCCCCEEEcccCcCCCc----hhhhhcCCCCCcEEeCCCCCCCCC----CchhccCCCCCCEEEcccCcCCccC----
Q 013460 150 ASMVSLSYLNVSRNSLTQS----IGDIFGNLAGLATLDLSFNNFSGD----LPNSFISLSNISSLYLQNNQVTGSL---- 217 (442)
Q Consensus 150 ~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~---- 217 (442)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.|+.. ++..+...++|+.|+|++|.+++..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 3468899999999998753 445567889999999999998753 3556777889999999999997532
Q ss_pred -ccCCCCC-ccEEEeecccCcccCCh
Q 013460 218 -NVFSGLP-LTTLNVANNHFSGWIPR 241 (442)
Q Consensus 218 -~~~~~l~-L~~L~ls~N~l~~~~p~ 241 (442)
..+...+ |+.|+|++|.|+..-..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~ 257 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQ 257 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHH
Confidence 1233344 99999999998754433
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=2.9e-12 Score=123.21 Aligned_cols=101 Identities=22% Similarity=0.289 Sum_probs=57.7
Q ss_pred EEEccCC-CCCCCCCCCcc--CCCcEEEccC-CcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCC
Q 013460 111 KFDLSGN-SIHDTIPYQLP--PNLTSLNLAS-NNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSF 186 (442)
Q Consensus 111 ~L~l~~n-~l~~~~p~~~~--~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 186 (442)
.++++++ +|+. +|. +. ++|+.|+|++ |.|++..+..|.++++|++|+|++|+|++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566665 5653 444 44 4566666664 666655555566666666666666666665555566666666666666
Q ss_pred CCCCCCCchhccCCCCCCEEEcccCcCC
Q 013460 187 NNFSGDLPNSFISLSNISSLYLQNNQVT 214 (442)
Q Consensus 187 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 214 (442)
|+|++..+..+..++ |+.|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666644333343333 666666666554
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=7.2e-12 Score=120.45 Aligned_cols=98 Identities=20% Similarity=0.154 Sum_probs=77.1
Q ss_pred CCC-CCCcccchhccCCCCCCEEEccC-CCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCC
Q 013460 91 SGL-GLSGTMGYLLSDLLSLRKFDLSG-NSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLT 166 (442)
Q Consensus 91 ~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 166 (442)
+++ ++++ +|. +..+++|++|+|++ |.|++..+..+. ++|+.|+|++|+|++..|..|.++++|++|+|++|+|+
T Consensus 16 ~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 16 TRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp CSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred CCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 344 5654 566 88888888888886 888877666665 88888888888888888888888888888888888888
Q ss_pred CchhhhhcCCCCCcEEeCCCCCCCC
Q 013460 167 QSIGDIFGNLAGLATLDLSFNNFSG 191 (442)
Q Consensus 167 ~~~p~~~~~l~~L~~L~Ls~N~l~~ 191 (442)
+..+..+..+. |+.|+|.+|.+..
T Consensus 94 ~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 94 SLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred eeCHHHcccCC-ceEEEeeCCCccC
Confidence 76666666655 8888888888874
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=3.4e-11 Score=114.93 Aligned_cols=91 Identities=19% Similarity=0.160 Sum_probs=46.9
Q ss_pred CCCCCEEEcccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCC-EEEcccCcCCccC-ccCCCCC-ccEE
Q 013460 152 MVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNIS-SLYLQNNQVTGSL-NVFSGLP-LTTL 228 (442)
Q Consensus 152 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~-~~~~~l~-L~~L 228 (442)
+++|++|+|++|+++...+..|.++.+|+.|+|.+| ++...+..|.++.+|+ .+++.+ .++... ..|..+. |+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 445555555555555444445555555555555555 4433344455555555 555555 444332 2455554 5555
Q ss_pred EeecccCcccCChhcc
Q 013460 229 NVANNHFSGWIPRELI 244 (442)
Q Consensus 229 ~ls~N~l~~~~p~~~~ 244 (442)
++++|.++..-+..|.
T Consensus 303 ~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 303 LATGDKITTLGDELFG 318 (329)
T ss_dssp EECSSCCCEECTTTTC
T ss_pred EeCCCccCccchhhhc
Confidence 5555555544333343
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=4.9e-12 Score=122.66 Aligned_cols=133 Identities=20% Similarity=0.242 Sum_probs=105.1
Q ss_pred CcEEEEEeCCCCCCcccch-hccCCCCCCEEEccCCCCCCCCCCCc-------cCCCcEEEccCCcCCCC----cccccc
Q 013460 83 SAVVSIDISGLGLSGTMGY-LLSDLLSLRKFDLSGNSIHDTIPYQL-------PPNLTSLNLASNNFSGN----LPYSIA 150 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~-------~~~L~~L~Ls~n~l~~~----~p~~~~ 150 (442)
.+|+.|+|++|.+...... ....+.+|+.|+|++|.|++.....+ .++|++|+|++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 6899999999999754332 33345689999999999975433332 27899999999999742 455567
Q ss_pred CCCCCCEEEcccCcCCCc----hhhhhcCCCCCcEEeCCCCCCCCC----CchhccCCCCCCEEEcccCcCCc
Q 013460 151 SMVSLSYLNVSRNSLTQS----IGDIFGNLAGLATLDLSFNNFSGD----LPNSFISLSNISSLYLQNNQVTG 215 (442)
Q Consensus 151 ~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 215 (442)
.+++|++|+|++|.++.. ++..+...++|++|+|++|.|+.. ++..+...++|++|+|++|.|++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 889999999999999853 356677888999999999999853 34455677999999999999975
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.09 E-value=4.4e-12 Score=130.85 Aligned_cols=174 Identities=17% Similarity=0.122 Sum_probs=91.8
Q ss_pred CcEEEEEeCCCCCCcccc-hhccCCCCCCEEEccCCCCCCCCCCCcc---CCCcEEEccC-----------CcCCCC-cc
Q 013460 83 SAVVSIDISGLGLSGTMG-YLLSDLLSLRKFDLSGNSIHDTIPYQLP---PNLTSLNLAS-----------NNFSGN-LP 146 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~---~~L~~L~Ls~-----------n~l~~~-~p 146 (442)
.++++|+|++|.+++... ..+..+++|++|+++ +.+.+.....+. ++|++|+|++ |.+++. ++
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 589999999999865433 446677777777776 333221111111 4555555552 333322 11
Q ss_pred ccccCCCCCCEEEcccCcCCCchhhh----------------------------------hcCCCCCcEEeCCCCC--CC
Q 013460 147 YSIASMVSLSYLNVSRNSLTQSIGDI----------------------------------FGNLAGLATLDLSFNN--FS 190 (442)
Q Consensus 147 ~~~~~l~~L~~L~L~~n~l~~~~p~~----------------------------------~~~l~~L~~L~Ls~N~--l~ 190 (442)
.....+++|++|+++.|++++..+.. +..+++|++|+|++|. ++
T Consensus 372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~ 451 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT 451 (592)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC
T ss_pred HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc
Confidence 11223445555555444444443333 3444455555554322 33
Q ss_pred CCCchhcc-CCCCCCEEEcccCcCCcc-Cc-cCCCCC-ccEEEeecccCcccC-C---hhccccccccccCCcCC
Q 013460 191 GDLPNSFI-SLSNISSLYLQNNQVTGS-LN-VFSGLP-LTTLNVANNHFSGWI-P---RELISIRTFIYDGNSFD 257 (442)
Q Consensus 191 ~~~p~~l~-~l~~L~~L~Ls~N~l~~~-~~-~~~~l~-L~~L~ls~N~l~~~~-p---~~~~~l~~l~~~~n~~~ 257 (442)
+..+..+. .+++|+.|+|++|++++. ++ .+..++ |++|+|++|.+++.. + ..+.+|+.|++++|.++
T Consensus 452 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 33222232 356677777777776642 22 334555 777777777765432 2 23566777777777754
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.04 E-value=7.6e-11 Score=121.49 Aligned_cols=127 Identities=16% Similarity=0.111 Sum_probs=66.0
Q ss_pred CCcEEEEEeCCCCCCcccchhccCC--CCCCEEEccCCC-CCCC-CCCCc--cCCCcEEEccCCcCCCC----ccccccC
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDL--LSLRKFDLSGNS-IHDT-IPYQL--PPNLTSLNLASNNFSGN----LPYSIAS 151 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~-l~~~-~p~~~--~~~L~~L~Ls~n~l~~~----~p~~~~~ 151 (442)
..+++.|+|++|.+++..+..+..+ .+|++|+|++|. +... ++... .++|++|+|++|.+++. ++..+..
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 3677888888877766554444442 236666666654 1100 00000 15666666666665544 3333445
Q ss_pred CCCCCEEEcccCcCC----CchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcc
Q 013460 152 MVSLSYLNVSRNSLT----QSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQ 209 (442)
Q Consensus 152 l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 209 (442)
+++|++|++++|.++ +.++..+.++++|++|+|++|.+.+ +|..+..+++|+.|+++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence 566666666666665 2334444555666666666665542 33444444444444443
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=7.1e-10 Score=105.68 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=118.8
Q ss_pred CCcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCC-------------C---------------c------
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPY-------------Q---------------L------ 127 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-------------~---------------~------ 127 (442)
..+|+.|+|++ +++..-+..|..+++|+.|++++|.+....+. . +
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 37888999988 88877778899999999999998875311111 0 0
Q ss_pred ----------------------------------------------cCCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 128 ----------------------------------------------PPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 128 ----------------------------------------------~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
.++|+.|+|++|+++......|.++.+|+.|+|.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 2589999999999997667789999999999999
Q ss_pred cCcCCCchhhhhcCCCCCc-EEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEE
Q 013460 162 RNSLTQSIGDIFGNLAGLA-TLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLN 229 (442)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ 229 (442)
+| +....+..|.++.+|+ .|++.+ +++...+..|.++++|+.|++++|+++...+ .|..++ |+.++
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 98 8877778899999999 999998 7776667889999999999999999988765 677776 87775
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.88 E-value=6e-11 Score=122.30 Aligned_cols=172 Identities=15% Similarity=0.081 Sum_probs=92.2
Q ss_pred CcEEEEEeCCCCCCcc-cchhccCCCCCCEEEccCCCCCCCCCCCc---cCCCcEEEccC---------CcCCCCccccc
Q 013460 83 SAVVSIDISGLGLSGT-MGYLLSDLLSLRKFDLSGNSIHDTIPYQL---PPNLTSLNLAS---------NNFSGNLPYSI 149 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~---~~~L~~L~Ls~---------n~l~~~~p~~~ 149 (442)
.+|+.|+|++|.+++. +...+..+++|++|++++| +.+.....+ .++|++|+|.+ +.+++.....+
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 7899999999997754 3344678888999998887 432111111 16777777732 34443222222
Q ss_pred c-CCCCCCEEEcccCcCCCchhhhhc-CCCCCcEEeCC--C----CCCCCC-----CchhccCCCCCCEEEcccCcCCcc
Q 013460 150 A-SMVSLSYLNVSRNSLTQSIGDIFG-NLAGLATLDLS--F----NNFSGD-----LPNSFISLSNISSLYLQNNQVTGS 216 (442)
Q Consensus 150 ~-~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~ 216 (442)
. .+++|++|.+..|++++.....+. .+++|+.|+|+ + |.++.. ++..+..+++|+.|+|++ .+++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 2 356666666666666655444443 46666666666 3 344421 111244555666666654 33332
Q ss_pred C-ccCCC-CC-ccEEEeecccCcccCC----hhccccccccccCCcC
Q 013460 217 L-NVFSG-LP-LTTLNVANNHFSGWIP----RELISIRTFIYDGNSF 256 (442)
Q Consensus 217 ~-~~~~~-l~-L~~L~ls~N~l~~~~p----~~~~~l~~l~~~~n~~ 256 (442)
. ..+.. ++ |+.|+|++|.+++..+ ..+.+|+.|++++|++
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 1 12221 33 5555555555544322 2234555555555554
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.88 E-value=1.3e-10 Score=119.83 Aligned_cols=106 Identities=15% Similarity=0.157 Sum_probs=68.7
Q ss_pred CCcEEEEEeCCCCCCcccchhcc-CCCCCCEEEccCC-CCCCC-CCCCc--cCCCcEEEccCCcCCCCcccccc----CC
Q 013460 82 GSAVVSIDISGLGLSGTMGYLLS-DLLSLRKFDLSGN-SIHDT-IPYQL--PPNLTSLNLASNNFSGNLPYSIA----SM 152 (442)
Q Consensus 82 ~~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~p~~~--~~~L~~L~Ls~n~l~~~~p~~~~----~l 152 (442)
..+|+.|+|++|.+++..+..+. .+++|++|+|++| .+++. ++... .++|++|+|++|.+++..+..+. .+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 46788888888888776666564 6788888888888 44432 11111 17888888888887755444333 56
Q ss_pred CCCCEEEcccCc--CCC-chhhhhcCCCCCcEEeCCCC
Q 013460 153 VSLSYLNVSRNS--LTQ-SIGDIFGNLAGLATLDLSFN 187 (442)
Q Consensus 153 ~~L~~L~L~~n~--l~~-~~p~~~~~l~~L~~L~Ls~N 187 (442)
++|++|++++|. ++. .++..+..+++|++|+|++|
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 678888888776 321 12222344677777777776
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=2.8e-09 Score=102.58 Aligned_cols=172 Identities=15% Similarity=0.192 Sum_probs=103.7
Q ss_pred CcEEEEEeCCCCCC---------cccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCcccccc--C
Q 013460 83 SAVVSIDISGLGLS---------GTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIA--S 151 (442)
Q Consensus 83 ~~l~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~--~ 151 (442)
.+|+.|.+.+.... +.+...+..+++|+.|+|++|.-. .++..-.++|+.|+|..|.++......+. .
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~ 217 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSCBCTTCSEEEEECSBCCHHHHHHHHHSB
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eeccccCCCCcEEEEecCCCChHHHHHHHHcc
Confidence 57888888655331 235566777888899988887311 22221127888888888887654444444 6
Q ss_pred CCCCCEEEccc--CcCCCc-----hhhhh--cCCCCCcEEeCCCCCCCCCCchhcc---CCCCCCEEEcccCcCCccC--
Q 013460 152 MVSLSYLNVSR--NSLTQS-----IGDIF--GNLAGLATLDLSFNNFSGDLPNSFI---SLSNISSLYLQNNQVTGSL-- 217 (442)
Q Consensus 152 l~~L~~L~L~~--n~l~~~-----~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~~-- 217 (442)
+++|+.|+|+. |...+. +...+ ..+++|++|+|.+|.+.+..+..+. .+++|++|+|+.|.+.+.-
T Consensus 218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~ 297 (362)
T 2ra8_A 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR 297 (362)
T ss_dssp CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH
T ss_pred CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHH
Confidence 78888888753 221111 11122 2468888888888887654433333 4678888888888887531
Q ss_pred ---ccCCCCC-ccEEEeecccCcccCChhccc-c-ccccccCCc
Q 013460 218 ---NVFSGLP-LTTLNVANNHFSGWIPRELIS-I-RTFIYDGNS 255 (442)
Q Consensus 218 ---~~~~~l~-L~~L~ls~N~l~~~~p~~~~~-l-~~l~~~~n~ 255 (442)
..+..++ |+.|+|++|.++...-..+.. + ..++++.+.
T Consensus 298 ~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 298 LLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHCCSEEECCSBC
T ss_pred HHHhhcccCCcceEEECCCCcCCHHHHHHHHHHcCCEEEecCCc
Confidence 1223344 888888888876543333332 2 234455444
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.70 E-value=2.4e-09 Score=93.10 Aligned_cols=115 Identities=12% Similarity=0.123 Sum_probs=50.9
Q ss_pred cchhccCCCCCCEEEccCC-CCCCCCCCCc----c--CCCcEEEccCCcCCCC----ccccccCCCCCCEEEcccCcCCC
Q 013460 99 MGYLLSDLLSLRKFDLSGN-SIHDTIPYQL----P--PNLTSLNLASNNFSGN----LPYSIASMVSLSYLNVSRNSLTQ 167 (442)
Q Consensus 99 ~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~----~--~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~ 167 (442)
+...+...+.|++|+|++| .+.......+ . ++|++|+|++|.+... +...+...+.|++|+|++|.|..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445555666666666666 5553211111 1 3444444444444321 22223333455555555555543
Q ss_pred c----hhhhhcCCCCCcEEeC--CCCCCCCC----CchhccCCCCCCEEEcccCcC
Q 013460 168 S----IGDIFGNLAGLATLDL--SFNNFSGD----LPNSFISLSNISSLYLQNNQV 213 (442)
Q Consensus 168 ~----~p~~~~~l~~L~~L~L--s~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l 213 (442)
. +...+...++|++|+| ++|.+... +...+...++|++|+|++|.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2 2233344445555555 44555432 122233334455555544444
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.67 E-value=8.6e-11 Score=107.63 Aligned_cols=66 Identities=26% Similarity=0.363 Sum_probs=33.0
Q ss_pred CCCCCcEEeCCCCCCCC--CCchhccCCCCCCEEEcccCcCCcc--CccCCCCCccEEEeecccCcccCC
Q 013460 175 NLAGLATLDLSFNNFSG--DLPNSFISLSNISSLYLQNNQVTGS--LNVFSGLPLTTLNVANNHFSGWIP 240 (442)
Q Consensus 175 ~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~--~~~~~~l~L~~L~ls~N~l~~~~p 240 (442)
++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. +..+..+.|+.|+|++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccC
Confidence 34555555555555554 2334444555555555555555543 122333345666666666655444
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.62 E-value=2.4e-07 Score=90.53 Aligned_cols=168 Identities=11% Similarity=0.106 Sum_probs=120.6
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNV 160 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (442)
.+|+.++|++|+++......|. +.+|+.+.|..+ ++......|. ++|+.++|..| ++......|.+ .+|+.+.|
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence 6899999999999877666776 589999999854 6655555554 78999999875 55444556666 78999999
Q ss_pred ccCcCCCchhhhhcCCCCCcEEeCCCCCCC-----CCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecc
Q 013460 161 SRNSLTQSIGDIFGNLAGLATLDLSFNNFS-----GDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANN 233 (442)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N 233 (442)
.+.++......|.++.+|+.+++.+|.+. ...+..|..+++|+.++|.+ .++.... .|..+. |+.++|..|
T Consensus 256 -p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 256 -PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp -ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred -CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 45566666778888999999999888765 23456788889999999984 4655443 677766 899988655
Q ss_pred cCcccCChhcc--ccccccccCCcCC
Q 013460 234 HFSGWIPRELI--SIRTFIYDGNSFD 257 (442)
Q Consensus 234 ~l~~~~p~~~~--~l~~l~~~~n~~~ 257 (442)
++..-...|. +|+.+.+.+|...
T Consensus 334 -l~~I~~~aF~~~~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 334 -VTQINFSAFNNTGIKEVKVEGTTPP 358 (401)
T ss_dssp -CCEECTTSSSSSCCCEEEECCSSCC
T ss_pred -ccEEcHHhCCCCCCCEEEEcCCCCc
Confidence 5433333332 5677778777553
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.61 E-value=2e-07 Score=91.00 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=99.3
Q ss_pred cEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc-CCCcEEEccCCcCCCCccccccCCCCCCEEEccc
Q 013460 84 AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP-PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR 162 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (442)
+|+.+.|.+ .+...-+..|.++.+|+.++|.+|.++......+. .+|+.+.|.++ ++......|.++.+|+.+++..
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 466666664 55555556777777777777777777654444444 67777777643 5545556677777777777776
Q ss_pred CcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCC-----ccC-ccCCCCC-ccEEEeecccC
Q 013460 163 NSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVT-----GSL-NVFSGLP-LTTLNVANNHF 235 (442)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~~-~~~~~l~-L~~L~ls~N~l 235 (442)
| ++......|.+ .+|+.++| .|.++......|.++++|+.+++.+|.+. ... ..|..+. |+.++|.+ .+
T Consensus 236 ~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i 311 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI 311 (401)
T ss_dssp T-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC
T ss_pred C-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce
Confidence 4 44444455555 67777777 34455444566777788888888777665 111 2566665 77777773 35
Q ss_pred cccCChhc---ccccccccc
Q 013460 236 SGWIPREL---ISIRTFIYD 252 (442)
Q Consensus 236 ~~~~p~~~---~~l~~l~~~ 252 (442)
...-...| .+|+.+.+.
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp CEECTTTTTTCCSCCEEEEC
T ss_pred EEEhhhhhcCCCCccEEEEC
Confidence 43333333 334445443
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=1.2e-08 Score=88.64 Aligned_cols=109 Identities=21% Similarity=0.345 Sum_probs=87.6
Q ss_pred CCcEEEEEeCCC-CCCc----ccchhccCCCCCCEEEccCCCCCCCCCCCc----c--CCCcEEEccCCcCCCC----cc
Q 013460 82 GSAVVSIDISGL-GLSG----TMGYLLSDLLSLRKFDLSGNSIHDTIPYQL----P--PNLTSLNLASNNFSGN----LP 146 (442)
Q Consensus 82 ~~~l~~L~L~~n-~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~----~--~~L~~L~Ls~n~l~~~----~p 146 (442)
...+++|+|++| .+.. .+...+...++|++|+|++|.|.+.....+ . +.|++|+|++|.|... +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 478999999999 8874 356677888999999999999985432222 2 7899999999999854 45
Q ss_pred ccccCCCCCCEEEc--ccCcCCCc----hhhhhcCCCCCcEEeCCCCCCC
Q 013460 147 YSIASMVSLSYLNV--SRNSLTQS----IGDIFGNLAGLATLDLSFNNFS 190 (442)
Q Consensus 147 ~~~~~l~~L~~L~L--~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 190 (442)
..+...+.|++|+| ++|.+... +...+...++|++|+|++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 66778889999999 88999864 3445566789999999999875
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.60 E-value=4.8e-08 Score=93.88 Aligned_cols=172 Identities=15% Similarity=0.183 Sum_probs=114.3
Q ss_pred CcEEEEEeCCCCCCc-c-------cchhccCCCCCCEEEccCCCCCC-----CCCCCc----c--CCCcEEEccCCcCCC
Q 013460 83 SAVVSIDISGLGLSG-T-------MGYLLSDLLSLRKFDLSGNSIHD-----TIPYQL----P--PNLTSLNLASNNFSG 143 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~-~-------~~~~~~~l~~L~~L~l~~n~l~~-----~~p~~~----~--~~L~~L~Ls~n~l~~ 143 (442)
.+|+.|.+......+ . +...+..+++|+.|.+.++.... .....+ . ++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 457777777665442 1 23345677899999997764321 101112 1 89999999988311
Q ss_pred CccccccCCCCCCEEEcccCcCCCchhhhhc--CCCCCcEEeCCC--CCCCCC-----Cchhc--cCCCCCCEEEcccCc
Q 013460 144 NLPYSIASMVSLSYLNVSRNSLTQSIGDIFG--NLAGLATLDLSF--NNFSGD-----LPNSF--ISLSNISSLYLQNNQ 212 (442)
Q Consensus 144 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~--N~l~~~-----~p~~l--~~l~~L~~L~Ls~N~ 212 (442)
.++. + .+++|+.|+|..|.+.......+. .+++|++|+|+. |...+. +...+ ..+++|++|+|.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 2333 3 388999999999998765444454 789999999863 222221 11122 257899999999999
Q ss_pred CCccCc-c---CCCCC-ccEEEeecccCccc----CC---hhccccccccccCCcCC
Q 013460 213 VTGSLN-V---FSGLP-LTTLNVANNHFSGW----IP---RELISIRTFIYDGNSFD 257 (442)
Q Consensus 213 l~~~~~-~---~~~l~-L~~L~ls~N~l~~~----~p---~~~~~l~~l~~~~n~~~ 257 (442)
+.+... . ...++ |+.|+|+.|.+.+. ++ ..+.+|+.|++++|.+.
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 875321 1 12355 99999999999863 22 34678899999988775
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=2.8e-07 Score=84.30 Aligned_cols=94 Identities=22% Similarity=0.359 Sum_probs=64.5
Q ss_pred EEccCCcCC---CCccccccCCCCCCEEEcccCcCCC--chhhhhcCCCCCcEEeCCCCCCCCCCchhccCCC--CCCEE
Q 013460 134 LNLASNNFS---GNLPYSIASMVSLSYLNVSRNSLTQ--SIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLS--NISSL 206 (442)
Q Consensus 134 L~Ls~n~l~---~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L 206 (442)
++++.|... ..++....++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 566666332 2222222467889999999999987 4556777889999999999999864 3344444 89999
Q ss_pred EcccCcCCccCc--------cCCCCC-ccEEE
Q 013460 207 YLQNNQVTGSLN--------VFSGLP-LTTLN 229 (442)
Q Consensus 207 ~Ls~N~l~~~~~--------~~~~l~-L~~L~ 229 (442)
+|++|.+++.++ .+..++ |+.||
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 999999987543 234455 66665
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=2.3e-06 Score=72.70 Aligned_cols=84 Identities=5% Similarity=0.086 Sum_probs=62.3
Q ss_pred CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCc-CCCchhhhhcCC----CCCcEEeCCCCC-CCCCCchhccCCCC
Q 013460 129 PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNS-LTQSIGDIFGNL----AGLATLDLSFNN-FSGDLPNSFISLSN 202 (442)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 202 (442)
..|+.||++++.++...-..+.++++|++|+|++|. ++...-..+..+ ++|++|+|++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467777777777776655667888999999999985 775544556654 378999998874 77555556778888
Q ss_pred CCEEEcccCc
Q 013460 203 ISSLYLQNNQ 212 (442)
Q Consensus 203 L~~L~Ls~N~ 212 (442)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888875
No 154
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.85 E-value=4.9e-06 Score=72.04 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=11.4
Q ss_pred chhccCCCCCCEEEccCC-CCC
Q 013460 100 GYLLSDLLSLRKFDLSGN-SIH 120 (442)
Q Consensus 100 ~~~~~~l~~L~~L~l~~n-~l~ 120 (442)
...+.+-+.|+.|+|++| +|.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~ig 55 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVS 55 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSC
T ss_pred HHHHhcCCCccEEECCCCCCCC
Confidence 334445556666666654 554
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.74 E-value=9.7e-06 Score=68.85 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=26.8
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCC-CC
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNS-IH 120 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~ 120 (442)
-+|+.|||+++.++..--..+..+++|+.|+|++|. |+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It 99 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE 99 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC
Confidence 468888888888775544556677777777777774 54
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.74 E-value=2e-05 Score=68.23 Aligned_cols=82 Identities=21% Similarity=0.279 Sum_probs=51.5
Q ss_pred cCCcEEEEEeCCC-CCCc----ccchhccCCCCCCEEEccCCCCCCCCCCCcc------CCCcEEEccCCcCCCC----c
Q 013460 81 EGSAVVSIDISGL-GLSG----TMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP------PNLTSLNLASNNFSGN----L 145 (442)
Q Consensus 81 ~~~~l~~L~L~~n-~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~------~~L~~L~Ls~n~l~~~----~ 145 (442)
.+..|++|+|++| +|.. .+...+..-+.|+.|+|++|+|.+.....+. +.|+.|+|++|.|... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3578999999986 7763 3566777778899999999988754444333 5566666666666522 2
Q ss_pred cccccCCCCCCEEEccc
Q 013460 146 PYSIASMVSLSYLNVSR 162 (442)
Q Consensus 146 p~~~~~l~~L~~L~L~~ 162 (442)
.+.+..-+.|++|+|++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 22233334455555543
No 157
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=97.71 E-value=1.7e-05 Score=74.74 Aligned_cols=45 Identities=29% Similarity=0.690 Sum_probs=42.5
Q ss_pred ccceeHHHHHhhcCCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 397 ATSYTVASLQTATNSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 397 ~~~f~~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
...|+++++..++++|...++||+|+||.||+|...+|+.||||+
T Consensus 17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~ 61 (326)
T 3uim_A 17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKR 61 (326)
T ss_dssp CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEE
T ss_pred cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEE
Confidence 467999999999999999999999999999999998999999996
No 158
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=97.60 E-value=1.8e-05 Score=74.46 Aligned_cols=44 Identities=34% Similarity=0.654 Sum_probs=39.0
Q ss_pred cceeHHHHHhhcCCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 398 TSYTVASLQTATNSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 398 ~~f~~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
.++.+.++..++++|...++||+|+||.||+|...+|+.||||+
T Consensus 27 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~ 70 (321)
T 2qkw_B 27 YRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR 70 (321)
T ss_dssp ---CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEE
T ss_pred eeecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEE
Confidence 46778889999999999999999999999999999999999996
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.32 E-value=0.00044 Score=55.73 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=35.2
Q ss_pred EEEccCCCCC-CCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCC
Q 013460 111 KFDLSGNSIH-DTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLT 166 (442)
Q Consensus 111 ~L~l~~n~l~-~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 166 (442)
.++.++++++ ..+|..++.+|+.|+|++|+|+..-+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4455555554 3455556666777777777777555555666777777777777654
No 160
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=97.26 E-value=0.00011 Score=69.32 Aligned_cols=44 Identities=25% Similarity=0.236 Sum_probs=36.9
Q ss_pred cceeHHHHHhhcCC----------CCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 398 TSYTVASLQTATNS----------FSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 398 ~~f~~~eL~~AT~~----------F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
..|+++++..|++. |...+.||+|+||.||+|... +|+.||||+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~ 77 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKM 77 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEE
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEE
Confidence 45899999999976 455678999999999999986 799999996
No 161
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=97.21 E-value=4.5e-05 Score=71.48 Aligned_cols=32 Identities=28% Similarity=0.535 Sum_probs=28.0
Q ss_pred CCCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
++|...++||+|+||+||+|... +|+.||||+
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~ 89 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKR 89 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEE
Confidence 45666789999999999999986 789999996
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.20 E-value=0.00099 Score=64.52 Aligned_cols=107 Identities=11% Similarity=0.206 Sum_probs=49.6
Q ss_pred hccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCC
Q 013460 102 LLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGL 179 (442)
Q Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 179 (442)
.|..+..|+.+.+.++... .....+. ..|+.+.+. +.++......|.++.+|+.++|..+ ++......|.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 4555555555555443321 1112222 455555553 2233233344555555555555433 333333445555555
Q ss_pred cEEeCCCCCCCCCCchhccCCCCCCEEEcccCc
Q 013460 180 ATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQ 212 (442)
Q Consensus 180 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 212 (442)
+.+.|..+ ++..-...|.++.+|+.+++.+|.
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 55555432 433333455555555555555443
No 163
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=97.19 E-value=0.00011 Score=69.44 Aligned_cols=27 Identities=26% Similarity=0.554 Sum_probs=23.4
Q ss_pred cceeccCccceEEEEEec------CCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFA------NGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~------~G~~VAVKr 441 (442)
.+.||+|+||.||+|.+. +|+.||||+
T Consensus 46 ~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~ 78 (329)
T 4aoj_A 46 KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKA 78 (329)
T ss_dssp EEEEEECSSEEEEEEEESSSCC---CEEEEEEE
T ss_pred EEEEccCCCcEEEEEEECCcccCCCCeEEEEEE
Confidence 568999999999999985 478999996
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.91 E-value=0.0025 Score=61.17 Aligned_cols=130 Identities=14% Similarity=0.152 Sum_probs=88.4
Q ss_pred ccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcC
Q 013460 98 TMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGN 175 (442)
Q Consensus 98 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 175 (442)
.....+..+.+|+.+.+..+ +.......+. ..|+.+.+..+ ++......+.++.+|+.+.+..+ +.......|.+
T Consensus 208 i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~ 284 (379)
T 4h09_A 208 VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSG 284 (379)
T ss_dssp ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTT
T ss_pred Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccc
Confidence 34456677788888888655 3322233333 77888888765 55445567778888999888654 55455567888
Q ss_pred CCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccC-ccCCCCC-ccEEEee
Q 013460 176 LAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSL-NVFSGLP-LTTLNVA 231 (442)
Q Consensus 176 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~l~-L~~L~ls 231 (442)
+.+|+.+++.++.++..-...|.++.+|+.++|..+ ++..- ..|.... |+.+.+.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 899999999888887555677888899999998754 44332 2566655 7666553
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.86 E-value=0.0081 Score=58.00 Aligned_cols=142 Identities=14% Similarity=0.134 Sum_probs=84.3
Q ss_pred cEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcc
Q 013460 84 AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVS 161 (442)
Q Consensus 84 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 161 (442)
.++.+.+... +...-...+..+..|+.+.+..+... .....+. ..++.+.+..+.+. ...+..+.+|+.+.+.
T Consensus 231 ~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 231 GVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEEC
T ss_pred CCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccc
Confidence 3444444322 23233345666667777776655432 1222222 56666666554432 2346677788888876
Q ss_pred cCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccC-ccCCCCC-ccEEEeecc
Q 013460 162 RNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSL-NVFSGLP-LTTLNVANN 233 (442)
Q Consensus 162 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~l~-L~~L~ls~N 233 (442)
++ ++......|.++.+|+.++|..+ ++..-...|.++.+|+.+++..| ++..- ..|.... |+.+++..+
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 54 55455566778888888888644 55444567778888888888766 54433 2566665 888887654
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.78 E-value=0.0018 Score=52.11 Aligned_cols=56 Identities=23% Similarity=0.258 Sum_probs=31.5
Q ss_pred EEEcccCcCC-CchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCC
Q 013460 157 YLNVSRNSLT-QSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVT 214 (442)
Q Consensus 157 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 214 (442)
.++.+++.++ ..+|..+ ..+|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 2233221 235666666666666544455666666666666666653
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.74 E-value=0.0086 Score=57.37 Aligned_cols=128 Identities=15% Similarity=0.158 Sum_probs=86.8
Q ss_pred hccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEcccCcCCCchhhhhcCCCCC
Q 013460 102 LLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGL 179 (442)
Q Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 179 (442)
.+.....+..+.+..+... .....+. .+|+.+.+..+ +.......+.++..|+.+.+..+ ++......|.++.+|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp ECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 3445555666665543322 1122222 77888888655 34344556778899999999776 555556678888999
Q ss_pred cEEeCCCCCCCCCCchhccCCCCCCEEEcccCcCCccCc-cCCCCC-ccEEEeecc
Q 013460 180 ATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQVTGSLN-VFSGLP-LTTLNVANN 233 (442)
Q Consensus 180 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~ls~N 233 (442)
+.+.+..+ +.......|..+.+|+.+.+.++.++...+ .|.... |+.++|..+
T Consensus 266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred cccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 99998654 553444578889999999999888876543 677766 999998654
No 168
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=96.73 E-value=0.00043 Score=68.11 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=37.2
Q ss_pred eeHHHHHhhcCCCCccceeccCccceEEEEEecC-CcEEEEec
Q 013460 400 YTVASLQTATNSFSQEFLIGEGSLGRVYRAEFAN-GKVIYCVR 441 (442)
Q Consensus 400 f~~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~-G~~VAVKr 441 (442)
+.+.++..++++|...++||+|+||.||+|...+ |+.||||+
T Consensus 64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~ 106 (437)
T 4aw2_A 64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKI 106 (437)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred chhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEE
Confidence 5677888889999999999999999999999865 67899995
No 169
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.72 E-value=0.0036 Score=60.57 Aligned_cols=124 Identities=14% Similarity=0.170 Sum_probs=83.9
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCcc--CCCcEEEccCCcCCCCccccccCCCCCCEEEc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNV 160 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 160 (442)
..++.+.+.++ +...-...|.++..|+.+.+. +.++..-...|. .+|+.++|..+ ++......|.++.+|+.+.+
T Consensus 265 ~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 265 AYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 34666666543 333445678899999999996 445544444454 89999999865 66455678999999999999
Q ss_pred ccCcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccCcC
Q 013460 161 SRNSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNNQV 213 (442)
Q Consensus 161 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 213 (442)
..+ ++......|.++.+|+.+++.++... -..+..+.+|+.+.+..|.+
T Consensus 342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred Ccc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 765 66666778999999999999987643 24567778888888876654
No 170
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=96.71 E-value=0.00024 Score=69.45 Aligned_cols=36 Identities=8% Similarity=0.058 Sum_probs=29.8
Q ss_pred HhhcCCCCccceeccCccceEEEEE-ecCCcEEEEec
Q 013460 406 QTATNSFSQEFLIGEGSLGRVYRAE-FANGKVIYCVR 441 (442)
Q Consensus 406 ~~AT~~F~~~~~IG~GgfG~VYkg~-L~~G~~VAVKr 441 (442)
...+.+|...++||+|+||+||+|. ..+|+.||||+
T Consensus 74 ~~~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~ 110 (413)
T 3dzo_A 74 GERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHV 110 (413)
T ss_dssp SSCCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEE
T ss_pred CCCceeEEEecccccCCCEEEEEEEecCCCCceEEEE
Confidence 3345556677899999999999999 56799999995
No 171
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=96.71 E-value=0.00067 Score=63.27 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=21.6
Q ss_pred cceeccCccceEEEEEecCCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
.+.||+|+||+||||++.+ .||||.
T Consensus 41 ~~~iG~G~fG~Vy~~~~~~--~vAvK~ 65 (307)
T 3omv_A 41 STRIGSGSFGTVYKGKWHG--DVAVKI 65 (307)
T ss_dssp EEECCCCSSSEEEEEESSS--EEEEEE
T ss_pred eeEEeeCCCcEEEEEEECC--cEEEEE
Confidence 5689999999999999864 589985
No 172
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.68 E-value=0.0059 Score=58.98 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=93.0
Q ss_pred CcEEEEEeCCCCCCcccchhccCCCCCCEEEccCCCCCCCCCCCccCCCcEEEccCCcCCCCccccccCCCCCCEEEccc
Q 013460 83 SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSR 162 (442)
Q Consensus 83 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (442)
..++.+.+..+. .......|..+..++.+.+..+.+.. .......+|+.+.+..+ ++......|.++.+|+.++|.+
T Consensus 253 ~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~ 329 (394)
T 4fs7_A 253 TDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY 329 (394)
T ss_dssp SSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred ccceeEEcCCCc-ceeeccccccccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCCEEEeCC
Confidence 467777777653 33556678889999999887765432 11111288999999765 6545566788999999999975
Q ss_pred CcCCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccC
Q 013460 163 NSLTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNN 211 (442)
Q Consensus 163 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 211 (442)
+ ++......|.++.+|+.+++..| ++..-...|.++.+|+.+++..+
T Consensus 330 ~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 330 L-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred c-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 4 66666778999999999999877 66555678999999999999765
No 173
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=96.48 E-value=0.00072 Score=63.85 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=25.9
Q ss_pred CCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
.|...+.||+|+||.||+|+- .+|+.||||+
T Consensus 59 ~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~ 90 (336)
T 4g3f_A 59 WMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKK 90 (336)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTCCEEEEEE
T ss_pred heEeCcEeccCCCeEEEEEEECCCCCEEEEEE
Confidence 344456899999999999986 5689999996
No 174
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=96.47 E-value=0.00088 Score=65.37 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=37.8
Q ss_pred ceeHHHHHhhcCCCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 399 SYTVASLQTATNSFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 399 ~f~~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
.+.++++...+++|...++||+|+||.||++... +|+.||||+
T Consensus 50 ~~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~ 93 (412)
T 2vd5_A 50 VVRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKI 93 (412)
T ss_dssp HHHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEE
T ss_pred hhhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEE
Confidence 3567788888899999999999999999999984 689999995
No 175
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=96.47 E-value=0.0011 Score=62.72 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=25.3
Q ss_pred CCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
|..-+.||+|+||+||+|+- .+|+.||||+
T Consensus 76 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~ 106 (346)
T 4fih_A 76 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKK 106 (346)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEE
T ss_pred cEEeEEeecCcCeEEEEEEECCCCCEEEEEE
Confidence 44456799999999999987 4689999996
No 176
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=96.39 E-value=0.0011 Score=63.15 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=24.5
Q ss_pred CCCccceeccCccceEEEEEecC------CcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEFAN------GKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L~~------G~~VAVKr 441 (442)
+|.-.+.||+|+||.||+|...+ ++.||||+
T Consensus 65 ~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~ 101 (353)
T 4ase_A 65 RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKM 101 (353)
T ss_dssp GEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEE
T ss_pred HeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEE
Confidence 33346789999999999998753 36899996
No 177
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=96.31 E-value=0.0022 Score=60.25 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.2
Q ss_pred cceeccCccceEEEEEec----CCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFA----NGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~----~G~~VAVKr 441 (442)
.++||+|+||.||+|... .+..||||+
T Consensus 54 ~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~ 84 (325)
T 3kul_A 54 EKIIGSGDSGEVCYGRLRVPGQRDVPVAIKA 84 (325)
T ss_dssp EEEEEETTTEEEEEEEECCTTSCCEEEEEEE
T ss_pred eeEEEeCCCcEEEEEEEecCCCCCceEEEEe
Confidence 478999999999999984 456799996
No 178
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=96.25 E-value=0.0019 Score=62.68 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=26.0
Q ss_pred CCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
.|.-.+.||+|+||+||+|.- .+|+.||||+
T Consensus 55 ~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~ 86 (398)
T 4b99_A 55 EYEIIETIGNGAYGVVSSARRRLTGQQVAIKK 86 (398)
T ss_dssp SEEEEEEEEECSSCEEEEEEETTTCCEEEEEE
T ss_pred CeEEEEEEecccCeEEEEEEECCCCCEEEEEE
Confidence 344457899999999999986 5789999996
No 179
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=96.21 E-value=0.0012 Score=62.81 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=36.8
Q ss_pred cceeHHHHHhhcCCCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 398 TSYTVASLQTATNSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 398 ~~f~~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
..|++++-....++|.-.++||+|+||.||+|.. .+|+.||||+
T Consensus 23 ~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~ 67 (360)
T 3llt_A 23 VHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKV 67 (360)
T ss_dssp GSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEE
T ss_pred eeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEE
Confidence 4566666667778888889999999999999988 5678999995
No 180
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=96.11 E-value=0.0012 Score=65.21 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=28.2
Q ss_pred cCCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 409 TNSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 409 T~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
.++|.-.+.||+|+||.||+|...++..||||+
T Consensus 187 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~ 219 (454)
T 1qcf_A 187 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKT 219 (454)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTEEEEEEE
T ss_pred hHHeEEEEEcccCCceEEEEEEECCccEEEEEE
Confidence 344555679999999999999999899999996
No 181
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=96.10 E-value=0.0024 Score=62.18 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=26.1
Q ss_pred CCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
.|..-+.||+|+||.||+|.- .+|+.||||+
T Consensus 152 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~ 183 (423)
T 4fie_A 152 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKK 183 (423)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTCCEEEEEE
T ss_pred hcEeeeEeccCcCcEEEEEEECCCCCEEEEEE
Confidence 344557899999999999987 5689999996
No 182
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=96.09 E-value=0.0021 Score=62.58 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=35.1
Q ss_pred eHHHHHhhcCCCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 401 TVASLQTATNSFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 401 ~~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
.++++....++|.-.++||+|+||.||+|... +|+.||||+
T Consensus 60 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~ 101 (410)
T 3v8s_A 60 KIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKL 101 (410)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEE
T ss_pred HHHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEE
Confidence 45677778888888999999999999999985 478999995
No 183
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=96.01 E-value=0.0022 Score=59.85 Aligned_cols=30 Identities=27% Similarity=0.248 Sum_probs=25.5
Q ss_pred CCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
|.-.++||+|+||+||+|.- .+|+.||||.
T Consensus 34 y~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~ 64 (311)
T 4aw0_A 34 FKFGKILGEGSFSTVVLARELATSREYAIKI 64 (311)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTCCEEEEEE
T ss_pred cEEEEEEecccCeEEEEEEECCCCCEEEEEE
Confidence 44467899999999999986 5689999995
No 184
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=95.99 E-value=0.001 Score=63.67 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=27.0
Q ss_pred hhcCCCCccceeccCccceEEEE------EecCCcEEEEec
Q 013460 407 TATNSFSQEFLIGEGSLGRVYRA------EFANGKVIYCVR 441 (442)
Q Consensus 407 ~AT~~F~~~~~IG~GgfG~VYkg------~L~~G~~VAVKr 441 (442)
...+.|...++||+|+||+||+| ...+|+.||||+
T Consensus 62 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~ 102 (365)
T 3e7e_A 62 LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKV 102 (365)
T ss_dssp CSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEE
T ss_pred ECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEE
Confidence 34556666789999999999999 466789999996
No 185
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=95.94 E-value=0.0011 Score=61.82 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=31.9
Q ss_pred eHHHHHhhcCCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 401 TVASLQTATNSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 401 ~~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
.++.+....+.|.-.+.||+|+||.||+|...+|+.||||+
T Consensus 19 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~ 59 (313)
T 3cek_A 19 YFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKY 59 (313)
T ss_dssp -CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEE
T ss_pred CeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEE
Confidence 33344444455666789999999999999999999999995
No 186
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=95.92 E-value=0.0053 Score=56.46 Aligned_cols=40 Identities=15% Similarity=0.029 Sum_probs=31.0
Q ss_pred HHHHHhhcCCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 402 VASLQTATNSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 402 ~~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
+..+.....-+.-.+.||+|+||.||+|...+|+.||||.
T Consensus 82 l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~ 121 (282)
T 1zar_A 82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKF 121 (282)
T ss_dssp HHHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEE
T ss_pred HHHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEE
Confidence 3344444444545589999999999999998899999995
No 187
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=95.84 E-value=0.0028 Score=60.87 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=26.5
Q ss_pred CCCCccceeccCccceEEEEEec----CCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFA----NGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~----~G~~VAVKr 441 (442)
++|...++||+|+||.||+|+.. ++..||||+
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~ 80 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKT 80 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEE
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEE
Confidence 45666889999999999999985 577899996
No 188
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=95.74 E-value=0.0023 Score=60.39 Aligned_cols=35 Identities=17% Similarity=0.399 Sum_probs=29.2
Q ss_pred hhcCCCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 407 TATNSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 407 ~AT~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
...++|...+.||+|+||.||+|.. .+|+.||||+
T Consensus 48 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~ 83 (340)
T 3an0_A 48 VKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKR 83 (340)
T ss_dssp CCSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred EehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEE
Confidence 3455666678899999999999986 6789999996
No 189
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=95.67 E-value=0.0042 Score=59.97 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=26.5
Q ss_pred CCccceeccCccceEEEEEecCCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
|...+.||+|+||.||+|...+|+.||||+
T Consensus 58 y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~ 87 (390)
T 2zmd_A 58 YSILKQIGSGGSSKVFQVLNEKKQIYAIKY 87 (390)
T ss_dssp EEEEEEEECCSSEEEEEEECTTCCEEEEEE
T ss_pred eEEEEEEccCCCeEEEEEEcCCCCEEEEEE
Confidence 444678999999999999998899999995
No 190
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=95.59 E-value=0.0048 Score=60.23 Aligned_cols=28 Identities=32% Similarity=0.671 Sum_probs=24.6
Q ss_pred ccceeccCccceEEEEEec-CCcEEEEec
Q 013460 414 QEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 414 ~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
..++||+|+||.||+|... +|+.||||+
T Consensus 58 ~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~ 86 (420)
T 1j1b_A 58 DTKVIGNGSFGVVYQAKLCDSGELVAIKK 86 (420)
T ss_dssp EEEEEEECSSEEEEEEEETTTCCEEEEEE
T ss_pred eeeEEeeCCCEEEEEEEECCCCcEEEEEE
Confidence 3568999999999999985 589999996
No 191
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=95.58 E-value=0.0026 Score=61.22 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=28.9
Q ss_pred hhcCCCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 407 TATNSFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 407 ~AT~~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
...++|.-.++||+|+||.||+|... +|+.||||+
T Consensus 51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~ 86 (382)
T 2vx3_A 51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKI 86 (382)
T ss_dssp EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEE
T ss_pred EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEE
Confidence 34566767789999999999999864 678999996
No 192
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=95.52 E-value=0.005 Score=58.86 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=29.6
Q ss_pred HhhcCCCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 406 QTATNSFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 406 ~~AT~~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
....++|...+.||+|+||.||+|... +|+.||||.
T Consensus 90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~ 126 (365)
T 2y7j_A 90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKI 126 (365)
T ss_dssp HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEE
T ss_pred hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEE
Confidence 334455666789999999999999985 799999994
No 193
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=95.47 E-value=0.0052 Score=58.46 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=26.5
Q ss_pred CCCccceeccCccceEEEEEe----cCCcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEF----ANGKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L----~~G~~VAVKr 441 (442)
+|...++||+|+||.||+|.. .+|+.||||+
T Consensus 55 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~ 89 (355)
T 1vzo_A 55 NFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKV 89 (355)
T ss_dssp GEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEE
T ss_pred ceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEE
Confidence 455567999999999999998 4789999995
No 194
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=95.44 E-value=0.0048 Score=59.26 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=24.9
Q ss_pred ccceeccCccceEEEEEec-CCcEEEEec
Q 013460 414 QEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 414 ~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
-.+.||+|+||.||+|... +|+.||||+
T Consensus 118 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~ 146 (377)
T 3cbl_A 118 LGEQIGRGNFGEVFSGRLRADNTLVAVKS 146 (377)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEEE
T ss_pred EeeEeccCCCCeEEEEEEecCCeEEEEEE
Confidence 3578999999999999996 788999995
No 195
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=95.44 E-value=0.0035 Score=58.37 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=26.1
Q ss_pred CCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
++|.-.+.||+|+||+||+|.. +|+.||||+
T Consensus 37 ~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~ 67 (309)
T 3p86_A 37 CDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKI 67 (309)
T ss_dssp GGEEEEEEEEECSSEEEEEEEE-TTEEEEEEE
T ss_pred hHceeeeEeecCCCeEEEEEEE-CCCcEEEEE
Confidence 3444567899999999999987 688999996
No 196
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=95.43 E-value=0.004 Score=59.75 Aligned_cols=32 Identities=9% Similarity=0.062 Sum_probs=26.8
Q ss_pred CCCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
+.|...+.||+|+||.||+|+. .+|+.||||+
T Consensus 73 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~ 105 (377)
T 3byv_A 73 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHV 105 (377)
T ss_dssp EEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEE
T ss_pred ceEEEcceeecCCCEEEEEEEECCCCcEEEEEE
Confidence 3444567999999999999996 5689999996
No 197
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=95.41 E-value=0.008 Score=54.38 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=24.4
Q ss_pred cceeccCccceEEEEEe-cCCcE--EEEec
Q 013460 415 EFLIGEGSLGRVYRAEF-ANGKV--IYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L-~~G~~--VAVKr 441 (442)
.+.||+|+||.||+|.. .+|+. ||||.
T Consensus 52 ~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~ 81 (258)
T 1zth_A 52 GGVISTGKEANVFYADGVFDGKPVAMAVKI 81 (258)
T ss_dssp EEEEEECSSEEEEEEEEEETTEEEEEEEEE
T ss_pred CCEEeecceEEEEEEEEcCCCcEeeEEEEE
Confidence 46899999999999998 78999 99994
No 198
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=95.40 E-value=0.0046 Score=59.00 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=25.8
Q ss_pred cCCCCccceeccCccceEEEEEecCC------cEEEEec
Q 013460 409 TNSFSQEFLIGEGSLGRVYRAEFANG------KVIYCVR 441 (442)
Q Consensus 409 T~~F~~~~~IG~GgfG~VYkg~L~~G------~~VAVKr 441 (442)
+++|.-.++||+|+||.||+|...++ +.||||.
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~ 72 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKV 72 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEE
Confidence 34555577999999999999998664 6899996
No 199
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=95.38 E-value=0.0075 Score=55.45 Aligned_cols=27 Identities=7% Similarity=-0.068 Sum_probs=23.9
Q ss_pred cceeccCccceEEEEEecC-CcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFAN-GKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~-G~~VAVKr 441 (442)
...||+|+||.||+|.... |+.||||.
T Consensus 36 ~~~lg~G~~g~Vy~a~~~~~~~~vavK~ 63 (286)
T 3uqc_A 36 LIFHGGVPPLQFWQALDTALDRQVALTF 63 (286)
T ss_dssp EEEEEBSTTCEEEEEEETTTTEEEEEEE
T ss_pred EEEEcccCCeEEEEEEecCCCceEEEEE
Confidence 4689999999999998854 89999996
No 200
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=95.34 E-value=0.0053 Score=57.80 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=31.3
Q ss_pred HHHHhhcCCCCccceeccCccceEEEEEecC------CcEEEEec
Q 013460 403 ASLQTATNSFSQEFLIGEGSLGRVYRAEFAN------GKVIYCVR 441 (442)
Q Consensus 403 ~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~------G~~VAVKr 441 (442)
.++....++|...+.||+|+||.||+|...+ ++.||||+
T Consensus 40 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~ 84 (343)
T 1luf_A 40 LSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKM 84 (343)
T ss_dssp HHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEE
T ss_pred ceeEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEE
Confidence 3444556777778899999999999999853 47899996
No 201
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=95.33 E-value=0.0066 Score=56.75 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=26.6
Q ss_pred CCCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
+.|.-.++||+|+||.||+|.. .+|+.||||+
T Consensus 43 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~ 75 (320)
T 3a99_A 43 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKH 75 (320)
T ss_dssp TTEEEEEECSSSSSCEEEEEEETTTTEEEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEECCCCcEEEEEE
Confidence 4455567999999999999985 6788999995
No 202
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=95.31 E-value=0.0076 Score=57.16 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=28.0
Q ss_pred hcCCCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 408 ATNSFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 408 AT~~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
.++.|.-.+.||+|+||.||+|... +|+.||||+
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~ 85 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKV 85 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEE
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEE
Confidence 3455666789999999999999986 477899996
No 203
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=95.28 E-value=0.0064 Score=59.98 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=26.2
Q ss_pred CCccceeccCccceEEEEEecCCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
|.-.+.||+|+||.||+|...++..||||+
T Consensus 186 ~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~ 215 (452)
T 1fmk_A 186 LRLEVKLGQGCFGEVWMGTWNGTTRVAIKT 215 (452)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTEEEEEEE
T ss_pred ceeeeeecCCCCeEEEEEEECCCceEEEEE
Confidence 334678999999999999999888999996
No 204
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=95.28 E-value=0.0064 Score=62.54 Aligned_cols=32 Identities=34% Similarity=0.529 Sum_probs=27.6
Q ss_pred CCCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
++|.-.++||+|+||.||+|.- .+|+.||||.
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~ 221 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKC 221 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEE
Confidence 4576678999999999999987 4689999995
No 205
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=95.27 E-value=0.0089 Score=56.20 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=22.1
Q ss_pred cceeccCccceEEEEEecCC-----cEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFANG-----KVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~G-----~~VAVKr 441 (442)
.++||+|+||.||+|..... ..||||+
T Consensus 49 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~ 80 (333)
T 1mqb_A 49 QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKT 80 (333)
T ss_dssp EEEEEECSSSEEEEEEEEC---CCEEEEEEEE
T ss_pred ccEEecCCCeEEEEEEEecCCCCccccEEEEE
Confidence 58999999999999988532 3599996
No 206
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=95.23 E-value=0.0052 Score=57.63 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=27.0
Q ss_pred CCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
++|.-.+.||+|+||.||+|... |+.||||+
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~ 67 (337)
T 3mdy_A 37 KQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKV 67 (337)
T ss_dssp HHCEEEEEEEEETTEEEEEEEET-TEEEEEEE
T ss_pred cceEEEeEeecCCCeEEEEEEEC-CceEEEEE
Confidence 45666789999999999999985 89999996
No 207
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=95.22 E-value=0.032 Score=33.70 Aligned_cols=29 Identities=34% Similarity=0.527 Sum_probs=17.2
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 013460 298 KELPAGAIVGIVLGAVFLVALALLALYFC 326 (442)
Q Consensus 298 ~~~~~~~ii~iv~~~~~~~~~~~~~~~~~ 326 (442)
+..+...+++++++.++.+++++...+++
T Consensus 6 ~~ls~GaIAGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 6 RGLTGGEIVAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCceeeeehHHHHHHHHHHHHHHHH
Confidence 44567788888887765544444333333
No 208
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=95.21 E-value=0.011 Score=54.68 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=23.4
Q ss_pred cceeccCccceEEEEEecCCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
.+.||+|+||.||+|.. +|+.||||+
T Consensus 36 ~~~lg~G~~g~Vy~~~~-~~~~vavK~ 61 (307)
T 2nru_A 36 GNKMGEGGFGVVYKGYV-NNTTVAVKK 61 (307)
T ss_dssp CCEEEECSSEEEEEEES-SSCEEEEEE
T ss_pred CCccccCCCeEEEEEEE-CCceEEEEE
Confidence 46899999999999997 688999996
No 209
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=95.21 E-value=0.0075 Score=57.22 Aligned_cols=31 Identities=39% Similarity=0.456 Sum_probs=26.6
Q ss_pred CCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
.|...+.||+|+||.||+|.- .+|+.||||+
T Consensus 55 ~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~ 86 (348)
T 1u5q_A 55 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKK 86 (348)
T ss_dssp HEEEEEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred heeeeeEEccCCCEEEEEEEEccCCeEEEEEE
Confidence 355667899999999999985 6789999996
No 210
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=95.19 E-value=0.01 Score=57.03 Aligned_cols=27 Identities=19% Similarity=0.043 Sum_probs=25.0
Q ss_pred cceeccCccceEEEEEecCCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
...||+|+||.||+|.-++|+.||||.
T Consensus 100 ~~~IG~Gk~a~VY~a~d~~G~~vAvKi 126 (397)
T 4gyi_A 100 GSRIGVGKESDIMIVADEKGKQKVLKI 126 (397)
T ss_dssp EEEEEECSSEEEEEEECTTCCEEEEEE
T ss_pred cCEeeeCCceEEEEEECCCCCEEEEEE
Confidence 468999999999999999999999994
No 211
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=95.09 E-value=0.0082 Score=56.56 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=23.8
Q ss_pred cceeccCccceEEEEEec-CCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
.++||+|+||.||+|... +|+.||||+
T Consensus 34 ~~~lG~G~~g~V~~~~~~~~~~~vavK~ 61 (336)
T 3fhr_A 34 KQVLGLGVNGKVLECFHRRTGQKCALKL 61 (336)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEE
T ss_pred ceeeeeCCCeEEEEEEECCCCCEEEEEE
Confidence 357999999999999886 689999996
No 212
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=95.09 E-value=0.0085 Score=57.28 Aligned_cols=30 Identities=7% Similarity=-0.156 Sum_probs=25.6
Q ss_pred CCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
|...+.||+|+||.||+|.. .+|+.||||+
T Consensus 64 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~ 94 (371)
T 3q60_A 64 LKLVEPLRVGDRSVVFLVRDVERLEDFALKV 94 (371)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred eeeeeeccCCCCEEEEEEEECCCCceeEEEE
Confidence 44467899999999999996 4789999996
No 213
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=95.06 E-value=0.0089 Score=55.45 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=26.4
Q ss_pred cCCCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 409 TNSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 409 T~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
.++|.-.+.||+|+||.||+|.. .+|+.||||+
T Consensus 30 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~ 63 (312)
T 2iwi_A 30 EAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKV 63 (312)
T ss_dssp ---CEEEEEEEEETTEEEEEEECTTTCCEEEEEE
T ss_pred hhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEE
Confidence 45666678999999999999976 5688999996
No 214
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=95.04 E-value=0.0079 Score=57.50 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=24.5
Q ss_pred CCccceeccCccceEEEEEec------CCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEFA------NGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L~------~G~~VAVKr 441 (442)
|.-.+.||+|+||.||+|... +++.||||+
T Consensus 73 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~ 108 (367)
T 3l9p_A 73 ITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKT 108 (367)
T ss_dssp EEEEEECCCCSSSCEEEEEECC-----CCEEEEEEE
T ss_pred eEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEe
Confidence 344578999999999999963 466899997
No 215
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=95.01 E-value=0.0081 Score=57.51 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=24.2
Q ss_pred CCccceeccCccceEEEEEe--------cCCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEF--------ANGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L--------~~G~~VAVKr 441 (442)
|.-.+.||+|+||.||+|.. .++..||||+
T Consensus 83 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~ 120 (370)
T 2psq_A 83 LTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKM 120 (370)
T ss_dssp EEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEE
T ss_pred CEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEE
Confidence 34467899999999999986 3456899996
No 216
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=94.99 E-value=0.011 Score=55.86 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=26.9
Q ss_pred CCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
++|.-.+.||+|+||.||+|.. +|+.||||+
T Consensus 31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~ 61 (348)
T 2pml_X 31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKK 61 (348)
T ss_dssp TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEE
T ss_pred CceEEEEEEcCCCCeEEEEEEc-CCceEEEEE
Confidence 3455567899999999999999 899999996
No 217
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=94.96 E-value=0.0081 Score=57.47 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=22.7
Q ss_pred CCCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
+.|...+.||+|+||.||+|.- .+|+.||||+
T Consensus 29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~ 61 (367)
T 2fst_X 29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKK 61 (367)
T ss_dssp TTEEEEEECC----CCEEEEEETTTTEEEEEEE
T ss_pred CceEEeeEEeecCCeEEEEEEECCCCCEEEEEE
Confidence 4455567899999999999974 6788999997
No 218
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=94.95 E-value=0.0087 Score=60.40 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=26.1
Q ss_pred CCccceeccCccceEEEEEecCCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
|.-.+.||+|+||.||+|...++..||||+
T Consensus 269 ~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~ 298 (535)
T 2h8h_A 269 LRLEVKLGQGCFGEVWMGTWNGTTRVAIKT 298 (535)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTEEEEEEE
T ss_pred hhhheecccCCCeEEEEEEECCCceEEEEE
Confidence 333678999999999999999888999996
No 219
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=94.94 E-value=0.0051 Score=57.14 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=28.1
Q ss_pred HHHHhhcCCCCccceeccCccceEEEEEecC----CcEEEEec
Q 013460 403 ASLQTATNSFSQEFLIGEGSLGRVYRAEFAN----GKVIYCVR 441 (442)
Q Consensus 403 ~eL~~AT~~F~~~~~IG~GgfG~VYkg~L~~----G~~VAVKr 441 (442)
+++....++|.-.++||+|+||.||+|.... +..||||+
T Consensus 27 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~ 69 (313)
T 3brb_A 27 EDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKT 69 (313)
T ss_dssp TTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEE
T ss_pred HhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEE
Confidence 3444445556667899999999999998753 45799996
No 220
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=94.93 E-value=0.0092 Score=57.30 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=26.2
Q ss_pred CCCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
+.|.-.++||+|+||+||+|.- .+|+.||||+
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~ 69 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKV 69 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEE
Confidence 3455567899999999999975 5678999996
No 221
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=94.91 E-value=0.011 Score=57.85 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=25.1
Q ss_pred CCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
|.-.++||+|+||.||+|.-. +|+.||||+
T Consensus 99 y~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~ 129 (429)
T 3kvw_A 99 YEVLKVIGKGSFGQVVKAYDHKVHQHVALKM 129 (429)
T ss_dssp EEEEEEEEESSSEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEcccCccEEEEEEEECCCCcEEEEEE
Confidence 444678999999999999764 478999996
No 222
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=94.90 E-value=0.009 Score=57.72 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=25.0
Q ss_pred ccceeccCccceEEEEEecCCcEEEEec
Q 013460 414 QEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 414 ~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
..++||+|+||+||+|...++..|||||
T Consensus 44 ~~~~lG~G~~g~V~~a~~~~~~~~aikk 71 (394)
T 4e7w_A 44 NCKVIGNGSFGVVFQAKLVESDEVAIKK 71 (394)
T ss_dssp EEEEEEEETTEEEEEEEETTTEEEEEEE
T ss_pred EeEEEeeCCCeEEEEEEECCCCeEEEEE
Confidence 3578999999999999998888899997
No 223
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=94.83 E-value=0.0098 Score=55.87 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=23.2
Q ss_pred CCccceeccCccceEEEEEe--------cCCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEF--------ANGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L--------~~G~~VAVKr 441 (442)
|.-.+.||+|+||.||+|.. .++..||||+
T Consensus 37 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~ 74 (334)
T 2pvf_A 37 LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKM 74 (334)
T ss_dssp EEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEE
T ss_pred eEEeeEEeecCceeEEEeEeccccccccccceEEEEee
Confidence 33467899999999999987 3577899996
No 224
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=94.80 E-value=0.01 Score=58.46 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=17.9
Q ss_pred CCCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
+.|.-.++||+|+||+||+|.- .+|+.||||+
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~ 85 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKK 85 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEE
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEE
Confidence 3455567899999999999976 4688999996
No 225
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=94.79 E-value=0.0047 Score=61.72 Aligned_cols=31 Identities=16% Similarity=0.377 Sum_probs=26.2
Q ss_pred CCCccceeccCccceEEEEEecC-CcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEFAN-GKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L~~-G~~VAVKr 441 (442)
+|.-.+.||+|+||.||+|...+ |..||||+
T Consensus 221 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~ 252 (495)
T 1opk_A 221 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKT 252 (495)
T ss_dssp GEEEEEESGGGTTSSEEEEEEGGGTEEEEEEE
T ss_pred HceeeeEecCCCCeEEEEEEEcCCCeEEEEEE
Confidence 34446789999999999999975 78999996
No 226
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=94.75 E-value=0.017 Score=53.88 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=23.5
Q ss_pred cceeccCccceEEEEEec-----CCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFA-----NGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~-----~G~~VAVKr 441 (442)
.+.||+|+||.||++.+. +|+.||||+
T Consensus 36 ~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~ 67 (318)
T 3lxp_A 36 IRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKA 67 (318)
T ss_dssp EEEEEECSSEEEEEEEECSCC--CCEEEEEEE
T ss_pred hheecCCCCeEEEEEEEccCCCCCCcEEEEEE
Confidence 468999999999999873 688999996
No 227
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=94.74 E-value=0.012 Score=54.47 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=23.5
Q ss_pred CCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
|.-.+.||+|+||.||+|.. .+|+.||||+
T Consensus 34 y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~ 64 (310)
T 2wqm_A 34 FRIEKKIGRGQFSEVYRAACLLDGVPVALKK 64 (310)
T ss_dssp EEEEEEEECC--CEEEEEEETTTCCEEEEEE
T ss_pred eEEEEeecCCCCceEEEEEEcCCCceEEEEe
Confidence 44467899999999999986 5789999995
No 228
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=94.71 E-value=0.011 Score=56.41 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=26.8
Q ss_pred CCCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
+.|...+.||+|+||.||+|.- .+|+.||||+
T Consensus 42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~ 74 (371)
T 4exu_A 42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKK 74 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEE
Confidence 4555577899999999999986 4688999996
No 229
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=94.71 E-value=0.01 Score=55.69 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=25.9
Q ss_pred CCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
+|...+.||+|+||+||+|.- .+|+.||||+
T Consensus 35 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~ 66 (329)
T 3gbz_A 35 RYRRITKLGEGTYGEVYKAIDTVTNETVAIKR 66 (329)
T ss_dssp GEEEEEEEEECSSSEEEEEEETTTTEEEEEEE
T ss_pred hEEEEEEEEecCCeEEEEEEECCCCceEEEEE
Confidence 344567899999999999975 5788999996
No 230
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=94.69 E-value=0.067 Score=33.31 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 013460 304 AIVGIVLGAVFLVALALLALYFCIR 328 (442)
Q Consensus 304 ~ii~iv~~~~~~~~~~~~~~~~~~r 328 (442)
+..+++.++++++++++.++++++|
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhh
Confidence 4444444444444444333334443
No 231
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=94.66 E-value=0.012 Score=56.45 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=19.2
Q ss_pred ccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 414 QEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 414 ~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
..++||+|+||.||+|.. .+|+.||||+
T Consensus 93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~ 121 (373)
T 2x4f_A 93 KTEILGGGRFGQVHKCEETATGLKLAAKI 121 (373)
T ss_dssp EEEECC-----CEEEEEETTTCCEEEEEE
T ss_pred cceEEecCcCEEEEEEEEcCCCcEEEEEE
Confidence 356899999999999987 5688999995
No 232
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=94.60 E-value=0.013 Score=56.78 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=25.6
Q ss_pred CCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
+|.-.++||+|+||.||+|... +|+.||||+
T Consensus 53 ~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~ 84 (396)
T 4dc2_A 53 DFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRV 84 (396)
T ss_dssp GEEEEEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred HcEEEEEEeeCCCeEEEEEEECCCCCEEEEEE
Confidence 3445679999999999999985 467899995
No 233
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=94.59 E-value=0.01 Score=55.83 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=27.1
Q ss_pred CCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
++|.-.+.||+|+||.||+|.. +|+.||||+
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~ 72 (342)
T 1b6c_B 42 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKI 72 (342)
T ss_dssp HHCEEEEEEEEETTEEEEEEEE-TTEEEEEEE
T ss_pred ccEEEEeeecCCCCcEEEEEEE-cCccEEEEE
Confidence 4566678999999999999998 589999996
No 234
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=94.56 E-value=0.067 Score=33.37 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 013460 304 AIVGIVLGAVFLVALALLALYFCIR 328 (442)
Q Consensus 304 ~ii~iv~~~~~~~~~~~~~~~~~~r 328 (442)
+..+++.++++++++++.++++++|
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhh
Confidence 4455555554444444333344343
No 235
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=94.55 E-value=0.012 Score=57.86 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=25.2
Q ss_pred CCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
+|.-.+.||+|+||.||+|... |+.||||+
T Consensus 194 ~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~ 223 (450)
T 1k9a_A 194 ELKLLQTIGKGEFGDVMLGDYR-GNKVAVKC 223 (450)
T ss_dssp GEEEEEEEEECSSEEEEEEEET-TEEEEEEE
T ss_pred HeEEEeeecCcCCeeEEEEEec-CCeEEEEE
Confidence 3444678999999999999985 78999995
No 236
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=94.53 E-value=0.014 Score=54.54 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=25.3
Q ss_pred CCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
|.-.+.||+|+||.||+|.- .+|+.||||.
T Consensus 38 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~ 68 (330)
T 3nsz_A 38 YQLVRKLGRGKYSEVFEAINITNNEKVVVKI 68 (330)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEE
T ss_pred eEEEEEecccCCeEEEEEEECCCCcEEEEEE
Confidence 44457899999999999975 6788999995
No 237
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=94.53 E-value=0.014 Score=58.92 Aligned_cols=32 Identities=25% Similarity=0.607 Sum_probs=27.7
Q ss_pred CCCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
++|...++||+|+||.||+|... +|+.||||+
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~ 217 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKK 217 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEE
Confidence 55666788999999999999985 689999996
No 238
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=94.50 E-value=0.012 Score=54.88 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=25.3
Q ss_pred CCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
|.-.++||+|+||.||+|.. .+|+.||||+
T Consensus 30 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~ 60 (337)
T 3ll6_A 30 LRVRRVLAEGGFAFVYEAQDVGSGREYALKR 60 (337)
T ss_dssp EEEEEEEECCSSEEEEEEEETTTCCEEEEEE
T ss_pred EEEEEEEccCCceEEEEEEECCCCcEEEEEE
Confidence 33467899999999999986 4788999995
No 239
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=94.50 E-value=0.015 Score=55.24 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=25.5
Q ss_pred CCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
|...+.||+|+||.||+|... +|+.||||.
T Consensus 43 y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~ 73 (350)
T 1rdq_E 43 FDRIKTLGTGSFGRVMLVKHKESGNHYAMKI 73 (350)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEE
T ss_pred CEEEEEeecCcCcEEEEEEECCCCCEEEEEE
Confidence 444678999999999999875 688999995
No 240
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=94.48 E-value=0.016 Score=53.75 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=22.3
Q ss_pred CCCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
+.|...+.||+|+||.||+|... +|+.||||+
T Consensus 29 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~ 61 (314)
T 3com_A 29 EVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQ 61 (314)
T ss_dssp -CEEEEEECC----CEEEEEEETTTCCEEEEEE
T ss_pred hhhhhheeeccCCCeEEEEEEECCCCCEEEEEe
Confidence 34555678999999999999885 488999995
No 241
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=94.47 E-value=0.018 Score=53.84 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=23.7
Q ss_pred cceeccCccceEEEEEec-CCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
.++||+|+||.||+|... +|+.||||.
T Consensus 34 ~~~lG~G~~g~V~~~~~~~~~~~vavK~ 61 (327)
T 3lm5_A 34 SKELGRGKFAVVRQCISKSTGQEYAAKF 61 (327)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEE
T ss_pred cceeCCCCCeEEEEEEECCCCCEEEEEE
Confidence 468999999999999875 588999995
No 242
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=94.46 E-value=0.015 Score=55.15 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=25.3
Q ss_pred CCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
|...+.||+|+||.||+|... +|+.||||+
T Consensus 35 y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~ 65 (360)
T 3eqc_A 35 FEKISELGAGNGGVVFKVSHKPSGLVMARKL 65 (360)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEE
T ss_pred ceeeeeecCCCCeEEEEEEECCCCcEEEEEE
Confidence 444678999999999999885 678999996
No 243
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=94.45 E-value=0.013 Score=59.57 Aligned_cols=33 Identities=30% Similarity=0.636 Sum_probs=28.5
Q ss_pred cCCCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 409 TNSFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 409 T~~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
.++|...++||+|+||.||+|... +|+.||||+
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~ 216 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKK 216 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEE
Confidence 455777789999999999999884 689999996
No 244
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=94.41 E-value=0.011 Score=56.12 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=23.8
Q ss_pred CCccceeccCccceEEEEEecC---------CcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEFAN---------GKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L~~---------G~~VAVKr 441 (442)
|.-.+.||+|+||.||+|.... |+.||||.
T Consensus 44 y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~ 82 (352)
T 2jii_A 44 WKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKL 82 (352)
T ss_dssp EEEEEEEEEETTEEEEEEEECC-----------CEEEEE
T ss_pred EEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEE
Confidence 4446789999999999999864 88999996
No 245
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=94.39 E-value=0.014 Score=54.25 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=23.6
Q ss_pred CCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
|.-.+.||+|+||.||++.- .+|+.||||+
T Consensus 31 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~ 61 (317)
T 2buj_A 31 YLFIQKLGEGGFSYVDLVEGLHDGHFYALKR 61 (317)
T ss_dssp EEEEEEEEC--CEEEEEEEETTTCCEEEEEE
T ss_pred EEEEEEecCCCCeEEEEEEecCCCcEEEEEE
Confidence 34467899999999999987 6789999995
No 246
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=94.34 E-value=0.016 Score=57.36 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=26.7
Q ss_pred CCCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
+.|...+.||+|+||+||+|.- .+|+.||||+
T Consensus 62 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~ 94 (464)
T 3ttj_A 62 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKK 94 (464)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEEeecCCCeEEEEEEECCCCCEEEEEE
Confidence 4555577899999999999975 5688999996
No 247
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=94.33 E-value=0.019 Score=55.85 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=27.3
Q ss_pred cCCCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 409 TNSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 409 T~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
.++|.-.+.||+|+||.||+|.. .+|+.||||.
T Consensus 134 ~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~ 167 (419)
T 3i6u_A 134 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRI 167 (419)
T ss_dssp HTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEE
T ss_pred hccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEE
Confidence 35666678899999999999987 4578999995
No 248
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=94.33 E-value=0.011 Score=55.76 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=26.5
Q ss_pred cCCCCccceeccCccceEEEEEe------cCCcEEEEec
Q 013460 409 TNSFSQEFLIGEGSLGRVYRAEF------ANGKVIYCVR 441 (442)
Q Consensus 409 T~~F~~~~~IG~GgfG~VYkg~L------~~G~~VAVKr 441 (442)
.++|.-.+.||+|+||.||+|.. .++..||||+
T Consensus 44 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~ 82 (344)
T 1rjb_A 44 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKM 82 (344)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEE
T ss_pred HHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEe
Confidence 34555578999999999999996 3456899996
No 249
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=94.31 E-value=0.014 Score=56.12 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=24.3
Q ss_pred CCCccceeccCccceEEEEEe--------cCCcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEF--------ANGKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L--------~~G~~VAVKr 441 (442)
.|.-.+.||+|+||.||+|.. .++..||||+
T Consensus 70 ~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~ 108 (382)
T 3tt0_A 70 RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKM 108 (382)
T ss_dssp GEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEE
T ss_pred heEeeeEEecCCCeEEEEEEEccccccccccceEEEEEe
Confidence 344467899999999999986 3346799996
No 250
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=94.31 E-value=0.02 Score=53.08 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=26.0
Q ss_pred CCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
+|.-.+.||+|+||.||+|... +|+.||||.
T Consensus 35 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~ 66 (309)
T 2h34_A 35 PYRLRRLVGRGGMGDVYEAEDTVRERIVALKL 66 (309)
T ss_dssp CEEEEEEEEECSSSEEEEEEETTTTEEEEEEE
T ss_pred cEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEe
Confidence 4445678999999999999875 688999996
No 251
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=94.29 E-value=0.018 Score=55.14 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=25.6
Q ss_pred CCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
+|.-.++||+|+||.||+|... +|+.||||.
T Consensus 39 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~ 70 (373)
T 2r5t_A 39 DFHFLKVIGKGSFGKVLLARHKAEEVFYAVKV 70 (373)
T ss_dssp GEEEEEEEECCTTCEEEEEEETTTCCEEEEEE
T ss_pred heEEEEEEeeCCCeEEEEEEEcCCCCEEEEEE
Confidence 3444679999999999999985 477899995
No 252
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=94.22 E-value=0.013 Score=57.53 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=26.5
Q ss_pred CCCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
++|...++||+|+||.||+|.- .+|+.||||+
T Consensus 148 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~ 180 (446)
T 4ejn_A 148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKI 180 (446)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEE
T ss_pred HHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEE
Confidence 3455568999999999999986 5688999995
No 253
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=94.22 E-value=0.017 Score=54.02 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=23.8
Q ss_pred cceeccCccceEEEEEe-----cCCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEF-----ANGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L-----~~G~~VAVKr 441 (442)
.+.||+|+||.||+|.+ .+|+.||||+
T Consensus 46 ~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~ 77 (326)
T 2w1i_A 46 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKK 77 (326)
T ss_dssp EEEEECCSSEEEEEEEECTTSSSCCEEEEEEE
T ss_pred eeeeccCCCeEEEEEEeccccCCCceEEEEEE
Confidence 56899999999999985 4688999996
No 254
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=94.13 E-value=0.019 Score=53.63 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=22.0
Q ss_pred CCCccceeccCccceEEEEEe------cCCcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEF------ANGKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L------~~G~~VAVKr 441 (442)
+|.-.+.||+|+||.||+|.. .+|..||||+
T Consensus 31 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~ 67 (327)
T 2yfx_A 31 NITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKT 67 (327)
T ss_dssp GCEEEEECC--CSSCEEEEEC--------CCEEEEEE
T ss_pred heEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEE
Confidence 344467899999999999985 3567899996
No 255
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=94.11 E-value=0.021 Score=58.91 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=22.6
Q ss_pred cceeccCccceEEEEEec---CCcEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFA---NGKVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~---~G~~VAVKr 441 (442)
++.||+|+||.||+|.+. .++.||||+
T Consensus 374 ~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~ 403 (635)
T 4fl3_A 374 DKELGSGNFGTVKKGYYQMKKVVKTVAVKI 403 (635)
T ss_dssp EEEEEECSSEEEEEEEEECSSCEEEEEEEE
T ss_pred CCEeccCCCEEEEEEEEcCCCcceEEEEEE
Confidence 357999999999999774 457899996
No 256
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=94.04 E-value=0.019 Score=58.38 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=25.6
Q ss_pred CCCccceeccCccceEEEEEe-cCCcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEF-ANGKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L-~~G~~VAVKr 441 (442)
+|.-.+.||+|+||.||+|.- .+|+.||||+
T Consensus 158 ~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~ 189 (573)
T 3uto_A 158 HYDIHEELGTGAFGVVHRVTERATGNNFAAKF 189 (573)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTCCEEEEEE
T ss_pred ccEEEEEEeeccCeEEEEEEECCCCCEEEEEE
Confidence 344456899999999999987 5689999995
No 257
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=93.94 E-value=0.013 Score=55.42 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=19.3
Q ss_pred CCccceeccCccceEEEEEec----CCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEFA----NGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L~----~G~~VAVKr 441 (442)
|.-.+.||+|+||.||+|... ++..||||+
T Consensus 39 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~ 72 (345)
T 2v62_A 39 WVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKV 72 (345)
T ss_dssp EEEEEEC------CEEEEEESSSCGGGCCEEEEE
T ss_pred EEEEeeEeecCCeEEEEEEecCCCCccceEEEEe
Confidence 444678999999999999986 577899996
No 258
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=93.89 E-value=0.025 Score=58.75 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=27.0
Q ss_pred CCCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
++|.-.++||+|+||.||+|... +|+.||||+
T Consensus 341 ~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~ 373 (674)
T 3pfq_A 341 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKI 373 (674)
T ss_dssp TTEEEEEESSBTTTBCEEEEEESSSCCEEEEEE
T ss_pred cceEEEEEEccCCCEEEEEEEECCCCcEEEEEE
Confidence 45666789999999999999875 578899996
No 259
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=93.76 E-value=0.028 Score=57.71 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=22.0
Q ss_pred eeccCccceEEEEEec---CCcEEEEec
Q 013460 417 LIGEGSLGRVYRAEFA---NGKVIYCVR 441 (442)
Q Consensus 417 ~IG~GgfG~VYkg~L~---~G~~VAVKr 441 (442)
.||+|+||.||+|++. ++..||||+
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~ 370 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKV 370 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEE
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEE
Confidence 6999999999999885 566899996
No 260
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=93.73 E-value=0.032 Score=53.96 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=23.1
Q ss_pred ceeccCccceEEEEEec-CCcEEEEec
Q 013460 416 FLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 416 ~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
++||+|+||.||+|... +|+.||||+
T Consensus 68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~ 94 (400)
T 1nxk_A 68 QVLGLGINGKVLQIFNKRTQEKFALKM 94 (400)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEE
T ss_pred ceeeeccCeEEEEEEECCCCCEEEEEE
Confidence 58999999999999874 578999996
No 261
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=93.63 E-value=0.027 Score=54.25 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=25.9
Q ss_pred CCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
.|.-.+.||+|+||.||+|... +|+.||+|.
T Consensus 52 ~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~ 83 (387)
T 1kob_A 52 YYDILEELGSGAFGVVHRCVEKATGRVFVAKF 83 (387)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTCCEEEEEE
T ss_pred ceEEEEEEecCCCEEEEEEEECCCCCEEEEEE
Confidence 4555678999999999999874 678999985
No 262
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=93.61 E-value=0.026 Score=54.02 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=21.7
Q ss_pred cceeccCccceEEEEEecC--C--cEEEEec
Q 013460 415 EFLIGEGSLGRVYRAEFAN--G--KVIYCVR 441 (442)
Q Consensus 415 ~~~IG~GgfG~VYkg~L~~--G--~~VAVKr 441 (442)
.++||+|+||.||+|...+ + ..||||+
T Consensus 94 ~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~ 124 (373)
T 3c1x_A 94 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKS 124 (373)
T ss_dssp EEEEECCSSSEEEEEEEEETTTEEEEEEEEE
T ss_pred CcEeeeCCCeEEEEEEEECCCCcEEEEEEEE
Confidence 4689999999999998743 2 3689985
No 263
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.54 E-value=0.027 Score=58.63 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=26.7
Q ss_pred CCCCccceeccCccceEEEEEec--CCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFA--NGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~--~G~~VAVKr 441 (442)
+.|.-..+||+|+||.||+|... +|+.||||+
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~ 113 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKG 113 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEE
Confidence 34555678999999999999985 689999995
No 264
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=93.38 E-value=0.026 Score=52.80 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=25.9
Q ss_pred cCCCCccceeccCccceEEEEEecC------CcEEEEec
Q 013460 409 TNSFSQEFLIGEGSLGRVYRAEFAN------GKVIYCVR 441 (442)
Q Consensus 409 T~~F~~~~~IG~GgfG~VYkg~L~~------G~~VAVKr 441 (442)
.++|.-.+.||+|+||.||+|.... +..||||+
T Consensus 45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~ 83 (333)
T 2i1m_A 45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKM 83 (333)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEE
T ss_pred HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHh
Confidence 4556667899999999999998743 24799995
No 265
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=93.28 E-value=0.022 Score=54.22 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=25.9
Q ss_pred CCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
+|.-.+.||+|+||.||+|... +|+.||||.
T Consensus 30 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~ 61 (362)
T 2bdw_A 30 NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKI 61 (362)
T ss_dssp HEEEEEEEEEETTEEEEEEEETTTCCEEEEEE
T ss_pred CeEEeeEEecCCCeEEEEEEECCCCCEEEEEE
Confidence 4455678999999999999874 588999995
No 266
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=93.11 E-value=0.037 Score=51.29 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=25.3
Q ss_pred hcCCCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 408 ATNSFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 408 AT~~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
..++|...++||+|+||.||+|...+ .||||+
T Consensus 31 ~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~ 62 (319)
T 2y4i_B 31 PFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRL 62 (319)
T ss_dssp CCSCEECCCBCCCSSSSEEEEEEESS--SEEEEE
T ss_pred CHHHeEEeeEeccCCceEEEEEEEcC--eEEEEE
Confidence 34555567899999999999999864 488885
No 267
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=93.02 E-value=0.03 Score=52.56 Aligned_cols=30 Identities=13% Similarity=0.308 Sum_probs=24.6
Q ss_pred CCccceeccCccceEEEEEecC-CcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEFAN-GKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L~~-G~~VAVKr 441 (442)
|...++||+|+||.||++...+ |+.||+|.
T Consensus 43 y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~ 73 (335)
T 2owb_A 43 YVRGRFLGKGGFAKCFEISDADTKEVFAGKI 73 (335)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTCCEEEEEE
T ss_pred eEEEEEEeeCCCeEEEEEEECCCCCEEEEEE
Confidence 3345789999999999998854 67899985
No 268
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=92.82 E-value=0.17 Score=31.36 Aligned_cols=10 Identities=30% Similarity=0.687 Sum_probs=5.0
Q ss_pred hhhHHHHHHH
Q 013460 304 AIVGIVLGAV 313 (442)
Q Consensus 304 ~ii~iv~~~~ 313 (442)
.+++.+++++
T Consensus 13 ~Ia~~vVGvl 22 (44)
T 2jwa_A 13 SIISAVVGIL 22 (44)
T ss_dssp HHHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 4555555543
No 269
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=92.75 E-value=0.048 Score=54.44 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=24.0
Q ss_pred CCCCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
+.|...+.||+|+||+||+|... +|+.||||.
T Consensus 36 ~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~ 68 (504)
T 3q5i_A 36 ESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKV 68 (504)
T ss_dssp GTEEEEEEEEC--CEEEEEEEETTTCCEEEEEE
T ss_pred cceEEEeEecccCCeEEEEEEECCCCcEEEEEE
Confidence 34445678999999999999875 567899995
No 270
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=92.21 E-value=0.079 Score=52.66 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=21.9
Q ss_pred CCccceeccCccceEEEEEec-CCcEEEEec
Q 013460 412 FSQEFLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 412 F~~~~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
|...+.||+|+||+||+|.-. +|..||||.
T Consensus 39 y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~ 69 (494)
T 3lij_A 39 YQRVKKLGSGAYGEVLLCRDKVTHVERAIKI 69 (494)
T ss_dssp EEEEEEEECC---EEEEEEETTTCCEEEEEE
T ss_pred eEEeeEEecCCCEEEEEEEECCCCcEEEEEE
Confidence 334578999999999999875 678999995
No 271
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=91.92 E-value=0.05 Score=56.29 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=25.5
Q ss_pred CCCCccceeccCccceEEEEEecC----CcEEEEec
Q 013460 410 NSFSQEFLIGEGSLGRVYRAEFAN----GKVIYCVR 441 (442)
Q Consensus 410 ~~F~~~~~IG~GgfG~VYkg~L~~----G~~VAVKr 441 (442)
+.|.-.+.||+|+||.||+|.... +..||||+
T Consensus 390 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~ 425 (656)
T 2j0j_A 390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKT 425 (656)
T ss_dssp GGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEE
T ss_pred ccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEE
Confidence 445556789999999999999843 45799996
No 272
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=91.62 E-value=0.088 Score=48.63 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=22.5
Q ss_pred CCCccceeccCccceEEEEEecCCcEEEEec
Q 013460 411 SFSQEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 411 ~F~~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
.|.-.+.||+|+||.||+|...+ .||||.
T Consensus 37 ~~~~~~~lG~G~~g~Vy~~~~~~--~~avk~ 65 (307)
T 3lb7_A 37 EVMLSTRIGSGSFGTVYKGKWHG--DVAVKI 65 (307)
T ss_dssp SCCEEEEEEECSSCEEEEEESSS--EEEEEE
T ss_pred ceEEEeEecCCCCeEEEEEEECC--EEEEEE
Confidence 44456789999999999998754 477764
No 273
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=90.39 E-value=0.15 Score=51.23 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=16.3
Q ss_pred ccceeccCccceEEEEEecCCcEEEEec
Q 013460 414 QEFLIGEGSLGRVYRAEFANGKVIYCVR 441 (442)
Q Consensus 414 ~~~~IG~GgfG~VYkg~L~~G~~VAVKr 441 (442)
..++||+|+||.||||.. .++.+|+|+
T Consensus 340 ~~~~LG~G~fg~Vy~~~~-~~~~~~~k~ 366 (540)
T 3en9_A 340 PEHLIGKGAEADIKRDSY-LDFDVIIKE 366 (540)
T ss_dssp --------CCEEEEEEEC-SSCEEEEEE
T ss_pred CCCEEeeCCCEEEEEEEE-CCCeEEEEE
Confidence 357899999999999966 568888886
No 274
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=81.55 E-value=2.1 Score=24.75 Aligned_cols=28 Identities=39% Similarity=0.705 Sum_probs=17.5
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 013460 300 LPAGAIVGIVLGAVFLVALALLALYFCI 327 (442)
Q Consensus 300 ~~~~~ii~iv~~~~~~~~~~~~~~~~~~ 327 (442)
.+...++||+++.++..++++..+|++.
T Consensus 4 L~~gaIaGIVvgdi~~t~~i~~~vy~~~ 31 (33)
T 2l34_A 4 VSPGVLAGIVVGDLVLTVLIALAVYFLG 31 (33)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCcceEEeEeHHHHHHHHHHHHHHhhee
Confidence 3456788888877666555555545443
No 275
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=78.51 E-value=1.3 Score=27.04 Aligned_cols=11 Identities=36% Similarity=0.742 Sum_probs=4.5
Q ss_pred hhhHHHHHHHH
Q 013460 304 AIVGIVLGAVF 314 (442)
Q Consensus 304 ~ii~iv~~~~~ 314 (442)
++++++.++++
T Consensus 15 I~~~vv~Gv~l 25 (41)
T 2k9y_A 15 VIGGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHHHH
T ss_pred EEeehhHHHHH
Confidence 34444444433
No 276
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=68.34 E-value=13 Score=24.97 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013460 305 IVGIVLGAVFLVALALLALYFCIRKNRR 332 (442)
Q Consensus 305 ii~iv~~~~~~~~~~~~~~~~~~r~~~~ 332 (442)
++|-+++.++++.+.+++...+++|+++
T Consensus 13 vlGg~~~lll~~glcI~ccvkcrhRrrq 40 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSVRSRHRRRQ 40 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSSS
T ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4454555555666667766665554433
No 277
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=61.73 E-value=28 Score=22.55 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=11.1
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHH
Q 013460 300 LPAGAIVGIVLGAVFLVALALLALY 324 (442)
Q Consensus 300 ~~~~~ii~iv~~~~~~~~~~~~~~~ 324 (442)
...+++++.+++++++++++..++|
T Consensus 10 vp~wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544444444444333434
No 278
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=60.90 E-value=26 Score=22.61 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=9.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH
Q 013460 302 AGAIVGIVLGAVFLVALALLALY 324 (442)
Q Consensus 302 ~~~ii~iv~~~~~~~~~~~~~~~ 324 (442)
.+++++.+++++++++++..++|
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44544444444444333333334
No 279
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=51.89 E-value=21 Score=22.06 Aligned_cols=29 Identities=10% Similarity=-0.082 Sum_probs=13.9
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 013460 301 PAGAIVGIVLGAVFLVALALLALYFCIRKN 330 (442)
Q Consensus 301 ~~~~ii~iv~~~~~~~~~~~~~~~~~~r~~ 330 (442)
...++.|+++.+ ++++++++++-.+++++
T Consensus 14 A~gVVgGv~~~~-ii~~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 14 ATGMVGALLLLL-VVALGIGLFMRRRHIVR 42 (44)
T ss_dssp THHHHHHHHHHH-HHHHHHHHHHHTTTCCS
T ss_pred EeehhHHHHHHH-HHHHHHHHHhhhhHhhc
Confidence 334444444333 34455555666666543
No 280
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=49.34 E-value=32 Score=20.96 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=10.7
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHH
Q 013460 300 LPAGAIVGIVLGAVFLVALALLALY 324 (442)
Q Consensus 300 ~~~~~ii~iv~~~~~~~~~~~~~~~ 324 (442)
...++++..+++.+++++++...+|
T Consensus 8 vp~wiIi~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344544444444444344333444
No 281
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=39.49 E-value=47 Score=19.69 Aligned_cols=13 Identities=31% Similarity=0.353 Sum_probs=6.3
Q ss_pred hhhHHHHHHHHHH
Q 013460 304 AIVGIVLGAVFLV 316 (442)
Q Consensus 304 ~ii~iv~~~~~~~ 316 (442)
.++.|++++++.+
T Consensus 11 ~i~lII~~vmaGi 23 (40)
T 1afo_A 11 EITLIIFGVMAGV 23 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 4555555544433
No 282
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=36.43 E-value=24 Score=24.94 Aligned_cols=12 Identities=0% Similarity=0.326 Sum_probs=5.5
Q ss_pred hhhHHHHHHHHH
Q 013460 304 AIVGIVLGAVFL 315 (442)
Q Consensus 304 ~ii~iv~~~~~~ 315 (442)
++.+++++++++
T Consensus 13 Iv~gvi~gilli 24 (79)
T 2knc_B 13 VLLSVMGAILLI 24 (79)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 444555554433
No 283
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=31.99 E-value=26 Score=32.95 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=20.0
Q ss_pred ceeccCccceEEEEEec-CCcEEEEec
Q 013460 416 FLIGEGSLGRVYRAEFA-NGKVIYCVR 441 (442)
Q Consensus 416 ~~IG~GgfG~VYkg~L~-~G~~VAVKr 441 (442)
..||.|.++.||++... +|+.|+||.
T Consensus 36 ~~lg~G~~n~vyrv~~~~~~~~~vvK~ 62 (397)
T 2olc_A 36 QEIGDGNLNYVFHIYDQEHDRALIIKQ 62 (397)
T ss_dssp EECCSSSSEEEEEEEC----CEEEEEE
T ss_pred EECCCCceEEEEEEEECCCCcEEEEEe
Confidence 46999999999999875 467899984
No 284
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=30.10 E-value=59 Score=21.92 Aligned_cols=13 Identities=23% Similarity=0.741 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHH
Q 013460 305 IVGIVLGAVFLVA 317 (442)
Q Consensus 305 ii~iv~~~~~~~~ 317 (442)
+.|.+++++++++
T Consensus 19 igGLifA~vLfi~ 31 (67)
T 2jp3_A 19 LGGLIFGGLLCIA 31 (67)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ecchhhHHHHHHH
Confidence 4455555444433
No 285
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.76 E-value=55 Score=24.07 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=14.6
Q ss_pred cccCCCCCCEEEcccCcCCCchhhhhcCCCCCcEEeC
Q 013460 148 SIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDL 184 (442)
Q Consensus 148 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 184 (442)
.|.++.+|+.+.+-.+ ++..-...|.++.+|+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 4444445554444332 22222233444444444443
No 286
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.90 E-value=65 Score=23.63 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=29.3
Q ss_pred CCCchhhhhcCCCCCcEEeCCCCCCCCCCchhccCCCCCCEEEcccC
Q 013460 165 LTQSIGDIFGNLAGLATLDLSFNNFSGDLPNSFISLSNISSLYLQNN 211 (442)
Q Consensus 165 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 211 (442)
++..-...|.++.+|+.+.+-.+ ++..-...|.++.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 33344456777888888877654 34344556777777777776543
No 287
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=24.48 E-value=1.5e+02 Score=20.17 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHH
Q 013460 305 IVGIVLGAVFLV 316 (442)
Q Consensus 305 ii~iv~~~~~~~ 316 (442)
+.|.++++++++
T Consensus 18 iGGLifA~vLfi 29 (72)
T 2jo1_A 18 IGGLVIAGILFI 29 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccchHHHHHHHH
Confidence 345555444433
No 288
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=23.18 E-value=84 Score=19.15 Aligned_cols=6 Identities=0% Similarity=0.025 Sum_probs=2.4
Q ss_pred HHHHHH
Q 013460 307 GIVLGA 312 (442)
Q Consensus 307 ~iv~~~ 312 (442)
++++++
T Consensus 15 gvi~~i 20 (43)
T 2k9j_B 15 SVMGAI 20 (43)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 289
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.16 E-value=87 Score=21.98 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHHHH
Q 013460 305 IVGIVLGAVFLVALA 319 (442)
Q Consensus 305 ii~iv~~~~~~~~~~ 319 (442)
+.+|++++++.++++
T Consensus 10 ~~~Iv~gvi~gilli 24 (79)
T 2knc_B 10 ILVVLLSVMGAILLI 24 (79)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHH
Confidence 344454444443333
No 290
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=21.53 E-value=20 Score=38.17 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCcchhhHHHHHHHHHHHHH
Q 013460 300 LPAGAIVGIVLGAVFLVALA 319 (442)
Q Consensus 300 ~~~~~ii~iv~~~~~~~~~~ 319 (442)
+..+++++|+++++++++++
T Consensus 702 l~~~aii~il~~~~~ll~~~ 721 (880)
T 1q55_A 702 FDLPIILVILGSVLALLILF 721 (880)
T ss_dssp --------------------
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444333
No 291
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=24.21 E-value=24 Score=21.49 Aligned_cols=7 Identities=43% Similarity=1.061 Sum_probs=3.1
Q ss_pred hhhHHHH
Q 013460 304 AIVGIVL 310 (442)
Q Consensus 304 ~ii~iv~ 310 (442)
.++++.+
T Consensus 18 a~iGL~v 24 (43)
T 2llm_A 18 AIIGLMV 24 (43)
Confidence 4444443
Done!