BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013461
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A2B|A Chain A, Crystal Structure Of Serine Palmitoyltransferase From
Sphingobacterium Multivorum With Substrate L-Serine
Length = 398
Score = 147 bits (372), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 103/399 (25%), Positives = 181/399 (45%), Gaps = 74/399 (18%)
Query: 85 IIEEMRCEPPV-----LESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKY 139
I+EE++ + ++S I G+ V+ F S +YLGL +++++ ALEKY
Sbjct: 14 IVEELKAKGLYAYFRPIQSKQDTEVKIDGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKY 73
Query: 140 GVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVAD 199
G G G R GT+D+H++ E +++ ++G +IL+S G + + C + D I+ D
Sbjct: 74 GTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILLD 133
Query: 200 EGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKR------------------ 241
E H I +G LS S V+ + HN+M+ LR L R+ D+ +
Sbjct: 134 ERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLP 193
Query: 242 -----------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFC 284
++S GV+G G G H G+ D +D++ +LA+ GGF
Sbjct: 194 ELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLN-DDVDLIMGTFSKSLASLGGFV 252
Query: 285 TGSARVVDHQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLS 344
G A V+D + ++ +F + A+++++ P+ I KL KNT + L
Sbjct: 253 AGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLL 312
Query: 345 DIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWA---LKEDGVFV-------V 394
D HG + + ESPI+ + + + + W L++DGVFV V
Sbjct: 313 D-HGFDLGAT-ESPILPIFIRSNEKTF------------WVTKMLQDDGVFVNPVVSPAV 358
Query: 395 TSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 433
++ S+ IR + A H+ + +A E + ++
Sbjct: 359 PAEESL---------IRFSLMATHTYDQIDEAIEKMVKV 388
>pdb|3TQX|A Chain A, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase
(Kbl) From Coxiella Burnetii
pdb|3TQX|B Chain B, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase
(Kbl) From Coxiella Burnetii
Length = 399
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 101/381 (26%), Positives = 167/381 (43%), Gaps = 59/381 (15%)
Query: 95 VLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTID 154
++ S + KEV+NF + NYLGL H L+++ + +E+YG G R GT
Sbjct: 29 IITSPQNAEIKVGEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGXASVRFICGTQT 88
Query: 155 VHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSR 214
+H + E I++FLGT D+ILYS D I++DE H I +G+ L +
Sbjct: 89 IHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCK 148
Query: 215 STVVYFKHNDMDSLRNTLERVTADNKR--------------------------------- 241
+ +K+N L L+ R
Sbjct: 149 AQRYRYKNNAXGDLEAKLKEADEKGARFKLIATDGVFSXDGIIADLKSICDLADKYNALV 208
Query: 242 ----SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSARVVDHQRL 296
S++ G +G +GRG E+CGV D++DI+T +G AL GG+ +G +++ R
Sbjct: 209 XVDDSHAVGFIGENGRGTPEYCGV-ADRVDILTGTLGKALGGASGGYTSGHKEIIEWLRN 267
Query: 297 SSSGYVFXXXXXXXXXXXXITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNP 355
S Y+F + +++L+ E P L +L++N+ R G + + N
Sbjct: 268 RSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGXEKLGFQLVPGN- 326
Query: 356 ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVG---IRL 412
PI+ + L D QL + AD L+E G++VV + +P G IR+
Sbjct: 327 -HPIIPVXL--------GDAQLATNXADHLLQE-GIYVVGFSYPV-----VPXGKARIRV 371
Query: 413 FVSAAHSEADLVKACESLKRI 433
SA H++ L +A E+ ++
Sbjct: 372 QXSAVHTQQQLDRAIEAFGQV 392
>pdb|2X8U|A Chain A, Sphingomonas Wittichii Serine Palmitoyltransferase
pdb|2X8U|B Chain B, Sphingomonas Wittichii Serine Palmitoyltransferase
Length = 412
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 135/329 (41%), Gaps = 47/329 (14%)
Query: 105 IISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIA 164
+I+G++ + + NY+G+ ++ + AL+++G G+ G R GT H CE +
Sbjct: 40 MINGRKTILLGTYNYMGMTFDPDVIAAGKQALDEFGSGTTGSRVLNGTYQGHKACEDALK 99
Query: 165 KFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND 224
+F GT +I++S G I KGD I+ D H I +G +L + +V F+HN
Sbjct: 100 EFYGTEHAIVFSTGYQANLGMISTLAGKGDYIILDADSHASIYDGCWLGDAEIVRFRHNS 159
Query: 225 MDSLRNTLERVTADNKR-----------------------------------SNSFGVLG 249
++ L L R+ A+ + ++ G G
Sbjct: 160 VEDLDKRLGRLPAEAGKLVVLEGVYSMMGDIAPLQEMVAVSKKHGAMILVDEAHGMGFFG 219
Query: 250 RSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXXXX 309
GRG+ E GV D +D V ++ T GGFC + + RL YVF
Sbjct: 220 EHGRGVFEEAGVEAD-VDFVVGTFSXSVGTVGGFCVSNHPKFEVLRLVCRPYVFTASLPP 278
Query: 310 XXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTG 369
T+I L D L KN+ L GL D+ +S I+ +IL
Sbjct: 279 SVVATAATSIRKLMHAGDKRAHLWKNSRRLHQGLRDMGYKLGTETAQSAIIAVILT---- 334
Query: 370 SMKNDLQLLEDIADW-ALKEDGVFVVTSK 397
+ + +A W L E G++V T++
Sbjct: 335 ------DMAQAVALWQGLLEAGLYVNTAR 357
>pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase
pdb|1FC4|B Chain B, 2-Amino-3-Ketobutyrate Coa Ligase
Length = 401
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/368 (24%), Positives = 148/368 (40%), Gaps = 52/368 (14%)
Query: 104 TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARI 163
T+ G V+NF + NYLGL H L+ + + + +G G R GT D H + E ++
Sbjct: 40 TVADGSHVINFCANNYLGLANHPDLIAAAKAGXDSHGFGXASVRFICGTQDSHKELEQKL 99
Query: 164 AKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN 223
A FLG D+ILYS D I++D H I +G+ L ++ + +N
Sbjct: 100 AAFLGXEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANN 159
Query: 224 DMDSLRNTLERVTADNKR-------------------------------------SNSFG 246
D L L+ R S++ G
Sbjct: 160 DXQELEARLKEAREAGARHVLIATDGVFSXDGVIANLKGVCDLADKYDALVXVDDSHAVG 219
Query: 247 VLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSARVVDHQRLSSSGYVFXX 305
+G +GRG E+C V ++DI+T +G AL GG+ VV+ R S Y+F
Sbjct: 220 FVGENGRGSHEYCDV-XGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSN 278
Query: 306 XXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE 365
I ++ +E +L +L N R S G ++A + I+ + L
Sbjct: 279 SLAPAIVAASIKVLEXVEAGSELRDRLWANARQFREQXS-AAGFTLA-GADHAIIPVXLG 336
Query: 366 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVK 425
+ + K + L+++G++V ++ K + IR SAAH+ + +
Sbjct: 337 DAVVAQKFARE---------LQKEGIYVTGFFYPVVPKGQAR--IRTQXSAAHTPEQITR 385
Query: 426 ACESLKRI 433
A E+ RI
Sbjct: 386 AVEAFTRI 393
>pdb|2W8T|A Chain A, Spt With Plp, N100c
Length = 427
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 126/308 (40%), Gaps = 39/308 (12%)
Query: 95 VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
V+E P +I GK+ + + NY+G+ ++ + ALEK+G G+CG R GT
Sbjct: 49 VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTF 108
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
H++ E + F GT +I++S G I KG+ ++ D H I +G
Sbjct: 109 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 168
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKR-------------------------------- 241
+ +V F+HN ++ L L R+ + +
Sbjct: 169 NAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVL 228
Query: 242 ---SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSS 298
++S G G +GRG+ E G+ +ID V ++ T GGF + + RL+
Sbjct: 229 VDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSXSVGTVGGFVVSNHPKFEAVRLAC 287
Query: 299 SGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP-ES 357
Y+F T+I L + +L N L GL + G + + +S
Sbjct: 288 RPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDS 346
Query: 358 PIVFLILE 365
IV ++LE
Sbjct: 347 AIVAVMLE 354
>pdb|2W8W|A Chain A, N100y Spt With Plp-Ser
Length = 427
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 125/308 (40%), Gaps = 39/308 (12%)
Query: 95 VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
V+E P +I GK+ + + NY+G+ ++ + ALEK+G G+ G R GT
Sbjct: 49 VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTYGSRMLNGTF 108
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
H++ E + F GT +I++S G I KG+ ++ D H I +G
Sbjct: 109 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 168
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKR-------------------------------- 241
+ +V F+HN ++ L L R+ + +
Sbjct: 169 NAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVL 228
Query: 242 ---SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSS 298
++S G G +GRG+ E G+ +ID V ++ T GGF + + RL+
Sbjct: 229 VDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLAC 287
Query: 299 SGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP-ES 357
Y+F T+I L + +L N L GL + G + + +S
Sbjct: 288 RPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDS 346
Query: 358 PIVFLILE 365
IV ++LE
Sbjct: 347 AIVAVMLE 354
>pdb|2W8J|A Chain A, Spt With Plp-Ser
pdb|2XBN|A Chain A, Inhibition Of The Plp-Dependent Enzyme Serine
Palmitoyltransferase By Cycloserine: Evidence For A
Novel Decarboxylative Mechanism Of Inactivation
Length = 427
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 125/308 (40%), Gaps = 39/308 (12%)
Query: 95 VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
V+E P +I GK+ + + NY+G+ ++ + ALEK+G G+ G R GT
Sbjct: 49 VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTNGSRMLNGTF 108
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
H++ E + F GT +I++S G I KG+ ++ D H I +G
Sbjct: 109 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 168
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKR-------------------------------- 241
+ +V F+HN ++ L L R+ + +
Sbjct: 169 NAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVL 228
Query: 242 ---SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSS 298
++S G G +GRG+ E G+ +ID V ++ T GGF + + RL+
Sbjct: 229 VDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLAC 287
Query: 299 SGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP-ES 357
Y+F T+I L + +L N L GL + G + + +S
Sbjct: 288 RPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDS 346
Query: 358 PIVFLILE 365
IV ++LE
Sbjct: 347 AIVAVMLE 354
>pdb|2W8V|A Chain A, Spt With Plp, N100w
Length = 427
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 125/308 (40%), Gaps = 39/308 (12%)
Query: 95 VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
V+E P +I GK+ + + NY+G+ ++ + ALEK+G G+ G R GT
Sbjct: 49 VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTWGSRMLNGTF 108
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
H++ E + F GT +I++S G I KG+ ++ D H I +G
Sbjct: 109 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 168
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKR-------------------------------- 241
+ +V F+HN ++ L L R+ + +
Sbjct: 169 NAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVL 228
Query: 242 ---SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSS 298
++S G G +GRG+ E G+ +ID V ++ T GGF + + RL+
Sbjct: 229 VDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSXSVGTVGGFVVSNHPKFEAVRLAC 287
Query: 299 SGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP-ES 357
Y+F T+I L + +L N L GL + G + + +S
Sbjct: 288 RPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDS 346
Query: 358 PIVFLILE 365
IV ++LE
Sbjct: 347 AIVAVMLE 354
>pdb|2JGT|A Chain A, Low Resolution Structure Of Spt
pdb|2JGT|B Chain B, Low Resolution Structure Of Spt
Length = 422
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 125/308 (40%), Gaps = 39/308 (12%)
Query: 95 VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
V+E P +I GK+ + + NY+G+ ++ + ALEK+G G+ G R GT
Sbjct: 50 VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTNGSRMLNGTF 109
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
H++ E + F GT +I++S G I KG+ ++ D H I +G
Sbjct: 110 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 169
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKR-------------------------------- 241
+ +V F+HN ++ L L R+ + +
Sbjct: 170 NAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVL 229
Query: 242 ---SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSS 298
++S G G +GRG+ E G+ +ID V ++ T GGF + + RL+
Sbjct: 230 VDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLAC 288
Query: 299 SGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP-ES 357
Y+F T+I L + +L N L GL + G + + +S
Sbjct: 289 RPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDS 347
Query: 358 PIVFLILE 365
IV ++LE
Sbjct: 348 AIVAVMLE 355
>pdb|2W8U|A Chain A, Spt With Plp, N100y
Length = 427
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 125/308 (40%), Gaps = 39/308 (12%)
Query: 95 VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
V+E P +I GK+ + + NY+G+ ++ + ALEK+G G+ G R GT
Sbjct: 49 VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTYGSRMLNGTF 108
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
H++ E + F GT +I++S G I KG+ ++ D H I +G
Sbjct: 109 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 168
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKR-------------------------------- 241
+ +V F+HN ++ L L R+ + +
Sbjct: 169 NAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVL 228
Query: 242 ---SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSS 298
++S G G +GRG+ E G+ +ID V ++ T GGF + + RL+
Sbjct: 229 VDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSXSVGTVGGFVVSNHPKFEAVRLAC 287
Query: 299 SGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP-ES 357
Y+F T+I L + +L N L GL + G + + +S
Sbjct: 288 RPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDS 346
Query: 358 PIVFLILE 365
IV ++LE
Sbjct: 347 AIVAVMLE 354
>pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal
Aldimine
Length = 422
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 125/308 (40%), Gaps = 39/308 (12%)
Query: 95 VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
V+E P +I GK+ + + NY+G+ ++ + ALEK+G G+ G R GT
Sbjct: 50 VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTNGSRMLNGTF 109
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
H++ E + F GT +I++S G I KG+ ++ D H I +G
Sbjct: 110 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 169
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKR-------------------------------- 241
+ +V F+HN ++ L L R+ + +
Sbjct: 170 NAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVL 229
Query: 242 ---SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSS 298
++S G G +GRG+ E G+ +ID V ++ T GGF + + RL+
Sbjct: 230 VDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSXSVGTVGGFVVSNHPKFEAVRLAC 288
Query: 299 SGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP-ES 357
Y+F T+I L + +L N L GL + G + + +S
Sbjct: 289 RPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDS 347
Query: 358 PIVFLILE 365
IV ++LE
Sbjct: 348 AIVAVMLE 355
>pdb|4IW7|A Chain A, Crystal Structure Of 8-amino-7-oxononanoate Synthase
(biof) From Francisella Tularensis
Length = 399
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 119/305 (39%), Gaps = 32/305 (10%)
Query: 105 IISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIA 164
I +++F +++YL L L + + +KYG GS G G D E A
Sbjct: 47 FIKDDSIIDFTTSDYLNLSSAHNLKHAIVNGFDKYGFGSKGSNIVCGYTDETQQFEHEFA 106
Query: 165 KFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND 224
KF+ P +I +S G + K D I AD+ +H I +G+ LS++ + +KH
Sbjct: 107 KFINYPRAIFFSSGFMANLAIYSTLFSKHDSIFADKYIHASIIDGIKLSQAKLRRYKHQQ 166
Query: 225 MDSLRN-----------------------------TLERVTADNKRSNSFGVLGRSGRGL 255
+ L++ T E++ D ++SFGVLG++GRG
Sbjct: 167 LSQLQDIYDGKSFITTEGVFSTSGSITQLDKLAKITPEKLIVD--EAHSFGVLGKNGRGA 224
Query: 256 TEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXXXXXXXXXX 315
+ I +G A G + + ++ + Y++
Sbjct: 225 INSFRISYKNCLICVFPLGKAFGGVGAVVCTTEAIAEYLIQFARNYIYTTALPPMILKAA 284
Query: 316 ITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDL 375
+ + LE D +L++N L D L + S SPI + L + +++
Sbjct: 285 LIQLKNLENVNDNRARLQQNITFFNE-LCDAKDLELVSKDLSPIRSIQLNNANLAIRLKD 343
Query: 376 QLLED 380
+L E+
Sbjct: 344 KLFEN 348
>pdb|2BWO|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWP|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
Length = 401
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 95/240 (39%), Gaps = 54/240 (22%)
Query: 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168
+++ + +YLG+ H +L + ALE G GS G R GT H EA IA
Sbjct: 46 QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ 105
Query: 169 TPDSILYSYG-------LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFK 221
++++S LST+ P G +I +D H + G+ + F+
Sbjct: 106 KEAALVFSSAYNANDATLSTLRVLFP-----GLIIYSDSLNHASMIEGIKRNAGPKRIFR 160
Query: 222 HNDMDSLRNTLERVTADNKRS--------------------------------------N 243
HND+ LR E + AD+ + +
Sbjct: 161 HNDVAHLR---ELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVH 217
Query: 244 SFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVF 303
+ G+ G G G+ E G+ + +IDI + A GG+ SAR+VD R + G++F
Sbjct: 218 AVGMYGPRGAGVAERDGL-MHRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIF 276
>pdb|2BWN|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWO|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
Length = 401
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 95/240 (39%), Gaps = 54/240 (22%)
Query: 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168
+++ + +YLG+ H +L + ALE G GS G R GT H EA IA
Sbjct: 46 QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ 105
Query: 169 TPDSILYSYG-------LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFK 221
++++S LST+ P G +I +D H + G+ + F+
Sbjct: 106 KEAALVFSSAYNANDATLSTLRVLFP-----GLIIYSDSLNHASMIEGIKRNAGPKRIFR 160
Query: 222 HNDMDSLRNTLERVTADNKRS--------------------------------------N 243
HND+ LR E + AD+ + +
Sbjct: 161 HNDVAHLR---ELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVH 217
Query: 244 SFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVF 303
+ G+ G G G+ E G+ + +IDI + A GG+ SAR+VD R + G++F
Sbjct: 218 AVGMYGPRGAGVAERDGL-MHRIDIFNGTLAXAYGVFGGYIAASARMVDAVRSYAPGFIF 276
>pdb|1DJ9|A Chain A, Crystal Structure Of 8-Amino-7-Oxonanoate Synthase (Or
7-Keto- 8aminipelargonate Or Kapa Synthase) Complexed
With Plp And The Product 8(S)-Amino-7-Oxonanonoate (Or
Kapa). The Enzyme Of Biotin Biosynthetic Pathway.
pdb|1DJE|A Chain A, Crystal Structure Of The Plp-Bound Form Of
8-Amino-7-Oxonanoate Synthase
Length = 384
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/384 (22%), Positives = 146/384 (38%), Gaps = 61/384 (15%)
Query: 87 EEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGP 146
+ +R PV + AG + ++ +NF+S +YLGL H +++ + E++G+GS G
Sbjct: 18 DALRRRYPVAQ-GAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGS 76
Query: 147 RGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGI 206
G VH E +A++LG ++L+ G + + I K D I AD H +
Sbjct: 77 GHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASL 136
Query: 207 QNGLYLSRSTVVYFKHND-------------------------MDSLRNTLERVTADNKR 241
LS S + F HND MD L + ++
Sbjct: 137 LEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQ 196
Query: 242 SNSF---------GVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 292
N + GV+G GRG C + K +++ G G S+ V D
Sbjct: 197 HNGWLMVDDAHGTGVIGEQGRG---SCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVAD 253
Query: 293 HQRLSSSGYVFXXXXXXXXXXXXITAIDVL--EENPDLITKLKKNTAILRTGLSDI-HGL 349
+ + ++ ++ V+ +E KL R G+ D+ L
Sbjct: 254 YLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTL 313
Query: 350 SIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVG 409
+ + + P++ G LQL E L++ G +V + +P G
Sbjct: 314 ADSCSAIQPLI-------VGDNSRALQLAEK-----LRQQGCWVTGIRPPT-----VPAG 356
Query: 410 I---RLFVSAAHSEADLVKACESL 430
I RL ++AAH D+ + E L
Sbjct: 357 IARLRLTLTAAHEMQDIDRLLEVL 380
>pdb|1BS0|A Chain A, Plp-dependent Acyl-coa Synthase
pdb|2G6W|A Chain A, Suicide Inhibition Of A-Oxamine Synthase: Structures Of
The Covalent Adducts Of 8-Amino-7-Oxonanoate Synthase
With Trifluoroalanine
Length = 384
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/377 (22%), Positives = 144/377 (38%), Gaps = 61/377 (16%)
Query: 94 PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
PV + AG + ++ +NF+S +YLGL H +++ + E++G+GS G G
Sbjct: 25 PVAQ-GAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYS 83
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
VH E +A++LG ++L+ G + + I K D I AD H + LS
Sbjct: 84 VVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLS 143
Query: 214 RSTVVYFKHND-------------------------MDSLRNTLERVTADNKRSNSF--- 245
S + F HND MD L + ++ N +
Sbjct: 144 PSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMV 203
Query: 246 ------GVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSS 299
GV+G GRG C + K +++ G G S+ V D+ +
Sbjct: 204 DDAHGTGVIGEQGRG---SCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFAR 260
Query: 300 GYVFXXXXXXXXXXXXITAIDVL--EENPDLITKLKKNTAILRTGLSDI-HGLSIASNPE 356
++ ++ V+ +E KL R G+ D+ L+ + +
Sbjct: 261 HLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSAI 320
Query: 357 SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVG---IRLF 413
P++ G LQL E L++ G +V + + +P G +RL
Sbjct: 321 QPLI-------VGDNSRALQLAEK-----LRQQGCWV-----TAIRPPTVPAGTARLRLT 363
Query: 414 VSAAHSEADLVKACESL 430
++AAH D+ + E L
Sbjct: 364 LTAAHEMQDIDRLLEVL 380
>pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa
pdb|2WK7|B Chain B, Structure Of Apo Form Of Vibrio Cholerae Cqsa
Length = 393
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 99/265 (37%), Gaps = 45/265 (16%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVY 219
E R+AKF G + +L G + + C+ + D H + G + +
Sbjct: 90 EKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHP 149
Query: 220 FKHNDMDSLRNTLER-----VTADN---------------------------KRSNSFGV 247
F HN+ D LR ++R + D+ S+S G
Sbjct: 150 FMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGT 209
Query: 248 LGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXX 307
G +G GL G+ ++ +TA++ A G + V S +F
Sbjct: 210 HGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAGAIWCNNEVNRCVPFISYPAIFSSTL 268
Query: 308 XXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS 367
T ++++E + L + LR GLS + GL+I S ES I+ L
Sbjct: 269 LPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-GLTIRS--ESQIIGL----E 321
Query: 368 TGSMKNDLQLLEDIADWALKEDGVF 392
TG +N E + D+ L+ +GVF
Sbjct: 322 TGDERNT----EKVRDY-LESNGVF 341
>pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3HQT|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
Length = 409
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 99/265 (37%), Gaps = 45/265 (16%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVY 219
E R+AKF G + +L G + + C+ + D H + G + +
Sbjct: 110 EKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHP 169
Query: 220 FKHNDMDSLRNTLER-----VTADN---------------------------KRSNSFGV 247
F HN+ D LR ++R + D+ S+S G
Sbjct: 170 FMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGT 229
Query: 248 LGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXX 307
G +G GL G+ ++ +TA++ A G + V S +F
Sbjct: 230 HGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAGAIWCNNEVNRCVPFISYPAIFSSTL 288
Query: 308 XXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS 367
T ++++E + L + LR GLS + GL+I S ES I+ L
Sbjct: 289 LPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-GLTIRS--ESQIIGL----E 341
Query: 368 TGSMKNDLQLLEDIADWALKEDGVF 392
TG +N E + D+ L+ +GVF
Sbjct: 342 TGDERNT----EKVRDY-LESNGVF 361
>pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK8|B Chain B, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK9|A Chain A, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WK9|B Chain B, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WKA|A Chain A, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
pdb|2WKA|B Chain B, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
Length = 389
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 99/265 (37%), Gaps = 45/265 (16%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVY 219
E R+AKF G + +L G + + C+ + D H + G + +
Sbjct: 90 EKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHP 149
Query: 220 FKHNDMDSLRNTLER-----VTADN---------------------------KRSNSFGV 247
F HN+ D LR ++R + D+ S+S G
Sbjct: 150 FMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGT 209
Query: 248 LGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXX 307
G +G GL G+ ++ +TA++ A G + V S +F
Sbjct: 210 HGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAGAIWCNNEVNRCVPFISYPAIFSSTL 268
Query: 308 XXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS 367
T ++++E + L + LR GLS + GL+I S ES I+ L
Sbjct: 269 LPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-GLTIRS--ESQIIGL----E 321
Query: 368 TGSMKNDLQLLEDIADWALKEDGVF 392
TG +N E + D+ L+ +GVF
Sbjct: 322 TGDERNT----EKVRDY-LESNGVF 341
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 236 TADNKRSNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQR 295
T D+ + + V G CG P + +D V MG +L +G F A+++ H
Sbjct: 67 TLDSNKQWTNKVTGEKLPECEAVCGKPKNPVDQVQRIMGGSLDAKGSF-PWQAKMISHHN 125
Query: 296 LSS 298
L+S
Sbjct: 126 LTS 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,891,330
Number of Sequences: 62578
Number of extensions: 464942
Number of successful extensions: 1071
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1030
Number of HSP's gapped (non-prelim): 36
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)