Query 013461
Match_columns 442
No_of_seqs 417 out of 2343
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 11:01:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w8t_A SPT, serine palmitoyltr 100.0 1.8E-40 6E-45 333.7 35.0 334 93-439 47-417 (427)
2 3tqx_A 2-amino-3-ketobutyrate 100.0 3.3E-37 1.1E-41 306.3 37.2 332 92-437 26-396 (399)
3 3kki_A CAI-1 autoinducer synth 100.0 2.6E-37 8.7E-42 308.8 28.6 323 99-436 48-403 (409)
4 1fc4_A 2-amino-3-ketobutyrate 100.0 2.1E-35 7.1E-40 293.9 36.9 332 92-437 27-397 (401)
5 3a2b_A Serine palmitoyltransfe 100.0 6.5E-35 2.2E-39 290.1 34.5 332 92-437 26-392 (398)
6 1bs0_A Protein (8-amino-7-oxon 100.0 5.7E-35 1.9E-39 289.1 33.8 326 92-433 22-383 (384)
7 2bwn_A 5-aminolevulinate synth 100.0 9.7E-34 3.3E-38 281.9 29.9 317 107-436 44-399 (401)
8 2oat_A Ornithine aminotransfer 100.0 6.4E-30 2.2E-34 257.6 28.9 334 63-436 37-438 (439)
9 1z7d_A Ornithine aminotransfer 100.0 2.2E-29 7.4E-34 253.3 28.8 315 93-439 48-431 (433)
10 4ao9_A Beta-phenylalanine amin 100.0 1.4E-29 4.7E-34 253.4 25.9 317 92-437 69-446 (454)
11 3hmu_A Aminotransferase, class 100.0 1.2E-29 4E-34 257.8 25.4 323 92-438 37-453 (472)
12 3dxv_A Alpha-amino-epsilon-cap 100.0 7.9E-30 2.7E-34 256.9 24.0 342 64-437 4-425 (439)
13 4atq_A 4-aminobutyrate transam 100.0 9.3E-29 3.2E-33 248.4 29.8 341 66-436 27-454 (456)
14 3i5t_A Aminotransferase; pyrid 100.0 9.8E-29 3.3E-33 251.3 29.6 323 92-440 36-457 (476)
15 4e3q_A Pyruvate transaminase; 100.0 3.9E-28 1.3E-32 244.8 29.9 324 91-440 48-471 (473)
16 3gju_A Putative aminotransfera 100.0 1.7E-28 5.7E-33 248.8 27.3 326 93-440 34-459 (460)
17 3nra_A Aspartate aminotransfer 100.0 7E-29 2.4E-33 247.0 22.6 328 94-437 20-405 (407)
18 3tfu_A Adenosylmethionine-8-am 100.0 5.9E-28 2E-32 244.4 29.6 339 63-437 27-453 (457)
19 4ffc_A 4-aminobutyrate aminotr 100.0 8.7E-28 3E-32 243.0 28.6 323 92-439 46-451 (453)
20 2pb2_A Acetylornithine/succiny 100.0 4.8E-28 1.7E-32 242.5 24.9 316 92-438 39-419 (420)
21 4a6r_A Omega transaminase; tra 100.0 1.2E-27 4.2E-32 242.4 27.7 324 92-439 32-451 (459)
22 3nx3_A Acoat, acetylornithine 100.0 1E-27 3.4E-32 238.1 26.3 310 92-436 18-394 (395)
23 3dod_A Adenosylmethionine-8-am 100.0 9.3E-28 3.2E-32 242.5 25.0 323 92-440 26-446 (448)
24 2epj_A Glutamate-1-semialdehyd 100.0 1.3E-27 4.6E-32 240.3 25.8 318 92-438 38-432 (434)
25 3oks_A 4-aminobutyrate transam 100.0 5.2E-27 1.8E-31 237.2 29.6 321 92-435 43-449 (451)
26 3i4j_A Aminotransferase, class 100.0 6.5E-27 2.2E-31 234.9 28.2 328 92-438 11-429 (430)
27 3l44_A Glutamate-1-semialdehyd 100.0 6.6E-27 2.3E-31 235.2 28.3 324 91-440 36-433 (434)
28 2e7u_A Glutamate-1-semialdehyd 100.0 5.6E-27 1.9E-31 235.0 25.6 317 92-433 34-423 (424)
29 3n5m_A Adenosylmethionine-8-am 100.0 8.7E-27 3E-31 235.6 27.2 326 92-435 31-450 (452)
30 3k28_A Glutamate-1-semialdehyd 100.0 7.5E-27 2.5E-31 234.5 25.1 319 91-437 34-427 (429)
31 1sff_A 4-aminobutyrate aminotr 100.0 1.9E-26 6.4E-31 231.0 27.0 320 93-437 24-424 (426)
32 3fq8_A Glutamate-1-semialdehyd 100.0 2.3E-26 7.9E-31 230.7 26.1 319 92-436 34-426 (427)
33 3ruy_A Ornithine aminotransfer 99.9 9.8E-27 3.3E-31 230.6 23.0 309 92-434 18-391 (392)
34 4e77_A Glutamate-1-semialdehyd 99.9 3E-26 1E-30 230.1 26.8 318 92-435 35-427 (429)
35 4adb_A Succinylornithine trans 99.9 6.4E-26 2.2E-30 225.6 26.6 318 92-439 21-402 (406)
36 3dzz_A Putative pyridoxal 5'-p 99.9 6E-26 2E-30 224.5 26.1 325 94-437 11-389 (391)
37 3a8u_X Omega-amino acid--pyruv 99.9 4.7E-26 1.6E-30 230.0 25.0 319 92-437 32-447 (449)
38 2yky_A Beta-transaminase; tran 99.9 2.1E-29 7.2E-34 253.7 0.0 316 92-437 82-460 (465)
39 3fdb_A Beta C-S lyase, putativ 99.9 3.5E-26 1.2E-30 225.1 22.0 319 97-436 10-375 (377)
40 2ord_A Acoat, acetylornithine 99.9 5E-26 1.7E-30 226.0 22.9 310 92-436 22-396 (397)
41 1zod_A DGD, 2,2-dialkylglycine 99.9 1.6E-25 5.4E-30 225.0 25.2 324 92-437 25-432 (433)
42 3kax_A Aminotransferase, class 99.9 5.5E-25 1.9E-29 216.9 27.5 322 94-434 7-382 (383)
43 1ohv_A 4-aminobutyrate aminotr 99.9 1.5E-26 5.1E-31 235.0 16.3 315 93-436 46-470 (472)
44 2cy8_A D-phgat, D-phenylglycin 99.9 9.6E-25 3.3E-29 220.7 29.3 318 92-438 39-436 (453)
45 3l8a_A METC, putative aminotra 99.9 6.1E-25 2.1E-29 220.0 26.9 324 93-435 42-420 (421)
46 4a0g_A Adenosylmethionine-8-am 99.9 4.7E-27 1.6E-31 251.8 11.3 322 92-437 356-828 (831)
47 3ly1_A Putative histidinol-pho 99.9 1.3E-24 4.6E-29 212.0 27.3 299 100-436 6-351 (354)
48 2eo5_A 419AA long hypothetical 99.9 1.9E-24 6.4E-29 216.4 26.9 305 92-437 24-418 (419)
49 2zc0_A Alanine glyoxylate tran 99.9 5.4E-24 1.9E-28 211.8 29.5 313 108-439 33-406 (407)
50 4dq6_A Putative pyridoxal phos 99.9 7.1E-25 2.4E-29 216.8 22.5 320 95-434 12-390 (391)
51 2cjg_A L-lysine-epsilon aminot 99.9 1E-24 3.6E-29 220.2 23.8 332 63-437 14-448 (449)
52 1vef_A Acetylornithine/acetyl- 99.9 7.8E-25 2.7E-29 217.1 22.2 307 92-434 27-394 (395)
53 1s0a_A Adenosylmethionine-8-am 99.9 9.5E-24 3.2E-28 211.8 29.8 310 93-436 25-423 (429)
54 1j32_A Aspartate aminotransfer 99.9 2.5E-24 8.4E-29 212.9 24.6 311 107-437 28-387 (388)
55 3aow_A Putative uncharacterize 99.9 3.1E-24 1.1E-28 216.6 25.3 314 108-439 75-447 (448)
56 1c7n_A Cystalysin; transferase 99.9 2.7E-24 9.2E-29 213.4 23.8 323 95-440 9-396 (399)
57 2dou_A Probable N-succinyldiam 99.9 7E-24 2.4E-28 208.8 26.0 301 107-434 23-375 (376)
58 2z61_A Probable aspartate amin 99.9 2.3E-24 8E-29 211.8 22.5 299 107-435 27-369 (370)
59 3h14_A Aminotransferase, class 99.9 8.4E-24 2.9E-28 209.4 26.1 301 107-437 29-382 (391)
60 3dyd_A Tyrosine aminotransfera 99.9 8.7E-24 3E-28 212.0 25.7 313 107-438 52-425 (427)
61 3ffh_A Histidinol-phosphate am 99.9 2.4E-23 8.3E-28 203.9 27.9 290 108-433 31-362 (363)
62 2gb3_A Aspartate aminotransfer 99.9 6.5E-24 2.2E-28 211.7 22.9 307 107-441 41-406 (409)
63 1o4s_A Aspartate aminotransfer 99.9 8.8E-24 3E-28 209.3 23.6 296 107-434 39-386 (389)
64 2x5d_A Probable aminotransfera 99.9 2.1E-23 7.2E-28 208.1 26.4 308 107-437 35-398 (412)
65 1t3i_A Probable cysteine desul 99.9 3.2E-23 1.1E-27 206.7 27.0 319 106-437 24-413 (420)
66 1d2f_A MALY protein; aminotran 99.9 7.9E-23 2.7E-27 202.3 29.3 317 97-437 10-389 (390)
67 3ei9_A LL-diaminopimelate amin 99.9 8.1E-24 2.8E-28 212.4 22.1 304 107-433 54-424 (432)
68 1gd9_A Aspartate aminotransfer 99.9 3.7E-23 1.2E-27 204.6 26.4 302 110-436 27-385 (389)
69 3qgu_A LL-diaminopimelate amin 99.9 6.8E-24 2.3E-28 214.1 20.8 309 106-436 66-439 (449)
70 1vp4_A Aminotransferase, putat 99.9 2.8E-23 9.5E-28 208.2 24.9 315 108-441 42-422 (425)
71 2zyj_A Alpha-aminodipate amino 99.9 1.9E-23 6.3E-28 207.4 23.2 313 108-439 31-395 (397)
72 1kmj_A Selenocysteine lyase; p 99.9 6.6E-23 2.3E-27 203.4 26.8 319 106-437 19-405 (406)
73 1v2d_A Glutamine aminotransfer 99.9 3E-23 1E-27 204.7 23.5 297 110-438 26-372 (381)
74 3get_A Histidinol-phosphate am 99.9 6.1E-23 2.1E-27 201.2 25.6 290 108-434 29-364 (365)
75 3fvs_A Kynurenine--oxoglutarat 99.9 5E-23 1.7E-27 205.8 25.3 322 108-436 27-421 (422)
76 3jtx_A Aminotransferase; NP_28 99.9 1E-22 3.6E-27 201.7 27.3 313 101-434 21-395 (396)
77 1xi9_A Putative transaminase; 99.9 7E-23 2.4E-27 203.9 25.9 307 107-438 36-404 (406)
78 2eh6_A Acoat, acetylornithine 99.9 1.6E-23 5.6E-28 205.9 21.0 302 93-433 11-374 (375)
79 3g0t_A Putative aminotransfera 99.9 2.9E-23 1E-27 208.5 23.1 304 107-435 42-435 (437)
80 3lws_A Aromatic amino acid bet 99.9 5.8E-24 2E-28 207.8 17.0 308 109-434 3-356 (357)
81 1yiz_A Kynurenine aminotransfe 99.9 5.9E-23 2E-27 205.9 24.7 320 109-434 37-426 (429)
82 3ezs_A Aminotransferase ASPB; 99.9 4.6E-23 1.6E-27 202.8 22.9 302 107-435 22-373 (376)
83 2o1b_A Aminotransferase, class 99.9 3.5E-23 1.2E-27 206.1 22.2 305 107-435 45-401 (404)
84 3euc_A Histidinol-phosphate am 99.9 4E-22 1.4E-26 195.5 28.4 293 108-434 29-365 (367)
85 3fkd_A L-threonine-O-3-phospha 99.9 3.6E-22 1.2E-26 194.6 27.5 302 98-435 3-340 (350)
86 3hdo_A Histidinol-phosphate am 99.9 1.9E-22 6.5E-27 197.4 25.6 297 107-435 24-353 (360)
87 3piu_A 1-aminocyclopropane-1-c 99.9 9.7E-23 3.3E-27 204.8 23.9 278 150-438 82-433 (435)
88 1u08_A Hypothetical aminotrans 99.9 2.4E-22 8.1E-27 198.6 26.2 307 110-432 31-385 (386)
89 1bw0_A TAT, protein (tyrosine 99.9 7.7E-23 2.7E-27 204.1 22.5 313 109-437 33-413 (416)
90 3e2y_A Kynurenine-oxoglutarate 99.9 1.7E-22 5.7E-27 201.1 22.7 313 108-432 22-408 (410)
91 3b46_A Aminotransferase BNA3; 99.9 5.5E-23 1.9E-27 207.4 19.2 317 107-432 55-442 (447)
92 3cq5_A Histidinol-phosphate am 99.9 2.5E-21 8.4E-26 190.2 30.1 284 112-434 33-365 (369)
93 2o0r_A RV0858C (N-succinyldiam 99.9 3.5E-22 1.2E-26 199.1 24.4 309 110-437 26-396 (411)
94 4hvk_A Probable cysteine desul 99.9 6.8E-22 2.3E-26 194.2 25.3 303 124-439 12-375 (382)
95 1b5p_A Protein (aspartate amin 99.9 6.6E-22 2.3E-26 195.5 25.0 305 108-435 30-383 (385)
96 3ele_A Amino transferase; RER0 99.9 3.7E-22 1.3E-26 197.9 23.3 304 108-437 34-396 (398)
97 3op7_A Aminotransferase class 99.9 2.7E-22 9.1E-27 197.3 21.2 303 108-438 26-372 (375)
98 1lc5_A COBD, L-threonine-O-3-p 99.9 1.2E-21 4.1E-26 192.0 25.6 296 106-437 21-360 (364)
99 1eg5_A Aminotransferase; PLP-d 99.9 2.1E-21 7.3E-26 191.0 26.2 313 111-438 4-377 (384)
100 3ftb_A Histidinol-phosphate am 99.9 4.5E-21 1.5E-25 187.4 28.2 290 106-435 23-359 (361)
101 2a7v_A Serine hydroxymethyltra 99.9 1.3E-22 4.5E-27 205.3 17.8 306 110-436 55-440 (490)
102 3b1d_A Betac-S lyase; HET: PLP 99.8 5.1E-25 1.7E-29 218.4 0.0 318 95-435 14-391 (392)
103 3p1t_A Putative histidinol-pho 99.9 5.8E-21 2E-25 184.8 27.6 289 107-434 14-334 (337)
104 2dr1_A PH1308 protein, 386AA l 99.9 6.5E-21 2.2E-25 187.8 28.2 290 124-438 31-380 (386)
105 3tcm_A Alanine aminotransferas 99.9 7.1E-21 2.4E-25 194.6 28.6 309 125-440 108-497 (500)
106 3cai_A Possible aminotransfera 99.9 2.2E-21 7.7E-26 192.7 23.5 308 109-432 27-404 (406)
107 2vi8_A Serine hydroxymethyltra 99.9 1.1E-21 3.7E-26 194.9 20.5 308 109-437 24-387 (405)
108 3lvm_A Cysteine desulfurase; s 99.9 2.1E-21 7.1E-26 194.0 22.6 312 110-438 24-400 (423)
109 2e7j_A SEP-tRNA:Cys-tRNA synth 99.9 2.1E-22 7.2E-27 197.5 15.0 296 124-436 21-369 (371)
110 4eb5_A Probable cysteine desul 99.9 6E-21 2.1E-25 187.8 23.6 314 111-439 3-375 (382)
111 3t18_A Aminotransferase class 99.9 3.2E-21 1.1E-25 192.3 20.9 301 108-438 36-411 (413)
112 3f9t_A TDC, L-tyrosine decarbo 99.9 6.3E-21 2.2E-25 188.2 22.9 285 124-435 42-396 (397)
113 1m32_A 2-aminoethylphosphonate 99.9 5.5E-21 1.9E-25 186.7 22.2 300 110-435 4-363 (366)
114 2r2n_A Kynurenine/alpha-aminoa 99.9 4.3E-20 1.5E-24 185.0 28.4 275 150-437 78-424 (425)
115 3rq1_A Aminotransferase class 99.9 1.1E-20 3.6E-25 188.8 23.7 303 108-437 37-415 (418)
116 1v72_A Aldolase; PLP-dependent 99.9 3.2E-21 1.1E-25 187.9 19.3 295 109-437 7-353 (356)
117 1vjo_A Alanine--glyoxylate ami 99.9 2.7E-20 9.4E-25 184.0 26.1 299 109-434 34-392 (393)
118 3h7f_A Serine hydroxymethyltra 99.9 4.4E-21 1.5E-25 193.5 20.4 308 110-436 46-413 (447)
119 2dkj_A Serine hydroxymethyltra 99.9 3.8E-21 1.3E-25 191.1 19.5 312 109-436 23-387 (407)
120 3gbx_A Serine hydroxymethyltra 99.9 3.4E-21 1.2E-25 192.1 19.1 310 113-436 35-395 (420)
121 3ecd_A Serine hydroxymethyltra 99.9 2E-20 6.7E-25 186.9 24.1 314 110-437 33-397 (425)
122 3asa_A LL-diaminopimelate amin 99.9 1.5E-20 5.2E-25 186.7 22.4 305 108-437 32-393 (400)
123 2x5f_A Aspartate_tyrosine_phen 99.9 3.2E-21 1.1E-25 193.3 17.3 303 109-437 47-429 (430)
124 1jg8_A L-ALLO-threonine aldola 99.9 1.4E-20 4.6E-25 183.1 20.7 296 109-436 3-345 (347)
125 3ihj_A Alanine aminotransferas 99.9 7.4E-20 2.5E-24 186.9 26.1 309 125-440 103-496 (498)
126 1iay_A ACC synthase 2, 1-amino 99.9 7.4E-20 2.5E-24 183.3 25.2 302 110-436 37-426 (428)
127 1elu_A L-cysteine/L-cystine C- 99.9 3.1E-20 1.1E-24 183.1 22.1 292 124-433 28-388 (390)
128 1fg7_A Histidinol phosphate am 99.9 9.3E-20 3.2E-24 178.2 24.7 283 109-433 29-354 (356)
129 3nnk_A Ureidoglycine-glyoxylat 99.9 1.4E-19 4.7E-24 179.9 25.9 291 124-437 24-390 (411)
130 3n0l_A Serine hydroxymethyltra 99.9 5.2E-20 1.8E-24 183.4 22.2 312 110-436 26-388 (417)
131 2huf_A Alanine glyoxylate amin 99.8 2.1E-19 7E-24 177.6 26.2 293 123-438 29-384 (393)
132 4eu1_A Mitochondrial aspartate 99.8 7.8E-21 2.7E-25 189.3 15.6 287 109-434 41-408 (409)
133 3isl_A Purine catabolism prote 99.8 2E-19 6.8E-24 179.0 25.1 270 153-437 43-390 (416)
134 2z9v_A Aspartate aminotransfer 99.8 3.2E-19 1.1E-23 176.2 26.2 291 124-437 20-371 (392)
135 2rfv_A Methionine gamma-lyase; 99.8 6.3E-20 2.1E-24 182.2 21.2 267 152-433 62-396 (398)
136 3zrp_A Serine-pyruvate aminotr 99.8 4.6E-19 1.6E-23 174.3 27.1 288 124-438 13-364 (384)
137 1b9h_A AHBA synthase, protein 99.8 4.2E-19 1.5E-23 175.3 26.3 294 125-436 16-387 (388)
138 2c81_A Glutamine-2-deoxy-scyll 99.8 2.5E-19 8.5E-24 178.9 24.9 298 125-437 15-414 (418)
139 3kgw_A Alanine-glyoxylate amin 99.8 2.1E-19 7.2E-24 177.3 23.8 294 124-440 34-391 (393)
140 1mdo_A ARNB aminotransferase; 99.8 4E-19 1.4E-23 175.6 25.6 302 110-437 9-386 (393)
141 2oga_A Transaminase; PLP-depen 99.8 1.5E-19 5.2E-24 179.4 22.4 296 109-437 30-396 (399)
142 2q7w_A Aspartate aminotransfer 99.8 1.4E-20 4.8E-25 186.3 14.7 291 107-433 24-395 (396)
143 1iug_A Putative aspartate amin 99.8 4.4E-19 1.5E-23 172.4 25.1 289 124-439 12-350 (352)
144 1qz9_A Kynureninase; kynurenin 99.8 1.6E-19 5.5E-24 179.9 22.4 302 108-437 28-402 (416)
145 2c0r_A PSAT, phosphoserine ami 99.8 2.5E-19 8.7E-24 175.2 22.9 287 124-436 15-360 (362)
146 2ay1_A Aroat, aromatic amino a 99.8 1.2E-20 4E-25 186.9 13.5 291 108-433 25-392 (394)
147 1w23_A Phosphoserine aminotran 99.8 1.5E-19 5.3E-24 176.4 21.0 305 110-436 3-359 (360)
148 1ajs_A Aspartate aminotransfer 99.8 5.8E-20 2E-24 183.0 17.8 295 107-436 28-410 (412)
149 1svv_A Threonine aldolase; str 99.8 1.1E-19 3.8E-24 177.1 19.4 293 110-437 14-358 (359)
150 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.8 8.1E-19 2.8E-23 176.3 25.8 298 106-435 28-434 (437)
151 3vax_A Putative uncharacterize 99.8 5.5E-20 1.9E-24 182.2 16.5 312 107-436 19-399 (400)
152 4f4e_A Aromatic-amino-acid ami 99.8 1.5E-19 5E-24 180.7 19.2 294 109-434 49-419 (420)
153 3frk_A QDTB; aminotransferase, 99.8 2.7E-19 9.2E-24 175.8 20.7 284 126-436 17-367 (373)
154 3f6t_A Aspartate aminotransfer 99.8 9.6E-20 3.3E-24 187.5 17.8 315 110-439 104-527 (533)
155 1ax4_A Tryptophanase; tryptoph 99.8 1.6E-18 5.5E-23 175.5 26.2 317 107-437 41-441 (467)
156 1yaa_A Aspartate aminotransfer 99.8 5.9E-20 2E-24 183.0 15.3 293 108-436 28-410 (412)
157 1e5e_A MGL, methionine gamma-l 99.8 2.8E-18 9.6E-23 170.6 27.4 267 153-440 61-398 (404)
158 1uu1_A Histidinol-phosphate am 99.8 8.4E-19 2.9E-23 169.8 22.6 274 109-433 19-334 (335)
159 3uwc_A Nucleotide-sugar aminot 99.8 8.6E-19 2.9E-23 172.1 22.4 283 128-436 21-370 (374)
160 3fsl_A Aromatic-amino-acid ami 99.8 2.3E-19 8E-24 177.6 18.4 289 109-433 26-396 (397)
161 3ez1_A Aminotransferase MOCR f 99.8 2.3E-19 7.8E-24 179.4 17.8 312 110-439 26-417 (423)
162 3ppl_A Aspartate aminotransfer 99.8 1.2E-19 4E-24 181.8 15.7 312 110-438 34-421 (427)
163 2po3_A 4-dehydrase; external a 99.8 2.9E-18 1E-22 171.5 25.8 301 113-437 20-386 (424)
164 3meb_A Aspartate aminotransfer 99.8 2.3E-19 7.9E-24 180.9 17.5 296 107-436 46-443 (448)
165 2hox_A ALLIIN lyase 1; cystein 99.8 1.2E-19 4E-24 181.9 15.2 306 107-434 54-422 (427)
166 2fnu_A Aminotransferase; prote 99.8 1.8E-18 6.3E-23 169.6 23.4 292 124-437 11-372 (375)
167 3if2_A Aminotransferase; YP_26 99.8 6.6E-19 2.2E-23 177.2 20.4 316 109-440 31-443 (444)
168 1rv3_A Serine hydroxymethyltra 99.8 1.8E-19 6.1E-24 183.4 16.3 307 110-436 45-430 (483)
169 7aat_A Aspartate aminotransfer 99.8 3E-19 1E-23 177.1 17.1 289 110-434 29-400 (401)
170 1gc0_A Methionine gamma-lyase; 99.8 2E-18 6.7E-23 171.4 22.8 265 152-433 63-397 (398)
171 3d6k_A Putative aminotransfera 99.8 6.2E-19 2.1E-23 176.4 19.0 310 111-439 34-420 (422)
172 3e9k_A Kynureninase; kynurenin 99.8 9.7E-19 3.3E-23 177.2 20.5 307 108-437 65-461 (465)
173 3f0h_A Aminotransferase; RER07 99.8 5.7E-18 1.9E-22 166.2 24.4 290 124-436 30-373 (376)
174 3mc6_A Sphingosine-1-phosphate 99.8 3.4E-18 1.2E-22 174.6 23.2 307 115-440 65-440 (497)
175 1qgn_A Protein (cystathionine 99.8 1.1E-17 3.7E-22 167.8 26.0 266 152-436 112-444 (445)
176 3nyt_A Aminotransferase WBPE; 99.8 8.6E-18 3E-22 164.8 24.4 280 126-433 16-360 (367)
177 2ch1_A 3-hydroxykynurenine tra 99.8 1.9E-17 6.6E-22 163.6 26.7 292 125-438 30-384 (396)
178 3g7q_A Valine-pyruvate aminotr 99.8 5.8E-18 2E-22 168.6 23.0 311 109-439 31-415 (417)
179 2yrr_A Aminotransferase, class 99.8 2.8E-18 9.6E-23 166.5 20.1 287 124-435 11-351 (353)
180 3b8x_A WBDK, pyridoxamine 5-ph 99.8 2.8E-17 9.4E-22 162.5 26.8 284 125-430 14-389 (390)
181 3mad_A Sphingosine-1-phosphate 99.8 6.6E-18 2.3E-22 173.3 22.8 311 111-440 93-472 (514)
182 1pff_A Methionine gamma-lyase; 99.8 4.3E-18 1.5E-22 164.3 19.8 258 158-433 2-330 (331)
183 2ez2_A Beta-tyrosinase, tyrosi 99.8 5.5E-17 1.9E-21 163.7 28.6 311 107-437 40-431 (456)
184 3bwn_A AT1G70560, L-tryptophan 99.8 2.5E-19 8.7E-24 177.4 10.8 257 156-436 70-386 (391)
185 3ke3_A Putative serine-pyruvat 99.8 1.2E-17 4.1E-22 164.6 22.6 272 153-438 34-377 (379)
186 3dr4_A Putative perosamine syn 99.8 1.2E-17 4E-22 165.1 22.6 290 125-434 35-390 (391)
187 3pj0_A LMO0305 protein; struct 99.8 2.4E-18 8.3E-23 167.9 17.3 283 125-433 28-358 (359)
188 3qhx_A Cystathionine gamma-syn 99.8 2.8E-17 9.5E-22 162.8 25.0 264 152-430 64-391 (392)
189 3ffr_A Phosphoserine aminotran 99.8 4.8E-17 1.6E-21 158.5 26.1 286 124-434 15-361 (362)
190 1cs1_A CGS, protein (cystathio 99.8 4.7E-17 1.6E-21 160.7 26.1 263 153-433 51-383 (386)
191 2bkw_A Alanine-glyoxylate amin 99.8 1.6E-17 5.3E-22 163.4 22.3 264 154-435 38-382 (385)
192 3hbx_A GAD 1, glutamate decarb 99.8 1.9E-17 6.5E-22 169.2 22.5 319 107-439 53-446 (502)
193 2oqx_A Tryptophanase; lyase, p 99.8 1.4E-17 4.7E-22 168.6 21.3 313 107-437 39-442 (467)
194 1o69_A Aminotransferase; struc 99.8 8.2E-17 2.8E-21 159.4 25.6 296 125-435 11-385 (394)
195 3ndn_A O-succinylhomoserine su 99.8 7.7E-17 2.6E-21 160.6 25.3 270 152-434 79-413 (414)
196 3ri6_A O-acetylhomoserine sulf 99.8 3.9E-17 1.3E-21 163.3 22.9 266 152-434 80-429 (430)
197 3ju7_A Putative PLP-dependent 99.8 1.8E-16 6.3E-21 156.0 27.1 295 121-436 11-374 (377)
198 2fq6_A Cystathionine beta-lyas 99.8 3.3E-17 1.1E-21 163.2 21.1 268 152-432 80-413 (415)
199 2cb1_A O-acetyl homoserine sul 99.8 1.4E-16 4.9E-21 158.7 25.1 262 152-432 54-411 (412)
200 3n75_A LDC, lysine decarboxyla 99.8 6.7E-17 2.3E-21 169.4 22.9 272 152-436 193-559 (715)
201 2aeu_A Hypothetical protein MJ 99.8 3.1E-17 1E-21 161.4 19.1 300 108-439 26-373 (374)
202 1n8p_A Cystathionine gamma-lya 99.7 8.6E-17 2.9E-21 159.3 21.1 266 153-433 54-391 (393)
203 3ou5_A Serine hydroxymethyltra 99.7 1.1E-16 3.9E-21 155.8 20.7 306 110-435 55-439 (490)
204 4e1o_A HDC, histidine decarbox 99.7 8.1E-16 2.8E-20 156.3 27.9 271 151-439 115-480 (481)
205 2qma_A Diaminobutyrate-pyruvat 99.7 2.4E-16 8.3E-21 160.9 23.6 307 112-436 96-495 (497)
206 3a9z_A Selenocysteine lyase; P 99.7 1.5E-16 5.1E-21 159.3 21.5 316 107-437 17-428 (432)
207 3k40_A Aromatic-L-amino-acid d 99.7 5.6E-16 1.9E-20 157.2 25.6 270 154-440 113-474 (475)
208 3acz_A Methionine gamma-lyase; 99.7 7.7E-16 2.6E-20 152.2 25.3 258 153-430 58-386 (389)
209 1c4k_A Protein (ornithine deca 99.7 5.5E-17 1.9E-21 171.3 17.8 276 150-437 169-566 (730)
210 1wyu_B Glycine dehydrogenase s 99.7 2.3E-16 7.7E-21 160.2 20.3 296 125-435 79-439 (474)
211 3cog_A Cystathionine gamma-lya 99.7 7E-16 2.4E-20 153.2 22.8 263 154-434 67-399 (403)
212 2dgk_A GAD-beta, GADB, glutama 99.7 1.2E-15 4.1E-20 153.9 23.8 304 124-439 54-436 (452)
213 3e77_A Phosphoserine aminotran 99.7 1E-15 3.6E-20 149.7 21.0 311 112-436 11-374 (377)
214 3vp6_A Glutamate decarboxylase 99.7 7.2E-15 2.5E-19 150.3 27.9 299 128-436 112-504 (511)
215 3m5u_A Phosphoserine aminotran 99.7 4.6E-15 1.6E-19 144.5 25.1 291 124-436 16-359 (361)
216 3nmy_A Xometc, cystathionine g 99.7 2.8E-15 9.7E-20 148.6 23.4 208 152-365 65-321 (400)
217 2ctz_A O-acetyl-L-homoserine s 99.7 2.7E-15 9.2E-20 149.9 22.1 265 152-434 56-420 (421)
218 3k7y_A Aspartate aminotransfer 99.7 9.7E-16 3.3E-20 152.0 18.6 288 109-435 29-403 (405)
219 3jzl_A Putative cystathionine 99.7 8.5E-16 2.9E-20 152.4 17.6 246 125-389 31-338 (409)
220 1ibj_A CBL, cystathionine beta 99.7 2.2E-15 7.6E-20 152.1 20.3 266 153-436 132-461 (464)
221 3hvy_A Cystathionine beta-lyas 99.7 3E-15 1E-19 149.0 20.9 244 126-388 47-354 (427)
222 2fyf_A PSAT, phosphoserine ami 99.7 5E-15 1.7E-19 146.6 20.4 284 124-436 51-397 (398)
223 2vyc_A Biodegradative arginine 99.7 4E-15 1.4E-19 158.4 20.5 276 151-437 202-605 (755)
224 3i16_A Aluminum resistance pro 99.6 4.3E-15 1.5E-19 147.9 19.2 246 126-389 46-355 (427)
225 2zy4_A L-aspartate beta-decarb 99.6 8.4E-15 2.9E-19 150.8 20.1 314 111-439 106-524 (546)
226 1js3_A DDC;, DOPA decarboxylas 99.6 1.2E-13 4.2E-18 140.4 27.3 270 152-439 111-476 (486)
227 2okj_A Glutamate decarboxylase 99.6 1.5E-13 5.2E-18 140.4 26.4 277 152-437 130-502 (504)
228 3qm2_A Phosphoserine aminotran 99.6 7.5E-15 2.6E-19 144.3 15.0 292 125-436 39-384 (386)
229 2jis_A Cysteine sulfinic acid 99.6 3.8E-13 1.3E-17 137.8 27.7 278 150-435 144-513 (515)
230 1wyu_A Glycine dehydrogenase ( 99.6 3.7E-14 1.3E-18 142.3 18.8 286 125-434 78-437 (438)
231 3ht4_A Aluminum resistance pro 99.6 2E-14 6.8E-19 143.7 16.3 249 125-389 37-344 (431)
232 2x3l_A ORN/Lys/Arg decarboxyla 99.6 2.4E-14 8.1E-19 144.1 16.3 258 152-436 55-352 (446)
233 4h51_A Aspartate aminotransfer 99.6 5.3E-14 1.8E-18 139.8 16.8 294 109-439 44-419 (420)
234 2z67_A O-phosphoseryl-tRNA(SEC 99.5 5.3E-13 1.8E-17 134.6 20.7 263 152-434 131-455 (456)
235 3hl2_A O-phosphoseryl-tRNA(SEC 99.0 1.1E-07 3.8E-12 93.3 23.1 266 167-440 129-464 (501)
236 3bc8_A O-phosphoseryl-tRNA(SEC 99.0 1.2E-07 4.2E-12 93.8 23.2 281 153-440 97-446 (450)
237 2gjh_A Designed protein; oblig 50.7 29 0.00099 22.0 4.3 28 409-437 3-30 (62)
238 3ry0_A Putative tautomerase; o 34.4 78 0.0027 21.0 5.2 30 410-439 3-32 (65)
239 2x4k_A 4-oxalocrotonate tautom 34.1 76 0.0026 20.5 5.1 33 408-440 4-36 (63)
240 3m21_A Probable tautomerase HP 29.3 93 0.0032 20.8 4.8 30 410-439 3-35 (67)
241 1otf_A 4-oxalocrotonate tautom 28.0 1.2E+02 0.0039 19.6 5.1 30 410-439 3-32 (62)
242 2opa_A Probable tautomerase YW 26.9 1.3E+02 0.0044 19.3 5.2 30 410-439 3-32 (61)
243 3mb2_A 4-oxalocrotonate tautom 26.6 1.1E+02 0.0037 20.8 4.9 31 410-440 4-34 (72)
244 1qys_A TOP7; alpha-beta, novel 26.3 94 0.0032 21.8 4.2 29 408-437 46-74 (106)
245 2ks1_B Epidermal growth factor 26.3 70 0.0024 20.0 3.2 13 46-58 28-40 (44)
246 2l2t_A Receptor tyrosine-prote 24.9 76 0.0026 19.8 3.2 12 47-58 28-39 (44)
247 3m20_A 4-oxalocrotonate tautom 23.4 1.6E+02 0.0053 19.3 5.0 30 410-440 3-32 (62)
248 3twe_A Alpha4H; unknown functi 22.3 74 0.0025 16.7 2.3 15 326-340 11-25 (27)
249 3fwt_A Macrophage migration in 21.4 1.2E+02 0.0041 23.8 4.7 34 408-441 22-55 (133)
250 3t5s_A Gilaa.00834.A, macropha 21.0 1.4E+02 0.0048 23.5 5.0 34 408-441 23-56 (135)
251 1gyx_A YDCE, B1461, hypothetic 20.4 1.8E+02 0.0063 19.9 5.1 30 410-439 3-33 (76)
No 1
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=1.8e-40 Score=333.74 Aligned_cols=334 Identities=27% Similarity=0.467 Sum_probs=285.2
Q ss_pred CCeee-cCCCCeEEECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCc
Q 013461 93 PPVLE-SAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD 171 (442)
Q Consensus 93 ~~~~~-~~~g~~~~~~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~ 171 (442)
++.++ +++|.++++||+++|||++++|+|+..+|++++++.+++++|+.++++++..+|..+.+.++++.||+++|.++
T Consensus 47 ~~~~~~~~~g~~~~~~g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~ 126 (427)
T 2w8t_A 47 AIVMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTG 126 (427)
T ss_dssp CCCCSEEEETTEEEETTEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCSE
T ss_pred eeeccccCCCceEeeCCceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCCc
Confidence 45777 89999999999999999999999988899999999999999888788888889999999999999999999999
Q ss_pred EEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCCCHHHHHHHHHhhcc-cccc---------
Q 013461 172 SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTA-DNKR--------- 241 (442)
Q Consensus 172 ~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~d~~~Le~~l~~~~~-~~~~--------- 241 (442)
++++++|++|+..++.+++++||.|+++.++|.++..+++..|++++.++++|+++|++.+++..+ ..+.
T Consensus 127 ~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~ 206 (427)
T 2w8t_A 127 AIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSM 206 (427)
T ss_dssp EEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETT
T ss_pred eEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999986422 1111
Q ss_pred -------------------------cccccccccCCCccccccCCCCCceeEEEEeccccccCCCcEEEcCHHhHHHHHh
Q 013461 242 -------------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRL 296 (442)
Q Consensus 242 -------------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~GG~v~g~~~~i~~l~~ 296 (442)
+|+.|+++++|.++.+++++. +++|++++||||++|+.|||+++++++++.++.
T Consensus 207 tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~-~~~di~~~s~sK~~g~~gG~v~~~~~l~~~l~~ 285 (427)
T 2w8t_A 207 LGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRL 285 (427)
T ss_dssp TTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSSTTCSCCEEEEECCTTGGGGGG
T ss_pred CCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCC-cCCcEEEecchhhhccCCCEEEeCHHHHHHHHH
Confidence 677777777788888888885 478999999999999999999999999998876
Q ss_pred hCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCC-CCCEEEEEecCCCCCchhhH
Q 013461 297 SSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP-ESPIVFLILEKSTGSMKNDL 375 (442)
Q Consensus 297 ~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~-~~~i~~~~~~~~~~~~~~~~ 375 (442)
....+.++++.+|..++++.++++.+++.++++++++++++++.+.|+++ |+++..++ .++++++.++. .
T Consensus 286 ~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--------~ 356 (427)
T 2w8t_A 286 ACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLED--------Q 356 (427)
T ss_dssp TCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEESS--------H
T ss_pred hcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEECC--------H
Confidence 65567777888999988888999988766779999999999999999987 88876444 67899888742 1
Q ss_pred HHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhh
Q 013461 376 QLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 376 ~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
....++++.+++ +||++.++.++.++.. ...+|++++..+|++|+++++++|+++++++..
T Consensus 357 ~~~~~l~~~L~~-~Gi~v~~~~~~~~~~~--~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 357 EQAAMMWQALLD-GGLYVNMARPPATPAG--TFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp HHHHHHHHHHHH-TTEECEEECTTTSCTT--CEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHH-CCeEEeeeCCCCCCCC--CeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 234567776555 5999999877654321 245999999999999999999999999877643
No 2
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=3.3e-37 Score=306.29 Aligned_cols=332 Identities=30% Similarity=0.555 Sum_probs=279.3
Q ss_pred CCCeeecCCCCeEEECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCc
Q 013461 92 EPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD 171 (442)
Q Consensus 92 ~~~~~~~~~g~~~~~~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~ 171 (442)
.++.+++++|.+++.+|+++|||++++++|+.++|++.+++.+++++++.++++++..+|..+.+.++++.+|+++|.++
T Consensus 26 ~~~~~~~~~g~~v~~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~ 105 (399)
T 3tqx_A 26 SERIITSPQNAEIKVGEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDD 105 (399)
T ss_dssp CCCCBCSCSSSEEEETTEEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSE
T ss_pred ccccccCCCCceEeeCCeeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCCc
Confidence 36788999999999999999999999999987899999999999999988888888889999999999999999999999
Q ss_pred EEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCCCHHHHHHHHHhhcc---cccc-------
Q 013461 172 SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTA---DNKR------- 241 (442)
Q Consensus 172 ~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~d~~~Le~~l~~~~~---~~~~------- 241 (442)
.+++++|++++..++.+++++||.|+++.++|+++..+++..|.+++.++++|+++|++.+++... +.+.
T Consensus 106 ~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~ 185 (399)
T 3tqx_A 106 TILYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVF 185 (399)
T ss_dssp EEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEESEE
T ss_pred EEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCCCCHHHHHHHHHhhhccCCCceEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999987532 1111
Q ss_pred ---------------------------cccccccccCCCccccccCCCCCceeEEEEecccccc-CCCcEEEcCHHhHHH
Q 013461 242 ---------------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSARVVDH 293 (442)
Q Consensus 242 ---------------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg-~~GG~v~g~~~~i~~ 293 (442)
+|+.|.++.++.+..+.+++. ++.|++++||||++| +.|||+++++++++.
T Consensus 186 nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~di~~~s~sK~~~g~~gG~~~~~~~~~~~ 264 (399)
T 3tqx_A 186 SMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVA-DRVDILTGTLGKALGGASGGYTSGHKEIIEW 264 (399)
T ss_dssp TTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCT-TCCSEEEEESSSSSCSSCCEEEEECHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCC-CCCcEEEecchHhcccCceEEEEcCHHHHHH
Confidence 555666666666666666653 456899999999998 889999999999999
Q ss_pred HHhhCCceeccCCCcHHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCch
Q 013461 294 QRLSSSGYVFSASLPPYLASAAITAIDVL-EENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMK 372 (442)
Q Consensus 294 l~~~~~~~~~s~s~~p~~aaaa~aal~~l-~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 372 (442)
+......+.++++.++..++++.++++.+ +..++++++++++++++.+.|+++ |+++. ++.++++++.++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~------ 336 (399)
T 3tqx_A 265 LRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKL-GFQLV-PGNHPIIPVMLGD------ 336 (399)
T ss_dssp HHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSSSEEEEEEEC------
T ss_pred HHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCC------
Confidence 98776666777788899988899999887 445678899999999999999987 88776 4678888888742
Q ss_pred hhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 373 NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 373 ~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
.....++++.+++ +||.+.+..++..+.. +..+|++++..+|++|+++++++|+++++++
T Consensus 337 --~~~~~~~~~~l~~-~gi~v~~~~~~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 337 --AQLATNMADHLLQ-EGIYVVGFSYPVVPMG--KARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp --HHHHHHHHHHHHH-TTEECCEECTTTSCTT--CEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHH-CCCEEeeeCCCCCCCC--CceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence 1234577776555 6999998765432211 2459999998899999999999999988764
No 3
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=100.00 E-value=2.6e-37 Score=308.79 Aligned_cols=323 Identities=23% Similarity=0.267 Sum_probs=271.9
Q ss_pred CCCCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcc
Q 013461 99 AAGPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSY 177 (442)
Q Consensus 99 ~~g~~~~-~~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~s 177 (442)
+.+.+++ .+|+++|||++++|+|+.+||++++++.+++++|+.++.+++.++|+.+.+.++++++++++|.+.++++++
T Consensus 48 ~~~~~~~~~~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~s 127 (409)
T 3kki_A 48 GKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQS 127 (409)
T ss_dssp SSCTTCCCCCCTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEESC
T ss_pred CCeeeeCCCCCCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEecc
Confidence 3444444 379999999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred hHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCCCHHHHHHHHHhhcccccc----------------
Q 013461 178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKR---------------- 241 (442)
Q Consensus 178 G~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~d~~~Le~~l~~~~~~~~~---------------- 241 (442)
|++++..++.+++++||.|+++.++|.++..++...|++++.++++|+++|++.+++.......
T Consensus 128 Gt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~ 207 (409)
T 3kki_A 128 GWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAE 207 (409)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECTTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHH
T ss_pred hHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999864221100
Q ss_pred ----------------cccccccccCCCccccccCCCCCceeEEEEeccccccCCCcEEEcCHHhHHHHHhhCCceeccC
Q 013461 242 ----------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSA 305 (442)
Q Consensus 242 ----------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~GG~v~g~~~~i~~l~~~~~~~~~s~ 305 (442)
+|+.|.+|.+|.+..+.+++. +++||+++||||++|+.|||+++++++++.++.....+.+++
T Consensus 208 l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~-~~~di~~~s~sK~~~~~gg~v~~~~~~~~~~~~~~~~~~~~~ 286 (409)
T 3kki_A 208 LVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLT-REVHFMTASLAKTFAYRAGAIWCNNEVNRCVPFISYPAIFSS 286 (409)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCG-GGCSEEEEESSSTTCSSCEEEEESSSGGGTHHHHCHHHHHSB
T ss_pred HHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCC-CCCCEEEeecchhhCCCceEEEECHHHHHHHHHhCcCccccC
Confidence 666666777777777777764 568999999999999889999999999998887666777887
Q ss_pred CCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHH
Q 013461 306 SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWA 385 (442)
Q Consensus 306 s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~ 385 (442)
+.++..++++.++++.+++.++++++++++++++.+.|+++ |+++. +.++++++.++. .....++++.+
T Consensus 287 ~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~--------~~~~~~~~~~L 355 (409)
T 3kki_A 287 TLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-GLTIR--SESQIIGLETGD--------ERNTEKVRDYL 355 (409)
T ss_dssp CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-TCCCC--CSSSEEEEEEES--------HHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCccC--CCCCEEEEEeCC--------HHHHHHHHHHH
Confidence 88899999999999988877778999999999999999987 77765 478899988843 12344677765
Q ss_pred HHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 386 LKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 386 L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
++ +||.+.+..++..+.. +..+|++++..+|++|+++++++|+++++.
T Consensus 356 ~~-~Gv~v~~~~~~~~~~~--~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 356 ES-NGVFGSVFCRPATSKN--KNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp HH-TTEECEEECTTSSCTT--CEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HH-CCceEeeeCCCCcCCC--CcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 55 5999988765433221 246999999999999999999999998764
No 4
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=2.1e-35 Score=293.92 Aligned_cols=332 Identities=29% Similarity=0.485 Sum_probs=270.0
Q ss_pred CCCeeecCCCCeEEE-CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC
Q 013461 92 EPPVLESAAGPHTII-SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP 170 (442)
Q Consensus 92 ~~~~~~~~~g~~~~~-~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e 170 (442)
.+.++++++|.+++. +|+++|||++++++|+.++|++++++.+++++|+.++++++..+|..+...++++++|+++|.+
T Consensus 27 ~~~~~~~~~g~~~~~~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~ 106 (401)
T 1fc4_A 27 EERIITSAQQADITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGME 106 (401)
T ss_dssp CCCCBCSCSSSEEEBTTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCS
T ss_pred eeeeeccCCCceEEeeCCccEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCC
Confidence 467889999999996 9999999999888887678999999999999988776666666677889999999999999998
Q ss_pred cEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCCCHHHHHHHHHhhcc---cccc------
Q 013461 171 DSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTA---DNKR------ 241 (442)
Q Consensus 171 ~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~d~~~Le~~l~~~~~---~~~~------ 241 (442)
+.+++++|++++..++.+++++||.|+++.++|.++..+++..|.+++.++.+|+++|++.+++..+ +.+.
T Consensus 107 ~~i~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~ 186 (401)
T 1fc4_A 107 DAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGV 186 (401)
T ss_dssp EEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESE
T ss_pred cEEEeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECCCCHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 8899999999999999999999999999999999999999999999999999999999999876321 1111
Q ss_pred ----------------------------cccccccccCCCccccccCCCCCceeEEEEeccccc-cCCCcEEEcCHHhHH
Q 013461 242 ----------------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSARVVD 292 (442)
Q Consensus 242 ----------------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~l-g~~GG~v~g~~~~i~ 292 (442)
+|++|..+++|.+..+++++.+ +.|++++||||++ |..|||+++++++++
T Consensus 187 ~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~gG~~~~~~~~~~ 265 (401)
T 1fc4_A 187 FSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASGGYTAARKEVVE 265 (401)
T ss_dssp ETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSCEEEEECHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCCEEEEcCHHHHH
Confidence 4444444444444444566654 6799999999999 777899999999999
Q ss_pred HHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCch
Q 013461 293 HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMK 372 (442)
Q Consensus 293 ~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 372 (442)
.++....++.++.+.+++.++++.++++.+++.++++++++++++++.+.|+++ |+++. ++.++++++.++.
T Consensus 266 ~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~------ 337 (401)
T 1fc4_A 266 WLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIPVMLGD------ 337 (401)
T ss_dssp HHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEEEEEEC------
T ss_pred HHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCCCEEEEEcCC------
Confidence 888765455566677899999999999988666678999999999999999987 87776 4578888888732
Q ss_pred hhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 373 NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 373 ~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
.....++.+.++ ++||.+.++..+..+.. +..+|++++..+|++|+++++++|+++++++
T Consensus 338 --~~~~~~l~~~l~-~~gi~v~~~~~~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 338 --AVVAQKFARELQ-KEGIYVTGFFYPVVPKG--QARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp --HHHHHHHHHHHH-HTTEECCEECTTSSCTT--CEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred --hHHHHHHHHHHH-HCCcEEeeecCCCCCCC--CceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 122446777654 55999998766543211 2359999998899999999999999988764
No 5
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=6.5e-35 Score=290.14 Aligned_cols=332 Identities=30% Similarity=0.525 Sum_probs=267.0
Q ss_pred CCCeeecCCCCeEEECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCc
Q 013461 92 EPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD 171 (442)
Q Consensus 92 ~~~~~~~~~g~~~~~~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~ 171 (442)
.+.++++++|.+++.+|+++|||++++++++..+|.+++++.+++++++.++++++...|..+.+.++++.+++++|.++
T Consensus 26 ~~~~~~~~~g~~~~~~g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~ 105 (398)
T 3a2b_A 26 YFRPIQSKQDTEVKIDGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEA 105 (398)
T ss_dssp SSCCBCSCSSSEEEETTEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE
T ss_pred ceeeecCCCCceEEECCceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCc
Confidence 46788999999999999999999998878887789999999999988766666666677888999999999999999999
Q ss_pred EEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCCCHHHHHHHHHhhcc-cccc---------
Q 013461 172 SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTA-DNKR--------- 241 (442)
Q Consensus 172 ~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~d~~~Le~~l~~~~~-~~~~--------- 241 (442)
++++++|++++..++.+++++||.|+++.++|+++...++..|++++.++.+|+++|++.+++..+ +.+.
T Consensus 106 v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~np 185 (398)
T 3a2b_A 106 AILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSM 185 (398)
T ss_dssp EEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTT
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999976421 1111
Q ss_pred -------------------------cccccccccCCCccccccCCCCCceeEEEEeccccccCCCcEEEcCHHhHHHHHh
Q 013461 242 -------------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRL 296 (442)
Q Consensus 242 -------------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~GG~v~g~~~~i~~l~~ 296 (442)
+++.+.+++++....+.+++. +.+|++++||||++|+.|||+++++++++.++.
T Consensus 186 tG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~di~~~s~sK~~~~~GG~~~~~~~~~~~l~~ 264 (398)
T 3a2b_A 186 EGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLN-DDVDLIMGTFSKSLASLGGFVAGDADVIDFLKH 264 (398)
T ss_dssp TCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCG-GGCSEEEEESSSTTCSSCEEEEECHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCC-cCCeEEEecccccccCCCcEEEeCHHHHHHHHH
Confidence 444444444444444444542 346899999999999878999999999998876
Q ss_pred hCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHH
Q 013461 297 SSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQ 376 (442)
Q Consensus 297 ~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 376 (442)
....+.++++.++.+++++.++++.++...+++++++++++++.+.|+++ |+++.. +.++++++.++. ..
T Consensus 265 ~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~g~~~~~~~~~--------~~ 334 (398)
T 3a2b_A 265 NARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH-GFDLGA-TESPILPIFIRS--------NE 334 (398)
T ss_dssp HCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT-TCCBCS-CCSSEEEEECCC--------HH
T ss_pred hcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc-CCCcCC-CCCCEEEEEcCC--------HH
Confidence 54345555666788777777888877666678999999999999999987 887764 457888888732 12
Q ss_pred HHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 377 LLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 377 ~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
...++.+.++++ ||.+.++..+..+.. +..+|++++..+|++|+++++++|+++++++
T Consensus 335 ~~~~l~~~l~~~-gi~v~~~~~~~~~~~--~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 335 KTFWVTKMLQDD-GVFVNPVVSPAVPAE--ESLIRFSLMATHTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp HHHHHHHHHHHT-TEECEEECTTTSCGG--GCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHC-CcEEEeeCCCCCCCC--CceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 245677765554 999998876532211 2459999999899999999999999988754
No 6
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=100.00 E-value=5.7e-35 Score=289.07 Aligned_cols=326 Identities=25% Similarity=0.361 Sum_probs=261.3
Q ss_pred CCCeeecCCCCeEEECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCc
Q 013461 92 EPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD 171 (442)
Q Consensus 92 ~~~~~~~~~g~~~~~~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~ 171 (442)
.+.++++++|.+++.+|+++|||+++.++|+..+|++++++.+++++++.+++.++..+|..+...++++.+|+++|.++
T Consensus 22 ~~~~~~~~~g~~~~~~g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~ 101 (384)
T 1bs0_A 22 RRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSR 101 (384)
T ss_dssp CCCCCSBCSSSEEEETTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE
T ss_pred ccccccCCCCceEEECCceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCc
Confidence 46778999999999999999999998778877789999999999998876655566666788999999999999999999
Q ss_pred EEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCCCHHHHHHHHHhhcccccc----------
Q 013461 172 SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKR---------- 241 (442)
Q Consensus 172 ~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~d~~~Le~~l~~~~~~~~~---------- 241 (442)
.+++++|++++..++.+++++||.|+++.++|.++..+++..|.+++.++++|+++|++.+++..+..+.
T Consensus 102 ~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~npt 181 (384)
T 1bs0_A 102 ALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMD 181 (384)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTT
T ss_pred EEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999998764221111
Q ss_pred ------------------------cccccccccCCCccccccCCCCCceeEEEEeccccccCCCcEEEcCHHhHHHHHhh
Q 013461 242 ------------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLS 297 (442)
Q Consensus 242 ------------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~GG~v~g~~~~i~~l~~~ 297 (442)
+|+.|.++++|.+..+.++. +.|++++||||++|..|||+++++++++.++..
T Consensus 182 G~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~---~~di~~~s~sK~~~~~GG~~~~~~~~~~~l~~~ 258 (384)
T 1bs0_A 182 GDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV---KPELLVVTFGKGFGVSGAAVLCSSTVADYLLQF 258 (384)
T ss_dssp CCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC---CCSEEEEESSSTTSSCCEEEEECHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCC---CCcEEEeeccchhhccCcEEEeCHHHHHHHHHh
Confidence 44444444334443344442 357999999999998899999999999988775
Q ss_pred CCceeccCCCcHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhH
Q 013461 298 SSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDL 375 (442)
Q Consensus 298 ~~~~~~s~s~~p~~aaaa~aal~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~ 375 (442)
...+.++++.+++.++++.++++.++ ..++++++++++++++.+.|+++ |+++.. +.++++++.++. .
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~--------~ 328 (384)
T 1bs0_A 259 ARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTLAD-SCSAIQPLIVGD--------N 328 (384)
T ss_dssp CHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECS-CCSSBCCEEEES--------H
T ss_pred chhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCcccC-CCCCEEEEEeCC--------H
Confidence 54555565678888888888998876 33568899999999999999987 787763 567788777732 1
Q ss_pred HHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHH
Q 013461 376 QLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 433 (442)
Q Consensus 376 ~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~ 433 (442)
....++.+.++ ++||.+.++..+..+.. ...+|++++..+|++|+++++++|+++
T Consensus 329 ~~~~~l~~~l~-~~gi~v~~~~~~~~~~~--~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 329 SRALQLAEKLR-QQGCWVTAIRPPTVPAG--TARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp HHHHHHHHHHH-HTTEECCEECTTSSCTT--CEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HCCcEEEeecCCCCCCC--CceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 22456777655 45999998766432111 245999999989999999999999864
No 7
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=100.00 E-value=9.7e-34 Score=281.94 Aligned_cols=317 Identities=25% Similarity=0.386 Sum_probs=254.4
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhh
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI 186 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai 186 (442)
||++++||.+|++++++.+|++.+++.+++++++.+.++++..|+..+.+.++++++|+++|.++.+++++|+.++..++
T Consensus 44 ~g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~ 123 (401)
T 2bwn_A 44 GKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATL 123 (401)
T ss_dssp CEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHH
T ss_pred CCCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHH
Confidence 68999999999998988889999999999999877666677778888999999999999999988999999999888888
Q ss_pred hhhc--cCCCEEEeCCCchHHHHHHHHhcCCeEEEecCCCHHHHHHHHHhhcc-cccc----------------------
Q 013461 187 PCFC--KKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTA-DNKR---------------------- 241 (442)
Q Consensus 187 ~a~~--~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~d~~~Le~~l~~~~~-~~~~---------------------- 241 (442)
.++. ++||.|+++.++|.++..+++..|++++.++++|+++|+++++...+ +.+.
T Consensus 124 ~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l 203 (401)
T 2bwn_A 124 STLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDI 203 (401)
T ss_dssp HHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHH
T ss_pred HHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHH
Confidence 7664 58999999999999999999999999999999999999999985431 2111
Q ss_pred ------------cccccccccCCCccccccCCCCCceeEEEEeccccccCCCcEEEcCHHhHHHHHhhCCceeccCCCcH
Q 013461 242 ------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPP 309 (442)
Q Consensus 242 ------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~GG~v~g~~~~i~~l~~~~~~~~~s~s~~p 309 (442)
+|+.|.+|++|.|....+++. ++.|++++||||++|+.|||+++++++++.++....++.++++.++
T Consensus 204 ~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~-~~~~i~~~s~sK~~~~~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~ 282 (401)
T 2bwn_A 204 AEEFGALTYIDEVHAVGMYGPRGAGVAERDGLM-HRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPP 282 (401)
T ss_dssp HHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCG-GGCSEEEEESSSTTCSCCEEEEECHHHHHHHHHHCHHHHTSBCCCH
T ss_pred HHHcCCEEEEeccccccccCCCCceeeeccCcc-ccCcEEEeechhhccCCCCEEecCHHHHHHHHHhCcCceecCCCCH
Confidence 666677777777665555553 3468999999999998899999999999988765555566666677
Q ss_pred HHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHH
Q 013461 310 YLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALK 387 (442)
Q Consensus 310 ~~aaaa~aal~~l~~~--~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~ 387 (442)
..++++.++++.+++. ++++++++++++++.+.|+++ |+++.. +.++++++.++. .....++.+.+++
T Consensus 283 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~L~~ 352 (401)
T 2bwn_A 283 AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIID-HGSHIVPVVIGD--------PVHTKAVSDMLLS 352 (401)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCC-CSSSCEEEECCC--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcccC-CCCCeEEEEeCC--------hHHHHHHHHHHHh
Confidence 8888888999988654 578899999999999999987 887764 456788887732 1224467776555
Q ss_pred hCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 388 EDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 388 ~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
++||.+.++..+..+.+ ...+|++++..+|++|+++++++|++++++
T Consensus 353 ~~gi~v~~~~~~~~~~~--~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 353 DYGVYVQPINFPTVPRG--TERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp HHCEECCEECTTTSCTT--CCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred cCCEEEeecCCCCCCCC--CceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence 56999988765433211 135999999999999999999999987654
No 8
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.97 E-value=6.4e-30 Score=257.59 Aligned_cols=334 Identities=20% Similarity=0.209 Sum_probs=241.2
Q ss_pred CCCHHHHHHHHhhhcCCCCCcccccccccCCCeeecCCCCeEE-ECCeeEEEeec-CCCCCCC-CChHHHHHHHHHHHhc
Q 013461 63 PLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-ISGKEVVNFAS-ANYLGLI-GHEKLLESCTSALEKY 139 (442)
Q Consensus 63 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~G~~~id~~s-~~~l~~~-~~p~v~ea~~~~l~~~ 139 (442)
.++.+++.++..++...++ ...|.++.+++|+++| .||++||||++ +++++++ .||+|++++.++++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~ 108 (439)
T 2oat_A 37 PPTSDDIFEREYKYGAHNY--------HPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKL 108 (439)
T ss_dssp CCCHHHHHHHHHHHBCCCC--------CCCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhccccc--------CCCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhc
Confidence 4566666665555433221 1235677999999999 59999999976 5777888 7899999999999886
Q ss_pred CCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhc---------cCC-C-EEEeCCCchHHHHH
Q 013461 140 GVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFC---------KKG-D-LIVADEGVHWGIQN 208 (442)
Q Consensus 140 g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~---------~~g-d-~Vi~~~~~h~s~~~ 208 (442)
+..+ +.+ ..+.+.++++++++++|.++++++++|++|+..+++++. .+| | +|+.+..+|+.+..
T Consensus 109 ~~~~---~~~--~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~ 183 (439)
T 2oat_A 109 TLTS---RAF--YNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLS 183 (439)
T ss_dssp SCCC---TTS--EESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHH
T ss_pred Cccc---Ccc--CCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHh
Confidence 5322 221 457789999999999999999999999999999998764 245 4 56667788888777
Q ss_pred HHHhcC------------CeEEEecCCCHHHHHHHHH-hhcccc------------c-----c-----------------
Q 013461 209 GLYLSR------------STVVYFKHNDMDSLRNTLE-RVTADN------------K-----R----------------- 241 (442)
Q Consensus 209 ~~~l~g------------~~v~~~~~~d~~~Le~~l~-~~~~~~------------~-----~----------------- 241 (442)
++.+++ ..++.++++|+++|++.++ ...... . .
T Consensus 184 ~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~D 263 (439)
T 2oat_A 184 AISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIAD 263 (439)
T ss_dssp HHTTCCCHHHHTTSCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred HhhcCCChhcccCCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 777766 5778889999999999885 211000 0 0
Q ss_pred -cccccccccCCCcc-ccccCCCCCceeEEEEeccccccCC---CcEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHH
Q 013461 242 -SNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAI 316 (442)
Q Consensus 242 -a~~~g~~G~~g~g~-~~~~~v~~~~~diii~S~sK~lg~~---GG~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~ 316 (442)
.| .| +|++|.+. .+++++.| |++ ||||++|.+ +|++++++++++.++...+..+| +.+|+.++++.
T Consensus 264 Ev~-~g-~g~~g~~~~~~~~~~~~---Di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~--~~~~~~~aaa~ 334 (439)
T 2oat_A 264 EIQ-TG-LARTGRWLAVDYENVRP---DIV--LLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTY--GGNPLGCRVAI 334 (439)
T ss_dssp CTT-TT-TTTTSSSSGGGGGTCCC---SEE--EECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSS--TTCHHHHHHHH
T ss_pred ccc-cC-CccCCcchhHHHhCCCC---cEE--EecccccCCCCCeEEEEECHHHHhccCCCCcccCC--CcCHHHHHHHH
Confidence 22 12 34445443 36677655 454 899999754 79999999998877653334334 45899999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEe
Q 013461 317 TAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV 394 (442)
Q Consensus 317 aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~ 394 (442)
++++.+++. ++.++++++++++++.|+++ ++++. ..+.+.++++.+....+ .+ ..++++.++ ++||++.
T Consensus 335 aal~~~~~~-~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~g~~~~v~l~~~~~---~~---~~~l~~~l~-~~Gv~v~ 405 (439)
T 2oat_A 335 AALEVLEEE-NLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIKETKD---WD---AWKVCLRLR-DNGLLAK 405 (439)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHHHHHHTTS-CTTTEEEEEEETTEEEEEECCCSS---CC---HHHHHHHHH-HTTEECC
T ss_pred HHHHHHhhh-hHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeeeEEEEEEecCcc---HH---HHHHHHHHH-HCCeEEe
Confidence 999988764 57899999999999999886 44421 12467888888854210 01 236777655 4699998
Q ss_pred eccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 395 TSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 395 ~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
+.. +..+|++++..+|++|+++++++|++++++
T Consensus 406 ~~~---------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 406 PTH---------GDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp BSS---------SSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred cCC---------CCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 632 245999999999999999999999988753
No 9
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.97 E-value=2.2e-29 Score=253.33 Aligned_cols=315 Identities=18% Similarity=0.192 Sum_probs=219.3
Q ss_pred CCeeecCCCCeEE-ECCeeEEEeec-CCCCCCC-CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCC
Q 013461 93 PPVLESAAGPHTI-ISGKEVVNFAS-ANYLGLI-GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT 169 (442)
Q Consensus 93 ~~~~~~~~g~~~~-~~G~~~id~~s-~~~l~~~-~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~ 169 (442)
|.++++++|+++| .||++||||++ +++++++ .||+|++++.++++++...+ +. ...+.+.+++++|++++|.
T Consensus 48 ~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~---~~--~~~~~~~~l~~~la~~~g~ 122 (433)
T 1z7d_A 48 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICS---RA--FFSVPLGICERYLTNLLGY 122 (433)
T ss_dssp EEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCC---TT--SEEHHHHHHHHHHHHHHTC
T ss_pred CceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCcc---CC--cCCHHHHHHHHHHHhhcCC
Confidence 5667999999999 49999999977 4677887 78999999999998864322 22 2568889999999999999
Q ss_pred CcEEEEcchHHHHHhhhhhhc---------cCC-CEE-EeCCCchHHHHHHHHhcC------------CeEEEecCCCHH
Q 013461 170 PDSILYSYGLSTMFSAIPCFC---------KKG-DLI-VADEGVHWGIQNGLYLSR------------STVVYFKHNDMD 226 (442)
Q Consensus 170 e~~i~~~sG~~a~~~ai~a~~---------~~g-d~V-i~~~~~h~s~~~~~~l~g------------~~v~~~~~~d~~ 226 (442)
++++++++|++|+..+++++. ++| |.| +.+..+|+.+..++.+++ ..++.++++|++
T Consensus 123 ~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~ 202 (433)
T 1z7d_A 123 DKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLE 202 (433)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHH
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCCCHH
Confidence 999999999999999998753 345 554 556677777666666655 467788889999
Q ss_pred HHHHHHH-hhcccc------------cc-----------------------cccccccccCCCcc-ccccCCCCCceeEE
Q 013461 227 SLRNTLE-RVTADN------------KR-----------------------SNSFGVLGRSGRGL-TEHCGVPVDKIDIV 269 (442)
Q Consensus 227 ~Le~~l~-~~~~~~------------~~-----------------------a~~~g~~G~~g~g~-~~~~~v~~~~~dii 269 (442)
+|++.++ ...... .. ++. | +|++|.+. .+++++.| |++
T Consensus 203 ~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g-~g~~g~~~~~~~~~~~~---di~ 277 (433)
T 1z7d_A 203 ALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-G-LGRTGKLLCVHHYNVKP---DVI 277 (433)
T ss_dssp HHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSGGGGGTCCC---SEE
T ss_pred HHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-C-CCcCCcchhhHhcCCCC---CEE
Confidence 9999984 211000 00 221 2 34445443 36667655 454
Q ss_pred EEeccccccCC---CcEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccC
Q 013461 270 TAAMGHALATE---GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI 346 (442)
Q Consensus 270 i~S~sK~lg~~---GG~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~ 346 (442)
||||++|.+ +|++++++++++.+.......+| +.+|+.++++.++++.+++. ++.++++++++++++.|+++
T Consensus 278 --t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~--~~~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~l 352 (433)
T 1z7d_A 278 --LLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTY--GGNPLAASICVEALNVLINE-KLCENAEKLGGPFLENLKRE 352 (433)
T ss_dssp --EECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTT--TTCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHH
T ss_pred --EECccccCCCCCeEEEEECHHHHhhhccccccccC--CCCHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHH
Confidence 899999744 68999999998877543333333 45899999999999988764 57889999999999998764
Q ss_pred -CCceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHH
Q 013461 347 -HGLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADL 423 (442)
Q Consensus 347 -~g~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei 423 (442)
.+++.. ..+.+.++++.+.... .+ ..++++.++ ++||++.+.. +..+|++++..+|++|+
T Consensus 353 ~~~~~~~~~~~~~g~~~~i~~~~~~----~~---~~~~~~~l~-~~Gv~v~~~~---------~~~iRi~~~~~~t~e~i 415 (433)
T 1z7d_A 353 LKDSKIVRDVRGKGLLCAIEFKNEL----VN---VLDICLKLK-ENGLITRDVH---------DKTIRLTPPLCITKEQL 415 (433)
T ss_dssp HTTCTTEEEEEEETTEEEEEECTTT----CC---HHHHHHHHH-HTTEECCEET---------TTEEEECCCTTCCHHHH
T ss_pred HHhCCCeEEEEeeeeEEEEEEccCh----hH---HHHHHHHHH-HCCeEEecCC---------CCEEEEECCcCCCHHHH
Confidence 133211 1236788888885320 01 236777655 4699998752 24599999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 013461 424 VKACESLKRISAVVLR 439 (442)
Q Consensus 424 ~~~i~~l~~~~~~~~~ 439 (442)
++++++|+++++++..
T Consensus 416 ~~~l~~l~~~l~~~~~ 431 (433)
T 1z7d_A 416 DECTEIIVKTVKFFDE 431 (433)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999877643
No 10
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.97 E-value=1.4e-29 Score=253.39 Aligned_cols=317 Identities=14% Similarity=0.132 Sum_probs=226.7
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeec-CCCCCCC-CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFAS-ANYLGLI-GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s-~~~l~~~-~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g 168 (442)
.|.++++++|+|+| +|||+||||.+ .....++ +||+|++|+.+++++. ...+ +....+.+++++|+++++
T Consensus 69 ~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~-~~~~------~~~~~~~~lae~l~~~~p 141 (454)
T 4ao9_A 69 FPLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGG-INLT------GHNLLEGRLARLICERFP 141 (454)
T ss_dssp CCCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTC-SCCC------SEESSHHHHHHHHHHHST
T ss_pred CCccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcC-CCcc------CCcHHHHHHHHHHHHhCC
Confidence 47789999999999 59999999954 4445555 5899999999999873 2222 234567899999999885
Q ss_pred -CCcEEEEcchHHHHHhhhhh---hccCCCEEEeCCCchHHHHHHHHhc-----CCeEEEecCCCHHHHHHHHHhhcccc
Q 013461 169 -TPDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYLS-----RSTVVYFKHNDMDSLRNTLERVTADN 239 (442)
Q Consensus 169 -~e~~i~~~sG~~a~~~ai~a---~~~~gd~Vi~~~~~h~s~~~~~~l~-----g~~v~~~~~~d~~~Le~~l~~~~~~~ 239 (442)
.+++.+++||++|+++|++. +.+|.++|.++..+|+.+....... ......+|+||.+++++.+++..++.
T Consensus 142 ~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~~~l~~~l~~~~~~i 221 (454)
T 4ao9_A 142 QIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDAQTARAQIERHGPEI 221 (454)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCHHHHHHHHHHTGGGE
T ss_pred CCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCchHHHHHHHHhhcCCce
Confidence 67889999999999999964 4688899999999998764332222 23456788999999999998765443
Q ss_pred cc----------------------------cccccc------cccCCC-ccccccCCCCCceeEEEEeccccccC--CCc
Q 013461 240 KR----------------------------SNSFGV------LGRSGR-GLTEHCGVPVDKIDIVTAAMGHALAT--EGG 282 (442)
Q Consensus 240 ~~----------------------------a~~~g~------~G~~g~-g~~~~~~v~~~~~diii~S~sK~lg~--~GG 282 (442)
.. .|+.-. .|++|. +..+++|+.|| | .|++|++|. +.|
T Consensus 222 AavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tGR~G~~~a~e~~gv~PD---i--~t~gK~lggG~Pig 296 (454)
T 4ao9_A 222 AVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAPHGLANKLGIRSD---L--TTLGKYIGGGMSFG 296 (454)
T ss_dssp EEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGGGGSTTCHHHHHTCCCS---E--EEEEGGGGTTSSCE
T ss_pred EEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcCCCccccchhccCCCCc---E--EEeccccCCCCcce
Confidence 21 111110 144444 44689999985 4 469999963 447
Q ss_pred EEEcCHHhHHHHHhhCCceec--cCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccC---CCc--eeecCC
Q 013461 283 FCTGSARVVDHQRLSSSGYVF--SASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI---HGL--SIASNP 355 (442)
Q Consensus 283 ~v~g~~~~i~~l~~~~~~~~~--s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~---~g~--~~~~~~ 355 (442)
.+.+++++++.+......+.+ +.+.+|++|++++++|+++++ +++.++++++.++|++.|+++ .++ .+. .
T Consensus 297 a~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~-~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vr--g 373 (454)
T 4ao9_A 297 AFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT-PEAAGALAERGEALRARLNALCANEGVAMQFT--G 373 (454)
T ss_dssp EEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEE--E
T ss_pred eeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHhhCCCCEEEe--e
Confidence 899999999987654322222 334589999999999999875 568999999999999999764 122 222 2
Q ss_pred CCCEEEEEecCCC-CCc----hhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHH
Q 013461 356 ESPIVFLILEKST-GSM----KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESL 430 (442)
Q Consensus 356 ~~~i~~~~~~~~~-~~~----~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l 430 (442)
.+.++.+.+.... .+. ..+......+...+++ +||++.|. -++.++..+|++|||++++++
T Consensus 374 ~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~Gv~~~p~-------------~~~~~s~~~T~~dId~~l~al 439 (454)
T 4ao9_A 374 IGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLN-EDIYSSPR-------------GFVVLSLPLTDADIDRYVAAI 439 (454)
T ss_dssp ETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHH-TTEECCTT-------------CEEECCTTCCHHHHHHHHHHH
T ss_pred eceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHH-CCEEEcCC-------------CCEEEeCCCCHHHHHHHHHHH
Confidence 4667777764321 111 1133445566776665 59987643 244566779999999999999
Q ss_pred HHHHHHH
Q 013461 431 KRISAVV 437 (442)
Q Consensus 431 ~~~~~~~ 437 (442)
++++.+.
T Consensus 440 ~~~l~~~ 446 (454)
T 4ao9_A 440 GSFIGGH 446 (454)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 9998764
No 11
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.97 E-value=1.2e-29 Score=257.80 Aligned_cols=323 Identities=12% Similarity=0.100 Sum_probs=230.5
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|.++++++|.++| .||++||||+++ +.+|++ ||+|++|+.+++++++..++ ...+..+.+.+|+++|++++
T Consensus 37 ~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~---~~~~~~~~~~~lae~l~~~~ 112 (472)
T 3hmu_A 37 GTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYG-RDELAEVAARQMRELPYYNT---FFKTTHVPAIALAQKLAELA 112 (472)
T ss_dssp CCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBC-CHHHHHHHHHHHHHCSCCCS---SSSEECHHHHHHHHHHHHHS
T ss_pred CCeeEEEeecCEEEECCCCEEEECCCchhhccCCCC-CHHHHHHHHHHHHhcccccc---ccccCCHHHHHHHHHHHHhC
Confidence 47789999999999 599999999775 556764 89999999999998654332 23356788999999999999
Q ss_pred C--CCcEEEEcchHHHHHhhhhhhcc---------CCCEEEeCCCchHHHHHHHHhcCCe-----------EEEec--C-
Q 013461 168 G--TPDSILYSYGLSTMFSAIPCFCK---------KGDLIVADEGVHWGIQNGLYLSRST-----------VVYFK--H- 222 (442)
Q Consensus 168 g--~e~~i~~~sG~~a~~~ai~a~~~---------~gd~Vi~~~~~h~s~~~~~~l~g~~-----------v~~~~--~- 222 (442)
+ .++++++++|++|+..+++++.. +.++|+.+..+|+.+..++.+++.. +..++ .
T Consensus 113 ~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~ 192 (472)
T 3hmu_A 113 PGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNW 192 (472)
T ss_dssp CTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCH
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCcc
Confidence 5 46889999999999999988763 4567788999998887777766532 22222 2
Q ss_pred ---CC-----------HHHHHHHHHhhcccc-cc---------------------------------------ccccccc
Q 013461 223 ---ND-----------MDSLRNTLERVTADN-KR---------------------------------------SNSFGVL 248 (442)
Q Consensus 223 ---~d-----------~~~Le~~l~~~~~~~-~~---------------------------------------a~~~g~~ 248 (442)
+| +++|++++++..+.. .. ..+||..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~ 272 (472)
T 3hmu_A 193 WAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRT 272 (472)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCccc
Confidence 33 778888887532111 10 2234433
Q ss_pred ccCCCccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcC
Q 013461 249 GRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEEN 325 (442)
Q Consensus 249 G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~ 325 (442)
|+ .+..+++++.|+ ++ ||||++|.+| |++++++++++.+.........+.+.+|+++++++++|+.+++.
T Consensus 273 G~--~~a~~~~~v~pd---i~--t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~ 345 (472)
T 3hmu_A 273 GN--WFGTQTMGIRPH---IM--TIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEE 345 (472)
T ss_dssp SS--SCHHHHHTCCCS---EE--EECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred Cc--cchhHHhCCCCc---ee--eechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 32 345678888764 44 6999997544 89999999999983221122234456899999999999988764
Q ss_pred hHHHHHHH-HHHHHHHHhhccC---CCceeecCCCCCEEEEEecCCCCCchh---h-HHHHHHHHHHHHHhCCEEEeecc
Q 013461 326 PDLITKLK-KNTAILRTGLSDI---HGLSIASNPESPIVFLILEKSTGSMKN---D-LQLLEDIADWALKEDGVFVVTSK 397 (442)
Q Consensus 326 ~~~~~~l~-~~~~~l~~~L~~~---~g~~~~~~~~~~i~~~~~~~~~~~~~~---~-~~~~~~i~~~~L~~~GV~v~~~~ 397 (442)
++.++++ ++.+++++.|+++ +.+... .+.+.++.+.+..+.....+ + .....++++.+++ +||++.+..
T Consensus 346 -~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g 422 (472)
T 3hmu_A 346 -NILDHVRNVAAPYLKEKWEALTDHPLVGEA-KIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFA-NNLIMRHVG 422 (472)
T ss_dssp -THHHHHHHTHHHHHHHHHHGGGGSTTEEEE-EEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHH-TTBCCEEET
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecCceEEEEEecCccccccccchhHHHHHHHHHHHHH-CCcEEEecC
Confidence 5788899 8999999888665 223322 23577888887532110000 0 1234567776554 599998753
Q ss_pred CcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHh
Q 013461 398 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 438 (442)
Q Consensus 398 ~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~ 438 (442)
..|||+++..+|++|+++++++|+++++++.
T Consensus 423 ----------~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 423 ----------DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp ----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2399999999999999999999999988764
No 12
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.97 E-value=7.9e-30 Score=256.91 Aligned_cols=342 Identities=18% Similarity=0.153 Sum_probs=240.3
Q ss_pred CCHHHHHHHHhhhcCCCCCcccccccccCCCeeecCCCCeEE-ECCeeEEEeecCCC---CCCCCChHHHHHHHHHHHhc
Q 013461 64 LTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-ISGKEVVNFASANY---LGLIGHEKLLESCTSALEKY 139 (442)
Q Consensus 64 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~G~~~id~~s~~~---l~~~~~p~v~ea~~~~l~~~ 139 (442)
++.+++.+..+++.|.... ...|.++++++|.+++ .+|++||||+++.+ +|+ .||++++++.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~ 75 (439)
T 3dxv_A 4 MTKALYDRDGAAIGNLQKL-------RFFPLAISGGRGARLIEENGRELIDLSGAWGAASLGY-GHPAIVAAVSAAAANP 75 (439)
T ss_dssp --CCHHHHHHHHBCGGGCC-------CSSCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHHSC
T ss_pred CcHHHHHHHHHHhccCccC-------CCCCceEEEeeeCEEEeCCCCEEEECCCchhhccCCC-CCHHHHHHHHHHHHhc
Confidence 4455666666665543321 1257889999999999 59999999998876 666 6899999999999886
Q ss_pred CCCCCccCccccCcHHHHHHHHHHHhhh--CC-CcEEEEcchHHHHHhhhhh---hccCCCEEEeCCCchHHHHHHHHhc
Q 013461 140 GVGSCGPRGFYGTIDVHLDCEARIAKFL--GT-PDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYLS 213 (442)
Q Consensus 140 g~~~~~~~~~~g~~~~~~~le~~lA~~~--g~-e~~i~~~sG~~a~~~ai~a---~~~~gd~Vi~~~~~h~s~~~~~~l~ 213 (442)
+. ++ ...+..+.+.++++++++++ +. ++++++++|++|+..++++ +.+++++|+++..+|+.+..++.++
T Consensus 76 ~~-~~---~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~ 151 (439)
T 3dxv_A 76 AG-AT---ILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFS 151 (439)
T ss_dssp SC-SC---SSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-
T ss_pred cC-cc---ccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhc
Confidence 32 21 24567899999999999999 45 6889999999999999987 4678888999999999888887776
Q ss_pred CCeE--------------EEecCC----------CHHHHHHHHHhh-cccccc---------------------------
Q 013461 214 RSTV--------------VYFKHN----------DMDSLRNTLERV-TADNKR--------------------------- 241 (442)
Q Consensus 214 g~~v--------------~~~~~~----------d~~~Le~~l~~~-~~~~~~--------------------------- 241 (442)
+... ..++++ |+++|++.+++. .+..+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~ 231 (439)
T 3dxv_A 152 GHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADIC 231 (439)
T ss_dssp ------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHH
T ss_pred CCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHH
Confidence 6432 344554 588899888421 111100
Q ss_pred -----------cccccccccCCC-ccccccCCCCCceeEEEEeccccccC--CCcEEEcCHHhHHHHHhhCCceeccCCC
Q 013461 242 -----------SNSFGVLGRSGR-GLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASL 307 (442)
Q Consensus 242 -----------a~~~g~~G~~g~-g~~~~~~v~~~~~diii~S~sK~lg~--~GG~v~g~~~~i~~l~~~~~~~~~s~s~ 307 (442)
+|+ | +|++|. +..+++++.+ |++ ||||++|+ +.||+++++++++.+...... .+. .
T Consensus 232 ~~~~~~li~DE~~~-g-~g~~g~~~~~~~~~~~~---di~--s~sK~~~~G~riG~~~~~~~~~~~~~~~~~~--~t~-~ 301 (439)
T 3dxv_A 232 RAHGILVVCDEVKV-G-LARSGRLHCFEHEGFVP---DIL--VLGKGLGGGLPLSAVIAPAEILDCASAFAMQ--TLH-G 301 (439)
T ss_dssp HHTTCEEEEECTTT-C-TTTTSSSSGGGGTTCCC---SEE--EECGGGGTTSCCEEEEEEHHHHTSCSSSSCC--TTT-T
T ss_pred HHcCCEEEEecccc-C-CCcCchhhHHHhcCCCC---CEE--EEcchhcCCcceEEEEECHHHHhhhcCCCcC--CCc-c
Confidence 222 1 233444 3446677655 444 89999974 248999999998877654322 334 6
Q ss_pred cHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHH
Q 013461 308 PPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIAD 383 (442)
Q Consensus 308 ~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~----~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~ 383 (442)
+|+.++++.++++.+++ +++.++++++.+++++.|.++ +.+... .+.+.++++.+..+.....++.....++++
T Consensus 302 ~~~~~~aa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (439)
T 3dxv_A 302 NPISAAAGLAVLETIDR-DDLPAMAERKGRLLRDGLSELAKRHPLIGDI-RGRGLACGMELVCDRQSREPARAETAKLIY 379 (439)
T ss_dssp CHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEEEETTTTEECHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccccCCCHHHHHHHHH
Confidence 89999999999998866 457888889988888888654 333332 346778888774321111122334567887
Q ss_pred HHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 384 WALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 384 ~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
.++++ ||++.++... +..+||+++..+|++|+++++++|+++++++
T Consensus 380 ~l~~~-Gv~v~~~~~~-------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 380 RAYQL-GLVVYYVGMN-------GNVLEFTPPLTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp HHHHH-TEECEEESTT-------SCEEEECCCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred HHHHC-CcEEeecCCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 76655 9999887431 2459999999999999999999999998765
No 13
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.97 E-value=9.3e-29 Score=248.38 Aligned_cols=341 Identities=16% Similarity=0.215 Sum_probs=237.1
Q ss_pred HHHHHHHHhhhcCCCCCcccccccccCCCeeecCCCCeEE-ECCeeEEEeecC-CCCCCC-CChHHHHHHHHHHHhcCCC
Q 013461 66 KKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-ISGKEVVNFASA-NYLGLI-GHEKLLESCTSALEKYGVG 142 (442)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~G~~~id~~s~-~~l~~~-~~p~v~ea~~~~l~~~g~~ 142 (442)
.+++-+..++..|.... +..|.++++++|+|+| +|||+||||.++ ....++ +||+|++|+.+++.++...
T Consensus 27 s~~l~~r~~~~~~~~~~-------~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~ 99 (456)
T 4atq_A 27 SQALAERRSAVVAAGVA-------SGVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHT 99 (456)
T ss_dssp HHHHHHHHHHHBCTTCC-------CSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHhCCCCCC-------CCCCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCc
Confidence 34555555555543322 2346778999999999 599999999553 333444 4899999999999986432
Q ss_pred CCccCccccCcHHHHHHHHHHHhhhC---CCcEEEEcchHHHHHhhhh---hhccCCCEEEeCCCchHHHHHHHHhcCC-
Q 013461 143 SCGPRGFYGTIDVHLDCEARIAKFLG---TPDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRS- 215 (442)
Q Consensus 143 ~~~~~~~~g~~~~~~~le~~lA~~~g---~e~~i~~~sG~~a~~~ai~---a~~~~gd~Vi~~~~~h~s~~~~~~l~g~- 215 (442)
+ .+....+...+|.++|+++.+ .+++++++||++|++.|++ .+.+|..+|.++..+|+.+..++.+++.
T Consensus 100 ~----~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~ 175 (456)
T 4atq_A 100 C----FMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKA 175 (456)
T ss_dssp T----TTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCC
T ss_pred c----cCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCc
Confidence 2 223346778899999999985 3578889999999999995 4578889999999999988777766542
Q ss_pred ------------eEEEecCC-----------CHHHHHHHHHhhc----c-cccc--------------------------
Q 013461 216 ------------TVVYFKHN-----------DMDSLRNTLERVT----A-DNKR-------------------------- 241 (442)
Q Consensus 216 ------------~v~~~~~~-----------d~~~Le~~l~~~~----~-~~~~-------------------------- 241 (442)
.+..+|.. +.+.+++.++... . ....
T Consensus 176 ~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~l 255 (456)
T 4atq_A 176 MPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEW 255 (456)
T ss_dssp TTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHH
T ss_pred cccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHH
Confidence 13333321 2344444443221 1 1000
Q ss_pred -------------cccccccccCCCccccccCCCCCceeEEEEeccccccC--CCcEEEcCHHhHHHHHhhCCceeccCC
Q 013461 242 -------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSAS 306 (442)
Q Consensus 242 -------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~--~GG~v~g~~~~i~~l~~~~~~~~~s~s 306 (442)
..++|++|. .+..+++|+.|| | .|++|++|. +.|.+++++++++.+....++.+|+
T Consensus 256 c~~~gillI~DEV~tG~GRtG~--~~a~e~~gv~PD---i--vt~gK~lggg~P~~av~~~~~i~~~~~~~~~~~Tf~-- 326 (456)
T 4atq_A 256 AKEKGIVFIADEVQSGFCRTGE--WFAVDHEGVVPD---I--ITMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYG-- 326 (456)
T ss_dssp HHHHTCEEEEECTTTTTTTTSS--SSGGGGTTCCCS---E--EEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSS--
T ss_pred HhhcCCceEecccccccCCccc--cccccccCCCCc---h--hhhhhcccCcCCceeeEecHHHHhcccccCCCCCCC--
Confidence 455555553 355789999985 4 469999963 3377899999998876655554454
Q ss_pred CcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccC----C--Cceeec--CCCCCEEEEEecCCCCCchhhHHHH
Q 013461 307 LPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI----H--GLSIAS--NPESPIVFLILEKSTGSMKNDLQLL 378 (442)
Q Consensus 307 ~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~----~--g~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~ 378 (442)
.+|+.|++++++|+++++++ +.+++++..+++++.|+++ + ..++++ ...+.++.+.+..+.. ..++....
T Consensus 327 gnpla~aaala~L~~i~~~~-l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~-~~~~~~~~ 404 (456)
T 4atq_A 327 GNPVACAAALAAIDTMEQHD-LNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGS-KEPNAELT 404 (456)
T ss_dssp SCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTS-CCBCHHHH
T ss_pred CChHHHHhhHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCC-CCcCHHHH
Confidence 49999999999999998754 8899999999998888764 1 011111 1246677888765422 22344556
Q ss_pred HHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 379 EDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 379 ~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
.++...+++ +|+++.+.... ...|||+++..+|++|+++++++|+++++.
T Consensus 405 ~~v~~~~~~-~Gvl~~~~g~~-------~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 405 KAVAAACLK-EGVIILTCGTY-------GNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp HHHHHHHHH-TTEECEEECTT-------SCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCEEEecCCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 778887665 59998765321 134999999999999999999999999875
No 14
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.97 E-value=9.8e-29 Score=251.34 Aligned_cols=323 Identities=16% Similarity=0.178 Sum_probs=231.2
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|.++++++|.++| .||++||||+++ +.+|+ +||+|++|+.+++++++.+++ +.+..+.+.+|++++++++
T Consensus 36 ~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~l~~~~~~~~----~~~~~~~~~~la~~l~~~~ 110 (476)
T 3i5t_A 36 AQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGY-GRREIVDAMAHQAMVLPYASP----WYMATSPAARLAEKIATLT 110 (476)
T ss_dssp CCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHCCCCCT----TTCBCHHHHHHHHHHHTTS
T ss_pred CCeeEEEeecCEEEECCCCEEEECCCchhhccCCC-CCHHHHHHHHHHHHhccCccc----CccCCHHHHHHHHHHHhcC
Confidence 47889999999999 599999999776 44666 489999999999998654432 1456789999999999999
Q ss_pred C--CCcEEEEcchHHHHHhhhhhhc---------cCCCEEEeCCCchHHHHHHHHhcCCe------------E--EEecC
Q 013461 168 G--TPDSILYSYGLSTMFSAIPCFC---------KKGDLIVADEGVHWGIQNGLYLSRST------------V--VYFKH 222 (442)
Q Consensus 168 g--~e~~i~~~sG~~a~~~ai~a~~---------~~gd~Vi~~~~~h~s~~~~~~l~g~~------------v--~~~~~ 222 (442)
+ .+++++++||++|+..+++++. ++.++|+.+..+|+.+..++.+++.. + +.+++
T Consensus 111 ~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 190 (476)
T 3i5t_A 111 PGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPN 190 (476)
T ss_dssp STTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCC
T ss_pred CCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCc
Confidence 5 6789999999999999998773 45567888999999888777665532 2 22222
Q ss_pred -----CC---------HHHHHHHHHhhcccc-cc---------------------------------------ccccccc
Q 013461 223 -----ND---------MDSLRNTLERVTADN-KR---------------------------------------SNSFGVL 248 (442)
Q Consensus 223 -----~d---------~~~Le~~l~~~~~~~-~~---------------------------------------a~~~g~~ 248 (442)
++ +++||+++++..... +. ..++|.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr- 269 (476)
T 3i5t_A 191 PRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGR- 269 (476)
T ss_dssp GGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT-
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCcc-
Confidence 21 778998887532111 10 223433
Q ss_pred ccCCC-cccc-ccCCCCCceeEEEEeccccccC---CCcEEEcCHHhHHHHHhhC---C--ceeccCCCcHHHHHHHHHH
Q 013461 249 GRSGR-GLTE-HCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLSS---S--GYVFSASLPPYLASAAITA 318 (442)
Q Consensus 249 G~~g~-g~~~-~~~v~~~~~diii~S~sK~lg~---~GG~v~g~~~~i~~l~~~~---~--~~~~s~s~~p~~aaaa~aa 318 (442)
+|. +..+ ++++.|+ |+ ||||++|+ +.|++++++++++.+.... . ...++.+.+|+++++++++
T Consensus 270 --~G~~~~~~~~~~v~pd---i~--t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aa 342 (476)
T 3i5t_A 270 --CGEWFASEKVFGVVPD---II--TFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALAN 342 (476)
T ss_dssp --TSSSCHHHHTTCCCCS---EE--EECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHH
T ss_pred --ccCceeeecccCCCcc---hh--hhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHH
Confidence 443 3456 8888774 44 69999974 2278999999999886531 1 1123445689999999999
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHhhccCC---CceeecCCCCCEEEEEecCCCCCc---hhhHHHHHHHHHHHHHhCCEE
Q 013461 319 IDVLEENPDLITKLKKNTAILRTGLSDIH---GLSIASNPESPIVFLILEKSTGSM---KNDLQLLEDIADWALKEDGVF 392 (442)
Q Consensus 319 l~~l~~~~~~~~~l~~~~~~l~~~L~~~~---g~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~i~~~~L~~~GV~ 392 (442)
|+.+++ +++.++++++.+++++.|+++. .+... .+.+.++.+.+..+..+. ..+.....++++.+++ +||+
T Consensus 343 L~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~ 419 (476)
T 3i5t_A 343 IELMER-EGIVDQAREMADYFAAALASLRDLPGVAET-RSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFE-LGLI 419 (476)
T ss_dssp HHHHHH-TTHHHHHHHHHHHHHHHHHTTTTSTTEEEE-EEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHH-TTEE
T ss_pred HHHHHh-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecCceeEEEEecCccccccccchhHHHHHHHHHHHH-CCCE
Confidence 998876 3588999999999999887652 23222 245778888775432111 1111235567776665 5999
Q ss_pred EeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013461 393 VVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD 440 (442)
Q Consensus 393 v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~~ 440 (442)
+.+.. ..+||+++..+|++|+++++++|+++++++.++
T Consensus 420 v~~~g----------~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~~ 457 (476)
T 3i5t_A 420 VRPLG----------DLCVISPPLIISRAQIDEMVAIMRQAITEVSAA 457 (476)
T ss_dssp CEEET----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 98742 239999999999999999999999999876543
No 15
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.97 E-value=3.9e-28 Score=244.76 Aligned_cols=324 Identities=16% Similarity=0.157 Sum_probs=227.8
Q ss_pred cCCCeeecCCCCeEE-ECCeeEEEeecC-CCCCCC-CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 91 CEPPVLESAAGPHTI-ISGKEVVNFASA-NYLGLI-GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 91 ~~~~~~~~~~g~~~~-~~G~~~id~~s~-~~l~~~-~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
..|.+|++++|.|+| +|||+||||.++ ....++ +||+|.+|+.+++++....+. .+....+...+|.++|++..
T Consensus 48 ~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~---~~~~~~~~~~~lAe~L~~~~ 124 (473)
T 4e3q_A 48 RGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHA---FFGRMSDQTVMLSEKLVEVS 124 (473)
T ss_dssp HCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCC---CTTEEEHHHHHHHHHHHHHS
T ss_pred CCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccc---cccccCHHHHHHHHHHHhhC
Confidence 347789999999999 599999999554 444455 589999999999998643221 22235678889999999998
Q ss_pred C--CCcEEEEcchHHHHHhhhhhh---------ccCCCEEEeCCCchHHHHHHHHhcCCe-----------EEEe--cC-
Q 013461 168 G--TPDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRST-----------VVYF--KH- 222 (442)
Q Consensus 168 g--~e~~i~~~sG~~a~~~ai~a~---------~~~gd~Vi~~~~~h~s~~~~~~l~g~~-----------v~~~--~~- 222 (442)
+ .+++++++||++|++.|++.. .++..+|.+...+|+.+..++.+++.. ...+ |+
T Consensus 125 p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~ 204 (473)
T 4e3q_A 125 PFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHY 204 (473)
T ss_dssp SCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCH
T ss_pred CCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcc
Confidence 6 568999999999999999753 234457889999999888887776531 1222 11
Q ss_pred ---C---C---------HHHHHHHHHhhcccccc----------------------------------------cccccc
Q 013461 223 ---N---D---------MDSLRNTLERVTADNKR----------------------------------------SNSFGV 247 (442)
Q Consensus 223 ---~---d---------~~~Le~~l~~~~~~~~~----------------------------------------a~~~g~ 247 (442)
+ + .+++++.+......... ..+||+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGR 284 (473)
T 4e3q_A 205 WRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGR 284 (473)
T ss_dssp HHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSST
T ss_pred cccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCc
Confidence 1 0 23455555543322110 455555
Q ss_pred cccCCCccccccCCCCCceeEEEEeccccccC---CCcEEEcCHHhHHHHHhh-------CCceeccCCCcHHHHHHHHH
Q 013461 248 LGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLS-------SSGYVFSASLPPYLASAAIT 317 (442)
Q Consensus 248 ~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~---~GG~v~g~~~~i~~l~~~-------~~~~~~s~s~~p~~aaaa~a 317 (442)
+|. .+.++++|+.|| | .+++|++|. +.|.+++++++++.+... .+++ +.+.+|++|+++++
T Consensus 285 tG~--~fa~e~~gv~PD---i--~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~--T~~Gnpla~Aaala 355 (473)
T 4e3q_A 285 TGN--TWGCVTYDFTPD---A--IISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGF--TASGHPVGCAIALK 355 (473)
T ss_dssp TSS--SCHHHHTTCCCS---E--EEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCC--TTTTCHHHHHHHHH
T ss_pred ccc--hhHHHhcCCCCC---h--HHhcccccCCCCCcccccccHHHHHHhccccccccccccCC--CCCCCcchhhhhhh
Confidence 443 345689999985 4 459999963 237789999999877532 1333 33458999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHhhccC---CCce-eecCCCCCEEEEEecCCCCCc---hhhHHHHHHHHHHHHHhCC
Q 013461 318 AIDVLEENPDLITKLKKNTAILRTGLSDI---HGLS-IASNPESPIVFLILEKSTGSM---KNDLQLLEDIADWALKEDG 390 (442)
Q Consensus 318 al~~l~~~~~~~~~l~~~~~~l~~~L~~~---~g~~-~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~i~~~~L~~~G 390 (442)
+|+++++++ +.++++++.++|++.|+++ +.+. +. ..+.++.+.+..+.... ..+.....++...+++ +|
T Consensus 356 ~L~~i~~~~-l~~~~~~~g~~l~~~L~~l~~~~~v~~vR--G~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~-~G 431 (473)
T 4e3q_A 356 AIDVVMNEG-LAENVRRLAPRFEERLKHIAERPNIGEYR--GIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTD-LG 431 (473)
T ss_dssp HHHHHHHSS-HHHHHHHHHHHHHHHHHHHTTSTTEEEEE--EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH-TT
T ss_pred hhhhhcccc-HHHHHHHHHHHHHHHHHHHhcCCCeeEEe--ecceEEEEEEecCccccccccccHHHHHHHHHHHHH-CC
Confidence 999998754 8899999999999998765 2221 22 24567777764332211 1122334567776665 59
Q ss_pred EEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013461 391 VFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD 440 (442)
Q Consensus 391 V~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~~ 440 (442)
+++.+.. ..+|++++..+|++|+|++++++++++++++.+
T Consensus 432 ll~~~~g----------~~i~l~PPL~it~~eid~~~~~l~~al~~v~ae 471 (473)
T 4e3q_A 432 LICRPLG----------QSVVLCPPFILTEAQMDEMFDKLEKALDKVFAE 471 (473)
T ss_dssp EECEEET----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEecC----------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9987643 239999999999999999999999999988754
No 16
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.97 E-value=1.7e-28 Score=248.80 Aligned_cols=326 Identities=13% Similarity=0.110 Sum_probs=226.9
Q ss_pred CCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC
Q 013461 93 PPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168 (442)
Q Consensus 93 ~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g 168 (442)
|.++++++|.+++ .||++||||+++ +.+|+ +||+|++|+.+++++.+..++ .+.+..+.+.+++++|+++++
T Consensus 34 p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~~~~---~~~~~~~~~~~la~~l~~~~~ 109 (460)
T 3gju_A 34 TRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGY-GRQKIADAIATQAKNLAYYHA---YVGHGTEASITLAKMIIDRAP 109 (460)
T ss_dssp CCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHHSCCCC---CTTCCCHHHHHHHHHHHHHSC
T ss_pred ceEEEEeeccEEEECCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhcccccc---ccccCCHHHHHHHHHHHhhCC
Confidence 4789999999999 599999999776 55666 489999999999998654332 344677889999999999984
Q ss_pred --CCcEEEEcchHHHHHhhhhhhcc---------CCCEEEeCCCchHHHHHHHHhcCCe------------EEEec----
Q 013461 169 --TPDSILYSYGLSTMFSAIPCFCK---------KGDLIVADEGVHWGIQNGLYLSRST------------VVYFK---- 221 (442)
Q Consensus 169 --~e~~i~~~sG~~a~~~ai~a~~~---------~gd~Vi~~~~~h~s~~~~~~l~g~~------------v~~~~---- 221 (442)
.++++++++|++|+..+++++.+ +.++|+.+..+|+.+..++.+++.. +..++
T Consensus 110 ~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (460)
T 3gju_A 110 KGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYY 189 (460)
T ss_dssp TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCG
T ss_pred CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCcc
Confidence 56889999999999999988763 3445667888888887777665432 22222
Q ss_pred --CCC------------HHHHHHHHHhhcccccc---------------------------------------c-ccccc
Q 013461 222 --HND------------MDSLRNTLERVTADNKR---------------------------------------S-NSFGV 247 (442)
Q Consensus 222 --~~d------------~~~Le~~l~~~~~~~~~---------------------------------------a-~~~g~ 247 (442)
++| +++||+.+++....... . .++|.
T Consensus 190 ~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr 269 (460)
T 3gju_A 190 FRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGR 269 (460)
T ss_dssp GGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred ccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 344 68888888743211100 1 12333
Q ss_pred cccCCCccccccCCCCCceeEEEEeccccccCC---CcEEEcCHHhHHHHHhh-----CCceeccCCCcHHHHHHHHHHH
Q 013461 248 LGRSGRGLTEHCGVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLS-----SSGYVFSASLPPYLASAAITAI 319 (442)
Q Consensus 248 ~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~---GG~v~g~~~~i~~l~~~-----~~~~~~s~s~~p~~aaaa~aal 319 (442)
.|+ .+..+++++.|+ +.||||+++.+ .|++++++++++.+... ......+.+.+|+++++++++|
T Consensus 270 ~g~--~~~~~~~~~~pd-----i~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal 342 (460)
T 3gju_A 270 LGT--MFGSDHYGIKPD-----LITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANL 342 (460)
T ss_dssp TSS--SCHHHHHTCCCS-----EEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHH
T ss_pred ccc--cchHhhcCCCCC-----eeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHH
Confidence 332 344577888764 44699999753 38999999999998632 1122234456899999999999
Q ss_pred HHHhcChHHHHHHHHHHHHHHHhhc----cCCCceeecCCCCCEEEEEecCCCCCc---hhhHHHHHHHHHHHHHhCCEE
Q 013461 320 DVLEENPDLITKLKKNTAILRTGLS----DIHGLSIASNPESPIVFLILEKSTGSM---KNDLQLLEDIADWALKEDGVF 392 (442)
Q Consensus 320 ~~l~~~~~~~~~l~~~~~~l~~~L~----~~~g~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~i~~~~L~~~GV~ 392 (442)
+.+++. ++.++++++.+++++.|. +.+.+... .+.+.++++.+..+.... ..+.....++.+.+++ +||+
T Consensus 343 ~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~ 419 (460)
T 3gju_A 343 ELIDEM-DLVTNAGETGAYFRAELAKAVGGHKNVGEV-RGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAA-SGVI 419 (460)
T ss_dssp HHHHHT-THHHHHHHHHHHHHHHHHHHHTTSTTEEEE-EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH-TTEE
T ss_pred HHHHhc-cHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-eeeeEEEEEEEccCccccccccchHHHHHHHHHHHHH-CCeE
Confidence 988653 467778888777777763 33333333 235778888875321110 0111234567776554 5999
Q ss_pred EeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013461 393 VVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD 440 (442)
Q Consensus 393 v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~~ 440 (442)
+.+... +..+||+++..+|++|+++++++|+++++++.++
T Consensus 420 v~~~~~--------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 459 (460)
T 3gju_A 420 GRAMPQ--------GDILGFAPPLCLTREQADIVVSKTADAVKSVFAN 459 (460)
T ss_dssp CEECSS--------SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred EecCCC--------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 988641 2459999999999999999999999999887654
No 17
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.96 E-value=7e-29 Score=247.00 Aligned_cols=328 Identities=14% Similarity=0.101 Sum_probs=232.4
Q ss_pred CeeecCCCCeEEECCee----EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCC
Q 013461 94 PVLESAAGPHTIISGKE----VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT 169 (442)
Q Consensus 94 ~~~~~~~g~~~~~~G~~----~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~ 169 (442)
+++...+|.+++.+|++ +|||++++|.+++.+|+|++++.+++++.+.. ++....|..++++++++.+++++|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~--~y~~~~g~~~l~~~l~~~l~~~~g~ 97 (407)
T 3nra_A 20 EVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQ--AYTEYRGDLGIRDLLAPRLAAFTGA 97 (407)
T ss_dssp -------CCTTTCCSCCCCSCCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHH--HSCCTTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhhhHHHhhcCCCCCceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCC--CcCCCCCCHHHHHHHHHHHHHHhCC
Confidence 56677788888876655 99999999988888999999999999864321 1222346788999999999999986
Q ss_pred -----CcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC-----------CHHHHHHHHH
Q 013461 170 -----PDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----------DMDSLRNTLE 233 (442)
Q Consensus 170 -----e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-----------d~~~Le~~l~ 233 (442)
++++++++|++++..++.+++++||.|+++.++|.++..+++..|++++.++++ |+++|++.++
T Consensus 98 ~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 177 (407)
T 3nra_A 98 PVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK 177 (407)
T ss_dssp CCCTTTSEEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHH
T ss_pred CCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHh
Confidence 678888889999999999999999999999999999999999999999988872 7889998887
Q ss_pred hhcccccc----------------------------------cccccccccCCCccccccCCCCCceeEEEEeccccccC
Q 013461 234 RVTADNKR----------------------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT 279 (442)
Q Consensus 234 ~~~~~~~~----------------------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~ 279 (442)
+.+..... +|+.+.++..+.+.....+....+.+++++||||++|+
T Consensus 178 ~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 257 (407)
T 3nra_A 178 AGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESL 257 (407)
T ss_dssp TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCC
T ss_pred hCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCC
Confidence 63221100 33333222111111222220124578999999999986
Q ss_pred CC---cEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHhhccCCCceeecCC
Q 013461 280 EG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNP 355 (442)
Q Consensus 280 ~G---G~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~-~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~ 355 (442)
.| ||+++++++++.++.....+.+ +.+++.++++.++++..+ ..++.+++++++++++.+.|++++++.+..+.
T Consensus 258 ~G~r~G~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 335 (407)
T 3nra_A 258 SGYRLGVAFGSRAIIARMEKLQAIVSL--RAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ 335 (407)
T ss_dssp GGGCCEEEEECHHHHHHHHHHHHHHTS--SSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCS
T ss_pred CeeeEEEEEcCHHHHHHHHHHHhhhcc--CCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCC
Confidence 66 9999999999988765444333 346666666555554211 12456788889999999999888788876555
Q ss_pred CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHH
Q 013461 356 ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 435 (442)
Q Consensus 356 ~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~ 435 (442)
.+.++++.+.... .+ ..++++.+++++||++.++..+... .+..+||+++. |++||++++++|+++++
T Consensus 336 ~~~~~~~~~~~~~----~~---~~~~~~~l~~~~gi~v~~g~~~~~~---~~~~iRis~~~--~~~~i~~~~~~l~~~~~ 403 (407)
T 3nra_A 336 AGSYLFPRLPKLA----VA---PAEFVKILRLQAGVVVTPGTEFSPH---TADSVRLNFSQ--DHEAAVAAARRIVTLVE 403 (407)
T ss_dssp BSSEECCBCCCBS----SC---HHHHHHHHHHHHCEECEEGGGTCTT---CTTBEEEECCS--CHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCC----CC---HHHHHHHHHHhCCEEEeCchhhCCC---CCCEEEEEeCC--CHHHHHHHHHHHHHHHH
Confidence 5677777664311 01 2356776555569999987765311 13569999985 99999999999999987
Q ss_pred HH
Q 013461 436 VV 437 (442)
Q Consensus 436 ~~ 437 (442)
++
T Consensus 404 ~~ 405 (407)
T 3nra_A 404 RY 405 (407)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 18
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.96 E-value=5.9e-28 Score=244.36 Aligned_cols=339 Identities=17% Similarity=0.156 Sum_probs=236.4
Q ss_pred CCCHHHHHHHHhhhcCCCCCcccccccccCCCeeecCCCCeEE-E-CCe--eEEEeecC---CCCCCCCChHHHHHHHHH
Q 013461 63 PLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-I-SGK--EVVNFASA---NYLGLIGHEKLLESCTSA 135 (442)
Q Consensus 63 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~-~G~--~~id~~s~---~~l~~~~~p~v~ea~~~~ 135 (442)
.++.+++.++..+..-.|+.+..+ ....|.++++++|.++| . ||+ +||||+++ +++|+ +||+|++|+.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~ 103 (457)
T 3tfu_A 27 GLTPEQIIAVDGAHLWHPYSSIGR--EAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGH-GHPALDQALTTQ 103 (457)
T ss_dssp CCCHHHHHHHHHHHBCCTTCCSSC--CSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCB-TCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcCcccccccc--cCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCC-CCHHHHHHHHHH
Confidence 477666665554432222222101 12346788999999999 8 999 99999775 56777 689999999999
Q ss_pred HHhcCCCCCccCccccCcHHHHHHHHHHHhhhC--CCcEEEEcchHHHHHhhhhhhcc-------CC--CEEEeCCCchH
Q 013461 136 LEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--TPDSILYSYGLSTMFSAIPCFCK-------KG--DLIVADEGVHW 204 (442)
Q Consensus 136 l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g--~e~~i~~~sG~~a~~~ai~a~~~-------~g--d~Vi~~~~~h~ 204 (442)
+++++..+ ...+..+...+|+++|+++++ .++++++++|++|+..+++++.+ +| ++|..+..+|+
T Consensus 104 ~~~~~~~~----~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg 179 (457)
T 3tfu_A 104 LRVMNHVM----FGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHG 179 (457)
T ss_dssp HHHCSCCC----SSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCC
T ss_pred HHhccCcc----ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCC
Confidence 99864332 112356888999999999995 57889999999999999987753 33 46777888898
Q ss_pred HHHHHHHhcCC-------------eEEEecC-------CCHHHHHHHHHhhcccccc-----------------------
Q 013461 205 GIQNGLYLSRS-------------TVVYFKH-------NDMDSLRNTLERVTADNKR----------------------- 241 (442)
Q Consensus 205 s~~~~~~l~g~-------------~v~~~~~-------~d~~~Le~~l~~~~~~~~~----------------------- 241 (442)
.+..++.+++. .+..++. +|+++|++.+++..+..+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~ 259 (457)
T 3tfu_A 180 DTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHD 259 (457)
T ss_dssp SSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHH
T ss_pred ccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHH
Confidence 87777766331 1222222 4788899888743221110
Q ss_pred -----------------cccccccccCCCc-cccccCCCCCceeEEEEeccccccC---CCcEEEcCHHhHHHHHhhC-C
Q 013461 242 -----------------SNSFGVLGRSGRG-LTEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLSS-S 299 (442)
Q Consensus 242 -----------------a~~~g~~G~~g~g-~~~~~~v~~~~~diii~S~sK~lg~---~GG~v~g~~~~i~~l~~~~-~ 299 (442)
..++ |++|.+ ..+++++.| |++ ||||+++. +.|++++++++++.+.... .
T Consensus 260 l~~l~~~~gillI~DEv~~g~---gr~G~~~a~~~~~~~p---dii--t~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~ 331 (457)
T 3tfu_A 260 LRDICRRYEVLLIFDEIATGF---GRTGALFAADHAGVSP---DIM--CVGKALTGGYLSLAATLCTADVAHTISAGAAG 331 (457)
T ss_dssp HHHHHHHHTCEEEEECTTTTT---TTTSSSSTHHHHTCCC---SEE--EECGGGGTTSSCCEEEEEEHHHHHHHHHSSSC
T ss_pred HHHHHHHcCCEEEEEcCccCC---ccccchhHhHhcCCCc---eEE--EEChhhhCCCcceEEEEEcHHHHHHhhccCCC
Confidence 1223 334443 346778766 444 89999964 4588999999999986321 1
Q ss_pred --ceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccC---CCceeecCCCCCEEEEEecCCCCCchhh
Q 013461 300 --GYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI---HGLSIASNPESPIVFLILEKSTGSMKND 374 (442)
Q Consensus 300 --~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~---~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 374 (442)
....+.+.+|+++++++++|+.+++. ++.++++++++++++.|.++ +++... .+.+.++++.+..+. +
T Consensus 332 ~~~~~~t~~~n~~a~aaa~aaL~~~~~~-~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~~i~l~~~~-----~ 404 (457)
T 3tfu_A 332 ALMHGPTFMANPLACAVSVASVELLLGQ-DWRTRITELAAGLTAGLDTARALPAVTDV-RVCGAIGVIECDRPV-----D 404 (457)
T ss_dssp SCCCCCTTTTCHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHGGGGGSTTEEEE-EECSSCEEEEESSCC-----C
T ss_pred ceeEecCCCcCHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHhcCCCeeee-ecCCeEEEEEECCcc-----c
Confidence 11233456899999999999988654 47889999999999998765 333322 235778888875431 1
Q ss_pred HHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 375 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 375 ~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
..++.+.+++ +||++.+.. ..+|++++..+|++|+++++++|+++++++
T Consensus 405 ---~~~~~~~l~~-~Gv~v~~~~----------~~lRi~p~~~~t~eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 405 ---LAVATPAALD-RGVWLRPFR----------NLVYAMPPYICTPAEITQITSAMVEVARLV 453 (457)
T ss_dssp ---HHHHHHHHHH-TTEECCCBT----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHH-CCeEEEecC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3467776655 599998642 349999999999999999999999998764
No 19
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.96 E-value=8.7e-28 Score=242.99 Aligned_cols=323 Identities=18% Similarity=0.229 Sum_probs=223.9
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|.++++++|.++| .||++||||+++ +.+|+. ||+|++|+.+++++... ++ ...+..+.+.+|+++|++++
T Consensus 46 ~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~-~p~v~~A~~~~~~~~~~-~~---~~~~~~~~~~~la~~l~~~~ 120 (453)
T 4ffc_A 46 APVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGAS-HPAVAAAIADQATHFTH-TC---FMVTPYEQYVQVAELLNALT 120 (453)
T ss_dssp CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTT-CHHHHHHHHHHHHHCSC-CT---TTTSCCHHHHHHHHHHHHHS
T ss_pred CCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCC-CHHHHHHHHHHHHhccc-cc---cCcCCCHHHHHHHHHHHHhC
Confidence 47789999999999 599999999775 446653 89999999999988532 11 22356788999999999999
Q ss_pred C---CCcEEEEcchHHHHHhhhhhhc---cCCCEEEeCCCchHHHHHHHHhcCC-------------eEEEecCC----C
Q 013461 168 G---TPDSILYSYGLSTMFSAIPCFC---KKGDLIVADEGVHWGIQNGLYLSRS-------------TVVYFKHN----D 224 (442)
Q Consensus 168 g---~e~~i~~~sG~~a~~~ai~a~~---~~gd~Vi~~~~~h~s~~~~~~l~g~-------------~v~~~~~~----d 224 (442)
+ .++++++++|++|+..+++.+. ++.++|+.+..+|+.+..++.+++. .+..++.+ |
T Consensus 121 ~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (453)
T 4ffc_A 121 PGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRD 200 (453)
T ss_dssp SCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTS
T ss_pred CCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccC
Confidence 6 4678999999999999997654 5566778888999888777766543 24444443 3
Q ss_pred ------HHHHHHHH---Hh-hcccccc----------------------------------------cccccccccCCCc
Q 013461 225 ------MDSLRNTL---ER-VTADNKR----------------------------------------SNSFGVLGRSGRG 254 (442)
Q Consensus 225 ------~~~Le~~l---~~-~~~~~~~----------------------------------------a~~~g~~G~~g~g 254 (442)
.++++..+ ++ ....... ..++|..|. .+
T Consensus 201 ~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~--~~ 278 (453)
T 4ffc_A 201 EPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA--WF 278 (453)
T ss_dssp CTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SS
T ss_pred ccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc--cc
Confidence 23333222 21 1111110 122333322 23
Q ss_pred cccccCCCCCceeEEEEeccccccC--CCcEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHH
Q 013461 255 LTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKL 332 (442)
Q Consensus 255 ~~~~~~v~~~~~diii~S~sK~lg~--~GG~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l 332 (442)
..+++++.|+ +.||||++|+ +.|++++++++++.+....... +.+.+|++++++.++++.+++. ++.+++
T Consensus 279 a~~~~~~~pd-----i~t~sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~--t~~~~~~~~aaa~aal~~~~~~-~~~~~~ 350 (453)
T 4ffc_A 279 ASEHEGIVPD-----IVTMAKGIAGGMPLSAVTGRAELMDAVYAGGLGG--TYGGNPVTCAAAVAALGVMREL-DLPARA 350 (453)
T ss_dssp THHHHTCCCS-----EEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCC--SSSSCHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred hhhhcCCCcc-----hHhhhhhhcCCcCeEEEEECHHHHhhhcccCcCC--CCCcCHHHHHHHHHHHHHhhhh-hHHHHH
Confidence 3467777664 4579999975 3389999999998876544333 3345899999999999988653 478888
Q ss_pred HHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCC
Q 013461 333 KKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPV 408 (442)
Q Consensus 333 ~~~~~~l~~~L~~~----~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~ 408 (442)
+++.+++++.|.++ +.+... .+.+.++++.+.... ...++.....++.+.+++ +||++.++..+ ..
T Consensus 351 ~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~-------~~ 420 (453)
T 4ffc_A 351 RAIEASVTSRLSALAEEVDIIGEV-RGRGAMLAIEIVKPG-TLEPDAALTKSIAAEALS-QGVLILTCGTF-------GN 420 (453)
T ss_dssp HHHHHHHHHHHHHHHHHCSSEEEE-EEETTEEEEEEBCTT-SCCBCHHHHHHHHHHHHH-TTEECCEECTT-------SC
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEE-EeeceEEEEEEecCc-ccCCCHHHHHHHHHHHHh-CCCEEecCCCC-------CC
Confidence 88888888887653 333322 235778888874311 111233445677776554 59999886432 24
Q ss_pred ceEEEecCCCCHHHHHHHHHHHHHHHHHHhh
Q 013461 409 GIRLFVSAAHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 409 ~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
.+|++++..+|++|+++++++|+++++++.+
T Consensus 421 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (453)
T 4ffc_A 421 VIRLLPPLVIGDDLLDEGITALSDIIRAKAS 451 (453)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5999999999999999999999999988754
No 20
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.96 E-value=4.8e-28 Score=242.54 Aligned_cols=316 Identities=17% Similarity=0.167 Sum_probs=227.0
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|.++.+++|.++| .+|++||||+++ +++|+ ++|++++++.+++++++..+ +. ...+...++++++++++
T Consensus 39 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~ai~~~~~~~~~~~---~~--~~~~~~~~l~~~la~~~ 112 (420)
T 2pb2_A 39 ADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGH-CHPALVEALKSQGETLWHTS---NV--FTNEPALRLGRKLIDAT 112 (420)
T ss_dssp CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCCCCC---TT--SCCHHHHHHHHHHHHHS
T ss_pred CCceEEeeecCEEEECCCCEEEEccccccccccCC-CCHHHHHHHHHHHHhccccc---Cc--cCCHHHHHHHHHHHhhC
Confidence 46788999999999 599999999876 77888 68999999999998865432 11 25688999999999999
Q ss_pred CCCcEEEEcchHHHHHhhhhhhcc-------CCC--EEEeCCCchHHHHHHHHhcCCe------------EEEecCCCHH
Q 013461 168 GTPDSILYSYGLSTMFSAIPCFCK-------KGD--LIVADEGVHWGIQNGLYLSRST------------VVYFKHNDMD 226 (442)
Q Consensus 168 g~e~~i~~~sG~~a~~~ai~a~~~-------~gd--~Vi~~~~~h~s~~~~~~l~g~~------------v~~~~~~d~~ 226 (442)
|.++++++++|++|+..+++++.. +|+ +|+.+..+|+.+..++.+.+.+ +..++++|++
T Consensus 113 g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~ 192 (420)
T 2pb2_A 113 FAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLH 192 (420)
T ss_dssp SCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCHH
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCHH
Confidence 999999999999999999998764 553 4556667777777777766653 6778888999
Q ss_pred HHHHHHHhhcccc----------c----c-----------cccccc--------cccCCCcc-ccccCCCCCceeEEEEe
Q 013461 227 SLRNTLERVTADN----------K----R-----------SNSFGV--------LGRSGRGL-TEHCGVPVDKIDIVTAA 272 (442)
Q Consensus 227 ~Le~~l~~~~~~~----------~----~-----------a~~~g~--------~G~~g~g~-~~~~~v~~~~~diii~S 272 (442)
+|++.+++.+... . . .|++-+ +|.+|... .+++++.+ |++ |
T Consensus 193 ~le~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~---dii--t 267 (420)
T 2pb2_A 193 AVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTP---DIL--T 267 (420)
T ss_dssp HHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCC---SEE--E
T ss_pred HHHHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCC---CeE--E
Confidence 9998876422100 0 0 111111 23344433 34566654 454 7
Q ss_pred ccccccC--CCcEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccC----
Q 013461 273 MGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI---- 346 (442)
Q Consensus 273 ~sK~lg~--~GG~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~---- 346 (442)
|||++|. +.|++++++++++.++.......| +.+|+.++++.++|+.+++ +++.++++++++++.+.|+++
T Consensus 268 ~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~~t~--~~~~~~~aa~~a~L~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~ 344 (420)
T 2pb2_A 268 SAKALGGGFPVSAMLTTQEIASAFHVGSHGSTY--GGNPLACAVAGAAFDIINT-PEVLQGIHTKRQQFVQHLQAIDEQF 344 (420)
T ss_dssp ECGGGGTTSCCEEEEECHHHHTTCC----CCEE--CCCHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCCCceEEEEEhHHHHHhhcCCCcCccc--CcCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999973 248999999887766543223333 4589999999999998865 568899999999999999764
Q ss_pred CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHH
Q 013461 347 HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKA 426 (442)
Q Consensus 347 ~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~ 426 (442)
+.+... .+.+.++++.+..... ....++.+.+++ +||++.++. +..+|++++..+|++|++++
T Consensus 345 ~~~~~~-~~~g~~~~v~~~~~~~------~~~~~l~~~l~~-~Gi~v~~~~---------~~~iRl~~~~~~t~eei~~~ 407 (420)
T 2pb2_A 345 DIFSDI-RGMGLLIGAELKPKYK------GRARDFLYAGAE-AGVMVLNAG---------ADVMRFAPSLVVEEADIHEG 407 (420)
T ss_dssp CCEEEE-EEETTEEEEEECGGGT------TCHHHHHHHHHH-TTEECEESS---------TTEEEECCCTTCCHHHHHHH
T ss_pred CCeEEE-EecceEEEEEECCCch------HHHHHHHHHHHH-CCCEEEeCC---------CCEEEEECCCCCCHHHHHHH
Confidence 222222 2357888888743110 013467776554 699998753 24599999999999999999
Q ss_pred HHHHHHHHHHHh
Q 013461 427 CESLKRISAVVL 438 (442)
Q Consensus 427 i~~l~~~~~~~~ 438 (442)
+++|++++++++
T Consensus 408 ~~~l~~~l~~~~ 419 (420)
T 2pb2_A 408 MQRFAQAVGKVV 419 (420)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 21
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.96 E-value=1.2e-27 Score=242.36 Aligned_cols=324 Identities=13% Similarity=0.101 Sum_probs=224.0
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|.++++++|.+++ .||++||||+++ +.+|++ ||+|++|+.+++++++..++ ...+..+.+.++++++++++
T Consensus 32 ~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~~~~~~---~~~~~~~~~~~la~~l~~~~ 107 (459)
T 4a6r_A 32 GARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYG-RKDFAEAARRQMEELPFYNT---FFKTTHPAVVELSSLLAEVT 107 (459)
T ss_dssp --CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBC-CHHHHHHHHHHHHHCSCCCT---TSSSCCHHHHHHHHHHHHHS
T ss_pred CCeeEEEeecCEEEECCCCEEEECCCchhcccCCCC-CHHHHHHHHHHHHhcccccc---ccccCCHHHHHHHHHHHHhC
Confidence 46789999999999 599999999765 556664 89999999999998653332 23456789999999999998
Q ss_pred C--CCcEEEEcchHHHHHhhhhhhcc--------CCC-EEEeCCCchHHHHHHHHhcCC------------eEEEec--C
Q 013461 168 G--TPDSILYSYGLSTMFSAIPCFCK--------KGD-LIVADEGVHWGIQNGLYLSRS------------TVVYFK--H 222 (442)
Q Consensus 168 g--~e~~i~~~sG~~a~~~ai~a~~~--------~gd-~Vi~~~~~h~s~~~~~~l~g~------------~v~~~~--~ 222 (442)
+ .++++++++|++|+..+++++.+ ++| +|+.+..+|+....+..+++. .+..++ .
T Consensus 108 ~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 187 (459)
T 4a6r_A 108 PAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPW 187 (459)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCC
T ss_pred CCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCc
Confidence 5 57889999999999999988764 344 566778888877666665442 122222 2
Q ss_pred ----C---C--------HHHHHHHHHhhcccccc----------------------------------------cccccc
Q 013461 223 ----N---D--------MDSLRNTLERVTADNKR----------------------------------------SNSFGV 247 (442)
Q Consensus 223 ----~---d--------~~~Le~~l~~~~~~~~~----------------------------------------a~~~g~ 247 (442)
+ | +++||+.+++..+.... ..++|.
T Consensus 188 ~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr 267 (459)
T 4a6r_A 188 WYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGR 267 (459)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred cccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 2 2 67888888753211100 122333
Q ss_pred cccCCCccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCC-ceeccCCCcHHHHHHHHHHHHHHh
Q 013461 248 LGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSS-GYVFSASLPPYLASAAITAIDVLE 323 (442)
Q Consensus 248 ~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~-~~~~s~s~~p~~aaaa~aal~~l~ 323 (442)
.|+ .+..+++++.|+ + .||||+++.+| |++++++++++.+..... ....+.+.+|+++++++++|+.++
T Consensus 268 ~G~--~~~~~~~~~~pd---i--~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~ 340 (459)
T 4a6r_A 268 TGE--WFGHQHFGFQPD---L--FTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALR 340 (459)
T ss_dssp TSS--SSHHHHHTCCCS---E--EEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred ccc--cchHhhcCCCCC---e--eehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHh
Confidence 332 334567787764 4 46999997544 899999999998873211 111233458999999999999886
Q ss_pred cChHHHHHHH-HHHHHHHHhh-ccC---CCceeecCCCCCEEEEEecCCCCCc---hhhHHHHHHHHHHHHHhCCEEEee
Q 013461 324 ENPDLITKLK-KNTAILRTGL-SDI---HGLSIASNPESPIVFLILEKSTGSM---KNDLQLLEDIADWALKEDGVFVVT 395 (442)
Q Consensus 324 ~~~~~~~~l~-~~~~~l~~~L-~~~---~g~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~i~~~~L~~~GV~v~~ 395 (442)
+. ++.++++ ++.+++++.| +.+ +.+... .+.+.++.+.+..+.... .++.....++++.+++ +||++.+
T Consensus 341 ~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~ 417 (459)
T 4a6r_A 341 DE-GIVQRVKDDIGPYMQKRWRETFSRFEHVDDV-RGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFR-NNLIMRA 417 (459)
T ss_dssp HT-CHHHHHHHTHHHHHHHHHHHHHTTCTTEEEE-EEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHH-TTEECEE
T ss_pred cc-hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EEEEEEEEEEEecCccccccccchHHHHHHHHHHHHH-CCeEEec
Confidence 53 4778888 8888887777 433 333333 245778888775321110 0122235567776655 5999987
Q ss_pred ccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhh
Q 013461 396 SKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 396 ~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
.. ..+||+++..+|++|+++++++|+++++++..
T Consensus 418 ~g----------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (459)
T 4a6r_A 418 CG----------DHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQ 451 (459)
T ss_dssp ET----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 53 23999999999999999999999999987654
No 22
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.96 E-value=1e-27 Score=238.06 Aligned_cols=310 Identities=17% Similarity=0.189 Sum_probs=221.5
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|.++++++|.++| .||++||||+++ +++|+ +||++++++.+++++++.++. .+..+.+.++++++++++
T Consensus 18 ~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~la~~~ 91 (395)
T 3nx3_A 18 FDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGY-NHAKFNAKIKAQVDKLLHTSN-----LYYNENIAAAAKNLAKAS 91 (395)
T ss_dssp CSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-SCHHHHHHHHHHHTTCSCCCT-----TSBCHHHHHHHHHHHHHH
T ss_pred CCceEEeeeeeEEEECCCCEEEECCCcHHhccCCC-CCHHHHHHHHHHHHhcccccc-----ccCCHHHHHHHHHHHHhc
Confidence 46788999999999 599999999876 55666 589999999999988654331 135688999999999999
Q ss_pred CCCcEEEEcchHHHHHhhhhhhc-------cCCC-EEEeCCCchHHHHHHHHhcC------------CeEEEecCCCHHH
Q 013461 168 GTPDSILYSYGLSTMFSAIPCFC-------KKGD-LIVADEGVHWGIQNGLYLSR------------STVVYFKHNDMDS 227 (442)
Q Consensus 168 g~e~~i~~~sG~~a~~~ai~a~~-------~~gd-~Vi~~~~~h~s~~~~~~l~g------------~~v~~~~~~d~~~ 227 (442)
|.++++++++|++|+..+++++. .++| +|+.+..+|+....++.+++ ..+..++++|+++
T Consensus 92 ~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 171 (395)
T 3nx3_A 92 ALERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISS 171 (395)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHHH
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHHH
Confidence 99999999999999999998764 2345 45567777776666655543 4677888999999
Q ss_pred HHHHHHhhcccccc-----------------------------------cc-cccccccCCCccccccCCCCCceeEEEE
Q 013461 228 LRNTLERVTADNKR-----------------------------------SN-SFGVLGRSGRGLTEHCGVPVDKIDIVTA 271 (442)
Q Consensus 228 Le~~l~~~~~~~~~-----------------------------------a~-~~g~~G~~g~g~~~~~~v~~~~~diii~ 271 (442)
|++.++..+..... ++ ++|..|. .+..+++++.+ | +.
T Consensus 172 l~~~l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~--~~~~~~~~~~~---d--~~ 244 (395)
T 3nx3_A 172 VEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK--FFAYEHAQILP---D--IM 244 (395)
T ss_dssp HHTTCCTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGGGTCCC---S--EE
T ss_pred HHHhccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc--chhHHhcCCCC---C--EE
Confidence 98877532210000 11 2332221 12345666654 3 45
Q ss_pred eccccccC--CCcEEEcCHHh-HHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccC--
Q 013461 272 AMGHALAT--EGGFCTGSARV-VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI-- 346 (442)
Q Consensus 272 S~sK~lg~--~GG~v~g~~~~-i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~-- 346 (442)
||||++|+ +.|++++++++ ++.++.......+ +.+|+.++++.++++.+++. ++.++++++.+++++.|.++
T Consensus 245 t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~aa~aal~~~~~~-~~~~~~~~~~~~~~~~l~~~~~ 321 (395)
T 3nx3_A 245 TSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTY--GGNPLVCAGVNAVFEIFKEE-KILENVNKLTPYLEQSLDELIN 321 (395)
T ss_dssp EECGGGTTTSCCEEEEECHHHHHHHSCTTCCSSCB--SCCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccccCCCceEEEEEchhhhhhhcCCcccCCCC--CCCHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 79999964 34899999998 8877654333333 45899999999999987653 47788888888888877653
Q ss_pred --CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHH
Q 013461 347 --HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLV 424 (442)
Q Consensus 347 --~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~ 424 (442)
+.+... .+.+.++++.+.... + ..++.+.++ ++||.+.++. +..+|++++..+|++|++
T Consensus 322 ~~~~~~~~-~~~g~~~~~~~~~~~-----~---~~~~~~~l~-~~Gi~v~~~~---------~~~iRi~~~~~~t~e~i~ 382 (395)
T 3nx3_A 322 EFDFCKKR-KGLGFMQGLSLDKSV-----K---VAKVIQKCQ-ENALLLISCG---------ENDLRFLPPLILQKEHID 382 (395)
T ss_dssp HCTTEEEE-EEETTEEEEEECTTS-----C---HHHHHHHHH-HTTEECEEET---------TTEEEECCCTTCCHHHHH
T ss_pred hCCCeEEE-EeEEEEEEEEeCCcc-----h---HHHHHHHHH-HCCCEEecCC---------CCEEEEECCCCCCHHHHH
Confidence 333322 235778888885421 1 235677654 5699998763 245999999999999999
Q ss_pred HHHHHHHHHHHH
Q 013461 425 KACESLKRISAV 436 (442)
Q Consensus 425 ~~i~~l~~~~~~ 436 (442)
+++++|++++++
T Consensus 383 ~~l~~l~~~l~~ 394 (395)
T 3nx3_A 383 EMSEKLRKALKS 394 (395)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 23
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.96 E-value=9.3e-28 Score=242.49 Aligned_cols=323 Identities=16% Similarity=0.106 Sum_probs=213.0
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|+++++++|.++| .||++||||+++ +++|+. ||+|++|+.+++++.+..+ ...+..+.+.++++++++++
T Consensus 26 ~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~~~~~----~~~~~~~~~~~la~~l~~~~ 100 (448)
T 3dod_A 26 NPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHR-KKELDDAIKKQLGKIAHST----LLGMTNVPATQLAETLIDIS 100 (448)
T ss_dssp SCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBS-CHHHHHHHHHHHTTCSCCC----CSSSEEHHHHHHHHHHHHHS
T ss_pred CCceEEEeeeCEEEECCCCEEEECCcchhhccCCCC-CHHHHHHHHHHHHhccCcc----ccccCCHHHHHHHHHHHHhC
Confidence 47889999999999 599999999764 567765 8999999999998754321 13456788999999999998
Q ss_pred C--CCcEEEEcchHHHHHhhhhhhcc----CC----CE-EEeCCCchHHHHHHHHhcCCe------------EEEecCC-
Q 013461 168 G--TPDSILYSYGLSTMFSAIPCFCK----KG----DL-IVADEGVHWGIQNGLYLSRST------------VVYFKHN- 223 (442)
Q Consensus 168 g--~e~~i~~~sG~~a~~~ai~a~~~----~g----d~-Vi~~~~~h~s~~~~~~l~g~~------------v~~~~~~- 223 (442)
+ .+++++++||++|+..+++++.. +| |. |+.+..+|+....++.+++.. +..++.+
T Consensus 101 ~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (448)
T 3dod_A 101 PKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPY 180 (448)
T ss_dssp CTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCC
T ss_pred CCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCc
Confidence 5 57889999999999999988754 33 55 555666777766665554422 2233332
Q ss_pred ---------------CHHHHHHHHHhhcccccc---------------------------------------c-cccccc
Q 013461 224 ---------------DMDSLRNTLERVTADNKR---------------------------------------S-NSFGVL 248 (442)
Q Consensus 224 ---------------d~~~Le~~l~~~~~~~~~---------------------------------------a-~~~g~~ 248 (442)
|+++||+.++...+..+. . .++|
T Consensus 181 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g-- 258 (448)
T 3dod_A 181 VYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFG-- 258 (448)
T ss_dssp CTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTT--
T ss_pred cccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCC--
Confidence 378899888732211100 1 1233
Q ss_pred ccCCCc-cccccCCCCCceeEEEEeccccccC---CCcEEEcCHHhHHHHHh---hCC--ceeccCCCcHHHHHHHHHHH
Q 013461 249 GRSGRG-LTEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRL---SSS--GYVFSASLPPYLASAAITAI 319 (442)
Q Consensus 249 G~~g~g-~~~~~~v~~~~~diii~S~sK~lg~---~GG~v~g~~~~i~~l~~---~~~--~~~~s~s~~p~~aaaa~aal 319 (442)
.+|.. ..+++++.|+ +.||||++|+ +.|++++++++++.+.. ... ....+.+.+|+.+++++++|
T Consensus 259 -~~g~~~a~~~~~~~~d-----i~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal 332 (448)
T 3dod_A 259 -RTGKMFACEHENVQPD-----LMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENL 332 (448)
T ss_dssp -TTSSSSGGGGGTCCCS-----EEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHH
T ss_pred -cccchhhhhhcCCCCC-----EEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHH
Confidence 33332 4577887764 4479999974 33789999999998764 111 11234456899999999999
Q ss_pred HHHhcChHHHHHHHHHHHHHHHhhccCCC---ceeecCCCCCEEEEEecCCCCCch---hhHHHHHHHHHHHHHhCCEEE
Q 013461 320 DVLEENPDLITKLKKNTAILRTGLSDIHG---LSIASNPESPIVFLILEKSTGSMK---NDLQLLEDIADWALKEDGVFV 393 (442)
Q Consensus 320 ~~l~~~~~~~~~l~~~~~~l~~~L~~~~g---~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~i~~~~L~~~GV~v 393 (442)
+.+++. ++.++++++.+++++.|.++.. +... .+.+.++++.+..+..... .......++++.+++ +||++
T Consensus 333 ~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~ 409 (448)
T 3dod_A 333 ALFESE-NIVEQVAEKSKKLHFLLQDLHALPHVGDI-RQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRE-LGMLT 409 (448)
T ss_dssp HHHHHT-THHHHHHHHHHHHHHHHHHHTTSTTEEEE-EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH-TTEEC
T ss_pred HHHhcc-cHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHH-CCcEE
Confidence 988653 4788888888888888765322 2222 2357788888754321100 000113467776655 59999
Q ss_pred eeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013461 394 VTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD 440 (442)
Q Consensus 394 ~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~~ 440 (442)
.+.. ..+|++++..+|++|+++++++|+++++++...
T Consensus 410 ~~~~----------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 446 (448)
T 3dod_A 410 RPLG----------DVIAFLPPLASTAEELSEMVAIMKQAIHEVTSL 446 (448)
T ss_dssp CEET----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred eccC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 8752 249999999999999999999999999887643
No 24
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.96 E-value=1.3e-27 Score=240.28 Aligned_cols=318 Identities=19% Similarity=0.241 Sum_probs=223.7
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|.++++++|+++| .||++||||+++ +++|+ .||+|++++.+++++ +..+ .+..+.+.++++++++++
T Consensus 38 ~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~-~~~~v~~a~~~~~~~-~~~~------~~~~~~~~~l~~~la~~~ 109 (434)
T 2epj_A 38 YPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGH-KHPRVLEAVEEALAR-GWLY------GAPGEAEVLLAEKILGYV 109 (434)
T ss_dssp SCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHHT-CSCC------SSCCHHHHHHHHHHHHHH
T ss_pred CCeeEEeeecCEEEECCCCEEEEcccchhcccCCC-CCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHHhC
Confidence 37788999999999 599999999776 56777 689999999999987 3322 125678899999999999
Q ss_pred -CCCcEEEEcchHHHHHhhhhh---hccCCCEEEeCCCchHHHHHHHHh-------------cC------CeEEEecCCC
Q 013461 168 -GTPDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYL-------------SR------STVVYFKHND 224 (442)
Q Consensus 168 -g~e~~i~~~sG~~a~~~ai~a---~~~~gd~Vi~~~~~h~s~~~~~~l-------------~g------~~v~~~~~~d 224 (442)
+.++++++++|++|+..++++ +.+++++|+++..+|+.....+.. .| ..++.++++|
T Consensus 110 ~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d 189 (434)
T 2epj_A 110 KRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYND 189 (434)
T ss_dssp CTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCC
Confidence 788899999999999999987 778888888887888644322211 12 2477788899
Q ss_pred HHHHHHHHHhhcccccc--------------------------------------cccccccccCC-CccccccCCCCCc
Q 013461 225 MDSLRNTLERVTADNKR--------------------------------------SNSFGVLGRSG-RGLTEHCGVPVDK 265 (442)
Q Consensus 225 ~~~Le~~l~~~~~~~~~--------------------------------------a~~~g~~G~~g-~g~~~~~~v~~~~ 265 (442)
+++|++.+++..+..+. .++ |. ..| .+..+++++.|
T Consensus 190 ~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~--~~g~~~~~~~~~~~~-- 264 (434)
T 2epj_A 190 VEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GF--RLGLEGAQGYFNIEG-- 264 (434)
T ss_dssp HHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TT--TSSTTHHHHHHTCCC--
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ce--eCCcchhhHHhCCCC--
Confidence 99999999753111110 222 11 112 23345667655
Q ss_pred eeEEEEeccccccC--CCcEEEcCHHhHHHHHhhCCceec-cCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHh
Q 013461 266 IDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVF-SASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG 342 (442)
Q Consensus 266 ~diii~S~sK~lg~--~GG~v~g~~~~i~~l~~~~~~~~~-s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~ 342 (442)
|+ .||||++|+ ++|++++++++++.+...+..+.. +.+.+|+.++++.++++.+++ +++.++++++++++++.
T Consensus 265 -di--~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~-~~~~~~~~~~~~~l~~~ 340 (434)
T 2epj_A 265 -DI--IVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE-EPVYSVSREAAKALEEA 340 (434)
T ss_dssp -SE--EEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred -Ce--eeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHH
Confidence 44 589999976 569999999998877642222222 235689999999999998876 45789999999999999
Q ss_pred hccCC---CceeecCCCCCEEEEEecCCC-CCc----hhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEe
Q 013461 343 LSDIH---GLSIASNPESPIVFLILEKST-GSM----KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV 414 (442)
Q Consensus 343 L~~~~---g~~~~~~~~~~i~~~~~~~~~-~~~----~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~ 414 (442)
|+++. ++.....+.+.++++.+.... ... ..+.....++.+.++ ++||++.++.. .|+.+
T Consensus 341 L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-----------~~~~~ 408 (434)
T 2epj_A 341 ASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEML-RRGVFIAPSNL-----------EAVFT 408 (434)
T ss_dssp HHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHH-HTTEECCSSTT-----------SCEEC
T ss_pred HHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHH-HCCeEEeccCC-----------CcEEE
Confidence 87641 332211235778898885310 000 001223456777655 56999987642 13445
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHh
Q 013461 415 SAAHSEADLVKACESLKRISAVVL 438 (442)
Q Consensus 415 ~~~~t~eei~~~i~~l~~~~~~~~ 438 (442)
+..+|++|+++++++|+++++++.
T Consensus 409 ~~~~t~e~i~~~l~~l~~~l~~~~ 432 (434)
T 2epj_A 409 GLPHQGEALEIAVEGLRSSLKTVL 432 (434)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred eccCCHHHHHHHHHHHHHHHHHHh
Confidence 677899999999999999988764
No 25
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.96 E-value=5.2e-27 Score=237.17 Aligned_cols=321 Identities=17% Similarity=0.248 Sum_probs=221.0
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|.++++++|.++| .||++||||+++ +.+|+ +||+|++|+.+++++... ++ ...+..+.+.+|+++|++++
T Consensus 43 ~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh-~~p~v~~A~~~~~~~~~~-~~---~~~~~~~~~~~la~~l~~~~ 117 (451)
T 3oks_A 43 MPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGN-SAPKVVEAVRSQVGDFTH-TC---FMVTPYEGYVAVCEQLNRLT 117 (451)
T ss_dssp CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCT-TCHHHHHHHHHHHTTCSC-CT---TTTSCCHHHHHHHHHHHHHS
T ss_pred CCceEEEeecCEEEECCCCEEEEcCCCccccccCC-CCHHHHHHHHHHHHhccc-cc---CCccCCHHHHHHHHHHHHhC
Confidence 47789999999999 599999999765 44555 389999999999987532 11 12356788899999999998
Q ss_pred C---CCcEEEEcchHHHHHhhhhhhc---cCCCEEEeCCCchHHHHHHHHhcCC-------------eEEEecCC-----
Q 013461 168 G---TPDSILYSYGLSTMFSAIPCFC---KKGDLIVADEGVHWGIQNGLYLSRS-------------TVVYFKHN----- 223 (442)
Q Consensus 168 g---~e~~i~~~sG~~a~~~ai~a~~---~~gd~Vi~~~~~h~s~~~~~~l~g~-------------~v~~~~~~----- 223 (442)
+ .++++++++|++|+..+++... ++..+|..+..+|+.+..++.+++. .+..++.+
T Consensus 118 ~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (451)
T 3oks_A 118 PVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRD 197 (451)
T ss_dssp SCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHH
T ss_pred CcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccc
Confidence 6 4678999999999999997654 4555677888889888777766543 34555544
Q ss_pred -------------CHHHHHHHHHhh-cccccc-----------------------------cccccc--------cccCC
Q 013461 224 -------------DMDSLRNTLERV-TADNKR-----------------------------SNSFGV--------LGRSG 252 (442)
Q Consensus 224 -------------d~~~Le~~l~~~-~~~~~~-----------------------------a~~~g~--------~G~~g 252 (442)
+++.+++.+++. ...... .|++-+ +|.+|
T Consensus 198 ~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g 277 (451)
T 3oks_A 198 AEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTG 277 (451)
T ss_dssp GGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred cccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccc
Confidence 123333444421 111110 111111 12333
Q ss_pred C-ccccccCCCCCceeEEEEeccccccC--CCcEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHH
Q 013461 253 R-GLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLI 329 (442)
Q Consensus 253 ~-g~~~~~~v~~~~~diii~S~sK~lg~--~GG~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~ 329 (442)
. +..+++++.|+ ++ ||||++|+ +.|++++++++++.+...... .+.+.+|+.++++.++++.+++. ++.
T Consensus 278 ~~~~~~~~~~~pd---i~--t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~aal~~~~~~-~~~ 349 (451)
T 3oks_A 278 AMFACEHEGIDPD---LI--VTAKGIAGGLPLSAVTGRAEIMDSPHVSGLG--GTYGGNPIACAAALATIETIESE-GLV 349 (451)
T ss_dssp SSSGGGGGTCCCS---EE--EECGGGGTTSSCEEEEEEHHHHTCSCTTSBC--CSSSSCHHHHHHHHHHHHHHHHT-THH
T ss_pred cchhhhhcCCCCC---ee--eehhhhhCCcceEEEEECHHHHhhhcCCCcC--CCCCCCHHHHHHHHHHHHHHhhh-hHH
Confidence 3 34567787654 44 79999975 348999999999877644333 34456899999999999988664 478
Q ss_pred HHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCC
Q 013461 330 TKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR 405 (442)
Q Consensus 330 ~~l~~~~~~l~~~L~~~----~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~ 405 (442)
++++++.+++++.|.++ +.+... .+.+.++++.+... ....++.....++++.+++ +||++.+...+
T Consensus 350 ~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~------ 420 (451)
T 3oks_A 350 ARAQQIEKIMKDRLGRLQAEDDRIGDV-RGRGAMIAMELVKA-GTTEPDADLTKALCAGAHA-AGVIVLSCGTY------ 420 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEBST-TSCCBCHHHHHHHHHHHHH-TTEECEEECTT------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEEE-EEeeEEEEEEEecC-ccCCCCHHHHHHHHHHHHh-CCcEEecCCCC------
Confidence 88888888888888654 333322 23577888887431 1111233345677776554 59999886432
Q ss_pred CCCceEEEecCCCCHHHHHHHHHHHHHHHH
Q 013461 406 LPVGIRLFVSAAHSEADLVKACESLKRISA 435 (442)
Q Consensus 406 ~~~~iRi~~~~~~t~eei~~~i~~l~~~~~ 435 (442)
...+|++++..+|++|+++++++|+++++
T Consensus 421 -~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 449 (451)
T 3oks_A 421 -GNVVRFLPPLSIGDDLLNEGLDVLEEVLR 449 (451)
T ss_dssp -SCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 24599999999999999999999998875
No 26
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.96 E-value=6.5e-27 Score=234.93 Aligned_cols=328 Identities=20% Similarity=0.160 Sum_probs=211.2
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|+++++++|.+++ .+|++||||+++ +++|+. +|+|++++.+++++++..+ ...+..+.+.++++++++++
T Consensus 11 ~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~----~~~~~~~~~~~l~~~la~~~ 85 (430)
T 3i4j_A 11 PYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHG-RAEVGERMAAQAARLPFVH----GSQFSSDVLEEYAGRLARFV 85 (430)
T ss_dssp CCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBC-CHHHHHHHHHHHHHCCCCC----TTTCEEHHHHHHHHHHHHHT
T ss_pred CCceEEeeecCEEEECCCCEEEECCCchhccccCCC-CHHHHHHHHHHHHhccccc----ccccCCHHHHHHHHHHHHhC
Confidence 46789999999999 599999999774 677775 8999999999998854322 12356788999999999999
Q ss_pred C--CCcEEEEcchHHHHHhhhhhhcc--------CCCEE-EeCCCchHHHHHHHHhcCC--------------eEEEecC
Q 013461 168 G--TPDSILYSYGLSTMFSAIPCFCK--------KGDLI-VADEGVHWGIQNGLYLSRS--------------TVVYFKH 222 (442)
Q Consensus 168 g--~e~~i~~~sG~~a~~~ai~a~~~--------~gd~V-i~~~~~h~s~~~~~~l~g~--------------~v~~~~~ 222 (442)
+ .++++++++|++|+..+++++.. .+|.| +.+..+|+....+..+.+. .+..+++
T Consensus 86 ~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (430)
T 3i4j_A 86 GLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPK 165 (430)
T ss_dssp TCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECC
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCC
Confidence 6 46889999999999999988752 35554 5566666655444443332 3334444
Q ss_pred C--------CHHHHHHHHHhhccc----------cc-----c-------------------------cc-cccccccCCC
Q 013461 223 N--------DMDSLRNTLERVTAD----------NK-----R-------------------------SN-SFGVLGRSGR 253 (442)
Q Consensus 223 ~--------d~~~Le~~l~~~~~~----------~~-----~-------------------------a~-~~g~~G~~g~ 253 (442)
+ |+++||+.+++..+. .. . .| ++| .+|.
T Consensus 166 ~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~---~~g~ 242 (430)
T 3i4j_A 166 PDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMG---RCGS 242 (430)
T ss_dssp CCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT---TTSS
T ss_pred CcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCC---cccc
Confidence 4 348899888742111 01 0 11 132 2332
Q ss_pred -cccccc-CCCCCceeEEEEeccccccCCC----cEEEcCHHhHHHHHhhCCce--eccCCCcHHHHHHHHHHHHHHhcC
Q 013461 254 -GLTEHC-GVPVDKIDIVTAAMGHALATEG----GFCTGSARVVDHQRLSSSGY--VFSASLPPYLASAAITAIDVLEEN 325 (442)
Q Consensus 254 -g~~~~~-~v~~~~~diii~S~sK~lg~~G----G~v~g~~~~i~~l~~~~~~~--~~s~s~~p~~aaaa~aal~~l~~~ 325 (442)
+..+++ ++.+ |+ .||||++++ | ||+++++++++.+......+ ..+.+.+|+.++++.++|+.+++
T Consensus 243 ~~~~~~~~~~~~---di--~t~sK~l~~-G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~- 315 (430)
T 3i4j_A 243 PLALSRWSGVTP---DI--AVLGKGLAA-GYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVER- 315 (430)
T ss_dssp SSGGGGTTTCCC---SE--EEECGGGTT-TSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHH-
T ss_pred hhhhhhhcCCCC---cE--EEEcccccC-CccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHc-
Confidence 334566 7655 34 469999985 4 89999999999988642211 22345689999999999998866
Q ss_pred hHHHHHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhh-HHHHHHHHHHHHHhCCEEEeeccCcc
Q 013461 326 PDLITKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKND-LQLLEDIADWALKEDGVFVVTSKRSM 400 (442)
Q Consensus 326 ~~~~~~l~~~~~~l~~~L~~~----~g~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~i~~~~L~~~GV~v~~~~~~~ 400 (442)
+++.++++++.+++++.|.++ +++... .+.+.++++.+.+.......+ ...+.++.+.++ ++||++.+..++.
T Consensus 316 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~ 393 (430)
T 3i4j_A 316 EDLTGAAKERGAQLLAGLQALQARFPQMMQV-RGTGLLLGVVLGDLATGQAFETPGIASRIGAAAL-KRGLITYPGSGAE 393 (430)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEC------------CHHHHHHHHH-HTTEECC------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEeccccccCCCccHHHHHHHHHHHH-hCCCEEEeccccc
Confidence 347888888888888877653 444433 245778888874211100000 111356777655 5699998874332
Q ss_pred cccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHh
Q 013461 401 LDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 438 (442)
Q Consensus 401 ~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~ 438 (442)
.+.. +..+||+++..+|++|+++++++|++++++++
T Consensus 394 ~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 429 (430)
T 3i4j_A 394 PNGR--GDHLLLGPPLSITAAEVDGLLALLAGALEDVL 429 (430)
T ss_dssp -------CEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 2111 24599999999999999999999999988764
No 27
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.96 E-value=6.6e-27 Score=235.17 Aligned_cols=324 Identities=17% Similarity=0.221 Sum_probs=221.3
Q ss_pred cCCCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhh
Q 013461 91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166 (442)
Q Consensus 91 ~~~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~ 166 (442)
..|.++++++|.++| .||++||||+++ +.+|+ +||+|++|+.+++++. .. +.+..+...+|+++++++
T Consensus 36 ~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~-~~------~~~~~~~~~~l~~~la~~ 107 (434)
T 3l44_A 36 GAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGH-AHPHITKAITTAAENG-VL------YGTPTALEVKFAKMLKEA 107 (434)
T ss_dssp SCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCB-TCHHHHHHHHHHHHHC-SC------CSSCCHHHHHHHHHHHHH
T ss_pred CCCceEEEeecCEEEECCCCEEEECCCchhccccCC-CCHHHHHHHHHHHHhC-cC------CCCCCHHHHHHHHHHHHh
Confidence 357889999999999 599999999776 34555 5899999999999873 11 123467889999999999
Q ss_pred h-CCCcEEEEcchHHHHHhhhhhhcc--CCC-EEEeCCCchHHHHHHHHhcC-------------------CeEEEecCC
Q 013461 167 L-GTPDSILYSYGLSTMFSAIPCFCK--KGD-LIVADEGVHWGIQNGLYLSR-------------------STVVYFKHN 223 (442)
Q Consensus 167 ~-g~e~~i~~~sG~~a~~~ai~a~~~--~gd-~Vi~~~~~h~s~~~~~~l~g-------------------~~v~~~~~~ 223 (442)
+ +.++++++++|++|+..+++++.. ++| +|+.+..+|+.+..++...+ ..++.++++
T Consensus 108 ~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (434)
T 3l44_A 108 MPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN 187 (434)
T ss_dssp CTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTT
T ss_pred CCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcc
Confidence 8 467889999999999999987653 445 45556667765543333222 256778889
Q ss_pred CHHHHHHHHHhhcccccc----------------------------ccccccc-c------cCCC-ccccccCCCCCcee
Q 013461 224 DMDSLRNTLERVTADNKR----------------------------SNSFGVL-G------RSGR-GLTEHCGVPVDKID 267 (442)
Q Consensus 224 d~~~Le~~l~~~~~~~~~----------------------------a~~~g~~-G------~~g~-g~~~~~~v~~~~~d 267 (442)
|+++|++++++..+.... .|+.-++ . .+|. +..+++++.|+
T Consensus 188 d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~d--- 264 (434)
T 3l44_A 188 NVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPD--- 264 (434)
T ss_dssp CHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCS---
T ss_pred cHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCC---
Confidence 999999999854322111 2221111 0 1222 33466777664
Q ss_pred EEEEeccccccC--CCcEEEcCHHhHHHHHhhCCcee-ccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhc
Q 013461 268 IVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYV-FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS 344 (442)
Q Consensus 268 iii~S~sK~lg~--~GG~v~g~~~~i~~l~~~~~~~~-~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~ 344 (442)
+.||||++|. +.|++++++++++.+......+. .+.+.+|++++++.++++.+++ +++.++++++++++++.|.
T Consensus 265 --i~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~ 341 (434)
T 3l44_A 265 --LTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-EGLYEKLDELGATLEKGIL 341 (434)
T ss_dssp --EEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHH
T ss_pred --eeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHH
Confidence 4579999973 34889999999988765321222 2345689999999999998876 4588899999999998887
Q ss_pred cC---CCceeecCCCCCEEEEEecCCCCCc-----hhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecC
Q 013461 345 DI---HGLSIASNPESPIVFLILEKSTGSM-----KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA 416 (442)
Q Consensus 345 ~~---~g~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~ 416 (442)
++ .++.....+.+.++++.+....... .++.....++.+.++ ++||++.++.. +.+|++ .
T Consensus 342 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~---------~~~rl~--~ 409 (434)
T 3l44_A 342 EQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLML-QEGVNLAPSKY---------EAWFLT--T 409 (434)
T ss_dssp HHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHH-HTTEECCSSTT---------CCEECC--T
T ss_pred HHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHH-HCCeEEeecCC---------CcEEEe--c
Confidence 64 1221111245778888774321100 012223456777655 45999987643 237774 5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhc
Q 013461 417 AHSEADLVKACESLKRISAVVLRD 440 (442)
Q Consensus 417 ~~t~eei~~~i~~l~~~~~~~~~~ 440 (442)
.+|++|+++++++|+++++++.++
T Consensus 410 ~~t~e~i~~~l~~l~~~l~~~~~~ 433 (434)
T 3l44_A 410 EHTKEDIEYTIEAVGRAFAALADN 433 (434)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999877543
No 28
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.95 E-value=5.6e-27 Score=235.03 Aligned_cols=317 Identities=20% Similarity=0.304 Sum_probs=219.9
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|.++++++|+++| .||++||||+++ +++|+ +||+|++++.+++++ +..++ +..+.+.++++.+++++
T Consensus 34 ~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~-~~~~~------~~~~~~~~l~~~l~~~~ 105 (424)
T 2e7u_A 34 TPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGH-AHPKVLARVRETLER-GLTFG------APSPLEVALAKKVKRAY 105 (424)
T ss_dssp CCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHHT-CSCCS------SCCHHHHHHHHHHHHHC
T ss_pred CCeeEEeeecCEEEeCCCCEEEEccccccccccCC-CCHHHHHHHHHHHHh-CCCCC------CCCHHHHHHHHHHHHhC
Confidence 36778999999999 599999999876 57788 799999999999987 43221 35678899999999999
Q ss_pred -CCCcEEEEcchHHHHHhhhhh---hccCCCEEEeCCCchHHHHHHHHh-------------cC------CeEEEecCCC
Q 013461 168 -GTPDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYL-------------SR------STVVYFKHND 224 (442)
Q Consensus 168 -g~e~~i~~~sG~~a~~~ai~a---~~~~gd~Vi~~~~~h~s~~~~~~l-------------~g------~~v~~~~~~d 224 (442)
+.++++++++|++|+..++++ +.+++++|+.+..+|+.....+.. .| .+++.++++|
T Consensus 106 ~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d 185 (424)
T 2e7u_A 106 PFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYND 185 (424)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCC
Confidence 678889999999999999985 778888888888888644332221 12 3577888899
Q ss_pred HHHHHHHHHhhcccccc---------------------------ccccccc-c------cCC-CccccccCCCCCceeEE
Q 013461 225 MDSLRNTLERVTADNKR---------------------------SNSFGVL-G------RSG-RGLTEHCGVPVDKIDIV 269 (442)
Q Consensus 225 ~~~Le~~l~~~~~~~~~---------------------------a~~~g~~-G------~~g-~g~~~~~~v~~~~~dii 269 (442)
+++|++.+++..+..+. .|++-++ . ..| .+..+++++.| |+
T Consensus 186 ~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~---di- 261 (424)
T 2e7u_A 186 PEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEAKAYGVLLIADEVMTGFRLAFGGATELLGLKP---DL- 261 (424)
T ss_dssp HHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHGGGGTCEEEEECTTTTTTSSTTHHHHHHTCCC---SE-
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHcCCEEEEecCccccccchhHHHHHhCCCc---ch-
Confidence 99999998743111110 1111110 0 111 12334566655 44
Q ss_pred EEeccccccC--CCcEEEcCHHhHHHHHhhCCceecc-CCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccC
Q 013461 270 TAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFS-ASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI 346 (442)
Q Consensus 270 i~S~sK~lg~--~GG~v~g~~~~i~~l~~~~~~~~~s-~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~ 346 (442)
.||||++|. ++|++++++++++.++.....+..+ .+.+|+.++++.++++.+++.+++.++++++++++++.|+++
T Consensus 262 -~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~ 340 (424)
T 2e7u_A 262 -VTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEV 340 (424)
T ss_dssp -EEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 489999975 5699999999998776532222222 256899999999999988664568899999999999998764
Q ss_pred ---CCceeecCCCCCEEEEEecCCC-CCc----hhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCC
Q 013461 347 ---HGLSIASNPESPIVFLILEKST-GSM----KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAH 418 (442)
Q Consensus 347 ---~g~~~~~~~~~~i~~~~~~~~~-~~~----~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~ 418 (442)
.++.....+.+.++++.+.... ... ..+.....++.+.++ ++||++.++.. .|+.++..+
T Consensus 341 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-----------~~~~~~~~~ 408 (424)
T 2e7u_A 341 LKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPPSNF-----------EAAFLSVAH 408 (424)
T ss_dssp HHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCSSSS-----------SCEECCTTC
T ss_pred HHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEeccCC-----------CceEeeccC
Confidence 1432111235778888875310 000 001223456777655 57999987542 134455779
Q ss_pred CHHHHHHHHHHHHHH
Q 013461 419 SEADLVKACESLKRI 433 (442)
Q Consensus 419 t~eei~~~i~~l~~~ 433 (442)
|++|+++++++|+++
T Consensus 409 t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 409 REEDVEKTLEALRKA 423 (424)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999875
No 29
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.95 E-value=8.7e-27 Score=235.59 Aligned_cols=326 Identities=13% Similarity=0.111 Sum_probs=223.5
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|+++++++|.+++ .||++||||+++ +++|+. ||+|++|+.+++++++. + ...+..+.+.++++++++++
T Consensus 31 ~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~~~-~----~~~~~~~~~~~la~~l~~~~ 104 (452)
T 3n5m_A 31 STTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYG-RKELAEAAYKQLQTLSY-F----PMSQSHEPAIKLAEKLNEWL 104 (452)
T ss_dssp GCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBC-CHHHHHHHHHHHTTCCC-C----CTTSEEHHHHHHHHHHHHHH
T ss_pred CCceEEEeeeCEEEECCCCEEEECCcchhhccCCCC-CHHHHHHHHHHHHhcCC-c----ccccCCHHHHHHHHHHHHhC
Confidence 47889999999999 599999999876 777874 89999999999988544 1 12356789999999999999
Q ss_pred CCC-cEEEEcchHHHHHhhhhhhc-----c---CCC-EEEeCCCchHHHHHHHHhcCCe------------EEEe-----
Q 013461 168 GTP-DSILYSYGLSTMFSAIPCFC-----K---KGD-LIVADEGVHWGIQNGLYLSRST------------VVYF----- 220 (442)
Q Consensus 168 g~e-~~i~~~sG~~a~~~ai~a~~-----~---~gd-~Vi~~~~~h~s~~~~~~l~g~~------------v~~~----- 220 (442)
+.+ +++++++|++|+..+++++. . ++| +|+.+..+|+....++.+.+.. +..+
T Consensus 105 ~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (452)
T 3n5m_A 105 GGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDC 184 (452)
T ss_dssp TSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCT
T ss_pred CCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCcc
Confidence 743 37888899999999998876 3 444 5666777887776666655432 2222
Q ss_pred ---cCCC---------HHHHHHHHHhhc-ccccc-----c-ccccc------------------------------cccC
Q 013461 221 ---KHND---------MDSLRNTLERVT-ADNKR-----S-NSFGV------------------------------LGRS 251 (442)
Q Consensus 221 ---~~~d---------~~~Le~~l~~~~-~~~~~-----a-~~~g~------------------------------~G~~ 251 (442)
++|| +++||+.+++.. +..+. . ++.|. +|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~ 264 (452)
T 3n5m_A 185 YRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRT 264 (452)
T ss_dssp TTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred ccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcc
Confidence 2355 889999887211 11000 0 11110 1223
Q ss_pred CC-ccccccCCCCCceeEEEEeccccccCCC----cEEEcCHHhHHHHHh--hCCce--eccCCCcHHHHHHHHHHHHHH
Q 013461 252 GR-GLTEHCGVPVDKIDIVTAAMGHALATEG----GFCTGSARVVDHQRL--SSSGY--VFSASLPPYLASAAITAIDVL 322 (442)
Q Consensus 252 g~-g~~~~~~v~~~~~diii~S~sK~lg~~G----G~v~g~~~~i~~l~~--~~~~~--~~s~s~~p~~aaaa~aal~~l 322 (442)
|. +..+++++.|+ + .||||++++ | |++++++++++.++. ....+ ..+.+.+|+++++++++++.+
T Consensus 265 g~~~~~~~~~~~~d---i--~t~sK~l~~-G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~ 338 (452)
T 3n5m_A 265 GKAFGFMNYDVKPD---I--ITMAKGITS-AYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEII 338 (452)
T ss_dssp SSSSGGGGTTCCCS---E--EEECGGGGT-TSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHH
T ss_pred cccchhhhcCCCCC---E--EeecccccC-CCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHH
Confidence 33 24567777654 4 469999975 5 899999999998753 11121 234456899999999999988
Q ss_pred hcChHHHHHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCc-hhhHHHHHHHHHHHHHhCCEEEeecc
Q 013461 323 EENPDLITKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSM-KNDLQLLEDIADWALKEDGVFVVTSK 397 (442)
Q Consensus 323 ~~~~~~~~~l~~~~~~l~~~L~~~----~g~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~i~~~~L~~~GV~v~~~~ 397 (442)
++ +++.++++++.+++++.|.++ +.+... .+.+.++++.+....... ..+.....++++.++ ++||++.+..
T Consensus 339 ~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~ 415 (452)
T 3n5m_A 339 EN-ENLIERSAQMGSLLLEQLKEEIGEHPLVGDI-RGKGLLVGIELVNDKETKEPIDNDKIASVVNACK-EKGLIIGRNG 415 (452)
T ss_dssp HH-TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE-EESSSCEEEEEEEETTTTEECCHHHHHHHHHHHH-HTTEECEECT
T ss_pred Hh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHH-HCCcEEeecC
Confidence 65 347888888888888888653 333332 235667777663221111 001223456777655 4599999876
Q ss_pred CcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHH
Q 013461 398 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 435 (442)
Q Consensus 398 ~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~ 435 (442)
.+.. .. +..+||+++..+|++|+++++++|+++++
T Consensus 416 ~~~~-~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 416 MTTA-GY--NNILTLAPPLVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp TSST-TC--CCEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred cccC-CC--CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 5421 11 35699999999999999999999998865
No 30
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.95 E-value=7.5e-27 Score=234.51 Aligned_cols=319 Identities=17% Similarity=0.203 Sum_probs=219.5
Q ss_pred cCCCeeecCCCCeEE-ECCeeEEEeecCC---CCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhh
Q 013461 91 CEPPVLESAAGPHTI-ISGKEVVNFASAN---YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166 (442)
Q Consensus 91 ~~~~~~~~~~g~~~~-~~G~~~id~~s~~---~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~ 166 (442)
..|.++++++|.++| +||++||||+++. .+|+ +||+|++|+.+++++... ++...+...+|+++++++
T Consensus 34 ~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~-------~~~~~~~~~~l~~~la~~ 105 (429)
T 3k28_A 34 MNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGH-ANDRVVEALKAVAERGTS-------FGAPTEIENKLAKLVIER 105 (429)
T ss_dssp CCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCB-SCHHHHHHHHHHHHHCSC-------CSSCCHHHHHHHHHHHHH
T ss_pred CCCceEEEeecCEEEECCCCEEEECCCChhhcccCC-CCHHHHHHHHHHHhhCcC-------cCCCCHHHHHHHHHHHHh
Confidence 357889999999999 5999999997763 3554 589999999999988431 223467889999999999
Q ss_pred h-CCCcEEEEcchHHHHHhhhhhhc---cCCCEEEeCCCchHHHHHHHHhcC-------------------CeEEEecCC
Q 013461 167 L-GTPDSILYSYGLSTMFSAIPCFC---KKGDLIVADEGVHWGIQNGLYLSR-------------------STVVYFKHN 223 (442)
Q Consensus 167 ~-g~e~~i~~~sG~~a~~~ai~a~~---~~gd~Vi~~~~~h~s~~~~~~l~g-------------------~~v~~~~~~ 223 (442)
+ +.++++++++|++|+..+++++. ++..+|+.+..+|+.+..++...+ ..++.++++
T Consensus 106 ~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (429)
T 3k28_A 106 VPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN 185 (429)
T ss_dssp STTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETT
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCC
Confidence 8 57889999999999999998764 344456667778766544333222 256778889
Q ss_pred CHHHHHHHHHhhcccccc----------------------------ccccccc-c------cCCC-ccccccCCCCCcee
Q 013461 224 DMDSLRNTLERVTADNKR----------------------------SNSFGVL-G------RSGR-GLTEHCGVPVDKID 267 (442)
Q Consensus 224 d~~~Le~~l~~~~~~~~~----------------------------a~~~g~~-G------~~g~-g~~~~~~v~~~~~d 267 (442)
|+++|++++++..+.... .|+.-++ . .+|. +..+++++.|+
T Consensus 186 d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~d--- 262 (429)
T 3k28_A 186 DLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPD--- 262 (429)
T ss_dssp CHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHTCCCS---
T ss_pred CHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhCCCCc---
Confidence 999999999854322111 1111111 0 2222 33566777654
Q ss_pred EEEEeccccccC--CCcEEEcCHHhHHHHHhhCCce-eccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhc
Q 013461 268 IVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGY-VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS 344 (442)
Q Consensus 268 iii~S~sK~lg~--~GG~v~g~~~~i~~l~~~~~~~-~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~ 344 (442)
+.||||++|+ +.|++++++++++.+......+ ..+.+.+|++++++.++++.++ ++++++++++++++++.|+
T Consensus 263 --i~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~--~~~~~~~~~~~~~l~~~L~ 338 (429)
T 3k28_A 263 --LTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT--PESYVEFERKAEMLEAGLR 338 (429)
T ss_dssp --EEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHHHHH
T ss_pred --eehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 4579999974 4589999999998875432211 2234568999999999998775 5788999999999999887
Q ss_pred cC----CCceeecCCCCCEEEEEecCCCCCc-----hhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEec
Q 013461 345 DI----HGLSIASNPESPIVFLILEKSTGSM-----KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS 415 (442)
Q Consensus 345 ~~----~g~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~ 415 (442)
++ +.+... .+.+.++++.+..+.... .++.....++++.++ ++||++.++.. ..+|++
T Consensus 339 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~---------~~~r~~-- 405 (429)
T 3k28_A 339 KAAEKHGIPHHI-NRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMV-EQGVFLPPSQF---------EGLFLS-- 405 (429)
T ss_dssp HHHHHTTCCCEE-EEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSSTT---------SCBCCC--
T ss_pred HHHhhCCCCEEE-EeeccEEEEEEecCCcccccccccccHHHHHHHHHHHH-HCCeEEecCCC---------CCEEEE--
Confidence 64 222222 235677887764321100 012233457777655 56999987532 237774
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 013461 416 AAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 416 ~~~t~eei~~~i~~l~~~~~~~ 437 (442)
..+|++|+++++++|+++++++
T Consensus 406 ~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 406 TVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999987653
No 31
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.95 E-value=1.9e-26 Score=231.03 Aligned_cols=320 Identities=20% Similarity=0.233 Sum_probs=222.8
Q ss_pred CCeeecCCCCeEE-ECCeeEEEeecCC---CCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh-
Q 013461 93 PPVLESAAGPHTI-ISGKEVVNFASAN---YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL- 167 (442)
Q Consensus 93 ~~~~~~~~g~~~~-~~G~~~id~~s~~---~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~- 167 (442)
|.++.+++|+++| .+|+++|||+++. ++|+ ++|++++++.+++++++..+ ..++..+...+|++.||+++
T Consensus 24 ~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~----~~~~~~~~~~~l~~~la~~~~ 98 (426)
T 1sff_A 24 PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKLSHTC----FQVLAYEPYLELCEIMNQKVP 98 (426)
T ss_dssp EEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHTTTCSCCC----TTTEECHHHHHHHHHHHHHSS
T ss_pred CceEEecccCEEEeCCCCEEEEcccChhhcccCC-CCHHHHHHHHHHHHhCCCcc----ccccCCHHHHHHHHHHHHhCC
Confidence 5677899999999 5999999997764 6776 68999999999998765432 13556788899999999999
Q ss_pred C-C-CcEEEEcchHHHHHhhhh---hhccCCCEEEeCCCchHHHHHHHHhcCCe-------------EEEecC-----C-
Q 013461 168 G-T-PDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRST-------------VVYFKH-----N- 223 (442)
Q Consensus 168 g-~-e~~i~~~sG~~a~~~ai~---a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~-------------v~~~~~-----~- 223 (442)
| . ++++++++|++|+..++. ++.++|++|+.+..+|..+..++.+.+.+ ++.++. +
T Consensus 99 ~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~ 178 (426)
T 1sff_A 99 GDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGI 178 (426)
T ss_dssp CSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTB
T ss_pred cccccEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCcccccc
Confidence 5 4 567888899999999988 77888877777888888777777776643 544443 2
Q ss_pred ----CHHHHHHHHHhhc--ccccc--------------------------------------cccccccccCCCcc-ccc
Q 013461 224 ----DMDSLRNTLERVT--ADNKR--------------------------------------SNSFGVLGRSGRGL-TEH 258 (442)
Q Consensus 224 ----d~~~Le~~l~~~~--~~~~~--------------------------------------a~~~g~~G~~g~g~-~~~ 258 (442)
|+++|++.+++.. +..+. +|+ | ++.+|... .+.
T Consensus 179 ~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~~~ 256 (426)
T 1sff_A 179 SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-G-AGRTGTLFAMEQ 256 (426)
T ss_dssp CHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSGGGG
T ss_pred chHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-c-cCcccchhhhhh
Confidence 6778888886310 11000 121 1 12222222 233
Q ss_pred cCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHH
Q 013461 259 CGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKN 335 (442)
Q Consensus 259 ~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~ 335 (442)
+++. +|+ .||||++|+ | ||+++++++++.+... ....+.+.+++.++++.++++.+++. ++.++++++
T Consensus 257 ~~~~---~di--~s~sK~~~~-GlriG~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~aal~~~~~~-~~~~~~~~~ 327 (426)
T 1sff_A 257 MGVA---PDL--TTFAKSIAG-GFPLAGVTGRAEVMDAVAPG--GLGGTYAGNPIACVAALEVLKVFEQE-NLLQKANDL 327 (426)
T ss_dssp TTSC---CSE--EEECGGGGT-SSCCEEEEEEHHHHTTSCTT--SBCCSSSSCHHHHHHHHHHHHHHHHT-THHHHHHHH
T ss_pred cCCC---CCE--EEEcccccC-CCceEEEEEcHHHHhhhccC--CcCcCCCCCHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 4433 344 489999987 6 9999999988776532 22334456888888888999988764 477888999
Q ss_pred HHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceE
Q 013461 336 TAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIR 411 (442)
Q Consensus 336 ~~~l~~~L~~~----~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iR 411 (442)
++++++.|+++ +.+... .+.++++++.+........++.....++.+.++ ++||.+.++... +..+|
T Consensus 328 ~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~-------~~~iR 398 (426)
T 1sff_A 328 GQKLKDGLLAIAEKHPEIGDV-RGLGAMIAIELFEDGDHNKPDAKLTAEIVARAR-DKGLILLSCGPY-------YNVLR 398 (426)
T ss_dssp HHHHHHHHHHHHHTCTTEEEE-EEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHH-HTTEECEEESTT-------SCEEE
T ss_pred HHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccccCCChHHHHHHHHHHH-HCCcEEecCCCC-------CCEEE
Confidence 99999888763 222222 234788898884211000011223456777655 569999987542 24599
Q ss_pred EEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 412 LFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 412 i~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
++++..+|++|+++++++|+++++++
T Consensus 399 i~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 399 ILVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCccCCHHHHHHHHHHHHHHHHHH
Confidence 99998899999999999999988765
No 32
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.95 E-value=2.3e-26 Score=230.70 Aligned_cols=319 Identities=17% Similarity=0.229 Sum_probs=219.9
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|.++++++|.++| .||++||||+++ +.+|+ +||+|++++.+++++.. .++ ...+.+.++++++++++
T Consensus 34 ~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~-~~~------~~~~~~~~la~~l~~~~ 105 (427)
T 3fq8_A 34 QPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGH-AHPEVIEALKVAMEKGT-SFG------APCALENVLAEMVNDAV 105 (427)
T ss_dssp CCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHTTCS-CCS------SCCHHHHHHHHHHHHHS
T ss_pred CCceEEEeeeCEEEECCCCEEEECCCchhhhccCC-CCHHHHHHHHHHHHhCC-CcC------CCCHHHHHHHHHHHHhC
Confidence 47789999999999 599999999776 44555 58999999999998742 111 25688899999999998
Q ss_pred C-CCcEEEEcchHHHHHhhh---hhhccCCCEEEeCCCchHHHHHHHHhcC-------------------CeEEEecCCC
Q 013461 168 G-TPDSILYSYGLSTMFSAI---PCFCKKGDLIVADEGVHWGIQNGLYLSR-------------------STVVYFKHND 224 (442)
Q Consensus 168 g-~e~~i~~~sG~~a~~~ai---~a~~~~gd~Vi~~~~~h~s~~~~~~l~g-------------------~~v~~~~~~d 224 (442)
+ .++++++++|++|+..++ ..+.+++++|+.+..+|+.+.......+ ..++.++++|
T Consensus 106 ~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 185 (427)
T 3fq8_A 106 PSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYND 185 (427)
T ss_dssp TTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCC
Confidence 5 678899999999999999 4556777778888888865432222111 2377888999
Q ss_pred HHHHHHHHHhhcccccc----------------------------ccccccc-c------cCC-CccccccCCCCCceeE
Q 013461 225 MDSLRNTLERVTADNKR----------------------------SNSFGVL-G------RSG-RGLTEHCGVPVDKIDI 268 (442)
Q Consensus 225 ~~~Le~~l~~~~~~~~~----------------------------a~~~g~~-G------~~g-~g~~~~~~v~~~~~di 268 (442)
+++|++++++.....+. .|+.-++ . .+| .+..+++++.|+
T Consensus 186 ~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~d---- 261 (427)
T 3fq8_A 186 LEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPD---- 261 (427)
T ss_dssp HHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCS----
T ss_pred HHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCC----
Confidence 99999999864221111 1111111 0 122 233456777654
Q ss_pred EEEeccccccC--CCcEEEcCHHhHHHHHhhCCce-eccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhcc
Q 013461 269 VTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGY-VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSD 345 (442)
Q Consensus 269 ii~S~sK~lg~--~GG~v~g~~~~i~~l~~~~~~~-~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~ 345 (442)
+.||||++|. ++|++++++++++.+......+ ..+.+.+|++++++.++++.+++ +++.++++++++++++.|.+
T Consensus 262 -i~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-~~~~~~~~~~~~~~~~~l~~ 339 (427)
T 3fq8_A 262 -LTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PGTYEYLDQITKRLSDGLLA 339 (427)
T ss_dssp -EEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHH
T ss_pred -hhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHH
Confidence 4689999974 3589999999998876432111 12234589999999999998866 45888999999999888876
Q ss_pred C---CCceeecCCCCCEEEEEecCCCCC-----chhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCC
Q 013461 346 I---HGLSIASNPESPIVFLILEKSTGS-----MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAA 417 (442)
Q Consensus 346 ~---~g~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~ 417 (442)
+ .++.......+.++++.+...... ...+.....++.+.++ ++||++.++.. -|++++..
T Consensus 340 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Gi~v~~~~~-----------~r~~~~~~ 407 (427)
T 3fq8_A 340 IAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGML-EQGIYLAPSQF-----------EAGFTSLA 407 (427)
T ss_dssp HHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSSTT-----------SCEECCTT
T ss_pred HHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHH-HCCcEEecCCC-----------CCEEeeCc
Confidence 4 122221123567888887542111 0012233456777655 46999987543 26667788
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 013461 418 HSEADLVKACESLKRISAV 436 (442)
Q Consensus 418 ~t~eei~~~i~~l~~~~~~ 436 (442)
+|++|+++++++|++++++
T Consensus 408 ~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 408 HTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 33
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.95 E-value=9.8e-27 Score=230.60 Aligned_cols=309 Identities=19% Similarity=0.196 Sum_probs=219.7
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC-CCCCCC-CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA-NYLGLI-GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~-~~l~~~-~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g 168 (442)
.|.++++++|.++| .+|++||||+++ +.++++ .+|++.+++.+++++++.++. .+..+.+.++++++++++|
T Consensus 18 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~la~~~g 92 (392)
T 3ruy_A 18 LPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSR-----AFHSDQLGPWYEKVAKLTN 92 (392)
T ss_dssp CSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCT-----TSEETTHHHHHHHHHHHHT
T ss_pred CCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhcccccc-----ccCCHHHHHHHHHHHHhcC
Confidence 46778899999999 699999999765 233333 589999999999988654331 1356788999999999999
Q ss_pred CCcEEEEcchHHHHHhhhhhhccC----------CCEEEeCCCchH-HHHHHHHhcCC------------eEEEecCCCH
Q 013461 169 TPDSILYSYGLSTMFSAIPCFCKK----------GDLIVADEGVHW-GIQNGLYLSRS------------TVVYFKHNDM 225 (442)
Q Consensus 169 ~e~~i~~~sG~~a~~~ai~a~~~~----------gd~Vi~~~~~h~-s~~~~~~l~g~------------~v~~~~~~d~ 225 (442)
.++++++++|++|+..++.++..+ +|.|+++.+.|. ....+..+.+. .+..++++|+
T Consensus 93 ~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 172 (392)
T 3ruy_A 93 KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDL 172 (392)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTCH
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcccH
Confidence 999999999999999999877644 678887666664 44444444332 4677888899
Q ss_pred HHHHHHHHhhcccc-------------c----c--------cccccc--------cccCCCcc-ccccCCCCCceeEEEE
Q 013461 226 DSLRNTLERVTADN-------------K----R--------SNSFGV--------LGRSGRGL-TEHCGVPVDKIDIVTA 271 (442)
Q Consensus 226 ~~Le~~l~~~~~~~-------------~----~--------a~~~g~--------~G~~g~g~-~~~~~v~~~~~diii~ 271 (442)
++|++.++..+... . . .|+.-+ +|.+|.+. .+++++.+ |++
T Consensus 173 ~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~---d~~-- 247 (392)
T 3ruy_A 173 EALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTP---DMY-- 247 (392)
T ss_dssp HHHHHHCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCC---SEE--
T ss_pred HHHHHHhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCC---CEE--
Confidence 99998886322110 0 0 111111 12223322 24445543 444
Q ss_pred eccccccC---CCcEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccC--
Q 013461 272 AMGHALAT---EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI-- 346 (442)
Q Consensus 272 S~sK~lg~---~GG~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~-- 346 (442)
||||+++. .+||+++++++++.+........+ +.+++.++++.++++.++. ++++++++++++++.+.|+++
T Consensus 248 ~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~L~~~~~ 324 (392)
T 3ruy_A 248 ILGKALGGGVFPISCAAANRDILGVFEPGSHGSTF--GGNPLACAVSIAALEVLEE-EKLTERSLQLGEKLVGQLKEIDN 324 (392)
T ss_dssp EECGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSS--TTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHTTCCC
T ss_pred EEchhhhCChhhhEEEEECHHHHhhhccCCcCCCC--CCCHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhcC
Confidence 68999964 469999999998877654433333 5588888889999998766 568899999999999999886
Q ss_pred CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHH
Q 013461 347 HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKA 426 (442)
Q Consensus 347 ~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~ 426 (442)
+.+... .+.+.++++.++.. ..++.+. |.++||.+.++. +..+|++++..+|++|++++
T Consensus 325 ~~~~~~-~~~g~~~~~~~~~~----------~~~l~~~-l~~~gi~v~~~~---------~~~iRi~~~~~~~~~~i~~~ 383 (392)
T 3ruy_A 325 PMITEV-RGKGLFIGIELNEP----------ARPYCEQ-LKAAGLLCKETH---------ENVIRIAPPLVISEEDLEWA 383 (392)
T ss_dssp TTEEEE-EEETTEEEEEESSC----------SHHHHHH-HHTTTEECCCBT---------TTEEEECCCTTCCHHHHHHH
T ss_pred CCceEE-EeeeeEEEEEEcch----------HHHHHHH-HHHCCcEEecCC---------CCEEEEECCCCCCHHHHHHH
Confidence 223333 23577888877431 2356765 446799998753 24599999999999999999
Q ss_pred HHHHHHHH
Q 013461 427 CESLKRIS 434 (442)
Q Consensus 427 i~~l~~~~ 434 (442)
+++|++++
T Consensus 384 ~~~l~~~l 391 (392)
T 3ruy_A 384 FQKIKAVL 391 (392)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
No 34
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.95 E-value=3e-26 Score=230.06 Aligned_cols=318 Identities=18% Similarity=0.227 Sum_probs=216.4
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecCC---CCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASAN---YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~~---~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|.++++++|.++| .||++||||+++. .+|+ +||+|++|+.+++++... . ....+...++++++++++
T Consensus 35 ~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~-~------~~~~~~~~~la~~l~~~~ 106 (429)
T 4e77_A 35 IPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGH-NHPAIRQAVIEAVERGLS-F------GAPTEMEVKMAQLVTDLV 106 (429)
T ss_dssp CCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHTTCSC-C------SSCCHHHHHHHHHHHHHS
T ss_pred CCceEEEeecCEEEECCCCEEEECCCchhccccCC-CCHHHHHHHHHHHHhCcc-c------CCCCHHHHHHHHHHHhhC
Confidence 47789999999999 5999999997653 3444 489999999999987321 1 124578899999999998
Q ss_pred C-CCcEEEEcchHHHHHhhhhh---hccCCCEEEeCCCchHHHHHHHHhc-------------------CCeEEEecCCC
Q 013461 168 G-TPDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYLS-------------------RSTVVYFKHND 224 (442)
Q Consensus 168 g-~e~~i~~~sG~~a~~~ai~a---~~~~gd~Vi~~~~~h~s~~~~~~l~-------------------g~~v~~~~~~d 224 (442)
+ .++++++++|++|+..+++. +.+++++|+.+..+|+.+...+... ...+..++++|
T Consensus 107 ~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 186 (429)
T 4e77_A 107 PTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYND 186 (429)
T ss_dssp TTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCC
Confidence 4 67899999999999999974 4577778888899998765332111 12467788899
Q ss_pred HHHHHHHHHhhcccccc----------------------------ccccccc-c------cCC-CccccccCCCCCceeE
Q 013461 225 MDSLRNTLERVTADNKR----------------------------SNSFGVL-G------RSG-RGLTEHCGVPVDKIDI 268 (442)
Q Consensus 225 ~~~Le~~l~~~~~~~~~----------------------------a~~~g~~-G------~~g-~g~~~~~~v~~~~~di 268 (442)
+++|++++++..+..+. .|+.-++ . ++| .+..+++++.|+ +
T Consensus 187 ~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~~~~pd---i 263 (429)
T 4e77_A 187 LASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYHVIPD---L 263 (429)
T ss_dssp HHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHTTCCCS---E
T ss_pred HHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcchHHHhcCCCCC---e
Confidence 99999999864222111 1111110 0 112 334567777664 4
Q ss_pred EEEeccccccC--CCcEEEcCHHhHHHHHhhCCceec-cCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhcc
Q 013461 269 VTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVF-SASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSD 345 (442)
Q Consensus 269 ii~S~sK~lg~--~GG~v~g~~~~i~~l~~~~~~~~~-s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~ 345 (442)
.||||++|. ++|++++++++++.+...+..+.. +.+.+|+.++++.++++.+++ +++.++++++.+++++.|.+
T Consensus 264 --~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~ 340 (429)
T 4e77_A 264 --TCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ-VGVYETLTELTDSLATGLRH 340 (429)
T ss_dssp --EEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHH
T ss_pred --eeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHH
Confidence 589999974 458999999999887653322222 235689999999999998865 45888899999999888865
Q ss_pred C---CCceeecCCCCCEEEEEecCCCCCc------hhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecC
Q 013461 346 I---HGLSIASNPESPIVFLILEKSTGSM------KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA 416 (442)
Q Consensus 346 ~---~g~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~ 416 (442)
+ .++.......+.++++.+....... ..+.....++++.+++ +||++.++..+ ++| ++.
T Consensus 341 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~---------~~~--~~~ 408 (429)
T 4e77_A 341 AAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLE-EGVYLAPSAFE---------AGF--MSL 408 (429)
T ss_dssp HHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHH-TTEECCSSTTS---------CEE--CCT
T ss_pred HHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHH-CCeEEeecCCC---------CEE--Eec
Confidence 3 1332222235778888875431100 0122334577776555 59999876431 244 567
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 013461 417 AHSEADLVKACESLKRISA 435 (442)
Q Consensus 417 ~~t~eei~~~i~~l~~~~~ 435 (442)
.+|++|+++++++|+++++
T Consensus 409 ~~t~e~i~~~l~~l~~~l~ 427 (429)
T 4e77_A 409 AHSNEDIQKTVNAARRCFA 427 (429)
T ss_dssp TCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 7899999999999998864
No 35
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.95 E-value=6.4e-26 Score=225.62 Aligned_cols=318 Identities=16% Similarity=0.183 Sum_probs=225.1
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.+.++.+++|.++| .+|++||||+++ +++|+ ++|++.+++.++++++...+. ....+.+.++++++++++
T Consensus 21 ~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~la~~~ 94 (406)
T 4adb_A 21 APFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGH-AHPELREALNEQASKFWHTGN-----GYTNEPVLRLAKKLIDAT 94 (406)
T ss_dssp CSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCSCCCT-----TSCCHHHHHHHHHHHHHS
T ss_pred CCceEEeeccCEEEeCCCCEEEECCCchhhcccCC-CCHHHHHHHHHHHHhcccccC-----CcCCHHHHHHHHHHHhhC
Confidence 36778899999999 599999999887 88888 689999999999987432211 124577899999999999
Q ss_pred CCCcEEEEcchHHHHHhhhhhhcc-------CC-C-EEEeCCCchHHHHHHHHhcC------------CeEEEecCCCHH
Q 013461 168 GTPDSILYSYGLSTMFSAIPCFCK-------KG-D-LIVADEGVHWGIQNGLYLSR------------STVVYFKHNDMD 226 (442)
Q Consensus 168 g~e~~i~~~sG~~a~~~ai~a~~~-------~g-d-~Vi~~~~~h~s~~~~~~l~g------------~~v~~~~~~d~~ 226 (442)
|.++++++++|++|+..++.++.. +| | +|+.+..+|.....+..+.+ ..+..++++|++
T Consensus 95 ~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 174 (406)
T 4adb_A 95 FADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDIN 174 (406)
T ss_dssp SCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHH
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHH
Confidence 999999999999999999988754 44 5 45566667766666666554 467788888999
Q ss_pred HHHHHHHhhcccc------c-------c------------cccccc--------cccCCCcc-ccccCCCCCceeEEEEe
Q 013461 227 SLRNTLERVTADN------K-------R------------SNSFGV--------LGRSGRGL-TEHCGVPVDKIDIVTAA 272 (442)
Q Consensus 227 ~Le~~l~~~~~~~------~-------~------------a~~~g~--------~G~~g~g~-~~~~~v~~~~~diii~S 272 (442)
+|++.++..+... . . .|+.-+ +|.+|... .+.+++.+ |++ |
T Consensus 175 ~l~~~l~~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~---d~~--t 249 (406)
T 4adb_A 175 SASALIDDSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTP---DLL--T 249 (406)
T ss_dssp HHHTTCSTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCC---SEE--E
T ss_pred HHHHHhcCCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCC---CEE--E
Confidence 8888775322100 0 0 111111 12223222 23455543 454 6
Q ss_pred ccccccC--CCcEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCC-c
Q 013461 273 MGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHG-L 349 (442)
Q Consensus 273 ~sK~lg~--~GG~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g-~ 349 (442)
|||++|. .+||+++++++++.++.......+ +.+++.++++.++++.++. +++.++++++++++.+.|+++.. +
T Consensus 250 ~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~ 326 (406)
T 4adb_A 250 TAKALGGGFPVGALLATEECARVMTVGTHGTTY--GGNPLASAVAGKVLELINT-PEMLNGVKQRHDWFVERLNTINHRY 326 (406)
T ss_dssp ECGGGGTTSCCEEEEECHHHHHTCCTTSSCCSS--TTCHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred echhhcCCCCeEEEEEcHHHHhhhccCCcCCCC--CCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999973 259999999999877654333333 4588888889999988765 67889999999999999876511 1
Q ss_pred eee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHH
Q 013461 350 SIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKAC 427 (442)
Q Consensus 350 ~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i 427 (442)
... ....+.++++.+..... ....++++.++ ++||.+.+.. +..+|++++..+|++|+++++
T Consensus 327 ~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~l~-~~gi~v~~~~---------~~~iRi~~~~~~~~e~i~~~~ 390 (406)
T 4adb_A 327 GLFSEVRGLGLLIGCVLNADYA------GQAKQISQEAA-KAGVMVLIAG---------GNVVRFAPALNVSEEEVTTGL 390 (406)
T ss_dssp CCEEEEEEETTEEEEEECTTTT------TCHHHHHHHHH-HTTEECEESS---------TTEEEECCCTTCCHHHHHHHH
T ss_pred CCceEEEEEEEEEEEEEeCCcH------HHHHHHHHHHH-HCCcEEeecC---------CCeEEEECCCCCCHHHHHHHH
Confidence 111 12246788888754210 01236777655 4599998753 245999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 013461 428 ESLKRISAVVLR 439 (442)
Q Consensus 428 ~~l~~~~~~~~~ 439 (442)
++|+++++++.+
T Consensus 391 ~~l~~~l~~~~~ 402 (406)
T 4adb_A 391 DRFAAACEHFVS 402 (406)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 36
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.95 E-value=6e-26 Score=224.48 Aligned_cols=325 Identities=11% Similarity=0.020 Sum_probs=226.0
Q ss_pred CeeecCCCCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC----
Q 013461 94 PVLESAAGPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG---- 168 (442)
Q Consensus 94 ~~~~~~~g~~~~-~~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g---- 168 (442)
.+..+++|.++| .+|+++|||..++ ..++.+|++++++.+++.+...+++.+ ..++.+++++.+++.+|
T Consensus 11 ~~~~~~~g~~~~d~~g~~~i~~~~~~-~~~~~~~~v~~a~~~~~~~~~~~y~~~-----~~~l~~~la~~l~~~~g~~~~ 84 (391)
T 3dzz_A 11 HVPKRQGNSIKWGVLKEKELPMWIAE-MDFKIAPEIMASMEEKLKVAAFGYESV-----PAEYYKAVADWEEIEHRARPK 84 (391)
T ss_dssp SCCCCCTTBTTTTTCCTTCEECCSSC-CSSCCCHHHHHHHHHHHTTCCCCCBCC-----CHHHHHHHHHHHHHHHSCCCC
T ss_pred hhccCCCCccceeccCCCceeccccC-CCCCCCHHHHHHHHHHHhcCcCCCCCC-----CHHHHHHHHHHHHHHhCCCCC
Confidence 455678999999 5999999998775 466678999999999987632222111 35667777777777777
Q ss_pred CCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC--------CCHHHHHHHHHh-hcccc
Q 013461 169 TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRNTLER-VTADN 239 (442)
Q Consensus 169 ~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~--------~d~~~Le~~l~~-~~~~~ 239 (442)
.++++++++|++++..++.+++++||.|+++.++|.++...++..|.+++.++. .|+++|++.+++ .++..
T Consensus 85 ~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v 164 (391)
T 3dzz_A 85 EDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMM 164 (391)
T ss_dssp GGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEE
T ss_pred HHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEE
Confidence 356777788899999999999999999999999999999999999999998886 578899998863 22110
Q ss_pred cc------------------------ccccccc--------ccCCCccc--cccCCCCCceeEEEEeccccccCCC---c
Q 013461 240 KR------------------------SNSFGVL--------GRSGRGLT--EHCGVPVDKIDIVTAAMGHALATEG---G 282 (442)
Q Consensus 240 ~~------------------------a~~~g~~--------G~~g~g~~--~~~~v~~~~~diii~S~sK~lg~~G---G 282 (442)
.. .|+.-++ ...|.... ..++....+.++++.|+||++|+.| |
T Consensus 165 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G 244 (391)
T 3dzz_A 165 VFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAA 244 (391)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCE
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhhe
Confidence 00 1111111 01111111 1111111345699999999998666 9
Q ss_pred EEEcC-HHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHhhcc-CCCceeecCCCCCE
Q 013461 283 FCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSD-IHGLSIASNPESPI 359 (442)
Q Consensus 283 ~v~g~-~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~-~~~~~~~l~~~~~~l~~~L~~-~~g~~~~~~~~~~i 359 (442)
|++++ +++++.++.....+. ..+.+++.++++.++++..++ .++++++++++++++.+.|++ ++++++..+..+.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 323 (391)
T 3dzz_A 245 CAIIPNPDLRARAEESFFLAG-IGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYL 323 (391)
T ss_dssp EEECCSHHHHHHHHHHHHHHT-CSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSE
T ss_pred EEEECCHHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEE
Confidence 99997 888888765422111 123456666667777765322 356788889999999999988 78888875545556
Q ss_pred EEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 360 VFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
+++.+... + ....++.+.+++++||.+.++..+.... +..+|++++ ++++++++++++|+++++++
T Consensus 324 ~~~~~~~~-~------~~~~~~~~~l~~~~gi~v~~g~~~~~~~---~~~iRis~~--~~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 324 AWVDISAL-G------MNAEDFCKYLREKTGLIISAGNGYRGNG---HEFVRINLA--CPKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp EEEECGGG-C------SCHHHHHHHHHHHHCEECEESGGGCTTG---GGEEEEECC--SCHHHHHHHHHHHHHHHHTC
T ss_pred EEEehhhc-C------CCHHHHHHHHHHhCCEEEeCchhhCCCC---CCEEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 66776431 0 0123677765556699999876543210 245999998 69999999999999988653
No 37
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.95 E-value=4.7e-26 Score=230.02 Aligned_cols=319 Identities=14% Similarity=0.144 Sum_probs=221.4
Q ss_pred CCCeeecCCCCeEEE-CCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTII-SGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~~-~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|.++.+++|+++|. +|++||||+++ +++|+. +|+|++++.+++++++ . ++...+..+...++++++++++
T Consensus 32 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~-~~~v~~a~~~~~~~~~-~---~~~~~~~~~~~~~l~~~la~~~ 106 (449)
T 3a8u_X 32 DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHT-RKEIQEAVAKQLSTLD-Y---SPGFQYGHPLSFQLAEKITDLT 106 (449)
T ss_dssp SCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBS-CHHHHHHHHHHTTTCS-C---CCSSSCCCHHHHHHHHHHHTTS
T ss_pred CCceEEeeecCEEEECCCCEEEECCccHhhccCCCC-CHHHHHHHHHHHHhCC-C---ccccccCCHHHHHHHHHHHHhC
Confidence 467889999999995 99999999654 467776 8999999999998754 1 1211456788899999999999
Q ss_pred C--CCcEEEEcchHHHHHhhhhhhcc--------CCCEEE-eCCCchHHHHHHHHhcCC--------------eEEEec-
Q 013461 168 G--TPDSILYSYGLSTMFSAIPCFCK--------KGDLIV-ADEGVHWGIQNGLYLSRS--------------TVVYFK- 221 (442)
Q Consensus 168 g--~e~~i~~~sG~~a~~~ai~a~~~--------~gd~Vi-~~~~~h~s~~~~~~l~g~--------------~v~~~~- 221 (442)
+ .++++++++|++|+..+++++.. ++|.|+ .+..+|+.+..++.+.+. ..+.++
T Consensus 107 ~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~ 186 (449)
T 3a8u_X 107 PGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTL 186 (449)
T ss_dssp STTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCC
T ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCc
Confidence 5 46788999999999999987753 566555 577777777666666542 223222
Q ss_pred ---CC----C--------HHHHHHHHHhhc-ccccc--------------------------------------cc-ccc
Q 013461 222 ---HN----D--------MDSLRNTLERVT-ADNKR--------------------------------------SN-SFG 246 (442)
Q Consensus 222 ---~~----d--------~~~Le~~l~~~~-~~~~~--------------------------------------a~-~~g 246 (442)
++ | +++|++.+++.. +..+. .| ++|
T Consensus 187 ~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g 266 (449)
T 3a8u_X 187 LASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFG 266 (449)
T ss_dssp CGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred cccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcc
Confidence 11 5 888988887431 11000 23 333
Q ss_pred ccccCCCccccccCCCCCceeEEEEeccccccCC---CcEEEcCHHhHHHHHhhCC-------ceeccCCCcHHHHHHHH
Q 013461 247 VLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLSSS-------GYVFSASLPPYLASAAI 316 (442)
Q Consensus 247 ~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~---GG~v~g~~~~i~~l~~~~~-------~~~~s~s~~p~~aaaa~ 316 (442)
..|. .+..+++++.+ |++ ||||+++.+ .|++++++++++.+..... ...++.+.+|+.++++.
T Consensus 267 ~~g~--~~~~~~~~~~~---di~--s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~ 339 (449)
T 3a8u_X 267 RTGS--MFGADSFGVTP---DLM--CIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGL 339 (449)
T ss_dssp TTSS--SSHHHHHTCCC---SEE--EECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHH
T ss_pred ccCc--chhhhhcCCCC---CEE--EEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHH
Confidence 3221 12335566654 444 899999753 5888899999998875421 12234456899999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEe
Q 013461 317 TAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV 394 (442)
Q Consensus 317 aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~ 394 (442)
++++.+++. ++.++++++.+++++.|+++..++.. ..+.+.++++.+....... . ....++.+.+++ +||++.
T Consensus 340 aal~~~~~~-~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~--~-~~~~~~~~~l~~-~Gv~v~ 414 (449)
T 3a8u_X 340 AALCLLQKE-NLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDA--I-VRPFEAGMALWK-AGFYVR 414 (449)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBS--S-HHHHHHHHHHHH-HTEECE
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccc--c-ccHHHHHHHHHH-CCcEEe
Confidence 999988764 47889999999999999775323221 1235788898885421110 0 011246776555 599998
Q ss_pred eccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 395 TSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 395 ~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
++. ..+||+++..+|++|+++++++|+++++++
T Consensus 415 ~~g----------~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 415 FGG----------DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp EET----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred cCC----------CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 752 239999999999999999999999988764
No 38
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.91 E-value=2.1e-29 Score=253.68 Aligned_cols=316 Identities=16% Similarity=0.130 Sum_probs=222.1
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecCCC-CCCC-CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh-
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASANY-LGLI-GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL- 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~~~-l~~~-~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~- 167 (442)
.|.++++++|.++| +||++||||.++.+ +.++ +||+|++|+.+++++ +... ....+.+.+|+++|++++
T Consensus 82 ~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~-~~~~------~~~~~~~~~Lae~L~~~~p 154 (465)
T 2yky_A 82 FPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAV-GLNL------STQTENEALFAEAVCDRFP 154 (465)
Confidence 36788999999999 69999999987755 3344 589999999999987 3322 234677899999999999
Q ss_pred CCCcEEEEcchHHHHHhhhhhh---ccCCCEEEeCCCchHHHHHHHH---hcCC--eEEEecCCCHHHHHHHHHhhcccc
Q 013461 168 GTPDSILYSYGLSTMFSAIPCF---CKKGDLIVADEGVHWGIQNGLY---LSRS--TVVYFKHNDMDSLRNTLERVTADN 239 (442)
Q Consensus 168 g~e~~i~~~sG~~a~~~ai~a~---~~~gd~Vi~~~~~h~s~~~~~~---l~g~--~v~~~~~~d~~~Le~~l~~~~~~~ 239 (442)
+.+.+++++||++|++++++.. .++.++|.++..+|+.+..++. ..|. .++.+++||+++|++++++..+..
T Consensus 155 ~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~~d~~~l~~~l~~~~~~~ 234 (465)
T 2yky_A 155 SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVYNDVEGTADLLKRHGHDC 234 (465)
Confidence 6888999999999999999764 5667788889999987765541 1123 556788899999999887421111
Q ss_pred cc--------------------------------------cccccccccCCCccccccCCCCCceeEEEEeccccccC--
Q 013461 240 KR--------------------------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT-- 279 (442)
Q Consensus 240 ~~--------------------------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~-- 279 (442)
+. .+. +..|. .+..+++|+.| | +.||||++|+
T Consensus 235 aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~--~~a~~~~gv~p---D--i~t~sK~lg~G~ 306 (465)
T 2yky_A 235 AAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSG--GGAQEMLGISA---D--LTTLGKYIGGGM 306 (465)
Confidence 10 222 22222 23456677665 3 4479999975
Q ss_pred CCcEEEcCHHhHHHHHhh--CC-ceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCC-Ccee--ec
Q 013461 280 EGGFCTGSARVVDHQRLS--SS-GYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH-GLSI--AS 353 (442)
Q Consensus 280 ~GG~v~g~~~~i~~l~~~--~~-~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~-g~~~--~~ 353 (442)
+.||+++++++++.+... +. ....+.+.+|+++++++++|+.+++ +++.++++++++++++.|+++. ...+ ..
T Consensus 307 piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 385 (465)
T 2yky_A 307 SFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYT-RQAASDLSASGDRFRANLNRIAVENQAPLQF 385 (465)
Confidence 248999999999988761 21 1122335689999999999998876 3588999999999999997751 1222 12
Q ss_pred CCCCCEEEEEecC-CCCC----chhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHH
Q 013461 354 NPESPIVFLILEK-STGS----MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACE 428 (442)
Q Consensus 354 ~~~~~i~~~~~~~-~~~~----~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~ 428 (442)
...+.++++.+.. +... ...+.....++++.++ ++||++.++.+. . ++..+|++||+++++
T Consensus 386 ~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~GV~v~p~~~~----------~---~s~~~t~edid~~l~ 451 (465)
T 2yky_A 386 TGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHML-RKGIYLAPRGMY----------A---LSLEIADAGRDAFAE 451 (465)
Confidence 3467788887753 1000 0012223456777766 469999876431 1 556689999999999
Q ss_pred HHHHHHHHH
Q 013461 429 SLKRISAVV 437 (442)
Q Consensus 429 ~l~~~~~~~ 437 (442)
+|+++++++
T Consensus 452 ~l~~~l~~~ 460 (465)
T 2yky_A 452 ALADFIGEQ 460 (465)
Confidence 999988765
No 39
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.94 E-value=3.5e-26 Score=225.09 Aligned_cols=319 Identities=13% Similarity=0.053 Sum_probs=221.6
Q ss_pred ecCCCCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC----CCc
Q 013461 97 ESAAGPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG----TPD 171 (442)
Q Consensus 97 ~~~~g~~~~-~~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g----~e~ 171 (442)
.+++|.++| .+|+++|||++++ ..++.+|++++++.+++.+...++ .. .| .++.+.+.+.+.+.+| .++
T Consensus 10 ~~~~g~~~~d~~g~~~idl~~~~-~~~~~~~~v~~a~~~~~~~~~~~y---~~-~~-~~lr~~la~~~~~~~~~~~~~~~ 83 (377)
T 3fdb_A 10 LRARNTMKWTRYGQGVLPLWVAE-SDFSTCPAVLQAITDAVQREAFGY---QP-DG-SLLSQATAEFYADRYGYQARPEW 83 (377)
T ss_dssp HHHTCCHHHHSSCTTSEECCSSC-CCSCCCHHHHHHHHHHHHTTCCSS---CC-SS-CCHHHHHHHHHHHHHCCCCCGGG
T ss_pred hcCCCCceeeccCCCeeeecccC-CCCCCCHHHHHHHHHHHHcCCCCC---CC-CC-HHHHHHHHHHHHHHhCCCCCHHH
Confidence 468899999 5999999998875 456678999999999998621221 11 23 3444444444443333 357
Q ss_pred EEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC---CHHHHHHHHHhhcccccc-------
Q 013461 172 SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN---DMDSLRNTLERVTADNKR------- 241 (442)
Q Consensus 172 ~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~---d~~~Le~~l~~~~~~~~~------- 241 (442)
++++++|++++..++.+++++||.|+++.++|.++...++..|.+++.++.+ |+++|++.+++.+.....
T Consensus 84 i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~npt 163 (377)
T 3fdb_A 84 IFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGGINLHDVEKGFQAGARSILLCNPYNPL 163 (377)
T ss_dssp EEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTSCCHHHHHHHHHTTCCEEEEESSBTTT
T ss_pred EEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCCCCHHHHHHHhccCCCEEEEeCCCCCC
Confidence 8888899999999999999999999999999999999999999999999886 899999988764321100
Q ss_pred -----------------ccccccc--------ccCC-CccccccCCCCCceeEEEEeccccccCCC---cEEEc-CHHhH
Q 013461 242 -----------------SNSFGVL--------GRSG-RGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTG-SARVV 291 (442)
Q Consensus 242 -----------------a~~~g~~--------G~~g-~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g-~~~~i 291 (442)
.|+.-++ ..+| ........+...+.++++.||||++|+.| ||++. +++++
T Consensus 164 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~ 243 (377)
T 3fdb_A 164 GMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDA 243 (377)
T ss_dssp TBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHH
Confidence 1221111 1111 11111122211345799999999998665 87665 78898
Q ss_pred HHHHhhCCceeccCCCcHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHhhcc-CCCceeecCCCCCEEEEEecCCCC
Q 013461 292 DHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSD-IHGLSIASNPESPIVFLILEKSTG 369 (442)
Q Consensus 292 ~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~-~~~~~~~~l~~~~~~l~~~L~~-~~g~~~~~~~~~~i~~~~~~~~~~ 369 (442)
+.++..... .+.+.+++.++++.++++..+ ..++++++++++++++.+.|++ ++++++..+..+.++++.+.....
T Consensus 244 ~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (377)
T 3fdb_A 244 EHWQQLSPV--IKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTTI 321 (377)
T ss_dssp HHHHHSCHH--HHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSCC
T ss_pred HHHHHHHHh--hcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECcccCC
Confidence 888764322 234557788877778887533 2356788899999999999988 678888765455555777754211
Q ss_pred CchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 370 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 370 ~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
. .++++.+++++||.+.++..+... .+..+|++++. +++++++++++|++++++
T Consensus 322 ~--------~~~~~~l~~~~gi~v~~g~~~~~~---~~~~~Ris~~~--~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 322 E--------GSPSEFFIEKAKVAMNDGAWFGED---GTGFCRLNFAT--SREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp C--------SCHHHHHHHHHCEECEEGGGGCGG---GTTEEEEECCS--CHHHHHHHHHHHHHHHTT
T ss_pred C--------HHHHHHHHHhCCEEecCChhccCC---CCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence 0 135666666669999988754421 13569999984 899999999999988754
No 40
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.94 E-value=5e-26 Score=225.98 Aligned_cols=310 Identities=18% Similarity=0.226 Sum_probs=221.5
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|.++.+++|+++| .+|++||||+++ +++|+ .+|++++++.+++++++.++. . + ..+...++++++++++
T Consensus 22 ~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~~---~-~-~~~~~~~l~~~la~~~ 95 (397)
T 2ord_A 22 FPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGH-SHPRLVEAIKDQAEKLIHCSN---L-F-WNRPQMELAELLSKNT 95 (397)
T ss_dssp CSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCSCCCT---T-S-EEHHHHHHHHHHHHTT
T ss_pred CCceEEeeecCEEEECCCCEEEECCccccccccCC-CCHHHHHHHHHHHHhcccCcc---c-c-CCHHHHHHHHHHHHhc
Confidence 46788899999999 599999999877 88888 689999999999998654321 1 2 4678899999999999
Q ss_pred CCCcEEEEcchHHHHHhhhhhhcc------C--CCEEEeCCCchHHHHHHHHhcCCe------------EEEecCCCHHH
Q 013461 168 GTPDSILYSYGLSTMFSAIPCFCK------K--GDLIVADEGVHWGIQNGLYLSRST------------VVYFKHNDMDS 227 (442)
Q Consensus 168 g~e~~i~~~sG~~a~~~ai~a~~~------~--gd~Vi~~~~~h~s~~~~~~l~g~~------------v~~~~~~d~~~ 227 (442)
|.++++++++|++|+..++.++.. + +++|+.+..+|..+..++...|.+ ++.++++|+++
T Consensus 96 g~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~ 175 (397)
T 2ord_A 96 FGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVED 175 (397)
T ss_dssp TSCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCHHH
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCCCHHH
Confidence 999999999999999999988752 3 346667777788777777777776 78888899999
Q ss_pred HHHHHHhhcccc----------c-c------------------------cccccccccCCCcc-ccccCCCCCceeEEEE
Q 013461 228 LRNTLERVTADN----------K-R------------------------SNSFGVLGRSGRGL-TEHCGVPVDKIDIVTA 271 (442)
Q Consensus 228 Le~~l~~~~~~~----------~-~------------------------a~~~g~~G~~g~g~-~~~~~v~~~~~diii~ 271 (442)
|++.+++.+... . . +++ | ++.+|... .+.+++.+ |++
T Consensus 176 l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~~~~~~~~---d~~-- 248 (397)
T 2ord_A 176 LRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQC-G-MGRTGKLFAYQKYGVVP---DVL-- 248 (397)
T ss_dssp HHHHCCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSHHHHHTCCC---SEE--
T ss_pred HHHHhhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CccCccchhhhhhCCCC---Cee--
Confidence 998876422100 0 0 221 1 12222222 13344333 544
Q ss_pred eccccccC--CCcEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCC-C
Q 013461 272 AMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH-G 348 (442)
Q Consensus 272 S~sK~lg~--~GG~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~-g 348 (442)
||||++|. ..|+++++++++ .++..... .+.+.+++.++++.++++.+++ ++++++++++++++.+.|+++. +
T Consensus 249 s~sK~~~~G~r~G~~~~~~~~~-~l~~~~~~--~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~ 324 (397)
T 2ord_A 249 TTAKGLGGGVPIGAVIVNERAN-VLEPGDHG--TTFGGNPLACRAGVTVIKELTK-EGFLEEVEEKGNYLMKKLQEMKEE 324 (397)
T ss_dssp EECGGGGTTSCCEEEEECSTTC-CCCTTSSC--CSSTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccCCCcCeEEEEEchHhc-ccCCCCcC--CCCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999973 248888888876 44322122 2334588888888899988876 5588999999999999987641 2
Q ss_pred ceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHH
Q 013461 349 LSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKA 426 (442)
Q Consensus 349 ~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~ 426 (442)
+++. ..+.++++++.+.... + ..++.+.++ ++||.+.++. +..+|++++..+|++|++++
T Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~-----~---~~~l~~~l~-~~gi~v~~~~---------~~~iRis~~~~~~~e~i~~~ 386 (397)
T 2ord_A 325 YDVVADVRGMGLMIGIQFREEV-----S---NREVATKCF-ENKLLVVPAG---------NNTIRFLPPLTVEYGEIDLA 386 (397)
T ss_dssp CTTEEEEEEETTEEEEEECTTS-----C---HHHHHHHHH-HTTEECEEET---------TTEEEECCCTTCCHHHHHHH
T ss_pred CCceEEEEEEeEEEEEEECChH-----H---HHHHHHHHH-HCCCEEccCC---------CCEEEEECCcCCCHHHHHHH
Confidence 2211 1235678888874321 1 235777644 4699998763 24599999988999999999
Q ss_pred HHHHHHHHHH
Q 013461 427 CESLKRISAV 436 (442)
Q Consensus 427 i~~l~~~~~~ 436 (442)
+++|++++++
T Consensus 387 ~~~l~~~l~~ 396 (397)
T 2ord_A 387 VETLKKVLQG 396 (397)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 41
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.94 E-value=1.6e-25 Score=224.97 Aligned_cols=324 Identities=16% Similarity=0.148 Sum_probs=218.3
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC-C--CCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA-N--YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~-~--~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|.++.+++|+++| .+|++||||+++ + ++|+ +||+|++++.+++++++..+ ..+..+.+.++++++++++
T Consensus 25 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~la~~~ 98 (433)
T 1zod_A 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGH-CHPEIVSVIGEYAGKLDHLF-----SEMLSRPVVDLATRLANIT 98 (433)
T ss_dssp CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCC-----TTCCCHHHHHHHHHHHHHS
T ss_pred CCceEEEeecCEEEeCCCCEEEEcccchhccccCC-CCHHHHHHHHHHHHhCcccc-----cccCCHHHHHHHHHHHHhC
Confidence 36778889999999 599999999654 3 4565 58999999999998864321 1234678899999999999
Q ss_pred C--CCcEEEEcchHHHHHhhhhhhc---cCCCEEEeCCCchHHHHHHHHhc-------------CCeEEEec------CC
Q 013461 168 G--TPDSILYSYGLSTMFSAIPCFC---KKGDLIVADEGVHWGIQNGLYLS-------------RSTVVYFK------HN 223 (442)
Q Consensus 168 g--~e~~i~~~sG~~a~~~ai~a~~---~~gd~Vi~~~~~h~s~~~~~~l~-------------g~~v~~~~------~~ 223 (442)
+ .++++++++|++|+..+++++. +++++|+.+..+|+.+..++.++ +...+.++ ++
T Consensus 99 ~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (433)
T 1zod_A 99 PPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFE 178 (433)
T ss_dssp CTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCE
T ss_pred CCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccC
Confidence 7 4678888899999999997542 33345566677887776665543 22333222 33
Q ss_pred ---------CHHHHHHHHHhhc-ccccc--------------------------------------ccc-ccccccCCC-
Q 013461 224 ---------DMDSLRNTLERVT-ADNKR--------------------------------------SNS-FGVLGRSGR- 253 (442)
Q Consensus 224 ---------d~~~Le~~l~~~~-~~~~~--------------------------------------a~~-~g~~G~~g~- 253 (442)
|+++|++.+++.. +..+. .|+ +| .+|.
T Consensus 179 ~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g---~~g~~ 255 (433)
T 1zod_A 179 RNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVG---RTGTM 255 (433)
T ss_dssp ETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTT---TTSSS
T ss_pred CchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC---cCchH
Confidence 3788888887421 11100 222 22 2232
Q ss_pred ccccccCCCCCceeEEEEeccccccC--CCcEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHH
Q 013461 254 GLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITK 331 (442)
Q Consensus 254 g~~~~~~v~~~~~diii~S~sK~lg~--~GG~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~ 331 (442)
+..+++++.+ |+ .||||++|+ +.||+++++++++.+.........+.+.+|+.++++.++++.+++. ++.++
T Consensus 256 ~~~~~~~~~~---di--~s~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~-~~~~~ 329 (433)
T 1zod_A 256 FACQRDGVTP---DI--LTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRD-GLVAR 329 (433)
T ss_dssp STHHHHTCCC---SE--EEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHT-THHHH
T ss_pred hHHhhcCCCC---CE--EEecccccCCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhC-CHHHH
Confidence 2234556554 34 489999975 2399999999999887632111133455899999999999988764 47888
Q ss_pred HHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCC
Q 013461 332 LKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLP 407 (442)
Q Consensus 332 l~~~~~~l~~~L~~~----~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~ 407 (442)
++++++++++.|+++ +.+... .+.+.++++.+.........+.....++.+.++ ++||++.++..+. .+
T Consensus 330 ~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~-----~~ 402 (433)
T 1zod_A 330 ANVMGDRLRRGLLDLMERFDCIGDV-RGRGLLLGVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIVQLPG-----MG 402 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEECCTT-----SC
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccccCCChHHHHHHHHHHH-HCCCeEeccCCCC-----CC
Confidence 999999999988764 323222 245778888774311000000112346777655 5699998875421 12
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 408 VGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 408 ~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
..+||+++..+|++|+++++++|+++++++
T Consensus 403 ~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 403 GVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 459999999999999999999999988765
No 42
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.94 E-value=5.5e-25 Score=216.94 Aligned_cols=322 Identities=10% Similarity=0.023 Sum_probs=215.8
Q ss_pred CeeecCCCCeEEE--CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC---
Q 013461 94 PVLESAAGPHTII--SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--- 168 (442)
Q Consensus 94 ~~~~~~~g~~~~~--~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g--- 168 (442)
.+..+++|.++|. +|+++|||++++ .++..+|++++++.+++.+...+++.+ ..++.+++++.+++++|
T Consensus 7 ~~~~~~~g~~~~d~~~~~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~~y~~~-----~~~~~~~l~~~l~~~~g~~~ 80 (383)
T 3kax_A 7 TVNRRGTHSIKWDTYKNEELIHAWIAD-MDFEVPQPIQTALKKRIEHPIFGYTLP-----PENIGDIICNWTKKQYNWDI 80 (383)
T ss_dssp ------------CCCSSSCCEECCCSS-CSSCCCHHHHHHHHHHHHSCCCCCCCC-----CTTHHHHHHHHHHHHHCCCC
T ss_pred eeeccCCCceeeeccCCCCeeeccccc-CCCCCCHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHHHHHHHHhCCCC
Confidence 4556788999994 568999998876 567788999999999998622222111 46788888899988887
Q ss_pred -CCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC--------CCHHHHHHHHHhhcccc
Q 013461 169 -TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRNTLERVTADN 239 (442)
Q Consensus 169 -~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~--------~d~~~Le~~l~~~~~~~ 239 (442)
.++++++++|++++..++.+++++||.|+++.++|.++...++..|.+++.++. .|+++|++.+...+...
T Consensus 81 ~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v 160 (383)
T 3kax_A 81 QKEWIVFSAGIVPALSTSIQAFTKENESVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLM 160 (383)
T ss_dssp CGGGEEEESCHHHHHHHHHHHHCCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTTTCCEE
T ss_pred ChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHhCcCCeEE
Confidence 356788888999999999999999999999999999999999999999998875 37888988884322110
Q ss_pred cc------------------------ccccccc--------ccCCCccccccCCCC--CceeEEEEeccccccCCC---c
Q 013461 240 KR------------------------SNSFGVL--------GRSGRGLTEHCGVPV--DKIDIVTAAMGHALATEG---G 282 (442)
Q Consensus 240 ~~------------------------a~~~g~~--------G~~g~g~~~~~~v~~--~~~diii~S~sK~lg~~G---G 282 (442)
.. .|+.-++ +.+|........+.+ .+.++++.||||++|+.| |
T Consensus 161 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 240 (383)
T 3kax_A 161 LLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQAS 240 (383)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCE
T ss_pred EEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhccCcchhhe
Confidence 00 1111111 111111111112221 256799999999998665 9
Q ss_pred EEEc-CHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHhhcc-CCCceeecCCCCCE
Q 013461 283 FCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSD-IHGLSIASNPESPI 359 (442)
Q Consensus 283 ~v~g-~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~-~~~~~~~l~~~~~~l~~~L~~-~~g~~~~~~~~~~i 359 (442)
|+++ ++++++.++.....+.+ .+.+++.++++.++++..++ .++++++++++++++.+.|++ ++++++..+..+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 319 (383)
T 3kax_A 241 IIIIPNEKLRQAFTSIQYRQGF-HGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKPEGSFL 319 (383)
T ss_dssp EEECCCHHHHHHHHHHHHHTTC-CCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCSBSSE
T ss_pred EEEeCCHHHHHHHHHHHhhccc-CCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCceEE
Confidence 9988 68888887654322222 24577777777777764322 345778889999999999987 67888775544555
Q ss_pred EEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 360 VFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
.++.+... + ....++++.+++++||.+.++..+... .+..+|++++ .+++++++++++|++++
T Consensus 320 ~~~~~~~~-~------~~~~~~~~~l~~~~gi~v~~g~~~~~~---~~~~iRi~~~--~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 320 LWIDCSAL-N------LSQDERTKLLEEKGKIIVEPGEKYGLG---GEEHIGINIG--CPRSVLEEILNRLRHTF 382 (383)
T ss_dssp EEEECGGG-C------CCHHHHHHHHHHTSCEECEESGGGCTT---CTTEEEEECS--SCHHHHHHHHHHHHHHH
T ss_pred EEEEcccc-C------CCHHHHHHHHHhhCCEEeECchhhcCC---CCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 56776431 0 013367776555679999987654321 1356999998 48999999999998875
No 43
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.94 E-value=1.5e-26 Score=235.02 Aligned_cols=315 Identities=14% Similarity=0.150 Sum_probs=208.0
Q ss_pred CCeeecCCCCeEE-ECCeeEEEeecCCC-CCCC-CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh--
Q 013461 93 PPVLESAAGPHTI-ISGKEVVNFASANY-LGLI-GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-- 167 (442)
Q Consensus 93 ~~~~~~~~g~~~~-~~G~~~id~~s~~~-l~~~-~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~-- 167 (442)
+.++++++|.++| +||++||||+++.+ ++++ +||+|++|+.+++.+++..++...+.....++.++++++|++++
T Consensus 46 ~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~ 125 (472)
T 1ohv_A 46 FCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPK 125 (472)
T ss_dssp CBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCT
T ss_pred CceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCC
Confidence 5678999999999 69999999977644 3344 58999999999876533222110011123456666666677776
Q ss_pred CCCcEEEEcchHHHHHhhhhhhc---------------------------c--CCCEEEeCCCchHHHHHHHHhcCCeE-
Q 013461 168 GTPDSILYSYGLSTMFSAIPCFC---------------------------K--KGDLIVADEGVHWGIQNGLYLSRSTV- 217 (442)
Q Consensus 168 g~e~~i~~~sG~~a~~~ai~a~~---------------------------~--~gd~Vi~~~~~h~s~~~~~~l~g~~v- 217 (442)
+.+++++++||++|++.+++++. + +.++|.++..+|+.+..++.+++...
T Consensus 126 ~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~ 205 (472)
T 1ohv_A 126 GMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAI 205 (472)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHH
T ss_pred CcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccc
Confidence 46789999999999999998763 1 23567788899998888877766421
Q ss_pred ------------EEec-----------CC------CHHHHHHHHHhhcc---cccc------------------------
Q 013461 218 ------------VYFK-----------HN------DMDSLRNTLERVTA---DNKR------------------------ 241 (442)
Q Consensus 218 ------------~~~~-----------~~------d~~~Le~~l~~~~~---~~~~------------------------ 241 (442)
+.++ +| |+++|++++++... ..+.
T Consensus 206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~ 285 (472)
T 1ohv_A 206 HKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLR 285 (472)
T ss_dssp HHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHH
T ss_pred cccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHH
Confidence 1221 22 57788888875311 1111
Q ss_pred ----cccccc--------cccCCCc-cccccCCCCCceeEEEEeccccccCCCcEEEcCHHhHHHHHhhCCceeccC-CC
Q 013461 242 ----SNSFGV--------LGRSGRG-LTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSA-SL 307 (442)
Q Consensus 242 ----a~~~g~--------~G~~g~g-~~~~~~v~~~~~diii~S~sK~lg~~GG~v~g~~~~i~~l~~~~~~~~~s~-s~ 307 (442)
.|++-+ +|++|.+ ..+++|+. ...|+ .||||++ +.|||++ ++++. .+ .....+++ +.
T Consensus 286 ~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~-~~~Di--~t~sK~~-l~GG~~~-~~~~~-~~---~~~~~~~T~~~ 356 (472)
T 1ohv_A 286 DISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLD-DPADV--MTFSKKM-MTGGFFH-KEEFR-PN---APYRIFNTWLG 356 (472)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCS-SCCSE--EEECGGG-SSEEEEE-CGGGS-CS---SSSSSCCSSSS
T ss_pred HHHHHhCCEEEEeCcccCCCCCCCchhccccCCC-CCCCE--EEEcccc-ccCCccC-chhhc-cc---ccccccCccCc
Confidence 111100 3444442 45667764 12355 4799994 3378887 66652 11 11222222 46
Q ss_pred cHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccC----CC-ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHH
Q 013461 308 PPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI----HG-LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIA 382 (442)
Q Consensus 308 ~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~----~g-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~ 382 (442)
+|+.++++.++|+.+++. ++.+++++++++|++.|+++ ++ +... .+.+.++.+.+.. .....+++
T Consensus 357 ~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~-~~~g~~~~~~~~~--------~~~~~~~~ 426 (472)
T 1ohv_A 357 DPSKNLLLAEVINIIKRE-DLLSNAAHAGKVLLTGLLDLQARYPQFISRV-RGRGTFCSFDTPD--------ESIRNKLI 426 (472)
T ss_dssp CHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHHCTTTCEEE-EEETTEEEEECSS--------HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHhhCCCcEEee-cCCceEEEEEeCC--------hhHHHHHH
Confidence 899999999999988763 47899999999999998764 22 3222 2357788876632 12345678
Q ss_pred HHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 383 DWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 383 ~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
+.+++ +||++.+.. +..||++++..+|++||++++++|++++++
T Consensus 427 ~~l~~-~Gv~~~~~g---------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 427 SIARN-KGVMLGGCG---------DKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp HHHHH-TTEECEEET---------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-CCeEEecCC---------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 77665 699998742 134999999999999999999999998764
No 44
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.94 E-value=9.6e-25 Score=220.67 Aligned_cols=318 Identities=18% Similarity=0.228 Sum_probs=208.9
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|.++++++|.++| .+|++||||+++ +++|+ .||+|++++.+++++ +..+ .+..+...++++.+++++
T Consensus 39 ~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~-~~~~v~~a~~~~~~~-~~~~------~~~~~~~~~la~~l~~~~ 110 (453)
T 2cy8_A 39 HGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGH-GHPRVNAAIAEALSH-GVQY------AASHPLEVRWAERIVAAF 110 (453)
T ss_dssp CCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCB-TCHHHHHHHHHHHTT-TCSS------CSSCHHHHHHHHHHHHHC
T ss_pred CCceEEEeecCEEEECCCCEEEECcccHhhcccCC-CCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHhhC
Confidence 36778899999999 599999999877 66777 689999999999977 3322 124677788888888877
Q ss_pred -CCCcEEEEcchHHHHHhhhhh---hccCCCEEEeCCCchHHHHHHHHh----------cCC------eEEEecCCCHHH
Q 013461 168 -GTPDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYL----------SRS------TVVYFKHNDMDS 227 (442)
Q Consensus 168 -g~e~~i~~~sG~~a~~~ai~a---~~~~gd~Vi~~~~~h~s~~~~~~l----------~g~------~v~~~~~~d~~~ 227 (442)
+.++++++++|++|+..++++ +.+++++|+++..+|+.....+.. .+. .++.++++|+++
T Consensus 111 ~~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~ 190 (453)
T 2cy8_A 111 PSIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEG 190 (453)
T ss_dssp TTCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC----------------------------CGGGEEEECTTCHHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCCCHHH
Confidence 577889999999999999987 788888888887777544322211 122 466778899999
Q ss_pred HHHHHHhhcccccc----------------------------ccccccc-c------cCC-CccccccCCCCCceeEEEE
Q 013461 228 LRNTLERVTADNKR----------------------------SNSFGVL-G------RSG-RGLTEHCGVPVDKIDIVTA 271 (442)
Q Consensus 228 Le~~l~~~~~~~~~----------------------------a~~~g~~-G------~~g-~g~~~~~~v~~~~~diii~ 271 (442)
|++.+++..+..+. .|++-++ . ..| .+..+++++.| |+ .
T Consensus 191 le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~---di--~ 265 (453)
T 2cy8_A 191 MREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALLDVQP---DL--T 265 (453)
T ss_dssp HHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTTHHHHHHTCCC---SE--E
T ss_pred HHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCchhhhHHhCCCC---cE--E
Confidence 99998753111110 1111111 0 112 22345566655 44 4
Q ss_pred eccccccC--CCcEEEcCHHhHHHHHhh--CCcee-ccCCCcHHHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHhhcc
Q 013461 272 AMGHALAT--EGGFCTGSARVVDHQRLS--SSGYV-FSASLPPYLASAAITAIDV-LEENPDLITKLKKNTAILRTGLSD 345 (442)
Q Consensus 272 S~sK~lg~--~GG~v~g~~~~i~~l~~~--~~~~~-~s~s~~p~~aaaa~aal~~-l~~~~~~~~~l~~~~~~l~~~L~~ 345 (442)
||||++|. ++|++++++++++.+... ...+. .+.+.+|+.++++.++++. + . +++.++++++++++++.|++
T Consensus 266 s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~-~~~~~~~~~~~~~l~~~L~~ 343 (453)
T 2cy8_A 266 CLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-E-DDVCAKINDLGQFAREAMNH 343 (453)
T ss_dssp EEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-H-TTHHHHHHHHHHHHHHHHHH
T ss_pred EEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-h-hhHHHHHHHHHHHHHHHHHH
Confidence 89999974 569999999998876541 11111 2335689999999999997 6 4 34788999999999998876
Q ss_pred CC---CceeecCCCCCEEEEEecC-----CC------CCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceE
Q 013461 346 IH---GLSIASNPESPIVFLILEK-----ST------GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIR 411 (442)
Q Consensus 346 ~~---g~~~~~~~~~~i~~~~~~~-----~~------~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iR 411 (442)
+. ++.....+.+.++++.+.. .. .....+.....++.+.+++ +||++.+. ..+|
T Consensus 344 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gv~v~~~-----------~~~~ 411 (453)
T 2cy8_A 344 LFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALIL-EGVDIGGR-----------GSVF 411 (453)
T ss_dssp HHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH-TTEECBTT-----------TEEE
T ss_pred HHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHH-CCeEEeCC-----------CCEE
Confidence 41 3322123467899998853 10 0000011234567776554 69998431 1244
Q ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHh
Q 013461 412 LFVSAAHSEADLVKACESLKRISAVVL 438 (442)
Q Consensus 412 i~~~~~~t~eei~~~i~~l~~~~~~~~ 438 (442)
++..+|++|+++++++|+++++++.
T Consensus 412 --l~~~~t~~~i~~~l~~l~~~l~~~~ 436 (453)
T 2cy8_A 412 --LSAQHEREHVEHLVTTFDRVLDRLA 436 (453)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred --eeccCCHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999988764
No 45
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.94 E-value=6.1e-25 Score=219.97 Aligned_cols=324 Identities=11% Similarity=0.050 Sum_probs=226.7
Q ss_pred CCeeecCCCCeEEE-C--CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC-
Q 013461 93 PPVLESAAGPHTII-S--GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG- 168 (442)
Q Consensus 93 ~~~~~~~~g~~~~~-~--G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g- 168 (442)
+.+..+++|+++|. + |+++|||..++ ..+..+|+|++++.+++++...+++. ...++.+++++.+++.+|
T Consensus 42 ~~~~~~g~g~~~~d~~~~g~~~i~~~~~~-~~~~~~~~v~~a~~~~~~~~~~~y~~-----~~~~l~~~l~~~l~~~~g~ 115 (421)
T 3l8a_A 42 TRPDRLNQFTYKWKTSENNPELLQMWVAD-MDFLPVPEIKEAIINYGREHIFGYNY-----FNDDLYQAVIDWERKEHDY 115 (421)
T ss_dssp CCCCCTTTTBTTTGGGTTCTTCEECCSSC-CCSCCCHHHHHHHHHHHHHCCSSCBC-----CCHHHHHHHHHHHHHHHCC
T ss_pred cccccCCCCCccccccCCCCCeeecccCC-CCCCCCHHHHHHHHHHHhcCCcCCCC-----CCHHHHHHHHHHHHHHhCC
Confidence 34556789999994 6 89999997765 46667899999999999862222211 125677788888888777
Q ss_pred ---CCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC--------CHHHHHHHHHh-hc
Q 013461 169 ---TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN--------DMDSLRNTLER-VT 236 (442)
Q Consensus 169 ---~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~--------d~~~Le~~l~~-~~ 236 (442)
.++++++++|++|+..++.+++++||.|++..++|.++...+...|.+++.++.+ |+++|++.+++ .+
T Consensus 116 ~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~ 195 (421)
T 3l8a_A 116 AVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNV 195 (421)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTE
T ss_pred CCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCC
Confidence 3467777888899999999999999999999999999999999999998887753 88999998873 22
Q ss_pred ccccc------------------------ccccccc--------ccCCCccccccCCCC--CceeEEEEeccccccCCC-
Q 013461 237 ADNKR------------------------SNSFGVL--------GRSGRGLTEHCGVPV--DKIDIVTAAMGHALATEG- 281 (442)
Q Consensus 237 ~~~~~------------------------a~~~g~~--------G~~g~g~~~~~~v~~--~~~diii~S~sK~lg~~G- 281 (442)
..... .|++-++ +.+|........+.+ .++++++.|+||++|+.|
T Consensus 196 ~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 275 (421)
T 3l8a_A 196 KIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGT 275 (421)
T ss_dssp EEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGG
T ss_pred eEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchh
Confidence 11000 1111111 112222222222322 356799999999998655
Q ss_pred --cEEEcC-HHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHhhccCCCceeecCCCC
Q 013461 282 --GFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPES 357 (442)
Q Consensus 282 --G~v~g~-~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~ 357 (442)
|+++++ +++++.+......+. ..+.+++.++++.++++..++ .++++++++++.+++.+.|++.+++++..+..+
T Consensus 276 ~~G~~~~~~~~l~~~~~~~~~~~~-~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~ 354 (421)
T 3l8a_A 276 KNSFAIIQNESLRRKFQYRQLANN-QHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGT 354 (421)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTT-CSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBS
T ss_pred heEeEEcCCHHHHHHHHHHHHhcc-cCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCCee
Confidence 999988 888888765432222 224578888888888875432 356778889999999999987678888765455
Q ss_pred CEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHH
Q 013461 358 PIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 435 (442)
Q Consensus 358 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~ 435 (442)
.+.++.+..... + ..++.+.+++++||++.++..+... .+..+||+++ +++++|++++++|+++++
T Consensus 355 ~~~~v~~~~~~~----~---~~~l~~~l~~~~gi~v~~g~~f~~~---~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 355 YLVWLDFSAYAI----A---QPQLSEKLQNEAKVVLNDGAHFGKE---GKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp SEEEEECGGGTC----C---TTHHHHHHHHTTCEECEEGGGGCGG---GTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred EEEEEeccccCC----C---HHHHHHHHHHhCCEEEECchhhCCC---CCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 556677743100 0 1256776666679999987654311 0245999998 599999999999998764
No 46
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.94 E-value=4.7e-27 Score=251.79 Aligned_cols=322 Identities=14% Similarity=0.062 Sum_probs=216.2
Q ss_pred CCCeeecCCCC--eEEE-CCe----eEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHH
Q 013461 92 EPPVLESAAGP--HTII-SGK----EVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEA 161 (442)
Q Consensus 92 ~~~~~~~~~g~--~~~~-~G~----~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~ 161 (442)
.|.+|++++|. |+|. ||+ +|||+.|+ +.+|++.||+|++|+.+++++++... ....+.+...+|++
T Consensus 356 ~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~----~~~~~~~~~~~Lae 431 (831)
T 4a0g_A 356 TVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVM----FPENVYEPALKCAE 431 (831)
T ss_dssp GCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCC----CTTEECHHHHHHHH
T ss_pred CCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhccccc----ccccCCHHHHHHHH
Confidence 36788999885 7884 898 99999653 44555438999999999999987542 11235788899999
Q ss_pred HHHhhhC---CCcEEEEcchHHHHHhhhhhhc------------------cCCCEEEeCCCchHHHHHHHHhcCCeE---
Q 013461 162 RIAKFLG---TPDSILYSYGLSTMFSAIPCFC------------------KKGDLIVADEGVHWGIQNGLYLSRSTV--- 217 (442)
Q Consensus 162 ~lA~~~g---~e~~i~~~sG~~a~~~ai~a~~------------------~~gd~Vi~~~~~h~s~~~~~~l~g~~v--- 217 (442)
+|+++++ .+++++++||++||+.|++... +|.++|..+..+|+.+..++.+++...
T Consensus 432 ~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~ 511 (831)
T 4a0g_A 432 LLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTG 511 (831)
T ss_dssp HHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGS
T ss_pred HHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCcccccc
Confidence 9999997 5689999999999999997641 244688899999999999998876310
Q ss_pred ---------------------------EEec------------CCCH------------------HHHHHHHHhh-----
Q 013461 218 ---------------------------VYFK------------HNDM------------------DSLRNTLERV----- 235 (442)
Q Consensus 218 ---------------------------~~~~------------~~d~------------------~~Le~~l~~~----- 235 (442)
+.+| ++|. ++|++.+++.
T Consensus 512 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~ 591 (831)
T 4a0g_A 512 FLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQ 591 (831)
T ss_dssp TTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC--------
T ss_pred ccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcC
Confidence 1112 2332 4566666531
Q ss_pred cccccc----------------------------------------cccccccccCCCccccccCCCCCceeEEEEeccc
Q 013461 236 TADNKR----------------------------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGH 275 (442)
Q Consensus 236 ~~~~~~----------------------------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK 275 (442)
...... .++||++|+ .+.++++|+.|| | .||+|
T Consensus 592 ~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~--~fa~e~~gv~PD---i--itlsK 664 (831)
T 4a0g_A 592 SAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV--ETTTELLGCKPD---I--ACFAK 664 (831)
T ss_dssp -CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB--SSTHHHHSSCCS---E--EEECG
T ss_pred CCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCC--chhhHhcCCCCc---E--EEEec
Confidence 111100 455666654 235688999875 4 47999
Q ss_pred cccCC---CcEEEcCHHhHHHHHhhC----CceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--------HH
Q 013461 276 ALATE---GGFCTGSARVVDHQRLSS----SGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAI--------LR 340 (442)
Q Consensus 276 ~lg~~---GG~v~g~~~~i~~l~~~~----~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~--------l~ 340 (442)
++|.+ -|++++++++++.+.... ..+.++.+.+|++|++++++|+++++++ +.++++++.++ +.
T Consensus 665 ~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~-l~~~~~~~~~~l~~~l~~~l~ 743 (831)
T 4a0g_A 665 LLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPE-TNHNITSQGKTLRELWDEELV 743 (831)
T ss_dssp GGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTT-TCTTBCTTSSBBCCCSCHHHH
T ss_pred ccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99742 278999999999876432 1133455669999999999999987533 44444333332 33
Q ss_pred HhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCH
Q 013461 341 TGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSE 420 (442)
Q Consensus 341 ~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~ 420 (442)
+.+.+.+.+... ...+.++.+.+..+......+.....++.+.++ ++||++.+.. +.||++++..+|+
T Consensus 744 ~~l~~~~~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gv~v~p~g----------~~lrl~pp~~~t~ 811 (831)
T 4a0g_A 744 QQISSHSAVQRV-VVIGTLFALELKADASNSGYASLYAKSLLIMLR-EDGIFTRPLG----------NVIYLMCGPCTSP 811 (831)
T ss_dssp HHHHHSTTEEEE-EEETTEEEEEEC---------CHHHHHHHHHHH-HTTEECCCBT----------TEEEEECCTTCCH
T ss_pred HHHhhCCCceeE-eecccEEEEEEecCccccccchHHHHHHHHHHH-HCCcEEEecC----------CEEEEECCCCCCH
Confidence 344444443322 135678888875321111111123556777655 5699998642 3499999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013461 421 ADLVKACESLKRISAVV 437 (442)
Q Consensus 421 eei~~~i~~l~~~~~~~ 437 (442)
+||++++++|+++++++
T Consensus 812 e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 812 EICRRLLTKLYKRLGEF 828 (831)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887643
No 47
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.94 E-value=1.3e-24 Score=212.03 Aligned_cols=299 Identities=14% Similarity=0.084 Sum_probs=216.1
Q ss_pred CCCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCC--CcEEEEc
Q 013461 100 AGPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--PDSILYS 176 (442)
Q Consensus 100 ~g~~~~-~~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~--e~~i~~~ 176 (442)
+|.+++ .+|+++|||+++. ..++.+|++++++.+++.+. .. | ......++++++|+++|. +++++++
T Consensus 6 ~~~~~~~~~~~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~-~~-------y-~~~~~~~l~~~la~~~~~~~~~i~~~~ 75 (354)
T 3ly1_A 6 ESAAFTAPSTDNPIRINFNE-NPLGMSPKAQAAARDAVVKA-NR-------Y-AKNEILMLGNKLAAHHQVEAPSILLTA 75 (354)
T ss_dssp ---CCCCCCSSSCEECSSCC-CSSCCCHHHHHHHHHTGGGT-TS-------C-CHHHHHHHHHHHHHHTTSCGGGEEEES
T ss_pred ccccccCCCCCceEEccCCC-CCCCCCHHHHHHHHHHHhhC-cC-------C-CCCchHHHHHHHHHHhCCChHHEEEeC
Confidence 344455 5889999998875 45567899999999988752 11 1 134568999999999994 5778888
Q ss_pred chHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC-----CHHHHHHHHHh--hcccccc--------
Q 013461 177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLER--VTADNKR-------- 241 (442)
Q Consensus 177 sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-----d~~~Le~~l~~--~~~~~~~-------- 241 (442)
+|++++..++.+++++||.|+++.++|.++...++..|.+++.++.+ |+++|++.+++ .++....
T Consensus 76 g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG 155 (354)
T 3ly1_A 76 GSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTG 155 (354)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTC
T ss_pred ChHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcC
Confidence 88999999999999999999999999999999999999999999987 89999998873 2211000
Q ss_pred -------------c--ccccccccC--------CC--ccccccCCCCC-ceeEEEEeccccccCCC---cEEEcCHHhHH
Q 013461 242 -------------S--NSFGVLGRS--------GR--GLTEHCGVPVD-KIDIVTAAMGHALATEG---GFCTGSARVVD 292 (442)
Q Consensus 242 -------------a--~~~g~~G~~--------g~--g~~~~~~v~~~-~~diii~S~sK~lg~~G---G~v~g~~~~i~ 292 (442)
. |+.-++-+. +. ...... +.. +.+++++||||++|+.| ||+++++++++
T Consensus 156 ~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~ 233 (354)
T 3ly1_A 156 TITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMI--TQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIA 233 (354)
T ss_dssp CCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHH--HTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHH
T ss_pred CCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHh--hhcCCCEEEEeeChhhccChhhhheeeecCHHHHH
Confidence 1 221111110 10 111111 112 56799999999998665 99999999999
Q ss_pred HHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCch
Q 013461 293 HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMK 372 (442)
Q Consensus 293 ~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 372 (442)
.++..... .+.+++.++++.++++..+..++.+++++++++++.+.|.+. |+++. ++.++++++.++.
T Consensus 234 ~~~~~~~~----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~-~~~~~~~~~~~~~------ 301 (354)
T 3ly1_A 234 LMGRYVAG----EKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL-KLPYL-PSEGNFVFHQLVV------ 301 (354)
T ss_dssp HHGGGTTC----SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECSS------
T ss_pred HHHHhcCC----CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCCceEEEEECCC------
Confidence 98876544 345777777777777654434567888999999999999887 77766 3567888887742
Q ss_pred hhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 373 NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 373 ~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
+ ..++.+. |.++||.+. +.++. .+..+||+++ |++|+++++++|++++++
T Consensus 302 -~---~~~~~~~-l~~~gi~v~-g~~~~-----~~~~iRis~~---~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 302 -P---LKDYQTH-MADAGVLIG-RAFPP-----ADNWCRISLG---TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp -C---HHHHHHH-HHHTTEECC-CCCTT-----CTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred -C---HHHHHHH-HHHCCEEEe-ecCCC-----CCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence 1 2356765 445699988 54332 1356999986 899999999999988753
No 48
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.93 E-value=1.9e-24 Score=216.37 Aligned_cols=305 Identities=14% Similarity=0.176 Sum_probs=208.5
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecCC---CCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASAN---YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~~---~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|.++.+++|+++| .+|++||||+++. ++|+..||+|++++.++++++.. ++. ..+..+.+.++++++++++
T Consensus 24 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~-~~~---~~~~~~~~~~l~~~la~~~ 99 (419)
T 2eo5_A 24 FPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAH-AAA---NDFYNIPQLELAKKLVTYS 99 (419)
T ss_dssp CCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCC-CSC---SCSCCHHHHHHHHHHHHHS
T ss_pred CCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCcc-ccc---cccCCHHHHHHHHHHHHhC
Confidence 46778899999999 5999999997763 56665589999999999987532 111 1234677899999999999
Q ss_pred CC---CcEEEEcchHHHHHhhhhhhcc-CCCEEE-eCCCchHHHHHHHHhcC-------------CeEEEecCCC-----
Q 013461 168 GT---PDSILYSYGLSTMFSAIPCFCK-KGDLIV-ADEGVHWGIQNGLYLSR-------------STVVYFKHND----- 224 (442)
Q Consensus 168 g~---e~~i~~~sG~~a~~~ai~a~~~-~gd~Vi-~~~~~h~s~~~~~~l~g-------------~~v~~~~~~d----- 224 (442)
|. ++++++++|++|+..+++++.. +||.|+ .+..+|+.+..++.+++ ..++.+++++
T Consensus 100 ~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 179 (419)
T 2eo5_A 100 PGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNP 179 (419)
T ss_dssp SCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCT
T ss_pred CCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCcccccc
Confidence 85 4678888899999999986543 266554 55567776666665443 2455665543
Q ss_pred ----------------HHHHH-HHHHhhc--ccccc--------------------------------------ccc-cc
Q 013461 225 ----------------MDSLR-NTLERVT--ADNKR--------------------------------------SNS-FG 246 (442)
Q Consensus 225 ----------------~~~Le-~~l~~~~--~~~~~--------------------------------------a~~-~g 246 (442)
+++|+ +.+++.. +..+. +|. +|
T Consensus 180 ~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g 259 (419)
T 2eo5_A 180 WHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLG 259 (419)
T ss_dssp TCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred ccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCc
Confidence 45777 7665310 11000 221 22
Q ss_pred ccccCCC-ccccccCCCCCceeEEEEeccccccCCC----cEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHH
Q 013461 247 VLGRSGR-GLTEHCGVPVDKIDIVTAAMGHALATEG----GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV 321 (442)
Q Consensus 247 ~~G~~g~-g~~~~~~v~~~~~diii~S~sK~lg~~G----G~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~ 321 (442)
.+|. +..+++++.+ |++ ||||++|+ | ||++++++++ .+ .... ..+.+.+|+.++++.++++.
T Consensus 260 ---~~g~~~~~~~~~~~~---d~~--t~sK~~~~-G~~riG~~~~~~~~~-~~-~~~~--~~t~~~n~~~~~aa~aal~~ 326 (419)
T 2eo5_A 260 ---RTGKLFAIENFNTVP---DVI--TLAKALGG-GIMPIGATIFRKDLD-FK-PGMH--SNTFGGNALACAIGSKVIDI 326 (419)
T ss_dssp ---TTSSSSGGGGGTCCC---SEE--EECGGGGT-TTSCCEEEEEEGGGC-CC---------CCCCCHHHHHHHHHHHHH
T ss_pred ---cCcchhhHHhcCCCC---CEE--EecccccC-CccceEEEEEchHhh-cC-Cccc--CCCCCCCHHHHHHHHHHHHH
Confidence 2232 2235556544 443 79999984 5 8999998887 55 2112 23345588999999999987
Q ss_pred HhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCccc
Q 013461 322 LEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML 401 (442)
Q Consensus 322 l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~ 401 (442)
+++ +++++++++++|.+.|.++ +... .+.++++++.+.. +..... +++.++ ++||++.+..
T Consensus 327 ~~~---~~~~~~~~~~~l~~~L~~~--~~~~-~~~g~~~~i~~~~-------~~~~~~-~~~~l~-~~Gv~v~~~~---- 387 (419)
T 2eo5_A 327 VKD---LLPHVNEIGKIFAEELQGL--ADDV-RGIGLAWGLEYNE-------KKVRDR-IIGESF-KRGLLLLPAG---- 387 (419)
T ss_dssp HHH---HHHHHHHHHHHHHHHHTTS--SSEE-EEETTEEEEECSC-------HHHHHH-HHHHHH-HTTEECEEET----
T ss_pred HHH---HHHHHHHHHHHHHHHHHHh--hhhe-EeeeEEEEEEEec-------CccHHH-HHHHHH-HCCCEEecCC----
Confidence 754 7889999999999999875 2222 2357788887631 111234 676655 5699998853
Q ss_pred ccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 402 DKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 402 ~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
+..+||+++..+|++|+++++++|+++++++
T Consensus 388 -----~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 388 -----RSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp -----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 1349999999999999999999999987653
No 49
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.93 E-value=5.4e-24 Score=211.82 Aligned_cols=313 Identities=15% Similarity=0.150 Sum_probs=214.8
Q ss_pred CeeEEEeecCCC-CCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh----C----CCcEEEEcch
Q 013461 108 GKEVVNFASANY-LGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G----TPDSILYSYG 178 (442)
Q Consensus 108 G~~~id~~s~~~-l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~----g----~e~~i~~~sG 178 (442)
|+++|||+++.+ ....++|.+.+++.+++++.+.. .. |+......++++.+|+++ | .++++++++|
T Consensus 33 g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~----~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~ 107 (407)
T 2zc0_A 33 GVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKS----VM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGG 107 (407)
T ss_dssp SCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGG----GS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHH
T ss_pred CCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccc----cc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCH
Confidence 678999987643 22225689999999999874311 12 443344567888888877 7 2466777778
Q ss_pred HHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC----CHHHHHHHHH----h--hccccc-c------
Q 013461 179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLE----R--VTADNK-R------ 241 (442)
Q Consensus 179 ~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~----d~~~Le~~l~----~--~~~~~~-~------ 241 (442)
++++..++.+++++||.|+++.++|.++...++..|.+++.++.+ |+++|++.++ + ..+... .
T Consensus 108 t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~np 187 (407)
T 2zc0_A 108 TGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNP 187 (407)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTT
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCC
Confidence 999999999999999999999999999999999999999888763 7889998887 3 111100 0
Q ss_pred ----------------------------cccccccccCCCccccccCCCCCceeEEEEeccccccC--CCcEEEcCHHhH
Q 013461 242 ----------------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVV 291 (442)
Q Consensus 242 ----------------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~--~GG~v~g~~~~i 291 (442)
+|+.+.+ .|........+++.+.+++++||||++|. .+||++++++++
T Consensus 188 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~ 265 (407)
T 2zc0_A 188 MGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRY--EGGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAEGEIL 265 (407)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBS--SCSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEECCHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEECCCccccc--CCCCCCChhhcCCCCCEEEEcccccccCCCcceEEEecCHHHH
Confidence 1221111 11111111122223467899999999983 259999999999
Q ss_pred HHHHhhCCceeccCCCcHHHHHHHHHHHHHH----hcChHHHHHHHHHHHHHHHhhcc-CCCceeecCCCCCEEEEEecC
Q 013461 292 DHQRLSSSGYVFSASLPPYLASAAITAIDVL----EENPDLITKLKKNTAILRTGLSD-IHGLSIASNPESPIVFLILEK 366 (442)
Q Consensus 292 ~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l----~~~~~~~~~l~~~~~~l~~~L~~-~~g~~~~~~~~~~i~~~~~~~ 366 (442)
+.++.....+.++ .+++.++++.++++.. +..+..+++++++++++.+.|++ .+++++..+..+.++++.++.
T Consensus 266 ~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 343 (407)
T 2zc0_A 266 KKVLMQKQPIDFC--APAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPE 343 (407)
T ss_dssp HHHHHHHTTTTSS--SCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECST
T ss_pred HHHHHHHHhhcCC--CCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcCC
Confidence 9887654443333 3667777777777653 23455788889999999999976 467776544456688887743
Q ss_pred CCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhh
Q 013461 367 STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 367 ~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
.. + ..++.+.++++.||.+.++..+..+. ..+..+|++++.. |++|+++++++|+++++++++
T Consensus 344 ~~-----~---~~~l~~~l~~~~gi~v~~g~~~~~~~-~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~~ 406 (407)
T 2zc0_A 344 GA-----D---GISFANELMEREGVVVVPGKPFYTDE-SGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEKFG 406 (407)
T ss_dssp TC-----C---HHHHHHHHHHHTCEECBCSGGGCSSS-CCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHHC-
T ss_pred CC-----C---HHHHHHHHHHhCCeEEECchhccCCC-CCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHhc
Confidence 11 1 23577765555599999876543211 1135699999876 899999999999999988754
No 50
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.93 E-value=7.1e-25 Score=216.75 Aligned_cols=320 Identities=10% Similarity=0.008 Sum_probs=223.2
Q ss_pred eeecCCCCeEEE-CC-----eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC
Q 013461 95 VLESAAGPHTII-SG-----KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168 (442)
Q Consensus 95 ~~~~~~g~~~~~-~G-----~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g 168 (442)
+..+++|+++|. +| +++|||++++ .++..+|++++++.+++.+...+++ .+..++..++++.+++++|
T Consensus 12 ~~~~~~g~~~~d~~~~~~~~~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~~y~-----~~~~~~~~~l~~~l~~~~g 85 (391)
T 4dq6_A 12 VDRSNNFSSKWSEMEKKYGTNDLLPMWVAD-MDFKAAPCIIDSLKNRLEQEIYGYT-----TRPDSYNESIVNWLYRRHN 85 (391)
T ss_dssp CCCTTTTBHHHHCHHHHHSCSCSEECCSSS-CSSCCCHHHHHHHHHHHTTCCCCCB-----CCCHHHHHHHHHHHHHHHC
T ss_pred cccccCCceeeeecccccCCCCceeccccC-CCCCCCHHHHHHHHHHHhCCCCCCC-----CCCHHHHHHHHHHHHHHhC
Confidence 345678899983 44 5669998876 5667789999999999876222211 1457888899999999888
Q ss_pred ----CCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC---------CHHHHHHHHHhh
Q 013461 169 ----TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN---------DMDSLRNTLERV 235 (442)
Q Consensus 169 ----~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~---------d~~~Le~~l~~~ 235 (442)
.++++++++|++++..++.+++++||.|+++.++|.++...++..|.+++.++.+ |++++++.+++
T Consensus 86 ~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~- 164 (391)
T 4dq6_A 86 WKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD- 164 (391)
T ss_dssp CCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-
T ss_pred CCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-
Confidence 3578888899999999999999999999999999999999999999999988765 78888888765
Q ss_pred cccccc------------------------ccccccc--------ccCCCccccccCCCC--CceeEEEEeccccccCCC
Q 013461 236 TADNKR------------------------SNSFGVL--------GRSGRGLTEHCGVPV--DKIDIVTAAMGHALATEG 281 (442)
Q Consensus 236 ~~~~~~------------------------a~~~g~~--------G~~g~g~~~~~~v~~--~~~diii~S~sK~lg~~G 281 (442)
+..... .|+.-++ ..+|........+.+ .+.++++.||||++|+.|
T Consensus 165 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 244 (391)
T 4dq6_A 165 VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAG 244 (391)
T ss_dssp EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGG
T ss_pred CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcc
Confidence 221100 1111111 011111111122222 145689999999998655
Q ss_pred ---cEEEcCH-HhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHhhcc-CCCceeecCC
Q 013461 282 ---GFCTGSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSD-IHGLSIASNP 355 (442)
Q Consensus 282 ---G~v~g~~-~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~-~~~~~~~l~~~~~~l~~~L~~-~~g~~~~~~~ 355 (442)
||+++++ ++++.++.....+. ..+.+++.++++.++++..++ .++.+++++++.+++.+.|++ ++++++..+.
T Consensus 245 ~r~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 323 (391)
T 4dq6_A 245 LQSSYVVLPDEKDYKLLDDAFTRID-IKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPE 323 (391)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTT-CCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCS
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCC
Confidence 9998875 88887765432221 224577777777777775322 345778889999999999987 6788887654
Q ss_pred CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 356 ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 356 ~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
.+.+.++.++.... + ..++.+.++++.||.+.++..+... .+..+|++++ ++++++++++++|++++
T Consensus 324 ~~~~~~~~~~~~~~----~---~~~~~~~l~~~~gi~v~~g~~~~~~---~~~~iRis~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 324 GTYLLWVDFSALGL----S---DEELESILVQKGKVALNQGNSFGIG---GSGYQRINLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp BSSEEEEECGGGCC----C---HHHHHHHHHHTTCEECEEGGGGCTT---CTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEhhhcCC----C---HHHHHHHHHHhCCEEeeCchhhCCC---CCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 55566677743100 1 2357776554449999987654321 1256999998 68999999999999875
No 51
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.93 E-value=1e-24 Score=220.17 Aligned_cols=332 Identities=16% Similarity=0.133 Sum_probs=219.1
Q ss_pred CCCHHHHHHHHhhhcCCCCCcccccccccCCCeeecCCCCeEE--ECCeeEEEeecCC---CCCCCCChHHH-H-HHHH-
Q 013461 63 PLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI--ISGKEVVNFASAN---YLGLIGHEKLL-E-SCTS- 134 (442)
Q Consensus 63 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~G~~~id~~s~~---~l~~~~~p~v~-e-a~~~- 134 (442)
+++.+++.+..+++. +.+. +..+..+.+++|.++| .||++||||+++. .+|+ +||+|+ + |+.+
T Consensus 14 ~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~-~~p~v~~~~A~~~~ 84 (449)
T 2cjg_A 14 PTTPDRVHEVLGRSM---LVDG-----LDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGM-NPPALVDDREFHAE 84 (449)
T ss_dssp -CCGGGHHHHHHTTS---CCCS-----CSSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCB-SCHHHHTCHHHHHH
T ss_pred CCCHHHHHHHHHHhh---cccC-----CCeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCC-CCHHHHHHHHHHHH
Confidence 677777665554432 1111 1112224689999999 4899999996653 3454 489999 9 9999
Q ss_pred --HHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC---CCcEEEEcchHHHHHhhhhhh---cc-C----------CCE
Q 013461 135 --ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG---TPDSILYSYGLSTMFSAIPCF---CK-K----------GDL 195 (442)
Q Consensus 135 --~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g---~e~~i~~~sG~~a~~~ai~a~---~~-~----------gd~ 195 (442)
++++... + ++ .+..+.+.+++++|+++++ .++++++++|++|+..+++++ .+ + ||.
T Consensus 85 ~~~~~~~~~-~-~~---~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~ 159 (449)
T 2cjg_A 85 LMQAALNKP-S-NS---DVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQ 159 (449)
T ss_dssp HHHHHTCCC-C-TT---TCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCE
T ss_pred HHHHHhcCC-C-Cc---ccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCE
Confidence 8877432 1 12 1356788999999999984 568899999999999998754 23 1 665
Q ss_pred E-EeCCCchHHHHHHHHhcCC-------------eEEEecCCC--HHH-------------HHHHHHhhcccccc-----
Q 013461 196 I-VADEGVHWGIQNGLYLSRS-------------TVVYFKHND--MDS-------------LRNTLERVTADNKR----- 241 (442)
Q Consensus 196 V-i~~~~~h~s~~~~~~l~g~-------------~v~~~~~~d--~~~-------------Le~~l~~~~~~~~~----- 241 (442)
| +.+..+|+.+..++.+++. .++.++++| .+. |++.+++..+..+.
T Consensus 160 Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep 239 (449)
T 2cjg_A 160 VLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEP 239 (449)
T ss_dssp EEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECS
T ss_pred EEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeC
Confidence 5 5555677765554444442 567777777 443 77777532221111
Q ss_pred ---------------------------------cccccccccCCCc-cccccCCCCCceeEEEEeccccccCCCcEEEcC
Q 013461 242 ---------------------------------SNSFGVLGRSGRG-LTEHCGVPVDKIDIVTAAMGHALATEGGFCTGS 287 (442)
Q Consensus 242 ---------------------------------a~~~g~~G~~g~g-~~~~~~v~~~~~diii~S~sK~lg~~GG~v~g~ 287 (442)
.|+ | +|.+|.+ ..+++++.+ |+ .||||++ +.|+++++
T Consensus 240 ~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g-~g~~g~~~~~~~~~~~~---di--~t~sK~l--~iG~~~~~ 310 (449)
T 2cjg_A 240 IQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT-G-CGLTGTAWAYQQLDVAP---DI--VAFGKKT--QVCGVMAG 310 (449)
T ss_dssp EETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSTHHHHTCCC---SE--EEECGGG--SSEEEEEC
T ss_pred cCCCCCCccCCHHHHHHHHHHHHHCCcEEEEecccc-C-CCccCcceeecccCCCc---eE--EEecCcc--cEEEEEEC
Confidence 222 1 2333332 235667655 44 4799999 56788889
Q ss_pred HHhHHHHHh--hC-CceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccC----CC-ceeecCCCCCE
Q 013461 288 ARVVDHQRL--SS-SGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI----HG-LSIASNPESPI 359 (442)
Q Consensus 288 ~~~i~~l~~--~~-~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~----~g-~~~~~~~~~~i 359 (442)
+++++.+.. .. .....+.+.+|+.++++.++++.+++ +++.++++++++++++.|+++ +. +... .+.+.+
T Consensus 311 ~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~~~g~~ 388 (449)
T 2cjg_A 311 RRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEA-EGLFERAVQHGKYLRARLDELAADFPAVVLDP-RGRGLM 388 (449)
T ss_dssp GGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEE-EEETTE
T ss_pred HHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeE-eeccEE
Confidence 998875321 11 11112345589999999999998865 357889999999999999764 33 4333 235778
Q ss_pred EEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 360 VFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
+.+.+.. .....++++.++ ++||++.++. +..+|++++..+|++||++++++|+++++++
T Consensus 389 ~~~~~~~--------~~~~~~~~~~l~-~~Gv~v~~~g---------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 389 CAFSLPT--------TADRDELIRQLW-QRAVIVLPAG---------ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp EEEECSS--------HHHHHHHHHHHH-HTTEECEEET---------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECC--------hHHHHHHHHHHH-HCCeEEecCC---------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 8877632 112446787766 4699998763 1349999999999999999999999988754
No 52
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.93 E-value=7.8e-25 Score=217.10 Aligned_cols=307 Identities=18% Similarity=0.207 Sum_probs=215.2
Q ss_pred CCCeeecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 92 ~~~~~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
.|+++.+++|+++| .+|+++|||+++ +++|+ .+|++++++.+++++++..+ +. | ..+...++++++++++
T Consensus 27 ~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~-~~~~v~~a~~~~~~~~~~~~---~~-~-~~~~~~~l~~~la~~~ 100 (395)
T 1vef_A 27 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGH-GNPEVVEAVKRQAETLMAMP---QT-L-PTPMRGEFYRTLTAIL 100 (395)
T ss_dssp CSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCC---TT-S-CCHHHHHHHHHHHHTS
T ss_pred CCccEEecccCEEEeCCCCEEEEccCccccccCCC-CCHHHHHHHHHHHHhCCCCc---cc-c-CCHHHHHHHHHHHHhc
Confidence 35678899999999 499999999776 56676 68999999999998865432 11 2 4678899999999999
Q ss_pred C--CCcEEEEcchHHHHHhhhhhhc--cCCC-EEEeCCCchHHHHHHHHhcCCe------------EEEecCCCHHHHHH
Q 013461 168 G--TPDSILYSYGLSTMFSAIPCFC--KKGD-LIVADEGVHWGIQNGLYLSRST------------VVYFKHNDMDSLRN 230 (442)
Q Consensus 168 g--~e~~i~~~sG~~a~~~ai~a~~--~~gd-~Vi~~~~~h~s~~~~~~l~g~~------------v~~~~~~d~~~Le~ 230 (442)
| .++++++++|++|+..++.++. .+|| +|+.+..+|..+...+.+.|.+ +..++++|+++|++
T Consensus 101 ~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~ 180 (395)
T 1vef_A 101 PPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKR 180 (395)
T ss_dssp CTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHH
T ss_pred CCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHH
Confidence 5 5678888999999999998763 4555 4555556676676677776664 56677789999998
Q ss_pred HHHhhcccc-------------c----c------------------cccccccccCCCcc-ccccCCCCCceeEEEEecc
Q 013461 231 TLERVTADN-------------K----R------------------SNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMG 274 (442)
Q Consensus 231 ~l~~~~~~~-------------~----~------------------a~~~g~~G~~g~g~-~~~~~v~~~~~diii~S~s 274 (442)
.++..+.-. . . +|+ | ++..|... .+.+++. .|++ |||
T Consensus 181 ~i~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~-~-~~~~g~~~~~~~~~~~---~d~~--s~s 253 (395)
T 1vef_A 181 AVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT-G-MGRTGKRFAFEHFGIV---PDIL--TLA 253 (395)
T ss_dssp HCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSTHHHHTCC---CSEE--EEC
T ss_pred HhccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CccCCchhHhhhcCCC---CCEE--EEc
Confidence 876422100 0 0 222 1 12222221 1233433 3554 899
Q ss_pred ccccC--CCcEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceee
Q 013461 275 HALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 352 (442)
Q Consensus 275 K~lg~--~GG~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~ 352 (442)
|++++ +.|++++++++++.++... ...+.+.+++.++++.++++.+++ +++.++++++++++.+.|+++ +.++.
T Consensus 254 K~~~~g~~~G~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~l~~~l~~~-~~~~~ 329 (395)
T 1vef_A 254 KALGGGVPLGVAVMREEVARSMPKGG--HGTTFGGNPLAMAAGVAAIRYLER-TRLWERAAELGPWFMEKLRAI-PSPKI 329 (395)
T ss_dssp GGGGTTSSCEEEEEEHHHHHTSCTTS--SCCSSTTCHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHTS-CCTTE
T ss_pred ccccCCCceEEEEehHHHHhhhccCC--cCCCcCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHh-hcCce
Confidence 99975 2489999988877665421 233445688888888889988765 447888999999999999876 32211
Q ss_pred --cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHH
Q 013461 353 --SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESL 430 (442)
Q Consensus 353 --~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l 430 (442)
..+.++++++.++.+ ..++.+.+++++||.+.+.. +..+||+++..+|++|+++++++|
T Consensus 330 ~~~~~~g~~~~~~~~~~----------~~~l~~~l~~~~gi~v~~~~---------~~~iRi~~~~~~~~~~i~~~~~~l 390 (395)
T 1vef_A 330 REVRGMGLMVGLELKEK----------AAPYIARLEKEHRVLALQAG---------PTVIRFLPPLVIEKEDLERVVEAV 390 (395)
T ss_dssp EEEEEETTEEEEEESSC----------SHHHHHHHHHHHCEECEESS---------TTEEEECCCTTCCHHHHHHHHHHH
T ss_pred EEEEEEEEEEEEEEcCh----------HHHHHHHHHHHCCeEEecCC---------CCEEEEeCCCCCCHHHHHHHHHHH
Confidence 123567888887431 12567765525699998742 245999999889999999999999
Q ss_pred HHHH
Q 013461 431 KRIS 434 (442)
Q Consensus 431 ~~~~ 434 (442)
++++
T Consensus 391 ~~~l 394 (395)
T 1vef_A 391 RAVL 394 (395)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 53
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.93 E-value=9.5e-24 Score=211.79 Aligned_cols=310 Identities=16% Similarity=0.135 Sum_probs=212.0
Q ss_pred CCe-eecCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh
Q 013461 93 PPV-LESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (442)
Q Consensus 93 ~~~-~~~~~g~~~~-~~G~~~id~~s~---~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~ 167 (442)
|++ +.+++|.++| .+|++|||++++ +++|+ .+|+|++++.++++++...+. + . +..+.+.++++++++++
T Consensus 25 ~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~~-~--~-~~~~~~~~l~~~la~~~ 99 (429)
T 1s0a_A 25 PVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY-NHPQLNAAMKSQIDAMSHVMF-G--G-ITHAPAIELCRKLVAMT 99 (429)
T ss_dssp CCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHHHCSCCCC-S--S-EECHHHHHHHHHHHHHS
T ss_pred CceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCC-CCHHHHHHHHHHHHhcccccc-c--c-cCCHHHHHHHHHHHHhC
Confidence 444 7899999999 599999999776 35665 589999999999987543211 0 1 13467889999999999
Q ss_pred C--CCcEEEEcchHHHHHhhhhhhc---c----CCCEEEeCC-CchHHHHHHHHhcC---------------CeEEEec-
Q 013461 168 G--TPDSILYSYGLSTMFSAIPCFC---K----KGDLIVADE-GVHWGIQNGLYLSR---------------STVVYFK- 221 (442)
Q Consensus 168 g--~e~~i~~~sG~~a~~~ai~a~~---~----~gd~Vi~~~-~~h~s~~~~~~l~g---------------~~v~~~~- 221 (442)
+ .++++++++|++|+..+++++. + +||.|++.+ .+|.....++.+++ ...+.++
T Consensus 100 ~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (429)
T 1s0a_A 100 PQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ 179 (429)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCC
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCc
Confidence 5 5788889999999999987643 3 577655544 57766655554432 3444443
Q ss_pred --------CCCHHHHHHHHHhhcccccc---------------------------------------ccc-ccccccCCC
Q 013461 222 --------HNDMDSLRNTLERVTADNKR---------------------------------------SNS-FGVLGRSGR 253 (442)
Q Consensus 222 --------~~d~~~Le~~l~~~~~~~~~---------------------------------------a~~-~g~~G~~g~ 253 (442)
++|+++|++.+++..+..+. +|. + |.+|.
T Consensus 180 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~---g~~g~ 256 (429)
T 1s0a_A 180 SRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGF---GRTGK 256 (429)
T ss_dssp SBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTT---TTTSS
T ss_pred ccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCC---cccch
Confidence 35788999888742111000 221 2 22222
Q ss_pred -ccccccCCCCCceeEEEEeccccccC---CCcEEEcCHHhHHHHHhhC-Cc--eeccCCCcHHHHHHHHHHHHHHhcCh
Q 013461 254 -GLTEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLSS-SG--YVFSASLPPYLASAAITAIDVLEENP 326 (442)
Q Consensus 254 -g~~~~~~v~~~~~diii~S~sK~lg~---~GG~v~g~~~~i~~l~~~~-~~--~~~s~s~~p~~aaaa~aal~~l~~~~ 326 (442)
+..+++++.+ |++ ||||+++. +.|++++++++++.+.... .. ...+.+.+++.++++.++++.+++.
T Consensus 257 ~~~~~~~~~~~---d~~--t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~- 330 (429)
T 1s0a_A 257 LFACEHAEIAP---DIL--CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESG- 330 (429)
T ss_dssp SSGGGGGTCCC---SEE--EECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTC-
T ss_pred HHHhhhcCCCC---CEE--EecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhC-
Confidence 2234455544 444 79999974 3489999999999887531 11 1223455888899999999988664
Q ss_pred HHHHHHHHHHHHHHHhhccC---CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCccccc
Q 013461 327 DLITKLKKNTAILRTGLSDI---HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK 403 (442)
Q Consensus 327 ~~~~~l~~~~~~l~~~L~~~---~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~ 403 (442)
++.++++++++++.+.|+++ +++... .+.+.++++.+.... + ..++.+.++ ++||++.+..
T Consensus 331 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~~~~~~~~-----~---~~~l~~~l~-~~Gi~v~~~~------ 394 (429)
T 1s0a_A 331 DWQQQVADIEVQLREQLAPARDAEMVADV-RVLGAIGVVETTHPV-----N---MAALQKFFV-EQGVWIRPFG------ 394 (429)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGCTTEEEE-EEETTEEEEEESSCB-----C---HHHHHHHHH-HTTEECCCBT------
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEE-EEeeEEEEEEECCcc-----c---HHHHHHHHH-HCCCEEeccC------
Confidence 57889999999999999875 344322 234678888874321 1 235666655 5699997631
Q ss_pred CCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 404 CRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 404 ~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
..+||+++..+|++|+++++++|++++++
T Consensus 395 ----~~iRis~~~~~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 395 ----KLIYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp ----TEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred ----CEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 34999999999999999999999987643
No 54
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.93 E-value=2.5e-24 Score=212.91 Aligned_cols=311 Identities=14% Similarity=0.177 Sum_probs=207.0
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC----CCcEEEEcchHHHH
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG----TPDSILYSYGLSTM 182 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g----~e~~i~~~sG~~a~ 182 (442)
+|+++|||+++++ .++.+|.+.+++.+++++....+ ....|..++...+.+.+.+.+| .++++++++|++++
T Consensus 28 ~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y---~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~ 103 (388)
T 1j32_A 28 EGIDVCSFSAGEP-DFNTPKHIVEAAKAALEQGKTRY---GPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI 103 (388)
T ss_dssp TTCCCEECCCSSC-SSCCCHHHHHHHHHHHHTTCCSC---CCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred cCCCEEECCCCCC-CCCCCHHHHHHHHHHHhcCCCCC---CCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHH
Confidence 5788999988764 55568999999999987621111 1122334444444444444445 24677778889999
Q ss_pred HhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC-------CHHHHHHHHHhhcccccc--------------
Q 013461 183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKR-------------- 241 (442)
Q Consensus 183 ~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~~-------------- 241 (442)
..++.+++++||.|+++.+.|.++...++..|.+++.++.+ |+++|++.+++.+.....
T Consensus 104 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~ 183 (388)
T 1j32_A 104 FNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPD 183 (388)
T ss_dssp HHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred HHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHH
Confidence 99999999999999999999999999999999999888753 577777776542211000
Q ss_pred ----------ccccccccc--------CCCccccccCCCC--CceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhC
Q 013461 242 ----------SNSFGVLGR--------SGRGLTEHCGVPV--DKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSS 298 (442)
Q Consensus 242 ----------a~~~g~~G~--------~g~g~~~~~~v~~--~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~ 298 (442)
.|+.-++-+ .|........+.+ .++|+++.|+||++|+.| ||+++++++++.++...
T Consensus 184 ~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~ 263 (388)
T 1j32_A 184 EVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQ 263 (388)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeCHHHHHHHHHHH
Confidence 111111110 0111111111221 347899999999998665 99999999988876543
Q ss_pred CceeccCCCcHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHH
Q 013461 299 SGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQL 377 (442)
Q Consensus 299 ~~~~~s~s~~p~~aaaa~aal~~l~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 377 (442)
... +.+.+++.++++.++++..++ .++++++++++++++.+.|++++|+++..+..+.++++.+... + .+
T Consensus 264 ~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~-~---~~--- 334 (388)
T 1j32_A 264 GHS--TSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKT-G---RS--- 334 (388)
T ss_dssp HTT--TCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGG-T---CC---
T ss_pred hhc--ccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecCCC-C---CC---
Confidence 222 233467777777777763321 2457788899999999999887788876544444555544310 0 01
Q ss_pred HHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 378 LEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 378 ~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
..++++.+++++||.+.++..+.. +..+|++++ +|++++++++++|+++++++
T Consensus 335 ~~~~~~~l~~~~gi~v~~g~~~~~-----~~~iRis~~--~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 335 SLDFCSELLDQHQVATVPGAAFGA-----DDCIRLSYA--TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp HHHHHHHHHHHHCEECEEGGGGTC-----TTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEeChhhhCC-----CCcEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 236777655546999998765432 355999997 69999999999999988765
No 55
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.93 E-value=3.1e-24 Score=216.64 Aligned_cols=314 Identities=15% Similarity=0.189 Sum_probs=215.1
Q ss_pred CeeEEEeecCCC-CCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh----CC---CcEEEEcchH
Q 013461 108 GKEVVNFASANY-LGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT---PDSILYSYGL 179 (442)
Q Consensus 108 G~~~id~~s~~~-l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~----g~---e~~i~~~sG~ 179 (442)
+.++|||+++.+ ..+.+++++.+++.+++++.+... ..|+......+|++.+|+++ |. ++++++++|+
T Consensus 75 ~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~----~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~ 150 (448)
T 3aow_A 75 TSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKA----LQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQ 150 (448)
T ss_dssp TSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHH----HSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHH
T ss_pred CCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHH----hCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHH
Confidence 356899987653 233357899999999987632100 12222233467777777777 75 5677777888
Q ss_pred HHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC----CCHHHHHHHHH----h--hcccc-cc-------
Q 013461 180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH----NDMDSLRNTLE----R--VTADN-KR------- 241 (442)
Q Consensus 180 ~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~----~d~~~Le~~l~----~--~~~~~-~~------- 241 (442)
+++..++.+++++||.|+++.++|.++...++..|++++.++. .|+++|++.++ + ..+-. ..
T Consensus 151 ~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPt 230 (448)
T 3aow_A 151 QALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPA 230 (448)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTT
T ss_pred HHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCc
Confidence 9999999999999999999999999999999999999988876 37899999887 3 11110 00
Q ss_pred -----------------ccccccccc--------CCCccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHH
Q 013461 242 -----------------SNSFGVLGR--------SGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDH 293 (442)
Q Consensus 242 -----------------a~~~g~~G~--------~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~ 293 (442)
.|++-++-+ .|........++..+.+++++||||++| +| ||+++++++++.
T Consensus 231 G~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~~~~~l~~~ 309 (448)
T 3aow_A 231 GVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVGDPGIIRK 309 (448)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEEECHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEEeCHHHHHH
Confidence 111111111 1111111222333457899999999998 55 999999999998
Q ss_pred HHhhCCceeccCCCcHHHHHHHHHHHHHH---hcChHHHHHHHHHHHHHHHhhcc-CC-CceeecCCCCCEEEEEecCCC
Q 013461 294 QRLSSSGYVFSASLPPYLASAAITAIDVL---EENPDLITKLKKNTAILRTGLSD-IH-GLSIASNPESPIVFLILEKST 368 (442)
Q Consensus 294 l~~~~~~~~~s~s~~p~~aaaa~aal~~l---~~~~~~~~~l~~~~~~l~~~L~~-~~-g~~~~~~~~~~i~~~~~~~~~ 368 (442)
+......+.++ .+++.++++.++|+.. +....+++.++++++++.+.|++ ++ |+++..+..+.++++.++...
T Consensus 310 l~~~~~~~~~~--~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~~ 387 (448)
T 3aow_A 310 MEIAKQSTDLC--TNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGI 387 (448)
T ss_dssp HHHHHHHHHSS--CCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECSTTC
T ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCCCC
Confidence 87543333333 3677777777777642 22345677888899999999986 45 677765556778888874311
Q ss_pred CCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhh
Q 013461 369 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 369 ~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
+ ..++++.++++ ||.+.++..+.... ..+..+|++++. .|++||++++++|++++++.++
T Consensus 388 -----~---~~~l~~~l~~~-gV~v~pg~~f~~~~-~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~~~ 447 (448)
T 3aow_A 388 -----D---SKKMLERAIKK-GVAYVPGEAFYAHR-DVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEELK 447 (448)
T ss_dssp -----C---HHHHHHHHHHT-TEECEEGGGGSTTC-CCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHHHC
T ss_pred -----C---HHHHHHHHHHC-CcEEEcchhhcCCC-CCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 1 23677766655 99999986543211 113569999987 4899999999999999987764
No 56
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.93 E-value=2.7e-24 Score=213.45 Aligned_cols=323 Identities=12% Similarity=0.042 Sum_probs=217.8
Q ss_pred eeecCCCCeEEE-CCe-------eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhh
Q 013461 95 VLESAAGPHTII-SGK-------EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166 (442)
Q Consensus 95 ~~~~~~g~~~~~-~G~-------~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~ 166 (442)
+..+++|+++|. +|+ ++|||++++ ++++.+|.+.+++.+++++...++ +.. ..++++.+|++
T Consensus 9 ~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~~y-------~~~--~~~l~~~la~~ 78 (399)
T 1c7n_A 9 ISRKNLGSLKWDLMYSQNPEVGNEVVPLSVAD-MEFKNPPELIEGLKKYLDETVLGY-------TGP--TEEYKKTVKKW 78 (399)
T ss_dssp CCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSS-CSSCCCHHHHHHHHHHHHHCCCSS-------BCC--CHHHHHHHHHH
T ss_pred ccccCCCccccccchhhccccCCCceeeeecC-CCCCCCHHHHHHHHHHHhcCCCCC-------CCC--cHHHHHHHHHH
Confidence 345789999994 663 799997766 567778999999999987521111 111 35666666665
Q ss_pred ----hC----CCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC--------CCHHHHHH
Q 013461 167 ----LG----TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRN 230 (442)
Q Consensus 167 ----~g----~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~--------~d~~~Le~ 230 (442)
+| .++++++++|++++..++.+++++||.|+++.++|.++...++..|.+++.++. .|+++|++
T Consensus 79 l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~ 158 (399)
T 1c7n_A 79 MKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEK 158 (399)
T ss_dssp HHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHH
T ss_pred HHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHH
Confidence 46 356788888899999999999999999999999999999999999999988775 46888888
Q ss_pred HHHhhcccccc-------------------------cccccccc--------cCCCccccccCCCC--CceeEEEEeccc
Q 013461 231 TLERVTADNKR-------------------------SNSFGVLG--------RSGRGLTEHCGVPV--DKIDIVTAAMGH 275 (442)
Q Consensus 231 ~l~~~~~~~~~-------------------------a~~~g~~G--------~~g~g~~~~~~v~~--~~~diii~S~sK 275 (442)
.+++....... .|+.-++- ..|........+.+ .+.++++.|+||
T Consensus 159 ~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK 238 (399)
T 1c7n_A 159 LSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSK 238 (399)
T ss_dssp HHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHH
T ss_pred HhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChh
Confidence 87621111000 11211110 01111111122211 245789999999
Q ss_pred cccCCC---cEEEcC-HHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHhhcc-CCCc
Q 013461 276 ALATEG---GFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSD-IHGL 349 (442)
Q Consensus 276 ~lg~~G---G~v~g~-~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~-~~~~~~~~l~~~~~~l~~~L~~-~~g~ 349 (442)
++|+.| ||++++ +++++.++.....+.++ +.+++.++++.++++..+ ..+..+++++++++++.+.|++ ++++
T Consensus 239 ~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 317 (399)
T 1c7n_A 239 TFNIAGMGMSNIIIKNPDIRERFTKSRDATSGM-PFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEI 317 (399)
T ss_dssp HHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCC-CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred hccccchheEEEEECCHHHHHHHHHHHhhcccC-CCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 998655 999986 67888876543332222 347777777777776522 2345677888999999999987 7788
Q ss_pred eeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHH
Q 013461 350 SIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACES 429 (442)
Q Consensus 350 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~ 429 (442)
++..+..+.++++.++.. + .+ ..++.+.+++++||.+.++..+... .+..+||+++. +++++++++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~-~---~~---~~~~~~~l~~~~gi~v~~g~~~~~~---~~~~iRis~~~--~~~~l~~~l~~ 385 (399)
T 1c7n_A 318 KAPLIEGTYLQWIDFRAL-K---MD---HKAMEEFMIHKAQIFFDEGYIFGDG---GIGFERINLAA--PSSVIQESLER 385 (399)
T ss_dssp BCCCCSBSSEEEEECGGG-C---CC---HHHHHHHHHHTTCCCCEEGGGGCGG---GTTEEEEECCS--CHHHHHHHHHH
T ss_pred eEecCCceEEEEEEcccC-C---CC---HHHHHHHHHHhCCEEEeCccccCCC---CCCeEEEEecc--CHHHHHHHHHH
Confidence 776543444556777421 0 01 2357776555679999987654310 13469999986 48999999999
Q ss_pred HHHHHHHHhhc
Q 013461 430 LKRISAVVLRD 440 (442)
Q Consensus 430 l~~~~~~~~~~ 440 (442)
|+++++++.++
T Consensus 386 l~~~l~~~~~~ 396 (399)
T 1c7n_A 386 LNKALKDLKNR 396 (399)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHhc
Confidence 99999877543
No 57
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.93 E-value=7e-24 Score=208.83 Aligned_cols=301 Identities=11% Similarity=0.077 Sum_probs=207.2
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh----CC----C-cEEEEcc
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----P-DSILYSY 177 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~----g~----e-~~i~~~s 177 (442)
+|+++|||+++.+ .++.+|.+++++.+++++.. ...|+......++++.+|+++ |. + +++++++
T Consensus 23 ~g~~~idl~~~~~-~~~~~~~v~~a~~~~~~~~~------~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g 95 (376)
T 2dou_A 23 RGVGLIDLSIGST-DLPPPEAPLKALAEALNDPT------TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIG 95 (376)
T ss_dssp TTCCCEECSSCCC-CCCCCHHHHHHHHHHTTCGG------GSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESS
T ss_pred cCCCEEeccCCCC-CCCCCHHHHHHHHHHHhCCC------cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCC
Confidence 4788999988764 56678999999999886521 112333456678888888887 75 3 6777778
Q ss_pred hHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC-----CCHHHHHHHHHhhcccc-------cc----
Q 013461 178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADN-------KR---- 241 (442)
Q Consensus 178 G~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~-----~d~~~Le~~l~~~~~~~-------~~---- 241 (442)
|++++..++.+++++||.|+++.++|.++...++..|.+++.++. .|++++++.++..+... +.
T Consensus 96 ~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~ 175 (376)
T 2dou_A 96 SQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVA 175 (376)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCC
T ss_pred cHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCCCCCcCccC
Confidence 889999999999999999999999999999999999999988875 36778887775422110 00
Q ss_pred -----------------------cccccccccCCCccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHHH
Q 013461 242 -----------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQR 295 (442)
Q Consensus 242 -----------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~ 295 (442)
+|+.+.++..........+ ..+.+++++||||++|+.| ||+++++++++.++
T Consensus 176 ~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~ 253 (376)
T 2dou_A 176 DWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPG--AKERVVELFSLSKSYNLAGFRLGFALGSEEALARLE 253 (376)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTT--GGGTEEEEEEHHHHHTCGGGCCEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCC--CCCcEEEEecchhhcCChhheeEEEecCHHHHHHHH
Confidence 1111111100111112111 1346899999999998665 99999999999887
Q ss_pred hhCCceeccCCCcHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh
Q 013461 296 LSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND 374 (442)
Q Consensus 296 ~~~~~~~~s~s~~p~~aaaa~aal~~l~-~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 374 (442)
.....+.+ +.+++.++++.++++..+ ..++.+++++++++++.+.|++. +++..+..+.++++.++... +
T Consensus 254 ~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~-----~ 324 (376)
T 2dou_A 254 RVKGVIDF--NQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV--LSLLPPRATMYLWGRLPEGV-----D 324 (376)
T ss_dssp HHHHHHCC--CSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEECCTTC-----C
T ss_pred HHHHhccc--CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEECCCCC-----C
Confidence 64333222 346777777777776522 23456778889999999999875 66654334556777774311 1
Q ss_pred HHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 375 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 375 ~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
..++++.++++ ||.+.++..+... .+..+|++++. +++++++++++|++++
T Consensus 325 ---~~~~~~~l~~~-gi~v~~g~~f~~~---~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 325 ---DLEFGLRLVER-GVALAPGRGFGPG---GKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp ---HHHHHHHHHHT-TEECEEGGGGCGG---GTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHC-CEEEcCchhhCCC---CCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 23577765555 9999987654311 13469999985 8999999999998754
No 58
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.93 E-value=2.3e-24 Score=211.77 Aligned_cols=299 Identities=16% Similarity=0.146 Sum_probs=208.4
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC--------CCcEEEEcch
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------TPDSILYSYG 178 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g--------~e~~i~~~sG 178 (442)
+|+++|||+++.+ +++.+|.+++++.+++++.... |+......++++.+|++++ .++++++++|
T Consensus 27 ~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~-------y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 98 (370)
T 2z61_A 27 EGKKVIHLEIGEP-DFNTPKPIVDEGIKSLKEGKTH-------YTDSRGILELREKISELYKDKYKADIIPDNIIITGGS 98 (370)
T ss_dssp TTCCCEECCCCSC-SSCCCHHHHHHHHHHHHTTCCS-------CCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSH
T ss_pred cCCCEEEccCCCC-CCCCCHHHHHHHHHHHHcCccC-------CCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCCh
Confidence 3678999988764 5556799999999998762111 2222233567777777663 2578888899
Q ss_pred HHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCCCHHHHHHHHHhhcccccc-----------------
Q 013461 179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKR----------------- 241 (442)
Q Consensus 179 ~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~d~~~Le~~l~~~~~~~~~----------------- 241 (442)
++++..++.+++++||.|+++.++|.++...++..|.+++.++ .|+++|++.+++.......
T Consensus 99 ~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~l~~ 177 (370)
T 2z61_A 99 SLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD-FTVESLEEALSDKTKAIIINSPSNPLGEVIDREIYE 177 (370)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC-SSHHHHHHHCCSSEEEEEEESSCTTTCCCCCHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC-CCHHHHHHhcccCceEEEEcCCCCCcCcccCHHHHH
Confidence 9999999999999999999999999999999999999999998 7889998877542111000
Q ss_pred -------------cccccccccCCCccccccCCC-CCceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCCceecc
Q 013461 242 -------------SNSFGVLGRSGRGLTEHCGVP-VDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFS 304 (442)
Q Consensus 242 -------------a~~~g~~G~~g~g~~~~~~v~-~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~~~~~s 304 (442)
+|+.+.++ |.. .....++ ..+.|++++||||++|+.| ||+++++++++.++.....+ +
T Consensus 178 ~~~~~~~~li~De~~~~~~~~--g~~-~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~--~ 252 (370)
T 2z61_A 178 FAYENIPYIISDEIYNGLVYE--GKC-YSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEIIEAILKLQQNL--F 252 (370)
T ss_dssp HHHHHCSEEEEECTTTTCBSS--SCC-CCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHH--T
T ss_pred HHHHcCCEEEEEcchhhcccC--CCC-cCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHHHHHHHHHHhhc--c
Confidence 12211111 110 0111111 2357999999999998665 99999999998886543332 2
Q ss_pred CCCcHHHHHHHHHHHHH-Hh-cChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHH
Q 013461 305 ASLPPYLASAAITAIDV-LE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIA 382 (442)
Q Consensus 305 ~s~~p~~aaaa~aal~~-l~-~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~ 382 (442)
.+.+++.++++.++++. .+ ..++++++++++++++.+.|+++ |+++..+..+.++++.++. + ..++.
T Consensus 253 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~-------~---~~~~~ 321 (370)
T 2z61_A 253 ISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEVNNPIGAYYVFPNIGE-------D---GREFA 321 (370)
T ss_dssp SSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCBTTEECCBCSS-------C---HHHHH
T ss_pred cCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCcceEEEEecCC-------C---HHHHH
Confidence 34577777777777764 22 23457888999999999999887 8877644345556655532 1 23577
Q ss_pred HHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHH
Q 013461 383 DWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 435 (442)
Q Consensus 383 ~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~ 435 (442)
+.+++++||.+.++..+... .+..+|++++ ++++++++++++|+++++
T Consensus 322 ~~l~~~~gi~v~~g~~f~~~---~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 322 YKLLKEKFVALTPGIGFGSK---GKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp HHHHHHHCEECEEGGGGCGG---GSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCEEEeCchhhCCC---CCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 76554569999987654321 1346999999 699999999999998763
No 59
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.93 E-value=8.4e-24 Score=209.37 Aligned_cols=301 Identities=15% Similarity=0.121 Sum_probs=201.8
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh----C----CCcEEEEcch
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G----TPDSILYSYG 178 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~----g----~e~~i~~~sG 178 (442)
+|+++|||+++. ..+..+|++++++.+++++...++. ...|. .++++.+|+++ | .++++++++|
T Consensus 29 ~g~~~i~l~~g~-~~~~~~~~v~~a~~~~~~~~~~~y~---~~~g~----~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~ 100 (391)
T 3h14_A 29 AGRRIIHMEVGQ-PGTGAPRGAVEALAKSLETDALGYT---VALGL----PALRQRIARLYGEWYGVDLDPGRVVITPGS 100 (391)
T ss_dssp TTCCCEECCCSS-CSSCSCHHHHHHHHHHHC-------------CC----HHHHHHHHHHHHHHHCCCCCGGGEEEESSH
T ss_pred cCCCeEEccCCC-CCCCCCHHHHHHHHHHHhcCCCCCC---CCCCh----HHHHHHHHHHHHHHhCCCCCHHHEEEecCh
Confidence 688999998875 4555689999999998875221211 11233 45556666554 3 3578888899
Q ss_pred HHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC-------CHHHHHHHHHhhccc-------ccc---
Q 013461 179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTAD-------NKR--- 241 (442)
Q Consensus 179 ~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-------d~~~Le~~l~~~~~~-------~~~--- 241 (442)
++++..++.+++++||.|+++.++|.++...++..|.+++.++.+ |+++|++. .+.. ++.
T Consensus 101 ~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~~p~nptG~~ 177 (391)
T 3h14_A 101 SGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTM 177 (391)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEESSCTTTCCC
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---CCeEEEECCCCCCCCcc
Confidence 999999999999999999999999999999999999999988864 55555543 1110 000
Q ss_pred --------------cccccc----------cccCCCccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHH
Q 013461 242 --------------SNSFGV----------LGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQ 294 (442)
Q Consensus 242 --------------a~~~g~----------~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l 294 (442)
.|++-+ ++.......+ . .+.+++++|+||++|+.| ||+++++++++.+
T Consensus 178 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~---~--~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~ 252 (391)
T 3h14_A 178 LDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALE---L--TDECYVINSFSKYFSMTGWRVGWMVVPEDQVRVV 252 (391)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG---T--CSSSEEEEESSSTTCCTTSCCEEEECCGGGHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhh---c--CCCEEEEEechhccCCccceeEEEEeCHHHHHHH
Confidence 122111 1111111111 1 345799999999998666 9999999999988
Q ss_pred HhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCcee-ecCCCCCEEEEEecCCCCCchh
Q 013461 295 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSI-ASNPESPIVFLILEKSTGSMKN 373 (442)
Q Consensus 295 ~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~-~~~~~~~i~~~~~~~~~~~~~~ 373 (442)
+..... ++.+.+++.++++.++++..+...+.+++++++++++.+.|++. ++.. ..+..+.++++.+.....
T Consensus 253 ~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~---- 325 (391)
T 3h14_A 253 ERIAQN--MFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKA-GFTRIAPPDGAFYVYADVSDLTD---- 325 (391)
T ss_dssp HHHHHH--TTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCBCCCCBTTEEEEECTTTCS----
T ss_pred HHHHhh--hccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCeeEEEEEecCccCC----
Confidence 654333 23345777777777777632233567788899999999999887 5443 333345667777643110
Q ss_pred hHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 374 DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 374 ~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
+ ..++++.+++++||.+.++..+..+. .+..+|++++. +++|+++++++|++++++.
T Consensus 326 ~---~~~~~~~l~~~~gi~v~~g~~~~~~~--~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~ 382 (391)
T 3h14_A 326 D---SRAFAAEILEKAGVAVTPGLDFDPER--GAGTLRFSYAR--ATADIEEGLDRLEAFMQAR 382 (391)
T ss_dssp C---HHHHHHHHHHHHCEECEEGGGTCTTT--GGGEEEEECCS--CHHHHHHHHHHHHHHHHHC
T ss_pred C---HHHHHHHHHHHCCEEEcCchhhCCCC--CCCeEEEEecC--CHHHHHHHHHHHHHHHHHh
Confidence 1 23577766766699999987654311 12459999986 8899999999999988753
No 60
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.92 E-value=8.7e-24 Score=212.03 Aligned_cols=313 Identities=14% Similarity=0.097 Sum_probs=216.2
Q ss_pred CCeeEEEeecCCCC---CCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC-------CCcEEEEc
Q 013461 107 SGKEVVNFASANYL---GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG-------TPDSILYS 176 (442)
Q Consensus 107 ~G~~~id~~s~~~l---~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g-------~e~~i~~~ 176 (442)
+|+++|||+++++. .+..+|.+++++.+++++.... .|+......++++.+|++++ .+++++++
T Consensus 52 ~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~ 125 (427)
T 3dyd_A 52 PNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN------GYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTS 125 (427)
T ss_dssp TTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS------SCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEES
T ss_pred CCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC------CCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEec
Confidence 57899999888754 3557899999999999873211 12233345789999999988 35788888
Q ss_pred chHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC-------CHHHHHHHHHhhcccccc--------
Q 013461 177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKR-------- 241 (442)
Q Consensus 177 sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~~-------- 241 (442)
+|++|+..++.+++++||.|+++.++|..+...++..|.+++.++.+ |++++++.+++.+.....
T Consensus 126 g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG 205 (427)
T 3dyd_A 126 GCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCG 205 (427)
T ss_dssp SHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTC
T ss_pred CcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEECCCCCCC
Confidence 89999999999999999999999999999999999999998887753 666776665432211000
Q ss_pred ----------------ccccccc--------ccCCCccccccCCCCCceeEEEEeccccccCCC---cEEEcC-------
Q 013461 242 ----------------SNSFGVL--------GRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGS------- 287 (442)
Q Consensus 242 ----------------a~~~g~~--------G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~------- 287 (442)
.|++-++ +.+|........+..+...++++||||++|+.| ||++++
T Consensus 206 ~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~ 285 (427)
T 3dyd_A 206 SVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFG 285 (427)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSH
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhH
Confidence 1221111 111211111112222334588899999997766 998886
Q ss_pred HHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHH--hcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEec
Q 013461 288 ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL--EENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE 365 (442)
Q Consensus 288 ~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l--~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~ 365 (442)
+++++.+...... ..+.+++.++++.++++.. +...+.+++++++++++.+.|++++|+.+..+..+.++++.+.
T Consensus 286 ~~i~~~l~~~~~~---~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~ 362 (427)
T 3dyd_A 286 NEIRDGLVKLSQR---ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIE 362 (427)
T ss_dssp HHHHHHHHHHHHH---HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEEC
T ss_pred HHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecC
Confidence 4677766543211 2345777777777888742 2234577889999999999999888888765666778888774
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHh
Q 013461 366 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 438 (442)
Q Consensus 366 ~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~ 438 (442)
.... ++.....++++++++++||++.++..+.. +..+||++. +++++|++++++|++++++..
T Consensus 363 ~~~~---~~~~~~~~~~~~l~~~~gV~v~~g~~~~~-----~~~iRis~~--~~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 363 MEHF---PEFENDVEFTERLVAEQSVHCLPATCFEY-----PNFIRVVIT--VPEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp GGGC---TTCSSHHHHHHHHHHHHCEECEEGGGGTC-----TTEEEEESC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred Hhhc---CCCCCHHHHHHHHHHHCCEEEECCcccCC-----CCeEEEEEC--CCHHHHHHHHHHHHHHHHHhh
Confidence 2100 00001235777666667999999876532 356999986 699999999999999987654
No 61
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.92 E-value=2.4e-23 Score=203.89 Aligned_cols=290 Identities=10% Similarity=0.038 Sum_probs=209.4
Q ss_pred CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCC--CcEEEEcchHHHHHhh
Q 013461 108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--PDSILYSYGLSTMFSA 185 (442)
Q Consensus 108 G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~--e~~i~~~sG~~a~~~a 185 (442)
++++|||+++.. .++.+|++++++.++++.+. .+ ......++++++|+++|. ++++++++|++++..+
T Consensus 31 ~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~-~y--------~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~ 100 (363)
T 3ffh_A 31 LTKITKLSSNEN-PLGTSKKVAAIQANSSVETE-IY--------PDGWASSLRKEVADFYQLEEEELIFTAGVDELIELL 100 (363)
T ss_dssp CSCCEECSSCSC-TTCCCHHHHHHHHTCBSCCC-BC------------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHH
T ss_pred CCceEEccCCCC-CCCCCHHHHHHHHHHHHHhh-cC--------CCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHH
Confidence 468999988743 45568999999887665321 11 123357999999999995 5788888899999999
Q ss_pred hhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC-----CHHHHHHHHHhhcccccc-------------------
Q 013461 186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKR------------------- 241 (442)
Q Consensus 186 i~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~~------------------- 241 (442)
+.+++++||.|+++.++|.++...++..|.+++.++.+ |++++++.+++.+.....
T Consensus 101 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l 180 (363)
T 3ffh_A 101 TRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAF 180 (363)
T ss_dssp HHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred HHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999876 788888877543221100
Q ss_pred ---cc-ccccc-ccC------C--CccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCCceeccC
Q 013461 242 ---SN-SFGVL-GRS------G--RGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSA 305 (442)
Q Consensus 242 ---a~-~~g~~-G~~------g--~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~~~~~s~ 305 (442)
+. +.-++ .+. + .+.....+ ..+.+++++||||++|..| ||+++++++++.++..... .
T Consensus 181 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~----~ 254 (363)
T 3ffh_A 181 LDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVR--TYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRPP----F 254 (363)
T ss_dssp HTTSCTTSEEEEECTTGGGCSSCCCCCGGGGG--TCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTCCS----C
T ss_pred HHhCCCCcEEEEeCchHhhcCccccCHHHHhh--cCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhCCC----C
Confidence 11 11111 100 1 11111111 2345788999999998666 9999999999998876442 3
Q ss_pred CCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHH
Q 013461 306 SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWA 385 (442)
Q Consensus 306 s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~ 385 (442)
+.+++.++++.++++..+..++.+++++++++++.+.|++.+|+++. ++.++++++.++. + ..++.+.+
T Consensus 255 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~~-------~---~~~~~~~l 323 (363)
T 3ffh_A 255 NTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKLY-PANGNFVLIDLGI-------E---AGTIFSYL 323 (363)
T ss_dssp CCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEC-CCCSSEEEEECSS-------C---HHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCceEC-CCCCeEEEEECCC-------C---HHHHHHHH
Confidence 46888888888888644333567888899999999999885588876 3567888887742 1 23567654
Q ss_pred HHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHH
Q 013461 386 LKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 433 (442)
Q Consensus 386 L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~ 433 (442)
+ ++||.+.++..+.. +..+|++++ |++|+++++++|+++
T Consensus 324 ~-~~gi~v~~g~~~~~-----~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 324 E-KNGYITRSGAALGF-----PTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp H-HTTEECEETTTTTC-----TTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred H-HCCeEEEeCccCCC-----CCeEEEECC---CHHHHHHHHHHHHHh
Confidence 4 56999998766432 356999987 999999999999875
No 62
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.92 E-value=6.5e-24 Score=211.65 Aligned_cols=307 Identities=13% Similarity=0.086 Sum_probs=206.5
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC--------CCcEEEEcch
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------TPDSILYSYG 178 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g--------~e~~i~~~sG 178 (442)
+|+++|||+++.+ +++.+|.+++++ +++++...+ |+......++++.+|++++ .++++++++|
T Consensus 41 ~g~~~i~l~~~~~-~~~~~~~v~~a~-~~l~~~~~~-------y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 111 (409)
T 2gb3_A 41 RGVRIHHLNIGQP-DLKTPEVFFERI-YENKPEVVY-------YSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGG 111 (409)
T ss_dssp TTCEEEECSSCCC-CSCCCTHHHHHH-HHTCCSSCC-------CCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHH
T ss_pred cCCCEEeccCCCC-CCCCCHHHHHHH-HHHhcCCCC-------CCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCH
Confidence 5789999988775 566678999999 887652111 2222233567777777663 2578888899
Q ss_pred HHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCCC------HHHHHHHHHhhcccccc-----------
Q 013461 179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND------MDSLRNTLERVTADNKR----------- 241 (442)
Q Consensus 179 ~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~d------~~~Le~~l~~~~~~~~~----------- 241 (442)
++|+..++.+++++||.|+++.++|.++..+++..|.+++.++.++ +++|++.+++.+.....
T Consensus 112 t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~l~~~~~~v~~~~p~nptG~~~ 191 (409)
T 2gb3_A 112 SEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVY 191 (409)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCccHHHHHHhhCcCCeEEEECCCCCCCCCCc
Confidence 9999999999999999999999999999999999999999888652 45566555432110000
Q ss_pred -----------------------cccccccccCCCccccccCCCCCceeEEEEeccccccCCC---cEEEcCH-HhHHHH
Q 013461 242 -----------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSA-RVVDHQ 294 (442)
Q Consensus 242 -----------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~-~~i~~l 294 (442)
+++.+.++....+. ..++ .+.|++++||||++|+.| ||+++++ ++++.+
T Consensus 192 ~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~--~~~~--~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l 267 (409)
T 2gb3_A 192 GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA--LSIE--SDKVVVIDSVSKKFSACGARVGCLITRNEELISHA 267 (409)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG--GGSC--CTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc--cccC--CCCEEEEecchhccCCccceEEEEEECcHHHHHHH
Confidence 22221111000111 1111 356999999999998665 9999998 898887
Q ss_pred HhhCCceeccCCCcHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHhhccCCCcee-ecCCCCCEEEEEecCCCCCch
Q 013461 295 RLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSI-ASNPESPIVFLILEKSTGSMK 372 (442)
Q Consensus 295 ~~~~~~~~~s~s~~p~~aaaa~aal~~l~-~~~~~~~~l~~~~~~l~~~L~~~~g~~~-~~~~~~~i~~~~~~~~~~~~~ 372 (442)
+.....+. +.+++.++++.++++..+ ..++++++++++++++.+.|+++ |+++ ..+..+.++++.+..
T Consensus 268 ~~~~~~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~------ 337 (409)
T 2gb3_A 268 MKLAQGRL---APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPSGAFYITAELPV------ 337 (409)
T ss_dssp HHHHHHSC---CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSSEEEEECSS------
T ss_pred HHHHhccC---CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCeeEEEEEEeCC------
Confidence 65432222 457777777777775322 23456788899999999999887 8877 544445566666631
Q ss_pred hhHHHHHHHHHHHHHh-----CCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhhcc
Q 013461 373 NDLQLLEDIADWALKE-----DGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRDR 441 (442)
Q Consensus 373 ~~~~~~~~i~~~~L~~-----~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~~~ 441 (442)
.+ ..++.+.++++ +||.+.++..+.......+..+|++++ +|++|+++++++|+++++++.+.|
T Consensus 338 ~~---~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~~~ 406 (409)
T 2gb3_A 338 ED---AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMFCSSR 406 (409)
T ss_dssp SC---HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHHHC--
T ss_pred CC---HHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHhhhcc
Confidence 01 23577765544 499999876543210111356999998 799999999999999998775443
No 63
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.92 E-value=8.8e-24 Score=209.29 Aligned_cols=296 Identities=16% Similarity=0.158 Sum_probs=203.5
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh----CC----CcEEEEcch
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----PDSILYSYG 178 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~----g~----e~~i~~~sG 178 (442)
.|+++|||+++.+ .++.+|.+++++.+++++....+ +......++++.+|+++ |. ++++++++|
T Consensus 39 ~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y-------~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~ 110 (389)
T 1o4s_A 39 KGEDVINLTAGEP-DFPTPEPVVEEAVRFLQKGEVKY-------TDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGA 110 (389)
T ss_dssp TTCCCEECCCSSC-SSCCCHHHHHHHHHHHTTCCCCC-------CCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHH
T ss_pred cCCCEEEccCCCC-CCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCH
Confidence 4678999987764 45567999999999987632222 22222356666676665 63 467888888
Q ss_pred HHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC-------CHHHHHHHHHhhcccccc----------
Q 013461 179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKR---------- 241 (442)
Q Consensus 179 ~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~~---------- 241 (442)
++++..++.+++++||.|+++.++|.++...++..|.+++.++.+ |+++|++.+++.++....
T Consensus 111 t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~ 190 (389)
T 1o4s_A 111 KQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVV 190 (389)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCC
Confidence 999999999999999999999999999999999999999888754 567777766432211000
Q ss_pred ------------------------cccccccccCCCccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHH
Q 013461 242 ------------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQ 294 (442)
Q Consensus 242 ------------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l 294 (442)
+++.+.++.....+....+ ..++|++++||||++|+.| ||+++++++++.+
T Consensus 191 ~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~l~~~~~~~~~l 268 (389)
T 1o4s_A 191 YRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSE--GFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAV 268 (389)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCS--SSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCC--CCCcEEEEeechhhcCCcccceEEEEeCHHHHHHH
Confidence 2221111100001111100 1357999999999998665 9999999998887
Q ss_pred HhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh
Q 013461 295 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND 374 (442)
Q Consensus 295 ~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 374 (442)
+.....+ +.+.+++.++++.++++.. .++++++++++++++.+.|+++ |+++..+..+.++++.++ . +
T Consensus 269 ~~~~~~~--~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~-----~ 336 (389)
T 1o4s_A 269 SKIQSHT--TSCINTVAQYAALKALEVD--NSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKVR--G-----D 336 (389)
T ss_dssp HHHHHHH--TCSCCHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSBSSEEEEECS--S-----C
T ss_pred HHHhhhc--ccCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHhc-CCeeecCCcceEEEEeCC--C-----C
Confidence 6543222 2334667666666666432 4668889999999999999987 887765444556676663 0 1
Q ss_pred HHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 375 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 375 ~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
..++.+.+++++||.+.++..+.. +..+|++++. +++++++++++|++++
T Consensus 337 ---~~~l~~~l~~~~gi~v~~g~~f~~-----~~~~Ris~~~--~~~~l~~~l~~l~~~l 386 (389)
T 1o4s_A 337 ---DVKFCERLLEEKKVALVPGSAFLK-----PGFVRLSFAT--SIERLTEALDRIEDFL 386 (389)
T ss_dssp ---HHHHHHHHHHHHCEECEEGGGGTC-----TTEEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHCCEEEeCchhcCC-----CCeEEEEEeC--CHHHHHHHHHHHHHHH
Confidence 235777655456999998765432 3469999984 9999999999998765
No 64
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.92 E-value=2.1e-23 Score=208.11 Aligned_cols=308 Identities=14% Similarity=0.123 Sum_probs=205.4
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh----CC-----CcEEEEcc
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT-----PDSILYSY 177 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~----g~-----e~~i~~~s 177 (442)
+|+++|||+++. .+++.+|.+++++.+++++.+.. .|+......++++.+|+++ |. ++++++++
T Consensus 35 ~g~~~idl~~g~-~~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g 107 (412)
T 2x5d_A 35 RGEDIIDLSMGN-PDGPTPPHIVEKLCTVAQREDTH------GYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIG 107 (412)
T ss_dssp TTCCCEECSSCC-CCSCCCHHHHHHHHHTC---------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESC
T ss_pred cCCCEEecCCCC-CCCCCCHHHHHHHHHHHhCCCCC------CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCC
Confidence 578999998876 35567899999999888653211 1222223457777777777 73 47888888
Q ss_pred hHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCCC---H-HHHHHHHHhhcccccc------------
Q 013461 178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND---M-DSLRNTLERVTADNKR------------ 241 (442)
Q Consensus 178 G~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~d---~-~~Le~~l~~~~~~~~~------------ 241 (442)
|++++..++.+++++||.|+++.++|.++...++..|.+++.++.++ . -+++++.+...+..+.
T Consensus 108 ~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~ 187 (412)
T 2x5d_A 108 SKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQ 187 (412)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCC
T ss_pred hHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCC
Confidence 99999999999999999999999999999999999999998888652 1 2344443332222111
Q ss_pred -------------------------ccccccc-ccCCCccccccCCC-CCceeEEEEeccccccCCC---cEEEcCHHhH
Q 013461 242 -------------------------SNSFGVL-GRSGRGLTEHCGVP-VDKIDIVTAAMGHALATEG---GFCTGSARVV 291 (442)
Q Consensus 242 -------------------------a~~~g~~-G~~g~g~~~~~~v~-~~~~diii~S~sK~lg~~G---G~v~g~~~~i 291 (442)
+|+.+.+ |+....+.. ++ ..++|++++|+||++|+.| ||++++++++
T Consensus 188 ~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~---~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~ 264 (412)
T 2x5d_A 188 CVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQ---VPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELV 264 (412)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGG---STTGGGTEEEEEECC-CCSCTTSCCEEEEECHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhh---ccCccCcEEEEecCccccCCcccceEEEEcCHHHH
Confidence 2221111 111111111 11 1357899999999998666 9999999999
Q ss_pred HHHHhhCCceeccCCCcHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCC
Q 013461 292 DHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGS 370 (442)
Q Consensus 292 ~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~ 370 (442)
+.++...... +.+.+++.++++.++++..++ .++++++++++++++.+.|++. |+++..+..+.++++.++...+
T Consensus 265 ~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~- 340 (412)
T 2x5d_A 265 SALARIKSYH--DYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA-GWMVENPKASMYVWAKIPEPYA- 340 (412)
T ss_dssp HHHHHHHHHH--CCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCSBSSEEEEECCTTTG-
T ss_pred HHHHHHHhhh--ccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCeeeEEEEEcCCccC-
Confidence 8886543222 234577777777777764322 3457788899999999999887 7777644345577777742110
Q ss_pred chhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 371 MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 371 ~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
. ....++++.+++++||.+.++..+... .+..+||+++. +++++++++++|++++++.
T Consensus 341 -~---~~~~~~~~~l~~~~gi~v~~g~~f~~~---~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~ 398 (412)
T 2x5d_A 341 -H---LGSLEFAKKLLQDAKVSVSPGIGFGDY---GDDHVRFALIE--NRDRLRQAVRGIKAMFRAD 398 (412)
T ss_dssp -G---GCHHHHHHHHHHHHCEECEEGGGGCGG---GTTEEEEECCS--CHHHHHHHHHHHHHHHHHT
T ss_pred -C---CCHHHHHHHHHHHCCEEEeCchhhCCC---CCCeEEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence 0 012367776666569999988654311 12469999996 8999999999999998764
No 65
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.92 E-value=3.2e-23 Score=206.68 Aligned_cols=319 Identities=16% Similarity=0.150 Sum_probs=216.9
Q ss_pred ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccC--cHHHHHHHHHHHhhhCC---CcEEEEcchHH
Q 013461 106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGT--IDVHLDCEARIAKFLGT---PDSILYSYGLS 180 (442)
Q Consensus 106 ~~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~--~~~~~~le~~lA~~~g~---e~~i~~~sG~~ 180 (442)
.+|+++++|.++.+ + ..+|.+++++.++++++..........|+. .+...++++.+|+++|. ++++++++|++
T Consensus 24 ~~g~~~i~l~~~~~-~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~ 101 (420)
T 1t3i_A 24 INGHPLVYLDNAAT-S-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATE 101 (420)
T ss_dssp ETTEECEECBTTTC-C-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHH
T ss_pred cCCCceEEecCCcc-C-CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHH
Confidence 46889999988775 3 457999999999998854221111223443 46788999999999998 67888899999
Q ss_pred HHHhhhhhh----ccCCCEEEeCCCchHHH----HHHHHhcCCeEEEecC-----CCHHHHHHHHHhhcccccc------
Q 013461 181 TMFSAIPCF----CKKGDLIVADEGVHWGI----QNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKR------ 241 (442)
Q Consensus 181 a~~~ai~a~----~~~gd~Vi~~~~~h~s~----~~~~~l~g~~v~~~~~-----~d~~~Le~~l~~~~~~~~~------ 241 (442)
|+..++.++ .++||.|+++.+.|.+. ...++..|.+++.++. .|+++|++.+++.+.-...
T Consensus 102 a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~np 181 (420)
T 1t3i_A 102 AINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNT 181 (420)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTT
T ss_pred HHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCCCceEEEEeCCccc
Confidence 999999999 89999999999999884 4556677899988876 3678888777542211000
Q ss_pred ---------------ccccccccc--CCCccccccCCCCCceeEEEEeccccccCCC-cEEEcCHHhHHHHHhhCCc---
Q 013461 242 ---------------SNSFGVLGR--SGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLSSSG--- 300 (442)
Q Consensus 242 ---------------a~~~g~~G~--~g~g~~~~~~v~~~~~diii~S~sK~lg~~G-G~v~g~~~~i~~l~~~~~~--- 300 (442)
.|+.-++-+ .+.|.. ..++...+.|+++.|++|.+|..| |++++++++++.++....+
T Consensus 182 tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~-~~~~~~~~~di~~~s~sK~~~~~g~G~~~~~~~~~~~~~~~~~~~~~ 260 (420)
T 1t3i_A 182 LGCVNPAEEIAQLAHQAGAKVLVDACQSAPHY-PLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEM 260 (420)
T ss_dssp TCBBCCHHHHHHHHHHTTCEEEEECTTTTTTS-CCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHSCCCSCSTTS
T ss_pred ccCcCCHHHHHHHHHHcCCEEEEEhhhccCCc-cCchhhcCCCEEEEehhhhcCCCceEEEEEchHHHhhcCceecCCCc
Confidence 122111111 111111 011111246899999999888765 9999999998877543221
Q ss_pred ---------------eeccCCCcHHHHHHHH-HHHHHHhc--ChHHHHHHHHHHHHHHHhhccCCCceeecCC-----CC
Q 013461 301 ---------------YVFSASLPPYLASAAI-TAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNP-----ES 357 (442)
Q Consensus 301 ---------------~~~s~s~~p~~aaaa~-aal~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~-----~~ 357 (442)
+.+..+.+++.+++++ ++++.+++ .+.+.++++++.+++.+.|++++|+++..+. .+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~ 340 (420)
T 1t3i_A 261 IAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRA 340 (420)
T ss_dssp EEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBC
T ss_pred cccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccC
Confidence 1132333444444444 36777653 3567889999999999999988788876543 37
Q ss_pred CEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccc---cCCCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 358 PIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---KCRLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 358 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~---~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
+++.+.++.. + ..++.+ .|.++||.+.++..+..+ ....+..+|++++..+|++|+++++++|++++
T Consensus 341 ~~~~~~~~~~------~---~~~~~~-~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 410 (420)
T 1t3i_A 341 ALASFNVAGL------H---ASDVAT-MVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATI 410 (420)
T ss_dssp SEEEEEETTB------C---HHHHHH-HHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCC------C---HHHHHH-HHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 7888877420 1 225665 466779999887543211 00013569999999899999999999999988
Q ss_pred HHH
Q 013461 435 AVV 437 (442)
Q Consensus 435 ~~~ 437 (442)
+++
T Consensus 411 ~~~ 413 (420)
T 1t3i_A 411 RFF 413 (420)
T ss_dssp HHT
T ss_pred HHh
Confidence 765
No 66
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.92 E-value=7.9e-23 Score=202.30 Aligned_cols=317 Identities=13% Similarity=0.051 Sum_probs=200.8
Q ss_pred ecCCCCeEE-ECCe-----eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHH-HHHHHHhhh--
Q 013461 97 ESAAGPHTI-ISGK-----EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLD-CEARIAKFL-- 167 (442)
Q Consensus 97 ~~~~g~~~~-~~G~-----~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~-le~~lA~~~-- 167 (442)
.++.|+++| .+|+ ++|||++++. +++.+|++.+++.+++++...++ +.. ..+ +++.+|+++
T Consensus 10 ~~~~~~~~~d~~~~~~~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y-------~~~--~~~~lr~~la~~l~~ 79 (390)
T 1d2f_A 10 RHGTWCTQWDYVADRFGTADLLPFTISDM-DFATAPCIIEALNQRLMHGVFGY-------SRW--KNDEFLAAIAHWFST 79 (390)
T ss_dssp --------------------CEECCSSSC-SSCCCHHHHHHHHHHHTTCCCCC-------CCS--CCHHHHHHHHHHHHH
T ss_pred ccCCCccchhhhccccCCCCeeEeeecCC-CCCCCHHHHHHHHHHHhCCCCCC-------CCC--ChHHHHHHHHHHHHH
Confidence 457889999 4776 7999977653 66678999999999986511111 111 234 666666654
Q ss_pred --C----CCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC--------CCHHHHHHHHH
Q 013461 168 --G----TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRNTLE 233 (442)
Q Consensus 168 --g----~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~--------~d~~~Le~~l~ 233 (442)
| .++++++++|++++..++.+++++||.|+++.+.|.++...++..|.+++.++. .|+++|++.++
T Consensus 80 ~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~ 159 (390)
T 1d2f_A 80 QHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLA 159 (390)
T ss_dssp HSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHT
T ss_pred hcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhc
Confidence 5 346778888889999999999999999999999999999999999999888774 47888988886
Q ss_pred hhcccccc-------------------------cccccccc--------cCCCccccccCCCCCceeEEEEeccccccCC
Q 013461 234 RVTADNKR-------------------------SNSFGVLG--------RSGRGLTEHCGVPVDKIDIVTAAMGHALATE 280 (442)
Q Consensus 234 ~~~~~~~~-------------------------a~~~g~~G--------~~g~g~~~~~~v~~~~~diii~S~sK~lg~~ 280 (442)
+...+... .|+.-++- .+|........+.++-.|. +.||||++|+.
T Consensus 160 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~ 238 (390)
T 1d2f_A 160 KPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIP 238 (390)
T ss_dssp STTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCG
T ss_pred cCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhccc
Confidence 42111000 11211110 0111111112222221266 99999999866
Q ss_pred C---cEEEcC-HHhHHHHHhhCC-ceeccCCCcHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHhhcc-CCCceeec
Q 013461 281 G---GFCTGS-ARVVDHQRLSSS-GYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSD-IHGLSIAS 353 (442)
Q Consensus 281 G---G~v~g~-~~~i~~l~~~~~-~~~~s~s~~p~~aaaa~aal~~l~-~~~~~~~~l~~~~~~l~~~L~~-~~g~~~~~ 353 (442)
| ||++++ +++++.++.... .+.++ +.+++.++++.++++..+ ..++.+++++++++++.+.|++ ++++++..
T Consensus 239 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 317 (390)
T 1d2f_A 239 ALTGAYGIIENSSSRDAYLSALKGRDGLS-SPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQI 317 (390)
T ss_dssp GGCCEEEEECSHHHHHHHHHHHHTTSCCC-SCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred ChhheEEEECCHHHHHHHHHHHhhhcccC-CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEec
Confidence 5 899875 788887765432 22232 356777777777777532 2345677888999999999987 67887764
Q ss_pred CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHH
Q 013461 354 NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 433 (442)
Q Consensus 354 ~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~ 433 (442)
+..+.++++.++.. + .+ ..++.+.+++++||.+.++..+.. . .+..+||+++. +++++++++++|+++
T Consensus 318 ~~~~~~~~~~~~~~-~---~~---~~~l~~~l~~~~gi~v~~g~~f~~-~--~~~~~Ris~~~--~~~~l~~~l~~l~~~ 385 (390)
T 1d2f_A 318 PQSTYLAWLDLRPL-N---ID---DNALQKALIEQEKVAIMPGYTYGE-E--GRGFVRLNAGC--PRSKLEKGVAGLINA 385 (390)
T ss_dssp CSBCSEEEEECGGG-C---CC---HHHHHHHHHHTTCEECEEGGGGCG-G--GTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEcccc-C---CC---HHHHHHHHHHHcCEEeeCccccCC-C--CCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 43344556776421 0 01 235777655467999998765431 0 13469999996 689999999999998
Q ss_pred HHHH
Q 013461 434 SAVV 437 (442)
Q Consensus 434 ~~~~ 437 (442)
+++.
T Consensus 386 l~~~ 389 (390)
T 1d2f_A 386 IRAV 389 (390)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8654
No 67
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.92 E-value=8.1e-24 Score=212.44 Aligned_cols=304 Identities=13% Similarity=0.143 Sum_probs=204.9
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh----CC--CcEEEEcchHH
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT--PDSILYSYGLS 180 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~----g~--e~~i~~~sG~~ 180 (442)
+|+++|||+++++. +..+|.|++++.+++++++...+. ..|+....+.+|++.+|+++ +. +++++++++++
T Consensus 54 ~~~~~i~l~~~~~~-~~~~~~v~~a~~~~~~~~~~~~~~--~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~ 130 (432)
T 3ei9_A 54 PDAQVISLGIGDTT-EPIPEVITSAMAKKAHELSTIEGY--SGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKC 130 (432)
T ss_dssp TTCCCEECSSCCCC-SCCCHHHHHHHHHHHHHTTSTTTC--CCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHH
T ss_pred CCCCeEEccCCCCC-CCCCHHHHHHHHHHHhcccccCCc--cCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHH
Confidence 57899999999876 778999999999999987643321 13444455678899999886 43 34555555567
Q ss_pred HHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCC------------eEEEecCCC------------------------
Q 013461 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRS------------TVVYFKHND------------------------ 224 (442)
Q Consensus 181 a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~------------~v~~~~~~d------------------------ 224 (442)
++.. +.+++++||.|+++.++|.++..+++..+. ++++++.++
T Consensus 131 al~~-l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~N 209 (432)
T 3ei9_A 131 DISR-LQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTDIIFFCSPNN 209 (432)
T ss_dssp HHHH-HHHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGGCCCCSEEEEESSCT
T ss_pred HHHH-HHHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhhCCCCCEEEEeCCCC
Confidence 7665 678889999999999999999888877663 445544321
Q ss_pred -------HHHHHHHHHhhcccccc-----cccccccccCCCccccccCCCCCceeEEEEeccccccCCC---cEEEcCHH
Q 013461 225 -------MDSLRNTLERVTADNKR-----SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSAR 289 (442)
Q Consensus 225 -------~~~Le~~l~~~~~~~~~-----a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~ 289 (442)
+++++++++-..+.... +|+.++.+..+.++....+ ..+++|+++||||++|+.| ||++++++
T Consensus 210 PtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~ 287 (432)
T 3ei9_A 210 PTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPG--AEEVAMETASFSNYAGFTGVRLGWTVIPKK 287 (432)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTT--GGGTEEEEEESHHHHCTTTTCCEEEECCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCC--CCCeEEEEecchhccCCcccceEEEEEChH
Confidence 23333332211110000 4554444433333333222 1356899999999999777 99999988
Q ss_pred h--------HHHHHhhCCceeccCCCcHHHHHHHHHHHHH--HhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCE
Q 013461 290 V--------VDHQRLSSSGYVFSASLPPYLASAAITAIDV--LEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPI 359 (442)
Q Consensus 290 ~--------i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~--l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i 359 (442)
+ ++.+.... ...+ .+.+++.++++.++++. .+..++++++++++++++.+.|.++ |+++..+..+++
T Consensus 288 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 364 (432)
T 3ei9_A 288 LLYSDGFPVAKDFNRII-CTCF-NGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVYGGKNAPY 364 (432)
T ss_dssp CBCTTSCBHHHHHHHHH-HHSC-CCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEECSSSSE
T ss_pred HhhcchHHHHHHHHHHh-cccc-CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-CceecCCCcceE
Confidence 7 66654332 1122 23466666666666632 2233567889999999999999987 888776567888
Q ss_pred EEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHH
Q 013461 360 VFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 433 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~ 433 (442)
+++.++.. + ..++++.+++++||++.++..+... . +..+||++. .++++|++++++|++-
T Consensus 365 ~~~~~~~~------~---~~~~~~~ll~~~gv~v~~g~~f~~~-~--~~~iRis~~--~~~e~l~~~l~rl~~~ 424 (432)
T 3ei9_A 365 VWVHFPNQ------S---SWDVFAEILEKTHVVTTPGSGFGPG-G--EGFVRVSAF--GHRENILEACRRFKQL 424 (432)
T ss_dssp EEEECTTS------C---HHHHHHHHHHHHCEECEEGGGGCGG-G--TTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred EEEECCCC------C---HHHHHHHHHHHCCEEEeCchHhCCC-C--CCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 88888521 1 2356666677679999998765421 1 245999975 5999999999999864
No 68
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.92 E-value=3.7e-23 Score=204.56 Aligned_cols=302 Identities=14% Similarity=0.157 Sum_probs=205.8
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh----C----CCc-EEEEcchHH
Q 013461 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G----TPD-SILYSYGLS 180 (442)
Q Consensus 110 ~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~----g----~e~-~i~~~sG~~ 180 (442)
++|||+++.. .++.+|++.+++.+++++...++ +......++++.+|+++ | .++ ++++++|++
T Consensus 27 ~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y-------~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~ 98 (389)
T 1gd9_A 27 DVISLGIGEP-DFDTPQHIKEYAKEALDKGLTHY-------GPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQ 98 (389)
T ss_dssp SCEECCCCSC-SSCCCHHHHHHHHHHHHTTCCSC-------CCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTH
T ss_pred CeEecCCCCC-CCCCCHHHHHHHHHHHhCCCCCC-------CCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHH
Confidence 6799987753 55568999999999997632111 11122356666666665 7 356 888889999
Q ss_pred HHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC-------CHHHHHHHHHhhccccc-------c-----
Q 013461 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNK-------R----- 241 (442)
Q Consensus 181 a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~-------~----- 241 (442)
++..++.+++++||.|+++.++|.++...++..|.+++.++.+ |+++|++.+++...... .
T Consensus 99 a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~ 178 (389)
T 1gd9_A 99 AFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLT 178 (389)
T ss_dssp HHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCC
Confidence 9999999999999999999999999999999999998887742 67788777654211100 0
Q ss_pred ----------------------cccccccccC-CCccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHHH
Q 013461 242 ----------------------SNSFGVLGRS-GRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQR 295 (442)
Q Consensus 242 ----------------------a~~~g~~G~~-g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~ 295 (442)
+|+.+.++.. ...+....+ ..+.|++++|+||++|+.| ||+++++++++.++
T Consensus 179 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~ 256 (389)
T 1gd9_A 179 KKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDG--MFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMV 256 (389)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT--CGGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccC--CCCCEEEEecChhhcCCcccceEEEEECHHHHHHHH
Confidence 2222211100 111111111 1357999999999998666 99999999999887
Q ss_pred hhCCceeccCCCcHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCch
Q 013461 296 LSSSGYVFSASLPPYLASAAITAIDVLEE---NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMK 372 (442)
Q Consensus 296 ~~~~~~~~s~s~~p~~aaaa~aal~~l~~---~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 372 (442)
.....+. .+.+++.++++.++++..+. .++++++++++++++.+.|+++ |+++..+..+.++++.++.. +
T Consensus 257 ~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~--- 329 (389)
T 1gd9_A 257 KFQMYNA--TCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDT-G--- 329 (389)
T ss_dssp HHHTTTT--CSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECCBCGGG-T---
T ss_pred HHHhhhc--cCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEeccCC-C---
Confidence 6533322 33467777777777764332 3457788899999999999987 88776543455566665320 0
Q ss_pred hhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 373 NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 373 ~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
.+ ..++++.+++++||.+.++..+... .+..+|++++. +++++++++++|++++++
T Consensus 330 ~~---~~~~~~~l~~~~gi~v~~g~~~~~~---~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 330 LT---SKKFSELMLKEARVAVVPGSAFGKA---GEGYVRISYAT--AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp CC---HHHHHHHHHHHTCEECEEGGGGCGG---GTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHhCCEEEeCchhhCCC---CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 01 2367776554679999987654311 12459999985 899999999999988765
No 69
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.92 E-value=6.8e-24 Score=214.07 Aligned_cols=309 Identities=10% Similarity=0.088 Sum_probs=208.2
Q ss_pred ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh----C--CCcEEEEcchH
Q 013461 106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G--TPDSILYSYGL 179 (442)
Q Consensus 106 ~~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~----g--~e~~i~~~sG~ 179 (442)
.+|+++|||++++ .++..+|.|++++.+++++++.... ...|+....+.+|++++|+++ + .++++++++++
T Consensus 66 ~~~~~~i~l~~g~-~~~~~~~~v~~a~~~~~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~ 142 (449)
T 3qgu_A 66 NPDAKIISLGIGD-TTEPLPKYIADAMAKAAAGLATREG--YSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSK 142 (449)
T ss_dssp CTTCCCEECSSCC-CCCCCCHHHHHHHHHHHHGGGGSCC--CCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCEEEeeCCC-CCCCCCHHHHHHHHHHHHhhccccC--CCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHH
Confidence 3688999998874 6777899999999999997643111 123444455689999999998 4 34566666777
Q ss_pred HHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCe----------EEEecCCCHH-----------------------
Q 013461 180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRST----------VVYFKHNDMD----------------------- 226 (442)
Q Consensus 180 ~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~----------v~~~~~~d~~----------------------- 226 (442)
+++..+ .+++++||.|+++.++|.++..+++..|.+ ++.+++++.+
T Consensus 143 ~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NP 221 (449)
T 3qgu_A 143 CDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNP 221 (449)
T ss_dssp HHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTT
T ss_pred HHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHcCCCCEEEEeCCCCC
Confidence 888877 888999999999999999999999988887 8877765322
Q ss_pred --------HHHHHHHhhcccccc-----cccccccccCCCccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHh
Q 013461 227 --------SLRNTLERVTADNKR-----SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARV 290 (442)
Q Consensus 227 --------~Le~~l~~~~~~~~~-----a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~ 290 (442)
+++++.+-..+.... +|+.+..+..+......++. ..+++++++||||++|+.| ||+++++++
T Consensus 222 tG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 300 (449)
T 3qgu_A 222 TGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPG-ADEVAIETCSFSKYAGFTGVRLGWTVVPKAL 300 (449)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTT-GGGTEEEEEECSGGGTCTTCCCEEEECCTTC
T ss_pred CCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccC-CCCcEEEEecchhhcCCccceeEEEecCHHH
Confidence 222222111000000 33332222111111112211 1367899999999999777 999999988
Q ss_pred HH--------HHHhhCCceeccCCCcHHHHHHHHHHHHH--HhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEE
Q 013461 291 VD--------HQRLSSSGYVFSASLPPYLASAAITAIDV--LEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIV 360 (442)
Q Consensus 291 i~--------~l~~~~~~~~~s~s~~p~~aaaa~aal~~--l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~ 360 (442)
++ .+... ....++ +.+++.++++.++++. .+..++++++++++++++.+.|+++ |+++..+..++++
T Consensus 301 ~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~ 377 (449)
T 3qgu_A 301 KYANGEPVHADWNRV-MTTCFN-GASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFSVYGGDDAPYI 377 (449)
T ss_dssp BCTTSCBHHHHHHHH-HHHSCC-CCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEESSSSSEE
T ss_pred HhhhhhhHHHHHHHH-hhcccC-CCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCeeEE
Confidence 75 22211 112222 3467777777777654 2234567889999999999999987 8887765568888
Q ss_pred EEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 361 FLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
++.++ .. + ..++++.++++.||++.++..+.... +..+||++. .|++||++++++|++++++
T Consensus 378 ~~~~~-~~-----~---~~~~~~~l~~~~gI~v~pg~~f~~~~---~~~iRis~~--~~~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 378 WVGFP-GK-----P---SWDVFAEILERCNIVTTPGSGYGPAG---EGFVRASAF--GSRENILEAVRRFKEAYGK 439 (449)
T ss_dssp EEECT-TS-----C---HHHHHHHHHHHHCEECEEGGGGCGGG---TTEEEEECC--SCHHHHHHHHHHHHHHHC-
T ss_pred EEECC-CC-----C---HHHHHHHHHHHCCEEEecchHhCCCC---CCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 88874 11 1 23577767766699999987653211 256999965 4999999999999987643
No 70
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.92 E-value=2.8e-23 Score=208.16 Aligned_cols=315 Identities=14% Similarity=0.164 Sum_probs=212.8
Q ss_pred CeeEEEeecCC--CCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh----CC-----CcEEEEc
Q 013461 108 GKEVVNFASAN--YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT-----PDSILYS 176 (442)
Q Consensus 108 G~~~id~~s~~--~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~----g~-----e~~i~~~ 176 (442)
++++|||+++. +.+ .++|++.+++.+++++++.... .|+......++++.+|+++ |. +++++++
T Consensus 42 ~~~~idl~~g~~~~~~-~~~~~v~~a~~~~~~~~~~~~~----~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~ 116 (425)
T 1vp4_A 42 DKDAISFGGGVPDPET-FPRKELAEIAKEIIEKEYHYTL----QYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTV 116 (425)
T ss_dssp STTCEECCCCSCCGGG-SCHHHHHHHHHHHHHHSHHHHT----SCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEE
T ss_pred CCCceeCCCCCCCccc-CCHHHHHHHHHHHHhhcchhhc----CCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEec
Confidence 35689997763 332 2568999999999976321001 1222223356777777776 73 3567777
Q ss_pred chHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC----CCHHHHHHHHHhh--------cccc-cc--
Q 013461 177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH----NDMDSLRNTLERV--------TADN-KR-- 241 (442)
Q Consensus 177 sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~----~d~~~Le~~l~~~--------~~~~-~~-- 241 (442)
+|++++..++.+++++||.|+++.++|.++...++..|++++.++. .|+++|++.+++. ..-. ..
T Consensus 117 G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~ 196 (425)
T 1vp4_A 117 GSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSN 196 (425)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECS
T ss_pred cHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCC
Confidence 7789999999999999999999999999999999999999988875 3788999888751 1110 00
Q ss_pred ----------------------ccccccccc--------CCCccccccCCCCCceeEEEEeccccccCCC---cEEEcCH
Q 013461 242 ----------------------SNSFGVLGR--------SGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSA 288 (442)
Q Consensus 242 ----------------------a~~~g~~G~--------~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~ 288 (442)
.|++-++-+ .|........+++.+.+++++||||++| .| ||+++++
T Consensus 197 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~ 275 (425)
T 1vp4_A 197 FHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAGSK 275 (425)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEECCH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccceEEEeeCH
Confidence 111111100 1111111111122356899999999998 66 9999999
Q ss_pred HhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHH---hcChHHHHHHHHHHHHHHHhhccC-C---CceeecCCCCCEEE
Q 013461 289 RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL---EENPDLITKLKKNTAILRTGLSDI-H---GLSIASNPESPIVF 361 (442)
Q Consensus 289 ~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l---~~~~~~~~~l~~~~~~l~~~L~~~-~---g~~~~~~~~~~i~~ 361 (442)
++++.++.....+.++ .+++.++++.++++.. +.....+++++++++++.+.|++. + |+++..+..+.+++
T Consensus 276 ~~~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~ 353 (425)
T 1vp4_A 276 EFIRKIVQAKQSADLC--SPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIW 353 (425)
T ss_dssp HHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEE
T ss_pred HHHHHHHHHhhhhcCC--CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEE
Confidence 9998887543333333 4777777777888753 234567888889999999999864 4 57776555677888
Q ss_pred EEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhhcc
Q 013461 362 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRDR 441 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~~~ 441 (442)
+.++.... ..++++.++++ ||.+.++..+.... ..+..+||+++.. |++|+++++++|+++++++.+++
T Consensus 354 ~~~~~~~~--------~~~l~~~l~~~-gi~v~~g~~f~~~~-~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~~~~~ 422 (425)
T 1vp4_A 354 LTLPEGFD--------TWEMFEYAKRK-KVFYVPGRVFKVYD-EPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEYGKEK 422 (425)
T ss_dssp EECCTTCC--------TTTTHHHHHHH-TEECEEGGGGCTTC-CCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEcCCCCC--------HHHHHHHHHHC-CCEEECchhhcCCC-CCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHHhhc
Confidence 88753111 12466666655 99999876543211 1135699999874 89999999999999998776553
No 71
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.92 E-value=1.9e-23 Score=207.41 Aligned_cols=313 Identities=13% Similarity=0.134 Sum_probs=211.8
Q ss_pred CeeEEEeecCC--CCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCC--CcEEEEcchHHHHH
Q 013461 108 GKEVVNFASAN--YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--PDSILYSYGLSTMF 183 (442)
Q Consensus 108 G~~~id~~s~~--~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~--e~~i~~~sG~~a~~ 183 (442)
++++|||+++. +.+ .++|++.+++.+++++++... ..|+......++++.+|+++|. ++++++++|++++.
T Consensus 31 ~~~~i~l~~g~~~~~~-~~~~~v~~a~~~~~~~~~~~~----~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~ 105 (397)
T 2zyj_A 31 RPGILSFAGGLPAPEL-FPKEEAAEAAARILREKGEVA----LQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALD 105 (397)
T ss_dssp STTCEEESSCCCCGGG-CCHHHHHHHHHHHHHHHHHHH----TSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHH
T ss_pred CCCceecCCCCCCchh-CCHHHHHHHHHHHHHhcchhh----hCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHH
Confidence 45689997663 332 246899999999988643110 1122223457899999999985 46677777789999
Q ss_pred hhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC----CHHHHHHHHHhhccccc--c----------------
Q 013461 184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNK--R---------------- 241 (442)
Q Consensus 184 ~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~----d~~~Le~~l~~~~~~~~--~---------------- 241 (442)
.++.+++++||.|+++.++|.++...++..|.+++.++.+ |+++|++.+++...+.. .
T Consensus 106 ~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l 185 (397)
T 2zyj_A 106 LVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPAR 185 (397)
T ss_dssp HHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHH
T ss_pred HHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCCCCCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHH
Confidence 9999999999999999999999999999999998888753 78899988875211111 0
Q ss_pred --------ccccccccc--------CCCccccccCCCCC---ceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCC
Q 013461 242 --------SNSFGVLGR--------SGRGLTEHCGVPVD---KIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSS 299 (442)
Q Consensus 242 --------a~~~g~~G~--------~g~g~~~~~~v~~~---~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~ 299 (442)
.|+.-++-+ +|........+..+ +.+++++|+||++| +| ||+++++++++.++....
T Consensus 186 ~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~ 264 (397)
T 2zyj_A 186 KRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQ 264 (397)
T ss_dssp HHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecCHHHHHHHHHHHH
Confidence 111111100 11110011111112 44689999999998 55 999999999988875433
Q ss_pred ceeccCCCcHHHHHHHHHHHHHH--hcChHHHHHHHHHHHHHHHhhcc-CC-CceeecCCCCCEEEEEecCCCCCchhhH
Q 013461 300 GYVFSASLPPYLASAAITAIDVL--EENPDLITKLKKNTAILRTGLSD-IH-GLSIASNPESPIVFLILEKSTGSMKNDL 375 (442)
Q Consensus 300 ~~~~s~s~~p~~aaaa~aal~~l--~~~~~~~~~l~~~~~~l~~~L~~-~~-g~~~~~~~~~~i~~~~~~~~~~~~~~~~ 375 (442)
.+.+++ +++.++++.++++.. +..++.+++++++++++.+.|++ ++ |+++..+..+.++++.++... +
T Consensus 265 ~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~~~-----~- 336 (397)
T 2zyj_A 265 GADLHT--PMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKGL-----S- 336 (397)
T ss_dssp HHHSSC--CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECSTTC-----C-
T ss_pred hhcCCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCCCC-----C-
Confidence 333333 677777777777543 22345677788889999999976 45 577765556778888874311 1
Q ss_pred HHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhh
Q 013461 376 QLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 376 ~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
..++.+.+++ +||.+.++..+.... ..+..+||+++.. |++|+++++++|++++++++.
T Consensus 337 --~~~~~~~l~~-~gi~v~~g~~f~~~~-~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~~ 395 (397)
T 2zyj_A 337 --AEGLFRRALE-ENVAFVPGGPFFANG-GGENTLRLSYATL-DREGIAEGVRRLGRALKGLLA 395 (397)
T ss_dssp --HHHHHHHHHH-TTEEEEESGGGCTTS-CCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHH-CCCEEechHHhcCCC-CCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 2357776555 599999876543211 1135699999874 899999999999999987763
No 72
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.91 E-value=6.6e-23 Score=203.36 Aligned_cols=319 Identities=12% Similarity=0.098 Sum_probs=213.2
Q ss_pred ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCC--ccCccccCcHHHHHHHHHHHhhhCC---CcEEEEcchHH
Q 013461 106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSC--GPRGFYGTIDVHLDCEARIAKFLGT---PDSILYSYGLS 180 (442)
Q Consensus 106 ~~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~--~~~~~~g~~~~~~~le~~lA~~~g~---e~~i~~~sG~~ 180 (442)
++|+++++|..+.. + ..+|.+++++.++++++..... .+...|+..+...++++.+|+++|. ++++++++|++
T Consensus 19 ~~g~~~i~l~~~~~-~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~ 96 (406)
T 1kmj_A 19 VNGLPLAYLDSAAS-A-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTE 96 (406)
T ss_dssp ETTEECEECCTTTC-C-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHH
T ss_pred cCCCceEEecCCcc-C-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhH
Confidence 36777787765543 3 3578999999999987531111 1111234567789999999999997 46777788889
Q ss_pred HHHhhhhhh----ccCCCEEEeCCCchHHHHH----HHHhcCCeEEEecCC-----CHHHHHHHHHhhcccccc------
Q 013461 181 TMFSAIPCF----CKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKR------ 241 (442)
Q Consensus 181 a~~~ai~a~----~~~gd~Vi~~~~~h~s~~~----~~~l~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~~------ 241 (442)
|+..++.++ .++||.|+++.+.|.+... .++..|.+++.++.+ |+++|++.+++.+.....
T Consensus 97 a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~np 176 (406)
T 1kmj_A 97 GINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNV 176 (406)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTT
T ss_pred HHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhccCCeEEEEeCCCcc
Confidence 999999999 8999999999998876543 356678899888763 678888877542211000
Q ss_pred ---------------ccccccccc--CCCccccccCCCCCceeEEEEeccccccCCC-cEEEcCHHhHHHHHhhCCc---
Q 013461 242 ---------------SNSFGVLGR--SGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLSSSG--- 300 (442)
Q Consensus 242 ---------------a~~~g~~G~--~g~g~~~~~~v~~~~~diii~S~sK~lg~~G-G~v~g~~~~i~~l~~~~~~--- 300 (442)
.|++-++-+ .+.|.. ..++...+.|+++.|++|.+|..| ||+++++++++.++....+
T Consensus 177 tG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~-~~~~~~~~~d~~~~s~~K~~g~~G~G~~~~~~~~~~~~~~~~~~~~~ 255 (406)
T 1kmj_A 177 LGTENPLAEMITLAHQHGAKVLVDGAQAVMHH-PVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSM 255 (406)
T ss_dssp TCCBCCHHHHHHHHHHTTCEEEEECTTTTTTS-CCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHCCCSSCSTTS
T ss_pred ccCcCCHHHHHHHHHHcCCEEEEEchhhcCCC-CCcccccCCCEEEEEchhccCCCCcEEEEEeHHHHhhcCCcccCCCc
Confidence 122211111 111111 011111246899999999998877 9999999998877543211
Q ss_pred ----------------eeccCCCcHHHHHHHH-HHHHHHhc--ChHHHHHHHHHHHHHHHhhccCCCceeecCC-CCCEE
Q 013461 301 ----------------YVFSASLPPYLASAAI-TAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNP-ESPIV 360 (442)
Q Consensus 301 ----------------~~~s~s~~p~~aaaa~-aal~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~-~~~i~ 360 (442)
+.+..+.+++.+++++ ++++.+++ .+.++++++++++++.+.|++++|+++..+. .++++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 335 (406)
T 1kmj_A 256 IATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVI 335 (406)
T ss_dssp EEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEE
T ss_pred eeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEE
Confidence 1232333444444444 77877753 2467888999999999999988788877542 67788
Q ss_pred EEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccc---cCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 361 FLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---KCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~---~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
.+.++.. + ..++.+. |.++||.+.++..+..+ ....+..+||+++..+|++|+++++++|+++++.+
T Consensus 336 ~~~~~~~------~---~~~~~~~-l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 336 AFNLGKH------H---AYDVGSF-LDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp EEEETTC------C---HHHHHHH-HHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCC------C---HHHHHHH-HhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 8776321 1 2356654 56679999887542210 00113569999999999999999999999987653
No 73
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.91 E-value=3e-23 Score=204.70 Aligned_cols=297 Identities=18% Similarity=0.154 Sum_probs=206.6
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHHHhhhh
Q 013461 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIP 187 (442)
Q Consensus 110 ~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~~ai~ 187 (442)
.+|||+++.. .++.+|.+.+++.+++++ ... |+......++++.+|++++.+ +++++++|++++..++.
T Consensus 26 ~~i~l~~~~~-~~~~~~~v~~a~~~~~~~-~~~-------y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~ 96 (381)
T 1v2d_A 26 GAVNLGQGFP-SNPPPPFLLEAVRRALGR-QDQ-------YAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQ 96 (381)
T ss_dssp TCEECCCCSC-SSCCCHHHHHHHHHHTTT-SCS-------CCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHH
T ss_pred CeEEecCCCC-CCCCCHHHHHHHHHHHHH-hcC-------CCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHH
Confidence 4799987653 556789999999999876 221 222234579999999999864 78888889999999999
Q ss_pred hhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC--------CHHHHHHHHHhhcccccc------------------
Q 013461 188 CFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN--------DMDSLRNTLERVTADNKR------------------ 241 (442)
Q Consensus 188 a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~--------d~~~Le~~l~~~~~~~~~------------------ 241 (442)
++.++||.|+++.++|.++...++..|.+++.++.+ |+++|++.++..+.....
T Consensus 97 ~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~ 176 (381)
T 1v2d_A 97 SLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEA 176 (381)
T ss_dssp HHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred HhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHH
Confidence 999999999999999999988899999998887753 677777666432111000
Q ss_pred ----------------cccccccccCCCccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCCcee
Q 013461 242 ----------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYV 302 (442)
Q Consensus 242 ----------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~~~~ 302 (442)
+++.+.+|..+.++... ..++|+++.|+||++|+.| ||+++++++++.++......
T Consensus 177 i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~----~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~- 251 (381)
T 1v2d_A 177 IARLARAHDLFLISDEVYDELYYGERPRRLREF----APERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWT- 251 (381)
T ss_dssp HHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH----CTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHH-
T ss_pred HHHHHHHcCCEEEEEcCccccccCCCCCCHHHh----cCCCEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHHhhc-
Confidence 11111112111111111 1467999999999998655 99999999998876543221
Q ss_pred ccCCCcHHHHHHHHHHHHHH--hc-ChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHH
Q 013461 303 FSASLPPYLASAAITAIDVL--EE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE 379 (442)
Q Consensus 303 ~s~s~~p~~aaaa~aal~~l--~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 379 (442)
+.+.+++.++++.++++.. ++ .++++++++++++++.+.|++. |+++..+..+.++++.++..
T Consensus 252 -~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~------------ 317 (381)
T 1v2d_A 252 -SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELPGW------------ 317 (381)
T ss_dssp -TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECTTC------------
T ss_pred -ccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCcceEEEEecChH------------
Confidence 2234666667777888755 22 3567888999999999999885 88877554566777776321
Q ss_pred HHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHh
Q 013461 380 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 438 (442)
Q Consensus 380 ~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~ 438 (442)
++. .+++++||.+.++..+..+.. .+..+||+++. |++|+++++++|++++++..
T Consensus 318 ~~~-~~l~~~gi~v~~g~~~~~~~~-~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r 372 (381)
T 1v2d_A 318 DAF-RLVEEARVALIPASAFYLEDP-PKDLFRFAFCK--TEEELHLALERLGRVVNSPR 372 (381)
T ss_dssp CHH-HHHHHTCEECEEGGGGCSSSC-CTTEEEEECCS--CHHHHHHHHHHHHHHC----
T ss_pred hHH-HHHHhCCEEEecchHhCCCCC-CCCEEEEEeCC--CHHHHHHHHHHHHHHHhhcc
Confidence 123 356677999998765432111 13469999986 99999999999999877654
No 74
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.91 E-value=6.1e-23 Score=201.17 Aligned_cols=290 Identities=11% Similarity=0.036 Sum_probs=205.8
Q ss_pred CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCC--CcEEEEcchHHHHHhh
Q 013461 108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--PDSILYSYGLSTMFSA 185 (442)
Q Consensus 108 G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~--e~~i~~~sG~~a~~~a 185 (442)
++++|||+++.. .++.+|++++++.++++.+ .++.. .. ..++++++|+++|. ++++++++|++++..+
T Consensus 29 ~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~-~~y~~-------~~-~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~ 98 (365)
T 3get_A 29 VKEVIKLASNEN-PFGTPPKAIECLRQNANKA-HLYPD-------DS-MIELKSTLAQKYKVQNENIIIGAGSDQVIEFA 98 (365)
T ss_dssp CSCCEECSSCCC-TTCSCHHHHHHHHHHGGGT-TSCCC-------TT-CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHH
T ss_pred CCceEEecCCCC-CCCCCHHHHHHHHHHHHhh-ccCCC-------CC-hHHHHHHHHHHhCCCcceEEECCCHHHHHHHH
Confidence 368999987742 2446899999999988752 11111 11 15899999999994 5788888999999999
Q ss_pred hhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC-----CCHHHHHHHHHhhcccccc-------------------
Q 013461 186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKR------------------- 241 (442)
Q Consensus 186 i~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~-----~d~~~Le~~l~~~~~~~~~------------------- 241 (442)
+.+++++||.|+++.++|.++...++..|.+++.++. .|++++++.++..++....
T Consensus 99 ~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l 178 (365)
T 3get_A 99 IHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEF 178 (365)
T ss_dssp HHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCHHHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCCCCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHH
Confidence 9999999999999999999999999999999999986 2455565555422111000
Q ss_pred ----cccccccccCC-------------CccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCCce
Q 013461 242 ----SNSFGVLGRSG-------------RGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGY 301 (442)
Q Consensus 242 ----a~~~g~~G~~g-------------~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~~~ 301 (442)
.++.-++-+.- .+..... ...+.+++++||||++|+.| ||+++++++++.++.....+
T Consensus 179 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~ 256 (365)
T 3get_A 179 IKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELI--KEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPF 256 (365)
T ss_dssp HHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHH--HHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSCTT
T ss_pred HHhCCCCcEEEEeCccHHHhcccCCcccccHhHHh--ccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhcCCC
Confidence 11111111100 0111111 11245799999999998666 99999999999887765432
Q ss_pred eccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHH
Q 013461 302 VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDI 381 (442)
Q Consensus 302 ~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i 381 (442)
+.+++.++++.++++..+..++.+++++++++++.+.|+++ |+++. ++.++++++.++.. ...++
T Consensus 257 ----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~~~~~~~~~~~---------~~~~~ 321 (365)
T 3get_A 257 ----NVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH-NIKII-DSYTNFITYFFDEK---------NSTDL 321 (365)
T ss_dssp ----CSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC-CCSSSEEEEECSSS---------CHHHH
T ss_pred ----CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC-CCCCeEEEEECCCC---------CHHHH
Confidence 35777777777777644334567888999999999999987 88876 35677888877431 12356
Q ss_pred HHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 382 ADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 382 ~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
.+. |.++||.+.++..+. +..+|++++ |++|+++++++|++++
T Consensus 322 ~~~-l~~~gi~v~~g~~~~------~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 322 SEK-LLKKGIIIRNLKSYG------LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp HHH-HHTTTEECEECGGGT------CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred HHH-HHHCCEEEEECccCC------CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 765 455699999887543 356999987 8999999999998875
No 75
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.91 E-value=5e-23 Score=205.79 Aligned_cols=322 Identities=14% Similarity=0.148 Sum_probs=210.0
Q ss_pred CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCC-----CcEEEEcchHHHH
Q 013461 108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT-----PDSILYSYGLSTM 182 (442)
Q Consensus 108 G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~-----e~~i~~~sG~~a~ 182 (442)
+.++|||++++ .++..+|.+++++.+++.+.. ...++....|..+++..+++.+.+.+|. ++++++++|++++
T Consensus 27 ~~~~i~l~~g~-~~~~~~~~v~~a~~~~~~~~~-~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~ 104 (422)
T 3fvs_A 27 EHDVVNLGQGF-PDFPPPDFAVEAFQHAVSGDF-MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 104 (422)
T ss_dssp TSCCEECCCSS-CSSCCCHHHHHHHHHHHHSCG-GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred cCCceEeCCCC-CCCCCCHHHHHHHHHHHhCCC-ccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence 35789998876 467778999999999998622 0111111223444445555555544442 4678888889999
Q ss_pred HhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC-----------------CHHHHHHHHHhhcccccc----
Q 013461 183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----------------DMDSLRNTLERVTADNKR---- 241 (442)
Q Consensus 183 ~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-----------------d~~~Le~~l~~~~~~~~~---- 241 (442)
..++.+++++||.|+++.++|.++...++..|.+++.++.+ |++++++.+++.+.....
T Consensus 105 ~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~ 184 (422)
T 3fvs_A 105 FTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPN 184 (422)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTEEEEEEESSC
T ss_pred HHHHHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCCceEEEECCCC
Confidence 99999999999999999999999999999999998887753 566776665432211000
Q ss_pred --------------------cccccccc--------cCCCccccccCCC-CCceeEEEEeccccccCCC---cEEEcCHH
Q 013461 242 --------------------SNSFGVLG--------RSGRGLTEHCGVP-VDKIDIVTAAMGHALATEG---GFCTGSAR 289 (442)
Q Consensus 242 --------------------a~~~g~~G--------~~g~g~~~~~~v~-~~~~diii~S~sK~lg~~G---G~v~g~~~ 289 (442)
.|++-++- .+|.......... ..+.++++.||||++|+.| ||++++++
T Consensus 185 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~ 264 (422)
T 3fvs_A 185 NPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDH 264 (422)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCHH
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeCHH
Confidence 11111110 0111111111111 1256799999999998666 99999999
Q ss_pred hHHHHHhhCCceeccCCCcHHHHHHHHHHHHH-------Hh-cChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEE
Q 013461 290 VVDHQRLSSSGYVFSASLPPYLASAAITAIDV-------LE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVF 361 (442)
Q Consensus 290 ~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~-------l~-~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~ 361 (442)
+++.+........+ +.+++.++++.++++. .+ ..++++++++++++++.+.|++. |+++..+..+.+++
T Consensus 265 ~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 341 (422)
T 3fvs_A 265 IMKHLRTVHQNSVF--HCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYFLI 341 (422)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEE
T ss_pred HHHHHHHHHhhccC--CCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEE
Confidence 99887654322222 3467777777778764 11 22467888999999999999987 88876666777888
Q ss_pred EEecCCC---CC--chhhHHHHHHHHHHHHHhCCEEEeeccCccccc--CCCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 362 LILEKST---GS--MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK--CRLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 362 ~~~~~~~---~~--~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~--~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
+.+.... .. ...+.....+++..+++++||++.++..+.... ...+..+||+++. |+++|++++++|++++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~l 419 (422)
T 3fvs_A 342 TDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK--DEATLQAMDEKLRKWK 419 (422)
T ss_dssp EECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC--CHHHHHHHHHHHHHHH
T ss_pred EechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence 8763200 00 000000023567767777799999977543210 0113569999886 9999999999999887
Q ss_pred HH
Q 013461 435 AV 436 (442)
Q Consensus 435 ~~ 436 (442)
++
T Consensus 420 ~~ 421 (422)
T 3fvs_A 420 VE 421 (422)
T ss_dssp HC
T ss_pred hh
Confidence 53
No 76
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.91 E-value=1e-22 Score=201.68 Aligned_cols=313 Identities=14% Similarity=0.098 Sum_probs=212.7
Q ss_pred CCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC-----CC-cEE
Q 013461 101 GPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG-----TP-DSI 173 (442)
Q Consensus 101 g~~~~-~~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g-----~e-~~i 173 (442)
+.+++ .+|+++|||++++ ..+..+|.+++++.+++.... + +....|..+++.++++.+++++| .+ +++
T Consensus 21 ~~~~~~~~g~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~-~---y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~ 95 (396)
T 3jtx_A 21 MQGISAPEGMEAVPLHIGE-PKHPTPKVITDALTASLHELE-K---YPLTAGLPELRQACANWLKRRYDGLTVDADNEIL 95 (396)
T ss_dssp TTTCCCCTTCCCEECSCCS-CCSCCCHHHHHHHHHTGGGGG-S---CCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEE
T ss_pred HHhhhhccCCCeEEeCCcC-CCCCCCHHHHHHHHHHhhhcc-C---CCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEE
Confidence 34444 5789999998876 466678999999998876421 1 11223455666666666666656 34 778
Q ss_pred EEcchHHHHHhhhhhhccCC-----CEEEeCCCchHHHHHHHHhcCCeEEEecCC------CHHHHHHHHHhhccccc--
Q 013461 174 LYSYGLSTMFSAIPCFCKKG-----DLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNK-- 240 (442)
Q Consensus 174 ~~~sG~~a~~~ai~a~~~~g-----d~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~------d~~~Le~~l~~~~~~~~-- 240 (442)
++++|++++..++.+++++| |.|+++.++|.++...++..|.+++.++.+ |+++|++.+++.+....
T Consensus 96 ~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~ 175 (396)
T 3jtx_A 96 PVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVC 175 (396)
T ss_dssp EESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEE
T ss_pred EcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEE
Confidence 88888899999999999997 799999999999999999999999888752 67788887765322110
Q ss_pred -----c-----------------ccccccccc--------CC---Cccccc---cCCCCCceeEEEEeccccccCCC---
Q 013461 241 -----R-----------------SNSFGVLGR--------SG---RGLTEH---CGVPVDKIDIVTAAMGHALATEG--- 281 (442)
Q Consensus 241 -----~-----------------a~~~g~~G~--------~g---~g~~~~---~~v~~~~~diii~S~sK~lg~~G--- 281 (442)
. .|++-++-+ ++ .+.... ++. ..+.++++.||||++|+.|
T Consensus 176 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~r~ 254 (396)
T 3jtx_A 176 SPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGR-SRQKLLMFTSLSKRSNVPGLRS 254 (396)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTC-CCTTEEEEEESTTTSSCGGGCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhccc-ccCcEEEEeccccccCCcccce
Confidence 0 122111110 11 111100 010 1456899999999987666
Q ss_pred cEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEE
Q 013461 282 GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVF 361 (442)
Q Consensus 282 G~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~ 361 (442)
||+++++++++.+..... .++.+.+++.++++.++++..+...+.+++++++.+++.+.|.+. +.+..+..+.+++
T Consensus 255 G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~ 330 (396)
T 3jtx_A 255 GFVAGDAELLKNFLLYRT--YHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQV--FDVKLPDASFYIW 330 (396)
T ss_dssp EEEEECHHHHHHHHHHHH--HHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTT--SCCCCCSSSSEEE
T ss_pred EEEEeCHHHHHHHHHHHh--hcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc--CCccCCCeeEEEE
Confidence 999999999998875432 233456778877777787643333567788889999999999875 3344344567788
Q ss_pred EEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCccccc---CCCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 362 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK---CRLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~---~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
+.++.. + ..++++.+++++||.+.++..+.... ...+..+||+++. |++++++++++|++++
T Consensus 331 ~~~~~~------~---~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 331 LKVPDG------D---DLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DVATCVKAAEDIVSLY 395 (396)
T ss_dssp EECTTS------C---HHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred EECCCC------C---HHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 877431 1 23567766666799999987654321 1113569999885 9999999999998764
No 77
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.91 E-value=7e-23 Score=203.93 Aligned_cols=307 Identities=14% Similarity=0.083 Sum_probs=207.3
Q ss_pred CCeeEEEeecCCCC--CCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh----C----CCcEEEEc
Q 013461 107 SGKEVVNFASANYL--GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G----TPDSILYS 176 (442)
Q Consensus 107 ~G~~~id~~s~~~l--~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~----g----~e~~i~~~ 176 (442)
+|+++|||+++.+. +++.+|++++++.+++++.... |+......++++.+|+++ | .+++++++
T Consensus 36 ~g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-------y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~ 108 (406)
T 1xi9_A 36 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNY-------YGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTA 108 (406)
T ss_dssp TTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCS-------CCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred cCCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCCC-------CCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcC
Confidence 57889999887653 5566799999999998762111 222222356666666665 3 25778888
Q ss_pred chHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC-------CHHHHHHHHHhhcccccc--------
Q 013461 177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKR-------- 241 (442)
Q Consensus 177 sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~~-------- 241 (442)
+|++|+..++.+++++||.|+++.++|.++...++..|.+++.++.+ |+++|++.+++.+.....
T Consensus 109 g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG 188 (406)
T 1xi9_A 109 AVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTG 188 (406)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTC
T ss_pred ChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEEECCCCCCC
Confidence 88999999999999999999999999999999999999998887642 677888777542211000
Q ss_pred --------------------------cccccccccCCCccccccCCCCCce-eEEEEeccccccCCC---cEEE--cCH-
Q 013461 242 --------------------------SNSFGVLGRSGRGLTEHCGVPVDKI-DIVTAAMGHALATEG---GFCT--GSA- 288 (442)
Q Consensus 242 --------------------------a~~~g~~G~~g~g~~~~~~v~~~~~-diii~S~sK~lg~~G---G~v~--g~~- 288 (442)
+++.+.++..... ...+ + .+. |++++||||++|+.| ||++ +++
T Consensus 189 ~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~-~~~~--~-~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~ 264 (406)
T 1xi9_A 189 ALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHIS-PGSL--T-KDVPVIVMNGLSKVYFATGWRLGYMYFVDPEN 264 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCC-HHHH--C-SSSCEEEEEESTTTTCCGGGCCEEEEEECTTC
T ss_pred CCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCC-HHHc--C-CCceEEEEeccccccCCCccEEEEEEEecCch
Confidence 1111111100000 1111 1 356 899999999998655 8988 998
Q ss_pred ---HhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEe
Q 013461 289 ---RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL 364 (442)
Q Consensus 289 ---~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~ 364 (442)
++++.++...... .+.+++.++++.++++...+ .++++++++++++++.+.|++++++++..+..+.++++.+
T Consensus 265 ~~~~l~~~l~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 341 (406)
T 1xi9_A 265 KLSEVREAIDRLARIR---LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKI 341 (406)
T ss_dssp TTHHHHHHHHHHHHHT---CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEE
T ss_pred hHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCeeEEEEEec
Confidence 8988876543221 23456666777777753322 3457788899999999999887788776443444555566
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHh
Q 013461 365 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 438 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~ 438 (442)
+...+ .+ ..++++.+++++||.+.++..+... .+..+||+++ ++++++++++++|++++++++
T Consensus 342 ~~~~~---~~---~~~l~~~l~~~~gi~v~~g~~f~~~---~~~~lRis~~--~~~~~i~~~~~~l~~~l~~~~ 404 (406)
T 1xi9_A 342 EVGPW---KN---DKEFVLDVLHNAHVLFVHGSGFGEY---GAGHFRAVFL--PPIEILEEAMDRFEKFMKERL 404 (406)
T ss_dssp CSCSC---SS---HHHHHHHHHHHHCEECEEGGGGCGG---GTTBEEEECC--SCHHHHHHHHHHHHHHHHHC-
T ss_pred CccCC---CC---HHHHHHHHHHhCCEEEeCchhcCCC---CCCEEEEEec--CCHHHHHHHHHHHHHHHHHHh
Confidence 42101 01 2357776664669999987654321 1245999998 799999999999999987754
No 78
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.91 E-value=1.6e-23 Score=205.93 Aligned_cols=302 Identities=21% Similarity=0.236 Sum_probs=208.0
Q ss_pred CCeeecCCCCeEE-ECCeeEEEeecCCC-CCCC-CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCC
Q 013461 93 PPVLESAAGPHTI-ISGKEVVNFASANY-LGLI-GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT 169 (442)
Q Consensus 93 ~~~~~~~~g~~~~-~~G~~~id~~s~~~-l~~~-~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~ 169 (442)
|+++++++|.++| .+|+.+|||+++.+ ..++ .+|++.+++.+++++++.... .| ..+...+++++||+++|.
T Consensus 11 ~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~----~y-~~~~~~~l~~~la~~~g~ 85 (375)
T 2eh6_A 11 PVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSN----LY-ENPWQEELAHKLVKHFWT 85 (375)
T ss_dssp EEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCT----TB-CCHHHHHHHHHHHHTSSS
T ss_pred CccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCc----cc-CCHHHHHHHHHHHhhcCC
Confidence 5678899999998 49999999987654 4555 689999999999988643221 23 245678999999999998
Q ss_pred -CcEEEEcchHHHHHhhhhh---hc---cCC-CEEEeCCCc-hHHHHHHHHhcCC------------eEEEecCCCHHHH
Q 013461 170 -PDSILYSYGLSTMFSAIPC---FC---KKG-DLIVADEGV-HWGIQNGLYLSRS------------TVVYFKHNDMDSL 228 (442)
Q Consensus 170 -e~~i~~~sG~~a~~~ai~a---~~---~~g-d~Vi~~~~~-h~s~~~~~~l~g~------------~v~~~~~~d~~~L 228 (442)
++++++++|++++..++.+ +. ++| |.|++.++. |........+.+. .+..++++|+++|
T Consensus 86 ~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 165 (375)
T 2eh6_A 86 EGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSV 165 (375)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHH
T ss_pred CCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCchHHHH
Confidence 7888999999999998864 45 778 887776665 5544444443322 1566777888888
Q ss_pred HHHHHhhcccc-------------c----c------------------cccccccccCCCcc-ccccCCCCCceeEEEEe
Q 013461 229 RNTLERVTADN-------------K----R------------------SNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAA 272 (442)
Q Consensus 229 e~~l~~~~~~~-------------~----~------------------a~~~g~~G~~g~g~-~~~~~v~~~~~diii~S 272 (442)
++.+++.+... . . +|+ + +|..+.+. .+.++.. .|++ |
T Consensus 166 ~~~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~-~-~~~~~~~~~~~~~~~~---~d~~--s 238 (375)
T 2eh6_A 166 YKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQT-G-IGRTGEFYAYQHFNLK---PDVI--A 238 (375)
T ss_dssp HTTCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSGGGGGTCC---CSEE--E
T ss_pred HHHhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEecccc-C-CCCCCcchhhhhcCCC---CCEE--E
Confidence 87765321100 0 0 222 1 12222211 2233332 3555 7
Q ss_pred ccccccC--CCcEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCce
Q 013461 273 MGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLS 350 (442)
Q Consensus 273 ~sK~lg~--~GG~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~ 350 (442)
|||+++. +.|++++++++++.++...... +.+.+++.++++.++++.++ +..++++++++++.+.|+++ +..
T Consensus 239 ~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~l~~~L~~~-~~~ 312 (375)
T 2eh6_A 239 LAKGLGGGVPIGAILAREEVAQSFTPGSHGS--TFGGNPLACRAGTVVVDEVE---KLLPHVREVGNYFKEKLKEL-GKG 312 (375)
T ss_dssp ECGGGGTTSCCEEEEEEHHHHTTCCTTSCCC--SSTTCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHT-TSS
T ss_pred EcccccCCCCeEEEEEcHHHHhhhcCCCCCC--CCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-hcC
Confidence 8899974 2389999988887665422222 33457888888888888765 57889999999999999886 333
Q ss_pred eecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHH
Q 013461 351 IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESL 430 (442)
Q Consensus 351 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l 430 (442)
.. ++.+.++++.++.+ ..++++.++ ++||.+.++. +..+|++++..+|++|+++++++|
T Consensus 313 ~~-~~~g~~~~~~~~~~----------~~~~~~~l~-~~gi~~~~~~---------~~~iRi~~~~~~~~~~i~~~~~~l 371 (375)
T 2eh6_A 313 KV-KGRGLMLGLELERE----------CKDYVLKAL-EKGLLINCTA---------GKVLRFLPPLIIQKEHIDRAISVL 371 (375)
T ss_dssp EE-EEETTEEEEECSSC----------CHHHHHHHH-HTTEECEEET---------TTEEEECCCTTCCHHHHHHHHHHH
T ss_pred Cc-eEEEEEEEEEEcCc----------HHHHHHHHH-HCCCEEecCC---------CCEEEEECCCCCCHHHHHHHHHHH
Confidence 22 23578888887431 125666544 5799998752 245999999889999999999999
Q ss_pred HHH
Q 013461 431 KRI 433 (442)
Q Consensus 431 ~~~ 433 (442)
+++
T Consensus 372 ~~~ 374 (375)
T 2eh6_A 372 REI 374 (375)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 79
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.91 E-value=2.9e-23 Score=208.45 Aligned_cols=304 Identities=12% Similarity=0.058 Sum_probs=210.9
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcC-CCCCccCccccCcHHHHHHHHHHHhhhC--------CCcEEEEcc
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYG-VGSCGPRGFYGTIDVHLDCEARIAKFLG--------TPDSILYSY 177 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g-~~~~~~~~~~g~~~~~~~le~~lA~~~g--------~e~~i~~~s 177 (442)
+|+++|||+++.+ .+..+|++++++.+++.+.. .++ +......++++.+|++++ .++++++++
T Consensus 42 ~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~y-------~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g 113 (437)
T 3g0t_A 42 TGTKFCRMEMGVP-GLPAPQIGIETEIQKLREGVASIY-------PNLDGLPELKQEASRFAKLFVNIDIPARACVPTVG 113 (437)
T ss_dssp HTCCCEECCCCSC-CSCCCHHHHHHHHHHHHHTGGGSC-------CCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESH
T ss_pred cCCCEEeccCcCC-CCCCCHHHHHHHHHHHhCCcCcCC-------CCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCC
Confidence 5789999988864 56678999999999998511 111 111222567777777665 357788888
Q ss_pred hHHHHHhhhhhhc--cCCC--EEEeCCCchHHHHHHHHhcCCeEEEecCC------CHHHHHHHHHh-hcccc-------
Q 013461 178 GLSTMFSAIPCFC--KKGD--LIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLER-VTADN------- 239 (442)
Q Consensus 178 G~~a~~~ai~a~~--~~gd--~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~------d~~~Le~~l~~-~~~~~------- 239 (442)
|++++..++.+++ ++|| .|+++.++|.++...++..|.+++.++.+ |+++|++.++. .++..
T Consensus 114 ~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~n 193 (437)
T 3g0t_A 114 SMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNN 193 (437)
T ss_dssp HHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCT
T ss_pred HHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCC
Confidence 8999999999998 9999 99999999999999999999999888764 67788887732 11110
Q ss_pred cc-----------------cccccccccCCC------ccccc-------cCCC-CCceeEEEEeccccccCCC---cEEE
Q 013461 240 KR-----------------SNSFGVLGRSGR------GLTEH-------CGVP-VDKIDIVTAAMGHALATEG---GFCT 285 (442)
Q Consensus 240 ~~-----------------a~~~g~~G~~g~------g~~~~-------~~v~-~~~~diii~S~sK~lg~~G---G~v~ 285 (442)
+. .|+.-++-+.-. +.... ..+. ..+.+++++|+||++|+.| ||++
T Consensus 194 ptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 273 (437)
T 3g0t_A 194 PTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLM 273 (437)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEE
T ss_pred CCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEE
Confidence 00 122111111000 00000 1111 1456799999999998665 9999
Q ss_pred cCHHhHH-H-----------------HHhhCCceeccCCCcHHHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHhh
Q 013461 286 GSARVVD-H-----------------QRLSSSGYVFSASLPPYLASAAITAIDVLEE----NPDLITKLKKNTAILRTGL 343 (442)
Q Consensus 286 g~~~~i~-~-----------------l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~----~~~~~~~l~~~~~~l~~~L 343 (442)
+++++++ . +...... .+.+.+++.++++.++++..+. ..+++++++++++++.+.|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 351 (437)
T 3g0t_A 274 ISGKLYEREYPDLEESFGRLRFGEALSSSALYA--LSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMF 351 (437)
T ss_dssp ECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHH--HHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHhhhhhhcccccccccchhHHHHHHHHhh--hcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888 6 5432211 2334577777888888877653 4568899999999999999
Q ss_pred ccCCCceee------cC-CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecC
Q 013461 344 SDIHGLSIA------SN-PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA 416 (442)
Q Consensus 344 ~~~~g~~~~------~~-~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~ 416 (442)
+++ |+++. .+ ..+.++++.++.. + ..++.+.++ ++||.+.++..+.... +..+||+++.
T Consensus 352 ~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~l~~~L~-~~gi~v~~~~~~~~~~---~~~iRis~~~ 417 (437)
T 3g0t_A 352 LDN-GFNIVYDKDGNEPLADGFYFTVGYKGM------D---SSKLIEKFV-RYGMCAITLKTTGSKR---NEAMRICTSL 417 (437)
T ss_dssp HTT-TEEESSCEETTEECCSSSEEEEEETTC------C---HHHHHHHHH-HTTEECEESTTTTCCC---TTCEEEECSS
T ss_pred HHc-CCEEeccccCCCCCceeEEEEEecCCC------C---HHHHHHHHH-HcCeEEeeccccCCCC---CCEEEEEEec
Confidence 988 88876 23 5677888887511 1 235777655 5599999876543211 2459999995
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 013461 417 AHSEADLVKACESLKRISA 435 (442)
Q Consensus 417 ~~t~eei~~~i~~l~~~~~ 435 (442)
.|++|+++++++|+++++
T Consensus 418 -~~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 418 -LPESQFPDLEKRLQMLNA 435 (437)
T ss_dssp -SCGGGHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHh
Confidence 499999999999998765
No 80
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.91 E-value=5.8e-24 Score=207.83 Aligned_cols=308 Identities=13% Similarity=0.090 Sum_probs=207.2
Q ss_pred eeEEE-eecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhh
Q 013461 109 KEVVN-FASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIP 187 (442)
Q Consensus 109 ~~~id-~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~ 187 (442)
|+++| |++++|+|+++||.+.+++.++++.++ .+..+..||..+.+.+|++++|+++|.+..+++++|++++..++.
T Consensus 3 ~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~--~~~~~~~y~~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~ 80 (357)
T 3lws_A 3 NRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVA--DEMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALR 80 (357)
T ss_dssp CHHHHHHHTCSEESSBSSCCBHHHHHHHHTTSC--TTCBCEETTEETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHH
T ss_pred chhhhHHHhhcccccCCCCCCHHHHHHHHHHhh--cccCcccccCChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHH
Confidence 45677 789999999999999999999988876 233456788888899999999999999999999999999999999
Q ss_pred hhccCCC--EEEeCCCchHHHHH---HHHhcCCeEEEecCC----CHHHHHHHHHhhcccccc-----------------
Q 013461 188 CFCKKGD--LIVADEGVHWGIQN---GLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKR----------------- 241 (442)
Q Consensus 188 a~~~~gd--~Vi~~~~~h~s~~~---~~~l~g~~v~~~~~~----d~~~Le~~l~~~~~~~~~----------------- 241 (442)
+++++|| +|+++..+|.+... .....|++++.++.. |++++++..+ +.....
T Consensus 81 ~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~~--~~~v~~~~p~np~~G~~~~~~~l 158 (357)
T 3lws_A 81 IWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRLMTLDEIKALPD--IACLLLELPQREIGGVAPAFSEL 158 (357)
T ss_dssp HHHHHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSCTTSCCCHHHHHTCCS--CSEEEEESSBGGGTSBCCCHHHH
T ss_pred HHhhcCCCcEEEecccceeeeeccchhhhccCcEEEEecCCCCCcCHHHHhcCcC--cceEEEEcccccCCceeCCHHHH
Confidence 9999988 89999999887654 345678888888743 6777766521 110000
Q ss_pred --------cccccccccCCCc--cccccCCCC----CceeEEEEeccccc-cCCCcEEEcCHHhHHHHHhhCCceeccCC
Q 013461 242 --------SNSFGVLGRSGRG--LTEHCGVPV----DKIDIVTAAMGHAL-ATEGGFCTGSARVVDHQRLSSSGYVFSAS 306 (442)
Q Consensus 242 --------a~~~g~~G~~g~g--~~~~~~v~~----~~~diii~S~sK~l-g~~GG~v~g~~~~i~~l~~~~~~~~~s~s 306 (442)
.|++-++-+.... .....+... ...|+++.|+||++ |..||++++++++++.++.....+..+..
T Consensus 159 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 238 (357)
T 3lws_A 159 ETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPAAFCQTARIWKRRYGGDLI 238 (357)
T ss_dssp HHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCceEEEEcCHHHHHHHHHHHHHhcCCcc
Confidence 1121111110000 000011110 23578899999999 66789999999999887643211111111
Q ss_pred CcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceee-cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHH
Q 013461 307 LPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA-SNPESPIVFLILEKSTGSMKNDLQLLEDIADWA 385 (442)
Q Consensus 307 ~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~ 385 (442)
.+...++++.++++...+ ..++++++++++.+.|++++|+++. .++.++++++.++.. ......++.+.
T Consensus 239 ~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~- 308 (357)
T 3lws_A 239 SLYPYIVSADYYYELRKD---RMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQ------AADISPKLEQV- 308 (357)
T ss_dssp CCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESC------HHHHHHHHHHH-
T ss_pred cchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCC------hHHHHHHHHHH-
Confidence 233344445566654322 3445678889999999988888873 456788999888532 11123456664
Q ss_pred HHhCCEEEeeccCcccccCCCCCceEEEecCC---CCHHHHHHHHHHHHHHH
Q 013461 386 LKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAA---HSEADLVKACESLKRIS 434 (442)
Q Consensus 386 L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~---~t~eei~~~i~~l~~~~ 434 (442)
|.++||.+.++..+. + . ...+|+++... .+++++++++++|++++
T Consensus 309 l~~~Gi~v~~g~~~~-~-~--~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 309 QEETGLGFVGYLVDK-D-G--YCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp HHHHCEESCSCCEEC-S-S--EEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred HHhcCeEEecccccC-C-C--ceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 555699999875432 1 0 12499998754 58899999999988764
No 81
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.91 E-value=5.9e-23 Score=205.91 Aligned_cols=320 Identities=11% Similarity=0.094 Sum_probs=206.6
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC----CC-cEEEEcchHHHHH
Q 013461 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG----TP-DSILYSYGLSTMF 183 (442)
Q Consensus 109 ~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g----~e-~~i~~~sG~~a~~ 183 (442)
.++|||+++.+ +++.+|.+++++.+++++.+.+..++....|..++.+.+.+.+.+++| .+ +++++++|++++.
T Consensus 37 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~ 115 (429)
T 1yiz_A 37 YKPLNLGQGFP-DYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY 115 (429)
T ss_dssp HCCEECCSSSC-SSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CCEEEecCCCC-CCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHH
Confidence 46899987754 556789999999999976321111111122333444444444444346 24 6788888899999
Q ss_pred hhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC---------------CCHHHHHHHHHhhcccccc-------
Q 013461 184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---------------NDMDSLRNTLERVTADNKR------- 241 (442)
Q Consensus 184 ~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~---------------~d~~~Le~~l~~~~~~~~~------- 241 (442)
.++.+++++||.|+++.++|..+...++..|.+++.++. .|+++|++.++........
T Consensus 116 ~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~npt 195 (429)
T 1yiz_A 116 ATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPL 195 (429)
T ss_dssp HHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred HHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCCCCCC
Confidence 999999999999999999999988889999999887764 3677777766432110000
Q ss_pred -----------------cccccccc--------cCCCccccccCCC-CCceeEEEEeccccccCCC---cEEEcCHHhHH
Q 013461 242 -----------------SNSFGVLG--------RSGRGLTEHCGVP-VDKIDIVTAAMGHALATEG---GFCTGSARVVD 292 (442)
Q Consensus 242 -----------------a~~~g~~G--------~~g~g~~~~~~v~-~~~~diii~S~sK~lg~~G---G~v~g~~~~i~ 292 (442)
.|++-++- ..|.+......++ ..++|+++.|+||++|+.| ||+++++++++
T Consensus 196 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~ 275 (429)
T 1yiz_A 196 GKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLK 275 (429)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCHHHHH
T ss_pred CccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEeCHHHHH
Confidence 11111110 0111111112221 2467999999999998666 99999999998
Q ss_pred HHHhhCCceeccCCCcHHHHHHHHHHHHH-----H--hc-ChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEe
Q 013461 293 HQRLSSSGYVFSASLPPYLASAAITAIDV-----L--EE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL 364 (442)
Q Consensus 293 ~l~~~~~~~~~s~s~~p~~aaaa~aal~~-----l--~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~ 364 (442)
.++.......+ +.+++.++++.++++. . ++ .++.+++++++++++.+.|.+. |+++..+..+.++++.+
T Consensus 276 ~l~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~ 352 (429)
T 1yiz_A 276 NLQMVHQNCVY--TCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADW 352 (429)
T ss_dssp HHHHHHHTTTC--CCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEECSBSSEEEEEC
T ss_pred HHHHHHhhccc--CCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEEc
Confidence 88654322222 3467777777788877 3 21 2456788889999999999887 88876554567888887
Q ss_pred cCCCCCc----hhhHHHHHHHHHHHHHhCCEEEeeccCccccc--CCCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 365 EKSTGSM----KNDLQLLEDIADWALKEDGVFVVTSKRSMLDK--CRLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 365 ~~~~~~~----~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~--~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
....... ........++++.+++++||.+.++..+.... ...+..+||+++ .+++||++++++|++++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l 426 (429)
T 1yiz_A 353 SSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKAAEILRKWK 426 (429)
T ss_dssp CSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHHHHHHHHHHHHS
T ss_pred ccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHHHHHHHHHHHhc
Confidence 5320000 00001134677766656799999875432111 001346999998 48999999999998765
No 82
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.91 E-value=4.6e-23 Score=202.79 Aligned_cols=302 Identities=11% Similarity=0.007 Sum_probs=203.2
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCC----CcEEEEcchHHHH
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGLSTM 182 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~----e~~i~~~sG~~a~ 182 (442)
+| ++|||++++ ..++.+|.+++++.+++... ..+ ....|..+++.++++.+++.+|. ++++++++|++++
T Consensus 22 ~g-~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~-~~y---~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al 95 (376)
T 3ezs_A 22 KK-RGLDLGIGE-PQFETPKFIQDALKNHTHSL-NIY---PKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVL 95 (376)
T ss_dssp SS-CCCBCSSCC-CCSCCCHHHHHHHHTTGGGG-GSC---CCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHH
T ss_pred cC-CEEEeCCCC-CCCCCCHHHHHHHHHhhhhc-CCC---CCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHH
Confidence 57 899998875 35556899999998877331 111 11234445555555555555574 5778888899999
Q ss_pred HhhhhhhccC--CCEEEeCCCchHHHHHHHHhcCCeEEEecCCCHH----HHHHHHHhhccccc-------c--------
Q 013461 183 FSAIPCFCKK--GDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMD----SLRNTLERVTADNK-------R-------- 241 (442)
Q Consensus 183 ~~ai~a~~~~--gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~d~~----~Le~~l~~~~~~~~-------~-------- 241 (442)
..++.+++++ ||.|+++.++|.++...++..|.+++.++.++.+ ++++.+.+.+.... .
T Consensus 96 ~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~ 175 (376)
T 3ezs_A 96 FNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNNPTGRTLSLEE 175 (376)
T ss_dssp HHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCCCCCHHHHHHCSEEEECSSCTTTCCCCCHHH
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcchhHHhhhccCCCEEEEcCCCCCcCCCCCHHH
Confidence 9999999999 9999999999999999999999999988865332 45555543221100 0
Q ss_pred -------------------cccccccccCCCcccccc---CCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHHHh
Q 013461 242 -------------------SNSFGVLGRSGRGLTEHC---GVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRL 296 (442)
Q Consensus 242 -------------------a~~~g~~G~~g~g~~~~~---~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~ 296 (442)
+|+...++.......... +.+..+.++++.||||++|+.| ||+++++++++.+..
T Consensus 176 l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~ 255 (376)
T 3ezs_A 176 LISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKA 255 (376)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeCHHHHHHHHH
Confidence 122111111111111110 0002456899999999998666 999999999998876
Q ss_pred hCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHH
Q 013461 297 SSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQ 376 (442)
Q Consensus 297 ~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 376 (442)
..... +.+.+++.++++.++++..+...+.+++++++.+++.+.|+ ++. .+..+.++++.++.
T Consensus 256 ~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~---~~~--~~~~~~~~~~~~~~---------- 318 (376)
T 3ezs_A 256 FRAYL--GYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK---NTL--IYPYSFYVYLPVQN---------- 318 (376)
T ss_dssp HHTTT--CCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST---TCC--CCSBSSEEEEECSC----------
T ss_pred HHhhh--cCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc---CCC--CCCcceEEEEECCC----------
Confidence 54332 23457777777778887533345677888889999998886 444 24467788887731
Q ss_pred HHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHH
Q 013461 377 LLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 435 (442)
Q Consensus 377 ~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~ 435 (442)
..++++.+++++||.+.++..+..+. ..+..+||+++. |++|+++++++|+++++
T Consensus 319 -~~~~~~~l~~~~gi~v~~g~~~~~~~-~~~~~iRis~~~--~~~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 319 -GENFAKTLYQNEGIITLPALYLGRNR-IGADYVRLALVY--DTPLLEKPLEIIETYRE 373 (376)
T ss_dssp -HHHHHHHHHHHHCCBCEEGGGGCSTT-TTTTEEEEECCS--CHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHhCCEEEeCcHHhCCCC-CCCCeEEEEEcC--CHHHHHHHHHHHHHHHH
Confidence 23577766654699999987654211 113569999984 99999999999998764
No 83
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.91 E-value=3.5e-23 Score=206.05 Aligned_cols=305 Identities=13% Similarity=0.141 Sum_probs=205.5
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh----CC-----CcEEEEcc
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT-----PDSILYSY 177 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~----g~-----e~~i~~~s 177 (442)
.|+++|||+++.+ .++.+|.+++++.+++++... . .|+......++++.+|+++ |. ++++++++
T Consensus 45 ~g~~~idl~~g~~-~~~~~~~v~~a~~~~~~~~~~--~----~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G 117 (404)
T 2o1b_A 45 GPLPLINMAVGIP-DGPTPQGIIDHFQKALTIPEN--Q----KYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYG 117 (404)
T ss_dssp CSSCCEECCCCSC-SSCCCHHHHHHHHHHTTCHHH--H----SCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESS
T ss_pred CCCCEEecCCcCC-CCCCCHHHHHHHHHHHhCCCC--C----CCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCC
Confidence 4778999988764 556789999999998754100 0 1111122356777777766 84 35677777
Q ss_pred hHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC------CHHHHHHHHHhhcccc-------cc---
Q 013461 178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADN-------KR--- 241 (442)
Q Consensus 178 G~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~------d~~~Le~~l~~~~~~~-------~~--- 241 (442)
|++++..++.+++++||.|+++.++|.++..+++..|.+++.++.+ |+++|++.++..+.-. +.
T Consensus 118 ~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~ 197 (404)
T 2o1b_A 118 TKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGST 197 (404)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCC
T ss_pred cHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCCCCCcc
Confidence 7899999999999999999999999999999999999998888752 5778877775322110 00
Q ss_pred --------------ccccccccc--------CCCccccccCCC-CCceeEEEEeccccccCCC---cEEEcCHHhHHHHH
Q 013461 242 --------------SNSFGVLGR--------SGRGLTEHCGVP-VDKIDIVTAAMGHALATEG---GFCTGSARVVDHQR 295 (442)
Q Consensus 242 --------------a~~~g~~G~--------~g~g~~~~~~v~-~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~ 295 (442)
.|++-++-+ +|.. ....... ..+.|++++||||++|+.| ||+++++++++.++
T Consensus 198 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~ 276 (404)
T 2o1b_A 198 ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKN-PSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALK 276 (404)
T ss_dssp CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCC-CCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCC-CChhhcCCCCCCEEEEEecchhccCchhheEeEecCHHHHHHHH
Confidence 122111110 0110 0111111 1256899999999998666 99999999999887
Q ss_pred hhCCceeccCCCcHHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh
Q 013461 296 LSSSGYVFSASLPPYLASAAITAIDVL-EENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND 374 (442)
Q Consensus 296 ~~~~~~~~s~s~~p~~aaaa~aal~~l-~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 374 (442)
.....+ +.+.+++.++++.++++.. +..++.+++++++++++.+.|++. |+++..+..+.++++.++... +
T Consensus 277 ~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~-----~ 348 (404)
T 2o1b_A 277 KYQTHT--NAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVHAKGGIYVWLETPPGY-----D 348 (404)
T ss_dssp HHHHHH--CCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCCBSSEEEEECCTTC-----C
T ss_pred HHHhhc--cCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCeecCCCcceEEEEeCCCCC-----C
Confidence 543222 2345777777777787763 223457788899999999999887 887764434446777774211 1
Q ss_pred HHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHH
Q 013461 375 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 435 (442)
Q Consensus 375 ~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~ 435 (442)
..++++.+++++||.+.++..+... .+..+||+++. +++++++++++|+++++
T Consensus 349 ---~~~l~~~l~~~~gi~v~~g~~f~~~---~~~~iRis~~~--~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 349 ---SEQFEQFLVQEKSILVAPGKPFGEN---GNRYVRISLAL--DDQKLDEAAIRLTELAY 401 (404)
T ss_dssp ---HHHHHHHHHHHHCEECEESGGGCGG---GTTEEEEECCS--CTTHHHHHHHHHHGGGG
T ss_pred ---HHHHHHHHHHHCCEEEeCchhhCcC---CCCeEEEEEcC--CHHHHHHHHHHHHHHHH
Confidence 2357776665569999987654311 13469999996 78999999999987764
No 84
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.91 E-value=4e-22 Score=195.49 Aligned_cols=293 Identities=10% Similarity=0.061 Sum_probs=211.5
Q ss_pred CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCC---CcEEEEcchHHHHHh
Q 013461 108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT---PDSILYSYGLSTMFS 184 (442)
Q Consensus 108 G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~---e~~i~~~sG~~a~~~ 184 (442)
.+++|||+++. ..+..+|++++++.+++.+.+.. .|+. ....++++++|+++|. ++++++++|++++..
T Consensus 29 ~~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~~------~y~~-~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~ 100 (367)
T 3euc_A 29 SHGLVKLDAME-NPYRLPPALRSELAARLGEVALN------RYPV-PSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISM 100 (367)
T ss_dssp CTTCEECCSSC-CCCCCCHHHHHHHHHHHHHHHTT------CSCC-CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHH
T ss_pred CCCeeEccCCC-CCCCCCHHHHHHHHHHhhhhhhh------cCCC-CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHH
Confidence 35789998875 45567899999999999853211 1111 2357999999999997 567888888999999
Q ss_pred hhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC-----CCHHHHHHHHHhh-cccccc-----------------
Q 013461 185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-----NDMDSLRNTLERV-TADNKR----------------- 241 (442)
Q Consensus 185 ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~-----~d~~~Le~~l~~~-~~~~~~----------------- 241 (442)
++.+++++||.|+++.++|.++...++..|.+++.++. .|+++|++.+++. ++....
T Consensus 101 ~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~ 180 (367)
T 3euc_A 101 LALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADME 180 (367)
T ss_dssp HHHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHH
T ss_pred HHHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHH
Confidence 99999999999999999999988889999999988874 3789999988762 221000
Q ss_pred -------cc--cccccccCC------CccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCCceec
Q 013461 242 -------SN--SFGVLGRSG------RGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVF 303 (442)
Q Consensus 242 -------a~--~~g~~G~~g------~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~~~~~ 303 (442)
.| +.-++-+.- .+.... +...+.++++.||||+ +..| ||+++++++++.++.....
T Consensus 181 ~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~~~~--- 254 (367)
T 3euc_A 181 AIVRAAQGSVCRSLVVVDEAYQPFAQESWMSR--LTDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLDKVRPP--- 254 (367)
T ss_dssp HHHHHTBTTSCBCEEEEECTTCCSSSCCSGGG--GGTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHGGGCCS---
T ss_pred HHHHhhhhcCCCcEEEEeCcchhhcccchHHH--HhhCCCEEEEecchhh-cccccCceeeeeCHHHHHHHHHhCCC---
Confidence 23 222221110 111111 1223467999999999 7665 9999999999988765433
Q ss_pred cCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHH
Q 013461 304 SASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIAD 383 (442)
Q Consensus 304 s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~ 383 (442)
.+.+++.++++.++++..+...+.+++++++++++.+.|++++|+++. ++.+.++++.++ + ..++.+
T Consensus 255 -~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~--------~---~~~l~~ 321 (367)
T 3euc_A 255 -YNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP--------D---AAQTFD 321 (367)
T ss_dssp -SCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS--------C---HHHHHH
T ss_pred -CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--------C---HHHHHH
Confidence 235778888888888763333567888999999999999988888865 456778887773 1 235666
Q ss_pred HHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 384 WALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 384 ~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
. |.++||.+.++..+.. ..+..+|++++ |++|+++++++|++++
T Consensus 322 ~-l~~~gi~v~~~~~~~~---~~~~~iRis~~---~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 322 R-LLARKVLIKNVSKMHP---LLANCLRVTVS---TPEENAQFLEAFAASL 365 (367)
T ss_dssp H-HHTTTEECEECGGGCG---GGTTEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred H-HHHCCeEEEECCccCC---CCCCEEEEecC---CHHHHHHHHHHHHHHh
Confidence 5 5677999998765321 01356999986 9999999999998875
No 85
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.91 E-value=3.6e-22 Score=194.65 Aligned_cols=302 Identities=13% Similarity=0.082 Sum_probs=199.4
Q ss_pred cCCCCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC--cEEE
Q 013461 98 SAAGPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSIL 174 (442)
Q Consensus 98 ~~~g~~~~-~~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e--~~i~ 174 (442)
.+.|.+++ .+|+++|||+++. ..++.+|++++++.+++..+ ..+. .... .++++++|+++|.+ ++++
T Consensus 3 ~~~g~~~~~~~g~~~id~~~~~-~~~~~~~~v~~a~~~~~~~~-~~y~-------~~~~-~~lr~~la~~~~~~~~~i~~ 72 (350)
T 3fkd_A 3 FGHGDEGITPLSSEIVNFSTTV-WTDGDKDHLEKHLVENLNCI-RHYP-------EPDA-GTLRQMLAKRNSVDNNAILV 72 (350)
T ss_dssp -------------CCEECSCCS-CCCSCCHHHHHHHHHTGGGG-GSCC-------CTTC-HHHHHHHHHHTTCCGGGEEE
T ss_pred ccccchHhhhccccEEEccCCC-CCCCCCHHHHHHHHHhHhHH-hcCC-------CCcH-HHHHHHHHHHhCcCHHHEEE
Confidence 34566677 6899999998874 24446899999999887442 1111 1111 58999999999964 6788
Q ss_pred EcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC-CC--------------------------HHH
Q 013461 175 YSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-ND--------------------------MDS 227 (442)
Q Consensus 175 ~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~-~d--------------------------~~~ 227 (442)
+++|++++..++.++. ||.|+++.++|.++...++..|++++.++. ++ +++
T Consensus 73 t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~ 150 (350)
T 3fkd_A 73 TNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADFSNMDFCWLCNPNNPDGRLLQRTE 150 (350)
T ss_dssp ESHHHHHHHHHHHHTT--TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSCCTTCSEEEEESSCTTTCCCCCHHH
T ss_pred cCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCccccCccCCCCEEEEeCCCCCcCCCCCHHH
Confidence 8888899999999887 999999999999999999999998887766 32 233
Q ss_pred HHHHHHhhcccccc---cccccccccCCCccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCCce
Q 013461 228 LRNTLERVTADNKR---SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGY 301 (442)
Q Consensus 228 Le~~l~~~~~~~~~---a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~~~ 301 (442)
++++++...+.... +|+. ++..+....... +..+.+++++||||++|+.| ||+++++++++.++.....
T Consensus 151 l~~l~~~~~~~~li~Dea~~~--~~~~~~~~~~~~--~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~- 225 (350)
T 3fkd_A 151 ILRLLNDHPDTTFVLDQSYVS--FTTEEVIRPADI--KGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFSTP- 225 (350)
T ss_dssp HHHHHHHCTTSEEEEECTTTT--SCSSCCCCGGGG--TTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCCT-
T ss_pred HHHHHHhCCCCEEEEECchhh--hccCcchhhHHh--hcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCCC-
Confidence 44444332211000 2221 111111111111 22456799999999998665 9999999999998765432
Q ss_pred eccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHH
Q 013461 302 VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDI 381 (442)
Q Consensus 302 ~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i 381 (442)
.+.+++.++++.++++..+...+..++..++++++.+.|++++++++. ++.++++++.++.. ...++
T Consensus 226 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~l 292 (350)
T 3fkd_A 226 ---WAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVH-PSGTTFFLLRLKKG---------TAAEL 292 (350)
T ss_dssp ---TCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEEC-CCSSSEEEEEESSS---------CHHHH
T ss_pred ---CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEC-CCCCcEEEEECCCC---------CHHHH
Confidence 245778888787888755422223444448889999999888788875 45678888887532 12367
Q ss_pred HHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHH
Q 013461 382 ADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 435 (442)
Q Consensus 382 ~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~ 435 (442)
++.+++++||.+.++..+.. ..+..+||+++ +++|+++++++|+++.+
T Consensus 293 ~~~L~~~~gi~v~~g~~f~~---~~~~~iRis~~---~~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 293 KKYMLEEYNMLIRDASNFRG---LDESYVRITTQ---RPAQNQLFIKALETFLE 340 (350)
T ss_dssp HHHHHHTTCEECEECTTSTT---CCTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCEEEEeCccCCC---CCCCEEEEEcC---CHHHHHHHHHHHHHHHH
Confidence 77655547999998865431 01356999986 88999999999987754
No 86
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.91 E-value=1.9e-22 Score=197.44 Aligned_cols=297 Identities=13% Similarity=0.094 Sum_probs=207.0
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC--CCcEEEEcchHHHHHh
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--TPDSILYSYGLSTMFS 184 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g--~e~~i~~~sG~~a~~~ 184 (442)
+|+++|||+++.+ .+..+|++++++.+++++.+....+ |+. ....++++++|+++| .++++++++|++++..
T Consensus 24 ~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~----y~~-~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~ 97 (360)
T 3hdo_A 24 DIASWIKLNTNEN-PYPPSPEVVKAILEELGPDGAALRI----YPS-ASSQKLREVAGELYGFDPSWIIMANGSDEVLNN 97 (360)
T ss_dssp CCTTSEECSSCCC-SSCCCHHHHHHHHHHHTTTCGGGGS----CCC-SSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHH
T ss_pred cccceeeccCCCC-CCCCCHHHHHHHHHHHhcccchhhc----CCC-CchHHHHHHHHHHhCcCcceEEEcCCHHHHHHH
Confidence 5778999988764 5667899999999998773211111 111 123699999999999 4578888999999999
Q ss_pred hhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCCCHHHHHHHHHhhcccccc----------------------c
Q 013461 185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKR----------------------S 242 (442)
Q Consensus 185 ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~d~~~Le~~l~~~~~~~~~----------------------a 242 (442)
++.+++++||.|+++.++|.++...++..|.+++.++.++...++++++..+.+... .
T Consensus 98 ~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~ 177 (360)
T 3hdo_A 98 LIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGDFRIAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELARR 177 (360)
T ss_dssp HHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCTTSSBTTCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCCCCHHHHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHHH
Confidence 999999999999999999999999999999999888764321222222211111000 1
Q ss_pred cccccccc------CCCccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCCceeccCCCcHHHHH
Q 013461 243 NSFGVLGR------SGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLAS 313 (442)
Q Consensus 243 ~~~g~~G~------~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aa 313 (442)
++.-++-+ .+.+.....+ ..+.+++++||||++|+.| ||+++++++++.++..... .+.+++.++
T Consensus 178 ~~~~li~De~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 251 (360)
T 3hdo_A 178 CAGMLVLDETYAEFAESNALELVR--RHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRDH----YNLDRLAQA 251 (360)
T ss_dssp BSSEEEEECTTGGGSSCCCTHHHH--HCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSCS----CCSCHHHHH
T ss_pred CCCEEEEECChHhhCCcchhHHhc--cCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhCCC----CCCCHHHHH
Confidence 11111100 0111111111 1345789999999998666 9999999999998776533 245788888
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEE
Q 013461 314 AAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 393 (442)
Q Consensus 314 aa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v 393 (442)
++.++++..+...+.+++++++++++.+.|++. |+.+. ++.++++++.+... + ..++.+. |.++||.+
T Consensus 252 a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~------~---~~~l~~~-l~~~gi~v 319 (360)
T 3hdo_A 252 ACVAALRDQAYLSECCRRIRETREWFTTELRSI-GYDVI-PSQGNYLFATPPDR------D---GKRVYDG-LYARKVLV 319 (360)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC-CCSSSEEEEECTTC------C---HHHHHHH-HHHTTEEC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEc-CCCccEEEEECCCC------C---HHHHHHH-HHHCCEEE
Confidence 888888754334567888999999999999987 88776 45778888766321 1 2356665 55679999
Q ss_pred eeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHH
Q 013461 394 VTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 435 (442)
Q Consensus 394 ~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~ 435 (442)
+++..+. .+..+|++++ |++|+++++++|+++.+
T Consensus 320 ~~~~~~~-----~~~~iRis~~---~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 320 RHFSDPL-----LAHGMRISIG---TREEMEQTLAALKEIGE 353 (360)
T ss_dssp BCCCSTT-----TTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred EECCCCC-----CCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence 8865421 1356999987 89999999999998754
No 87
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.91 E-value=9.7e-23 Score=204.81 Aligned_cols=278 Identities=14% Similarity=0.062 Sum_probs=188.4
Q ss_pred ccCcHHHHHHHHHHHhhhC----------CCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHH-hcCCeEE
Q 013461 150 YGTIDVHLDCEARIAKFLG----------TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY-LSRSTVV 218 (442)
Q Consensus 150 ~g~~~~~~~le~~lA~~~g----------~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~-l~g~~v~ 218 (442)
|+......+|++++|++++ .++++++++|++|+..++.+++++||.|+++.++|.++..++. ..|.+++
T Consensus 82 y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~ 161 (435)
T 3piu_A 82 FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIV 161 (435)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEE
T ss_pred cCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEE
Confidence 3333444789999998887 5678999999999999999999999999999999999988887 7899999
Q ss_pred EecCC-------CHHHHHHHHHhhcc---cccc-------------------------------------cccccccccC
Q 013461 219 YFKHN-------DMDSLRNTLERVTA---DNKR-------------------------------------SNSFGVLGRS 251 (442)
Q Consensus 219 ~~~~~-------d~~~Le~~l~~~~~---~~~~-------------------------------------a~~~g~~G~~ 251 (442)
.++++ |+++|++.+++... +.+. +|+.++++..
T Consensus 162 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~ 241 (435)
T 3piu_A 162 PIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP 241 (435)
T ss_dssp EEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS
T ss_pred EeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Confidence 98874 78899998876311 1100 2222222111
Q ss_pred CCccccccC----CC----CCceeEEEEeccccccCCC---cEEEc-CHHhHHHHHhhCCceeccCCCcHHHHHHHHHHH
Q 013461 252 GRGLTEHCG----VP----VDKIDIVTAAMGHALATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAI 319 (442)
Q Consensus 252 g~g~~~~~~----v~----~~~~diii~S~sK~lg~~G---G~v~g-~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal 319 (442)
+........ ++ ..+.+++++||||++|+.| ||+++ ++++++.++..... + ..+++.++++.+++
T Consensus 242 ~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l 317 (435)
T 3piu_A 242 SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF--G--LVSSQTQHLLSAML 317 (435)
T ss_dssp CCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGG--S--CCCHHHHHHHHHHH
T ss_pred CCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhhc--C--CCCHHHHHHHHHHh
Confidence 111000010 10 0345689999999998766 99988 56777777654321 1 22445555555555
Q ss_pred HHH---h-cChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEee
Q 013461 320 DVL---E-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT 395 (442)
Q Consensus 320 ~~l---~-~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~ 395 (442)
+.. + ...+.+++++++.+++.+.|.+. |+++..+..+.++++.++..... .......+++++++++.||.+.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~~gi~v~~ 394 (435)
T 3piu_A 318 SDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRS--NTFEAEMELWKKIVYEVHLNISP 394 (435)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSSS--SSHHHHHHHHHHHHHTSCEECEE
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEEccccccc--CCchhHHHHHHHHHHHCCEEEeC
Confidence 432 2 12456788899999999999887 88877555558888888542111 01112346777766666999998
Q ss_pred ccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHh
Q 013461 396 SKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 438 (442)
Q Consensus 396 ~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~ 438 (442)
+..+... .+..+||+++.. |++|+++++++|+++++++.
T Consensus 395 g~~~~~~---~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 395 GSSCHCT---EPGWFRVCFANL-PERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp GGGGTCS---STTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC
T ss_pred CcccCCC---CCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHh
Confidence 7654311 135699999654 99999999999999987653
No 88
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.91 E-value=2.4e-22 Score=198.57 Aligned_cols=307 Identities=16% Similarity=0.185 Sum_probs=201.7
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCC----C-cEEEEcchHHHHHh
Q 013461 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----P-DSILYSYGLSTMFS 184 (442)
Q Consensus 110 ~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~----e-~~i~~~sG~~a~~~ 184 (442)
++|||+++.+ +++.+|.+.+++.+++++...++ ....|..++.+.+.+.+.+++|. + +++++++|++++..
T Consensus 31 ~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y---~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 106 (386)
T 1u08_A 31 QAINLSQGFP-DFDGPRYLQERLAHHVAQGANQY---APMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 106 (386)
T ss_dssp TCEECCCSSC-SSCCCHHHHHHHHHHHHTTCCSC---CCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CeEEecCCCC-CCCCCHHHHHHHHHHHHhhccCC---CCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHH
Confidence 5899987764 56678999999999997621111 11123333334444444333463 4 78888888999999
Q ss_pred hhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC------CCHHHHHHHHHhhcccccc-----------------
Q 013461 185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH------NDMDSLRNTLERVTADNKR----------------- 241 (442)
Q Consensus 185 ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~------~d~~~Le~~l~~~~~~~~~----------------- 241 (442)
++.+++++||.|+++.+.|.++...++..|.+++.++. .|+++|++.++..+.....
T Consensus 107 ~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~ 186 (386)
T 1u08_A 107 AITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFA 186 (386)
T ss_dssp HHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred HHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHHH
Confidence 99999999999999999999999999999999988875 3677888776432111000
Q ss_pred -------ccccccccc--------CCCccccccCCC-CCceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCCcee
Q 013461 242 -------SNSFGVLGR--------SGRGLTEHCGVP-VDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYV 302 (442)
Q Consensus 242 -------a~~~g~~G~--------~g~g~~~~~~v~-~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~~~~ 302 (442)
.|++-++-+ .|.+......++ ..++|++++|+||++|+.| ||+++++++++.++.......
T Consensus 187 ~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~ 266 (386)
T 1u08_A 187 ALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLT 266 (386)
T ss_dssp HHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCHHHHHHHHHHHHhhc
Confidence 122111110 111111111111 1356899999999998666 999999999988865432222
Q ss_pred ccCCCcHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHH
Q 013461 303 FSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDI 381 (442)
Q Consensus 303 ~s~s~~p~~aaaa~aal~~l~-~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i 381 (442)
+ +.+++.++++.++++..+ ..++++++++++++++.+.|++. |+++..+..+.++++.++.... .+ ..++
T Consensus 267 ~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~---~~---~~~~ 337 (386)
T 1u08_A 267 F--SVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAVST---LD---DVEF 337 (386)
T ss_dssp S--SCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECTTTCC---SC---HHHH
T ss_pred c--CCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCceEEEEEecCCCCC---CC---HHHH
Confidence 3 335666666777777532 22457788999999999999987 8887655456788887743100 01 2356
Q ss_pred HHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHH
Q 013461 382 ADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR 432 (442)
Q Consensus 382 ~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~ 432 (442)
++.+++++||.+.++..+.... ..+..+||+++ .+++||++++++|++
T Consensus 338 ~~~l~~~~gi~v~~g~~f~~~~-~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 338 CQWLTQEHGVAAIPLSVFCADP-FPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp HHHHHHHSCEECEEGGGGCSSC-CCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred HHHHHHhCCEEEeCchHhCCCC-CCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 7766666799999876432111 11356999998 489999999999864
No 89
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.90 E-value=7.7e-23 Score=204.12 Aligned_cols=313 Identities=12% Similarity=0.088 Sum_probs=207.4
Q ss_pred eeEEEeecCCC---CCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC--------------CCc
Q 013461 109 KEVVNFASANY---LGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------------TPD 171 (442)
Q Consensus 109 ~~~id~~s~~~---l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g--------------~e~ 171 (442)
+++|||+++++ ..+..+|++++++.+++++... . .|+......++++.+|++++ .++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~--~----~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~ 106 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQEC--N----GYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDN 106 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCS--S----SCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGG
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCcc--C----CcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcce
Confidence 46899988763 4667789999999999976311 1 12222334678888888776 357
Q ss_pred EEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC-------CCHHHHHHHHHhhcccccc---
Q 013461 172 SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-------NDMDSLRNTLERVTADNKR--- 241 (442)
Q Consensus 172 ~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~-------~d~~~Le~~l~~~~~~~~~--- 241 (442)
++++++|++++..++.+++++||.|+++.++|.++...++..|.+++.++. .|+++|++.++..+.....
T Consensus 107 v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p 186 (416)
T 1bw0_A 107 VVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNP 186 (416)
T ss_dssp EEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESS
T ss_pred EEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCC
Confidence 788888899999999999999999999999999999999999999888764 2677888776543211000
Q ss_pred ---------------------ccccccc--------ccCCC----ccccccCCCCCceeEEEEeccccccCCC---cEEE
Q 013461 242 ---------------------SNSFGVL--------GRSGR----GLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT 285 (442)
Q Consensus 242 ---------------------a~~~g~~--------G~~g~----g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~ 285 (442)
.|+.-++ ...|. .......+..++.+++++||||++++.| ||++
T Consensus 187 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~ 266 (416)
T 1bw0_A 187 SNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLL 266 (416)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEE
T ss_pred CCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEEEE
Confidence 1111111 00111 1112222333345788999999987655 8988
Q ss_pred cCHH--hHHHHHhhCCce-eccCCCcHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEE
Q 013461 286 GSAR--VVDHQRLSSSGY-VFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIV 360 (442)
Q Consensus 286 g~~~--~i~~l~~~~~~~-~~s~s~~p~~aaaa~aal~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~ 360 (442)
++++ +++.+......+ ..+.+.+++.++++.++++... ..++.+++++++++++.+.|++++|+++..+..+.++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~ 346 (416)
T 1bw0_A 267 YVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYL 346 (416)
T ss_dssp EECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEE
T ss_pred eeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEE
Confidence 7653 444332110000 1123457777777778887422 2345778899999999999998778877655557788
Q ss_pred EEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 361 FLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
++.++...-....+ ..++++.+++++||.+.++..+.. +..+||+++ .+++++++++++|++++++.
T Consensus 347 ~~~~~~~~~~~~~~---~~~~~~~l~~~~gi~v~~g~~f~~-----~~~iRis~~--~~~e~l~~~l~~l~~~l~~~ 413 (416)
T 1bw0_A 347 MSRIDLEKYRDIKT---DVEFFEKLLEEENVQVLPGTIFHA-----PGFTRLTTT--RPVEVYREAVERIKAFCQRH 413 (416)
T ss_dssp EEEECGGGBSSCCS---HHHHHHHHHHHHCEECEEGGGGTC-----TTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCHHHcCCCCC---HHHHHHHHHHHCCEEEecccccCC-----CCeEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 87774210000001 235677666566999998765432 356999995 68999999999999988764
No 90
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.90 E-value=1.7e-22 Score=201.15 Aligned_cols=313 Identities=13% Similarity=0.115 Sum_probs=205.4
Q ss_pred CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC--------C-CcEEEEcch
Q 013461 108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------T-PDSILYSYG 178 (442)
Q Consensus 108 G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g--------~-e~~i~~~sG 178 (442)
+.++|||++++ .++..+|.+++++.+++.+... .++....|. .++++.+|++++ . ++++++++|
T Consensus 22 ~~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~--~~y~~~~g~----~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~ 94 (410)
T 3e2y_A 22 DPSVVNLGQGF-PDISPPSYVKEELSKAAFIDNM--NQYTRGFGH----PALVKALSCLYGKIYQRQIDPNEEILVAVGA 94 (410)
T ss_dssp STTSEECSSCC-CCSCCCHHHHHHHHHHHTCGGG--GSCCCTTCC----HHHHHHHHHHHHHHHTSCCCTTTSEEEESHH
T ss_pred CCCeEEecCCC-CCCCCCHHHHHHHHHHHhCccc--cCCCCCCCh----HHHHHHHHHHHHHHhCCCCCCCCCEEEeCCc
Confidence 34689998877 5677789999999999875311 111111223 456666666654 2 577888888
Q ss_pred HHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC----------------CHHHHHHHHHhhcccccc-
Q 013461 179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----------------DMDSLRNTLERVTADNKR- 241 (442)
Q Consensus 179 ~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~----------------d~~~Le~~l~~~~~~~~~- 241 (442)
++++..++.+++++||.|+++.++|..+...+...|.+++.++.+ |++++++.++........
T Consensus 95 ~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~ 174 (410)
T 3e2y_A 95 YGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILN 174 (410)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEEe
Confidence 899999999999999999999999999999999999998887753 677777665432111000
Q ss_pred -----------------------cccccccc--------cCCCccccccCCC-CCceeEEEEeccccccCCC---cEEEc
Q 013461 242 -----------------------SNSFGVLG--------RSGRGLTEHCGVP-VDKIDIVTAAMGHALATEG---GFCTG 286 (442)
Q Consensus 242 -----------------------a~~~g~~G--------~~g~g~~~~~~v~-~~~~diii~S~sK~lg~~G---G~v~g 286 (442)
.|+.-++- .+|.......... ..+.++++.||||++|+.| ||+++
T Consensus 175 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~ 254 (410)
T 3e2y_A 175 TPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIG 254 (410)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEEC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEE
Confidence 11111110 0111110111111 1256799999999998666 99999
Q ss_pred CHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHH--------HhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCC
Q 013461 287 SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV--------LEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP 358 (442)
Q Consensus 287 ~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~--------l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~ 358 (442)
++++++.++...... ..+.+++.++++.++++. .+..++++++++++++++.+.|+++ |+++..+..+.
T Consensus 255 ~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 331 (410)
T 3e2y_A 255 PAHLIKHLQTVQQNS--FYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGY 331 (410)
T ss_dssp CHHHHHHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSS
T ss_pred CHHHHHHHHHHHHhh--ccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCccE
Confidence 999999886543222 223467777777777763 1122467788899999999999987 88877666677
Q ss_pred EEEEEecCCCCCchh---hHHHHHHHHHHHHHhCCEEEeeccCcccccC--CCCCceEEEecCCCCHHHHHHHHHHHHH
Q 013461 359 IVFLILEKSTGSMKN---DLQLLEDIADWALKEDGVFVVTSKRSMLDKC--RLPVGIRLFVSAAHSEADLVKACESLKR 432 (442)
Q Consensus 359 i~~~~~~~~~~~~~~---~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~--~~~~~iRi~~~~~~t~eei~~~i~~l~~ 432 (442)
++++.+......... +.....+++..+++++||++.++..+..... ..+..+||+++. |+++|++++++|++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 332 FIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK--KDSTLDAAEEIFRA 408 (410)
T ss_dssp EEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC--CHHHHHHHHHHHHT
T ss_pred EEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC--CHHHHHHHHHHHHh
Confidence 888877431110000 0011235666667777999999876532110 012459999875 99999999999875
No 91
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.5e-23 Score=207.42 Aligned_cols=317 Identities=15% Similarity=0.174 Sum_probs=204.7
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCC----CcEEEEcchHHHH
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGLSTM 182 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~----e~~i~~~sG~~a~ 182 (442)
.|+++|||+++. .+++++|.+.+++.+++++.+.. .+....|..++.+++.+.+.+++|. ++++++++|++++
T Consensus 55 ~~~~~i~l~~g~-~~~~~~~~v~~a~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGF-FSYSPPQFAIKEAQKALDIPMVN--QYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCS-CSSCCCHHHHHHHHHHTTSGGGG--SCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCC-CCCCCCHHHHHHHHHHHhCcCCC--CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 356899998775 36667899999999998763211 1111223333344444444333453 4678888889999
Q ss_pred HhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC-----------------CCHHHHHHHHHhhccccc-----
Q 013461 183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-----------------NDMDSLRNTLERVTADNK----- 240 (442)
Q Consensus 183 ~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~-----------------~d~~~Le~~l~~~~~~~~----- 240 (442)
..++.+++++||.|++..++|..+...++..|++++.++. .|+++|++.++..+....
T Consensus 132 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~ 211 (447)
T 3b46_A 132 LSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPH 211 (447)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEEESSC
T ss_pred HHHHHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEEEeCCC
Confidence 9999999999999999999999999999999998877652 356777766542211000
Q ss_pred --c-----------------ccccccccc--------CCCccccccCCC--CCceeEEEEeccccccCCC---cEEEc-C
Q 013461 241 --R-----------------SNSFGVLGR--------SGRGLTEHCGVP--VDKIDIVTAAMGHALATEG---GFCTG-S 287 (442)
Q Consensus 241 --~-----------------a~~~g~~G~--------~g~g~~~~~~v~--~~~~diii~S~sK~lg~~G---G~v~g-~ 287 (442)
. .|++-++-+ +|.. .....+. ..++|++++|+||++|+.| ||+++ +
T Consensus 212 nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~ 290 (447)
T 3b46_A 212 NPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSF-TRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLN 290 (447)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCC-CCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSC
T ss_pred CCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCC-cCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCC
Confidence 0 122111110 1100 0011110 1257899999999998766 99999 9
Q ss_pred HHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHH--hc-ChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEe
Q 013461 288 ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL--EE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL 364 (442)
Q Consensus 288 ~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l--~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~ 364 (442)
+++++.++.......+ +.+++.++++.++|+.. ++ .++++++++++++++.+.|+++ |+++..+..+.++++.+
T Consensus 291 ~~l~~~l~~~~~~~~~--~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~ 367 (447)
T 3b46_A 291 AELLSYAAKAHTRICF--ASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL-GLPYTAPEGTYFVLVDF 367 (447)
T ss_dssp HHHHHHHHHHHHHHTS--SCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEEC
T ss_pred HHHHHHHHHHHhhccC--CCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEec
Confidence 9999888654322223 33666666777788765 22 3457888999999999999987 88876555577888887
Q ss_pred cCCCCCchh-------hHHHHHHHHHHHHHhCCEEEeeccCcccccC--CCCCceEEEecCCCCHHHHHHHHHHHHH
Q 013461 365 EKSTGSMKN-------DLQLLEDIADWALKEDGVFVVTSKRSMLDKC--RLPVGIRLFVSAAHSEADLVKACESLKR 432 (442)
Q Consensus 365 ~~~~~~~~~-------~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~--~~~~~iRi~~~~~~t~eei~~~i~~l~~ 432 (442)
......... +.....++++.+++++||.+.++..+..+.. ..+..+||+++. ++++|++++++|++
T Consensus 368 ~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~--~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 368 SKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK--DDAYLENAVERLKL 442 (447)
T ss_dssp TTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCS--CHHHHHHHHHHGGG
T ss_pred ccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeC--CHHHHHHHHHHHHH
Confidence 531000000 0012346777666667999998764432110 013459999984 89999999999976
No 92
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.90 E-value=2.5e-21 Score=190.22 Aligned_cols=284 Identities=13% Similarity=0.101 Sum_probs=200.2
Q ss_pred EEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhh------hCC--CcEEEEcchHHHHH
Q 013461 112 VNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF------LGT--PDSILYSYGLSTMF 183 (442)
Q Consensus 112 id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~------~g~--e~~i~~~sG~~a~~ 183 (442)
|||+++.+ .++.+|++.+++.+++++++.... .|+.... .++++.+|++ ++. ++++++++|++++.
T Consensus 33 idl~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~----~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~ 106 (369)
T 3cq5_A 33 IRLNTNEN-PYPPSEALVADLVATVDKIATELN----RYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQ 106 (369)
T ss_dssp EECSSCCC-CSCCCHHHHHHHHHHHHHHGGGTT----SCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred eeccCCCC-CCCCCHHHHHHHHHHHHhcccccc----cCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHH
Confidence 89988865 566789999999999987532111 1222222 5788888887 342 35666666779999
Q ss_pred hhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC-----CHHHHHHHHHhhcccccc-----------------
Q 013461 184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKR----------------- 241 (442)
Q Consensus 184 ~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~~----------------- 241 (442)
.++.+++++||.|+++.++|.++..+++..|.+++.++++ |++++++.+++.......
T Consensus 107 ~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l 186 (369)
T 3cq5_A 107 QLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDV 186 (369)
T ss_dssp HHHHHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHH
T ss_pred HHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHH
Confidence 9999999999999999999999999999999999888754 678888887652111000
Q ss_pred ---------------cccccccccCCCccccccCCCCCc-eeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCCcee
Q 013461 242 ---------------SNSFGVLGRSGRGLTEHCGVPVDK-IDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYV 302 (442)
Q Consensus 242 ---------------a~~~g~~G~~g~g~~~~~~v~~~~-~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~~~~ 302 (442)
+|+.+..+ ....... +..+ .+++++||||++|+.| ||+++++++++.++.....
T Consensus 187 ~~l~~~~~~~li~De~~~~~~~~---~~~~~~~--~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~-- 259 (369)
T 3cq5_A 187 ERIINVAPGIVIVDEAYAEFSPS---PSATTLL--EKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRLP-- 259 (369)
T ss_dssp HHHHHHCSSEEEEECTTGGGCCS---CCGGGGT--TTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTTSCT--
T ss_pred HHHHHhCCCEEEEECCchhhcCC---cchHHHH--hhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHcCCC--
Confidence 11111110 0111111 1123 6799999999998666 9999999999988765433
Q ss_pred ccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHH
Q 013461 303 FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIA 382 (442)
Q Consensus 303 ~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~ 382 (442)
+ +.+++.++++.++++..+..++.+++++++++++.+.|++. |+++. ++.++++++.++. + ..++.
T Consensus 260 ~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~-------~---~~~l~ 325 (369)
T 3cq5_A 260 Y--HLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL-GYAVV-PSESNFVFFGDFS-------D---QHAAW 325 (369)
T ss_dssp T--CSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH-TCEEE-CCSSSEEEEECCS-------S---HHHHH
T ss_pred C--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC-CCCCeEEEEECCC-------C---HHHHH
Confidence 2 35777777777888754333457788899999999999885 88876 4567888887631 1 23566
Q ss_pred HHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 383 DWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 383 ~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
+. |.++||.+.++.. +..+|++++ |++|+++++++|++++
T Consensus 326 ~~-l~~~gi~v~~~~~--------~~~iRis~~---~~~~i~~~~~~l~~~~ 365 (369)
T 3cq5_A 326 QA-FLDRGVLIRDVGI--------AGHLRTTIG---VPEENDAFLDAAAEII 365 (369)
T ss_dssp HH-HHHTTEECBCCSC--------TTEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred HH-HHHCCEEEEECCC--------CCeEEEEeC---CHHHHHHHHHHHHHHH
Confidence 65 4567999987621 345999997 8999999999998875
No 93
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.90 E-value=3.5e-22 Score=199.14 Aligned_cols=309 Identities=14% Similarity=0.101 Sum_probs=201.7
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh----CC----C-cEEEEcchHH
Q 013461 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----P-DSILYSYGLS 180 (442)
Q Consensus 110 ~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~----g~----e-~~i~~~sG~~ 180 (442)
.+|||+++.. +++.+|.+++++.+++++. ..++....|. .++++.+|+++ |. + +++++++|++
T Consensus 26 ~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~---~~~y~~~~g~----~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~ 97 (411)
T 2o0r_A 26 GAVNLGQGFP-DEDGPPKMLQAAQDAIAGG---VNQYPPGPGS----APLRRAIAAQRRRHFGVDYDPETEVLVTVGATE 97 (411)
T ss_dssp TCEESSCSSC-SSCCCHHHHHHHHHHHHTT---CCSCCCTTCC----HHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHH
T ss_pred CeeeccCcCC-CCCCCHHHHHHHHHHHhcC---CCCCCCCCCC----HHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHH
Confidence 4799977653 5567899999999999762 1111112233 45555555554 62 3 6788888899
Q ss_pred HHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC--------CCHHHHHHHHHhhcccccc-----------
Q 013461 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRNTLERVTADNKR----------- 241 (442)
Q Consensus 181 a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~--------~d~~~Le~~l~~~~~~~~~----------- 241 (442)
++..++.+++++||.|+++.++|.++...++..|.+++.++. .|+++|++.++..+.....
T Consensus 98 al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~ 177 (411)
T 2o0r_A 98 AIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVL 177 (411)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCC
Confidence 999999999999999999999999999999999999888764 4778888777532211000
Q ss_pred -------------ccccccccc--------CCCccccccCCC-CCceeEEEEeccccccCCC---cEEEcCHHhHHHHHh
Q 013461 242 -------------SNSFGVLGR--------SGRGLTEHCGVP-VDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRL 296 (442)
Q Consensus 242 -------------a~~~g~~G~--------~g~g~~~~~~v~-~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~ 296 (442)
.|++-++-+ .|.+......++ ..++|+++.|+||++|+.| ||+++++++++.+..
T Consensus 178 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~ 257 (411)
T 2o0r_A 178 SATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPAELIAGVRA 257 (411)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeCHHHHHHHHH
Confidence 111111100 111111111121 1467999999999998666 999999999988765
Q ss_pred hCCceeccCCCcHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhH
Q 013461 297 SSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDL 375 (442)
Q Consensus 297 ~~~~~~~s~s~~p~~aaaa~aal~~l~-~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~ 375 (442)
......++. +++.++++.++++..+ ..++++++++++++++.+.|++. |+++..+..+.++++.+....+ .+
T Consensus 258 ~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~---~~- 330 (411)
T 2o0r_A 258 AKQYLSYVG--GAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI-GFAVHDSYGTYFLCADPRPLGY---DD- 330 (411)
T ss_dssp HHHHHTSCC--CTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCCBSSEEEEECGGGTC---CC-
T ss_pred HHhhccCCC--ChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCEecCCCeeEEEEEecCCCCC---CC-
Confidence 432222333 4445555667776532 23457788899999999999887 8887654445578888743100 01
Q ss_pred HHHHHHHHHHHHhCCEEEeeccCccccc--------CCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 376 QLLEDIADWALKEDGVFVVTSKRSMLDK--------CRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 376 ~~~~~i~~~~L~~~GV~v~~~~~~~~~~--------~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
..++++.+++++||.+.++..+.... ...+..+||+++ .+++|+++++++|++++++.
T Consensus 331 --~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~~~ 396 (411)
T 2o0r_A 331 --STEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVLAERP 396 (411)
T ss_dssp --HHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC--
T ss_pred --HHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhcc
Confidence 23567766656699999876542110 001245999997 48999999999999876554
No 94
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.90 E-value=6.8e-22 Score=194.17 Aligned_cols=303 Identities=14% Similarity=0.069 Sum_probs=200.8
Q ss_pred CChHHHHHHHHHHHhc-CCCCCccCccccCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHHHhhhhhhc----cCCCEE
Q 013461 124 GHEKLLESCTSALEKY-GVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCFC----KKGDLI 196 (442)
Q Consensus 124 ~~p~v~ea~~~~l~~~-g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~~ai~a~~----~~gd~V 196 (442)
.+|.+++++.+++.+. +.....+...++..+...++++.+|+++|.+ +++++++|++++..++.++. ++||.|
T Consensus 12 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~v 91 (382)
T 4hvk_A 12 VDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHI 91 (382)
T ss_dssp CCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEE
T ss_pred CCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEE
Confidence 4789999999999873 3222223333456788889999999999975 46777888899999999988 999999
Q ss_pred EeCCCchHHHHHHHHh---cCCeEEEecCC-----CHHHHHHHHHhhcccccc---------------------cccccc
Q 013461 197 VADEGVHWGIQNGLYL---SRSTVVYFKHN-----DMDSLRNTLERVTADNKR---------------------SNSFGV 247 (442)
Q Consensus 197 i~~~~~h~s~~~~~~l---~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~~---------------------a~~~g~ 247 (442)
+++.+.|+++...+.. .|++++.++.+ |+++|++.+++.+.-... .|+. +
T Consensus 92 i~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-l 170 (382)
T 4hvk_A 92 LVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-L 170 (382)
T ss_dssp EEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-E
T ss_pred EECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-E
Confidence 9999999998776554 58899988865 788888877643221100 4444 4
Q ss_pred cccCCCccc-cccCCCCCceeEEEEeccccccCCC-cEEEcCHHhHHHHHhhCC----ce-eccCCCcHHHHHHHHHHHH
Q 013461 248 LGRSGRGLT-EHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLSSS----GY-VFSASLPPYLASAAITAID 320 (442)
Q Consensus 248 ~G~~g~g~~-~~~~v~~~~~diii~S~sK~lg~~G-G~v~g~~~~i~~l~~~~~----~~-~~s~s~~p~~aaaa~aal~ 320 (442)
+-+.-.+.. ..+++...++|+++.|++|.+|..| |+++++++. .++.... .. ...++.++..++++.++++
T Consensus 171 i~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 248 (382)
T 4hvk_A 171 HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAE 248 (382)
T ss_dssp EEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH
T ss_pred EEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHH
Confidence 432211110 0112211246899999999888754 777776654 1111100 00 1133446666666667777
Q ss_pred HHhc-ChHHHHHHHHHHHHHHHhhccCCCceeecCCC---CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeec
Q 013461 321 VLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPE---SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTS 396 (442)
Q Consensus 321 ~l~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~ 396 (442)
.+++ .++.+++++++++++.+.|++++++++..++. ..++.+.+... + ..++.+. |.++||.+.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~-l~~~gi~v~~g 318 (382)
T 4hvk_A 249 ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI------E---GESIVLS-LDMAGIQASTG 318 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTC------C---HHHHHHH-HHHTTCBCBCC
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCC------C---HHHHHHH-HHHCCEEEeeC
Confidence 6543 35678899999999999999888888764332 24677776321 1 2356664 55679999887
Q ss_pred cCcccccC---------CC-----CCceEEEecCCCCHHHHHHHHHHHHHHHHHHhh
Q 013461 397 KRSMLDKC---------RL-----PVGIRLFVSAAHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 397 ~~~~~~~~---------~~-----~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
..+..... .. +..+|++++..+|++|+++++++|+++++++.+
T Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 319 SACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp --------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 54322110 00 245999999999999999999999999887654
No 95
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.90 E-value=6.6e-22 Score=195.48 Aligned_cols=305 Identities=17% Similarity=0.161 Sum_probs=201.6
Q ss_pred CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCC----CcEEEEcchHHHHH
Q 013461 108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGLSTMF 183 (442)
Q Consensus 108 G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~----e~~i~~~sG~~a~~ 183 (442)
|+++|||+++++ .+..+|.+.+++.+.++.... ++....|..++++.+++.+.+..|. ++++++++|++++.
T Consensus 30 ~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~---~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~ 105 (385)
T 1b5p_A 30 GVDLVALTAGEP-DFDTPEHVKEAARRALAQGKT---KYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF 105 (385)
T ss_dssp TCCCEECCCSSC-SSCCCHHHHHHHHHHHHTTCC---SCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred CCCEEEecCCCC-CCCCCHHHHHHHHHHHhcCCC---CCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHH
Confidence 567899988764 555678999999998865211 1222234444444444444444452 46788888899999
Q ss_pred hhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC-------CHHHHHHHHHhhcccc-------cc--------
Q 013461 184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADN-------KR-------- 241 (442)
Q Consensus 184 ~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-------d~~~Le~~l~~~~~~~-------~~-------- 241 (442)
.++.+++++||.|+++.++|..+...++..|.+++.++.+ |++++++.+++.++.. +.
T Consensus 106 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~ 185 (385)
T 1b5p_A 106 NLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEV 185 (385)
T ss_dssp HHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred HHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCCCCCCCcCHHH
Confidence 9999999999999999999999999999999999888753 5667766654322110 00
Q ss_pred ---------cccccccccCCC-------ccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCCcee
Q 013461 242 ---------SNSFGVLGRSGR-------GLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYV 302 (442)
Q Consensus 242 ---------a~~~g~~G~~g~-------g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~~~~ 302 (442)
.|++-++-+.-. .......+++ +.+++++||||++|+.| ||+++++++++.++.....+
T Consensus 186 l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~l~~~~~~~- 263 (385)
T 1b5p_A 186 LEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP-EHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQS- 263 (385)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCT-TTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCC-CCEEEEEechhhcCCcccceEEEEeCHHHHHHHHHHHhhc-
Confidence 222211111000 0111122222 66899999999998665 99999999988876542221
Q ss_pred ccCCCcHHHHHHHHHHHHH----HhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHH
Q 013461 303 FSASLPPYLASAAITAIDV----LEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLL 378 (442)
Q Consensus 303 ~s~s~~p~~aaaa~aal~~----l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 378 (442)
+.+.+++.+.++.++++. .+..++.+++++++++++.+.|+++ |+++..+..+.++++.+... + .+ .
T Consensus 264 -~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~---~~---~ 334 (385)
T 1b5p_A 264 -TTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPI-A---PD---E 334 (385)
T ss_dssp -TCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEECTTT-C---SS---H
T ss_pred -cCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecCCC-C---CC---H
Confidence 223456666666677753 2223457788899999999999887 88776554555667666321 1 01 2
Q ss_pred HHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHH
Q 013461 379 EDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 435 (442)
Q Consensus 379 ~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~ 435 (442)
.++++.++ ++||.+.++..+.. +..+||++. ++++++++++++|+++++
T Consensus 335 ~~l~~~l~-~~gv~v~~g~~f~~-----~~~iRis~~--~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 335 VRAAERLL-EAGVAVVPGTDFAA-----FGHVRLSYA--TSEENLRKALERFARVLG 383 (385)
T ss_dssp HHHHHHHH-HTTEECEESGGGTC-----TTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred HHHHHHHH-HCCeEEecccccCC-----CCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 35777655 67999998765432 356999987 689999999999987654
No 96
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.90 E-value=3.7e-22 Score=197.92 Aligned_cols=304 Identities=13% Similarity=0.130 Sum_probs=202.2
Q ss_pred CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCC-CCccCccccCcHHHHHHHHHHHhhhC----CCcEEEEcchHHHH
Q 013461 108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVG-SCGPRGFYGTIDVHLDCEARIAKFLG----TPDSILYSYGLSTM 182 (442)
Q Consensus 108 G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~-~~~~~~~~g~~~~~~~le~~lA~~~g----~e~~i~~~sG~~a~ 182 (442)
|+++|||++++ ..+..+|++++++.+++++.+.. ..++....|..++++.+++.+.+.+| .++++++++|++++
T Consensus 34 ~~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al 112 (398)
T 3ele_A 34 KENVYDFSIGN-PSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASL 112 (398)
T ss_dssp GGGCEECCSCC-CCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred CCCeEEeecCC-CCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHH
Confidence 56899998874 55667899999999999873211 11111233445556666666655555 35678888889999
Q ss_pred HhhhhhhccCC-CEEEeCCCchHHHHHHHHhcCCeEEEecCC------CHHHHHHHHHhhcccc-------cc-------
Q 013461 183 FSAIPCFCKKG-DLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADN-------KR------- 241 (442)
Q Consensus 183 ~~ai~a~~~~g-d~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~------d~~~Le~~l~~~~~~~-------~~------- 241 (442)
..++.+++++| |.|+++.++|.++...++..|.+++.++.+ |+++|++.+++.+... +.
T Consensus 113 ~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~ 192 (398)
T 3ele_A 113 SICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEE 192 (398)
T ss_dssp HHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHH
T ss_pred HHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHH
Confidence 99999999999 999999999999999999999999998865 6778877665422110 00
Q ss_pred --------c--------ccccccccC--------CCccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHH--
Q 013461 242 --------S--------NSFGVLGRS--------GRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVD-- 292 (442)
Q Consensus 242 --------a--------~~~g~~G~~--------g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~-- 292 (442)
+ |++-++-+. |....... ...+.+++++||||++|+.| ||+++++++++
T Consensus 193 ~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~ 270 (398)
T 3ele_A 193 TIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVT--KYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKA 270 (398)
T ss_dssp HHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGG--GTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHH
T ss_pred HHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChH--hhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHH
Confidence 1 333222111 11111111 11346799999999998666 99999987543
Q ss_pred ----HHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCC
Q 013461 293 ----HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKST 368 (442)
Q Consensus 293 ----~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~ 368 (442)
.+...... ....+.+++.++++.+.+ +.. ..+++++++++++.+.|+++ |+++..+..+.++++.++..
T Consensus 271 ~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l---~~~-~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~- 343 (398)
T 3ele_A 271 ELYAAVCGAGRA-LGYVCAPSLFQKMIVKCQ---GAT-GDINAYKENRDLLYEGLTRI-GYHCFKPDGAFYMFVKALED- 343 (398)
T ss_dssp HHHHHHHHHHHH-TTCCCSCHHHHHHHTTCT---TCC-CCHHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECSSS-
T ss_pred HHHHHHHHHhhh-ccccCCCHHHHHHHHHHh---cCH-HHHHHHHHHHHHHHHHHHHc-CCeecCCCeeEEEEEEcCCC-
Confidence 22211111 011233555555443333 332 25788899999999999887 88776554555577776421
Q ss_pred CCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 369 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 369 ~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
+ ..++.+. |.++||.+.++..+.. +..+||+++ +|+++|++++++|+++++++
T Consensus 344 -----~---~~~~~~~-l~~~gi~v~~g~~~~~-----~~~iRis~~--~~~e~i~~~l~~l~~~l~~~ 396 (398)
T 3ele_A 344 -----D---SNAFCEK-AKEEDVLIVAADGFGC-----PGWVRISYC--VDREMIKHSMPAFEKIYKKY 396 (398)
T ss_dssp -----C---HHHHHHH-HHTTTEECEESGGGTC-----TTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred -----C---HHHHHHH-HHHCCEEEeCccccCC-----CCeEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 1 2356664 5677999998776542 356999996 69999999999999998765
No 97
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.89 E-value=2.7e-22 Score=197.35 Aligned_cols=303 Identities=16% Similarity=0.137 Sum_probs=206.3
Q ss_pred CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC---CCcEEEEcchHHHHHh
Q 013461 108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG---TPDSILYSYGLSTMFS 184 (442)
Q Consensus 108 G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g---~e~~i~~~sG~~a~~~ 184 (442)
+..+.++..++++++..++. +++.+++.....+ |+......++++.+|++++ .++++++++|++|+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~ 96 (375)
T 3op7_A 26 GVSISSLTLEELFALSGTNP--EDFYKKLQGTKLN-------YGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLL 96 (375)
T ss_dssp CCSCCCCCHHHHHHHHTCCH--HHHHHHHHTSCCS-------SCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHH
T ss_pred cCCCCCccHHHHHhhcccch--HHHHHHHhcCCcC-------CCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHH
Confidence 33445555566666655443 5555666542222 2223334799999999874 3688999999999999
Q ss_pred hhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC-------CHHHHHHHHHhhcccccc----------------
Q 013461 185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKR---------------- 241 (442)
Q Consensus 185 ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~~---------------- 241 (442)
++.+++++||.|+++.++|.++...++..|++++.++.+ |+++|++.++..++....
T Consensus 97 ~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l 176 (375)
T 3op7_A 97 VLYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYL 176 (375)
T ss_dssp HHHHHCCTTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHH
T ss_pred HHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHH
Confidence 999999999999999999999999999999999888754 788888877542221000
Q ss_pred --------cccccccccCC-C-----ccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCCceecc
Q 013461 242 --------SNSFGVLGRSG-R-----GLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFS 304 (442)
Q Consensus 242 --------a~~~g~~G~~g-~-----g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~~~~~s 304 (442)
.|+.-++-+.- . +..... +..+.+++++||||++|+.| ||+++++++++.++.....+.
T Consensus 177 ~~i~~la~~~~~~li~De~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~-- 252 (375)
T 3op7_A 177 EELVEIASEVGAYILSDEVYRSFSELDVPSII--EVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTM-- 252 (375)
T ss_dssp HHHHHHHHTTTCEEEEECCSCCCSSSCCCCHH--HHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTT--
T ss_pred HHHHHHHHHcCCEEEEEcccccccccCCCchh--hhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhc--
Confidence 22222111100 0 000000 11245688999999998655 999999999998876543333
Q ss_pred CCCcHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHH
Q 013461 305 ASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIAD 383 (442)
Q Consensus 305 ~s~~p~~aaaa~aal~~l~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~ 383 (442)
.+.+++.++++.++++..++ .+..++.++++.+++.+.|++.+++.+..+..+.+.++.+.... + ..++++
T Consensus 253 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~ 324 (375)
T 3op7_A 253 ICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM-----P---MEDFCL 324 (375)
T ss_dssp SCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS-----C---HHHHHH
T ss_pred cCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC-----C---HHHHHH
Confidence 33467777777777775543 24466777889999999998877887765555666777774321 1 235677
Q ss_pred HHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHh
Q 013461 384 WALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 438 (442)
Q Consensus 384 ~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~ 438 (442)
.+++++||.+.++..+.. +..+|++++. +++++++++++|+++++++.
T Consensus 325 ~ll~~~gi~v~~g~~~~~-----~~~iRi~~~~--~~~~i~~~l~~l~~~l~~~~ 372 (375)
T 3op7_A 325 QLLQEHGVLLVPGNRFER-----DGYVRLGFAC--EQETLIKGLEKLSQFLRRFD 372 (375)
T ss_dssp HHHHHHCEECEEGGGGTC-----TTEEEECCCS--CHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHhCCEEEeChhhhCC-----CCeEEEEecC--CHHHHHHHHHHHHHHHHHHh
Confidence 666677999998876542 3569999875 56999999999999887653
No 98
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.89 E-value=1.2e-21 Score=192.05 Aligned_cols=296 Identities=13% Similarity=0.042 Sum_probs=200.8
Q ss_pred ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHHH
Q 013461 106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF 183 (442)
Q Consensus 106 ~~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~ 183 (442)
.+|+++|||+++. ..++.+|++++++.+++++. ..+ +. ....++++++|+++|.+ +++++++|++++.
T Consensus 21 ~~~~~~idl~~~~-~~~~~~~~v~~a~~~~~~~~-~~y-------~~-~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~ 90 (364)
T 1lc5_A 21 ISPDQLLDFSANI-NPLGMPVSVKRALIDNLDCI-ERY-------PD-ADYFHLHQALARHHQVPASWILAGNGETESIF 90 (364)
T ss_dssp SCGGGSEECSSCC-CTTCCCHHHHHHHHHTGGGG-GSC-------CC-TTCHHHHHHHHHHHTSCGGGEEEESSHHHHHH
T ss_pred CCccceEEecccc-CCCCCCHHHHHHHHHHHHHh-hcC-------CC-CCHHHHHHHHHHHHCcCHHHEEECCCHHHHHH
Confidence 3678899998775 34557899999999987651 111 11 12478999999999964 6777778889999
Q ss_pred hhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCCC---HHHHHHHHHhhcccccc-------------------
Q 013461 184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND---MDSLRNTLERVTADNKR------------------- 241 (442)
Q Consensus 184 ~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~d---~~~Le~~l~~~~~~~~~------------------- 241 (442)
.++.++ +||.|+++.++|.++...++..|.+++.++.++ ++.++++++..+++.+.
T Consensus 91 ~~~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l 168 (364)
T 1lc5_A 91 TVASGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLL 168 (364)
T ss_dssp HHHHHH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHH
T ss_pred HHHHHc--CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHH
Confidence 999888 779999999999999999999999999888652 11133344433222111
Q ss_pred --------ccccccccc--------CCCccccccCCCCCceeEEEEeccccccCCC---cEEE-cCHHhHHHHHhhCCce
Q 013461 242 --------SNSFGVLGR--------SGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT-GSARVVDHQRLSSSGY 301 (442)
Q Consensus 242 --------a~~~g~~G~--------~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~-g~~~~i~~l~~~~~~~ 301 (442)
.|+.-++-+ .+....+..+ ..+.|+++.||||++|+.| ||++ +++++++.++.....
T Consensus 169 ~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~- 245 (364)
T 1lc5_A 169 QAIADRCKSLNINLILDEAFIDFIPHETGFIPALK--DNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMP- 245 (364)
T ss_dssp HHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCT--TCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCT-
T ss_pred HHHHHHhhhcCcEEEEECcChhhccCccchhhHhc--cCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCCC-
Confidence 111111100 0111222211 2346899999999998666 9999 999999988765432
Q ss_pred eccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHH
Q 013461 302 VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDI 381 (442)
Q Consensus 302 ~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i 381 (442)
.+.+++.++++.++++..+..++.+++++++++++.+.|++++|+++. ++.++++++.++.. ..++
T Consensus 246 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g~~~~~~~~~~----------~~~l 311 (364)
T 1lc5_A 246 ---WSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCERE----------DIDL 311 (364)
T ss_dssp ---TCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESCT----------TCCH
T ss_pred ---CCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEEC-CCCCeEEEEECCCc----------HHHH
Confidence 245777777777776542223456778888999999999887788876 35678888877431 1146
Q ss_pred HHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 382 ADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 382 ~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
.+.+ .++||.+.++..+... .+..+||+++ +++|+++++++|++++++.
T Consensus 312 ~~~l-~~~gi~v~~g~~~~~~---~~~~iRis~~---~~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 312 QRRL-LTQRILIRSCANYPGL---DSRYYRVAIR---SAAQNERLLAALRNVLTGI 360 (364)
T ss_dssp HHHH-HTTTEECEECTTSTTC---CTTEEEEECC---CHHHHHHHHHHHHHHC---
T ss_pred HHHH-HHCCcEEeeCcccCCC---CCCEEEEEeC---CHHHHHHHHHHHHHHhhcc
Confidence 6654 4569999987654210 1346999985 7899999999999876543
No 99
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.89 E-value=2.1e-21 Score=191.01 Aligned_cols=313 Identities=13% Similarity=0.081 Sum_probs=205.9
Q ss_pred EEEeecCCCCCCCCChHHHHHHHHHHHh-cCCCCCccCccccCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHHHhhhh
Q 013461 111 VVNFASANYLGLIGHEKLLESCTSALEK-YGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIP 187 (442)
Q Consensus 111 ~id~~s~~~l~~~~~p~v~ea~~~~l~~-~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~~ai~ 187 (442)
|+|++++. ..+|++++++.+++++ |+...+.+...++..+...++++.+|+++|.+ +++++++|++++..++.
T Consensus 4 yld~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~ 79 (384)
T 1eg5_A 4 YFDNNATT----RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILK 79 (384)
T ss_dssp ECBTTTCC----CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHH
T ss_pred EEecCccC----CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHH
Confidence 55554432 3579999999999986 44433333333556778899999999999965 77888889999999999
Q ss_pred hhc----cCCCEEEeCCCchHHHHHHH---HhcCCeEEEecC-----CCHHHHHHHHHhhcccccc--------------
Q 013461 188 CFC----KKGDLIVADEGVHWGIQNGL---YLSRSTVVYFKH-----NDMDSLRNTLERVTADNKR-------------- 241 (442)
Q Consensus 188 a~~----~~gd~Vi~~~~~h~s~~~~~---~l~g~~v~~~~~-----~d~~~Le~~l~~~~~~~~~-------------- 241 (442)
++. ++||.|+++.+.|.++...+ +..|.+++.++. .|+++|++.+++.+.....
T Consensus 80 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~ 159 (384)
T 1eg5_A 80 TVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVE 159 (384)
T ss_dssp HHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHH
T ss_pred hhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHH
Confidence 987 79999999999999876665 677999998876 3678888777542211000
Q ss_pred -------ccc--ccccccCCCccc-cccCCCCCceeEEEEeccccccCCC-cEEEcCHHh--HHHHHhhCC-ceeccCCC
Q 013461 242 -------SNS--FGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARV--VDHQRLSSS-GYVFSASL 307 (442)
Q Consensus 242 -------a~~--~g~~G~~g~g~~-~~~~v~~~~~diii~S~sK~lg~~G-G~v~g~~~~--i~~l~~~~~-~~~~s~s~ 307 (442)
.|+ +-++-+.-.++. ...++...+.|+++.|++|.+|..| ||+++++++ ...+..... ......+.
T Consensus 160 ~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (384)
T 1eg5_A 160 DVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIRPLIHGGGQERGLRSGTQ 239 (384)
T ss_dssp HHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTSCCCCSBCSSCTTTTTBCSCC
T ss_pred HHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCceEEEEEcCCCccccccccCcccccccCCCC
Confidence 233 222211111110 1122322357999999999998876 999998875 221111000 00122345
Q ss_pred cHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHhhccCCCceeecCC---CCCEEEEEecCCCCCchhhHHHHHHHHH
Q 013461 308 PPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNP---ESPIVFLILEKSTGSMKNDLQLLEDIAD 383 (442)
Q Consensus 308 ~p~~aaaa~aal~~l~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~i~~ 383 (442)
++..++++.++++...+ .++++++++++++++.+.|++ +|+++..++ ...++++.+... + ..++.+
T Consensus 240 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~ 309 (384)
T 1eg5_A 240 NVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTLSVSFPNI------R---GSTLQN 309 (384)
T ss_dssp CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEEEEECTTC------C---HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEEEEEeCCC------C---HHHHHH
Confidence 67777777788887543 356888999999999999988 588876432 234677766321 1 235666
Q ss_pred HHHHhCCEEEeeccCccccc---------CCC-----CCceEEEecCCCCHHHHHHHHHHHHHHHHHHh
Q 013461 384 WALKEDGVFVVTSKRSMLDK---------CRL-----PVGIRLFVSAAHSEADLVKACESLKRISAVVL 438 (442)
Q Consensus 384 ~~L~~~GV~v~~~~~~~~~~---------~~~-----~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~ 438 (442)
. |.++||.+.++..+.... ... +..+||+++..+|++|+++++++|+++++++.
T Consensus 310 ~-l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 377 (384)
T 1eg5_A 310 L-LSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLD 377 (384)
T ss_dssp H-HHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred H-HhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5 556799998865321100 000 13599999988999999999999999987653
No 100
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.89 E-value=4.5e-21 Score=187.42 Aligned_cols=290 Identities=14% Similarity=0.092 Sum_probs=201.3
Q ss_pred ECCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCC--CcEEEEcchHHHH
Q 013461 106 ISGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--PDSILYSYGLSTM 182 (442)
Q Consensus 106 ~~G~~~id~~s~-~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~--e~~i~~~sG~~a~ 182 (442)
.+|+++|||+++ +++ +.+|++++++.++++++. .+. .+...++++++|+++|. ++++++++|++++
T Consensus 23 ~~~~~~idl~~~~~~~--~~~~~v~~a~~~~~~~~~-~y~--------~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al 91 (361)
T 3ftb_A 23 FKGRELLDYSSNINPL--GIPKSFLNNIDEGIKNLG-VYP--------DVNYRRLNKSIENYLKLKDIGIVLGNGASEII 91 (361)
T ss_dssp -----CEETTCCCCTT--CSCHHHHTTHHHHHHGGG-SCC--------CTTCHHHHHHHHHHHTCCSCEEEEESSHHHHH
T ss_pred cCCCCEEEecCCCCCC--CCCHHHHHHHHHHHHHhc-CCC--------CccHHHHHHHHHHHhCCCcceEEEcCCHHHHH
Confidence 489999999877 544 457999999999998731 111 12347999999999984 4677778889999
Q ss_pred HhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC-----CHHHHHHHHHhhcccccc----------------
Q 013461 183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKR---------------- 241 (442)
Q Consensus 183 ~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~~---------------- 241 (442)
..++.++ |.|+++.++|.++...++..|.+++.++.+ +++++++.+++ +.....
T Consensus 92 ~~~~~~~----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l 166 (361)
T 3ftb_A 92 ELSISLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKF 166 (361)
T ss_dssp HHHHTTC----SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHH
T ss_pred HHHHHHc----CcEEEecCChHHHHHHHHHcCCeEEEeecCcccCCCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHH
Confidence 9999888 999999999999999999999999888743 46788877765 221100
Q ss_pred ------------------cccccccccCCCccccccCCCCCceeEEEEeccccccCCC---cEEE-cCHHhHHHHHhhCC
Q 013461 242 ------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT-GSARVVDHQRLSSS 299 (442)
Q Consensus 242 ------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~-g~~~~i~~l~~~~~ 299 (442)
+|+.+..+ .+.+.....+. .+.++++.|+||++|+.| ||++ +++++++.++....
T Consensus 167 ~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~ 243 (361)
T 3ftb_A 167 IHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKN--YSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQN 243 (361)
T ss_dssp HHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTT--CSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSC
T ss_pred HHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhccc--CCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCC
Confidence 22111111 11122222221 245688999999998655 8988 99999999876543
Q ss_pred ceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCce-eecCCCCCEEEEEecCCCCCchhhHHHH
Q 013461 300 GYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLS-IASNPESPIVFLILEKSTGSMKNDLQLL 378 (442)
Q Consensus 300 ~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 378 (442)
. .+.+++.++++.++++..+..++.+++++++.+++.+.|++++++. +. .+.++++++.+... + .
T Consensus 244 ~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~------~---~ 309 (361)
T 3ftb_A 244 P----WNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVF-SPHANFVLCRLENI------S---G 309 (361)
T ss_dssp T----TCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEE-CCSSSEEEEEESSS------C---H
T ss_pred C----CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceec-CCCCeEEEEEcCCC------C---H
Confidence 2 2457777777777776433335677888999999999999887887 55 45778888887431 1 2
Q ss_pred HHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHH
Q 013461 379 EDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 435 (442)
Q Consensus 379 ~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~ 435 (442)
.++.+.++ ++||.+.++..+... .+..+|++++ +++|+++++++|+++.+
T Consensus 310 ~~l~~~l~-~~gi~v~~g~~~~~~---~~~~iRis~~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 310 EKLYDSLL-KEDIVIRRCCNFIGL---DDSFVRFAIK---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp HHHHHHHH-TTTEECEECTTSTTC---CTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCeEEeeCccCCCC---CCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence 35777644 559999987654210 1345999986 88999999999987754
No 101
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.89 E-value=1.3e-22 Score=205.34 Aligned_cols=306 Identities=17% Similarity=0.144 Sum_probs=184.1
Q ss_pred eEEEe-ecCCCCCCCCChHHHHHHHHHHH-hcCCCCCccCccccCcHHHHHHH----HHHHhhhCCCc----E-EEEcch
Q 013461 110 EVVNF-ASANYLGLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTIDVHLDCE----ARIAKFLGTPD----S-ILYSYG 178 (442)
Q Consensus 110 ~~id~-~s~~~l~~~~~p~v~ea~~~~l~-~~g~~~~~~~~~~g~~~~~~~le----~~lA~~~g~e~----~-i~~~sG 178 (442)
+.|++ +|.||+ +|+|++|+.+.+. +|+.|+.+.+...|. +.+.++| +++++++|.+. + ++++||
T Consensus 55 ~~i~lias~n~~----~~~V~eA~~~~l~~~y~~G~~g~r~~~G~-~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sG 129 (490)
T 2a7v_A 55 RGLELIASENFC----SRAALEALGSCLNNKYSEGYPGKRYYGGA-EVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSG 129 (490)
T ss_dssp HSEECCTTCCCC----CHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSH
T ss_pred cCceEECCCCCC----CHHHHHHHHHHHcCCCccCCCcccccCcc-HHHHHHHHHHHHHHHHHcCCCcccCceEEeCCch
Confidence 34555 788884 7999999999875 487787777754444 4445555 99999999886 4 445699
Q ss_pred HHHHHhhhhhhccCCCEEEeCCCchHHHHH--------HHHhcCCe--EEEec------CCCHHHHHHHHHhhcccccc-
Q 013461 179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQN--------GLYLSRST--VVYFK------HNDMDSLRNTLERVTADNKR- 241 (442)
Q Consensus 179 ~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~--------~~~l~g~~--v~~~~------~~d~~~Le~~l~~~~~~~~~- 241 (442)
++||..++.++++|||.|+++.+.|.+... .+.++|.. +++++ +.|++++++.++....+...
T Consensus 130 t~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~ 209 (490)
T 2a7v_A 130 SPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIA 209 (490)
T ss_dssp HHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEE
Confidence 999999999999999999999988865321 23455543 34443 34899999988753322111
Q ss_pred -----------------------------cccccccccCCCccccccCCCCCceeEEEEeccccc-cCCCcEEEcCHH--
Q 013461 242 -----------------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSAR-- 289 (442)
Q Consensus 242 -----------------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~l-g~~GG~v~g~~~-- 289 (442)
+|.+|.++. |.. . .+.+.+|+++.|++|+| |..||+++++++
T Consensus 210 ~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~---g~~--~-~~~~~aDiv~~S~hK~l~Gp~GG~i~~~~~~~ 283 (490)
T 2a7v_A 210 GTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAA---KVI--P-SPFKHADIVTTTTHKTLRGARSGLIFYRKGVK 283 (490)
T ss_dssp CCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHT---TSS--C-CGGGTCSEEEEESSGGGCSCSCEEEEEECSEE
T ss_pred cCCCCCCcccHHHHHHHHHHcCCEEEEccccccccccC---CcC--C-CCCCCCCEEEECCcccCccccchheeeccchh
Confidence 333332211 110 0 01125799999999999 567899998764
Q ss_pred -------------hHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHhhccCCCceeec-
Q 013461 290 -------------VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIAS- 353 (442)
Q Consensus 290 -------------~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~- 353 (442)
+.+.++....+...++ +++...++..+|++... +.+++.+++.+++++|.+.|.+. |+++..
T Consensus 284 ~~~~~~~~~~~~~l~~~i~~~~~~g~qgg-p~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~ 361 (490)
T 2a7v_A 284 AVDPKTGREIPYTFEDRINFAVFPSLQGG-PHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSG 361 (490)
T ss_dssp EEETTTEEEEECCCHHHHHHHHTTTTCCS-CCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGG
T ss_pred cccccccchhhHHHHHHHHHHhcccCCCC-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcEEecC
Confidence 4555554323333232 33343444444555442 33568889999999999999986 998864
Q ss_pred CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEec----CCCCHHHHHHHHHH
Q 013461 354 NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS----AAHSEADLVKACES 429 (442)
Q Consensus 354 ~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~----~~~t~eei~~~i~~ 429 (442)
..+++++++.+... + .+ ..++.+ .|++.||.+.....|.......|++|||..+ ..++++|++++++.
T Consensus 362 ~t~t~lv~vdl~~~-g---~~---~~~~~~-~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~ 433 (490)
T 2a7v_A 362 GTDNHLVLVDLRPK-G---LD---GARAER-VLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDF 433 (490)
T ss_dssp SCSSSEEEEECTTT-T---CC---HHHHHH-HHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCC-C---CC---HHHHHH-HHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHH
Confidence 34678888887532 1 01 123444 5777899998765443211123577999764 46899999999999
Q ss_pred HHHHHHH
Q 013461 430 LKRISAV 436 (442)
Q Consensus 430 l~~~~~~ 436 (442)
|.+++..
T Consensus 434 i~~~l~~ 440 (490)
T 2a7v_A 434 IDEGVNI 440 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 102
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.82 E-value=5.1e-25 Score=218.37 Aligned_cols=318 Identities=10% Similarity=0.036 Sum_probs=211.3
Q ss_pred eeecCCCCeEE-ECCe--eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh----
Q 013461 95 VLESAAGPHTI-ISGK--EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL---- 167 (442)
Q Consensus 95 ~~~~~~g~~~~-~~G~--~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~---- 167 (442)
+..+++|+++| .+|+ ++|||+++++ +++.+|++++++.+++.+...++ +.. ..++++.+++++
T Consensus 14 ~~~~~~g~~~~d~~g~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y-------~~~--~~~l~~~la~~l~~~~ 83 (392)
T 3b1d_A 14 PNRLSHHTYKWKETETDPQLLPAWIADM-DFEVMPEVKQAIHDYAEQLVYGY-------TYA--SDELLQAVLDWEKSEH 83 (392)
Confidence 34558899999 4888 9999988875 77788999999999986521111 111 456666666654
Q ss_pred C----CCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC--------CHHHHHHHHHhh
Q 013461 168 G----TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN--------DMDSLRNTLERV 235 (442)
Q Consensus 168 g----~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~--------d~~~Le~~l~~~ 235 (442)
| .++++++++|++++..++.++.++||.|+++.+.|.++...++..|.+++.++.+ |++++++.+++.
T Consensus 84 g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~ 163 (392)
T 3b1d_A 84 QYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVEN 163 (392)
Confidence 4 3567777888899999999999999999999999999988888888888877652 566777766521
Q ss_pred cccccc-------------------------ccccccc--------ccCCCccccccCCCC--CceeEEEEeccccccCC
Q 013461 236 TADNKR-------------------------SNSFGVL--------GRSGRGLTEHCGVPV--DKIDIVTAAMGHALATE 280 (442)
Q Consensus 236 ~~~~~~-------------------------a~~~g~~--------G~~g~g~~~~~~v~~--~~~diii~S~sK~lg~~ 280 (442)
...... .|+.-++ ...|.+......+.+ .+.+++++||||++|+.
T Consensus 164 ~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 243 (392)
T 3b1d_A 164 DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIA 243 (392)
Confidence 111000 1111111 001111122223322 35678999999999866
Q ss_pred C---cEEEcCH-HhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHhhcc-CCCceeecC
Q 013461 281 G---GFCTGSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSD-IHGLSIASN 354 (442)
Q Consensus 281 G---G~v~g~~-~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~-~~~~~~~~l~~~~~~l~~~L~~-~~g~~~~~~ 354 (442)
| ||+++++ ++++.++.....+.++ +.+++.++++.++++..+ ..++++++++++++++.+.|++ ++++++..+
T Consensus 244 G~r~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 322 (392)
T 3b1d_A 244 GTKNSYAIIENPTLCAQFKHQQLVNNHH-EVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKP 322 (392)
Confidence 6 9998865 5888877654443322 246666666777776422 2345777888899999999987 677776644
Q ss_pred CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 355 PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 355 ~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
..+.++++.++.. .....++++.+++++||.+.++..+... .+..+||+++. +++++++++++|++++
T Consensus 323 ~~~~~~~i~~~~~-------~~~~~~l~~~l~~~~gi~v~~g~~f~~~---~~~~iRi~~~~--~~e~i~~~l~~l~~~l 390 (392)
T 3b1d_A 323 QGTYLIWLDFSDY-------GLTDDALFTLLHDQAKVILNRGSDYGSE---GELHARLNIAA--PKSLVEEICKRIVCCL 390 (392)
Confidence 3344445666321 0113357776555679999987654310 13459999875 6899999999998876
Q ss_pred H
Q 013461 435 A 435 (442)
Q Consensus 435 ~ 435 (442)
+
T Consensus 391 ~ 391 (392)
T 3b1d_A 391 P 391 (392)
Confidence 4
No 103
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.89 E-value=5.8e-21 Score=184.82 Aligned_cols=289 Identities=15% Similarity=0.122 Sum_probs=197.5
Q ss_pred CCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHHH
Q 013461 107 SGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF 183 (442)
Q Consensus 107 ~G~~~id~~s~-~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~ 183 (442)
+.+++|||++| |+++ .+|.+++++.+.+..+. . | ......++++.+|+++|.+ +.++++++++++.
T Consensus 14 ~~~~~i~l~~n~~~~~--~~~~v~~a~~~~~~~~~-~-------y-~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~ 82 (337)
T 3p1t_A 14 AAAQAVCLAFNENPEA--VEPRVQAAIAAAAARIN-R-------Y-PFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFD 82 (337)
T ss_dssp CCCCCEECSSCCCCSC--CCHHHHHHHHHHGGGTT-S-------C-CTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHH
T ss_pred CCCCceEeeCCCCCCC--CCHHHHHHHHHhhhhhc-c-------C-CCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHH
Confidence 45679999888 6655 57999999998876521 1 1 1245789999999999964 5566666678888
Q ss_pred hhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC-----CHHHHHHHHHhh-----cccccc------------
Q 013461 184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERV-----TADNKR------------ 241 (442)
Q Consensus 184 ~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-----d~~~Le~~l~~~-----~~~~~~------------ 241 (442)
.++.++ +||.|+++.++|.++...++..|.+++.++.+ |++++++..+.. .+.++.
T Consensus 83 ~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l 160 (337)
T 3p1t_A 83 RISAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQVSRDDCVVLANPSNPTGQALSAGELDQL 160 (337)
T ss_dssp HHHHHS--TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCTTSSBCHHHHTTCCTTEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred HHHHhc--CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHhhcCCCEEEEeCCCCCCCCCCCHHHHHHH
Confidence 888887 99999999999999999999999999988743 566665541100 000000
Q ss_pred --cccccccccCCCccc--cccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCCceeccCCCcHHHHHH
Q 013461 242 --SNSFGVLGRSGRGLT--EHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASA 314 (442)
Q Consensus 242 --a~~~g~~G~~g~g~~--~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaa 314 (442)
.++.-++.+....+. ........+.+++++||||++|+.| ||+++++++++.++.... ..+.+++.+++
T Consensus 161 ~~~~~~~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~----~~~~~~~~~~a 236 (337)
T 3p1t_A 161 RQRAGKLLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQW----FCNVGTLDLHA 236 (337)
T ss_dssp HHHCSEEEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTSC----TTCSCHHHHHH
T ss_pred HHhCCcEEEECCChhhccccccccccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhcC----CCCCCHHHHHH
Confidence 122111111110111 0111122356899999999998666 999999999998876432 22346666666
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEe
Q 013461 315 AITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV 394 (442)
Q Consensus 315 a~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~ 394 (442)
+.++++..+...+.++++.++++++.+.|+++ |+++.. +.++++++.... . .++.+ .|+++||.+.
T Consensus 237 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~------~-----~~~~~-~l~~~gi~v~ 302 (337)
T 3p1t_A 237 LEAALDNDRAREAHIAKTLAQRRRVADALRGL-GYRVAS-SEANFVLVENAA------G-----ERTLR-FLRERGIQVK 302 (337)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCC-CSSSEEEEECTT------T-----HHHHH-HHHHTTEECE
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cCEECC-CCCeEEEEEcCC------H-----HHHHH-HHHHCCeEEE
Confidence 66666543333456677888889999999887 887753 567777776532 1 13444 4667799999
Q ss_pred eccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 395 TSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 395 ~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
++..+.. +..+|++++ +++|+++++++|+++.
T Consensus 303 ~g~~~~~-----~~~iRis~~---~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 303 DAGQFGL-----HHHIRISIG---REEDNDRLLAALAEYS 334 (337)
T ss_dssp EGGGGTC-----CSEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred ECccCCC-----CCeEEEecC---CHHHHHHHHHHHHHHh
Confidence 9876542 356999987 7999999999998764
No 104
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.89 E-value=6.5e-21 Score=187.79 Aligned_cols=290 Identities=16% Similarity=0.159 Sum_probs=202.6
Q ss_pred CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC--c-EEEEcchHHHHHhhhhhhccCCCEEEeCC
Q 013461 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--D-SILYSYGLSTMFSAIPCFCKKGDLIVADE 200 (442)
Q Consensus 124 ~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e--~-~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~ 200 (442)
.+|++.+++.+++.. .+ ++ ...+.+.++++.+++++|.+ + ++++++|++|+..++.+++++||.|+++.
T Consensus 31 ~~~~v~~a~~~~~~~---~~-~~----~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~ 102 (386)
T 2dr1_A 31 CFPEVLEIMKVQMFS---HR-SK----EYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTI 102 (386)
T ss_dssp CCHHHHHHTTSCCCC---TT-SH----HHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CcHHHHHHHhccccc---cc-CH----HHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEc
Confidence 357888777655432 11 11 12578899999999999975 4 56678889999999999999999999999
Q ss_pred CchHH--HHHHHHhcCCeEEEecC-----CCHHHHHHHHHhhcccccc------------------------cccccccc
Q 013461 201 GVHWG--IQNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKR------------------------SNSFGVLG 249 (442)
Q Consensus 201 ~~h~s--~~~~~~l~g~~v~~~~~-----~d~~~Le~~l~~~~~~~~~------------------------a~~~g~~G 249 (442)
+.|.+ +...++..|++++.++. .|+++|++.+++.. +.+. .|+.-++-
T Consensus 103 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 181 (386)
T 2dr1_A 103 IGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNP-DVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFV 181 (386)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCT-TCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEE
T ss_pred CCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCC-CCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEE
Confidence 99988 77888889999988886 57899999886411 1111 22221111
Q ss_pred cC--CCccccccCCCCCceeEEEEeccccccCC-C-cEEEcCHHhHHHHHhh--------------CC--ceeccCCCcH
Q 013461 250 RS--GRGLTEHCGVPVDKIDIVTAAMGHALATE-G-GFCTGSARVVDHQRLS--------------SS--GYVFSASLPP 309 (442)
Q Consensus 250 ~~--g~g~~~~~~v~~~~~diii~S~sK~lg~~-G-G~v~g~~~~i~~l~~~--------------~~--~~~~s~s~~p 309 (442)
+. +.|.. ..++...++|+++.|++|+++++ | ||+++++++++.++.. .. ......+.++
T Consensus 182 D~a~~~~~~-~~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (386)
T 2dr1_A 182 DAVSAMGGA-DIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPM 260 (386)
T ss_dssp ECTTTBTTB-CCCTTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCH
T ss_pred EccccccCc-cccccccCCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCH
Confidence 11 11111 12232235799999999999864 4 8999999988876320 00 0112334577
Q ss_pred HHHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHHhhccCCCceeecCC---CCCEEEEEecCCCCCchhhHHHHHHHHH
Q 013461 310 YLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGLSIASNP---ESPIVFLILEKSTGSMKNDLQLLEDIAD 383 (442)
Q Consensus 310 ~~aaaa~aal~~l~~~---~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~i~~ 383 (442)
..++++.++++.+++. ++++++++++++++.+.|+++ |+++..+. .++++++.++... + ..++++
T Consensus 261 ~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~ 331 (386)
T 2dr1_A 261 PQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLTPPGI-----K---GDEVYE 331 (386)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEECCTTC-----C---HHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEcCCCC-----C---HHHHHH
Confidence 7777778888877543 568899999999999999987 88776432 3678888774211 1 235777
Q ss_pred HHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHh
Q 013461 384 WALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 438 (442)
Q Consensus 384 ~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~ 438 (442)
.+++ +||.+.++..+. .+..+|++++..+|++|+++++++|+++++++.
T Consensus 332 ~l~~-~gi~v~~~~~~~-----~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 332 AMRK-RGFELAKGYGSV-----KEKTFRIGHMGYMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp HHHH-TTEECEECCGGG-----TTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-CCeEEecCcccc-----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 6555 499999876432 134599999998999999999999999987754
No 105
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.88 E-value=7.1e-21 Score=194.60 Aligned_cols=309 Identities=11% Similarity=0.063 Sum_probs=203.5
Q ss_pred ChHHHHHHHHHHHhcC-CCCCccCccccCcHHHHHHHHHHHhhhC----CCcEEEEcchHHHHHhhhhhhc-cCCCEEEe
Q 013461 125 HEKLLESCTSALEKYG-VGSCGPRGFYGTIDVHLDCEARIAKFLG----TPDSILYSYGLSTMFSAIPCFC-KKGDLIVA 198 (442)
Q Consensus 125 ~p~v~ea~~~~l~~~g-~~~~~~~~~~g~~~~~~~le~~lA~~~g----~e~~i~~~sG~~a~~~ai~a~~-~~gd~Vi~ 198 (442)
++.+++++.+.+.+++ .+..++....|..+++..+++.+.+..| .++++++++|++++..++.+++ ++||.|++
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 187 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILV 187 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEE
Confidence 5678888888888753 2334444445565666666666655545 3578888888999999999998 89999999
Q ss_pred CCCchHHHHHHHHhcCCeEEEec-------CCCHHHHHHHHHhhcc---cccc---------------------------
Q 013461 199 DEGVHWGIQNGLYLSRSTVVYFK-------HNDMDSLRNTLERVTA---DNKR--------------------------- 241 (442)
Q Consensus 199 ~~~~h~s~~~~~~l~g~~v~~~~-------~~d~~~Le~~l~~~~~---~~~~--------------------------- 241 (442)
+.++|.++..+++..|++++.++ +.|+++|++.+++... ..+.
T Consensus 188 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~ 267 (500)
T 3tcm_A 188 PIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCK 267 (500)
T ss_dssp EESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred eCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHH
Confidence 99999999999999999998887 4589999999886311 0000
Q ss_pred ----------cccccccccCCC--cc---ccccCCCCCc-eeEEEEeccccc-cC---CCcEEEc---CHHhHHHHHhhC
Q 013461 242 ----------SNSFGVLGRSGR--GL---TEHCGVPVDK-IDIVTAAMGHAL-AT---EGGFCTG---SARVVDHQRLSS 298 (442)
Q Consensus 242 ----------a~~~g~~G~~g~--g~---~~~~~v~~~~-~diii~S~sK~l-g~---~GG~v~g---~~~~i~~l~~~~ 298 (442)
+|+.++++.... .+ ...++...++ ..|+++||||++ |. .+||+++ ++++++.+....
T Consensus 268 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 347 (500)
T 3tcm_A 268 NEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIA 347 (500)
T ss_dssp HHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHH
T ss_pred HcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHH
Confidence 333333321111 10 0112211122 357889999998 44 4599887 888988876543
Q ss_pred CceeccCCCcHHHHHHHHHHHH-----------HHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCC
Q 013461 299 SGYVFSASLPPYLASAAITAID-----------VLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS 367 (442)
Q Consensus 299 ~~~~~s~s~~p~~aaaa~aal~-----------~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~ 367 (442)
. ...+.++..++++..+++ +.++.+.++++++++++++.+.|++++|+++..+..+.+.++.+..+
T Consensus 348 ~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~lp 424 (500)
T 3tcm_A 348 S---VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLP 424 (500)
T ss_dssp H---TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCEECCC
T ss_pred h---cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeeeecCc
Confidence 1 122335555555555553 33344567889999999999999988899887554555556545322
Q ss_pred CCCchh----hHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013461 368 TGSMKN----DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD 440 (442)
Q Consensus 368 ~~~~~~----~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~~ 440 (442)
...... .......++.++|++.||++.++..+..... +..+|+++. ++++++++++++|++++++++++
T Consensus 425 ~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g--~~~iRis~~--~~~e~i~~~i~~l~~~~~~~~~~ 497 (500)
T 3tcm_A 425 QKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPG--TWHFRCTIL--PQEDKIPAVISRFTVFHEAFMSE 497 (500)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTT--CCBEEEESC--SCTTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCC--CCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 100000 0000123345567777999999877653211 245999999 78999999999999999887765
No 106
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.88 E-value=2.2e-21 Score=192.72 Aligned_cols=308 Identities=10% Similarity=0.052 Sum_probs=203.1
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCcccc--CcHHHHHHHHHHHhhhCCC--cEEEEcchHHHHHh
Q 013461 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG--TIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFS 184 (442)
Q Consensus 109 ~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g--~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~~ 184 (442)
..++|++++. ..+|++++++.+++.++.....+ ...++ ..+...++++.+|+++|.+ +++++++|++++..
T Consensus 27 ~~~ld~~~~~----~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~ 101 (406)
T 3cai_A 27 WVHFDAPAGM----LIPDSVATTVSTAFRRSGASTVG-AHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSL 101 (406)
T ss_dssp CEECBGGGCC----CCCHHHHHHHHHHHHHCCSSSCS-SSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHH
T ss_pred eEEEeCCCcC----CCCHHHHHHHHHHHHhcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHH
Confidence 4567766544 35799999999999874321111 11122 4577899999999999975 66777778899998
Q ss_pred hhhhh---ccCCCEEEeCCCchHHHHHHHHh----cCCeEEEecCC------CHHHHHHHHHhhcccccc----------
Q 013461 185 AIPCF---CKKGDLIVADEGVHWGIQNGLYL----SRSTVVYFKHN------DMDSLRNTLERVTADNKR---------- 241 (442)
Q Consensus 185 ai~a~---~~~gd~Vi~~~~~h~s~~~~~~l----~g~~v~~~~~~------d~~~Le~~l~~~~~~~~~---------- 241 (442)
++.++ .++||.|+++.+.|.++...+.. .|.+++.++.+ |+++|++.+++.+.-...
T Consensus 102 ~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~ 181 (406)
T 3cai_A 102 LAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGV 181 (406)
T ss_dssp HHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBB
T ss_pred HHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCcccc
Confidence 88877 78999999999999887665543 68899988875 788888877542211100
Q ss_pred -----------ccccccccc--CCCccccccCCCCCceeEEEEeccccccCCCc-EEEcCHHhHHHHHhhCCc------e
Q 013461 242 -----------SNSFGVLGR--SGRGLTEHCGVPVDKIDIVTAAMGHALATEGG-FCTGSARVVDHQRLSSSG------Y 301 (442)
Q Consensus 242 -----------a~~~g~~G~--~g~g~~~~~~v~~~~~diii~S~sK~lg~~GG-~v~g~~~~i~~l~~~~~~------~ 301 (442)
.++.-++-+ .+.|.. .+++...++|+++.|++|.+|..+| ++++++++++.++..... .
T Consensus 182 ~~l~~i~~l~~~~~~~li~D~a~~~g~~-~~~~~~~~~d~~~~s~~K~~g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (406)
T 3cai_A 182 TDLRAMTKLVHDVGALVVVDHSAAAPYR-LLDIRETDADVVTVNAHAWGGPPIGAMVFRDPSVMNSFGSVSTNPYATGPA 260 (406)
T ss_dssp CCCHHHHHHHHHTTCEEEEECTTTTTTC-CCCHHHHCCSEEEEEGGGGTSCSCEEEEESCHHHHHTSCCCCSCTTCCGGG
T ss_pred CCHHHHHHHHHHcCCEEEEEcccccCCC-CCCchhcCCCEEEeehhhhcCCCcCeEEEEehHHHhhcCCcccCCCCCccc
Confidence 122111111 111110 0111112468999999999886678 999999888766543210 0
Q ss_pred ec-cCCCcHHHHHHHHHHHHHHhc----------------ChHHHHHHHHHHHHHHHhhccCCCceeecCC--CCCEEEE
Q 013461 302 VF-SASLPPYLASAAITAIDVLEE----------------NPDLITKLKKNTAILRTGLSDIHGLSIASNP--ESPIVFL 362 (442)
Q Consensus 302 ~~-s~s~~p~~aaaa~aal~~l~~----------------~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~--~~~i~~~ 362 (442)
.+ .++.++..++++.++++.+++ .++++++++++++++.+.|++++++++..+. .++++++
T Consensus 261 ~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 340 (406)
T 3cai_A 261 RLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSF 340 (406)
T ss_dssp GGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEE
T ss_pred cccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEE
Confidence 12 234566666666677877654 2467788889999999999988788776432 3677777
Q ss_pred EecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCccc----ccCCCCCceEEEecCCCCHHHHHHHHHHHHH
Q 013461 363 ILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML----DKCRLPVGIRLFVSAAHSEADLVKACESLKR 432 (442)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~----~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~ 432 (442)
.+... + ..++.+. |.++||.+.++..+.. .....+..+|++++..+|++|+++++++|++
T Consensus 341 ~~~~~------~---~~~~~~~-L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 341 AVHKV------P---ADRVVQR-LADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp EETTB------C---HHHHHHH-HHHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred EECCc------C---HHHHHHH-HHHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 76421 1 2356665 4567999988652110 0000024599999999999999999999875
No 107
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.88 E-value=1.1e-21 Score=194.90 Aligned_cols=308 Identities=17% Similarity=0.162 Sum_probs=206.9
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHH-hcCCCCCccCccccCcHHHHHH----HHHHHhhhCCCcEE-EEcchHHHH
Q 013461 109 KEVVNFASANYLGLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTIDVHLDC----EARIAKFLGTPDSI-LYSYGLSTM 182 (442)
Q Consensus 109 ~~~id~~s~~~l~~~~~p~v~ea~~~~l~-~~g~~~~~~~~~~g~~~~~~~l----e~~lA~~~g~e~~i-~~~sG~~a~ 182 (442)
+.++|+++++++ +|++++++.+++. .++.++++++...|.. ...++ ++++++++|.+... ++++|++++
T Consensus 24 ~~~~~~~~~~~~----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~ 98 (405)
T 2vi8_A 24 AKIELIASENFV----SRAVMEAQGSVLTNKYAEGYPGRRYYGGCE-YVDIVEELARERAKQLFGAEHANVQPHSGAQAN 98 (405)
T ss_dssp HSEECCTTCCCC----CHHHHHHHTSGGGGCCCCEETTEESSSCCH-HHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred cceeeccCcccC----CHHHHHHHHHHhhcccccCCCCccccccch-HHHHHHHHHHHHHHHHhCCCceEEEecCcHHHH
Confidence 457888888876 7999999999986 5555444433333322 23444 47999999988664 468999999
Q ss_pred HhhhhhhccCCCEEEeCCCchHHHHH-H--HHhcC--CeEEEecC------CCHHHHHHHHHhhcccccc----------
Q 013461 183 FSAIPCFCKKGDLIVADEGVHWGIQN-G--LYLSR--STVVYFKH------NDMDSLRNTLERVTADNKR---------- 241 (442)
Q Consensus 183 ~~ai~a~~~~gd~Vi~~~~~h~s~~~-~--~~l~g--~~v~~~~~------~d~~~Le~~l~~~~~~~~~---------- 241 (442)
..++.++.++||.|+++.++|+++.. + +...| .+++.++. .|++++++.+++.......
T Consensus 99 ~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~~~ 178 (405)
T 2vi8_A 99 MAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAAAYPRII 178 (405)
T ss_dssp HHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCCSCC
T ss_pred HHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEEeCCCCCccC
Confidence 99999999999999999999987643 1 12333 36666653 3788998888752111000
Q ss_pred --------------------cccccccccCCCccccccCCCCCceeEEEEecccccc-CCCcEEEcCHHhHHHHHhhCCc
Q 013461 242 --------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSARVVDHQRLSSSG 300 (442)
Q Consensus 242 --------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg-~~GG~v~g~~~~i~~l~~~~~~ 300 (442)
+|++|..+. +.. ..++ ...|+++.|+||+++ ..|||+++++++++.++.....
T Consensus 179 ~l~~i~~l~~~~~~~li~Dea~~~g~~~~---~~~-~~~~--~~~di~~~s~sK~~~g~~gG~~~~~~~~~~~l~~~~~~ 252 (405)
T 2vi8_A 179 DFAKFREIADEVGAYLMVDMAHIAGLVAA---GLH-PNPV--PYAHFVTTTTHKTLRGPRGGMILCQEQFAKQIDKAIFP 252 (405)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTTHHHHHT---TSS-CCST--TTCSEEEEESSSTTCCCSCEEEEECHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCEEEEEcccccccccc---CcC-CCcc--ccCCEEEEeccccCCCCCCeEEEEcHHHHHHHHhhhcc
Confidence 222222211 111 1111 246899999999997 7789999999998887654334
Q ss_pred eeccCCCcHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHhhccCCCceeecC-CCCCEEEEEecCCCCCchhhHHH
Q 013461 301 YVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASN-PESPIVFLILEKSTGSMKNDLQL 377 (442)
Q Consensus 301 ~~~s~s~~p~~aaaa~aal~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~ 377 (442)
+.++ +.++..++++.++++.++. .++++++++++++++.+.|+++ |+++..+ ..++++++.+... + .+
T Consensus 253 ~~~~-~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~---~~--- 323 (405)
T 2vi8_A 253 GIQG-GPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRPQ-Q---LT--- 323 (405)
T ss_dssp TTCS-SCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGG-T---CC---
T ss_pred cccC-CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCceEEEEEccCC-C---CC---
Confidence 3333 3356666666677876542 2568889999999999999987 8887653 3578888887421 0 01
Q ss_pred HHHHHHHHHHhCCEEEeeccCcccccC-CCCCceEEEecC----CCCHHHHHHHHHHHHHHHHHH
Q 013461 378 LEDIADWALKEDGVFVVTSKRSMLDKC-RLPVGIRLFVSA----AHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 378 ~~~i~~~~L~~~GV~v~~~~~~~~~~~-~~~~~iRi~~~~----~~t~eei~~~i~~l~~~~~~~ 437 (442)
..++.+. |.++||.+.++..+..... ..+..+|++++. .+|++|+++++++|+++++++
T Consensus 324 ~~~~~~~-l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 324 GKTAEKV-LDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp HHHHHHH-HHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHH-HHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence 2346654 5566999998753210000 013459999996 678999999999999987654
No 108
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.88 E-value=2.1e-21 Score=194.01 Aligned_cols=312 Identities=14% Similarity=0.121 Sum_probs=208.1
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHH--h-cCCCCC-ccCccccCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHHH
Q 013461 110 EVVNFASANYLGLIGHEKLLESCTSALE--K-YGVGSC-GPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF 183 (442)
Q Consensus 110 ~~id~~s~~~l~~~~~p~v~ea~~~~l~--~-~g~~~~-~~~~~~g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~ 183 (442)
-|+|+++.. ..+|++++++.+++. + |+.... .+...++..+...++++.+++++|.+ +++++++|++|+.
T Consensus 24 iyld~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~ 99 (423)
T 3lvm_A 24 IYLDYSATT----PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDN 99 (423)
T ss_dssp EECBTTTCC----CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHH
T ss_pred EeecCCCcC----CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHH
Confidence 355554432 247999999999887 3 554333 33334556778899999999999976 7888899999999
Q ss_pred hhhhhhcc----CCCEEEeCCCchHHHHHHH---HhcCCeEEEecCC-----CHHHHHHHHHhhcccccc----------
Q 013461 184 SAIPCFCK----KGDLIVADEGVHWGIQNGL---YLSRSTVVYFKHN-----DMDSLRNTLERVTADNKR---------- 241 (442)
Q Consensus 184 ~ai~a~~~----~gd~Vi~~~~~h~s~~~~~---~l~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~~---------- 241 (442)
.++.++.+ +||.|+++.+.|.++..++ ...|.+++.++.+ |+++|++.+++.+.-...
T Consensus 100 ~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~ 179 (423)
T 3lvm_A 100 LAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVV 179 (423)
T ss_dssp HHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBB
T ss_pred HHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCccc
Confidence 99988874 8999999999999987776 4459999998865 788888877643211100
Q ss_pred -----------ccccccccc--CCCccccccCCCCCceeEEEEeccccccCCC-cEEEcCHHhHHHHHhhCCc-----ee
Q 013461 242 -----------SNSFGVLGR--SGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLSSSG-----YV 302 (442)
Q Consensus 242 -----------a~~~g~~G~--~g~g~~~~~~v~~~~~diii~S~sK~lg~~G-G~v~g~~~~i~~l~~~~~~-----~~ 302 (442)
.|++-++-+ .+.|.. .+++...+.|+++.|++|.+|..| |+++++++.++.+.....+ ..
T Consensus 180 ~~l~~i~~l~~~~~~~li~Dea~~~~~~-~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (423)
T 3lvm_A 180 QDIAAIGEMCRARGIIYHVDATQSVGKL-PIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGM 258 (423)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTTTTTS-CCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTTT
T ss_pred cCHHHHHHHHHHcCCEEEEEhhhhcCCC-CcChhhcCCCEEEechHHhcCCCCeEEEEEeccccCCCCccccCCcccccc
Confidence 222222211 111111 122222357899999999888765 8999887766554332111 01
Q ss_pred ccCCCcHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHhhccCCCceeecCCC---CCEEEEEecCCCCCchhhHHHH
Q 013461 303 FSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPE---SPIVFLILEKSTGSMKNDLQLL 378 (442)
Q Consensus 303 ~s~s~~p~~aaaa~aal~~l~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~ 378 (442)
..++.++..++++.++++.+++ .++++++++++++++.+.|++++++++..++. ..++.+.+... + .
T Consensus 259 ~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~ 329 (423)
T 3lvm_A 259 RSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV------E---G 329 (423)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETTS------C---H
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCCC------C---H
Confidence 1234566666666677776654 35688899999999999999888888775432 35777776321 1 2
Q ss_pred HHHHHHHHHhCCEEEeeccCccccc---------CCC-----CCceEEEecCCCCHHHHHHHHHHHHHHHHHHh
Q 013461 379 EDIADWALKEDGVFVVTSKRSMLDK---------CRL-----PVGIRLFVSAAHSEADLVKACESLKRISAVVL 438 (442)
Q Consensus 379 ~~i~~~~L~~~GV~v~~~~~~~~~~---------~~~-----~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~ 438 (442)
.++.+. |.+ |.+.++..+.... ... +..+||+++..+|++|+++++++|+++++++.
T Consensus 330 ~~l~~~-l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~ 400 (423)
T 3lvm_A 330 ESLIMA-LKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLR 400 (423)
T ss_dssp HHHHHH-TTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-Hhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 245553 544 8777764322100 000 14599999999999999999999999988764
No 109
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.88 E-value=2.1e-22 Score=197.53 Aligned_cols=296 Identities=14% Similarity=0.093 Sum_probs=197.2
Q ss_pred CChHHHHHHHHHHHhcCC-CCC-ccCccccCcHHHHHHHHH-HHhhhCCCcEEEEcchHHHHHhhhhhhccCCCEEEeCC
Q 013461 124 GHEKLLESCTSALEKYGV-GSC-GPRGFYGTIDVHLDCEAR-IAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADE 200 (442)
Q Consensus 124 ~~p~v~ea~~~~l~~~g~-~~~-~~~~~~g~~~~~~~le~~-lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~ 200 (442)
.+|++++++.+++..... ..+ .++..++..+...++++. +|+++|.++++++++|++|+..++.+++++||.|+++.
T Consensus 21 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~ 100 (371)
T 2e7j_A 21 LTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDE 100 (371)
T ss_dssp CCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCTTCEEEEET
T ss_pred CCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 478999999998876421 111 223345566778999999 99999988555555568999999999999999999999
Q ss_pred CchHHHHHHHHhcCCeEEEec--CC-----CHHHHHHHHHhhc--ccccc------------------------cccccc
Q 013461 201 GVHWGIQNGLYLSRSTVVYFK--HN-----DMDSLRNTLERVT--ADNKR------------------------SNSFGV 247 (442)
Q Consensus 201 ~~h~s~~~~~~l~g~~v~~~~--~~-----d~~~Le~~l~~~~--~~~~~------------------------a~~~g~ 247 (442)
++|.++..+++..|.+++.++ .+ |+++|++.+++.. +..+. .|+.-+
T Consensus 101 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~l 180 (371)
T 2e7j_A 101 NCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPL 180 (371)
T ss_dssp TCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCE
T ss_pred CcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeE
Confidence 999999999999999999998 65 7899999887431 11111 222211
Q ss_pred cccC--CCccccccCCCCCceeEEEEeccccccC--CCcEEEcCHHhHHH-HHhhCCceec-----cCCCcHHHHHHHHH
Q 013461 248 LGRS--GRGLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDH-QRLSSSGYVF-----SASLPPYLASAAIT 317 (442)
Q Consensus 248 ~G~~--g~g~~~~~~v~~~~~diii~S~sK~lg~--~GG~v~g~~~~i~~-l~~~~~~~~~-----s~s~~p~~aaaa~a 317 (442)
+-+. +.|... ..+...+.|++++|+||+++. .+||+++++++++. ++....++.. +++.++..++++.+
T Consensus 181 i~D~a~~~~~~~-~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 259 (371)
T 2e7j_A 181 LVNGAYAIGRMP-VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMA 259 (371)
T ss_dssp EEECTTTBTTBC-CCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHH
T ss_pred EEECccccCCCC-CChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHH
Confidence 1111 111110 111111368999999999864 34999999988776 6543322222 34556666777777
Q ss_pred HHHHHhcChHHHHHH--HHHHHHHHHhhccCCCceeecCC--CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEE
Q 013461 318 AIDVLEENPDLITKL--KKNTAILRTGLSDIHGLSIASNP--ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 393 (442)
Q Consensus 318 al~~l~~~~~~~~~l--~~~~~~l~~~L~~~~g~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v 393 (442)
+++.+++ .+.+++ +++++++.+.|+++ |+++..+. .++++++.++ ...++.+. |.++||.+
T Consensus 260 ~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-l~~~gi~~ 324 (371)
T 2e7j_A 260 SFPHVRE--RIKRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAE-----------VLYEISKK-AKGGRFFL 324 (371)
T ss_dssp HHHHHHH--HGGGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECH-----------HHHHHHHH-SSSGGGHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCccCceEEEECC-----------CHHHHHHH-HHHCCEEE
Confidence 8887765 567778 88999999999887 88876543 4778888762 13456765 44669998
Q ss_pred eeccCcccc-cCCCCCceE-EEecCC-CCHHHHHHHHHHHHHHHHH
Q 013461 394 VTSKRSMLD-KCRLPVGIR-LFVSAA-HSEADLVKACESLKRISAV 436 (442)
Q Consensus 394 ~~~~~~~~~-~~~~~~~iR-i~~~~~-~t~eei~~~i~~l~~~~~~ 436 (442)
.+ ..+... .+..+..+| ++++.. +|++|+++++++|++++++
T Consensus 325 ~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 325 YR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp HH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred Ee-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 77 322110 011135599 999988 8999999999999988764
No 110
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.88 E-value=6e-21 Score=187.76 Aligned_cols=314 Identities=14% Similarity=0.072 Sum_probs=202.7
Q ss_pred EEEeecCCCCCCCCChHHHHHHHHHHHhc-CCCCCccCccccCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHHHhhhh
Q 013461 111 VVNFASANYLGLIGHEKLLESCTSALEKY-GVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIP 187 (442)
Q Consensus 111 ~id~~s~~~l~~~~~p~v~ea~~~~l~~~-g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~~ai~ 187 (442)
|+|++++. ..+|.|++++.+++.+. +...+.+....+..+...++++.+|+++|.+ +++++++|++|+..++.
T Consensus 3 yld~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~ 78 (382)
T 4eb5_A 3 YFDYTSAK----PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAII 78 (382)
T ss_dssp BCBTTTCC----CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHH
T ss_pred eeccCCCC----CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHH
Confidence 45655442 25799999999999863 3222112212234578899999999999975 66777888999999999
Q ss_pred hhc----cCCCEEEeCCCchHHHHHHHHh---cCCeEEEecC-----CCHHHHHHHHHhhcccccc--------------
Q 013461 188 CFC----KKGDLIVADEGVHWGIQNGLYL---SRSTVVYFKH-----NDMDSLRNTLERVTADNKR-------------- 241 (442)
Q Consensus 188 a~~----~~gd~Vi~~~~~h~s~~~~~~l---~g~~v~~~~~-----~d~~~Le~~l~~~~~~~~~-------------- 241 (442)
++. ++||.|+++.+.|.++...+.. .|++++.++. .|+++|++.+++.+.-...
T Consensus 79 ~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~ 158 (382)
T 4eb5_A 79 GYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVE 158 (382)
T ss_dssp HHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHH
T ss_pred HHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHH
Confidence 987 8999999999999988777653 6889988876 3678888777542211100
Q ss_pred -------cccccccccCCCccc-cccCCCCCceeEEEEeccccccCCC-cEEEcCHHh-HHHHHhhC-C-ceeccCCCcH
Q 013461 242 -------SNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARV-VDHQRLSS-S-GYVFSASLPP 309 (442)
Q Consensus 242 -------a~~~g~~G~~g~g~~-~~~~v~~~~~diii~S~sK~lg~~G-G~v~g~~~~-i~~l~~~~-~-~~~~s~s~~p 309 (442)
.|++- +-+.-.+.. ...++...+.|++++|++|.+|..| |+++++++. +....... . .....++.++
T Consensus 159 ~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (382)
T 4eb5_A 159 EISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEAKLQPVILGGGQENGLRSGSENV 237 (382)
T ss_dssp HHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSSCEEEEEETTCCCCCSSCSSCTGGGTSCSCCCH
T ss_pred HHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCceEEEEEccccccCceecCCCccccccCCCccH
Confidence 22222 111111110 0011111146899999999988765 888877663 11110000 0 0011233455
Q ss_pred HHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHhhccCCCceeecCC---CCCEEEEEecCCCCCchhhHHHHHHHHHHH
Q 013461 310 YLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNP---ESPIVFLILEKSTGSMKNDLQLLEDIADWA 385 (442)
Q Consensus 310 ~~aaaa~aal~~l~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~ 385 (442)
..++++.++++.+++ .++++++++++++++.+.|++++++++..+. .+.++++.++.. + ..++.+.+
T Consensus 238 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~l 308 (382)
T 4eb5_A 238 PSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI------E---GESIVLSL 308 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTS------C---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCc------C---HHHHHHHH
Confidence 555666677776543 3567888999999999999988788776432 155777777421 1 23566654
Q ss_pred HHhCCEEEeeccCccccc---------CC-----CCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhh
Q 013461 386 LKEDGVFVVTSKRSMLDK---------CR-----LPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 386 L~~~GV~v~~~~~~~~~~---------~~-----~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
.++||.+.++..+.... .. .+..+|++++..+|++|+++++++|+++++++.+
T Consensus 309 -~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 309 -DMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp -HHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45699998875422110 00 0245999999889999999999999999877643
No 111
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.87 E-value=3.2e-21 Score=192.28 Aligned_cols=301 Identities=15% Similarity=0.146 Sum_probs=194.5
Q ss_pred CeeEEEeecCCCCCCC----CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC---cEEEEcchHH
Q 013461 108 GKEVVNFASANYLGLI----GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP---DSILYSYGLS 180 (442)
Q Consensus 108 G~~~id~~s~~~l~~~----~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e---~~i~~~sG~~ 180 (442)
|+++|||++++|++.. .+|.+.+++.+.... + ..++....|..++++++++.+.+..+.+ +++++++|++
T Consensus 36 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~--~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~ 112 (413)
T 3t18_A 36 REAVINAALGTLLDDKGKIIALPSVYDRLDEMDRS-H--IASYAPIEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTG 112 (413)
T ss_dssp GGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHH-H--HHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHH
T ss_pred ccceEeccccCccCCCCCcCChHHHHHHHHhcCcc-c--ccCcCCCCCCHHHHHHHHHHHhcccCccccCcEEEcCccHH
Confidence 5689999999986554 345676666543221 0 1111123355566666666665555666 7888889999
Q ss_pred HHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC------CCHHHHHHHHHhh----cc---------cccc
Q 013461 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH------NDMDSLRNTLERV----TA---------DNKR 241 (442)
Q Consensus 181 a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~------~d~~~Le~~l~~~----~~---------~~~~ 241 (442)
++..++.+++++||.|+++.++|..+...++..|++++.++. .|+++|++.+++. +. .++.
T Consensus 113 al~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPt 192 (413)
T 3t18_A 113 AIRSAIFSYLDEGDPLICHDYYWAPYRKICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLINSPGNNPT 192 (413)
T ss_dssp HHHHHHHHHCCSSCEEEEESSCCTHHHHHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTT
T ss_pred HHHHHHHHhcCCCCEEEECCCCcccHHHHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCCCCCCC
Confidence 999999999999999999999999999999999999998874 2788999888752 11 0100
Q ss_pred ---------------cc------ccccc----------ccCC---Cccccc-cCCCCCceeEEEEeccccccCCC---cE
Q 013461 242 ---------------SN------SFGVL----------GRSG---RGLTEH-CGVPVDKIDIVTAAMGHALATEG---GF 283 (442)
Q Consensus 242 ---------------a~------~~g~~----------G~~g---~g~~~~-~~v~~~~~diii~S~sK~lg~~G---G~ 283 (442)
+. ..+++ +.+| ..+... .+++++.++|+++||||++|+.| ||
T Consensus 193 G~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~riG~ 272 (413)
T 3t18_A 193 GYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAFSMSKSHTAYGLRSGA 272 (413)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEEEHHHHTTCGGGCCEE
T ss_pred CCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEEEecCccCCCcCcCcEE
Confidence 11 22221 1111 111111 22322223588999999999777 99
Q ss_pred EEc---CHHhHHHHHhhCCceecc--CCCcHHHHHHHHHHHHHH------hcChHHHHHHHHHHHHHHHhhccCCCceee
Q 013461 284 CTG---SARVVDHQRLSSSGYVFS--ASLPPYLASAAITAIDVL------EENPDLITKLKKNTAILRTGLSDIHGLSIA 352 (442)
Q Consensus 284 v~g---~~~~i~~l~~~~~~~~~s--~s~~p~~aaaa~aal~~l------~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~ 352 (442)
+++ ++++++.+.........+ ...+++.++++.++++.. +....++++++++.+++.+.|+++ |+++.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 351 (413)
T 3t18_A 273 AVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTAAKEN-KLTMI 351 (413)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCB
T ss_pred EEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcc
Confidence 998 999998876542211111 234566666655555422 222356788899999999999887 88776
Q ss_pred cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHH
Q 013461 353 SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR 432 (442)
Q Consensus 353 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~ 432 (442)
.+..+.++++.+. + ..++++. |.++||.+.++. ..+||+++.. +++++ +++|++
T Consensus 352 ~~~~~~~~~~~~~--------~---~~~~~~~-l~~~gv~v~~g~----------~~iRis~~~~-~~~~~---l~~l~~ 405 (413)
T 3t18_A 352 PYFGGFFTFIPTD--------K---AFDIVKD-LEKENIFTIPSA----------KGIRVAICGV-GEEKI---PKLVQR 405 (413)
T ss_dssp CCCSSSCEEEECS--------C---HHHHHHH-HHHTTEECEECS----------SEEEECTTTS-CGGGH---HHHHHH
T ss_pred CCCceEEEEeCCC--------C---HHHHHHH-HHhCCEEEecCC----------CceEEEEeeC-CHHHH---HHHHHH
Confidence 5444445555441 1 2356664 566799999862 3499999854 55555 777777
Q ss_pred HHHHHh
Q 013461 433 ISAVVL 438 (442)
Q Consensus 433 ~~~~~~ 438 (442)
+++++.
T Consensus 406 ~l~~~~ 411 (413)
T 3t18_A 406 LAFYTN 411 (413)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776654
No 112
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.87 E-value=6.3e-21 Score=188.24 Aligned_cols=285 Identities=14% Similarity=0.087 Sum_probs=194.5
Q ss_pred CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHHHhhhhhhccC---------
Q 013461 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCFCKK--------- 192 (442)
Q Consensus 124 ~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~~ai~a~~~~--------- 192 (442)
.+|++.+++.+++.+..... ....+..+...++++.+++++|.+ +++++++|++|+..++.++.++
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~ 118 (397)
T 3f9t_A 42 VLPITRKIVDIFLETNLGDP---GLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGL 118 (397)
T ss_dssp CCTHHHHHHHHHTTCCTTSG---GGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHhhcCCCc---ccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcc
Confidence 46899999999887632211 122366788899999999999965 4588899999999999988765
Q ss_pred ----CCEEEeCCCchHHHHHHHHhcCCeEEEecCC-----CHHHHHHHHHh-hcccccc---------------------
Q 013461 193 ----GDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLER-VTADNKR--------------------- 241 (442)
Q Consensus 193 ----gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-----d~~~Le~~l~~-~~~~~~~--------------------- 241 (442)
||.|+++.++|.++..+++..|.+++.++.+ |+++|++.+++ .+.....
T Consensus 119 ~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 198 (397)
T 3f9t_A 119 SKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAK 198 (397)
T ss_dssp CCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred cCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999876 88999999877 3321110
Q ss_pred ----------cccccccccCCCcc-----ccccCCCCCceeEEEEeccccccCC--CcEE-EcCHHhHHHHHhhCCceec
Q 013461 242 ----------SNSFGVLGRSGRGL-----TEHCGVPVDKIDIVTAAMGHALATE--GGFC-TGSARVVDHQRLSSSGYVF 303 (442)
Q Consensus 242 ----------a~~~g~~G~~g~g~-----~~~~~v~~~~~diii~S~sK~lg~~--GG~v-~g~~~~i~~l~~~~~~~~~ 303 (442)
+|+.+.++..+.+. ...+++.. ++|+++.|++|.++.+ .|++ +.++.+.+.++.. ..+..
T Consensus 199 ~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~ 276 (397)
T 3f9t_A 199 ENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYKRYLDVD-APYLT 276 (397)
T ss_dssp HHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGGGGTCEE-CTTSS
T ss_pred HhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCHHHHHhhccC-Ccccc
Confidence 33322222222110 01222222 6789999999998532 3555 4455565544322 12211
Q ss_pred c-------CCC---cHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchh
Q 013461 304 S-------ASL---PPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKN 373 (442)
Q Consensus 304 s-------~s~---~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 373 (442)
. ++. +++.+.++++.+.. ....+..++++++++++.+.|+++ |+++..++.++++++.+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~------- 347 (397)
T 3f9t_A 277 ETRQATILGTRVGFGGACTYAVLRYLGR-EGQRKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIVAIEDED------- 347 (397)
T ss_dssp SSEECSSCSSCCSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEEEEECTT-------
T ss_pred CCCccccccccccchHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCCCccEEEEEeCC-------
Confidence 1 111 33334444343322 123467888899999999999988 8886666778888877631
Q ss_pred hHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHH
Q 013461 374 DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 435 (442)
Q Consensus 374 ~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~ 435 (442)
..++.+.+ .++||.+.++.. +..+|++++..+|++|+++++++|+++++
T Consensus 348 ----~~~~~~~l-~~~gi~v~~~~~--------~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 348 ----YKEVCKKL-RDRGIYVSVCNC--------VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp ----HHHHHHHH-HHTTCBCEECSS--------SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred ----HHHHHHHH-HhCCeEEeccCC--------CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 23567654 455999988654 24599999998999999999999998754
No 113
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.87 E-value=5.5e-21 Score=186.65 Aligned_cols=300 Identities=12% Similarity=0.096 Sum_probs=199.3
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC----cEEEEcchHHHHHhh
Q 013461 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP----DSILYSYGLSTMFSA 185 (442)
Q Consensus 110 ~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e----~~i~~~sG~~a~~~a 185 (442)
+++||+.+. . ..+|+|++++.++ ++ ...+ ....+...++++++|+++|.+ +++++++|++|+..+
T Consensus 4 ~~~~~~~gp-~--~~~~~v~~a~~~~---~~--~~~~---~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~ 72 (366)
T 1m32_A 4 NYLLLTPGP-L--TTSRTVKEAMLFD---SC--TWDD---DYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAV 72 (366)
T ss_dssp -CEECSSSS-C--CCCHHHHHTTCCC---CC--TTSH---HHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHH
T ss_pred ccccccCCC-c--CCCHHHHHHHhhh---hc--CCCH---HHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHH
Confidence 367776552 2 2579999988764 22 1110 001256789999999999943 478888999999999
Q ss_pred hhhhccCCCEEE-eCCCchHH-HHHHHHhcCCeEEEecC-----CCHHHHHHHHHhhcc-cccc----------------
Q 013461 186 IPCFCKKGDLIV-ADEGVHWG-IQNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTA-DNKR---------------- 241 (442)
Q Consensus 186 i~a~~~~gd~Vi-~~~~~h~s-~~~~~~l~g~~v~~~~~-----~d~~~Le~~l~~~~~-~~~~---------------- 241 (442)
+.++.++||.|+ .+.++|++ +...+...|.+++.++. .|+++|++.+++... ....
T Consensus 73 ~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~ 152 (366)
T 1m32_A 73 LGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDE 152 (366)
T ss_dssp HHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHH
T ss_pred HHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHH
Confidence 999999999755 55688876 44566777888887763 578999998876311 1100
Q ss_pred ------ccccccccc--CCCccccccCCCCCceeEEEEeccccc-cCCC-cEEEcCHHhHHHHHhhCCceec--------
Q 013461 242 ------SNSFGVLGR--SGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG-GFCTGSARVVDHQRLSSSGYVF-------- 303 (442)
Q Consensus 242 ------a~~~g~~G~--~g~g~~~~~~v~~~~~diii~S~sK~l-g~~G-G~v~g~~~~i~~l~~~~~~~~~-------- 303 (442)
.|+.-++-+ .+.|.. .+++...+.|++++|++|++ |..| ||+++++++++.++....++.+
T Consensus 153 i~~l~~~~~~~li~Dea~~~~~~-~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (366)
T 1m32_A 153 VGALAHRYGKTYIVDAMSSFGGI-PMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRC 231 (366)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTS-CCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHH
T ss_pred HHHHHHHcCCEEEEECCccccCc-CccccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccHHHHHhh
Confidence 122111111 111111 12332234799999999988 5556 9999999988766543222211
Q ss_pred --------cCCCcHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHhhccCCCceeecC--CCCC-EEEEEecCCCC
Q 013461 304 --------SASLPPYLASAAITAIDVLEE---NPDLITKLKKNTAILRTGLSDIHGLSIASN--PESP-IVFLILEKSTG 369 (442)
Q Consensus 304 --------s~s~~p~~aaaa~aal~~l~~---~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~--~~~~-i~~~~~~~~~~ 369 (442)
..+.++..++++.++++.+.+ .++++++++++++++.+.|+++ |+++..+ +.++ ++++.++...+
T Consensus 232 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (366)
T 1m32_A 232 MEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPEDPQ 310 (366)
T ss_dssp HHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCCTT
T ss_pred hcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccCchhcCceEEEEEcCccCC
Confidence 134567777777788887654 2568889999999999999987 8776543 1344 77887742001
Q ss_pred CchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHH
Q 013461 370 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 435 (442)
Q Consensus 370 ~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~ 435 (442)
.+ ..++.+.++ ++||.+.++..+. +..+|++++..+|++|+++++++|+++++
T Consensus 311 ---~~---~~~~~~~l~-~~gi~v~~~~~~~------~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 311 ---YR---FSEFYRRLK-EQGFVIYPGKVSQ------SDCFRIGNIGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp ---CC---HHHHHHHHH-HTTEECEECCCSS------SCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred ---CC---HHHHHHHHH-HCCEEEECCcCCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 01 235777644 5599998865431 35699999998999999999999998754
No 114
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.87 E-value=4.3e-20 Score=184.98 Aligned_cols=275 Identities=15% Similarity=0.149 Sum_probs=187.1
Q ss_pred ccCcHHHHHHHHHHHhhhCCC-----------cEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEE
Q 013461 150 YGTIDVHLDCEARIAKFLGTP-----------DSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVV 218 (442)
Q Consensus 150 ~g~~~~~~~le~~lA~~~g~e-----------~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~ 218 (442)
.|..++++.+++.++++.|.+ ++++++++++++..++.+++++||.|+++.++|..+...++..|++++
T Consensus 78 ~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~ 157 (425)
T 2r2n_A 78 AGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNII 157 (425)
T ss_dssp TCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEE
Confidence 456677777777777777742 455666667999999999999999999999999999999999999998
Q ss_pred EecC----CCHHHHHHHHHhhc---------ccccc----------------------------ccccccccc-------
Q 013461 219 YFKH----NDMDSLRNTLERVT---------ADNKR----------------------------SNSFGVLGR------- 250 (442)
Q Consensus 219 ~~~~----~d~~~Le~~l~~~~---------~~~~~----------------------------a~~~g~~G~------- 250 (442)
.++. .|+++|++.+++.. +..+. .|++-++-+
T Consensus 158 ~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~ 237 (425)
T 2r2n_A 158 NVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQ 237 (425)
T ss_dssp EECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGB
T ss_pred EeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCccccc
Confidence 8875 37889999887321 11110 122111111
Q ss_pred -CCCccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHH----
Q 013461 251 -SGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL---- 322 (442)
Q Consensus 251 -~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l---- 322 (442)
.|........++.++.+++++||||++| +| ||+++++++++.++...... +.+.+++.++++.++++..
T Consensus 238 ~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~ 314 (425)
T 2r2n_A 238 FNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQVS--TLHPSTFNQLMISQLLHEWGEEG 314 (425)
T ss_dssp SSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHHTT--TCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcccch
Confidence 1111111122233457899999999998 66 99999999998886543222 2344677777777777653
Q ss_pred --hcChHHHHHHHHHHHHHHHhhcc-CCCc-eeecCCCCCEEEEEecCCCCCchhhHHHHHH-HHHHHHHhCCEEEeecc
Q 013461 323 --EENPDLITKLKKNTAILRTGLSD-IHGL-SIASNPESPIVFLILEKSTGSMKNDLQLLED-IADWALKEDGVFVVTSK 397 (442)
Q Consensus 323 --~~~~~~~~~l~~~~~~l~~~L~~-~~g~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-i~~~~L~~~GV~v~~~~ 397 (442)
+....++++++++++++.+.|.+ ++++ .+..+..+.++++.++.... ..+ +.+ .|.++||.+.++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~--------~~~~~~~-~l~~~gv~v~pg~ 385 (425)
T 2r2n_A 315 FMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIND--------VKELIEE-KAVKMGVLMLPGN 385 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSC--------CHHHHHT-HHHHTTEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCC--------HHHHHHH-HHHHCCcEEechh
Confidence 12345677888899999999987 4676 44445567788888853211 113 344 4556799999987
Q ss_pred CcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 398 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 398 ~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
.+..+.......+||+++. .+++++++++++|++++++.
T Consensus 386 ~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 386 AFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp GGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHh
Confidence 6543211112469999984 59999999999999988654
No 115
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.87 E-value=1.1e-20 Score=188.81 Aligned_cols=303 Identities=13% Similarity=0.133 Sum_probs=196.8
Q ss_pred CeeEEEeecCCCCCC----CCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC---cEEEEcchHH
Q 013461 108 GKEVVNFASANYLGL----IGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP---DSILYSYGLS 180 (442)
Q Consensus 108 G~~~id~~s~~~l~~----~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e---~~i~~~sG~~ 180 (442)
|+++|||+.++|++. ..++.+.+++.+.......++ ....|..++++.+++.+.+..+.+ +++++++|++
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y---~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~ 113 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGY---APIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTG 113 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSC---CCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCC---CCCCChHHHHHHHHHHHhcccCccccccEEECCchHH
Confidence 568999998877443 345677776655433210111 112344444455555444444666 7888889999
Q ss_pred HHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC------CCHHHHHHHHHhh----cc---------cccc
Q 013461 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH------NDMDSLRNTLERV----TA---------DNKR 241 (442)
Q Consensus 181 a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~------~d~~~Le~~l~~~----~~---------~~~~ 241 (442)
++..++.+++++||.|+++.++|..+...++..|.+++.++. .|+++|++.+++. +. .++.
T Consensus 114 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPt 193 (418)
T 3rq1_A 114 GIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPT 193 (418)
T ss_dssp HHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTT
T ss_pred HHHHHHHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCC
Confidence 999999999999999999999999999999999999998874 2788998888752 11 0000
Q ss_pred ---------------cc------cccc--c-cc-------CCC---cccc-ccCCCCCceeEEEEeccccccCCC---cE
Q 013461 242 ---------------SN------SFGV--L-GR-------SGR---GLTE-HCGVPVDKIDIVTAAMGHALATEG---GF 283 (442)
Q Consensus 242 ---------------a~------~~g~--~-G~-------~g~---g~~~-~~~v~~~~~diii~S~sK~lg~~G---G~ 283 (442)
+. ..++ + .+ ++. .+.. ..++.++.+.|+++||||++|+.| ||
T Consensus 194 G~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~ 273 (418)
T 3rq1_A 194 GYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGA 273 (418)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEE
T ss_pred CCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceE
Confidence 11 2221 1 11 010 0111 112222212488999999998766 99
Q ss_pred EEc---CHHhHHHHHhhCCceec-c-CCCcHHHHHHHHHHHHHH-------hcChHHHHHHHHHHHHHHHhhccCCCcee
Q 013461 284 CTG---SARVVDHQRLSSSGYVF-S-ASLPPYLASAAITAIDVL-------EENPDLITKLKKNTAILRTGLSDIHGLSI 351 (442)
Q Consensus 284 v~g---~~~~i~~l~~~~~~~~~-s-~s~~p~~aaaa~aal~~l-------~~~~~~~~~l~~~~~~l~~~L~~~~g~~~ 351 (442)
+++ ++++++.++........ . ...+++.++++.++++.. ++...++++++++++++.+.|+++ |+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 352 (418)
T 3rq1_A 274 MIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLPM 352 (418)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC
Confidence 998 99999887654211111 1 234566666665665322 122346678889999999999887 8877
Q ss_pred ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHH
Q 013461 352 ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLK 431 (442)
Q Consensus 352 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~ 431 (442)
..+..+.++++.+. + ..++++. |+++||++.++. ..+||+++ .+|++++++++++|+
T Consensus 353 ~~~~~~~~~~~~~~--------~---~~~~~~~-l~~~gi~v~~g~----------~~iRis~~-~~~~~~i~~~~~~l~ 409 (418)
T 3rq1_A 353 LPYRGGFFITIPTD--------S---ANAICEE-LKKEHIYVIALA----------NGIRIAAC-GIPKCQMTGLAEKIY 409 (418)
T ss_dssp CCCCSSSEEEEECT--------T---HHHHHHH-HHHTTEECEECS----------SEEEEEGG-GSCHHHHTTHHHHHH
T ss_pred CCCCceEEEEcCCC--------C---HHHHHHH-HHhCCEEEecCC----------CCeEEEEe-cCCHHHHHHHHHHHH
Confidence 65444445555441 1 2356664 667799998862 34999987 469999999999999
Q ss_pred HHHHHH
Q 013461 432 RISAVV 437 (442)
Q Consensus 432 ~~~~~~ 437 (442)
++++++
T Consensus 410 ~~l~~~ 415 (418)
T 3rq1_A 410 NAMKSL 415 (418)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 998765
No 116
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.87 E-value=3.2e-21 Score=187.87 Aligned_cols=295 Identities=14% Similarity=0.125 Sum_probs=197.0
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCc-EEEEcchHHHHHhhhh
Q 013461 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD-SILYSYGLSTMFSAIP 187 (442)
Q Consensus 109 ~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~-~i~~~sG~~a~~~ai~ 187 (442)
..+|||+++++. ..+|++++++.+++.. +...|+..+...++++.+++++|.+. ++++++|++++..++.
T Consensus 7 ~~~id~~~~~~~--~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~ 77 (356)
T 1v72_A 7 PPALGFSSDNIA--GASPEVAQALVKHSSG-------QAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLS 77 (356)
T ss_dssp CCCCBCSCGGGC--CCCHHHHHHHHHTTSS-------CCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHH
T ss_pred CceEeeccCCcc--CCCHHHHHHHHhhccC-------cccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHH
Confidence 468999887543 3579999999887532 12345667888999999999999655 5788999999999999
Q ss_pred hhccCCCEEEeCCCchHHHHHH--HHhc--CCeEEEecCC----CHHHHHH-HHHhhc----ccccc-------------
Q 013461 188 CFCKKGDLIVADEGVHWGIQNG--LYLS--RSTVVYFKHN----DMDSLRN-TLERVT----ADNKR------------- 241 (442)
Q Consensus 188 a~~~~gd~Vi~~~~~h~s~~~~--~~l~--g~~v~~~~~~----d~~~Le~-~l~~~~----~~~~~------------- 241 (442)
++.++||.|+++.++|.+.... +... |.+++.++.+ |+++|++ .+++.. .+.+.
T Consensus 78 ~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~tG~~~ 157 (356)
T 1v72_A 78 AMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIY 157 (356)
T ss_dssp TSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCC
T ss_pred HhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCCCCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCCCCccC
Confidence 9999999999999999987765 6666 8999888764 7888888 775410 01111
Q ss_pred -------------cccccccccCCCc--cccccCCCC------CceeEEEEeccccccCC-C-cEEEcCHHhHHHHHhhC
Q 013461 242 -------------SNSFGVLGRSGRG--LTEHCGVPV------DKIDIVTAAMGHALATE-G-GFCTGSARVVDHQRLSS 298 (442)
Q Consensus 242 -------------a~~~g~~G~~g~g--~~~~~~v~~------~~~diii~S~sK~lg~~-G-G~v~g~~~~i~~l~~~~ 298 (442)
.|++-++-+...+ ...+.+..+ .+.|+++.|+||+ |.+ | |++++++++++.++...
T Consensus 158 ~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~~~~~~~~~~~~~ 236 (356)
T 1v72_A 158 TLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIVLFNTSLATEMSYRR 236 (356)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEEESSGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEEEECHHHHhhHHHHh
Confidence 1221111111111 000111111 2468888999999 544 4 59999999988765321
Q ss_pred CceeccCCCcHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHH
Q 013461 299 SGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQ 376 (442)
Q Consensus 299 ~~~~~s~s~~p~~aaaa~aal~~l~~~--~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 376 (442)
.. ..+...++ ..++.++++.+++. .+..++++++++++.+.|++++|+++..++.++++++.++ +
T Consensus 237 ~~-~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~--------~-- 303 (356)
T 1v72_A 237 KR-AGHLSSKM--RFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD--------S-- 303 (356)
T ss_dssp HH-TTCCCSST--HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC--------H--
T ss_pred hc-cCchhhhH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC--------H--
Confidence 10 00111111 11223345555432 2456778889999999998877888765667788887762 1
Q ss_pred HHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 377 LLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 377 ~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
++++.+ .++||.+.++.+. +..+|++++..+|++|+++++++|++++++.
T Consensus 304 ---~~~~~l-~~~gi~v~~g~~~-------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 304 ---AMIDAL-LKAGFGFYHDRWG-------PNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp ---HHHHHH-HHTTCBCBCSSSS-------TTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred ---HHHHHH-HhcCeEEeccccC-------CCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 466654 4569999875421 2459999999999999999999999887654
No 117
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.87 E-value=2.7e-20 Score=184.04 Aligned_cols=299 Identities=14% Similarity=0.103 Sum_probs=202.2
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC---cEEEEcchHHHHHhh
Q 013461 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP---DSILYSYGLSTMFSA 185 (442)
Q Consensus 109 ~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e---~~i~~~sG~~a~~~a 185 (442)
+.++|..+.. ..+|++++++.+++.+ .++ ....+...++++.+++++|.+ +++++++|++|+..+
T Consensus 34 ~~~l~~~~~~----~~~~~v~~a~~~~~~~---~~~-----~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~ 101 (393)
T 1vjo_A 34 SRLLLGPGPS----NAHPSVLQAMNVSPVG---HLD-----PAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEAT 101 (393)
T ss_dssp CCEECSSSCC----CCCHHHHHHHSSCCCC---TTS-----HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHH
T ss_pred cceeccCCCC----CCCHHHHHHHhccccc---ccC-----HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHH
Confidence 4566543321 2468888887766542 110 113578899999999999965 467778889999999
Q ss_pred hhhhccCCCEEEeCCCchHH--HHHHHHhcCCeEEEecC-----CCHHHHHHHHHhh-cccccc----------------
Q 013461 186 IPCFCKKGDLIVADEGVHWG--IQNGLYLSRSTVVYFKH-----NDMDSLRNTLERV-TADNKR---------------- 241 (442)
Q Consensus 186 i~a~~~~gd~Vi~~~~~h~s--~~~~~~l~g~~v~~~~~-----~d~~~Le~~l~~~-~~~~~~---------------- 241 (442)
+.+++++||.|+++.+.|.+ +...++..|.+++.++. .|+++|++.+++. +.-...
T Consensus 102 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i 181 (393)
T 1vjo_A 102 IANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGV 181 (393)
T ss_dssp HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTH
T ss_pred HHhccCCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHH
Confidence 99999999999999999988 88888889999988873 5789999988762 211100
Q ss_pred -----cccccccccC--CCccccccCCCCCceeEEEEeccccccCCC--cEEEcCHHhHHHHHhh---CCce--------
Q 013461 242 -----SNSFGVLGRS--GRGLTEHCGVPVDKIDIVTAAMGHALATEG--GFCTGSARVVDHQRLS---SSGY-------- 301 (442)
Q Consensus 242 -----a~~~g~~G~~--g~g~~~~~~v~~~~~diii~S~sK~lg~~G--G~v~g~~~~i~~l~~~---~~~~-------- 301 (442)
.++.-++-+. +.|.. ..++...++|++++|++|+++.++ ||+++++++++.++.. ..++
T Consensus 182 ~~l~~~~~~~li~Dea~~~g~~-~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (393)
T 1vjo_A 182 GELCREFGTLLLVDTVTSLGGV-PIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLG 260 (393)
T ss_dssp HHHHHHHTCEEEEECTTTTTTS-CCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHH
T ss_pred HHHHHHcCCEEEEECCccccCc-CCcccccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceecCcHhhh
Confidence 1111111110 11110 112222356999999999997554 8999999999887532 0111
Q ss_pred ------eccC-CCcHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHhhccCCCceeecCCC---CCEEEEEecCCCC
Q 013461 302 ------VFSA-SLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNPE---SPIVFLILEKSTG 369 (442)
Q Consensus 302 ------~~s~-s~~p~~aaaa~aal~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~---~~i~~~~~~~~~~ 369 (442)
.+.. +.++..++++.++++.+.+ .++++++++++++++.+.|+++ |+++..+.. ..++++.++...
T Consensus 261 ~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~- 338 (393)
T 1vjo_A 261 KYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPDGV- 338 (393)
T ss_dssp HHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCTTC-
T ss_pred hhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCcccCCccccCCcEEEEEcCCCC-
Confidence 2222 5677777778888887643 2568889999999999999987 887764322 356777763211
Q ss_pred CchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEe-cCCCCHHHHHHHHHHHHHHH
Q 013461 370 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 370 ~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~-~~~~t~eei~~~i~~l~~~~ 434 (442)
+ ..++++.++++.||.+.++..+.. +..+||++ +...+++++++++++|++++
T Consensus 339 ----~---~~~~~~~l~~~~gi~v~~g~~~~~-----~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 339 ----D---GKAVARRLLNEHNIEVGGGLGELA-----GKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp ----C---HHHHHHHHHHHHCEECEECCGGGT-----TTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred ----C---HHHHHHHHHhhCCEEEecCccccC-----CCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 1 235777654444999998765421 35699995 45567888999999998875
No 118
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.87 E-value=4.4e-21 Score=193.50 Aligned_cols=308 Identities=18% Similarity=0.224 Sum_probs=199.3
Q ss_pred eEEEee-cCCCCCCCCChHHHHHHHHHHH-hcCCCCCccCccccCcHHH--HHHH-HHHHhhhCCCcEEE-EcchHHHHH
Q 013461 110 EVVNFA-SANYLGLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTIDVH--LDCE-ARIAKFLGTPDSIL-YSYGLSTMF 183 (442)
Q Consensus 110 ~~id~~-s~~~l~~~~~p~v~ea~~~~l~-~~g~~~~~~~~~~g~~~~~--~~le-~~lA~~~g~e~~i~-~~sG~~a~~ 183 (442)
+.|++. +.|++ +|+|++++.+++. .|+.++++++.+.|..... ++++ +++++++|.+.+.+ +++|++|+.
T Consensus 46 ~~i~l~~~~~~~----~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~ 121 (447)
T 3h7f_A 46 DTLEMIASENFV----PRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANA 121 (447)
T ss_dssp HSEECCTTCCCC----CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH
T ss_pred CceeEecCCCCC----CHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHH
Confidence 457774 44653 8999999999885 5766666666555554443 5556 99999999988877 899999999
Q ss_pred hhhhhhccCCCEEEeCCCchHH-HHHHH--Hh--cCCeEEEec------CCCHHHHHHHHHhhcccccc-----------
Q 013461 184 SAIPCFCKKGDLIVADEGVHWG-IQNGL--YL--SRSTVVYFK------HNDMDSLRNTLERVTADNKR----------- 241 (442)
Q Consensus 184 ~ai~a~~~~gd~Vi~~~~~h~s-~~~~~--~l--~g~~v~~~~------~~d~~~Le~~l~~~~~~~~~----------- 241 (442)
.++.+++++||.|+++.+.|.+ +..+. .. .+..++.++ +.|++++++.++....+...
T Consensus 122 ~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~~ 201 (447)
T 3h7f_A 122 AVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVLD 201 (447)
T ss_dssp HHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCCSCCC
T ss_pred HHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCCCCccC
Confidence 9999999999999999998866 22221 11 233455554 35889999988653322110
Q ss_pred ---------cccccccccC--CCccc---cccCCCCCceeEEEEecccccc-CCCcEEEcCHHhHHHHHhhCCceeccCC
Q 013461 242 ---------SNSFGVLGRS--GRGLT---EHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSARVVDHQRLSSSGYVFSAS 306 (442)
Q Consensus 242 ---------a~~~g~~G~~--g~g~~---~~~~v~~~~~diii~S~sK~lg-~~GG~v~g~~~~i~~l~~~~~~~~~s~s 306 (442)
.|++-++-+. ..|.. .+.+.. +..|+++.|+||+++ ..|||+++++++++.++....++.+++.
T Consensus 202 l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~~gG~i~~~~~~~~~l~~~~~~~~~~~~ 280 (447)
T 3h7f_A 202 FAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGGRSGLIVGKQQYAKAINSAVFPGQQGGP 280 (447)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCCSCEEEEECGGGHHHHHHHHTTTTCSSC
T ss_pred HHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCCCeEEEEECHHHHHHHhhhcCCcccCCc
Confidence 2222111111 11110 112221 356899999999996 5689999999999888765445444444
Q ss_pred CcHHHHHHHHHHHHHH-h-cChHHHHHHHHHHHHHHHhhccC----CCceeec-CCCCCEEEEEecCCCCCchhhHHHHH
Q 013461 307 LPPYLASAAITAIDVL-E-ENPDLITKLKKNTAILRTGLSDI----HGLSIAS-NPESPIVFLILEKSTGSMKNDLQLLE 379 (442)
Q Consensus 307 ~~p~~aaaa~aal~~l-~-~~~~~~~~l~~~~~~l~~~L~~~----~g~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~ 379 (442)
.++..++ +.+++... + +.++++++++++++++.+.|.+. +|+++.. ...++++++.+..... + .
T Consensus 281 ~~~~~~a-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~----~ 351 (447)
T 3h7f_A 281 LMHVIAG-KAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPL----D----G 351 (447)
T ss_dssp CHHHHHH-HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSC----C----H
T ss_pred cHHHHHH-HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCCC----C----H
Confidence 4443333 33444443 2 23467888999999999999875 4777754 2467777777743210 1 1
Q ss_pred HHHHHHHHhCCEEEe----ec--cCcccccCCCCCceEEEecCC----CCHHHHHHHHHHHHHHHHH
Q 013461 380 DIADWALKEDGVFVV----TS--KRSMLDKCRLPVGIRLFVSAA----HSEADLVKACESLKRISAV 436 (442)
Q Consensus 380 ~i~~~~L~~~GV~v~----~~--~~~~~~~~~~~~~iRi~~~~~----~t~eei~~~i~~l~~~~~~ 436 (442)
+.+.++|+++||.+. ++ .++. .+.++|++++.. +|++|+++++++|++++.+
T Consensus 352 ~~~~~~l~~~GI~v~~~~i~~~~~~p~-----~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 352 QAAEDLLHEVGITVNRNAVPNDPRPPM-----VTSGLRIGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp HHHHHHHHHTTEECBC------------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCeEEecccCCCCCCCCC-----CCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 234446777899988 33 1111 145699988754 6899999999999998764
No 119
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.87 E-value=3.8e-21 Score=191.06 Aligned_cols=312 Identities=16% Similarity=0.169 Sum_probs=204.1
Q ss_pred eeEEEeecC-CCCCCCCChHHHHHHHHHHHh-cCCCCCccCccccCcHHHHHHH----HHHHhhhCCCcE-EEEcchHHH
Q 013461 109 KEVVNFASA-NYLGLIGHEKLLESCTSALEK-YGVGSCGPRGFYGTIDVHLDCE----ARIAKFLGTPDS-ILYSYGLST 181 (442)
Q Consensus 109 ~~~id~~s~-~~l~~~~~p~v~ea~~~~l~~-~g~~~~~~~~~~g~~~~~~~le----~~lA~~~g~e~~-i~~~sG~~a 181 (442)
+++|||.++ +++ +|++++++.+++.+ ++.+++.++...|.. .+..++ +.+++++|.+.. +++++|++|
T Consensus 23 ~~~i~~~~~~~~~----~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~-~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a 97 (407)
T 2dkj_A 23 REGLELIASENFV----SKQVREAVGSVLTNKYAEGYPGARYYGGCE-VIDRVESLAIERAKALFGAAWANVQPHSGSQA 97 (407)
T ss_dssp HTSEECCTTCCCC----CHHHHHHHTSGGGGCCCCEETTEESSSCCH-HHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred hcceeeccCCCCC----CHHHHHHHHhhhhcCcccCCCcccccCCch-HHHHHHHHHHHHHHHHhCCCcceEEecchHHH
Confidence 467888544 554 79999999999875 544444433333443 233343 599999998766 667899999
Q ss_pred HHhhhhhhccCCCEEEeCCCchHHHH---HHHHhcCC--eEEEec------CCCHHHHHHHHHhhccccc--------c-
Q 013461 182 MFSAIPCFCKKGDLIVADEGVHWGIQ---NGLYLSRS--TVVYFK------HNDMDSLRNTLERVTADNK--------R- 241 (442)
Q Consensus 182 ~~~ai~a~~~~gd~Vi~~~~~h~s~~---~~~~l~g~--~v~~~~------~~d~~~Le~~l~~~~~~~~--------~- 241 (442)
+..++.++.++||.|+++.++|.++. ..++..|. .++.++ ..|++++++.+++...... .
T Consensus 98 ~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~~~ 177 (407)
T 2dkj_A 98 NMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRF 177 (407)
T ss_dssp HHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCCSC
T ss_pred HHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEeccccCCC
Confidence 99999999999999999999998763 33333444 445553 2478899988874211100 0
Q ss_pred -----------cccccccccC--CCccccccCCC---CCceeEEEEecccccc-CCCcEEEcC-HHhHHHHHhhCCceec
Q 013461 242 -----------SNSFGVLGRS--GRGLTEHCGVP---VDKIDIVTAAMGHALA-TEGGFCTGS-ARVVDHQRLSSSGYVF 303 (442)
Q Consensus 242 -----------a~~~g~~G~~--g~g~~~~~~v~---~~~~diii~S~sK~lg-~~GG~v~g~-~~~i~~l~~~~~~~~~ 303 (442)
.|+.-++-+. +.|... .+.. .+..|+++.|+||+++ ..|||++++ +++++.++.....+..
T Consensus 178 ~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~~~~~~~~di~~~s~sK~l~g~~~G~~~~~~~~~~~~l~~~~~~~~~ 256 (407)
T 2dkj_A 178 WDFKAFREIADEVGAYLVVDMAHFAGLVA-AGLHPNPLPYAHVVTSTTHKTLRGPRGGLILSNDPELGKRIDKLIFPGIQ 256 (407)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTTHHHHH-TTCSCCCTTTCSEEEEESSGGGCCCSCEEEEESCHHHHHHHHHHHTTTTC
T ss_pred CCHHHHHHHHHHcCCEEEEEccccccccc-cCccCCccccccEEEEeccccCCCCCceEEEECCHHHHHHHHhhhccccc
Confidence 1221111110 001110 0110 1236999999999994 668999999 8998887654333322
Q ss_pred cCCCcHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHhhccCCCceeec-CCCCCEEEEEecCCCCCchhhHHHHHH
Q 013461 304 SASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIAS-NPESPIVFLILEKSTGSMKNDLQLLED 380 (442)
Q Consensus 304 s~s~~p~~aaaa~aal~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~ 380 (442)
.+.++..++++.++++.+. ..++++++++++++++.+.|+++ |+++.. +..++++++.++.. + .+ ..+
T Consensus 257 -~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~---~~---~~~ 327 (407)
T 2dkj_A 257 -GGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFLVDLRPK-G---LT---GKE 327 (407)
T ss_dssp -SSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGG-T---CC---HHH
T ss_pred -CCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCceEEEEECccc-C---CC---HHH
Confidence 2345666656677887653 23568889999999999999987 888764 34678888887431 0 01 235
Q ss_pred HHHHHHHhCCEEEeeccCcccc-cCCCCCceEEEecC----CCCHHHHHHHHHHHHHHHHH
Q 013461 381 IADWALKEDGVFVVTSKRSMLD-KCRLPVGIRLFVSA----AHSEADLVKACESLKRISAV 436 (442)
Q Consensus 381 i~~~~L~~~GV~v~~~~~~~~~-~~~~~~~iRi~~~~----~~t~eei~~~i~~l~~~~~~ 436 (442)
+.+. |.++||.+.++..+... ....+..+|++++. .+|++|+++++++|++++++
T Consensus 328 ~~~~-l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 328 AEER-LDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp HHHH-HHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred HHHH-HHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 6664 56679999987643110 00113569999975 37999999999999998876
No 120
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.87 E-value=3.4e-21 Score=192.10 Aligned_cols=310 Identities=18% Similarity=0.175 Sum_probs=182.7
Q ss_pred EeecCCCCCCCCChHHHHHHHHHHH-hcCCCCCccCccccCc--H-HHHHHHHHHHhhhCCCcE-EEEcchHHHHHhhhh
Q 013461 113 NFASANYLGLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTI--D-VHLDCEARIAKFLGTPDS-ILYSYGLSTMFSAIP 187 (442)
Q Consensus 113 d~~s~~~l~~~~~p~v~ea~~~~l~-~~g~~~~~~~~~~g~~--~-~~~~le~~lA~~~g~e~~-i~~~sG~~a~~~ai~ 187 (442)
.+++.|+ .||+|++++.+++. .++.++++++...+.. + ....+++.+++++|.+.. +++++|++++..++.
T Consensus 35 ~~~~~n~----~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~ 110 (420)
T 3gbx_A 35 LIASENY----TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYT 110 (420)
T ss_dssp CCTTCCC----CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHH
T ss_pred eeccCCC----CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHH
Confidence 3466676 38999999999984 4654554443322222 2 333455789999998765 558999999999999
Q ss_pred hhccCCCEEEeCCCchHHHH-HHH--HhcCC--eEEEec-----CCCHHHHHHHHHhhcccccc----------------
Q 013461 188 CFCKKGDLIVADEGVHWGIQ-NGL--YLSRS--TVVYFK-----HNDMDSLRNTLERVTADNKR---------------- 241 (442)
Q Consensus 188 a~~~~gd~Vi~~~~~h~s~~-~~~--~l~g~--~v~~~~-----~~d~~~Le~~l~~~~~~~~~---------------- 241 (442)
+++++||.|+++.++|.+.. .+. ...+. ..+.++ ..|+++|++.+++.......
T Consensus 111 ~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~l~ 190 (420)
T 3gbx_A 111 ALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMR 190 (420)
T ss_dssp HHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTCCSCCCHHHHH
T ss_pred HhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCccCCccCHHHHH
Confidence 99999999999999998733 222 22232 333332 25899999998764221100
Q ss_pred ----cccccccccC--CCccc---cccCCCCCceeEEEEeccccc-cCCCcEEEcCH---HhHHHHHhhCCceeccCCCc
Q 013461 242 ----SNSFGVLGRS--GRGLT---EHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSA---RVVDHQRLSSSGYVFSASLP 308 (442)
Q Consensus 242 ----a~~~g~~G~~--g~g~~---~~~~v~~~~~diii~S~sK~l-g~~GG~v~g~~---~~i~~l~~~~~~~~~s~s~~ 308 (442)
.|++-++-+. +.|.. .+... ....|++++|+||++ |..|||+++++ ++.+.++....+..+++..+
T Consensus 191 ~l~~~~~~~li~De~~~~~~~~~~~~~~~-~~~~di~~~s~sK~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (420)
T 3gbx_A 191 EIADSIGAYLFVDMAHVAGLIAAGVYPNP-VPHAHVVTTTTHKTLAGPRGGLILAKGGDEELYKKLNSAVFPSAQGGPLM 269 (420)
T ss_dssp HHHHHTTCEEEEECTTTHHHHHTTSSCCS-TTTSSEEEEESSGGGCSCSCEEEEESSCCHHHHHHHHHHHC----CCCCH
T ss_pred HHHHHcCCEEEEECCcchhceecccCCcc-cccCCEEEeecccCCCCCCceEEEEcCCcHHHHHHhhhhcCCCCCCCcch
Confidence 2222111111 11111 11111 134789999999999 56789999987 77777765433333333333
Q ss_pred HHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHhhccCCCceeecC-CCCCEEEEEecCCCCCchhhHHHHHHHHHHHH
Q 013461 309 PYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASN-PESPIVFLILEKSTGSMKNDLQLLEDIADWAL 386 (442)
Q Consensus 309 p~~aaaa~aal~~l~-~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L 386 (442)
+..++++.+....++ ..++++++++++++++.+.|.+. |+++... ..++++++.+..... + ...+.+ .|
T Consensus 270 ~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~-~l 340 (420)
T 3gbx_A 270 HVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFLLDLVDKNL----T---GKEADA-AL 340 (420)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTC----C---HHHHHH-HH
T ss_pred hHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCCCeEEEEEcCCCCC----C---HHHHHH-HH
Confidence 333333323223332 23567889999999999999885 8887642 467788887743110 1 123444 56
Q ss_pred HhCCEEEeeccCccccc-CCCCCceEEEecCC----CCHHHHHHHHHHHHHHHHH
Q 013461 387 KEDGVFVVTSKRSMLDK-CRLPVGIRLFVSAA----HSEADLVKACESLKRISAV 436 (442)
Q Consensus 387 ~~~GV~v~~~~~~~~~~-~~~~~~iRi~~~~~----~t~eei~~~i~~l~~~~~~ 436 (442)
+++||.+.+...+.... ...+.++||+++.. .+++|+++++++|++++++
T Consensus 341 ~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 341 GRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp HHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 77799999843322111 11134599998754 5689999999999988754
No 121
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.87 E-value=2e-20 Score=186.88 Aligned_cols=314 Identities=17% Similarity=0.202 Sum_probs=184.1
Q ss_pred eEEEe-ecCCCCCCCCChHHHHHHHHHHH-hcCCCCCccCccccCc--HHHHHHH-HHHHhhhCCCcE-EEEcchHHHHH
Q 013461 110 EVVNF-ASANYLGLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTI--DVHLDCE-ARIAKFLGTPDS-ILYSYGLSTMF 183 (442)
Q Consensus 110 ~~id~-~s~~~l~~~~~p~v~ea~~~~l~-~~g~~~~~~~~~~g~~--~~~~~le-~~lA~~~g~e~~-i~~~sG~~a~~ 183 (442)
+.+++ ++.|++ +|+|++++.+++. .|+.++++++...+.. +...+++ +.+++++|.+.+ +++++|++|+.
T Consensus 33 ~~i~l~~~~~~~----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~ 108 (425)
T 3ecd_A 33 SQVELIASENIV----SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANG 108 (425)
T ss_dssp HSEECCTTCCCC----CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH
T ss_pred cceeeecccCCC----CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHHH
Confidence 45676 445654 8999999999984 5655555444333322 3455554 789999999887 44899999999
Q ss_pred hhhhhhccCCCEEEeCCCchHH-HHHHHH--hcCC--eEEEecCC------CHHHHHHHHHhhcccccc-----------
Q 013461 184 SAIPCFCKKGDLIVADEGVHWG-IQNGLY--LSRS--TVVYFKHN------DMDSLRNTLERVTADNKR----------- 241 (442)
Q Consensus 184 ~ai~a~~~~gd~Vi~~~~~h~s-~~~~~~--l~g~--~v~~~~~~------d~~~Le~~l~~~~~~~~~----------- 241 (442)
.++.+++++||.|+++.++|.+ ...+.. ..+. +++.++.+ |+++|++.+++.......
T Consensus 109 ~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~ 188 (425)
T 3ecd_A 109 AVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYPRKLD 188 (425)
T ss_dssp HHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCCCSCCC
T ss_pred HHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccCCCcCC
Confidence 9999999999999999999987 323332 3444 45566543 789999988743221100
Q ss_pred ---------cccccccccC--CCccc---cccCCCCCceeEEEEecccccc-CCCcEEEcC-HHhHHHHHhhCCceeccC
Q 013461 242 ---------SNSFGVLGRS--GRGLT---EHCGVPVDKIDIVTAAMGHALA-TEGGFCTGS-ARVVDHQRLSSSGYVFSA 305 (442)
Q Consensus 242 ---------a~~~g~~G~~--g~g~~---~~~~v~~~~~diii~S~sK~lg-~~GG~v~g~-~~~i~~l~~~~~~~~~s~ 305 (442)
.|++-++-+. ..|.. .+++.. ..+|++++|+||+++ ..|||++++ +++.+.+.........++
T Consensus 189 l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~-~~~di~~~s~sK~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 267 (425)
T 3ecd_A 189 FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPV-EHAHVVTSTTHKTLRGPRGGFVLTNDEEIAKKINSAVFPGLQGG 267 (425)
T ss_dssp HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGG-GTCSEEEEESSGGGCCCSCEEEEESCHHHHHHHHHHHC-----C
T ss_pred HHHHHHHHHHcCCEEEEECcChHhhhhcccccCch-hcCcEEEecCCcccCCCCcEEEEeCCHHHHHHHHhhhCccccCC
Confidence 2222111111 11111 111111 236899999999994 568999988 567776654332222223
Q ss_pred CCcHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHhhccCCCceeecC-CCCCEEEEEecCCCCCchhhHHHHHHHHH
Q 013461 306 SLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASN-PESPIVFLILEKSTGSMKNDLQLLEDIAD 383 (442)
Q Consensus 306 s~~p~~aaaa~aal~~l~-~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~i~~ 383 (442)
..++..++++.+..+.++ ..++++++++++.+++.+.|.+. |+++..+ ..++++++.+..... + ...+.+
T Consensus 268 ~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~ 339 (425)
T 3ecd_A 268 PLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLLVDLRPKGL----K---GAQVEQ 339 (425)
T ss_dssp CCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTC----C---HHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCCceEEEEEeCCCCC----C---HHHHHH
Confidence 333444443333333332 23468889999999999999885 8877643 467788887743110 1 123444
Q ss_pred HHHHhCCEEEeeccCccccc-CCCCCceEEE----ecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 384 WALKEDGVFVVTSKRSMLDK-CRLPVGIRLF----VSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 384 ~~L~~~GV~v~~~~~~~~~~-~~~~~~iRi~----~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
.|+++||.+.+...+.... ...+.++|++ .+..++++|+++++++|++++++.
T Consensus 340 -~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 340 -ALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp -HHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 5667799998654332111 1113469999 445566999999999999988765
No 122
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.86 E-value=1.5e-20 Score=186.68 Aligned_cols=305 Identities=12% Similarity=0.139 Sum_probs=195.8
Q ss_pred CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhh--hC---CCcEEEEcchHHHH
Q 013461 108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF--LG---TPDSILYSYGLSTM 182 (442)
Q Consensus 108 G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~--~g---~e~~i~~~sG~~a~ 182 (442)
|+++|||+++++ ++..+|.+++++.+++++.+.... ...|+......++++.+|++ .| .+++++++++++++
T Consensus 32 ~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~--~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al 108 (400)
T 3asa_A 32 QHTVINLSIGDT-TQPLNASVAEAFASSIARLSSPTT--CRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL 108 (400)
T ss_dssp TSCCEECSSCCC-CCCCCHHHHHHHHHHHHHHTSSSC--CCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred CCceEeccCCCC-CCCCCHHHHHHHHHHHhccccccc--ccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence 567899988764 556789999999999987543210 11233334567899999999 46 24567777777888
Q ss_pred HhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCe-EEEecCCCHH----HHH---------------------------H
Q 013461 183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRST-VVYFKHNDMD----SLR---------------------------N 230 (442)
Q Consensus 183 ~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~-v~~~~~~d~~----~Le---------------------------~ 230 (442)
..++ .++++||.|+++.++|.++...++..|.+ ++.++.++.+ +++ +
T Consensus 109 ~~~~-~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~ 187 (400)
T 3asa_A 109 FRLL-SFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRA 187 (400)
T ss_dssp HHHH-HHHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHHH-HHcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhhccCccEEEEeCCCCCCCCcCCHHHHHH
Confidence 8755 45589999999999999998888888888 8777653211 111 1
Q ss_pred HHHhhccccccccccccc--------ccCCCccccccCCCC-CceeEEEEeccccccCCC---cEEEcCHHh-------H
Q 013461 231 TLERVTADNKRSNSFGVL--------GRSGRGLTEHCGVPV-DKIDIVTAAMGHALATEG---GFCTGSARV-------V 291 (442)
Q Consensus 231 ~l~~~~~~~~~a~~~g~~--------G~~g~g~~~~~~v~~-~~~diii~S~sK~lg~~G---G~v~g~~~~-------i 291 (442)
+.+-.. .++.-++ +..+........++. .+++++++||||++|+.| ||+++++++ +
T Consensus 188 l~~~~~-----~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~ 262 (400)
T 3asa_A 188 IVHYAI-----EHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFV 262 (400)
T ss_dssp HHHHHH-----HTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBH
T ss_pred HHHHHH-----HcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchhhhH
Confidence 111000 1111111 001110111112211 245799999999998776 999999888 6
Q ss_pred HHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEE-ecCCCCC
Q 013461 292 DHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI-LEKSTGS 370 (442)
Q Consensus 292 ~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~-~~~~~~~ 370 (442)
+.+........++ +.+++.++++.++++.. ..++++++++++++++.+.|++. |+++..+..++++++. ++....
T Consensus 263 ~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~- 338 (400)
T 3asa_A 263 IQDWERFLSTTFN-GASIPAQEAGVAGLSIL-PQLEAIHYYRENSDLLRKALLAT-GFEVFGGEHAPYLWVKPTQANIS- 338 (400)
T ss_dssp HHHHHHHHHHHCC-CCCHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHT-TCEEEECSSSSEEEEECCCTTCC-
T ss_pred HHHHHHHhccCcc-CCChHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCceEEEEeccCCCCC-
Confidence 6554321122222 34666666677777654 44568899999999999999987 8887755567888888 642111
Q ss_pred chhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 371 MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 371 ~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
..++++.+++++||.+.++..+... . +..+||++ ..|++|+++++++|++++++.
T Consensus 339 -------~~~~~~~l~~~~gv~v~~g~~f~~~-~--~~~iRis~--~~~~e~i~~~l~~l~~~~~~~ 393 (400)
T 3asa_A 339 -------DRDLFDFFLREYHIAITPGIGFGRS-G--SGFVRFSS--LGKREDILAACERLQMAPALQ 393 (400)
T ss_dssp -------TTTHHHHHHHHHSEECEEGGGGCGG-G--TTCEEEEC--CSCHHHHHHHHHHHHC-----
T ss_pred -------HHHHHHHHHHhCCEEEeChhHhCCC-C--CCEEEEEe--eCCHHHHHHHHHHHHHHHHhh
Confidence 1145666666669999988654311 1 24599994 468999999999999887654
No 123
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.86 E-value=3.2e-21 Score=193.31 Aligned_cols=303 Identities=12% Similarity=0.030 Sum_probs=203.4
Q ss_pred eeEEEeecCCCCCCCCChHH--HHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh-----CC--Cc---EEEEc
Q 013461 109 KEVVNFASANYLGLIGHEKL--LESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-----GT--PD---SILYS 176 (442)
Q Consensus 109 ~~~id~~s~~~l~~~~~p~v--~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~-----g~--e~---~i~~~ 176 (442)
+++|||+++++..++.+|.+ ++++.+++.+.+ . ..|+......++++.+|+++ +. ++ +++++
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~--~----~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~ 120 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDE--I----FPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTN 120 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGG--T----SSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEES
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHHHhcCccc--c----cccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcC
Confidence 46899988765233345666 777666654311 1 11222223478888888888 64 46 77788
Q ss_pred chHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHh-cCCeEEEecC------CCHHHHHHHHHhhcccccc--------
Q 013461 177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYL-SRSTVVYFKH------NDMDSLRNTLERVTADNKR-------- 241 (442)
Q Consensus 177 sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l-~g~~v~~~~~------~d~~~Le~~l~~~~~~~~~-------- 241 (442)
+|++++..++.+++++||.|+++.++|.++...++. .|.+++.++. .|+++|++.+++.....+.
T Consensus 121 g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~n 200 (430)
T 2x5f_A 121 ALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNN 200 (430)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCT
T ss_pred CchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCC
Confidence 889999999999999999999999999999999998 8999988874 2678898888762111110
Q ss_pred -------------------c-----ccccccccC--------CCcccccc-CCC-CCce---eEEEEeccccccCCC---
Q 013461 242 -------------------S-----NSFGVLGRS--------GRGLTEHC-GVP-VDKI---DIVTAAMGHALATEG--- 281 (442)
Q Consensus 242 -------------------a-----~~~g~~G~~--------g~g~~~~~-~v~-~~~~---diii~S~sK~lg~~G--- 281 (442)
. |++-++-+. |.+..... .+. ..+. +++++||||++|+.|
T Consensus 201 ptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri 280 (430)
T 2x5f_A 201 PTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRV 280 (430)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCC
T ss_pred CCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCe
Confidence 2 333222111 11000100 110 0234 788999999998666
Q ss_pred cEEEc---CHHhHHHHHhhCCce--eccCCCcHHHHHHHHHHHH----HHhcChHHHHHHHHHHHHHHHhhc----cCCC
Q 013461 282 GFCTG---SARVVDHQRLSSSGY--VFSASLPPYLASAAITAID----VLEENPDLITKLKKNTAILRTGLS----DIHG 348 (442)
Q Consensus 282 G~v~g---~~~~i~~l~~~~~~~--~~s~s~~p~~aaaa~aal~----~l~~~~~~~~~l~~~~~~l~~~L~----~~~g 348 (442)
||+++ ++++++.+....... ....+.+++.++++.++++ ..++....+++++++++++.+.|+ +. |
T Consensus 281 G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g 359 (430)
T 2x5f_A 281 GFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHS-H 359 (430)
T ss_dssp EEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-T
T ss_pred EEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-C
Confidence 99999 999988876532210 0123457787788888887 333334478889999999999998 54 7
Q ss_pred ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHH
Q 013461 349 LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACE 428 (442)
Q Consensus 349 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~ 428 (442)
+++..+..+.++++.++ .. + ..++++.+++++||.+.++. +..+||+++. .+++|++++++
T Consensus 360 ~~~~~~~~g~~~~~~~~-~~-----~---~~~~~~~l~~~~gi~v~~g~---------~~~iRis~~~-~~~e~i~~~~~ 420 (430)
T 2x5f_A 360 WQAYDFNSGYFMAIKVH-DV-----D---PEALRKHLIDKYSIGVIALN---------ATDIRIAFSC-VEKDDIPHVFD 420 (430)
T ss_dssp EEECCCCBSSEEEEEES-SS-----C---HHHHHHHHHHHHCEECEECS---------SSEEEEEGGG-SCGGGHHHHHH
T ss_pred ceeeCCCceEEEEeCCC-CC-----C---HHHHHHHHHHhCCEEEecCC---------CCeEEEEEec-CCHHHHHHHHH
Confidence 77765434456788774 11 1 23577766653699998861 2459999996 48999999999
Q ss_pred HHHHHHHHH
Q 013461 429 SLKRISAVV 437 (442)
Q Consensus 429 ~l~~~~~~~ 437 (442)
+|+++++++
T Consensus 421 ~l~~~l~~~ 429 (430)
T 2x5f_A 421 SIAKAIDDL 429 (430)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999988764
No 124
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.86 E-value=1.4e-20 Score=183.06 Aligned_cols=296 Identities=18% Similarity=0.206 Sum_probs=191.1
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhh
Q 013461 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPC 188 (442)
Q Consensus 109 ~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a 188 (442)
.++|||+++.... ++|++++++.+... + ...|+..+...+|++++|+++|.++++++++|++++..++.+
T Consensus 3 ~~~i~~~~~~~~~--p~~~~~~a~~~~~~--~------~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~ 72 (347)
T 1jg8_A 3 HMMIDLRSDTVTK--PTEEMRKAMAQAEV--G------DDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMA 72 (347)
T ss_dssp --CEECSCGGGCC--CCHHHHHHHHTCCC--C------CGGGTCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHH
T ss_pred ceEEEeccccCCC--CCHHHHHHHhcCCC--C------CcccCCChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHH
Confidence 4678998775432 46888887754321 1 113455667789999999999999999999999999999999
Q ss_pred hccCCCEEEeCCCchHHHHH---HHHhcCCeEEEecCC-----CHHHHHHHHHhhc---ccccc----------------
Q 013461 189 FCKKGDLIVADEGVHWGIQN---GLYLSRSTVVYFKHN-----DMDSLRNTLERVT---ADNKR---------------- 241 (442)
Q Consensus 189 ~~~~gd~Vi~~~~~h~s~~~---~~~l~g~~v~~~~~~-----d~~~Le~~l~~~~---~~~~~---------------- 241 (442)
+.++||.|+++.++|.+.+. .+...|++++.+ .+ |++++++.+++.. ++.+.
T Consensus 73 ~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~ 151 (347)
T 1jg8_A 73 HTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVP 151 (347)
T ss_dssp HCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCC
T ss_pred hcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCc
Confidence 99999999999999987653 466788988877 42 7788887775310 01111
Q ss_pred ------------cccccccccCCC--ccccccCCCC----CceeEEEEeccccccCC-CcEEEcCHHhHHHHHhhCCcee
Q 013461 242 ------------SNSFGVLGRSGR--GLTEHCGVPV----DKIDIVTAAMGHALATE-GGFCTGSARVVDHQRLSSSGYV 302 (442)
Q Consensus 242 ------------a~~~g~~G~~g~--g~~~~~~v~~----~~~diii~S~sK~lg~~-GG~v~g~~~~i~~l~~~~~~~~ 302 (442)
.|++-++-+... +...+.+.++ ...|.++.|+||++|++ ||++++++++++.++.....+.
T Consensus 152 ~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~~~~~~~~~ 231 (347)
T 1jg8_A 152 LENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLG 231 (347)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCceEEEEcCHHHHHHHHHHHHHcC
Confidence 111111111100 0000112221 13577788999999854 4477889988877643221111
Q ss_pred ccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceee-cCCCCCEEEEEecCCCCCchhhHHHHHHH
Q 013461 303 FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA-SNPESPIVFLILEKSTGSMKNDLQLLEDI 381 (442)
Q Consensus 303 ~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~i 381 (442)
.+...++..++++..+++...+ ..++..++++++.+.|+++ |+++. .++.++++++.++.. + .+ ..++
T Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~-~---~~---~~~~ 300 (347)
T 1jg8_A 232 GGMRQAGVLAAAGIIALTKMVD---RLKEDHENARFLALKLKEI-GYSVNPEDVKTNMVILRTDNL-K---VN---AHGF 300 (347)
T ss_dssp CCCSSTHHHHHHHHHHHHHSST---THHHHHHHHHHHHHHHHHH-TCBCCGGGCCSSEEEEECTTS-S---SC---HHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc-CceeccCCCcceEEEEEcccc-c---CC---HHHH
Confidence 1222345566666666654322 2344456778888888887 77652 245678888877421 1 01 2357
Q ss_pred HHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 382 ADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 382 ~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
++.++ ++||.+.+.. +..+|++++..+|++|+++++++|++++++
T Consensus 301 ~~~l~-~~gi~v~~~~---------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 301 IEALR-NSGVLANAVS---------DTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp HHHHH-HHTEECEEEE---------TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HCCCEEecCC---------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 77654 5599998753 134999999889999999999999998765
No 125
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.86 E-value=7.4e-20 Score=186.86 Aligned_cols=309 Identities=11% Similarity=0.041 Sum_probs=196.4
Q ss_pred ChHHHHHHHHHHHhcCC-CCCccCccccCcHHHHHHHHHHHhhhC-----CCcEEEEcchHHHHHhhhhhhccCCC----
Q 013461 125 HEKLLESCTSALEKYGV-GSCGPRGFYGTIDVHLDCEARIAKFLG-----TPDSILYSYGLSTMFSAIPCFCKKGD---- 194 (442)
Q Consensus 125 ~p~v~ea~~~~l~~~g~-~~~~~~~~~g~~~~~~~le~~lA~~~g-----~e~~i~~~sG~~a~~~ai~a~~~~gd---- 194 (442)
+..+.+++.+++++++. ...++....|..++++++++.++++.| .+++++++++++++..++.+++++||
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d 182 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRT 182 (498)
T ss_dssp CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSE
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 45667888888887642 233344445666666666666666654 35778888888999999999999875
Q ss_pred EEEeCCCchHHHHHHHHhcCCeEEEecCC-------CHHHHHHHHHhhccc--ccc------------------------
Q 013461 195 LIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTAD--NKR------------------------ 241 (442)
Q Consensus 195 ~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-------d~~~Le~~l~~~~~~--~~~------------------------ 241 (442)
.|+++.+.|..+...++..|++++.++++ |+++|++.+++.... .+.
T Consensus 183 ~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~ 262 (498)
T 3ihj_A 183 GVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIH 262 (498)
T ss_dssp EEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred EEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHH
Confidence 99999999999999999999999988865 789999998764211 000
Q ss_pred -------------cccccccccC--CCcccccc-CCCC---Cc-eeEEEEeccccc-cC---CCcEEE---cCHHhHHHH
Q 013461 242 -------------SNSFGVLGRS--GRGLTEHC-GVPV---DK-IDIVTAAMGHAL-AT---EGGFCT---GSARVVDHQ 294 (442)
Q Consensus 242 -------------a~~~g~~G~~--g~g~~~~~-~v~~---~~-~diii~S~sK~l-g~---~GG~v~---g~~~~i~~l 294 (442)
+|+..+++.. ...+.... ++.+ ++ ..|+++||||++ |. .+||++ +++++++.+
T Consensus 263 la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l 342 (498)
T 3ihj_A 263 FAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQL 342 (498)
T ss_dssp HHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHH
T ss_pred HHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHH
Confidence 2222222211 00000000 0000 11 247889999999 53 459987 799999888
Q ss_pred HhhCCceeccCCCcHHHHHHHHHHHH-----------HHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEE
Q 013461 295 RLSSSGYVFSASLPPYLASAAITAID-----------VLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI 363 (442)
Q Consensus 295 ~~~~~~~~~s~s~~p~~aaaa~aal~-----------~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~ 363 (442)
...... +. +.+++..+++.++++ ++++...++++++++++++.+.|++++|+++..+..+.++++.
T Consensus 343 ~~~~~~--~~-~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~ 419 (498)
T 3ihj_A 343 VKLLSV--RL-CPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPR 419 (498)
T ss_dssp HHHHHH--SC-CCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCE
T ss_pred HHHHhc--cC-CCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEe
Confidence 654321 22 224444444434442 2333345778899999999999998889888755445555655
Q ss_pred ecCCCCCchh-h--HHHHHH-HHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhh
Q 013461 364 LEKSTGSMKN-D--LQLLED-IADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 364 ~~~~~~~~~~-~--~~~~~~-i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
+..+...... . .....+ ++.++|+++||++.++..+..... +..+|+++. ++++++++++++|++++++.++
T Consensus 420 l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~--~~~~Ris~~--~~~e~l~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 420 IFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREG--TYHFRMTIL--PPVEKLKTVLQKVKDFHINFLE 495 (498)
T ss_dssp ECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTT--CCBEEEECC--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCC--CCEEEEEeC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 5422100000 0 000112 245567777999999887653211 346999995 7999999999999999988876
Q ss_pred c
Q 013461 440 D 440 (442)
Q Consensus 440 ~ 440 (442)
+
T Consensus 496 ~ 496 (498)
T 3ihj_A 496 K 496 (498)
T ss_dssp H
T ss_pred H
Confidence 5
No 126
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.86 E-value=7.4e-20 Score=183.27 Aligned_cols=302 Identities=12% Similarity=0.098 Sum_probs=194.0
Q ss_pred eEEEeecC-CCCCCCCChHHHHHHHHHH---------------HhcCCCCCccCccccCcHHHHHHHHHHHhhhC-----
Q 013461 110 EVVNFASA-NYLGLIGHEKLLESCTSAL---------------EKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG----- 168 (442)
Q Consensus 110 ~~id~~s~-~~l~~~~~p~v~ea~~~~l---------------~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g----- 168 (442)
.+|||.++ |.++ +|.+.+++.++. ..|+. .....++++.+|++++
T Consensus 37 ~~i~l~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-----------~~g~~~lr~~la~~~~~~~g~ 102 (428)
T 1iay_A 37 GVIQMGLAENQLC---LDLIEDWIKRNPKGSICSEGIKSFKAIANFQD-----------YHGLPEFRKAIAKFMEKTRGG 102 (428)
T ss_dssp SBEECSSCCCCSS---HHHHHHHHHHCTTSSTTC----CHHHHHHCCC-----------TTCCHHHHHHHHHHHHHHTTT
T ss_pred ceeeeccccchhh---HHHHHHHHHhccccccccccccccHhhcCCCC-----------CCCcHHHHHHHHHHHHHhcCC
Confidence 46899765 4443 467777776432 22321 1113577777777765
Q ss_pred -----CCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHH-hcCCeEEEecCC-------CHHHHHHHHHhh
Q 013461 169 -----TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY-LSRSTVVYFKHN-------DMDSLRNTLERV 235 (442)
Q Consensus 169 -----~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~-l~g~~v~~~~~~-------d~~~Le~~l~~~ 235 (442)
.++++++++|++++..++.+++++||.|+++.++|.++..++. ..|.+++.++.+ |++++++.+++.
T Consensus 103 ~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 182 (428)
T 1iay_A 103 RVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENA 182 (428)
T ss_dssp CSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHH
T ss_pred CCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHH
Confidence 3466777777899999999999999999999999988877554 678999888753 688888888652
Q ss_pred c---ccccc---------------------------ccccccccc--------CCCccccccCCCC--------CceeEE
Q 013461 236 T---ADNKR---------------------------SNSFGVLGR--------SGRGLTEHCGVPV--------DKIDIV 269 (442)
Q Consensus 236 ~---~~~~~---------------------------a~~~g~~G~--------~g~g~~~~~~v~~--------~~~dii 269 (442)
. ...+. .|+.-++-+ .+.+......+.. .+..++
T Consensus 183 ~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv 262 (428)
T 1iay_A 183 QKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHI 262 (428)
T ss_dssp HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEE
T ss_pred HhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEE
Confidence 1 11110 111111100 1111111011110 133488
Q ss_pred EEeccccccCCC---cEEEc-CHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHh----cChHHHHHHHHHHHHHHH
Q 013461 270 TAAMGHALATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE----ENPDLITKLKKNTAILRT 341 (442)
Q Consensus 270 i~S~sK~lg~~G---G~v~g-~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~----~~~~~~~~l~~~~~~l~~ 341 (442)
+.||||++|+.| ||+++ ++++++.++..... + +.+++.++++.++++..+ ..++++++++++++++.+
T Consensus 263 ~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (428)
T 1iay_A 263 VYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSF--G--LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTN 338 (428)
T ss_dssp EEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTT--S--CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhc--c--cCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998766 99888 68888877654222 2 245666666666665432 224577888899999999
Q ss_pred hhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHH
Q 013461 342 GLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEA 421 (442)
Q Consensus 342 ~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~e 421 (442)
.|.++ |+++..+..+.++++.+...... .+.....++.+.+++++||.+.++..+... .+..+||+++ .+|++
T Consensus 339 ~L~~~-g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~---~~~~iRis~~-~~~~e 411 (428)
T 1iay_A 339 GLEVV-GIKCLKNNAGLFCWMDLRPLLRE--STFDSEMSLWRVIINDVKLNVSPGSSFECQ---EPGWFRVCFA-NMDDG 411 (428)
T ss_dssp HHHHT-TCCBCCCSSSSEEEEECGGGCSS--SSHHHHHHHHHHHHHTSCEECEEGGGGTCS---SSSEEEEECS-SSCHH
T ss_pred HHHhc-CCcccCCCeeEEEEEechhhcCC--CchhHHHHHHHHHHHhCCEEEeCchhhCCC---CCCEEEEEEe-cCCHH
Confidence 99887 88776444667888887431100 011123467776555559999987654321 0245999998 57999
Q ss_pred HHHHHHHHHHHHHHH
Q 013461 422 DLVKACESLKRISAV 436 (442)
Q Consensus 422 ei~~~i~~l~~~~~~ 436 (442)
|+++++++|++++++
T Consensus 412 ~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 412 TVDIALARIRRFVGV 426 (428)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988754
No 127
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.86 E-value=3.1e-20 Score=183.13 Aligned_cols=292 Identities=13% Similarity=0.058 Sum_probs=194.3
Q ss_pred CChHHHHHHHHHHHhcCCCCCccCccccC-cHHHHHHHHHHHhhhCCC--cEEEEcchHHHHHhhhhhh-ccCCCEEEeC
Q 013461 124 GHEKLLESCTSALEKYGVGSCGPRGFYGT-IDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCF-CKKGDLIVAD 199 (442)
Q Consensus 124 ~~p~v~ea~~~~l~~~g~~~~~~~~~~g~-~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~~ai~a~-~~~gd~Vi~~ 199 (442)
.+|.+++++.+++.+...........|.. .+...++++.+|+++|.+ +++++++|++++..++.++ .++||.|+++
T Consensus 28 ~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~ 107 (390)
T 1elu_A 28 LPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLT 107 (390)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEe
Confidence 35789999999998742111000002222 467889999999999965 6888889999999999999 8999999999
Q ss_pred CCchHHHHHH----HHhcCCeEEEecCC-------CHHHHHHHHHhhcccccc-------------------cc----cc
Q 013461 200 EGVHWGIQNG----LYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKR-------------------SN----SF 245 (442)
Q Consensus 200 ~~~h~s~~~~----~~l~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~~-------------------a~----~~ 245 (442)
.+.|.++..+ ++..|++++.++.+ |+++|++.+++.+.-... ++ ..
T Consensus 108 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ 187 (390)
T 1elu_A 108 DCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNY 187 (390)
T ss_dssp TTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSS
T ss_pred cCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCceecCHHHHHHHHhhhhhhc
Confidence 9999987654 45678899888763 455565554321110000 22 22
Q ss_pred ccc--cc--CCCccccccCCCCCceeEEEEeccc-cccCCC-cEEEcCHHhHHHHHhhCCc------------e------
Q 013461 246 GVL--GR--SGRGLTEHCGVPVDKIDIVTAAMGH-ALATEG-GFCTGSARVVDHQRLSSSG------------Y------ 301 (442)
Q Consensus 246 g~~--G~--~g~g~~~~~~v~~~~~diii~S~sK-~lg~~G-G~v~g~~~~i~~l~~~~~~------------~------ 301 (442)
|++ -+ .+.|.. ..++...++|+++.|++| .+|..| ||+++++++++.++....+ +
T Consensus 188 ~~~li~Dea~~~g~~-~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 266 (390)
T 1elu_A 188 PVRVLVDGAQSAGSL-PLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGG 266 (390)
T ss_dssp CCEEEEECTTTBTTB-CCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGG
T ss_pred CcEEEEEcccccCCc-CCChhhcCCCEEEccccccccCCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccch
Confidence 221 11 111111 112222357899999999 556556 9999999888766532110 0
Q ss_pred -ec-cCCCcHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHhhccCCCceeec--CCCCCEEEEEecCCCCCchhh
Q 013461 302 -VF-SASLPPYLASAAITAIDVLEE---NPDLITKLKKNTAILRTGLSDIHGLSIAS--NPESPIVFLILEKSTGSMKND 374 (442)
Q Consensus 302 -~~-s~s~~p~~aaaa~aal~~l~~---~~~~~~~l~~~~~~l~~~L~~~~g~~~~~--~~~~~i~~~~~~~~~~~~~~~ 374 (442)
.+ .++.++..++++.++++.+++ .++++++++++++++.+.|++++|+++.. .+.++++.+.++... +
T Consensus 267 ~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~ 341 (390)
T 1elu_A 267 KRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPL-----G 341 (390)
T ss_dssp GGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSS-----C
T ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCC-----C
Confidence 11 223466666666677776643 35678899999999999999877888764 236778888774211 1
Q ss_pred HHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHH
Q 013461 375 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 433 (442)
Q Consensus 375 ~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~ 433 (442)
..++.+.+ .++||.+.++.. +..+||+++..+|++|+++++++|+++
T Consensus 342 ---~~~~~~~l-~~~gi~v~~~~~--------~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 342 ---HRAIVQKL-EEQRIYLRTIAD--------PDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp ---HHHHHHHH-HHTTEECEEETT--------TTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHH-HHCCEEEEecCC--------CCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 23567654 566999988752 245999999889999999999998753
No 128
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.85 E-value=9.3e-20 Score=178.18 Aligned_cols=283 Identities=13% Similarity=0.117 Sum_probs=189.1
Q ss_pred eeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHHHhh
Q 013461 109 KEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSA 185 (442)
Q Consensus 109 ~~~id~~s~-~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~~a 185 (442)
+++|||++| |.++ .+|.+ + +.. . ..|.... ..++++.+|+++|.+ +++++++|++++..+
T Consensus 29 ~~~i~l~~~~~~~~--~~~~v--a----~~~--~------~~Y~~~~-~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~ 91 (356)
T 1fg7_A 29 NGDVWLNANEYPTA--VEFQL--T----QQT--L------NRYPECQ-PKAVIENYAQYAGVKPEQVLVSRGADEGIELL 91 (356)
T ss_dssp TCSEECSSCCCSSC--CCCCC--C----CCC--T------TSCCCSS-CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHH
T ss_pred CceEEeeCCCCCCC--CCHhH--h----hhh--h------ccCCCcc-HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHH
Confidence 468999876 4444 45665 1 111 0 1122222 478999999999964 566677778999999
Q ss_pred hhhhccCC-CEEEeCCCchHHHHHHHHhcCCeEEEecCC-----CHHHHHHHHHhhccc-------ccc-----------
Q 013461 186 IPCFCKKG-DLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTAD-------NKR----------- 241 (442)
Q Consensus 186 i~a~~~~g-d~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-----d~~~Le~~l~~~~~~-------~~~----------- 241 (442)
+.+++++| |.|+++.++|..+...++..|++++.++.+ |++++++.++ .++. ++.
T Consensus 92 ~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~ 170 (356)
T 1fg7_A 92 IRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRT 170 (356)
T ss_dssp HHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 99999999 999999999999999999999999888753 5666665543 1110 000
Q ss_pred ----c-cccccc-ccCCCccc---cccCC-CCCceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCCceeccCCCc
Q 013461 242 ----S-NSFGVL-GRSGRGLT---EHCGV-PVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLP 308 (442)
Q Consensus 242 ----a-~~~g~~-G~~g~g~~---~~~~v-~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~~~~~s~s~~ 308 (442)
+ |+.-++ .+...+.. ....+ +..+.++++.||||++|+.| ||+++++++++.++.....+ +.+
T Consensus 171 l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~----~~~ 246 (356)
T 1fg7_A 171 LLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPY----PLS 246 (356)
T ss_dssp HHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSS----CSC
T ss_pred HHHhCCCCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHHHHHHHhcCCC----CCC
Confidence 1 221111 11100011 00111 11345899999999998766 99999999999887664443 356
Q ss_pred HHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHH
Q 013461 309 PYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWAL 386 (442)
Q Consensus 309 p~~aaaa~aal~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L 386 (442)
++.++++.++++.... .++.+++++++++++.+.|++++++....++.++++++.++ + ..++.+.+
T Consensus 247 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~--------~---~~~l~~~L- 314 (356)
T 1fg7_A 247 TPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK--------A---SSAVFKSL- 314 (356)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET--------T---HHHHHHHH-
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC--------C---HHHHHHHH-
Confidence 7777777777754322 34577888899999999998874432223456788888773 1 23567654
Q ss_pred HhCCEEEee-ccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHH
Q 013461 387 KEDGVFVVT-SKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 433 (442)
Q Consensus 387 ~~~GV~v~~-~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~ 433 (442)
.++||.+++ +..+.. +..+||+++ +++|+++++++|+++
T Consensus 315 ~~~gI~v~~~g~~~~~-----~~~iRis~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 315 WDQGIILRDQNKQPSL-----SGCLRITVG---TREESQRVIDALRAE 354 (356)
T ss_dssp HHTTEECEECTTSTTC-----TTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred HHCCEEEEECCCCCCC-----CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 567999998 654432 346999997 789999999998753
No 129
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.85 E-value=1.4e-19 Score=179.90 Aligned_cols=291 Identities=13% Similarity=0.084 Sum_probs=197.9
Q ss_pred CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCc---EEEEcchHHHHHhhhhhhccCCCEEEeCC
Q 013461 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD---SILYSYGLSTMFSAIPCFCKKGDLIVADE 200 (442)
Q Consensus 124 ~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~---~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~ 200 (442)
.+|++++++.+++. +.. .....+...++++++++++|.+. ++++++|++++..++.+++++||.|+++.
T Consensus 24 ~~~~v~~a~~~~~~----~~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~ 95 (411)
T 3nnk_A 24 ADPRVLRAMSSQLI----GQY----DPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPV 95 (411)
T ss_dssp CCHHHHHHHTSCCC----CTT----CHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCHHHHHHhhcccc----ccc----cHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEec
Confidence 36788877765431 111 11224677899999999999653 35556789999999999999999999999
Q ss_pred CchHH--HHHHHHhcCCeEEEecCC-----CHHHHHHHHHhhcccccc----------------------ccccccccc-
Q 013461 201 GVHWG--IQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKR----------------------SNSFGVLGR- 250 (442)
Q Consensus 201 ~~h~s--~~~~~~l~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~~----------------------a~~~g~~G~- 250 (442)
+.|.+ +...++..|.+++.++.+ |+++|++.+++....... .|+.-++-+
T Consensus 96 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De 175 (411)
T 3nnk_A 96 FGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDA 175 (411)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEEC
T ss_pred CCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEEC
Confidence 99977 777888899999988865 889999988753211100 222212111
Q ss_pred -CCCccccccCCCCCceeEEEEeccccc-cCCC-cEEEcCHHhHHHHHhhC-----------------------------
Q 013461 251 -SGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG-GFCTGSARVVDHQRLSS----------------------------- 298 (442)
Q Consensus 251 -~g~g~~~~~~v~~~~~diii~S~sK~l-g~~G-G~v~g~~~~i~~l~~~~----------------------------- 298 (442)
++.|. ..++....++|+++.|++|++ |..| |++++++++++.++...
T Consensus 176 a~~~~~-~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~ 254 (411)
T 3nnk_A 176 TASLGG-NPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMV 254 (411)
T ss_dssp TTTBTT-BCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHH
T ss_pred CcccCC-cccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHH
Confidence 11111 112333335799999999985 5444 89999999998887532
Q ss_pred -----CceeccCCCcHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHhhccCCCceeecCC---CCCEEEEEecCCC
Q 013461 299 -----SGYVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNP---ESPIVFLILEKST 368 (442)
Q Consensus 299 -----~~~~~s~s~~p~~aaaa~aal~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~---~~~i~~~~~~~~~ 368 (442)
......++.++..++++.++++.+.+ .++++++++++++++.+.|+++ |+++..+. ...++++.++...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 333 (411)
T 3nnk_A 255 MDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVIPQGI 333 (411)
T ss_dssp HHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEECCTTC
T ss_pred HhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEECCCCC
Confidence 00112234566666666678877654 3568889999999999999987 87765432 2567777764211
Q ss_pred CCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEe-cCCCCHHHHHHHHHHHHHHHHHH
Q 013461 369 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 369 ~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~-~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
+ ..++.+.++++.||.+.++..+.. +..+||++ +..+|++|+++++++|+++++++
T Consensus 334 -----~---~~~l~~~l~~~~gi~v~~g~~~~~-----~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 334 -----N---GDQARKLMLEDFGIEIGTSFGPLH-----GKVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp -----C---HHHHHHHHHHHHSEEEEECCGGGT-----TTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred -----C---HHHHHHHHHHhcCeEEeCccCCCC-----CCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 1 235677655555999987643211 24599998 77779999999999999998764
No 130
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.85 E-value=5.2e-20 Score=183.43 Aligned_cols=312 Identities=16% Similarity=0.168 Sum_probs=192.6
Q ss_pred eEEEe-ecCCCCCCCCChHHHHHHHHHH-HhcCCCCCccCccccCcHHHHHHHH----HHHhhhCCCcE-EEEcchHHHH
Q 013461 110 EVVNF-ASANYLGLIGHEKLLESCTSAL-EKYGVGSCGPRGFYGTIDVHLDCEA----RIAKFLGTPDS-ILYSYGLSTM 182 (442)
Q Consensus 110 ~~id~-~s~~~l~~~~~p~v~ea~~~~l-~~~g~~~~~~~~~~g~~~~~~~le~----~lA~~~g~e~~-i~~~sG~~a~ 182 (442)
+.|++ ++.||+ +|++++++.+++ ..|+.++.+++ +++....+.++++ .+++++|.+.. +++++|++++
T Consensus 26 ~~i~l~~~~~~~----~~~v~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~ 100 (417)
T 3n0l_A 26 EGLEMIASENFT----LPEVMEVMGSILTNKYAEGYPGKR-YYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQAN 100 (417)
T ss_dssp HSEECCTTCCCC----CHHHHHHHTBGGGGCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred cCeeeecccCCC----CHHHHHHHhhhhhccccccCCCcc-ccccchHHHHHHHHHHHHHHHHhCCCCcceEeccHHHHH
Confidence 45666 555664 799999999988 44555554433 3344455555554 88999998766 8889999999
Q ss_pred HhhhhhhccCCCEEEeCCCchHHHHH---HHHhc--CCeEEEecC-----CCHHHHHHHHHhhcccccc-----------
Q 013461 183 FSAIPCFCKKGDLIVADEGVHWGIQN---GLYLS--RSTVVYFKH-----NDMDSLRNTLERVTADNKR----------- 241 (442)
Q Consensus 183 ~~ai~a~~~~gd~Vi~~~~~h~s~~~---~~~l~--g~~v~~~~~-----~d~~~Le~~l~~~~~~~~~----------- 241 (442)
..++.+++++||.|+++.+.|.+... .+... +..++.++. .|+++|++.+++...+...
T Consensus 101 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~G~~~~ 180 (417)
T 3n0l_A 101 QGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAYARVID 180 (417)
T ss_dssp HHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECCSSCCSCCC
T ss_pred HHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECCcccCccCC
Confidence 99999999999999999999877543 22333 334555553 4789999988742211100
Q ss_pred ---------cccccccccC--CCccc--cccCCCCCceeEEEEecccccc-CCCcEEEcC-HHhHHHHHhhCCceeccCC
Q 013461 242 ---------SNSFGVLGRS--GRGLT--EHCGVPVDKIDIVTAAMGHALA-TEGGFCTGS-ARVVDHQRLSSSGYVFSAS 306 (442)
Q Consensus 242 ---------a~~~g~~G~~--g~g~~--~~~~v~~~~~diii~S~sK~lg-~~GG~v~g~-~~~i~~l~~~~~~~~~s~s 306 (442)
.|++-++-+. ..|.. ..........|++++|+||+++ ..|||++++ +++++.++........ ++
T Consensus 181 l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~-~~ 259 (417)
T 3n0l_A 181 FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQ-GG 259 (417)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTCSCSCEEEEESCHHHHHHHHHHHTTTTC-SS
T ss_pred HHHHHHHHHHcCCEEEEECccchhhhhcccCCCccccceEEEeeCccccCCCCeeEEEECCHHHHHHHhhhhCCccc-CC
Confidence 1221111111 11111 0001111246899999999994 458999998 7888877654333222 23
Q ss_pred CcHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHhhccCCCceeec-CCCCCEEEEEecCCCCCchhhHHHHHHHHH
Q 013461 307 LPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIAS-NPESPIVFLILEKSTGSMKNDLQLLEDIAD 383 (442)
Q Consensus 307 ~~p~~aaaa~aal~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~ 383 (442)
.++..++++.+++.... ...+++++++++++++.+.|.+. |+++.. ...++++++.+... +. + ..++.+
T Consensus 260 ~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~---~---~~~~~~ 331 (417)
T 3n0l_A 260 PLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDGTDNHLVLMSFLDR-EF---S---GKDADL 331 (417)
T ss_dssp CCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTS-SS---C---HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCceEEEEEcccC-CC---C---HHHHHH
Confidence 34555555555565432 23567888899999999999884 887754 23566777776432 10 1 123444
Q ss_pred HHHHhCCEEEeeccCcccccCC-CCCceEEEecC----CCCHHHHHHHHHHHHHHHHH
Q 013461 384 WALKEDGVFVVTSKRSMLDKCR-LPVGIRLFVSA----AHSEADLVKACESLKRISAV 436 (442)
Q Consensus 384 ~~L~~~GV~v~~~~~~~~~~~~-~~~~iRi~~~~----~~t~eei~~~i~~l~~~~~~ 436 (442)
.|+++||.+.+...+...... .+.++|++++. .+|++|+++++++|++++++
T Consensus 332 -~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 332 -ALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp -HHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred -HHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 566789999876544321111 13569998764 36799999999999998864
No 131
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.85 E-value=2.1e-19 Score=177.65 Aligned_cols=293 Identities=17% Similarity=0.161 Sum_probs=194.4
Q ss_pred CCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC---cEEEEcchHHHHHhhhhhhccCCCEEEeC
Q 013461 123 IGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP---DSILYSYGLSTMFSAIPCFCKKGDLIVAD 199 (442)
Q Consensus 123 ~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e---~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~ 199 (442)
..+|++++++.+++... . .....+...++++.+++++|.+ +++++++|++++..++.++.++||.|+++
T Consensus 29 ~~~~~v~~a~~~~~~~~---~-----~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~ 100 (393)
T 2huf_A 29 NAPQRVLDAMSRPILGH---L-----HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIG 100 (393)
T ss_dssp CCCHHHHHHTTSCCCCT---T-----SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCHHHHHHHHhhhccC---C-----CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEE
Confidence 35789988877655421 1 1123467889999999999965 35566788999999999999999999999
Q ss_pred CCchHHHH--HHHHhcCCeEEEecC-----CCHHHHHHHHHh-hcccccc---------------------ccccccccc
Q 013461 200 EGVHWGIQ--NGLYLSRSTVVYFKH-----NDMDSLRNTLER-VTADNKR---------------------SNSFGVLGR 250 (442)
Q Consensus 200 ~~~h~s~~--~~~~l~g~~v~~~~~-----~d~~~Le~~l~~-~~~~~~~---------------------a~~~g~~G~ 250 (442)
.+.|++.. ..++..|.+++.++. .|++++++.+++ .+..... .|+.-++-+
T Consensus 101 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D 180 (393)
T 2huf_A 101 HTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVD 180 (393)
T ss_dssp ESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEE
T ss_pred CCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEE
Confidence 98887742 234557888888873 578899988875 2221100 122111111
Q ss_pred --CCCccccccCCCCCceeEEEEeccccc-cCCC-cEEEcCHHhHHHHHhhC---Ccee-----------------c-cC
Q 013461 251 --SGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG-GFCTGSARVVDHQRLSS---SGYV-----------------F-SA 305 (442)
Q Consensus 251 --~g~g~~~~~~v~~~~~diii~S~sK~l-g~~G-G~v~g~~~~i~~l~~~~---~~~~-----------------~-s~ 305 (442)
.+.|. ...++...++|+++.|++|++ |..| ||+++++++++.++... .++. + .+
T Consensus 181 ~a~~~~~-~~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (393)
T 2huf_A 181 TVASLGG-APMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHH 259 (393)
T ss_dssp CTTTBTT-BCCCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSC
T ss_pred cccccCC-CCcchhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCC
Confidence 11111 112232235799999999986 4555 89999999999887541 1211 1 12
Q ss_pred CCcHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHhhccCCCceeecCC--CCC-EEEEEecCCCCCchhhHHHHHH
Q 013461 306 SLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNP--ESP-IVFLILEKSTGSMKNDLQLLED 380 (442)
Q Consensus 306 s~~p~~aaaa~aal~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~--~~~-i~~~~~~~~~~~~~~~~~~~~~ 380 (442)
+.+...++++.++++.+.+ .++.+++++++++++.+.|.++ |+++..+. .++ ++++.++... + ..+
T Consensus 260 ~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~ 330 (393)
T 2huf_A 260 TISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GFELYADPKDRLSTVTTIKVPQGV-----D---WLK 330 (393)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCTTEEEEECCTTC-----C---HHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCccccCCcEEEEEcCCCC-----C---HHH
Confidence 3455555656668877643 3567889999999999999987 88776432 234 7777764211 1 235
Q ss_pred HHHHHHHhCCEEEeeccCcccccCCCCCceEEEe-cCCCCHHHHHHHHHHHHHHHHHHh
Q 013461 381 IADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAVVL 438 (442)
Q Consensus 381 i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~-~~~~t~eei~~~i~~l~~~~~~~~ 438 (442)
+.+.+++++||.+.++..+. .+..+||++ +...+++|+++++++|+++++++.
T Consensus 331 ~~~~L~~~~gi~v~~g~~~~-----~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~ 384 (393)
T 2huf_A 331 AAQYAMKTYLVEISGGLGPT-----AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVK 384 (393)
T ss_dssp HHHHHHHHHCEECBCCCGGG-----TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCEEEecCcccc-----cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 67665555599998765432 134599999 545689999999999999987754
No 132
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.85 E-value=7.8e-21 Score=189.26 Aligned_cols=287 Identities=13% Similarity=0.083 Sum_probs=186.9
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh-CCC-------cE--EEEcch
Q 013461 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-GTP-------DS--ILYSYG 178 (442)
Q Consensus 109 ~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~-g~e-------~~--i~~~sG 178 (442)
.++|||++++|+++.++|.+.+++.++... +.. .|+......++++.+|+++ |.+ ++ +.+++|
T Consensus 41 ~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~---~~~----~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g 113 (409)
T 4eu1_A 41 KRKVNLSIGVYRDDADQPFVLECVKQATLG---TNM----DYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGG 113 (409)
T ss_dssp SSCEECCCSSCCCTTSCCCCCHHHHTCCCC---SCC----CCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHH
T ss_pred cCceeeeeeEEECCCCCEeecHHHHhcCcc---ccc----cCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccc
Confidence 468999999998988888888888777221 111 2222233468888888876 532 33 346777
Q ss_pred HHHHHh---hhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC-------CCHHHHHHHHHhhcccccc-------
Q 013461 179 LSTMFS---AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-------NDMDSLRNTLERVTADNKR------- 241 (442)
Q Consensus 179 ~~a~~~---ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~-------~d~~~Le~~l~~~~~~~~~------- 241 (442)
++++.. ++.+++++||.|+++.++|.++...++..|.+++.++. .|+++|++.+++..+....
T Consensus 114 ~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~ 193 (409)
T 4eu1_A 114 TGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAH 193 (409)
T ss_dssp HHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSC
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCC
Confidence 777765 45677899999999999999999999999999998875 1788999888643211110
Q ss_pred --------------------cccccc----------ccc---CCCccccccCCCCCceeEEEEeccccccCCC---cEE-
Q 013461 242 --------------------SNSFGV----------LGR---SGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFC- 284 (442)
Q Consensus 242 --------------------a~~~g~----------~G~---~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v- 284 (442)
.|++-+ ++. ++.+.....+. .+..|+++||||++|+.| ||+
T Consensus 194 NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~g~~G~riG~~~ 271 (409)
T 4eu1_A 194 NPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDM--VPNLIVAQSFSKNFGLYGHRCGALH 271 (409)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTT--SSCCEEEEECTTTSSCGGGCCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhh--CCcEEEEecCcccccCccCCceEEE
Confidence 112111 111 01112121222 234688999999999777 994
Q ss_pred --EcCHH----hHHHHHhhCCceeccCCCcHHHHHHHHHHHHH-------HhcChHHHHHHHHHHHHHHHhhccCCC---
Q 013461 285 --TGSAR----VVDHQRLSSSGYVFSASLPPYLASAAITAIDV-------LEENPDLITKLKKNTAILRTGLSDIHG--- 348 (442)
Q Consensus 285 --~g~~~----~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~-------l~~~~~~~~~l~~~~~~l~~~L~~~~g--- 348 (442)
+++++ +++.++....... .+.+++.++++.++++. .+..++++++++++++++.+.|+++ |
T Consensus 272 ~v~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 348 (409)
T 4eu1_A 272 ISTASAEEAKRLVSQLALLIRPMY--NNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKAC-GSVH 348 (409)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCS
T ss_pred EEeCCHHHHHHHHHHHHHHHhhhc--CCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC
Confidence 67787 6565544322222 23356666666666653 2233567889999999999999886 4
Q ss_pred -ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHH
Q 013461 349 -LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKAC 427 (442)
Q Consensus 349 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i 427 (442)
+++..+..+.+.++.+ + . +++..+++++||++.++ .||+++. +|++|+++++
T Consensus 349 ~~~~~~~~~~~~~~~~~--~------~-----~~~~~ll~~~gv~v~p~-------------~Ri~~~~-~~~~~i~~~~ 401 (409)
T 4eu1_A 349 DWSHIERQVGMMAYTGL--T------R-----EQVELLRSEYHIYMTLN-------------GRAAVSG-LNSTNVEYVS 401 (409)
T ss_dssp CCHHHHHSCSSEEECCC--C------H-----HHHHHHHHHHCEECCTT-------------CEEEGGG-CCTTTHHHHH
T ss_pred CcceecCCceEEEEeCC--C------H-----HHHHHHHHcCCEEEcCC-------------CEEEEEe-cCHhhHHHHH
Confidence 5554333444444322 1 1 34556676679988752 6888875 6778899999
Q ss_pred HHHHHHH
Q 013461 428 ESLKRIS 434 (442)
Q Consensus 428 ~~l~~~~ 434 (442)
++|++++
T Consensus 402 ~~l~~~l 408 (409)
T 4eu1_A 402 QAIHNVT 408 (409)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998865
No 133
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.85 E-value=2e-19 Score=179.04 Aligned_cols=270 Identities=12% Similarity=0.100 Sum_probs=186.1
Q ss_pred cHHHHHHHHHHHhhhCCCc--EE-EEcchHHHHHhhhhhhccCCCEEEeCCCchHH--HHHHHHhcCCeEEEecCC----
Q 013461 153 IDVHLDCEARIAKFLGTPD--SI-LYSYGLSTMFSAIPCFCKKGDLIVADEGVHWG--IQNGLYLSRSTVVYFKHN---- 223 (442)
Q Consensus 153 ~~~~~~le~~lA~~~g~e~--~i-~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s--~~~~~~l~g~~v~~~~~~---- 223 (442)
.+...++++.+++++|.+. .+ ++++|++++..++.++.++||.|++..+.|.+ +...++..|.+++.++.+
T Consensus 43 ~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 122 (416)
T 3isl_A 43 TGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTV 122 (416)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCC
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCCCC
Confidence 5678899999999999653 34 56778899999999999999999999999887 666788889999988865
Q ss_pred -CHHHHHHHHHhhcccccc----------------------ccccccccc--CCCccccccCCCCCceeEEEEeccccc-
Q 013461 224 -DMDSLRNTLERVTADNKR----------------------SNSFGVLGR--SGRGLTEHCGVPVDKIDIVTAAMGHAL- 277 (442)
Q Consensus 224 -d~~~Le~~l~~~~~~~~~----------------------a~~~g~~G~--~g~g~~~~~~v~~~~~diii~S~sK~l- 277 (442)
|+++|++.+++....... .|+.-++-+ .+.|.. .+++...++|+++.|++|++
T Consensus 123 ~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~-~~~~~~~~~d~~~~s~~K~l~ 201 (416)
T 3isl_A 123 FDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGC-EVKVDEWKIDAAIGGTQKCLS 201 (416)
T ss_dssp CCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTS-CCCTTTTTCSEEECCSSSTTC
T ss_pred CCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCC-CcchhhcCCCEEEecCccccC
Confidence 889999988742211100 222222211 111111 12232235799999999985
Q ss_pred cCCC-cEEEcCHHhHHHHHhhC-----------------------------------Cceec-cCCCcHHHHHHHHHHHH
Q 013461 278 ATEG-GFCTGSARVVDHQRLSS-----------------------------------SGYVF-SASLPPYLASAAITAID 320 (442)
Q Consensus 278 g~~G-G~v~g~~~~i~~l~~~~-----------------------------------~~~~~-s~s~~p~~aaaa~aal~ 320 (442)
|..| |++++++++++.+.... ....+ .++.+...++++.++++
T Consensus 202 g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 281 (416)
T 3isl_A 202 VPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVR 281 (416)
T ss_dssp CCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHH
Confidence 5444 89999999998876421 01111 23446666666667887
Q ss_pred HHhc--ChHHHHHHHHHHHHHHHhhccCCCceeecCCC---CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEee
Q 013461 321 VLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNPE---SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT 395 (442)
Q Consensus 321 ~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~ 395 (442)
.+++ .++++++++++++++.+.|.+. |+++..+.. +.++++.++... + ..++.+.++++.||.+.+
T Consensus 282 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~l~~~L~~~~gi~v~~ 352 (416)
T 3isl_A 282 LVLEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCVEIPGGI-----D---GESVRDMLLAQFGIEIAS 352 (416)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEEECCTTC-----C---HHHHHHHHHHHHCEECBC
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEEeCCCCC-----C---HHHHHHHHHHhCCEEEec
Confidence 7654 3578899999999999999986 887764422 567777774211 1 235777655545999987
Q ss_pred ccCcccccCCCCCceEEEecCCCCHHH-HHHHHHHHHHHHHHH
Q 013461 396 SKRSMLDKCRLPVGIRLFVSAAHSEAD-LVKACESLKRISAVV 437 (442)
Q Consensus 396 ~~~~~~~~~~~~~~iRi~~~~~~t~ee-i~~~i~~l~~~~~~~ 437 (442)
+..+. .+..+|++++...|++| +++++++|+++++++
T Consensus 353 g~~~~-----~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 353 SFGPL-----AGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp CCSTT-----TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCC-----CCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence 65321 13459999976667777 999999999988764
No 134
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.85 E-value=3.2e-19 Score=176.23 Aligned_cols=291 Identities=11% Similarity=0.033 Sum_probs=193.9
Q ss_pred CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHHHhhhhhhccCCCEEEeCCC
Q 013461 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCFCKKGDLIVADEG 201 (442)
Q Consensus 124 ~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~ 201 (442)
.+|.+++++.+++.. . + .+...+...++++.+|+++|.+ +++++++|++++..++.++.++||.|+++.+
T Consensus 20 ~~~~v~~a~~~~~~~----~---~-~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~ 91 (392)
T 2z9v_A 20 AYPEVLRGLGRTVLY----D---Y-DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLISPDDVVLNLAS 91 (392)
T ss_dssp CCHHHHHHTTSCCCC----T---T-SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEES
T ss_pred CCHHHHHHHhccccc----c---c-cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecC
Confidence 468888887765543 1 1 1234567789999999999964 6777788899999999999999999999999
Q ss_pred chHHHH--HHHHhcCCeEEEecC-----CCHHHHHHHHHhhcccccc------------------------ccccccccc
Q 013461 202 VHWGIQ--NGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKR------------------------SNSFGVLGR 250 (442)
Q Consensus 202 ~h~s~~--~~~~l~g~~v~~~~~-----~d~~~Le~~l~~~~~~~~~------------------------a~~~g~~G~ 250 (442)
.|++.. ..++..|.+++.++. .|+++|++.+++. ++.+. .|+.-++-+
T Consensus 92 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D 170 (392)
T 2z9v_A 92 GVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAH-PEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVD 170 (392)
T ss_dssp SHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHC-TTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEE
T ss_pred CcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcC-CCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEE
Confidence 888753 233446888888774 3788999888641 11111 122111111
Q ss_pred CCCccc-cccCCCCCceeEEEEecccccc-CCC-cEEEcCHHhHHHHHhhC------------------CceeccCCCcH
Q 013461 251 SGRGLT-EHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLSS------------------SGYVFSASLPP 309 (442)
Q Consensus 251 ~g~g~~-~~~~v~~~~~diii~S~sK~lg-~~G-G~v~g~~~~i~~l~~~~------------------~~~~~s~s~~p 309 (442)
.-.+.. ...++...++|++++|++|+++ ..| ||+++++++++.++... ....+.++.++
T Consensus 171 ~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (392)
T 2z9v_A 171 AVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSV 250 (392)
T ss_dssp CTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCH
T ss_pred cccccCCcccccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCH
Confidence 111100 0112222246899999999764 455 89999999988876421 01122344566
Q ss_pred HHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHhhccCCCceeecCC----CCCEEEEEecCCCCCchhhHHHHHHHHH
Q 013461 310 YLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNP----ESPIVFLILEKSTGSMKNDLQLLEDIAD 383 (442)
Q Consensus 310 ~~aaaa~aal~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~i~~ 383 (442)
..++++.++++.+.+ .++++++++++++++.+.|+++ |+++..++ .++++++.++... + ..++.+
T Consensus 251 ~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~l~~ 321 (392)
T 2z9v_A 251 SEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLSVWAASDSIASPTTTAVRTPDGV-----D---EKALRQ 321 (392)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCTTEEEEECCTTC-----C---HHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCccccCCceEEEECCCCC-----C---HHHHHH
Confidence 666666677877653 3567889999999999999887 87776422 4677788774211 1 235676
Q ss_pred HHHHhCCEEEeeccCcccccCCCCCceEEEecC-CCCHHHHHHHHHHHHHHHHHH
Q 013461 384 WALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA-AHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 384 ~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~-~~t~eei~~~i~~l~~~~~~~ 437 (442)
.++++.||.+.++..+. .+..+|+++.. .+|++|+++++++|+++++++
T Consensus 322 ~L~~~~gi~v~~g~~~~-----~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 322 AARARYGVVFSSGRGET-----LGKLTRIGHMGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp HHHHHHCEECEECCGGG-----TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCEEEecCCCCC-----CCCeEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence 54443499998875421 13569999644 789999999999999988764
No 135
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.84 E-value=6.3e-20 Score=182.16 Aligned_cols=267 Identities=12% Similarity=0.088 Sum_probs=176.7
Q ss_pred CcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHH----HhcCCeEEEecCCCHHH
Q 013461 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDS 227 (442)
Q Consensus 152 ~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~----~l~g~~v~~~~~~d~~~ 227 (442)
..+...++++++++++|.++++++++|++|+..++.++.++||.|+++.+.|.++...+ ...|.+++.++.+|+++
T Consensus 62 ~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~ 141 (398)
T 2rfv_A 62 GNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEE 141 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHH
T ss_pred CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHH
Confidence 56888999999999999999999999999999999999999999999999999988776 77899999999989999
Q ss_pred HHHHHHhhcccccc---------------------ccccccccc--CCCccccccCCCCCceeEEEEeccccccCC----
Q 013461 228 LRNTLERVTADNKR---------------------SNSFGVLGR--SGRGLTEHCGVPVDKIDIVTAAMGHALATE---- 280 (442)
Q Consensus 228 Le~~l~~~~~~~~~---------------------a~~~g~~G~--~g~g~~~~~~v~~~~~diii~S~sK~lg~~---- 280 (442)
+++.+++.+.-... .|+.-++-+ .+.+.... .. ..++|+++.|++|+++++
T Consensus 142 l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~-~~-~~~~di~~~s~sK~~~~~g~~~ 219 (398)
T 2rfv_A 142 IRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ-PL-QLGADIVVHSVTKYINGHGDVI 219 (398)
T ss_dssp HHHHCCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-GG-GGTCSEEEEETTTTTTCSSCCC
T ss_pred HHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-ch-hhCCcEEEEeCcccccCCCCce
Confidence 98887642211000 122111111 01111100 00 124689999999999643
Q ss_pred CcEEEcCHHhHH-HHHhhCCceec-cCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccC------------
Q 013461 281 GGFCTGSARVVD-HQRLSSSGYVF-SASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI------------ 346 (442)
Q Consensus 281 GG~v~g~~~~i~-~l~~~~~~~~~-s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~------------ 346 (442)
|||+++++++++ .++... ..+ +.+.+|+.++++.++++.+. ...++..++.+.+.+.|.+.
T Consensus 220 ~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~ 294 (398)
T 2rfv_A 220 GGIIVGKQEFIDQARFVGL--KDITGGCMSPFNAWLTLRGVKTLG---IRMERHCENALKIARFLEGHPSITRVYYPGLS 294 (398)
T ss_dssp CEEEEECHHHHHHHHHTHH--HHTTCCCCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHTCTTEEEEECTTST
T ss_pred EEEEEECHHHHHHHHHHHH--HhCCCCCCCHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCC
Confidence 599999999887 554321 223 34567888888777776542 34455566666666666543
Q ss_pred --CCceeecC---CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcc------c------c------c
Q 013461 347 --HGLSIASN---PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM------L------D------K 403 (442)
Q Consensus 347 --~g~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~------~------~------~ 403 (442)
+++++..+ ..++++++.++. ......++.++ +...|+.+.++..+. . + .
T Consensus 295 ~~p~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~l~~~-~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~ 366 (398)
T 2rfv_A 295 SHPQYELGQRQMSLPGGIISFEIAG-------GLEAGRRMINS-VELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKA 366 (398)
T ss_dssp TSTTHHHHHHHCSSCCSEEEEEETT-------HHHHHHHHHTT-CSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHT
T ss_pred CCccHHHHHhhCCCCceEEEEEEcC-------CHHHHHHHHHh-CCcceeccCCCCcceeeecccccccccCCHHHHHhc
Confidence 23333221 357888888742 11123334432 333477776653211 0 0 0
Q ss_pred CCCCCceEEEecCCCCHHHHHHHHHHHHHH
Q 013461 404 CRLPVGIRLFVSAAHSEADLVKACESLKRI 433 (442)
Q Consensus 404 ~~~~~~iRi~~~~~~t~eei~~~i~~l~~~ 433 (442)
+..+..+|++++..++++++++++++|+++
T Consensus 367 g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 367 GITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp TCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 111356999999999999999999998764
No 136
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.84 E-value=4.6e-19 Score=174.27 Aligned_cols=288 Identities=15% Similarity=0.126 Sum_probs=196.0
Q ss_pred CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCc----EEEEcchHHHHHhhhhhhccCCCEEEeC
Q 013461 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD----SILYSYGLSTMFSAIPCFCKKGDLIVAD 199 (442)
Q Consensus 124 ~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~----~i~~~sG~~a~~~ai~a~~~~gd~Vi~~ 199 (442)
.+|++++++.+++..+ ..+...+...++++++++++|.+. ++++++|++++. ++.+++++||.|++.
T Consensus 13 ~~~~v~~a~~~~~~~~--------~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~ 83 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGF--------TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVV 83 (384)
T ss_dssp CCHHHHHHTTCCSCCT--------TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEE
T ss_pred CCHHHHHHhhcccccc--------ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEe
Confidence 4688888776654321 112235778899999999999654 788888999999 999999999999988
Q ss_pred CCchHH--HHHHHHhcCCeEEEecCC-----CHHHHHHHHHhhcccccc----------------------ccccccccc
Q 013461 200 EGVHWG--IQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKR----------------------SNSFGVLGR 250 (442)
Q Consensus 200 ~~~h~s--~~~~~~l~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~~----------------------a~~~g~~G~ 250 (442)
++.|.+ +...++..|.+++.++.+ |++++++.+++....... .|+.-++-+
T Consensus 84 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D 163 (384)
T 3zrp_A 84 SNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVD 163 (384)
T ss_dssp CSSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEE
T ss_pred cCCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEE
Confidence 888865 445557789999988764 789999988762211100 222222211
Q ss_pred C--CCccccccCCCCCceeEEEEecccccc-CCC-cEEEcCHHhHHHH-HhhC------------C--------ceeccC
Q 013461 251 S--GRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQ-RLSS------------S--------GYVFSA 305 (442)
Q Consensus 251 ~--g~g~~~~~~v~~~~~diii~S~sK~lg-~~G-G~v~g~~~~i~~l-~~~~------------~--------~~~~s~ 305 (442)
. +.+. ...++...++|+++.|++|+++ ..| |++++++++++.+ +... . .....+
T Consensus 164 ~a~~~~~-~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 242 (384)
T 3zrp_A 164 GVSSVGA-EEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFA 242 (384)
T ss_dssp CTTTTTT-SCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSS
T ss_pred CcccccC-ccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCC
Confidence 1 1111 1123333357999999999995 444 8999999998876 1100 0 001112
Q ss_pred CCcHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHhhccCCCceeecCC----CCCEEEEEecCCCCCchhhHHHHH
Q 013461 306 SLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNP----ESPIVFLILEKSTGSMKNDLQLLE 379 (442)
Q Consensus 306 s~~p~~aaaa~aal~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~ 379 (442)
+.++..++++.++++.+++ .++++++++++++++.+.|+++ |+++..+. .+.++++.++.. + ..
T Consensus 243 ~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~------~---~~ 312 (384)
T 3zrp_A 243 TPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPESYSNTVTGVILKVA------D---PQ 312 (384)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGGBCSSEEEEECSSS------C---HH
T ss_pred CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccccCccEEEEECCCC------C---HH
Confidence 4566666666678877653 3568889999999999999988 88776543 355667776431 1 23
Q ss_pred HHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHh
Q 013461 380 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 438 (442)
Q Consensus 380 ~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~ 438 (442)
++.+.+ .++||.+.++..+.. ..+|++++..+|++|+++++++|+++++++.
T Consensus 313 ~~~~~l-~~~gi~v~~g~~~~~------~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 313 KVLAGT-VNEGVEFAPGVHPAF------KYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp HHHHHH-HTTTCCCEECCCTTC------CEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHCCEEEecCCCCCc------CEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 577754 455999987653211 4599999999999999999999999987653
No 137
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.84 E-value=4.2e-19 Score=175.30 Aligned_cols=294 Identities=16% Similarity=0.132 Sum_probs=194.6
Q ss_pred ChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhh-ccCCCEEEeCCCch
Q 013461 125 HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVH 203 (442)
Q Consensus 125 ~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~-~~~gd~Vi~~~~~h 203 (442)
.|++++++.+++++ +. ..++..+...++++++|+++|.++.+++++|++|+..++.++ .++||.|+++.+.|
T Consensus 16 ~~~~~~a~~~~l~~-~~------~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~ 88 (388)
T 1b9h_A 16 DDAERNGLVRALEQ-GQ------WWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTF 88 (388)
T ss_dssp CHHHHHHHHHHHHT-SC------CBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSC
T ss_pred CHHHHHHHHHHHHc-CC------eeecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCcc
Confidence 38999999999986 21 113344677899999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHhcCCeEEEecCC------CHHHHHHHHHhhcccccc------------------ccccccccc--CCCcccc
Q 013461 204 WGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKR------------------SNSFGVLGR--SGRGLTE 257 (442)
Q Consensus 204 ~s~~~~~~l~g~~v~~~~~~------d~~~Le~~l~~~~~~~~~------------------a~~~g~~G~--~g~g~~~ 257 (442)
.++...++..|++++.++.+ |+++|++.++..+..... .|+.-++-+ .+.|..
T Consensus 89 ~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~- 167 (388)
T 1b9h_A 89 ISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIMPVHMAGLMADMDALAKISADTGVPLLQDAAHAHGAR- 167 (388)
T ss_dssp THHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCE-
T ss_pred HHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEEEeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCc-
Confidence 99999999999999988753 677888776532211000 111111111 011110
Q ss_pred ccCCCCCc-eeEEEEecc--ccc-cCCCcEEEcCHH-h--HHHHHhhCC--------ce-----eccCCCcHHHHHHHHH
Q 013461 258 HCGVPVDK-IDIVTAAMG--HAL-ATEGGFCTGSAR-V--VDHQRLSSS--------GY-----VFSASLPPYLASAAIT 317 (442)
Q Consensus 258 ~~~v~~~~-~diii~S~s--K~l-g~~GG~v~g~~~-~--i~~l~~~~~--------~~-----~~s~s~~p~~aaaa~a 317 (442)
..+..... -|+.+.||| |++ |..||+++++++ + ++.++.... .| .++..++++.++++.+
T Consensus 168 ~~~~~~~~~~~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~ 247 (388)
T 1b9h_A 168 WQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRA 247 (388)
T ss_dssp ETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHH
T ss_pred cCCeecccccceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHH
Confidence 00000001 157788887 767 445799998876 5 565542211 01 1122357777666655
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecC------CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCE
Q 013461 318 AIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASN------PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGV 391 (442)
Q Consensus 318 al~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV 391 (442)
+++.+ ++..++++++.+++.+.|++++++.+..+ ..++++++.++.. ......++.+. |.++||
T Consensus 248 ~~~~l---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~-L~~~gI 317 (388)
T 1b9h_A 248 QLARL---DEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGL------TEERRNALVDR-LVEAGL 317 (388)
T ss_dssp HHTTH---HHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTC------CHHHHHHHHHH-HHHTTC
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCc------CcccHHHHHHH-HHHCCC
Confidence 55544 34677888899999999998878877542 2356888877421 01123467775 445699
Q ss_pred EEeeccCccccc------C-----------CCC-------CceEEEecCCC-CHHHHHHHHHHHHHHHHH
Q 013461 392 FVVTSKRSMLDK------C-----------RLP-------VGIRLFVSAAH-SEADLVKACESLKRISAV 436 (442)
Q Consensus 392 ~v~~~~~~~~~~------~-----------~~~-------~~iRi~~~~~~-t~eei~~~i~~l~~~~~~ 436 (442)
.++++..+.... . .+| ..|||+++..+ |++||++++++|++++++
T Consensus 318 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 318 PAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp CEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 998765432100 0 011 13999999999 999999999999988754
No 138
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.84 E-value=2.5e-19 Score=178.92 Aligned_cols=298 Identities=14% Similarity=0.198 Sum_probs=196.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhh-ccCCCEEEeCCCch
Q 013461 125 HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVH 203 (442)
Q Consensus 125 ~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~-~~~gd~Vi~~~~~h 203 (442)
+|++++++.+++++...+..+ ...|..++..++++.+++++|.++++++++|++|+..++.++ +++||.|+++.+.|
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~--~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~ 92 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISG--YWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTW 92 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTS--BCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSC
T ss_pred CHHHHHHHHHHHhcCCccccC--cccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCcc
Confidence 689999999999874332112 245677889999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHhcCCeEEEecCC------CHHHHHHHHHhhcccccc------------------cccccccccC--CCcc-c
Q 013461 204 WGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKR------------------SNSFGVLGRS--GRGL-T 256 (442)
Q Consensus 204 ~s~~~~~~l~g~~v~~~~~~------d~~~Le~~l~~~~~~~~~------------------a~~~g~~G~~--g~g~-~ 256 (442)
.++..++...|++++.++.+ |+++|++.+++.+..... .|+.-++-+. ..|. .
T Consensus 93 ~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~ 172 (418)
T 2c81_A 93 IATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPVHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVW 172 (418)
T ss_dssp THHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECCBCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEE
T ss_pred HhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEEeCCcCCcccHHHHHHHHHHCCCEEEEECcccccCcc
Confidence 99999999999999988864 567776665432211100 1111111110 1111 0
Q ss_pred --cccCCCCCceeEEEEec--cccccC-CCcEEEc-CHHhHHHHHhhC-Cc-------------ee----------ccCC
Q 013461 257 --EHCGVPVDKIDIVTAAM--GHALAT-EGGFCTG-SARVVDHQRLSS-SG-------------YV----------FSAS 306 (442)
Q Consensus 257 --~~~~v~~~~~diii~S~--sK~lg~-~GG~v~g-~~~~i~~l~~~~-~~-------------~~----------~s~s 306 (442)
...+. -.|+.+.|| +|++|. .|||+++ ++++++.++... .+ +. +...
T Consensus 173 ~~~~~~~---~~~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 249 (418)
T 2c81_A 173 NNQRAGT---IGDIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYC 249 (418)
T ss_dssp TTEETTS---SSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCC
T ss_pred CCEeccc---ccceEEEeccCCcccCCCCeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCC
Confidence 01111 125777778 999976 5689888 478777665321 11 11 1112
Q ss_pred CcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCC------CEEEEEecCC--CCCchhhHHHH
Q 013461 307 LPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPES------PIVFLILEKS--TGSMKNDLQLL 378 (442)
Q Consensus 307 ~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~------~i~~~~~~~~--~~~~~~~~~~~ 378 (442)
++++.++.+...++.+ ++..++.+++.+++.+.|.+++|+++...+.+ +++.+.++.. .+ .+ .
T Consensus 250 ~~~~~aa~~~~~l~~~---~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~ 320 (418)
T 2c81_A 250 LSEFQSAILLDQLQEL---DDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGG---LN---A 320 (418)
T ss_dssp CCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTT---CC---H
T ss_pred cCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccccc---cC---H
Confidence 4566555444444333 45677788889999999988878887633332 2454666420 00 01 2
Q ss_pred HHHHHHHHHhC-CEE---EeeccCccccc------------------------CCCC-------CceEEEecCCC-CHHH
Q 013461 379 EDIADWALKED-GVF---VVTSKRSMLDK------------------------CRLP-------VGIRLFVSAAH-SEAD 422 (442)
Q Consensus 379 ~~i~~~~L~~~-GV~---v~~~~~~~~~~------------------------~~~~-------~~iRi~~~~~~-t~ee 422 (442)
.++.+. |.++ ||. +.++..+.... ..+| ..||++++..+ |++|
T Consensus 321 ~~l~~~-L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~ed 399 (418)
T 2c81_A 321 DQFCEI-LREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSH 399 (418)
T ss_dssp HHHHHH-HHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHH
T ss_pred HHHHHH-HHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHH
Confidence 356765 4455 999 88765332100 1122 25999999999 9999
Q ss_pred HHHHHHHHHHHHHHH
Q 013461 423 LVKACESLKRISAVV 437 (442)
Q Consensus 423 i~~~i~~l~~~~~~~ 437 (442)
+++++++|+++++++
T Consensus 400 i~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 400 LSLLVDAVAELARKF 414 (418)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987654
No 139
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.84 E-value=2.1e-19 Score=177.28 Aligned_cols=294 Identities=13% Similarity=0.097 Sum_probs=196.6
Q ss_pred CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC---cEEEEcchHHHHHhhhhhhccCCCEEEeCC
Q 013461 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP---DSILYSYGLSTMFSAIPCFCKKGDLIVADE 200 (442)
Q Consensus 124 ~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e---~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~ 200 (442)
.+|++++++.+++.. .. .....+...++++.+++++|.+ .++++++|++++..++.++.++||.|++..
T Consensus 34 ~~~~v~~a~~~~~~~----~~----~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~ 105 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG----HM----QKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGT 105 (393)
T ss_dssp CCHHHHHHTTCCCCC----TT----SHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEE
T ss_pred CCHHHHHHhcccccC----cc----cHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEe
Confidence 468888877653211 11 1122467789999999999964 356778899999999999999999999887
Q ss_pred CchHH--HHHHHHhcCCeEEEecC-----CCHHHHHHHHHhhcccccc----------------------cccccccccC
Q 013461 201 GVHWG--IQNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKR----------------------SNSFGVLGRS 251 (442)
Q Consensus 201 ~~h~s--~~~~~~l~g~~v~~~~~-----~d~~~Le~~l~~~~~~~~~----------------------a~~~g~~G~~ 251 (442)
+.|++ +...+...|.+++.++. .|+++|++.+++....... .|+.-++-+.
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De 185 (393)
T 3kgw_A 106 NGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDS 185 (393)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEEC
T ss_pred CCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEEC
Confidence 77653 35667788999888773 4789999988762211100 2222222111
Q ss_pred --CCccccccCCCCCceeEEEEeccccc-cCCC-cEEEcCHHhHHHHHhhCCce---------------------eccCC
Q 013461 252 --GRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG-GFCTGSARVVDHQRLSSSGY---------------------VFSAS 306 (442)
Q Consensus 252 --g~g~~~~~~v~~~~~diii~S~sK~l-g~~G-G~v~g~~~~i~~l~~~~~~~---------------------~~s~s 306 (442)
+.|. ..+++...++|+++.|++|++ |..| |++++++++++.+....... ....+
T Consensus 186 ~~~~g~-~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (393)
T 3kgw_A 186 VASLGG-VPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHT 264 (393)
T ss_dssp TTTTTT-SCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCC
T ss_pred CccccC-cccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCC
Confidence 1111 122333345799999999988 4444 89999999999886532111 12234
Q ss_pred CcHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHhhccCCCceeecCC----CCCEEEEEecCCCCCchhhHHHHHH
Q 013461 307 LPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNP----ESPIVFLILEKSTGSMKNDLQLLED 380 (442)
Q Consensus 307 ~~p~~aaaa~aal~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~ 380 (442)
.++..++++.++++.+++ .++++++++++++++.+.|+++ |+++..+. ...++++.+.... + ..+
T Consensus 265 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~ 335 (393)
T 3kgw_A 265 TPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKFFVKDPEIRLPTITTVTVPAGY-----N---WRD 335 (393)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCSSEEEEECCTTB-----C---HHH
T ss_pred CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcCCeEEEEeCCCCC-----C---HHH
Confidence 566777777788886654 2668899999999999999987 87765321 1345566663211 1 235
Q ss_pred HHHHHHHhCCEEEeeccCcccccCCCCCceEEEe-cCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013461 381 IADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAVVLRD 440 (442)
Q Consensus 381 i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~-~~~~t~eei~~~i~~l~~~~~~~~~~ 440 (442)
+.+.++++.||.+.++..+.. +..+|+++ +...|++|+++++++|+++++++.++
T Consensus 336 ~~~~l~~~~gi~v~~g~~~~~-----~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~~ 391 (393)
T 3kgw_A 336 IVSYVLDHFSIEISGGLGPTE-----ERVLRIGLLGYNATTENVDRVAEALREALQHCPKN 391 (393)
T ss_dssp HHHHHHHHHCEECBCCCGGGT-----TTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCBC
T ss_pred HHHHHHHhCCEEEeCCcccCC-----CCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 777655544999998754321 34599998 66679999999999999999876544
No 140
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.84 E-value=4e-19 Score=175.63 Aligned_cols=302 Identities=15% Similarity=0.127 Sum_probs=199.1
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhh
Q 013461 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF 189 (442)
Q Consensus 110 ~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~ 189 (442)
++|+|++.+ -++++++++.+++++... +..+...++++.+|+++|.++++++++|++|+..++.++
T Consensus 9 ~~i~~~~p~-----~~~~~~~a~~~~~~~~~~---------~~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~ 74 (393)
T 1mdo_A 9 DFLPFSRPA-----MGAEELAAVKTVLDSGWI---------TTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMAL 74 (393)
T ss_dssp CCBCSCCCC-----CCHHHHHHHHHHHHHTCC---------SSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHT
T ss_pred cccccCCCC-----CCHHHHHHHHHHHhcCCc---------CCChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHc
Confidence 356666522 247889999999877311 123667899999999999999999999999999999999
Q ss_pred -ccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC------CCHHHHHHHHHhhcccccc------------------ccc
Q 013461 190 -CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH------NDMDSLRNTLERVTADNKR------------------SNS 244 (442)
Q Consensus 190 -~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~------~d~~~Le~~l~~~~~~~~~------------------a~~ 244 (442)
+++||.|+++.+.|.++...++..|.+++.++. .|+++|++.+++.+..... .++
T Consensus 75 ~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~G~~~~~~~i~~l~~~~~ 154 (393)
T 1mdo_A 75 GIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYG 154 (393)
T ss_dssp TCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHT
T ss_pred CCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCCCceEEEEeCCCCCcCCHHHHHHHHHHcC
Confidence 899999999999999999999999999988874 3677888777542211100 122
Q ss_pred ccccccC--CCccccccCCCCCc-eeEEEEecc--cccc-CCCcEEEcC-HHhHHHHHhhCC-c--------------ee
Q 013461 245 FGVLGRS--GRGLTEHCGVPVDK-IDIVTAAMG--HALA-TEGGFCTGS-ARVVDHQRLSSS-G--------------YV 302 (442)
Q Consensus 245 ~g~~G~~--g~g~~~~~~v~~~~-~diii~S~s--K~lg-~~GG~v~g~-~~~i~~l~~~~~-~--------------~~ 302 (442)
.-++-+. +.|... .+ .+-. .|+++.|++ |+++ ..||+++++ +++++.++.... + +.
T Consensus 155 ~~li~D~a~~~g~~~-~~-~~~~~~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 232 (393)
T 1mdo_A 155 IPVIEDAAHATGTSY-KG-RHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQ 232 (393)
T ss_dssp CCBCEECTTCTTCEE-TT-EETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------C
T ss_pred CeEEEECccccCCeE-CC-eecCCCCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhccccccc
Confidence 1111111 111110 00 1112 689999999 8885 456898886 788887754321 1 11
Q ss_pred cc-------CCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecC------CCCCEEEEEecCCCC
Q 013461 303 FS-------ASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASN------PESPIVFLILEKSTG 369 (442)
Q Consensus 303 ~s-------~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~------~~~~i~~~~~~~~~~ 369 (442)
+. ..++++.++++.+.++.+ ++..++.+++.+++.+.|.++ ++++... ..+.++++.++...
T Consensus 233 ~~~~~~g~~~~~~~~~~a~~~~~l~~~---~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~- 307 (393)
T 1mdo_A 233 AEVLAPGYKYNLPDLNAAIALAQLQKL---DALNARRAAIAAQYHQAMADL-PFQPLSLPSWEHIHAWHLFIIRVDEAR- 307 (393)
T ss_dssp CEESSCCCBCCCCHHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHHHTS-SCEECCCCSSCEECCCSCEEEECCHHH-
T ss_pred ccccccCccCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcC-CcccccCCCCCCCceeEEEEEEecccc-
Confidence 11 235777777766666554 346677778899999999887 4665421 23456777774100
Q ss_pred CchhhHHHHHHHHHHHHHhCCEEEeeccCcccc---------cCCCC-------CceEEEecCCCCHHHHHHHHHHHHHH
Q 013461 370 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---------KCRLP-------VGIRLFVSAAHSEADLVKACESLKRI 433 (442)
Q Consensus 370 ~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~---------~~~~~-------~~iRi~~~~~~t~eei~~~i~~l~~~ 433 (442)
......++.+. |.++||.+.++..+... ....| ..+|++++..+|++|+++++++|+++
T Consensus 308 ----~~~~~~~l~~~-l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~ 382 (393)
T 1mdo_A 308 ----CGITRDALMAS-LKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQI 382 (393)
T ss_dssp ----HSSCHHHHHHH-HHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ----cccCHHHHHHH-HHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 00012356765 45569999876543100 00111 24999999999999999999999987
Q ss_pred HHHH
Q 013461 434 SAVV 437 (442)
Q Consensus 434 ~~~~ 437 (442)
++..
T Consensus 383 ~~~~ 386 (393)
T 1mdo_A 383 AGQG 386 (393)
T ss_dssp HC--
T ss_pred HhcC
Confidence 6543
No 141
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.84 E-value=1.5e-19 Score=179.42 Aligned_cols=296 Identities=14% Similarity=0.162 Sum_probs=198.9
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhh
Q 013461 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPC 188 (442)
Q Consensus 109 ~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a 188 (442)
+++|||+++.. .+ .|++++++.+++++. .|+..+...++++++|+++|.++++++++|++|+..++.+
T Consensus 30 ~~~id~~~~~~-~~--~~~v~~a~~~~~~~~---------~y~~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~ 97 (399)
T 2oga_A 30 VPFLDLKAAYE-EL--RAETDAAIARVLDSG---------RYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRG 97 (399)
T ss_dssp BCSCCHHHHHH-HT--HHHHHHHHHHHHHHT---------CCSSSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHH
T ss_pred CcccccCcCCC-CC--CHHHHHHHHHHHhcC---------CCCCchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHH
Confidence 57889876532 12 289999999998751 1223366789999999999999999999999999999999
Q ss_pred h-ccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC------CCHHHHHHHHHhhcccccc--------------------
Q 013461 189 F-CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH------NDMDSLRNTLERVTADNKR-------------------- 241 (442)
Q Consensus 189 ~-~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~------~d~~~Le~~l~~~~~~~~~-------------------- 241 (442)
+ +++||.|+++.+.|.++...++..|.+++.++. .|++++++.+++.+.....
T Consensus 98 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~n~tG~~~~l~~i~~l~~~~ 177 (399)
T 2oga_A 98 LGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRH 177 (399)
T ss_dssp TTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHH
T ss_pred hCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEEEeCCcCCccCHHHHHHHHHHc
Confidence 9 899999999999999999999999999988864 2677887776542211000
Q ss_pred --------cccccccccCCCccccccCCCCCceeEEEEec--cccccC--CCcEEEcC-HHhHHHHHhhC-Cce------
Q 013461 242 --------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAM--GHALAT--EGGFCTGS-ARVVDHQRLSS-SGY------ 301 (442)
Q Consensus 242 --------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~--sK~lg~--~GG~v~g~-~~~i~~l~~~~-~~~------ 301 (442)
++++|... ++. .++ .-.|+++.|+ +|.+|. .||+++++ +++++.++... .+.
T Consensus 178 ~~~li~Dea~~~g~~~-~~~----~~~---~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~ 249 (399)
T 2oga_A 178 GLHIVEDAAQAHGARY-RGR----RIG---AGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSH 249 (399)
T ss_dssp TCEECEECTTCTTCEE-TTE----ETT---CTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCSSTTCC
T ss_pred CCEEEEECcccccCcc-CCe----ecc---cccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCccccccc
Confidence 22222111 111 111 1137999999 799986 46888875 88877665421 111
Q ss_pred ---eccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCC--CCEE-EEEecCCCCCchhhH
Q 013461 302 ---VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE--SPIV-FLILEKSTGSMKNDL 375 (442)
Q Consensus 302 ---~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~--~~i~-~~~~~~~~~~~~~~~ 375 (442)
.+...++++.++++.++++.++ +..++.+++.+++.+.|.+++|+++...+. .+++ .+.+... +
T Consensus 250 ~~~g~~~~~~~~~~a~~~~~l~~~~---~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~------~- 319 (399)
T 2oga_A 250 ETKGTNSRLDEMQAAVLRIRLAHLD---SWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTE------R- 319 (399)
T ss_dssp CSCCCBCCCCHHHHHHHHHHHHTHH---HHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEECS------S-
T ss_pred cccccCCCcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEECC------C-
Confidence 1223457888888888887664 356677788899999998877776643222 1221 1222111 1
Q ss_pred HHHHHHHHHHHHhCCEEEeeccCcccc-----------cCCCC-------CceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 376 QLLEDIADWALKEDGVFVVTSKRSMLD-----------KCRLP-------VGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 376 ~~~~~i~~~~L~~~GV~v~~~~~~~~~-----------~~~~~-------~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
..++.+. |.++||.+.+....... ...+| ..+||+++..+|++|+++++++|+++++++
T Consensus 320 --~~~l~~~-L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 320 --RDELRSH-LDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp --HHHHHHH-HHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred --HHHHHHH-HHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2356665 55579999864321100 00011 349999999999999999999999987653
No 142
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.84 E-value=1.4e-20 Score=186.35 Aligned_cols=291 Identities=16% Similarity=0.136 Sum_probs=185.2
Q ss_pred CCeeEEEeecCCCCCCC----CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh---C-----CCcEEE
Q 013461 107 SGKEVVNFASANYLGLI----GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL---G-----TPDSIL 174 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~----~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~---g-----~e~~i~ 174 (442)
.|+++|||+++.|++.. .+|.+++++.+++++... ..|+......++++.+|+++ + .+++++
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~------~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~ 97 (396)
T 2q7w_A 24 ERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETT------KNYLGIDGIPEFGRCTQELLFGKGSALINDKRART 97 (396)
T ss_dssp ----CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC------CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred CCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccc------cCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEE
Confidence 35789999999876542 468999999988875311 11223334578888888887 2 356666
Q ss_pred --EcchHHHHHhhhhhh--ccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC---C----CHHHHHHHHHhhcccccc--
Q 013461 175 --YSYGLSTMFSAIPCF--CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---N----DMDSLRNTLERVTADNKR-- 241 (442)
Q Consensus 175 --~~sG~~a~~~ai~a~--~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~---~----d~~~Le~~l~~~~~~~~~-- 241 (442)
+++|++++..++.++ .++||.|+++.++|..+...++..|.+++.++. + |++++++.+++..+....
T Consensus 98 ~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~ 177 (396)
T 2q7w_A 98 AQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLF 177 (396)
T ss_dssp EEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEE
T ss_pred EecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEE
Confidence 888899999988766 369999999999999999999999999988887 4 788998888653211111
Q ss_pred -------------------------ccccccc-ccC----CCc------cccccCCCCCceeEEEEeccccccCCC---c
Q 013461 242 -------------------------SNSFGVL-GRS----GRG------LTEHCGVPVDKIDIVTAAMGHALATEG---G 282 (442)
Q Consensus 242 -------------------------a~~~g~~-G~~----g~g------~~~~~~v~~~~~diii~S~sK~lg~~G---G 282 (442)
.|+.-++ .+. +.+ ....+... .+.+++++||||++|+.| |
T Consensus 178 ~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~riG 256 (396)
T 2q7w_A 178 HGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAM-HKELIVASSYSXNFGLYNERVG 256 (396)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHH-CSCEEEEEECTTTTTCGGGCCE
T ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhc-CCcEEEEEeccccccccccccc
Confidence 1221111 000 000 01111111 245788999999998766 9
Q ss_pred EEEc---CH----HhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHH-------hcChHHHHHHHHHHHHHHHhhccCC-
Q 013461 283 FCTG---SA----RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-------EENPDLITKLKKNTAILRTGLSDIH- 347 (442)
Q Consensus 283 ~v~g---~~----~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l-------~~~~~~~~~l~~~~~~l~~~L~~~~- 347 (442)
|+++ ++ ++++.+.... ...++ +.+++.++++.++++.. +..++++++++++++++.+.|+++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 334 (396)
T 2q7w_A 257 ACTLVAADSETVDRAFSQMKAAI-RANYS-NPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA 334 (396)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHH-HTTTS-SCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEcCCHHHHHHHHHHHHHHH-hhccC-CCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9886 55 3555444311 11222 23666676677776543 2224466788889999999998862
Q ss_pred --CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHH
Q 013461 348 --GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVK 425 (442)
Q Consensus 348 --g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~ 425 (442)
++++..+..+.++++.+. . +.+..+++++||.+.+ ++||+++. .|++|+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~--------~-----~~~~~~l~~~gv~v~~-------------~~Ris~~~-~~~e~i~~ 387 (396)
T 2q7w_A 335 NRDFSFIIKQNGMFSFSGLT--------K-----EQVLRLREEFGVYAVA-------------SGRVNVAG-MTPDNMAP 387 (396)
T ss_dssp CSCCTHHHHCCSSEEECCCC--------H-----HHHHHHHHHHCEECCT-------------TCEEEGGG-CCTTTHHH
T ss_pred CCCcceecCCCceEEEecCC--------H-----HHHHHHHHhcCeeecC-------------CceEEEee-cCHHHHHH
Confidence 266543333444444331 1 2334456667998864 27999985 48999999
Q ss_pred HHHHHHHH
Q 013461 426 ACESLKRI 433 (442)
Q Consensus 426 ~i~~l~~~ 433 (442)
++++|+++
T Consensus 388 ~~~~l~~~ 395 (396)
T 2q7w_A 388 LCEAIVAV 395 (396)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999875
No 143
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.84 E-value=4.4e-19 Score=172.37 Aligned_cols=289 Identities=12% Similarity=0.077 Sum_probs=191.6
Q ss_pred CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHHHhhhhhhccCCCEEEeCCC
Q 013461 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCFCKKGDLIVADEG 201 (442)
Q Consensus 124 ~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~ 201 (442)
.+|++++++.+++.. . ..+...+...++++.+|+++|.+ +++++++|++++..++.++.++||.|+++.+
T Consensus 12 ~~~~v~~a~~~~~~~----~----~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~ 83 (352)
T 1iug_A 12 LHPKALEALARPQLH----H----RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVY 83 (352)
T ss_dssp CCHHHHHHHHSCCCC----T----TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCHHHHHHhccCCCC----c----cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeC
Confidence 468999888776542 1 12234567789999999999975 5677778999999999999999999999999
Q ss_pred chHHHH--HHHHhcCCeEEEecCC-----CHHHHHHHHHhhcccccc---------------------cc--cccccccC
Q 013461 202 VHWGIQ--NGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKR---------------------SN--SFGVLGRS 251 (442)
Q Consensus 202 ~h~s~~--~~~~l~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~~---------------------a~--~~g~~G~~ 251 (442)
.|++.. ..++..|.+++.++.+ |++++++ ..+.-... .| +.-++-+.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~ 160 (352)
T 1iug_A 84 GKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAK---EGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADM 160 (352)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCC---SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEEC
T ss_pred CchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhc---cCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEEC
Confidence 998865 3334568888777642 4455443 11100000 22 32222111
Q ss_pred CCccc-cccCCCCCceeEEEEeccccc-cCCC-cEEEcCHHhHHH---------HH----hhCCceeccCCCcHHHHHHH
Q 013461 252 GRGLT-EHCGVPVDKIDIVTAAMGHAL-ATEG-GFCTGSARVVDH---------QR----LSSSGYVFSASLPPYLASAA 315 (442)
Q Consensus 252 g~g~~-~~~~v~~~~~diii~S~sK~l-g~~G-G~v~g~~~~i~~---------l~----~~~~~~~~s~s~~p~~aaaa 315 (442)
-.+.. ..+++...+.|++++|++|++ |..| |++++++++++. ++ ..... .+.++.++..++++
T Consensus 161 a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~ 239 (352)
T 1iug_A 161 VTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEG-ESAWTPAINLVLAV 239 (352)
T ss_dssp TTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTT-CCSSCCCHHHHHHH
T ss_pred CccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHHHhhcccC-CCCCCCCHHHHHHH
Confidence 11110 112222224789999999966 4445 899999987754 11 11111 23345566666677
Q ss_pred HHHHHHHhc-ChHHHHHHHHHHHHHHHhhccCCCceeecCC-CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEE
Q 013461 316 ITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNP-ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 393 (442)
Q Consensus 316 ~aal~~l~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v 393 (442)
.++++.+++ .++++++++++++++.+.|+++ |+++..+. .+.++++.++... + ..++.+. |.++||.+
T Consensus 240 ~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~-l~~~gi~v 309 (352)
T 1iug_A 240 AAVLEEVLPRLEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEGV-----P---YARVKEA-FAQRGAVI 309 (352)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCTTC-----C---HHHHHHH-HHTTTEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEEEEcCCCC-----C---HHHHHHH-HHHCCEEE
Confidence 778887654 3567889999999999999987 88876543 5668888774211 1 2357775 44569999
Q ss_pred eeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhh
Q 013461 394 VTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 394 ~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
.++..+. .+..+|++++..+|++|+++++++|++++++++.
T Consensus 310 ~~~~~~~-----~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 350 (352)
T 1iug_A 310 AGGQGPL-----KGKVFRLSLMGAYDRYEALGVAGMFREVLEEILP 350 (352)
T ss_dssp EECCGGG-----TTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC-
T ss_pred EeCCCcc-----CCCEEEEEccccCCHHHHHHHHHHHHHHHHHhcC
Confidence 8876321 1345999999988999999999999999887654
No 144
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.84 E-value=1.6e-19 Score=179.88 Aligned_cols=302 Identities=14% Similarity=0.076 Sum_probs=197.6
Q ss_pred CeeEEEeecCCCCCCCCChHHHHHHHHHHHh-cCCCCCccCccccCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHHHh
Q 013461 108 GKEVVNFASANYLGLIGHEKLLESCTSALEK-YGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFS 184 (442)
Q Consensus 108 G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~-~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~~ 184 (442)
|..|+|++++. ..+|.+.+++.+++.+ ++.....++...+..+...++++++++++|.+ +++++++|++++..
T Consensus 28 ~~~yld~~~~~----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~ 103 (416)
T 1qz9_A 28 GVIYLDGNSLG----ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFK 103 (416)
T ss_dssp TCEECCTTTSC----CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHH
T ss_pred CeEeecCCCcC----CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHH
Confidence 56677765533 3578999999999975 33322111111144578899999999999964 66777778888888
Q ss_pred hhhhhc------cCCC-EEEeCCCchHHHHHHHH----hc--CCeEEEecCCCHHHHHHHHHhhcccccc----------
Q 013461 185 AIPCFC------KKGD-LIVADEGVHWGIQNGLY----LS--RSTVVYFKHNDMDSLRNTLERVTADNKR---------- 241 (442)
Q Consensus 185 ai~a~~------~~gd-~Vi~~~~~h~s~~~~~~----l~--g~~v~~~~~~d~~~Le~~l~~~~~~~~~---------- 241 (442)
++.++. ++|| +|+++.++|+++..++. .. |.+++.++. +++|++.+++.+.-...
T Consensus 104 al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~l~~~i~~~~~~v~~~~~~nptG~~ 181 (416)
T 1qz9_A 104 VLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--PEELPQAIDQDTAVVMLTHVNYKTGYM 181 (416)
T ss_dssp HHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS--GGGHHHHCSTTEEEEEEESBCTTTCBB
T ss_pred HHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc--HHHHHHHhCCCceEEEEeccccCcccc
Confidence 888776 8898 57888889998665532 23 888888876 77787776542211000
Q ss_pred -----------ccccccccc--CCCccccccCCCCCceeEEEEecccccc--CCC-cEEEcCHHhHHHHHhhCCce----
Q 013461 242 -----------SNSFGVLGR--SGRGLTEHCGVPVDKIDIVTAAMGHALA--TEG-GFCTGSARVVDHQRLSSSGY---- 301 (442)
Q Consensus 242 -----------a~~~g~~G~--~g~g~~~~~~v~~~~~diii~S~sK~lg--~~G-G~v~g~~~~i~~l~~~~~~~---- 301 (442)
.|+.-++-+ .+.|.. ..++...+.|+++.|++|+++ ..+ |++++++++++.++....++
T Consensus 182 ~~l~~i~~l~~~~~~~li~D~a~~~g~~-~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~ 260 (416)
T 1qz9_A 182 HDMQALTALSHECGALAIWDLAHSAGAV-PVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHS 260 (416)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTTTTTS-CCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBC
T ss_pred cCHHHHHHHHHHcCCEEEEEccccccCc-CCChhhcCCCEEEecCcccCCCCCCCeEEEEECHHHHhccCCCccccCccc
Confidence 111111111 111110 011111136899999999973 456 89999998876654321110
Q ss_pred ----------------ec-cCCCcHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHhhccC-C--CceeecCC----
Q 013461 302 ----------------VF-SASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDI-H--GLSIASNP---- 355 (442)
Q Consensus 302 ----------------~~-s~s~~p~~aaaa~aal~~l~~--~~~~~~~l~~~~~~l~~~L~~~-~--g~~~~~~~---- 355 (442)
.+ .++.++..++++.++++.+.+ .++++++++++++++.+.|.++ + |+++..+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~ 340 (416)
T 1qz9_A 261 RQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAK 340 (416)
T ss_dssp TTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGG
T ss_pred cccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHH
Confidence 12 224566677777788887753 2568889999999999999875 5 78776542
Q ss_pred CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEec-CCCCHHHHHHHHHHHHHHH
Q 013461 356 ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS-AAHSEADLVKACESLKRIS 434 (442)
Q Consensus 356 ~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~-~~~t~eei~~~i~~l~~~~ 434 (442)
.++++++.+.. ..++.+. |.++||.+.... +..+|++++ ..+|++|+++++++|++++
T Consensus 341 ~~~~~~~~~~~-----------~~~l~~~-l~~~gi~~~~~~---------~~~lRis~~~~~~t~~~i~~~~~~l~~~~ 399 (416)
T 1qz9_A 341 RGSHVSFEHPE-----------GYAVIQA-LIDRGVIGDYRE---------PRIMRFGFTPLYTTFTEVWDAVQILGEIL 399 (416)
T ss_dssp BCSEEEEECTT-----------HHHHHHH-HHTTTEECEEET---------TTEEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCEEEEecCC-----------HHHHHHH-HHhCCcEeccCC---------CCeEEEeCcccCCCHHHHHHHHHHHHHHH
Confidence 36777777631 2356765 456699875321 245999998 4889999999999999988
Q ss_pred HHH
Q 013461 435 AVV 437 (442)
Q Consensus 435 ~~~ 437 (442)
++.
T Consensus 400 ~~~ 402 (416)
T 1qz9_A 400 DRK 402 (416)
T ss_dssp HHT
T ss_pred hcc
Confidence 764
No 145
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.84 E-value=2.5e-19 Score=175.22 Aligned_cols=287 Identities=13% Similarity=0.126 Sum_probs=184.6
Q ss_pred CChHHHHHHHHHHHhcC-CCCC----ccCccccCcHHHHHHHHHHHhhhCCC---cEEEE-cchHHHHHhhhhhhccCCC
Q 013461 124 GHEKLLESCTSALEKYG-VGSC----GPRGFYGTIDVHLDCEARIAKFLGTP---DSILY-SYGLSTMFSAIPCFCKKGD 194 (442)
Q Consensus 124 ~~p~v~ea~~~~l~~~g-~~~~----~~~~~~g~~~~~~~le~~lA~~~g~e---~~i~~-~sG~~a~~~ai~a~~~~gd 194 (442)
.+|++++++.+.+.+++ .+++ +++ ..+..+.++++++++++++|.+ +++++ ++|++++..++.+++++||
T Consensus 15 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd 93 (362)
T 2c0r_A 15 LPLEVLERAQAEFVDYQHTGMSIMEMSHR-GAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQ 93 (362)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTT-SHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTC
T ss_pred CCHHHHHHHHHHHhhhhhcCccccccCCC-cHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCCCCC
Confidence 57999999999887652 1111 111 1223457889999999999975 45555 6778999999999999999
Q ss_pred EEEeCCCchHH--HHHHHHhcCCeEEEecCC---------CHHHHHHHHHhhcccccc------ccccccc-c-------
Q 013461 195 LIVADEGVHWG--IQNGLYLSRSTVVYFKHN---------DMDSLRNTLERVTADNKR------SNSFGVL-G------- 249 (442)
Q Consensus 195 ~Vi~~~~~h~s--~~~~~~l~g~~v~~~~~~---------d~~~Le~~l~~~~~~~~~------a~~~g~~-G------- 249 (442)
.|++....|++ ....++..| +++.++.+ |.++++ + +++.+. ....|.. .
T Consensus 94 ~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i---~~~t~~v~~~~~~n~tG~~~~~l~~i~~ 167 (362)
T 2c0r_A 94 TANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--L---QDNAAYLHLTSNETIEGAQFKAFPDTGS 167 (362)
T ss_dssp EEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--C---CTTEEEEEEESEETTTTEECSSCCCCTT
T ss_pred eEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--c---CCCcCEEEEeCCcCccceecccccccCC
Confidence 88765444444 235556667 77766532 222221 2 222111 1122221 0
Q ss_pred -----c--CCCccccccCCCCCceeEEEEeccccccCCC-cEEEcCHHhHHHHHhhCCce----------eccCCCcHHH
Q 013461 250 -----R--SGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLSSSGY----------VFSASLPPYL 311 (442)
Q Consensus 250 -----~--~g~g~~~~~~v~~~~~diii~S~sK~lg~~G-G~v~g~~~~i~~l~~~~~~~----------~~s~s~~p~~ 311 (442)
+ .+.|. ..++..+.|+++.|+||++|+.| ||+++++++++.++.....+ ....+.++..
T Consensus 168 ~~vivD~a~~~~~---~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~ 244 (362)
T 2c0r_A 168 VPLIGDMSSDILS---RPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFG 244 (362)
T ss_dssp SCEEEECTTTTTS---SCCCGGGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHH
T ss_pred CEEEEEChhhccC---CccchhHCcEEEEeccccccCcCcEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHH
Confidence 0 01111 11122345899999999999877 99999998876554311100 1123456667
Q ss_pred HHHHHHHHHHHhcC---hHHHHHHHHHHHHHHHhhccCCCc-eeecC---CCCCEEEEEecCCCCCchhhHHHHHHHHHH
Q 013461 312 ASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGL-SIASN---PESPIVFLILEKSTGSMKNDLQLLEDIADW 384 (442)
Q Consensus 312 aaaa~aal~~l~~~---~~~~~~l~~~~~~l~~~L~~~~g~-~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 384 (442)
++++.++++.+++. ++++++++++++++.+.|++++++ ++..+ +..+++++.++. .....++++.
T Consensus 245 ~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 316 (362)
T 2c0r_A 245 IYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLAS--------EELEKEFVKA 316 (362)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSC--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCC--------cchHHHHHHH
Confidence 77777888876543 678899999999999999987326 66422 234567776631 1224567775
Q ss_pred HHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 385 ALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 385 ~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
|+++||.+.++..+ +..+|++++..+|++|+++++++|++++++
T Consensus 317 -L~~~gi~~~~g~~~-------~~~iRis~~~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 317 -SEQEGFVGLKGHRS-------VGGLRASIYNAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp -HHHTTEESCBCCTT-------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHCCCeeccCCCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 66679987654332 245999999989999999999999988754
No 146
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.84 E-value=1.2e-20 Score=186.86 Aligned_cols=291 Identities=11% Similarity=0.082 Sum_probs=188.3
Q ss_pred CeeEEEeecCCCCCC----CCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh-CC----CcEEE--Ec
Q 013461 108 GKEVVNFASANYLGL----IGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-GT----PDSIL--YS 176 (442)
Q Consensus 108 G~~~id~~s~~~l~~----~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~-g~----e~~i~--~~ 176 (442)
|.++|||+++.|++. ..+|.+++++.+++++.. . ..|+......++++.+|+++ +. +++++ ++
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~----~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~ 98 (394)
T 2ay1_A 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET--T----KTYAGLSGEPEFQKAMGELILGDGLKSETTATLATV 98 (394)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCC--C----CCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEE
T ss_pred CccccccccceeeCCCCCccCcHHHHHHHHHhcCCcc--c----CCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecC
Confidence 456899999887544 346899999998886511 1 11222333478888888886 43 56777 88
Q ss_pred chHHHHHhhhhhhcc--CCCEEEeCCCchHHHHHHHHhcCCeEEEecC---C----CHHHHHHHHHhhcccccc------
Q 013461 177 YGLSTMFSAIPCFCK--KGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---N----DMDSLRNTLERVTADNKR------ 241 (442)
Q Consensus 177 sG~~a~~~ai~a~~~--~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~---~----d~~~Le~~l~~~~~~~~~------ 241 (442)
+|++|+..++.++.. +||.|+++.++|..+...++..|.+++.++. + |++++++.+++..+....
T Consensus 99 g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~ 178 (394)
T 2ay1_A 99 GGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCC 178 (394)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSS
T ss_pred CchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCC
Confidence 899999999887754 9999999999999999999989999988876 3 788999888753211111
Q ss_pred ---------------------ccccccc-ccC----CCc------cccccCCCCCceeEEEEeccccccCCC---cEEEc
Q 013461 242 ---------------------SNSFGVL-GRS----GRG------LTEHCGVPVDKIDIVTAAMGHALATEG---GFCTG 286 (442)
Q Consensus 242 ---------------------a~~~g~~-G~~----g~g------~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g 286 (442)
.|+.-++ .+. +.+ ....+... .+.+++++||||++|+.| ||+++
T Consensus 179 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~riG~~~~ 257 (394)
T 2ay1_A 179 HNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASR-IPEVLIAASCSKNFGIYRERTGCLLA 257 (394)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHH-CSSEEEEEECTTTTTCGGGCEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhc-CCCEEEEEeccCCCcCcCCccceEEE
Confidence 1111111 000 000 01111100 123688999999998777 99887
Q ss_pred ---CHHhHHHHHhhC---CceeccCCCcHHHHHHHHHHHHHH-------hcChHHHHHHHHHHHHHHHhhccCC---Cce
Q 013461 287 ---SARVVDHQRLSS---SGYVFSASLPPYLASAAITAIDVL-------EENPDLITKLKKNTAILRTGLSDIH---GLS 350 (442)
Q Consensus 287 ---~~~~i~~l~~~~---~~~~~s~s~~p~~aaaa~aal~~l-------~~~~~~~~~l~~~~~~l~~~L~~~~---g~~ 350 (442)
++++++.+.... ....+++ .+++.++++.++++.. +..++++++++++++++.+.|+++. +++
T Consensus 258 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 336 (394)
T 2ay1_A 258 LCADAATRELAQGAMAFLNRQTYSF-PPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFG 336 (394)
T ss_dssp ECSSHHHHHHHHHHHHHHHHTTTSS-CCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTT
T ss_pred EeCCHHHHHHHHHHHHHHHhhhcCC-CChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCee
Confidence 676554432110 0112222 3556666667777643 2234577888999999999998762 366
Q ss_pred eecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHH
Q 013461 351 IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESL 430 (442)
Q Consensus 351 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l 430 (442)
+..+..+.++++.+. . ..+ ..+++++||.+.+ ++|++++ .+|++|+++++++|
T Consensus 337 ~~~~~~g~~~~~~~~--------~----~~~-~~~l~~~gi~v~~-------------~~Ris~~-~~~~~~i~~~~~~l 389 (394)
T 2ay1_A 337 FVAEHRGMFSRLGAT--------P----EQV-KRIKEEFGIYMVG-------------DSRINIA-GLNDNTIPILARAI 389 (394)
T ss_dssp HHHHCCSSEEECCCC--------H----HHH-HHHHHHHCEECCT-------------TCEEEGG-GCCTTTHHHHHHHH
T ss_pred EEcCCceEEEeeCCC--------H----HHH-HHHHHhCCEEecC-------------CCeEEee-cCCHhhHHHHHHHH
Confidence 544334556554431 1 133 3456667998864 2799998 47999999999999
Q ss_pred HHH
Q 013461 431 KRI 433 (442)
Q Consensus 431 ~~~ 433 (442)
+++
T Consensus 390 ~~~ 392 (394)
T 2ay1_A 390 IEV 392 (394)
T ss_dssp HHH
T ss_pred HHc
Confidence 875
No 147
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.84 E-value=1.5e-19 Score=176.38 Aligned_cols=305 Identities=13% Similarity=0.115 Sum_probs=191.3
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCC-CCC----ccCccccCcHHHHHHHHHHHhhhCCC---cEEEEcch-HH
Q 013461 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGV-GSC----GPRGFYGTIDVHLDCEARIAKFLGTP---DSILYSYG-LS 180 (442)
Q Consensus 110 ~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~-~~~----~~~~~~g~~~~~~~le~~lA~~~g~e---~~i~~~sG-~~ 180 (442)
+++++..+.+ ..+|.+++++.+.++++.. +.+ .++ .++..+...++++.+++++|.+ ++++++++ ++
T Consensus 3 ~~~~~~~g~~---~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~ 78 (360)
T 1w23_A 3 QVFNFNAGPS---ALPKPALERAQKELLNFNDTQMSVMELSHR-SQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASL 78 (360)
T ss_dssp CCEECCSSSC---CCCHHHHHHHHHTSSSSTTSSSCGGGSCTT-SHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH
T ss_pred ceEeecCCCc---CCCHHHHHHHHHHhhhhccccccccccCCC-CHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchH
Confidence 4566644432 3568999999998876411 111 111 3455667899999999999975 45555565 79
Q ss_pred HHHhhhhhhcc---CCCEEEeCCCchHHHHHHHHhcCCeEEEecC------CCHHHHHH-HHHhhcccccc---cccccc
Q 013461 181 TMFSAIPCFCK---KGDLIVADEGVHWGIQNGLYLSRSTVVYFKH------NDMDSLRN-TLERVTADNKR---SNSFGV 247 (442)
Q Consensus 181 a~~~ai~a~~~---~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~------~d~~~Le~-~l~~~~~~~~~---a~~~g~ 247 (442)
|+..++.+++. +||+|+++...|.+... ++..| +++.++. .|++++++ .+...++.... ....|.
T Consensus 79 al~~~~~~l~~~~~~g~~vi~~~~~~~~~~~-~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~ 156 (360)
T 1w23_A 79 QFTMLPMNLLTKGTIGNYVLTGSWSEKALKE-AKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGT 156 (360)
T ss_dssp HHHHHHHHHCCTTCEEEEEECSHHHHHHHHH-HHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTE
T ss_pred HHHHHHHHhcCCCCcccEEEecchhHHHHHH-HHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcce
Confidence 99988888775 47788888888876433 45668 8887763 35566665 44321111000 111222
Q ss_pred cc-----cCCCccc--c-----ccCCCCCceeEEEEeccccccCCC-cEEEcCHHhHHHHHhhCCcee---------c-c
Q 013461 248 LG-----RSGRGLT--E-----HCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLSSSGYV---------F-S 304 (442)
Q Consensus 248 ~G-----~~g~g~~--~-----~~~v~~~~~diii~S~sK~lg~~G-G~v~g~~~~i~~l~~~~~~~~---------~-s 304 (442)
.- +.+.-+. + ...++..+.|++++|+||++|+.| ||+++++++++.++.....+. + .
T Consensus 157 ~~~~i~~~~~~~li~D~a~~~~~~~~~~~~~di~~~s~sK~~~~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (360)
T 1w23_A 157 QYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLY 236 (360)
T ss_dssp ECSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCS
T ss_pred ecccccccCCceEEEechhhcCCCCcCcccCCEEEEEcccccCCCCcEEEEEcHHHHhhcccCCcchhhhhhhhhccCCC
Confidence 10 1110000 0 001112234899999999999777 999999988765543221110 1 1
Q ss_pred CCCcHHHHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHHhhccCCCc-eee--cCCCCC-EEEEEecCCCCCchhhHHH
Q 013461 305 ASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGL-SIA--SNPESP-IVFLILEKSTGSMKNDLQL 377 (442)
Q Consensus 305 ~s~~p~~aaaa~aal~~l~~~---~~~~~~l~~~~~~l~~~L~~~~g~-~~~--~~~~~~-i~~~~~~~~~~~~~~~~~~ 377 (442)
++.++..++++.++++.+.+. ++++++++++++++.+.|++++++ ... ....++ ++++.++. ...
T Consensus 237 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 308 (360)
T 1w23_A 237 NTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRN--------EEL 308 (360)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSS--------HHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCC--------Ccc
Confidence 234555556666778766532 567889999999999999887545 442 111344 88887632 122
Q ss_pred HHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 378 LEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 378 ~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
..++.+. |.++||.+.++... +..+|++++..+|++|+++++++|++++++
T Consensus 309 ~~~~~~~-l~~~gi~~~~~~~~-------~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 309 NQQFLAK-AKEQGFVGLNGHRS-------VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp HHHHHHH-HHHTTEESCBCCTT-------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHCCeeeecCCCC-------CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 4467765 55679998765431 345999999989999999999999988654
No 148
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.83 E-value=5.8e-20 Score=183.02 Aligned_cols=295 Identities=9% Similarity=0.019 Sum_probs=192.7
Q ss_pred CCeeEEEeecCCCCCCC----CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh-CC-------CcEEE
Q 013461 107 SGKEVVNFASANYLGLI----GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-GT-------PDSIL 174 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~----~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~-g~-------e~~i~ 174 (442)
+|+++|||+++.|++.. .+|.+.+++.+++++.+. . ..|+......++++.+|+++ +. +++++
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~----~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~ 102 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSL-N----HEYLPILGLAEFRTCASRLALGDDSPALQEKRVGG 102 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTC-C----CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhh-c----cCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEE
Confidence 36778999998875542 347899998888733111 1 11222333478888888887 42 67888
Q ss_pred --EcchHHHHHhhhh--hhccCC-----CEEEeCCCchHHHHHHHHhcCCe-EEEecC---C----CHHHHHHHHHhhcc
Q 013461 175 --YSYGLSTMFSAIP--CFCKKG-----DLIVADEGVHWGIQNGLYLSRST-VVYFKH---N----DMDSLRNTLERVTA 237 (442)
Q Consensus 175 --~~sG~~a~~~ai~--a~~~~g-----d~Vi~~~~~h~s~~~~~~l~g~~-v~~~~~---~----d~~~Le~~l~~~~~ 237 (442)
+++|++|+..++. +++++| |.|+++.++|..+...++..|.+ ++.++. + |++++++.+++...
T Consensus 103 ~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 182 (412)
T 1ajs_A 103 VQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPE 182 (412)
T ss_dssp EEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCT
T ss_pred EECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCCC
Confidence 8889999998864 456889 99999999999999999999999 888876 3 68889888875321
Q ss_pred cccc---------------------------ccccccc--------ccCC---Cc-cccccCCCCCceeEEEEecccccc
Q 013461 238 DNKR---------------------------SNSFGVL--------GRSG---RG-LTEHCGVPVDKIDIVTAAMGHALA 278 (442)
Q Consensus 238 ~~~~---------------------------a~~~g~~--------G~~g---~g-~~~~~~v~~~~~diii~S~sK~lg 278 (442)
+... .|++-++ +..| .. ....+.. ..+.++++.||||++|
T Consensus 183 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~ 261 (412)
T 1ajs_A 183 FSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVS-EGFELFCAQSFSKNFG 261 (412)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH-TTCCEEEEEECTTTSC
T ss_pred CcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhc-cCCcEEEEEecccccC
Confidence 1111 1121111 1111 00 0111110 1234689999999998
Q ss_pred CCC---cEEEc---CHH----hHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHh-------cChHHHHHHHHHHHHHHH
Q 013461 279 TEG---GFCTG---SAR----VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-------ENPDLITKLKKNTAILRT 341 (442)
Q Consensus 279 ~~G---G~v~g---~~~----~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~-------~~~~~~~~l~~~~~~l~~ 341 (442)
+.| ||+++ +++ +++.++... ...+++ .+++.++++.++|+..+ ..++++++++++++++.+
T Consensus 262 ~~G~riG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (412)
T 1ajs_A 262 LYNERVGNLTVVAKEPDSILRVLSQMQKIV-RVTWSN-PPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRA 339 (412)
T ss_dssp CGGGCEEEEEEECSSHHHHHHHHHHHHHHH-HTTTSS-CCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEEecCCHHHHHHHHHHHHHHH-hcccCC-CChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766 99998 887 444443311 112222 35566666777776542 235678889999999999
Q ss_pred hhccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCC
Q 013461 342 GLSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAH 418 (442)
Q Consensus 342 ~L~~~~---g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~ 418 (442)
.|+++. ++++..+..+.++++.+. .+++..+++++||++.+ ++|++++. .
T Consensus 340 ~L~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~gv~v~~-------------~~Ris~~~-~ 392 (412)
T 1ajs_A 340 RLEALKTPGTWNHITDQIGMFSFTGLN-------------PKQVEYLINQKHIYLLP-------------SGRINMCG-L 392 (412)
T ss_dssp HHHHTTCSSCCHHHHHCCSSEEECCCC-------------HHHHHHHHHTTCEECCT-------------TSEEEGGG-C
T ss_pred HHHhhCCCCCeeEEcCCCceEEEeCCC-------------HHHHHHHHHhCCEEecC-------------CcEEEeee-C
Confidence 998863 366554334455544331 13445567778999874 27999985 5
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 013461 419 SEADLVKACESLKRISAV 436 (442)
Q Consensus 419 t~eei~~~i~~l~~~~~~ 436 (442)
|++|+++++++|++++++
T Consensus 393 ~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 393 TTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp CTTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 899999999999998765
No 149
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.83 E-value=1.1e-19 Score=177.05 Aligned_cols=293 Identities=18% Similarity=0.149 Sum_probs=195.2
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHHHhhhh
Q 013461 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIP 187 (442)
Q Consensus 110 ~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~~ai~ 187 (442)
.+++|.+ ++.+ ..+|++++++.+++..|+.+ .|..+...++++.+++++|.+ +++++++|++++..++.
T Consensus 14 ~~i~l~~-~~~~-~~~~~v~~a~~~~~~~~~~~-------~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~ 84 (359)
T 1svv_A 14 KPYSFVN-DYSV-GMHPKILDLMARDNMTQHAG-------YGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACS 84 (359)
T ss_dssp -CEECSC-SCSS-CCCHHHHHHHHHHTTCCCCS-------TTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHH
T ss_pred eeEEecC-CCcC-CCCHHHHHHHHHHHhhcccc-------ccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHH
Confidence 4788877 4455 56899999999998765432 356788999999999999854 57888899999999999
Q ss_pred hhccCCCEEEeCCCchHHHHH--HHHhcCCeEEEecCC----CHHHHHHHHHhhc------ccccc--------------
Q 013461 188 CFCKKGDLIVADEGVHWGIQN--GLYLSRSTVVYFKHN----DMDSLRNTLERVT------ADNKR-------------- 241 (442)
Q Consensus 188 a~~~~gd~Vi~~~~~h~s~~~--~~~l~g~~v~~~~~~----d~~~Le~~l~~~~------~~~~~-------------- 241 (442)
++.++||.|+++.+.|.++.. .++..|.+++.++.+ |+++|++.+++.. .....
T Consensus 85 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~~~~~ 164 (359)
T 1svv_A 85 LALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQ 164 (359)
T ss_dssp HHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHH
T ss_pred HHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcCCCCceecCHH
Confidence 999999999999999999877 377889999998875 4889999887641 11000
Q ss_pred ----------cccccccccCCC-c-cccccCCCC------CceeEEEEeccccccCCC-cEEEcCHHhHHHHHhhC--Cc
Q 013461 242 ----------SNSFGVLGRSGR-G-LTEHCGVPV------DKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLSS--SG 300 (442)
Q Consensus 242 ----------a~~~g~~G~~g~-g-~~~~~~v~~------~~~diii~S~sK~lg~~G-G~v~g~~~~i~~l~~~~--~~ 300 (442)
.|++-++-+.-. + .....+... ...|+++.|++|..+..| |++++++++++.++... .+
T Consensus 165 ~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~~~~g~l~~~~~~~~~~~~~~~~~~ 244 (359)
T 1svv_A 165 ELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRG 244 (359)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCCCCceEEEEEcccHHHHHHHHHhcCC
Confidence 111111111111 0 000111111 235789999999866656 89999998877665421 22
Q ss_pred eeccCCCcHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHH
Q 013461 301 YVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLL 378 (442)
Q Consensus 301 ~~~s~s~~p~~aaaa~aal~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 378 (442)
+.++.+ .+.. ++..++ +++ .++++++++++++++.+.| +.+|+++..+..++++++.++
T Consensus 245 ~~~~~~-~~~~-~~~~~~---l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~------------- 305 (359)
T 1svv_A 245 ALMAKG-WLLG-IQFEVL---MKDNLFFELGAHSNKMAAILKAGL-EACGIRLAWPSASNQLFPILE------------- 305 (359)
T ss_dssp CCCTTT-HHHH-HHHHHH---TSTTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSSSEECBEEE-------------
T ss_pred cccccc-hhhH-HHHHHH---HhhhhHHHHHHHHHHHHHHHHHHh-ccCCeEEccCCccceEEEEcC-------------
Confidence 223322 2222 222222 332 2457888999999999999 556888775556777766552
Q ss_pred HHHHHHHHHhC-CEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 379 EDIADWALKED-GVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 379 ~~i~~~~L~~~-GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
.++++. |.++ ||.+.+.. +. .+..+|++++..+|++|+++++++|+++++++
T Consensus 306 ~~~~~~-l~~~~gi~v~~~~-~~-----~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 306 NTMIAE-LNNDFDMYTVEPL-KD-----GTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp HHHHHH-HTTTEECEEEEEE-TT-----TEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred HHHHHH-HHHhcCEEEEecc-cC-----CCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 156665 4455 99983311 00 12459999999899999999999999887653
No 150
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.83 E-value=8.1e-19 Score=176.34 Aligned_cols=298 Identities=16% Similarity=0.133 Sum_probs=196.3
Q ss_pred ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhh
Q 013461 106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSA 185 (442)
Q Consensus 106 ~~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~a 185 (442)
++|+++|+|+.+++ ++++++++.+++.... +...+...++++++|+++|.++++++++|++|+..+
T Consensus 28 ~~~~~~i~~~~~~~-----~~~~~~a~~~~~~~~~---------~~~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~a 93 (437)
T 3bb8_A 28 EAGKSVVPPSGKVI-----GTKELQLMVEASLDGW---------LTTGRFNDAFEKKLGEYLGVPYVLTTTSGSSANLLA 93 (437)
T ss_dssp CTTTSCBCSCCCCC-----CHHHHHHHHHHHHHCC---------CBSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHH
T ss_pred cCCCccccCCCCCC-----CHHHHHHHHHHHHcCC---------cCCChHHHHHHHHHHHHHCCCcEEEeCCHHHHHHHH
Confidence 35778888876554 5899999999987621 122356789999999999999999999999999999
Q ss_pred hhhh---------ccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC------CHHHHHHHHHhhcccccc---------
Q 013461 186 IPCF---------CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKR--------- 241 (442)
Q Consensus 186 i~a~---------~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~------d~~~Le~~l~~~~~~~~~--------- 241 (442)
+.++ .++||.|+++.+.|.++...+...|++++.++.+ |++++++.++..+.....
T Consensus 94 l~~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~g~~~~ 173 (437)
T 3bb8_A 94 LTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSDKTKAIMIAHTLGNLFD 173 (437)
T ss_dssp HHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHHHTTCEEEECCEETTTTEECGGGHHHHCCTTEEEEEEECGGGCCCC
T ss_pred HHHhhhcccccccCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccCccCCcCHHHHHHhcCCCCeEEEEeCCCCChhc
Confidence 9888 7899999999999999999999999999888754 678888776542211100
Q ss_pred -------------------cccccccccCCCccccccCCCCCceeEEEEecccccc---CCCcEEEcCHHhHHH-H---H
Q 013461 242 -------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA---TEGGFCTGSARVVDH-Q---R 295 (442)
Q Consensus 242 -------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg---~~GG~v~g~~~~i~~-l---~ 295 (442)
+|++|... ++ ...+. ..|+++.||+|+.+ ..||+++++++.+.. + +
T Consensus 174 ~~~i~~l~~~~~~~li~D~a~~~g~~~-~~----~~~~~---~~d~~~~s~~~~k~l~~g~gg~~~~~~~~~~~~~~~~~ 245 (437)
T 3bb8_A 174 LAEVRRVADKYNLWLIEDCCDALGSTY-DG----KMAGT---FGDIGTVSFYPAKHITMGEGGAVFTQSAELKSIIESFR 245 (437)
T ss_dssp HHHHHHHHHHHTCEEEEECTTCTTCEE-TT----EETTS---SSSEEEEECSTTSSSCCSSCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEECccccCceE-CC----eeccc---ccCEEEEECcCCcCCCCCCeEEEEeCCHHHHHHHHHHH
Confidence 22222111 11 11221 14788888865553 346899988654443 2 2
Q ss_pred hhCCc----------------------------------eeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q 013461 296 LSSSG----------------------------------YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRT 341 (442)
Q Consensus 296 ~~~~~----------------------------------~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~ 341 (442)
..+.. ..++..++++.+++++++++.++ +..++.+++.+++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~~~---~~~~~~~~~~~~l~~ 322 (437)
T 3bb8_A 246 DWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERIE---EFVEKRKANFKYLKD 322 (437)
T ss_dssp BTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 11111 01223456888888888877653 355666888999999
Q ss_pred hhccCCCceeecCCC-----C-CEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccC-----------
Q 013461 342 GLSDIHGLSIASNPE-----S-PIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKC----------- 404 (442)
Q Consensus 342 ~L~~~~g~~~~~~~~-----~-~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~----------- 404 (442)
.|++++|+.+.+... + ..+.+.+..+.+. + ..++.+. |.++||.++.+..+.+...
T Consensus 323 ~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~l~~~-L~~~GI~v~~~~~~~~~~~p~~~~~~~~~~ 395 (437)
T 3bb8_A 323 ALQSCADFIELPEATENSDPSWFGFPITLKEDSGV---S---RIDLVKF-LDEAKVGTRLLFAGNLTRQPYFHDVKYRVV 395 (437)
T ss_dssp HGGGGTTTEECCCCCTTEECCCSSEEEEECGGGSS---C---HHHHHHH-HHHTTBCCBCCTTSSGGGSGGGSSCCCEEC
T ss_pred HhhccCCccccCCCCCCCceeeEEEEEEECCcCcC---c---HHHHHHH-HHHCCCceeccCCcccccCchhhccCcccc
Confidence 999877765442110 1 1233334321010 1 2356664 5567999987654321100
Q ss_pred -CCC-------CceEEEecCCCCHHHHHHHHHHHHHHHH
Q 013461 405 -RLP-------VGIRLFVSAAHSEADLVKACESLKRISA 435 (442)
Q Consensus 405 -~~~-------~~iRi~~~~~~t~eei~~~i~~l~~~~~ 435 (442)
.+| ..||++++..+|++|+++++++|+++++
T Consensus 396 ~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 396 GELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp SCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 011 1299999999999999999999988653
No 151
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.83 E-value=5.5e-20 Score=182.21 Aligned_cols=312 Identities=14% Similarity=0.104 Sum_probs=180.6
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHh-cCCCCCccCccccCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHHH
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEK-YGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF 183 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~-~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~ 183 (442)
++.-|+|++++. ..+|++++++.+++.+ ++.....+...++..+...++++++|+++|.+ +++++++|++|+.
T Consensus 19 ~~~iyld~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~ 94 (400)
T 3vax_A 19 SHMTYLDAAATT----RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNN 94 (400)
T ss_dssp ---CCCCCCCCS----SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHH
T ss_pred CCcEEecCCCCC----CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHH
Confidence 344567776543 2479999999999976 33332222222344677899999999999975 6788888899999
Q ss_pred hhhhhhc----cCCC-EEEeCCCchHHHHHHHHh---cCCeEEEecCC-----CHHHHHHHHHhhcccccc---------
Q 013461 184 SAIPCFC----KKGD-LIVADEGVHWGIQNGLYL---SRSTVVYFKHN-----DMDSLRNTLERVTADNKR--------- 241 (442)
Q Consensus 184 ~ai~a~~----~~gd-~Vi~~~~~h~s~~~~~~l---~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~~--------- 241 (442)
.++.++. ++|| .|+++.+.|+++...+.. .|++++.++.+ |+++|++.+++.+.-...
T Consensus 95 ~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~ 174 (400)
T 3vax_A 95 IALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGV 174 (400)
T ss_dssp HHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCB
T ss_pred HHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCCCcee
Confidence 9999998 8999 999999999987766554 58899888865 678887776543211100
Q ss_pred ------------ccccccccc--CCCccccccCCCCCceeEEEEeccccccCCC-cEEE-cCH-HhH---HHHHhhC---
Q 013461 242 ------------SNSFGVLGR--SGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCT-GSA-RVV---DHQRLSS--- 298 (442)
Q Consensus 242 ------------a~~~g~~G~--~g~g~~~~~~v~~~~~diii~S~sK~lg~~G-G~v~-g~~-~~i---~~l~~~~--- 298 (442)
.|+.-++-+ .+.|.. ..++... .|+++.|++|.+|..| |+++ +++ ++. +.++...
T Consensus 175 ~~~l~~i~~la~~~~~~li~D~a~~~~~~-~~~~~~~-~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 252 (400)
T 3vax_A 175 IQPVAELAQQLRATPTYLHVDAAQGYGKV-PGDLTTP-IDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIMFGG 252 (400)
T ss_dssp BCCHHHHHHHHTTSSCEEEEECTTTTTTS-GGGGGSC-CSEEEEETGGGTSCSSCEEEEECBCSSSTTCBCCCCCSSCSS
T ss_pred eCcHHHHHHHHHhcCCEEEEEhhhhcCCC-CcChhhc-CcEEEEeHHHhCCCCceEEEEEecchhccccccccCceecCC
Confidence 222211111 111111 1122212 6899999999777654 7777 665 111 1111100
Q ss_pred -Cceec-cCCCcHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHhhccCCCceeecCCC---CCEEEEEecCCCCCch
Q 013461 299 -SGYVF-SASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPE---SPIVFLILEKSTGSMK 372 (442)
Q Consensus 299 -~~~~~-s~s~~p~~aaaa~aal~~l~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~---~~i~~~~~~~~~~~~~ 372 (442)
....+ .++.++..++++.++++.+++ .++++++++++++++.+.|+ .+++++..+.. ..++.+.+...
T Consensus 253 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~----- 326 (400)
T 3vax_A 253 GQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFEDV----- 326 (400)
T ss_dssp CTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECTTC-----
T ss_pred CceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeCCC-----
Confidence 00011 234466666666677876654 35688899999999999998 77888765433 34777766421
Q ss_pred hhHHHHHHHHHHHHHhCCEEEeeccCcccc---------cCCC-----CCceEEEe-cCCCCHHHHHHHHHHHHHHHHH
Q 013461 373 NDLQLLEDIADWALKEDGVFVVTSKRSMLD---------KCRL-----PVGIRLFV-SAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 373 ~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~---------~~~~-----~~~iRi~~-~~~~t~eei~~~i~~l~~~~~~ 436 (442)
+ ..++.+. |. +||.++++..+... .... +..+||++ +..+|++|+++++++|++++++
T Consensus 327 -~---~~~l~~~-L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 327 -D---AEAFLVT-LK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp -C---HHHHHHH-HH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred -C---HHHHHHH-Hh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 1 2356665 44 58888765322110 0000 25599999 9889999999999999987653
No 152
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.83 E-value=1.5e-19 Score=180.74 Aligned_cols=294 Identities=11% Similarity=0.044 Sum_probs=181.8
Q ss_pred eeEEEeecCCCCCC---C-CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC----CC--cEEEEcch
Q 013461 109 KEVVNFASANYLGL---I-GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG----TP--DSILYSYG 178 (442)
Q Consensus 109 ~~~id~~s~~~l~~---~-~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g----~e--~~i~~~sG 178 (442)
.++|||+.+.|+.. . .+|.|++++.+++++.+. .++....|..++++.+++.+....+ .+ +++++++|
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~ 126 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLP--RGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGG 126 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCC--CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCC--CCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCcc
Confidence 46899988854432 2 237999999999987221 1122233444444444444443333 23 56777888
Q ss_pred HHHHHhhh--hhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC----C---CHHHHHHHHHhhcccccc--------
Q 013461 179 LSTMFSAI--PCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH----N---DMDSLRNTLERVTADNKR-------- 241 (442)
Q Consensus 179 ~~a~~~ai--~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~----~---d~~~Le~~l~~~~~~~~~-------- 241 (442)
++++..++ .+++++||.|+++.++|.++...++..|.+++.++. + |++++++.+++..+..+.
T Consensus 127 t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~N 206 (420)
T 4f4e_A 127 TGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHN 206 (420)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCT
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 89999884 466899999999999999999999999999998886 3 788999888743222111
Q ss_pred -------------------ccccccccc--------C----CCccccccCCCCCceeEEEEeccccccCCC---cEEE--
Q 013461 242 -------------------SNSFGVLGR--------S----GRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT-- 285 (442)
Q Consensus 242 -------------------a~~~g~~G~--------~----g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~-- 285 (442)
.|++-++-+ . ...+....+ ..+.+++++||||++|+.| ||++
T Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~~~~G~RiG~~~~~ 284 (420)
T 4f4e_A 207 PTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAA--ANLNVFVSSSFSKSFSLYGERVGALSII 284 (420)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHH--TTCCEEEEEECTTTTTCGGGCEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHh--cCCCEEEEEeCCccCcCcCCCcEEEEEE
Confidence 112111100 0 011111111 1356899999999999776 8864
Q ss_pred -cCHHhHHHHHhhCC---ceeccCCCcHHHHHHHHHHHHHH-------hcChHHHHHHHHHHHHHHHhhccC---CCcee
Q 013461 286 -GSARVVDHQRLSSS---GYVFSASLPPYLASAAITAIDVL-------EENPDLITKLKKNTAILRTGLSDI---HGLSI 351 (442)
Q Consensus 286 -g~~~~i~~l~~~~~---~~~~s~s~~p~~aaaa~aal~~l-------~~~~~~~~~l~~~~~~l~~~L~~~---~g~~~ 351 (442)
+++++++.+..... ...++. .|++.++++.++++.. +..++++++++++++++.+.|+++ +++++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 363 (420)
T 4f4e_A 285 TDSKDEAARVLSQLKRVIRTNYSN-PPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSF 363 (420)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTSS-CCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTH
T ss_pred cCCHHHHHHHHHHHHHHHhcccCC-CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcee
Confidence 35666554321110 011222 2444444444444331 223567889999999999999876 36665
Q ss_pred ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHH
Q 013461 352 ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLK 431 (442)
Q Consensus 352 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~ 431 (442)
..+..+.++++.+. . +.+..+++++||++.++ .|++++. +|++++++++++|+
T Consensus 364 ~~~~~g~~~~~~~~--------~-----~~~~~~l~~~gI~v~~~-------------~Ris~~~-~~~~~i~~~~~~l~ 416 (420)
T 4f4e_A 364 INAQRGMFSYSGLT--------S-----AQVDRLREEFGIYAVST-------------GRICVAA-LNTRNLDVVANAIA 416 (420)
T ss_dssp HHHSCSSEEECCCC--------H-----HHHHHHHHHHCEECCTT-------------SEEEGGG-CCTTTHHHHHHHHH
T ss_pred ECCCccEEEEeCCC--------H-----HHHHHHHHhCCEEecCC-------------CeEEEec-CCHHHHHHHHHHHH
Confidence 54445555554431 1 22334566679988752 5999864 57888999999999
Q ss_pred HHH
Q 013461 432 RIS 434 (442)
Q Consensus 432 ~~~ 434 (442)
+++
T Consensus 417 ~~l 419 (420)
T 4f4e_A 417 AVL 419 (420)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 153
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.83 E-value=2.7e-19 Score=175.84 Aligned_cols=284 Identities=10% Similarity=0.106 Sum_probs=185.9
Q ss_pred hHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhh-ccCCCEEEeCCCchH
Q 013461 126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHW 204 (442)
Q Consensus 126 p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~-~~~gd~Vi~~~~~h~ 204 (442)
|++++++.+.+... .|+..+...++|+++|+++|.++++++++|++|+..++.++ .++||.|+++.+.|.
T Consensus 17 ~~~~~a~~~~~~~~---------~~~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~ 87 (373)
T 3frk_A 17 YEIKFKFEEIYKRN---------WFILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFI 87 (373)
T ss_dssp HHHHHHHHHHHHHT---------CCSSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCT
T ss_pred HHHHHHHHHHHHCC---------CccCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcH
Confidence 56777777777652 12345778999999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHhcCCeEEEecCC------CHHHHHHHHHhhcccccc------------------ccccccccc--CCCccccc
Q 013461 205 GIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKR------------------SNSFGVLGR--SGRGLTEH 258 (442)
Q Consensus 205 s~~~~~~l~g~~v~~~~~~------d~~~Le~~l~~~~~~~~~------------------a~~~g~~G~--~g~g~~~~ 258 (442)
++..+++..|++++.++.+ |++++++.+++.+..... .|+.-++-+ .+.|..
T Consensus 88 ~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-- 165 (373)
T 3frk_A 88 ATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITEKTKAIIAVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSL-- 165 (373)
T ss_dssp HHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCTTEEEEEEECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCE--
T ss_pred HHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCCCCeEEEEECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCE--
Confidence 9999999999999988865 777777766542211000 111111111 111111
Q ss_pred cCCCCC--ceeEEEEecc--ccccC--CCcEEEcC-HHhHHHHHhh---CCc-------eeccCCCcHHHHHHHHHHHHH
Q 013461 259 CGVPVD--KIDIVTAAMG--HALAT--EGGFCTGS-ARVVDHQRLS---SSG-------YVFSASLPPYLASAAITAIDV 321 (442)
Q Consensus 259 ~~v~~~--~~diii~S~s--K~lg~--~GG~v~g~-~~~i~~l~~~---~~~-------~~~s~s~~p~~aaaa~aal~~ 321 (442)
++..+. -.|+++.||+ |++|. .||+++++ +++++.++.. +.. ..++..++++.++.+...++.
T Consensus 166 ~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~ 245 (373)
T 3frk_A 166 YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKY 245 (373)
T ss_dssp ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHT
T ss_pred ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHH
Confidence 111111 1478999977 99975 46888775 5566655432 110 112344578877776665554
Q ss_pred HhcChHHHHHHHHHHHHHHHhhccCCCceeecCCC---C--CEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeec
Q 013461 322 LEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE---S--PIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTS 396 (442)
Q Consensus 322 l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~---~--~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~ 396 (442)
+ ++..++.+++.+++.+.|.+++ +.+...+. . ..+.+... + ..++.+. |.++||.+++.
T Consensus 246 ~---~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~--------~---~~~l~~~-L~~~gI~v~~~ 309 (373)
T 3frk_A 246 L---DKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRSE--------K---RDELQKY-LNNNGIGTLIH 309 (373)
T ss_dssp H---HHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEES--------S---HHHHHHH-HHHTTBCCBCS
T ss_pred H---HHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEeC--------C---HHHHHHH-HHHCCCCcccC
Confidence 4 3467888889999999998874 55432211 1 22333321 1 2356664 56679999876
Q ss_pred cCccccc-----------CCCC-------CceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 397 KRSMLDK-----------CRLP-------VGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 397 ~~~~~~~-----------~~~~-------~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
.+..... ..+| ..||++++..+|++||++++++|+++..+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 310 YPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp CSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred cCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 5211110 0112 24999999999999999999999876543
No 154
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.83 E-value=9.6e-20 Score=187.53 Aligned_cols=315 Identities=10% Similarity=0.032 Sum_probs=195.3
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCC-------CcEEEEcchHHHH
Q 013461 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT-------PDSILYSYGLSTM 182 (442)
Q Consensus 110 ~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~-------e~~i~~~sG~~a~ 182 (442)
.+|||+.+++ ++. +|++++++.+++...+ +.. ...|..+++..+++.+++..+. ++++++++|++++
T Consensus 104 ~~i~l~~g~~-~~~-~~~~v~a~~~~~~~~~--y~~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al 177 (533)
T 3f6t_A 104 DAVNYCHTEL-GLN-RDKVVAEWVNGAVANN--YPV--PDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAI 177 (533)
T ss_dssp HHHHHHHHTT-CCC-HHHHHHHHHHHHHTCS--CCS--SSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHH
T ss_pred hheeccCCCC-CcC-CcHHHHHHHHHHHhCC--CCC--CcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHH
Confidence 5788877664 333 6888888888886522 111 1234555555565555544233 4677778888999
Q ss_pred Hhhhhh-----hccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC---------CHHHHHHHHHhhccccc-------c
Q 013461 183 FSAIPC-----FCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN---------DMDSLRNTLERVTADNK-------R 241 (442)
Q Consensus 183 ~~ai~a-----~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~---------d~~~Le~~l~~~~~~~~-------~ 241 (442)
..++.+ ++++||.|+++.++|.++..+++..|.+++.++.+ |+++|++.+...++... .
T Consensus 178 ~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPt 257 (533)
T 3f6t_A 178 VYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPT 257 (533)
T ss_dssp HHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTT
T ss_pred HHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCC
Confidence 999887 78999999999999999999999999998888753 67788777653221100 0
Q ss_pred ---------------c---ccccccccCCC-cc----ccccCCCCCceeEEEEeccccccCCC---cEEEcCHH-----h
Q 013461 242 ---------------S---NSFGVLGRSGR-GL----TEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSAR-----V 290 (442)
Q Consensus 242 ---------------a---~~~g~~G~~g~-g~----~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~-----~ 290 (442)
+ |++-++-+.-. ++ ....... .+.+++++||||++|+.| ||++++++ +
T Consensus 258 G~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~-~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~l 336 (533)
T 3f6t_A 258 SKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVV-PYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDDN 336 (533)
T ss_dssp CBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHS-GGGEEEEEESHHHHTCGGGCEEEEEEESSCHHHHH
T ss_pred ccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcC-CCCEEEEecCcccCCCcccceEEEEECcHHHHHHH
Confidence 1 12222111110 11 0111111 356799999999999877 99998776 4
Q ss_pred HHHH--------------------------------HhhCCceeccCCCcHHHHHHHHHHHHHHh----------cChHH
Q 013461 291 VDHQ--------------------------------RLSSSGYVFSASLPPYLASAAITAIDVLE----------ENPDL 328 (442)
Q Consensus 291 i~~l--------------------------------~~~~~~~~~s~s~~p~~aaaa~aal~~l~----------~~~~~ 328 (442)
++.+ +.. ..+.+++..+|.+++++..++..+. ...++
T Consensus 337 i~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~-~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~ 415 (533)
T 3f6t_A 337 IAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSI-GLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIA 415 (533)
T ss_dssp HHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTT-TTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHH
T ss_pred HHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHH-HHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHH
Confidence 3322 111 2233333334444443322333331 22457
Q ss_pred HHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh--------HHHHHHHHHHHHHhCCEEEeeccCcc
Q 013461 329 ITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND--------LQLLEDIADWALKEDGVFVVTSKRSM 400 (442)
Q Consensus 329 ~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~i~~~~L~~~GV~v~~~~~~~ 400 (442)
++.++++++++.+.|. + ++.+..+..+.++++.+.........+ .....+++.++++++||++.++..+.
T Consensus 416 ~~~~~~r~~~l~~~L~-~-~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~ 493 (533)
T 3f6t_A 416 RKLVSERYDQLHDAMQ-A-PKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFG 493 (533)
T ss_dssp HHHHHHHHHHHHHHHT-C-CCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEEC
T ss_pred HHHHHHHHHHHHHhcC-C-CccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccC
Confidence 7888999999999997 5 666554445556666653100000000 00123566667778899999887665
Q ss_pred cccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhh
Q 013461 401 LDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 401 ~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
.+ +..+|+++.. ++++|+++++++|+++++++.+
T Consensus 494 ~~----~~~iRls~a~-~~~e~i~~~i~~L~~~l~~~~~ 527 (533)
T 3f6t_A 494 AK----PGELRVSQAN-LPTEDYALIGKQVLELLKEYYE 527 (533)
T ss_dssp SS----TTEEEEESSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC----CCEEEEEEee-CCHHHHHHHHHHHHHHHHHHHH
Confidence 32 3469999954 6899999999999999987654
No 155
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.82 E-value=1.6e-18 Score=175.50 Aligned_cols=317 Identities=13% Similarity=0.095 Sum_probs=196.9
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhh
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI 186 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai 186 (442)
.|+.||||.+.... +.+++++.+++.. +. ..|+..+...++++++|+++|.++++++++|++|+..++
T Consensus 41 ~g~~ylD~~~~~~~-----~~v~~a~~~~~~~-~~------~~y~~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al 108 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-----NAMSDHQWAAMIT-GD------EAYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILF 108 (467)
T ss_dssp GGGCSEECSCSSSC-----CCEEHHHHHHHHT-CC------CCSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHH
T ss_pred CCceeeecccCcCC-----HHHHHHHHHHHhh-cc------cccccCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHH
Confidence 57789998654322 7888888888764 21 123445677899999999999999999999999999999
Q ss_pred hhhcc----CCCE---EEeCCCchHHHHHHHHhcCCeEEEec---------------CCCHHHHHHHHHhhc-ccccc--
Q 013461 187 PCFCK----KGDL---IVADEGVHWGIQNGLYLSRSTVVYFK---------------HNDMDSLRNTLERVT-ADNKR-- 241 (442)
Q Consensus 187 ~a~~~----~gd~---Vi~~~~~h~s~~~~~~l~g~~v~~~~---------------~~d~~~Le~~l~~~~-~~~~~-- 241 (442)
.++.+ +||. |++..+.|..+...+...|++++..+ ..|+++|++.+++.. +..+.
T Consensus 109 ~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi 188 (467)
T 1ax4_A 109 PVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIV 188 (467)
T ss_dssp HHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEE
T ss_pred HHHHHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEE
Confidence 99988 9997 77775444666777888888877542 127899999987532 11111
Q ss_pred --------------------------cccccccccCCCcc---c-------cccCCCC--------CceeEEEEeccccc
Q 013461 242 --------------------------SNSFGVLGRSGRGL---T-------EHCGVPV--------DKIDIVTAAMGHAL 277 (442)
Q Consensus 242 --------------------------a~~~g~~G~~g~g~---~-------~~~~v~~--------~~~diii~S~sK~l 277 (442)
.|++-++-+..+.. . .+.+++. ...|+++.|+||++
T Consensus 189 ~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~ 268 (467)
T 1ax4_A 189 STVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDP 268 (467)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTT
T ss_pred EeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccC
Confidence 22222222221111 1 2334421 23578889999999
Q ss_pred cCC-CcEEEcC-H-HhHHHHHhhCC---ceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCcee
Q 013461 278 ATE-GGFCTGS-A-RVVDHQRLSSS---GYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSI 351 (442)
Q Consensus 278 g~~-GG~v~g~-~-~~i~~l~~~~~---~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~ 351 (442)
|++ ||+++++ + ++++.++.... +....+..+...++++.++++...+ ++..++..++.+++.+.|.+ +++++
T Consensus 269 g~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~L~~-~~~~~ 346 (467)
T 1ax4_A 269 LLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE-EEYLHYRIGQVKYLGDRLRE-AGIPI 346 (467)
T ss_dssp CCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHH-TTCCB
T ss_pred CCCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHh-CCCCc
Confidence 986 7888887 6 78776643211 1101112233222222235554332 23455556788899999987 47777
Q ss_pred ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEee-ccCc-ccc--cC--C--CCCceEEEecC-CCCHHH
Q 013461 352 ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT-SKRS-MLD--KC--R--LPVGIRLFVSA-AHSEAD 422 (442)
Q Consensus 352 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~-~~~~-~~~--~~--~--~~~~iRi~~~~-~~t~ee 422 (442)
..+..+.++++.+..-............++++.+++++||.+.+ +... ... .+ . ....+||+++. .+|++|
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~ 426 (467)
T 1ax4_A 347 QYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDH 426 (467)
T ss_dssp CSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHH
T ss_pred ccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHH
Confidence 65556777777731100000000012346777654667999988 4321 100 00 0 01459999994 489999
Q ss_pred HHHHHHHHHHHHHHH
Q 013461 423 LVKACESLKRISAVV 437 (442)
Q Consensus 423 i~~~i~~l~~~~~~~ 437 (442)
+++++++|++++++.
T Consensus 427 i~~~~~~l~~~~~~~ 441 (467)
T 1ax4_A 427 MDYIADALIGLKEKF 441 (467)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988764
No 156
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.82 E-value=5.9e-20 Score=183.00 Aligned_cols=293 Identities=11% Similarity=0.056 Sum_probs=189.5
Q ss_pred CeeEEEeecCCCCCCC----CChHHHHHHHH-HHHhcCCCCCccCccccCcHHHHHHHHHHHhhh-C-------CCcEEE
Q 013461 108 GKEVVNFASANYLGLI----GHEKLLESCTS-ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-G-------TPDSIL 174 (442)
Q Consensus 108 G~~~id~~s~~~l~~~----~~p~v~ea~~~-~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~-g-------~e~~i~ 174 (442)
|+++|||++++|+++. .+|.+++++.+ .++. +. . ..|+......++++.+|+++ + .+++++
T Consensus 28 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~-~~-~----~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~ 101 (412)
T 1yaa_A 28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS-SY-N----HEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVIS 101 (412)
T ss_dssp CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT-TC-C----CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred CCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCc-cc-c----cCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEE
Confidence 5678999999886663 35788998888 7652 11 1 11222233467888888777 3 357777
Q ss_pred --EcchHHHHHhhh--hhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC-------CCHHHHHHHHHhhcccccc--
Q 013461 175 --YSYGLSTMFSAI--PCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-------NDMDSLRNTLERVTADNKR-- 241 (442)
Q Consensus 175 --~~sG~~a~~~ai--~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~-------~d~~~Le~~l~~~~~~~~~-- 241 (442)
+++|++++..++ ....++||.|+++.++|..+...++..|.+++.++. .|+++|++.+++.......
T Consensus 102 ~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 181 (412)
T 1yaa_A 102 VQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVL 181 (412)
T ss_dssp EEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEE
T ss_pred EeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEE
Confidence 888899998874 344579999999999999999999999999988876 2688898888753211110
Q ss_pred -------------------------ccccccccc--------CC-----CccccccCCCCCc--eeEEEEeccccccCCC
Q 013461 242 -------------------------SNSFGVLGR--------SG-----RGLTEHCGVPVDK--IDIVTAAMGHALATEG 281 (442)
Q Consensus 242 -------------------------a~~~g~~G~--------~g-----~g~~~~~~v~~~~--~diii~S~sK~lg~~G 281 (442)
.|+.-++-+ .+ ..+...... .++ .+++++||||++|+.|
T Consensus 182 ~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK~~~~~G 260 (412)
T 1yaa_A 182 HSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK-LSTVSPVFVCQSFAKNAGMYG 260 (412)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHH-TTTTCCEEEEEECTTTSCCGG
T ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhc-CCCCcceEEEeccCCCCCCcC
Confidence 122111110 00 011111111 122 5789999999998766
Q ss_pred ---cEEE--c-----CHH----hHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHh-------cChHHHHHHHHHHHHHH
Q 013461 282 ---GFCT--G-----SAR----VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-------ENPDLITKLKKNTAILR 340 (442)
Q Consensus 282 ---G~v~--g-----~~~----~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~-------~~~~~~~~l~~~~~~l~ 340 (442)
||++ + +++ +++.++..... .+ .+.+++.++++.++++... ..++++++++++++++.
T Consensus 261 lriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (412)
T 1yaa_A 261 ERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRS-EV-SNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALR 338 (412)
T ss_dssp GCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHT-TT-SSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEecCCCCCHHHHHHHHHHHHHHHhh-cc-CCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 7 566 77766542111 12 2235666666677776442 33567888999999999
Q ss_pred HhhccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCC
Q 013461 341 TGLSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAA 417 (442)
Q Consensus 341 ~~L~~~~---g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~ 417 (442)
+.|+++. ++++..+..+.++++.+ + . ..+ ..+++++||.+.+ .+||+++.
T Consensus 339 ~~L~~~~~~~~~~~~~~~~~~~~~~~~--~------~----~~~-~~~l~~~gi~v~~-------------~~Ris~~~- 391 (412)
T 1yaa_A 339 DHLVKLGTPGNWDHIVNQCGMFSFTGL--T------P----QMV-KRLEETHAVYLVA-------------SGRASIAG- 391 (412)
T ss_dssp HHHHHHTCSSCCTHHHHCCSSEEECCC--C------H----HHH-HHHHHHHCEECCT-------------TSEEEGGG-
T ss_pred HHHHhhCCCCCeeeeccCceEEEeeCC--C------H----HHH-HHHHHhCCEEecc-------------CcEEEEcc-
Confidence 9998763 26655433333433322 1 1 134 4456667999875 28999985
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 013461 418 HSEADLVKACESLKRISAV 436 (442)
Q Consensus 418 ~t~eei~~~i~~l~~~~~~ 436 (442)
+|++|+++++++|+++++.
T Consensus 392 ~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 392 LNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp CCTTTHHHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHh
Confidence 5899999999999988754
No 157
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.82 E-value=2.8e-18 Score=170.62 Aligned_cols=267 Identities=16% Similarity=0.114 Sum_probs=177.2
Q ss_pred cHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHH----HHHhcCCeEEEecCCCHHHH
Q 013461 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSL 228 (442)
Q Consensus 153 ~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~----~~~l~g~~v~~~~~~d~~~L 228 (442)
.+...++++.+|+++|.++++++++|++|+..++.+++++||.|+++.+.|.++.. .++..|.+++.++.+|++++
T Consensus 61 ~~~~~~l~~~ia~~~g~~~~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l 140 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEV 140 (404)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHH
T ss_pred ChHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHH
Confidence 56778999999999999999999999999999999999999999999999999887 67888999999999899999
Q ss_pred HHHHHhhcccccc---------------------c-ccccccccCCC--ccccccCCCCCceeEEEEeccccccCC----
Q 013461 229 RNTLERVTADNKR---------------------S-NSFGVLGRSGR--GLTEHCGVPVDKIDIVTAAMGHALATE---- 280 (442)
Q Consensus 229 e~~l~~~~~~~~~---------------------a-~~~g~~G~~g~--g~~~~~~v~~~~~diii~S~sK~lg~~---- 280 (442)
++.+++.++-... . |+.-++-+.-. +... ..+ ..++|+++.|+||++++.
T Consensus 141 ~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~-~~~-~~~~di~~~S~sK~~~~~g~ri 218 (404)
T 1e5e_A 141 KKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMIT-NPV-DFGVDVVVHSATKYINGHTDVV 218 (404)
T ss_dssp HHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTC-CGG-GGTCSEEEEETTTTTTCSSCCC
T ss_pred HHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhC-Ccc-ccCCEEEEEcCccccCCCCCCe
Confidence 8887643221100 3 33322211111 1100 001 125799999999999754
Q ss_pred CcEEEcCHHhHH-HHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccC-------------
Q 013461 281 GGFCTGSARVVD-HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI------------- 346 (442)
Q Consensus 281 GG~v~g~~~~i~-~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~------------- 346 (442)
|||+++++++++ .++..... .++...+|+.+.++.++++.+ +...++..++.+.+.+.|++.
T Consensus 219 ~G~~~~~~~~~~~~l~~~~~~-~~g~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~ 294 (404)
T 1e5e_A 219 AGLICGKADLLQQIRMVGIKD-ITGSVISPHDAWLITRGLSTL---NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFED 294 (404)
T ss_dssp CEEEEECHHHHHHHHHTCCCC-CCCCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSS
T ss_pred EEEEEECHHHHHHHHHHHHHh-CCCCCCCHHHHHHHHHhHhHH---HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCC
Confidence 599999999988 77654322 224456788877777777543 234455555655555555433
Q ss_pred -CCceeecC---CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccC---------cccc-----------
Q 013461 347 -HGLSIASN---PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR---------SMLD----------- 402 (442)
Q Consensus 347 -~g~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~---------~~~~----------- 402 (442)
|++++..+ ..++++.+.++. . .+.+.+++++.||++..... +...
T Consensus 295 ~p~~~~~~~~~~~~g~~~~~~~~~-------~----~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~ 363 (404)
T 1e5e_A 295 HEGHDIAKKQMRMYGSMITFILKS-------G----FEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEERE 363 (404)
T ss_dssp STTHHHHHHHCSSCCSEEEEEETT-------H----HHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHH
T ss_pred CccHHHHHhhCCCCceEEEEEeCC-------C----HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHH
Confidence 23322211 137788877732 1 11233467777884443211 1100
Q ss_pred cCCC-CCceEEEecCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013461 403 KCRL-PVGIRLFVSAAHSEADLVKACESLKRISAVVLRD 440 (442)
Q Consensus 403 ~~~~-~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~~ 440 (442)
.... +..+||+++. ||++++++.|+++++.++..
T Consensus 364 ~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~~~~ 398 (404)
T 1e5e_A 364 AAGITDGMIRLSVGI----EDADELIADFKQGLDALLRS 398 (404)
T ss_dssp HTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHHCC
T ss_pred hcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHHHHh
Confidence 0111 3459999986 89999999999999887754
No 158
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.82 E-value=8.4e-19 Score=169.76 Aligned_cols=274 Identities=12% Similarity=0.109 Sum_probs=187.4
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC---C--CcEEEEcchHHHHH
Q 013461 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG---T--PDSILYSYGLSTMF 183 (442)
Q Consensus 109 ~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g---~--e~~i~~~sG~~a~~ 183 (442)
.++|||.++.. .++.+|++++++.+++.+.+.. .|+.. ...++++.+|++++ . ++++++++|++++.
T Consensus 19 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~------~y~~~-~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~ 90 (335)
T 1uu1_A 19 RDKTYLALNEN-PFPFPEDLVDEVFRRLNSDALR------IYYDS-PDEELIEKILSYLDTDFLSKNNVSVGNGADEIIY 90 (335)
T ss_dssp CCSEEESSCCC-SSCCCHHHHHHHHHTCCGGGGG------SCCCS-SCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHH
T ss_pred CcceECCCCCC-CCCCCHHHHHHHHHHhhhhhhh------cCCCC-chHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHH
Confidence 46899987754 4556899999999887432211 11111 25789999999998 3 46777777889999
Q ss_pred hhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC-----CHHHH------------------------HHHHHh
Q 013461 184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSL------------------------RNTLER 234 (442)
Q Consensus 184 ~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-----d~~~L------------------------e~~l~~ 234 (442)
.++.++ ||.|+++ ++|.++...++..|.+++.++.+ |++++ +++++.
T Consensus 91 ~~~~~~---gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~v~l~~p~nptG~~~~~~~l~~l~~~ 166 (335)
T 1uu1_A 91 VMMLMF---DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFEREEIERILKT 166 (335)
T ss_dssp HHHHHS---SEEEECS-SSCHHHHHHHHHHTCEEEECCCCTTSCCCCCCCCTTEEEEEESSCTTTCCCCCHHHHHHHHHT
T ss_pred HHHHHh---CCcEEEC-CCcHHHHHHHHHcCCeEEEeccCCCCCCCHHHcCCCCEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 999888 8999999 99999988888888888877653 22222 111111
Q ss_pred hcccccccccccccccCCC-----ccccccCCCCCceeEEEEeccccccCCC---cEEEcCHHhHHHHHhhCCceeccCC
Q 013461 235 VTADNKRSNSFGVLGRSGR-----GLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSAS 306 (442)
Q Consensus 235 ~~~~~~~a~~~g~~G~~g~-----g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~~~~~s~s 306 (442)
+ ++-+..+... ...... +..+.+++++||||++|+.| ||+++++++++.++..... + +
T Consensus 167 -------~-~~li~De~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~--~--~ 232 (335)
T 1uu1_A 167 -------G-AFVALDEAYYEFHGESYVDFL--KKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLP--F--N 232 (335)
T ss_dssp -------T-CEEEEECTTHHHHCCCCGGGG--GTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHSCT--T--C
T ss_pred -------C-CEEEEECcchhhcchhHHHHh--hhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhcCC--C--C
Confidence 1 1111111000 111111 12346899999999998666 9999999999988765433 2 4
Q ss_pred CcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHH
Q 013461 307 LPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWAL 386 (442)
Q Consensus 307 ~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L 386 (442)
.+++.++++.++++..+..++.+++++++++++.+.|++. |+++. ++.++++++.++. ....++.+.++
T Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~---------~~~~~~~~~l~ 301 (335)
T 1uu1_A 233 VSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFVFMEK---------EEKERLLEHLR 301 (335)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECCT---------HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEc-CCCCeEEEEECCC---------CCHHHHHHHHH
Confidence 5777777777888764334567888999999999999887 77664 4467788877631 12345777655
Q ss_pred HhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHH
Q 013461 387 KEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 433 (442)
Q Consensus 387 ~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~ 433 (442)
++||.+.+. +..+|++++ +++|+++++++|+++
T Consensus 302 -~~gi~v~~~----------~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 302 -TKNVAVRSF----------REGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp -HHTEEEEEE----------TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred -HCCEEEEEC----------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 459999872 245999985 578999999998754
No 159
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.82 E-value=8.6e-19 Score=172.07 Aligned_cols=283 Identities=12% Similarity=0.142 Sum_probs=187.3
Q ss_pred HHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhh-ccCCCEEEeCCCchHHH
Q 013461 128 LLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHWGI 206 (442)
Q Consensus 128 v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~-~~~gd~Vi~~~~~h~s~ 206 (442)
+++++.+.+... .|+..+...++++.+|+++|.++++++++|++|+..++.++ .++||.|+++.++|.++
T Consensus 21 ~~~~~~~~~~~~---------~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~ 91 (374)
T 3uwc_A 21 YLNDLREFIKTA---------DFTLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIAS 91 (374)
T ss_dssp HHHHHHHHHHHT---------CCSSCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHH
T ss_pred HHHHHHHHHHcC---------CcccChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHH
Confidence 888888777652 13345778999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhcCCeEEEecCC-----CHHHHHHHHHhhcccccc------------------cccccccccC--CCccccccCC
Q 013461 207 QNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKR------------------SNSFGVLGRS--GRGLTEHCGV 261 (442)
Q Consensus 207 ~~~~~l~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~~------------------a~~~g~~G~~--g~g~~~~~~v 261 (442)
...++..|.+++.++.+ |++++++.+++.+..... .|+.-++-+. +.|.. ++.
T Consensus 92 ~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~--~~~ 169 (374)
T 3uwc_A 92 VGAIVQAGATPVLVDSENGYVIDPEKIEAAITDKTKAIMPVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGR--IND 169 (374)
T ss_dssp HHHHHHTTCEEEEECBCTTSSBCGGGTGGGCCTTEEEECCBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCE--ETT
T ss_pred HHHHHHcCCEEEEEecCCCCCcCHHHHHHhCCCCceEEEEeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCce--eCC
Confidence 99999999999999876 777777766542211000 2222111111 11111 111
Q ss_pred CC--CceeEEEEecc--ccccC--CCcEEEcC-HHhHHHHHhhCC-c---------eeccCCCcHHHHHHHHHHHHHHhc
Q 013461 262 PV--DKIDIVTAAMG--HALAT--EGGFCTGS-ARVVDHQRLSSS-G---------YVFSASLPPYLASAAITAIDVLEE 324 (442)
Q Consensus 262 ~~--~~~diii~S~s--K~lg~--~GG~v~g~-~~~i~~l~~~~~-~---------~~~s~s~~p~~aaaa~aal~~l~~ 324 (442)
.+ ...|+++.|++ |++|. .||+++++ +++.+.++.... + ..+...++++.++.+...++.+
T Consensus 170 ~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~-- 247 (374)
T 3uwc_A 170 KFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQL-- 247 (374)
T ss_dssp EETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGH--
T ss_pred eeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHH--
Confidence 11 11489999977 99976 26787764 567666554321 0 1122334677666654444333
Q ss_pred ChHHHHHHHHHHHHHHHhhccCCC-ceeecCCCC-----CEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccC
Q 013461 325 NPDLITKLKKNTAILRTGLSDIHG-LSIASNPES-----PIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR 398 (442)
Q Consensus 325 ~~~~~~~l~~~~~~l~~~L~~~~g-~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~ 398 (442)
++..++.+++.+++.+.|.++++ +.+...+.. ..+.+... + ..++.+. |.++||.++++..
T Consensus 248 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~l~~~-L~~~gi~v~~~~~ 314 (374)
T 3uwc_A 248 -ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVK--------Y---RDQLFQY-LKDNGIEVKIHYP 314 (374)
T ss_dssp -HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEET--------T---HHHHHHH-HHHTTBCCBCSCS
T ss_pred -HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcC--------C---HHHHHHH-HHHCCCccccCCC
Confidence 45778888899999999998866 665432211 12223221 1 2356665 5566999988752
Q ss_pred cccc-----------cCCCC-------CceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 399 SMLD-----------KCRLP-------VGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 399 ~~~~-----------~~~~~-------~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
.... ....| ..+|++++..+|++||++++++|++++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 315 IAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp SCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred CccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 1110 00111 34999999999999999999999998764
No 160
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.82 E-value=2.3e-19 Score=177.58 Aligned_cols=289 Identities=15% Similarity=0.094 Sum_probs=179.6
Q ss_pred eeEEEeecCCCCCC---C-CChHHHHHHHH-HHHhcCCCCCccCccccCcHHHHHHHHHHHhhh----C----CC--cEE
Q 013461 109 KEVVNFASANYLGL---I-GHEKLLESCTS-ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G----TP--DSI 173 (442)
Q Consensus 109 ~~~id~~s~~~l~~---~-~~p~v~ea~~~-~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~----g----~e--~~i 173 (442)
.++|||+.+.|++. . .+|.+++++.+ ++++.+.. ++....|. .++++.+|+++ + .+ +++
T Consensus 26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~--~y~~~~g~----~~lr~~la~~~~~~~~~~~~~~~~~i~ 99 (397)
T 3fsl_A 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGAS--LYLPMEGL----NCYRHAIAPLLFGADHPVLKQQRVATI 99 (397)
T ss_dssp SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCC--CCCCTTCC----HHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccc--cCCCCCch----HHHHHHHHHHHhcCCcccccccceEEE
Confidence 46899988854432 2 23799999999 88763321 11122344 45555555554 2 24 567
Q ss_pred EEcchHHHHHhhh--hhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC----C---CHHHHHHHHHhhcccccc---
Q 013461 174 LYSYGLSTMFSAI--PCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH----N---DMDSLRNTLERVTADNKR--- 241 (442)
Q Consensus 174 ~~~sG~~a~~~ai--~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~----~---d~~~Le~~l~~~~~~~~~--- 241 (442)
++++|++++..++ .+++++||.|+++.++|.++...++..|.+++.++. + |+++|++.+++..+....
T Consensus 100 ~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~ 179 (397)
T 3fsl_A 100 QTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLH 179 (397)
T ss_dssp EESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEEC
T ss_pred EcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEe
Confidence 7778889999885 456799999999999999999999999999999887 4 788999888743222111
Q ss_pred ------------------------cccccc----------ccc--CCCccccccCCCCCceeEEEEeccccccCCC---c
Q 013461 242 ------------------------SNSFGV----------LGR--SGRGLTEHCGVPVDKIDIVTAAMGHALATEG---G 282 (442)
Q Consensus 242 ------------------------a~~~g~----------~G~--~g~g~~~~~~v~~~~~diii~S~sK~lg~~G---G 282 (442)
.|+.-+ .+. ....+....+ ..+.+++++||||++|+.| |
T Consensus 180 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~~~~G~riG 257 (397)
T 3fsl_A 180 PCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIAS--AGLPALVSNSFSKIFSLYGERVG 257 (397)
T ss_dssp SSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHH--TTCCEEEEEECTTTTTCGGGCCE
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHh--cCCCEEEEecccccccCcCCCee
Confidence 111111 110 0011111111 2345799999999998766 8
Q ss_pred EEE---cCHHhHHHHHhhCCce---eccCCCcHHHHHHHHHHHHH-------HhcChHHHHHHHHHHHHHHHhhccCC--
Q 013461 283 FCT---GSARVVDHQRLSSSGY---VFSASLPPYLASAAITAIDV-------LEENPDLITKLKKNTAILRTGLSDIH-- 347 (442)
Q Consensus 283 ~v~---g~~~~i~~l~~~~~~~---~~s~s~~p~~aaaa~aal~~-------l~~~~~~~~~l~~~~~~l~~~L~~~~-- 347 (442)
|++ ++++.++.+......+ .++ +.+++.++++.++++. .+..++++++++++++++.+.|+++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 336 (397)
T 3fsl_A 258 GLSVMCEDAEAAGRVLGQLKATVRRNYS-SPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPE 336 (397)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHTTTS-SCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHhccC-CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 986 3566665443221111 111 2233444444344432 12235678889999999999998763
Q ss_pred -CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHH
Q 013461 348 -GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKA 426 (442)
Q Consensus 348 -g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~ 426 (442)
|+.+..+..+.++++.+. . +.+..+++++||++.++ -|++++. +|++||+++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~--------~-----~~~~~~l~~~gi~v~~g-------------~Ris~~~-~~~~~i~~~ 389 (397)
T 3fsl_A 337 RNFDYLLNQRGMFSYTGLS--------A-----AQVDRLREEFGVYLIAS-------------GRMCVAG-LNTANVQRV 389 (397)
T ss_dssp SCCTHHHHCCSSEEECCCC--------H-----HHHHHHHHTTCEECCTT-------------CEEEGGG-CCTTTHHHH
T ss_pred CCceeecCCceEEEecCCC--------H-----HHHHHHHHhCCEEECCC-------------CeEEEEe-cCHhhHHHH
Confidence 566554434555554431 1 22344677789998753 2888864 577889999
Q ss_pred HHHHHHH
Q 013461 427 CESLKRI 433 (442)
Q Consensus 427 i~~l~~~ 433 (442)
+++|+++
T Consensus 390 ~~~l~~~ 396 (397)
T 3fsl_A 390 AKAFAAV 396 (397)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999875
No 161
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.82 E-value=2.3e-19 Score=179.39 Aligned_cols=312 Identities=8% Similarity=-0.022 Sum_probs=193.7
Q ss_pred eEEEeecCCCCC--CCCChHHHHHHH--HHHHhcCCCCCccCccc-cCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHH
Q 013461 110 EVVNFASANYLG--LIGHEKLLESCT--SALEKYGVGSCGPRGFY-GTIDVHLDCEARIAKFLGTP--DSILYSYGLSTM 182 (442)
Q Consensus 110 ~~id~~s~~~l~--~~~~p~v~ea~~--~~l~~~g~~~~~~~~~~-g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~ 182 (442)
..|||+.+.+-. +..+|.+++++. +.++ .+.. ...| +......+|++.+|++++.+ +++++++|++++
T Consensus 26 ~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~-~~~~----~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al 100 (423)
T 3ez1_A 26 LNLNMQRGQPADADFDLSNGLLTVLGAEDVRM-DGLD----LRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLEL 100 (423)
T ss_dssp CCEESCCCCCCHHHHHTTGGGGGSCCGGGCEE-TTEE----TTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHH
T ss_pred ceEecCCCCCChHhCCCcHHHHHHHhhhHHhh-cchh----hhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHH
Confidence 358887665311 334567888775 4433 1211 1223 33444579999999999853 567777777888
Q ss_pred H--hhhhhhcc--C---------CCEEEeCCCchHHHHHHHHhcCCeEEEecCC----CHHHHHHHHHh--hccc-----
Q 013461 183 F--SAIPCFCK--K---------GDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLER--VTAD----- 238 (442)
Q Consensus 183 ~--~ai~a~~~--~---------gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~----d~~~Le~~l~~--~~~~----- 238 (442)
. .++.++++ + ||.|+++.++|..+...++..|.+++.++.+ |+++|++.+++ .+..
T Consensus 101 ~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~ 180 (423)
T 3ez1_A 101 QGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSDGPDVDAVERLAGTDPSVKGILFVP 180 (423)
T ss_dssp HHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETTEECHHHHHHHHHSCTTEEEEEECS
T ss_pred HHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCCCCCHHHHHHHHhhCCCceEEEECC
Confidence 7 88888887 7 5999999999999999999999999888753 78899988852 1110
Q ss_pred ---ccc---------------c-ccccc--cccCCCc-----------cccccCC----CCCceeEEEEeccccc--cCC
Q 013461 239 ---NKR---------------S-NSFGV--LGRSGRG-----------LTEHCGV----PVDKIDIVTAAMGHAL--ATE 280 (442)
Q Consensus 239 ---~~~---------------a-~~~g~--~G~~g~g-----------~~~~~~v----~~~~~diii~S~sK~l--g~~ 280 (442)
++. + +..++ +-+.-.+ ....+.+ +..+.+++++||||++ |..
T Consensus 181 ~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r 260 (423)
T 3ez1_A 181 TYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAG 260 (423)
T ss_dssp SSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSS
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcc
Confidence 000 2 22221 1111000 0000110 1245789999999974 233
Q ss_pred CcEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHH-H----hcChHHHHHHHHHHHHHHHhh----ccCC-Cce
Q 013461 281 GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV-L----EENPDLITKLKKNTAILRTGL----SDIH-GLS 350 (442)
Q Consensus 281 GG~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~-l----~~~~~~~~~l~~~~~~l~~~L----~~~~-g~~ 350 (442)
.||+++++++++.++.......+ +.+++.+.++.++++. . +...+.++.++++.+.+.+.| .++. ++.
T Consensus 261 ~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 338 (423)
T 3ez1_A 261 LGFVASSEDNIRWLSKYLGAQSI--GPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYAT 338 (423)
T ss_dssp CEEEEECHHHHHHHHHHHHHSCS--CCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEE
T ss_pred eEEEEeCHHHHHHHHHHHhhhcc--CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceE
Confidence 49999999999988765333222 3466666666666654 1 112234455555555555554 3342 266
Q ss_pred eecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEee-ccCcccccCCCCCceEEEecCCCCHHHHHHHHHH
Q 013461 351 IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT-SKRSMLDKCRLPVGIRLFVSAAHSEADLVKACES 429 (442)
Q Consensus 351 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~-~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~ 429 (442)
+..+..+.++++.++.. + ..++.+ .|+++||.+.+ +..+.......+..+||+++.. |++|+++++++
T Consensus 339 ~~~p~~g~~~~~~~~~~------~---~~~~~~-~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~ 407 (423)
T 3ez1_A 339 WTLPKGGYFISLDTAEP------V---ADRVVK-LAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQV 407 (423)
T ss_dssp ECCCSBSSCEEEEESSS------C---HHHHHH-HHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHH
T ss_pred EeCCCccEEEEEECCCC------c---HHHHHH-HHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHH
Confidence 65555677888888532 1 224555 46677999998 4433211111235699999765 99999999999
Q ss_pred HHHHHHHHhh
Q 013461 430 LKRISAVVLR 439 (442)
Q Consensus 430 l~~~~~~~~~ 439 (442)
|+++++++..
T Consensus 408 l~~~l~~~~~ 417 (423)
T 3ez1_A 408 VAACIRLATE 417 (423)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 162
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.82 E-value=1.2e-19 Score=181.80 Aligned_cols=312 Identities=11% Similarity=-0.042 Sum_probs=191.0
Q ss_pred eEEEeecCCCC-CCC-CChHHHHHH--HHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCC--CcEEEEcchHHHH-
Q 013461 110 EVVNFASANYL-GLI-GHEKLLESC--TSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--PDSILYSYGLSTM- 182 (442)
Q Consensus 110 ~~id~~s~~~l-~~~-~~p~v~ea~--~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~--e~~i~~~sG~~a~- 182 (442)
..|||+.+.+- ... .++.+++++ .+++++.+.. ...|+......+|++.||++++. +++++++++++++
T Consensus 34 ~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~ 109 (427)
T 3ppl_A 34 LKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTD----VRNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIM 109 (427)
T ss_dssp CCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCB----TTSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHH
T ss_pred ceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchh----hcCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHH
Confidence 35788755321 111 123455555 4444432211 12344444567999999999985 4566666777888
Q ss_pred -Hhhhhhhcc--C----------CCEEEeCCCchHHHHHHHHhcCCeEEEecCC----CHHHHHHHHHh-hcc-------
Q 013461 183 -FSAIPCFCK--K----------GDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLER-VTA------- 237 (442)
Q Consensus 183 -~~ai~a~~~--~----------gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~----d~~~Le~~l~~-~~~------- 237 (442)
..++.++++ + ||.|+++.++|..+...++..|.+++.++.+ |+++|++.++. .++
T Consensus 110 ~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~ 189 (427)
T 3ppl_A 110 FDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPV 189 (427)
T ss_dssp HHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECCS
T ss_pred HHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCC
Confidence 478888877 6 9999999999999999999999999888753 78888887742 111
Q ss_pred -cccc---------------c-ccccc--cccCCC--------c--cccccCC----CCCceeEEEEecccccc--CCCc
Q 013461 238 -DNKR---------------S-NSFGV--LGRSGR--------G--LTEHCGV----PVDKIDIVTAAMGHALA--TEGG 282 (442)
Q Consensus 238 -~~~~---------------a-~~~g~--~G~~g~--------g--~~~~~~v----~~~~~diii~S~sK~lg--~~GG 282 (442)
.++. + ...++ +-+.-. + ....+++ ...+.+++++||||+++ ...|
T Consensus 190 ~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G 269 (427)
T 3ppl_A 190 FSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVS 269 (427)
T ss_dssp SCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCE
T ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEE
Confidence 0000 2 22221 111100 0 0011111 12467899999999952 2349
Q ss_pred EEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHH---H-hcChHHHHHHHHHHHHHHHhhcc----CCCceeecC
Q 013461 283 FCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV---L-EENPDLITKLKKNTAILRTGLSD----IHGLSIASN 354 (442)
Q Consensus 283 ~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~---l-~~~~~~~~~l~~~~~~l~~~L~~----~~g~~~~~~ 354 (442)
|+++++++++.++.......+ +.+++.+.++.++++. + +...+.++.++++.+.+.+.|.+ ++++.+..+
T Consensus 270 ~~~~~~~l~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p 347 (427)
T 3ppl_A 270 FFLTSAENRKWYTGHAGIRGI--GPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVP 347 (427)
T ss_dssp EEECCHHHHHHHHHHHHHHCS--CCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCC
T ss_pred EEEcCHHHHHHHHHHhhcccC--CCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCC
Confidence 999999999888655332222 3355555555555543 1 12234566667777777666643 334666555
Q ss_pred CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEee-ccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHH
Q 013461 355 PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT-SKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 433 (442)
Q Consensus 355 ~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~-~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~ 433 (442)
..+.++++.++.. + ..++.+. |.++||.+.+ +..+.......+..+||+++.. |+++|++++++|+++
T Consensus 348 ~~g~~~~~~~~~~------~---~~~~~~~-l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~ 416 (427)
T 3ppl_A 348 AGGYFISLDVVPG------T---ASRVAEL-AKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATC 416 (427)
T ss_dssp SBSSCEEEECSTT------C---HHHHHHH-HHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHH
T ss_pred CccEEEEEECCcc------h---HHHHHHH-HHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHH
Confidence 5677888887431 1 2356654 5667999998 3333211111245699999764 999999999999999
Q ss_pred HHHHh
Q 013461 434 SAVVL 438 (442)
Q Consensus 434 ~~~~~ 438 (442)
++++.
T Consensus 417 l~~~~ 421 (427)
T 3ppl_A 417 VLLAA 421 (427)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 163
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.82 E-value=2.9e-18 Score=171.53 Aligned_cols=301 Identities=17% Similarity=0.195 Sum_probs=194.0
Q ss_pred EeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccC-cHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhcc
Q 013461 113 NFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGT-IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCK 191 (442)
Q Consensus 113 d~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~-~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~ 191 (442)
||..+. ..+..+|++++++.++++. +. |+. .+...++++.+|+++|.++++++++|++++..++.++.
T Consensus 20 ~l~~~~-p~~~~p~~~~~a~~~~~~~-~~--------y~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~- 88 (424)
T 2po3_A 20 PLLVGR-PNRIDRARLYERLDRALDS-QW--------LSNGGPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG- 88 (424)
T ss_dssp CEETTC-CCCCCHHHHHHHHHHHHHH-TC--------CSSSCHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT-
T ss_pred cccccC-CCCCChHHHHHHHHHHHhc-CC--------cccCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC-
Confidence 455443 2344467999999998875 21 333 56778999999999999999999999999999999885
Q ss_pred CCCEEEeCCCchHHHHHHHHhcCCeEEEecCC------CHHHHHHHHHhhcccccc------------------cccccc
Q 013461 192 KGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKR------------------SNSFGV 247 (442)
Q Consensus 192 ~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~------d~~~Le~~l~~~~~~~~~------------------a~~~g~ 247 (442)
+||.|+++.+.|.++...+...|.+++.++.+ |+++|++.+++.+..... .|+.-+
T Consensus 89 ~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~tG~~~~l~~i~~la~~~~~~l 168 (424)
T 2po3_A 89 LTGEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGVHLWGRPCAADQLRKVADEHGLRL 168 (424)
T ss_dssp CCSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEECGGGCCCCHHHHHHHHHHTTCEE
T ss_pred CCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEECCCCCcCCHHHHHHHHHHcCCEE
Confidence 78999999999999999999999999988764 566776655432111000 111111
Q ss_pred cccC--CCccc---cccCCCCCceeEEEEecc--ccccC-CCcEEEcC-HHhHHHHHhhCC-c----ee-----ccCCCc
Q 013461 248 LGRS--GRGLT---EHCGVPVDKIDIVTAAMG--HALAT-EGGFCTGS-ARVVDHQRLSSS-G----YV-----FSASLP 308 (442)
Q Consensus 248 ~G~~--g~g~~---~~~~v~~~~~diii~S~s--K~lg~-~GG~v~g~-~~~i~~l~~~~~-~----~~-----~s~s~~ 308 (442)
+-+. +.|.. ...+ .-.|+++.||| |+++. .|||++++ +++++.++.... + +. ....++
T Consensus 169 i~Dea~~~g~~~~~~~~~---~~~di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~ 245 (424)
T 2po3_A 169 YFDAAHALGCAVDGRPAG---SLGDAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMS 245 (424)
T ss_dssp EEECTTCTTCEETTEETT---SSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCC
T ss_pred EEECccccCCeECCeecc---cccCEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcC
Confidence 1110 00111 0111 11268999998 87754 46999998 788887654211 1 10 122456
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCC-C--C--CEEEEEecCCC-CCchhhHHHHHHHH
Q 013461 309 PYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP-E--S--PIVFLILEKST-GSMKNDLQLLEDIA 382 (442)
Q Consensus 309 p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~-~--~--~i~~~~~~~~~-~~~~~~~~~~~~i~ 382 (442)
++.+++++..++.+ ++..++.+++.+++.+.|.+++++++...+ . . .++.+.++... + ....++.
T Consensus 246 ~~~aa~~l~~~~~~---~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~l~ 316 (424)
T 2po3_A 246 EAAAAMGLTSLDAF---PEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTG------IHRDLVM 316 (424)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHS------SCHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccch------hhHHHHH
Confidence 77777666555544 346778888899999999887788775422 1 1 45556653100 0 0123566
Q ss_pred HHHHHhCCEEEeeccCccccc---------CCCCCc-------eEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 383 DWALKEDGVFVVTSKRSMLDK---------CRLPVG-------IRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 383 ~~~L~~~GV~v~~~~~~~~~~---------~~~~~~-------iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
+. |.++||.+.+...+.... ...|.. +|++++..+|++|+++++++|++++++.
T Consensus 317 ~~-L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~ 386 (424)
T 2po3_A 317 EV-LKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRG 386 (424)
T ss_dssp HH-HHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 64 566799998743211110 001122 6677679999999999999999987654
No 164
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.81 E-value=2.3e-19 Score=180.93 Aligned_cols=296 Identities=9% Similarity=0.032 Sum_probs=185.8
Q ss_pred CCee-EEEeecCCCCCCCCChHHHHHHHHHHHhcC----CCCCccCccccCcHHHHHHHHHHHhhh-CC-------CcEE
Q 013461 107 SGKE-VVNFASANYLGLIGHEKLLESCTSALEKYG----VGSCGPRGFYGTIDVHLDCEARIAKFL-GT-------PDSI 173 (442)
Q Consensus 107 ~G~~-~id~~s~~~l~~~~~p~v~ea~~~~l~~~g----~~~~~~~~~~g~~~~~~~le~~lA~~~-g~-------e~~i 173 (442)
+++. .|||+.+.|+++.++|.+.+++.+++++.. .+..++....| ..++++.+++++ |. ++++
T Consensus 46 ~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G----~~~lr~~ia~~l~g~~~~~~~~~~i~ 121 (448)
T 3meb_A 46 DTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAG----FPLFLEAAQFLMFGKDSKAAQEGRIA 121 (448)
T ss_dssp CCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred CCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcc----hHHHHHHHHHHhcCCCccccCcCcEE
Confidence 3443 799999999888777666666666633321 12222222223 467888888876 74 3667
Q ss_pred E--EcchHHHHHh--hhhhhccCCCEEEeCCCchHHHHHHHH----hcCCeEEEecC---C-----CHHHHHHHHHhhcc
Q 013461 174 L--YSYGLSTMFS--AIPCFCKKGDLIVADEGVHWGIQNGLY----LSRSTVVYFKH---N-----DMDSLRNTLERVTA 237 (442)
Q Consensus 174 ~--~~sG~~a~~~--ai~a~~~~gd~Vi~~~~~h~s~~~~~~----l~g~~v~~~~~---~-----d~~~Le~~l~~~~~ 237 (442)
+ +++|++|+.. .+.+++++||.|+++.++|.++...++ ..|.+++.++. + |++++++.+++..+
T Consensus 122 ~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~ 201 (448)
T 3meb_A 122 SCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPE 201 (448)
T ss_dssp EEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCT
T ss_pred EEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCC
Confidence 7 8888999876 556778899999999999999999998 89999888876 2 67788887775322
Q ss_pred cccc---------------------------ccccccccc--------CC-----CccccccCCCCCceeEEEEeccccc
Q 013461 238 DNKR---------------------------SNSFGVLGR--------SG-----RGLTEHCGVPVDKIDIVTAAMGHAL 277 (442)
Q Consensus 238 ~~~~---------------------------a~~~g~~G~--------~g-----~g~~~~~~v~~~~~diii~S~sK~l 277 (442)
.... .|+.-++-+ .+ .++....+ ..+.+++++||||++
T Consensus 202 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~ 279 (448)
T 3meb_A 202 KSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVD--AGVEVLVAQSFSKNF 279 (448)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHH--TTCCEEEEEECTTTS
T ss_pred CcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhh--cCCcEEEEecccccC
Confidence 1111 111111100 00 00000001 123468899999999
Q ss_pred cCCC---cEE--Ec---------CH----HhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHH-------hcChHHHHHH
Q 013461 278 ATEG---GFC--TG---------SA----RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-------EENPDLITKL 332 (442)
Q Consensus 278 g~~G---G~v--~g---------~~----~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l-------~~~~~~~~~l 332 (442)
|+.| ||+ ++ ++ ++++.+...... .++ +.|.+.+.++.++++.. +..+++++++
T Consensus 280 g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~-~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~ 357 (448)
T 3meb_A 280 GLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRK-TWS-MSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARI 357 (448)
T ss_dssp CCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHT-TTS-SCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhc-ccC-CccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 9877 887 55 45 566655432111 111 23455555555555321 2234577889
Q ss_pred HHHHHHHHHhhccC--CC------ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccC
Q 013461 333 KKNTAILRTGLSDI--HG------LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKC 404 (442)
Q Consensus 333 ~~~~~~l~~~L~~~--~g------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~ 404 (442)
+++++++.+.|+++ ++ +.+..+..+.+.+..+. .+++..+++++||++.++.
T Consensus 358 ~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------------~~~~~~ll~~~gV~v~~G~------- 417 (448)
T 3meb_A 358 HRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT-------------PEHVDYLKEKWSIYLVKAG------- 417 (448)
T ss_dssp HHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC-------------HHHHHHHHHHHCEEECSGG-------
T ss_pred HHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC-------------HHHHHHHHHhCCEEEeCCC-------
Confidence 99999999999876 44 44433334444443331 1355566677799997642
Q ss_pred CCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 405 RLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 405 ~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
.||++.. +|+++|++++++|++++++
T Consensus 418 -----gRis~a~-~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 418 -----GRMSMCG-LTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp -----GEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred -----cEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence 4999864 5778899999999998864
No 165
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.81 E-value=1.2e-19 Score=181.89 Aligned_cols=306 Identities=10% Similarity=-0.041 Sum_probs=197.4
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccc-cCcHHHHHHHHHHHhhhC--------CCcEEEEcc
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFY-GTIDVHLDCEARIAKFLG--------TPDSILYSY 177 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~-g~~~~~~~le~~lA~~~g--------~e~~i~~~s 177 (442)
+...+|||+.+.. .+..++.+++++.+++.+.+....++.... | .....+|++.||++++ .++++++++
T Consensus 54 ~~~~~i~l~~g~~-~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G-~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G 131 (427)
T 2hox_A 54 IQGCSADVASGDG-LFLEEYWKQHKEASAVLVSPWHRMSYFFNPVS-NFISFELEKTIKELHEVVGNAAAKDRYIVFGVG 131 (427)
T ss_dssp CTTCCEECCSCCC-GGGHHHHTTSHHHHCEEECTTTTCSSSCSSCC-TTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESH
T ss_pred CCCceEEecCcCC-CCCCCHHHHHhHHhhhhcCCcccccCCCCCCC-ccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCC
Confidence 4556899977653 344456777787777643332211111111 3 1225788888888875 245677777
Q ss_pred hHHHHHhhhhhh--------ccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCCCHHHHHHHHHhhcccccc---ccccc
Q 013461 178 GLSTMFSAIPCF--------CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKR---SNSFG 246 (442)
Q Consensus 178 G~~a~~~ai~a~--------~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~d~~~Le~~l~~~~~~~~~---a~~~g 246 (442)
+++++..++.++ +++||.|+++.++|..+...++..|++++.+. .|+++|++.++..++.... .+-.|
T Consensus 132 ~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~-~d~~~l~~~~~~~~k~v~l~~p~NPtG 210 (427)
T 2hox_A 132 VTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWA-GNAANYVNVSNPEQYIEMVTSPNNPEG 210 (427)
T ss_dssp HHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEE-EEGGGGTTCSCGGGEEEEEESSCTTTC
T ss_pred HHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeeeec-CCHHHHHHhhcCCceEEEEcCCCCCcc
Confidence 789999999999 89999999999999999999999999887665 3677777655432111000 11111
Q ss_pred cc------------ccCCC-ccccccCCCCCceeEEEEeccccccCCC---cEEEc-CHHhHHHHHhhCCceeccCCCcH
Q 013461 247 VL------------GRSGR-GLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPP 309 (442)
Q Consensus 247 ~~------------G~~g~-g~~~~~~v~~~~~diii~S~sK~lg~~G---G~v~g-~~~~i~~l~~~~~~~~~s~s~~p 309 (442)
.+ ...-. .......+. .+.||+++||||.+|+.| ||+++ ++++++.++..... ...+.++
T Consensus 211 ~~~~~~l~~~~~i~d~~~~~~~~s~~~~~-~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~--~~~~~~~ 287 (427)
T 2hox_A 211 LLRHAVIKGCKSIYDMVYYWPHYTPIKYK-ADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTK--NTEGTPR 287 (427)
T ss_dssp CCCCCSSTTCEEEEECTTCSTTTSCCCSC-BCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHH--HTSSCCH
T ss_pred cccHHHHcCCCEEEeecccCCCCCccccC-CCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHh--cCCCCCH
Confidence 11 00000 000011222 457999999999998776 99999 58998888764321 1223455
Q ss_pred HHHHHHHHHHHHHh-----------c-ChHHHHHHHHHHHHHHHhhccCCCcee--e------------cCCCCCEEEEE
Q 013461 310 YLASAAITAIDVLE-----------E-NPDLITKLKKNTAILRTGLSDIHGLSI--A------------SNPESPIVFLI 363 (442)
Q Consensus 310 ~~aaaa~aal~~l~-----------~-~~~~~~~l~~~~~~l~~~L~~~~g~~~--~------------~~~~~~i~~~~ 363 (442)
+.+.++.++|+... + ....+++++++.+++.+.|++.+|+.+ . .+..+.++++.
T Consensus 288 ~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~ 367 (427)
T 2hox_A 288 ETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVK 367 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEE
T ss_pred HHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEE
Confidence 55555566665421 1 134678889999999999988767664 1 12236678888
Q ss_pred ecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 364 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
+..+ ..++++.+++++||.+.++..+.. .+..+||++.. +++++++++++|++++
T Consensus 368 ~~~~----------~~~~~~~ll~~~gI~v~pg~~f~~----~~~~~Ris~~~--~~e~l~~~l~~l~~~~ 422 (427)
T 2hox_A 368 CEWE----------EDKDCYQTFQNGRINTQNGVGFEA----SSRYVRLSLIK--TQDDFDQLMYYLKDMV 422 (427)
T ss_dssp ECSG----------GGCSHHHHHHHTTEECEEGGGGTS----CTTEEEEECSS--CHHHHHHHHHHHHHHH
T ss_pred CCCc----------HHHHHHHHHHHCCEEEcCCCccCC----CCCEEEEEecC--CHHHHHHHHHHHHHHH
Confidence 7431 124566667677999999876532 13569999984 8999999999998875
No 166
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.81 E-value=1.8e-18 Score=169.60 Aligned_cols=292 Identities=14% Similarity=0.100 Sum_probs=190.4
Q ss_pred CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhh---ccCCCEEEeCC
Q 013461 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF---CKKGDLIVADE 200 (442)
Q Consensus 124 ~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~---~~~gd~Vi~~~ 200 (442)
.+|++++++.+++++ +..+ ..+...++++.+|+++|.++++++++|++|+..++.++ .++||.|+++.
T Consensus 11 ~~~~v~~a~~~~~~~-~~~~--------~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~ 81 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNS-KQLT--------QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTP 81 (375)
T ss_dssp CCHHHHHHHHHHHTS-SCCS--------SSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECS
T ss_pred CCHHHHHHHHHHHHc-Cccc--------CChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECC
Confidence 478999999999875 2111 13567899999999999999999999999999999999 89999999999
Q ss_pred CchHHHHHHHHhcCCeEEEecCC-----CHHHHHHHHHhhcccccccccccc------------------ccc--CCCcc
Q 013461 201 GVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRSNSFGV------------------LGR--SGRGL 255 (442)
Q Consensus 201 ~~h~s~~~~~~l~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~~a~~~g~------------------~G~--~g~g~ 255 (442)
++|.++..++...|.+++.++.+ |+++|++.+++.+......|..|. +-+ .+.|.
T Consensus 82 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~ 161 (375)
T 2fnu_A 82 ISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGS 161 (375)
T ss_dssp SSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTC
T ss_pred CccHhHHHHHHHCCCEEEEeccCCCCCCCHHHHHhhcCcCceEEEEeCCcCCccCHHHHHHHHHHcCCEEEEECccccCC
Confidence 99999999999999999988764 667776665432211000111111 100 01111
Q ss_pred c---cccCCCCCceeEEEEecc--ccccCCCcEEEc-C-HHhHHHHHhhCC-c-------------eeccCCCcHHHHHH
Q 013461 256 T---EHCGVPVDKIDIVTAAMG--HALATEGGFCTG-S-ARVVDHQRLSSS-G-------------YVFSASLPPYLASA 314 (442)
Q Consensus 256 ~---~~~~v~~~~~diii~S~s--K~lg~~GG~v~g-~-~~~i~~l~~~~~-~-------------~~~s~s~~p~~aaa 314 (442)
. ...+. . .|+++.||| |.+|.+.|+++. + +++++.++.... + ..+...++++.+++
T Consensus 162 ~~~~~~~~~--~-~~i~~~s~s~~K~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 238 (375)
T 2fnu_A 162 EYQNKKVGG--F-ALASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSAL 238 (375)
T ss_dssp EETTEETTS--S-SSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHH
T ss_pred eECCeeccc--c-CCeEEEeCCCCCCccccCceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHH
Confidence 0 11111 0 167788888 999863255554 3 778777654321 1 11222456777666
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCC----CC-CEEEEEecCCCCCchhhHHHHHHHHHHHHHhC
Q 013461 315 AITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP----ES-PIVFLILEKSTGSMKNDLQLLEDIADWALKED 389 (442)
Q Consensus 315 a~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~----~~-~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~ 389 (442)
+...++.+ ++..++.+++++++.+.|++++|+++..++ .+ .++++.++.. + .. ...++.+. |.++
T Consensus 239 ~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~--~~~~l~~~-L~~~ 308 (375)
T 2fnu_A 239 GLSQLKKA---PFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQK-F---FT--CKKLILES-LHKR 308 (375)
T ss_dssp HHHHHTTH---HHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGG-G---GG--GHHHHHHH-HHHT
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCcc-c---cc--hHHHHHHH-HHHC
Confidence 65544333 457888899999999999988788775431 22 3446666321 0 00 13457765 5567
Q ss_pred CEEEeeccCcccc---------cCCCC-------CceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 390 GVFVVTSKRSMLD---------KCRLP-------VGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 390 GV~v~~~~~~~~~---------~~~~~-------~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
||.++....+... ....| ..+||+++..+|++|+++++++|+++++++
T Consensus 309 gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 309 GILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp TEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999843222100 00011 349999999999999999999999987654
No 167
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.81 E-value=6.6e-19 Score=177.18 Aligned_cols=316 Identities=13% Similarity=0.096 Sum_probs=192.2
Q ss_pred eeEE-EeecCCCCCCCCChHHHHHHHHHHHhcCCC-------C--CccCccccCcHHHHHHHHHHHhhh--------CCC
Q 013461 109 KEVV-NFASANYLGLIGHEKLLESCTSALEKYGVG-------S--CGPRGFYGTIDVHLDCEARIAKFL--------GTP 170 (442)
Q Consensus 109 ~~~i-d~~s~~~l~~~~~p~v~ea~~~~l~~~g~~-------~--~~~~~~~g~~~~~~~le~~lA~~~--------g~e 170 (442)
.++| ||+.+++.. .|.+.+++.+++.+.... . ..+...|+......++++.+|+++ +.+
T Consensus 31 ~~~i~~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~ 107 (444)
T 3if2_A 31 DQPVNMLGGGNPAK---IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSE 107 (444)
T ss_dssp SSCCEECSCCCCCC---CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG
T ss_pred chhhhccCCCCCCc---ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHH
Confidence 3567 887665322 466777777776653211 1 111123444445677888888876 246
Q ss_pred cEEEEcchHHHHHhhhhhhccCCC--------------EEEe-CCCchHHHHHH------HHhcCCeEEEecC-------
Q 013461 171 DSILYSYGLSTMFSAIPCFCKKGD--------------LIVA-DEGVHWGIQNG------LYLSRSTVVYFKH------- 222 (442)
Q Consensus 171 ~~i~~~sG~~a~~~ai~a~~~~gd--------------~Vi~-~~~~h~s~~~~------~~l~g~~v~~~~~------- 222 (442)
+++++++|++++..++.+++++|| .|++ ..++|..+... +...+..++.++.
T Consensus 108 ~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 187 (444)
T 3if2_A 108 NIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFF 187 (444)
T ss_dssp GEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEE
T ss_pred HEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccCcc
Confidence 788889999999999999999998 6665 47777766543 2334566666652
Q ss_pred ---CCHHHHHHHHHhhcccccc---------------------------cccccccccCCCc--c--ccccCC--CCCce
Q 013461 223 ---NDMDSLRNTLERVTADNKR---------------------------SNSFGVLGRSGRG--L--TEHCGV--PVDKI 266 (442)
Q Consensus 223 ---~d~~~Le~~l~~~~~~~~~---------------------------a~~~g~~G~~g~g--~--~~~~~v--~~~~~ 266 (442)
.|+++|++.++..++..+. .|++-++-+.-.+ . ..+.+. ...+.
T Consensus 188 ~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 267 (444)
T 3if2_A 188 KYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNN 267 (444)
T ss_dssp EEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTT
T ss_pred ccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCC
Confidence 3788888875443322111 2222221111111 0 011111 11467
Q ss_pred eEEEEeccccccCCC---cEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHh---cChH-HHHHHHHHHHHH
Q 013461 267 DIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE---ENPD-LITKLKKNTAIL 339 (442)
Q Consensus 267 diii~S~sK~lg~~G---G~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~---~~~~-~~~~l~~~~~~l 339 (442)
+++++||||+ ++.| ||+++++++++.++.....+.++. +++.++++.+.++..+ ...+ +++.++++.+.+
T Consensus 268 ~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 344 (444)
T 3if2_A 268 TILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMNAVVNLAP--TRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLA 344 (444)
T ss_dssp EEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH
T ss_pred EEEEechhhc-cCCCCceEEEEECHHHHHHHHHHHHhccCCC--ChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 8999999997 5444 999999999998876543333333 4455555555554322 1112 455677777777
Q ss_pred HHhhcc-CC--CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCC-----CCCceE
Q 013461 340 RTGLSD-IH--GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR-----LPVGIR 411 (442)
Q Consensus 340 ~~~L~~-~~--g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~-----~~~~iR 411 (442)
.+.|.+ ++ ++.+..+..+.++++.++.... + ..++++. |.++||.+.++..+...... .+..+|
T Consensus 345 ~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~----~---~~~l~~~-l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iR 416 (444)
T 3if2_A 345 VKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPI----S---TLDLYER-LKAKGTLIVPSEYFFPGVDVSDYQHAHECIR 416 (444)
T ss_dssp HHHHHHHSSSSSEEEECCCBSSEEEEEETTCSS----C---HHHHHHH-HHHTTEECEEGGGSCTTCCCTTCSGGGSEEE
T ss_pred HHHHHHhcccCCceEecCCccEEEEEEcCCCCC----C---HHHHHHH-HHHCCeEEecchhhcCCCCCcccccCCCeEE
Confidence 777654 33 4556555567788888753110 1 2356665 55679999998765322110 124599
Q ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013461 412 LFVSAAHSEADLVKACESLKRISAVVLRD 440 (442)
Q Consensus 412 i~~~~~~t~eei~~~i~~l~~~~~~~~~~ 440 (442)
|+++. |++||++++++|+++++++.++
T Consensus 417 is~~~--~~e~i~~~l~~l~~~~~~~~~~ 443 (444)
T 3if2_A 417 MSIAA--DEQTLIDGIKVIGEVVRELYDN 443 (444)
T ss_dssp EESSS--CHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEeC--CHHHHHHHHHHHHHHHHHHHcc
Confidence 99997 9999999999999999887654
No 168
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.81 E-value=1.8e-19 Score=183.39 Aligned_cols=307 Identities=18% Similarity=0.210 Sum_probs=192.8
Q ss_pred eEEEe-ecCCCCCCCCChHHHHHHHHHHHh-cCCCCCccCccccCcHHH----HHHHHHHHhhhCCCc-----EEEEcch
Q 013461 110 EVVNF-ASANYLGLIGHEKLLESCTSALEK-YGVGSCGPRGFYGTIDVH----LDCEARIAKFLGTPD-----SILYSYG 178 (442)
Q Consensus 110 ~~id~-~s~~~l~~~~~p~v~ea~~~~l~~-~g~~~~~~~~~~g~~~~~----~~le~~lA~~~g~e~-----~i~~~sG 178 (442)
+.|+| ++.++ .+|.|++++.+.+.+ |..++.+.+ .|+..+.. ..+++++++++|.+. .+++++|
T Consensus 45 ~~i~L~a~e~~----~~~~V~eA~~~~l~~~~~~g~p~~~-~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sG 119 (483)
T 1rv3_A 45 VGLELIASENF----ASRAVLEALGSCLNNKYSLGYPGQR-YYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSG 119 (483)
T ss_dssp SSEECCTTCCC----CCHHHHHHHTSGGGTCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSH
T ss_pred cCeEEEcCCCC----CCHHHHHHHHHHHhccCcccCCCcc-ccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCc
Confidence 45777 44454 379999999998875 432443333 33333444 445589999999763 4889999
Q ss_pred HHHHHhhhhhhccCCCEEEeCCCchHHHHH--------HHHhcC--CeEEEecC------CCHHHHHHHHHhhcccccc-
Q 013461 179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQN--------GLYLSR--STVVYFKH------NDMDSLRNTLERVTADNKR- 241 (442)
Q Consensus 179 ~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~--------~~~l~g--~~v~~~~~------~d~~~Le~~l~~~~~~~~~- 241 (442)
++++..++.++++|||.|+++++.|.+... ++..+| .+++.++. .|+++|++.+++...+...
T Consensus 120 s~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~ 199 (483)
T 1rv3_A 120 SPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA 199 (483)
T ss_dssp HHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE
Confidence 999999999999999999999998887643 233444 45666532 3789999988732211100
Q ss_pred -------------------ccccccccc--CCCccccccCCCCC---ceeEEEEeccccc-cCCCcEEEcCHH-------
Q 013461 242 -------------------SNSFGVLGR--SGRGLTEHCGVPVD---KIDIVTAAMGHAL-ATEGGFCTGSAR------- 289 (442)
Q Consensus 242 -------------------a~~~g~~G~--~g~g~~~~~~v~~~---~~diii~S~sK~l-g~~GG~v~g~~~------- 289 (442)
.|+.-++-+ +..|... .++.+. ..|+++.|++|+| |..||+++++++
T Consensus 200 ~~sn~~~~~dl~~i~~ia~~~g~~livD~ah~~g~~~-~~~~~~p~~~~div~~s~~K~l~GprgG~i~~~~~~~~~~~~ 278 (483)
T 1rv3_A 200 GTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVV-AGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPK 278 (483)
T ss_dssp CCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHH-HTSSCCGGGTCSEEEEESSGGGCCCSCEEEEEECSBCC----
T ss_pred eCCcCCCcCCHHHHHHHHHHcCCEEEEEccchhcccc-cCCCCCCCCCCcEEEecCcccCCCCCceEEEEcchhhhhccc
Confidence 111111111 1112111 122222 5789999999999 667899998874
Q ss_pred --------hHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHhhccCCCceeecCC-CCC
Q 013461 290 --------VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNP-ESP 358 (442)
Q Consensus 290 --------~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~-~~~ 358 (442)
+.+.+.....+.. .++.+....++..++++.+. ..+++.++++++++++.+.|.+. |+++..+. .+.
T Consensus 279 ~g~~~~y~~~~~~~~~~~~~~-~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 356 (483)
T 1rv3_A 279 TGKEILYNLESLINSAVFPGL-QGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNH 356 (483)
T ss_dssp ---CCBCCHHHHHHHHHTTTT-CCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSS
T ss_pred cCcchhhHHHHHhhhhcCCcc-cCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEeccCCCCCc
Confidence 3333332211222 22333444444446776654 23567889999999999999987 88886542 345
Q ss_pred EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEe----eccCcccccCCCCCceEEEecCCCC----HHHHHHHHHHH
Q 013461 359 IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV----TSKRSMLDKCRLPVGIRLFVSAAHS----EADLVKACESL 430 (442)
Q Consensus 359 i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~----~~~~~~~~~~~~~~~iRi~~~~~~t----~eei~~~i~~l 430 (442)
++++.+... + .+ ..++.+ .|++.||.+. ++..+.. .+.++||+++..+| ++|+++++++|
T Consensus 357 ~~~v~~~~~-g---~~---~~~~~~-~L~~~gI~v~~~~~pg~~~~~----~~~~iRis~~~~~t~g~~~edi~~~~~~l 424 (483)
T 1rv3_A 357 LILVDLRSK-G---TD---GGRAEK-VLEACSIACNKNTCPGDKSAL----RPSGLRLGTPALTSRGLLEKDFQKVAHFI 424 (483)
T ss_dssp EEEEEGGGG-T---CC---HHHHHH-HHHHTTEECEEECCSSCSCTT----SCCEEEEECHHHHHTTCCHHHHHHHHHHH
T ss_pred eEEEeccCC-C---CC---HHHHHH-HHHhCCcEEecCCCCCCCcCC----CCceEEeecCCcccCCCCHHHHHHHHHHH
Confidence 677776421 1 01 123444 5777899998 4331110 13569999986555 99999999999
Q ss_pred HHHHHH
Q 013461 431 KRISAV 436 (442)
Q Consensus 431 ~~~~~~ 436 (442)
+++++.
T Consensus 425 ~~~l~~ 430 (483)
T 1rv3_A 425 HRGIEL 430 (483)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998865
No 169
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.81 E-value=3e-19 Score=177.14 Aligned_cols=289 Identities=11% Similarity=0.060 Sum_probs=175.5
Q ss_pred eEEEeecCCCCCCCCCh----HHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhC--------CCcEEE--E
Q 013461 110 EVVNFASANYLGLIGHE----KLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------TPDSIL--Y 175 (442)
Q Consensus 110 ~~id~~s~~~l~~~~~p----~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g--------~e~~i~--~ 175 (442)
.+|||+.+.|++...+| .+.+++.+.+.+.+ ..++....|. .++++.+|++++ .++.++ +
T Consensus 29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~----~~lr~~ia~~~~~~~~~~~~~~~i~~v~t 102 (401)
T 7aat_A 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKM--DKEYLPIAGL----ADFTRASAELALGENSEAFKSGRYVTVQG 102 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTC--CCCCCCTTCC----HHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CceeeeeeeEECCCCCEechHHHHHHHHHhccccc--ccCCCCCCCC----HHHHHHHHHHhcCCCccccccCceEEEec
Confidence 47999998887666444 56777666655322 2222222343 456666666553 456655 7
Q ss_pred cchHHHHHhhhhhhc---cCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC-------CHHHHHHHHHhhcccccc----
Q 013461 176 SYGLSTMFSAIPCFC---KKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKR---- 241 (442)
Q Consensus 176 ~sG~~a~~~ai~a~~---~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~~---- 241 (442)
++|++++..++.++. ++||.|+++.++|..+...++..|.+++.++.+ |++++++.+++.++..+.
T Consensus 103 ~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~ 182 (401)
T 7aat_A 103 ISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHA 182 (401)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEES
T ss_pred CcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeC
Confidence 888899998876654 999999999999999999999999999888753 567777777653322111
Q ss_pred -----------------------cccccccccCC-Ccc-----------ccccCCCCCceeEEEEeccccccCCC---cE
Q 013461 242 -----------------------SNSFGVLGRSG-RGL-----------TEHCGVPVDKIDIVTAAMGHALATEG---GF 283 (442)
Q Consensus 242 -----------------------a~~~g~~G~~g-~g~-----------~~~~~v~~~~~diii~S~sK~lg~~G---G~ 283 (442)
.|++-++-+.. .++ ...+ ....+.+|+++||||++|+.| ||
T Consensus 183 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~sK~~~~~G~RiG~ 261 (401)
T 7aat_A 183 CAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHF-IEQGIDVVLSQSYAKNMGLYGERAGA 261 (401)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHH-HHTTCCCEEEEECTTTSCCGGGCEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHH-HhcCCcEEEEecCCcccccccCceEE
Confidence 12211111100 000 0000 011345789999999999877 88
Q ss_pred EEc---CHH----hHHHHHhhCCceeccCCCcHHHHHHHHHHHHH-------HhcChHHHHHHHHHHHHHHHhhccC---
Q 013461 284 CTG---SAR----VVDHQRLSSSGYVFSASLPPYLASAAITAIDV-------LEENPDLITKLKKNTAILRTGLSDI--- 346 (442)
Q Consensus 284 v~g---~~~----~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~-------l~~~~~~~~~l~~~~~~l~~~L~~~--- 346 (442)
+++ +++ +++.++...... +.+.+...++++.++++. .+...+.+++++++++++.+.|.++
T Consensus 262 l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 339 (401)
T 7aat_A 262 FTVICRDAEEAKRVESQLKILIRPM--YSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSS 339 (401)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhc--cCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 664 666 334443321111 222334444444334421 2223457788999999999999876
Q ss_pred CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHH
Q 013461 347 HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKA 426 (442)
Q Consensus 347 ~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~ 426 (442)
+++++..+..+.+.++.+. . +.+..+++++||++.+ ++|++++. +|++||+++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~--------~-----~~~~~ll~~~gi~v~~-------------~~Ris~~~-~~~~~i~~~ 392 (401)
T 7aat_A 340 HNWQHITDQIGMFCFTGLK--------P-----EQVERLTKEFSIYMTK-------------DGRISVAG-VASSNVGYL 392 (401)
T ss_dssp SCCHHHHHCCSSEEECCCC--------H-----HHHHHHHHHHCEECCT-------------TCEEEGGG-CCTTTHHHH
T ss_pred CCCceecCCcceEEecCCC--------H-----HHHHHHHHhCCEeccC-------------CCeEEecc-CChhhHHHH
Confidence 1255443334444443331 1 2345566777998853 38999986 455669999
Q ss_pred HHHHHHHH
Q 013461 427 CESLKRIS 434 (442)
Q Consensus 427 i~~l~~~~ 434 (442)
+++|++++
T Consensus 393 ~~~l~~~~ 400 (401)
T 7aat_A 393 AHAIHQVT 400 (401)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998875
No 170
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.81 E-value=2e-18 Score=171.40 Aligned_cols=265 Identities=15% Similarity=0.092 Sum_probs=175.1
Q ss_pred CcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHH----HhcCCeEEEecCCCHHH
Q 013461 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDS 227 (442)
Q Consensus 152 ~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~----~l~g~~v~~~~~~d~~~ 227 (442)
..+...++++++|+++|.++++++++|++|+..++.++.++||.|+++.+.|.++...+ ...|.++..++.+|+++
T Consensus 63 ~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~ 142 (398)
T 1gc0_A 63 SNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQA 142 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHH
T ss_pred CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHH
Confidence 56788999999999999999999999999999999999999999999999999887766 56788999999889999
Q ss_pred HHHHHHhhcccccc---------------------cccccccccC--CCccccccCCCCCceeEEEEeccccccCC----
Q 013461 228 LRNTLERVTADNKR---------------------SNSFGVLGRS--GRGLTEHCGVPVDKIDIVTAAMGHALATE---- 280 (442)
Q Consensus 228 Le~~l~~~~~~~~~---------------------a~~~g~~G~~--g~g~~~~~~v~~~~~diii~S~sK~lg~~---- 280 (442)
+++.+++.+.-... .|+.-++-+. ..+... ..+ ..++|+++.|++|.+|..
T Consensus 143 l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~-~~~-~~~~d~~~~S~sK~~~~~~~~~ 220 (398)
T 1gc0_A 143 LEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQ-RPL-ELGADLVVHSATKYLSGHGDIT 220 (398)
T ss_dssp HHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHC-CGG-GGTCSEEEEETTTTTTCSSSCC
T ss_pred HHHhcCCCCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccC-Cch-hhCceEEEECCccccCCCCCCe
Confidence 98887643211100 2221111111 111110 011 135789999999999853
Q ss_pred CcEEEcCHHhHH-HHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCc----------
Q 013461 281 GGFCTGSARVVD-HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGL---------- 349 (442)
Q Consensus 281 GG~v~g~~~~i~-~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~---------- 349 (442)
||+++++++.++ .++..... .++++.+|+.++++.++++.+ +..+++..++.+.+.+.|.+.+++
T Consensus 221 ~G~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~ 296 (398)
T 1gc0_A 221 AGIVVGSQALVDRIRLQGLKD-MTGAVLSPHDAALLMRGIKTL---NLRMDRHCANAQVLAEFLARQPQVELIHYPGLAS 296 (398)
T ss_dssp CEEEEECHHHHHHHHHTHHHH-HTCCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----
T ss_pred EEEEEEChHHHHHHHHHHhhc-cCCCCCCHHHHHHHHhccchH---HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCC
Confidence 699999988776 44432211 145567888888777777644 345666777777777777664332
Q ss_pred ----eeecC---CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeecc---C------ccc-cc---------
Q 013461 350 ----SIASN---PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK---R------SML-DK--------- 403 (442)
Q Consensus 350 ----~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~---~------~~~-~~--------- 403 (442)
.+... ..++++.+.+.. +. +.+.+++++.|+.+.... . |.. .+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~-------~~----~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~ 365 (398)
T 1gc0_A 297 FPQYTLARQQMSQPGGMIAFELKG-------GI----GAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERA 365 (398)
T ss_dssp ------------CCTTEEEEEETT-------HH----HHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHH
T ss_pred CcCHHHHHhhCCCCceEEEEEECC-------CH----HHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHH
Confidence 22211 257888888732 11 112334556677665421 1 110 00
Q ss_pred --CCCCCceEEEecCCCCHHHHHHHHHHHHHH
Q 013461 404 --CRLPVGIRLFVSAAHSEADLVKACESLKRI 433 (442)
Q Consensus 404 --~~~~~~iRi~~~~~~t~eei~~~i~~l~~~ 433 (442)
+..+..||++++..+++++|+.+.++|+++
T Consensus 366 ~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 366 HYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp HTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 011356999999999999999999998764
No 171
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.81 E-value=6.2e-19 Score=176.36 Aligned_cols=310 Identities=12% Similarity=-0.024 Sum_probs=192.4
Q ss_pred EEEeecCCCCC---CCCChHHHHHHHHHHH-hcCCCCCccCccccCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHH--
Q 013461 111 VVNFASANYLG---LIGHEKLLESCTSALE-KYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTM-- 182 (442)
Q Consensus 111 ~id~~s~~~l~---~~~~p~v~ea~~~~l~-~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~-- 182 (442)
+|||+.+.+ . +..+|.+++++.+++. ..+... ..|+......+|++.+|++++.+ ++++++++++++
T Consensus 34 ~i~l~~g~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l 108 (422)
T 3d6k_A 34 SLDLTRGKP-SAEQLDLSNDLLSLPGGDFRTKDGVDC----RNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMF 108 (422)
T ss_dssp CEECCCCSC-CHHHHHTTGGGGGCSTTCCBCTTCCBT----TSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHH
T ss_pred eEeCCCCCC-ChhhCCCcHHHHHHHHHHHhhccchhh----hCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHH
Confidence 689987764 3 3445677777665421 111111 12333333578999999999864 555556666776
Q ss_pred HhhhhhhccC------------CCEEEeCCCchHHHHHHHHhcCCeEEEecC----CCHHHHHHHHHhh-ccccc-c---
Q 013461 183 FSAIPCFCKK------------GDLIVADEGVHWGIQNGLYLSRSTVVYFKH----NDMDSLRNTLERV-TADNK-R--- 241 (442)
Q Consensus 183 ~~ai~a~~~~------------gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~----~d~~~Le~~l~~~-~~~~~-~--- 241 (442)
..++.++.++ +|.|+++.++|..+...++..|++++.++. .|+++|++.++.. .+-.. .
T Consensus 109 ~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~~~~ 188 (422)
T 3d6k_A 109 DLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVF 188 (422)
T ss_dssp HHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETTEECHHHHHHHHTSTTEEEEEECCSS
T ss_pred HHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCCCCCHHHHHHHHhcCCCeEEEEcCCC
Confidence 5666777665 447999999999999999999999988875 3788888887642 11100 0
Q ss_pred -------------------cc-ccc--ccccCCCc---cc----cccCC-------CCCceeEEEEeccccccCCC---c
Q 013461 242 -------------------SN-SFG--VLGRSGRG---LT----EHCGV-------PVDKIDIVTAAMGHALATEG---G 282 (442)
Q Consensus 242 -------------------a~-~~g--~~G~~g~g---~~----~~~~v-------~~~~~diii~S~sK~lg~~G---G 282 (442)
++ ..+ ++-+.-.+ +. .+..+ ...+.+++++||||+ +++| |
T Consensus 189 ~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~GlriG 267 (422)
T 3d6k_A 189 GNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGVS 267 (422)
T ss_dssp CTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSCE
T ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccceE
Confidence 22 222 11110000 10 00011 123568999999998 4444 9
Q ss_pred EEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHH----hcChHHHHHHHHHHHHHHHhhcc----CCCceeecC
Q 013461 283 FCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL----EENPDLITKLKKNTAILRTGLSD----IHGLSIASN 354 (442)
Q Consensus 283 ~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l----~~~~~~~~~l~~~~~~l~~~L~~----~~g~~~~~~ 354 (442)
|+++++++++.+......+ +.+.+++.++++.++++.. +...+.++.++++++++.+.|.+ ..++.+..+
T Consensus 268 ~~~~~~~l~~~l~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p 345 (422)
T 3d6k_A 268 FFASSKENIEWYASHANVR--GIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSP 345 (422)
T ss_dssp EEECCHHHHHHHHHHHHHH--CSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCC
T ss_pred EEEeCHHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCC
Confidence 9999999999887543332 2334677777776776531 12234566677777777777654 323565545
Q ss_pred CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEee-ccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHH
Q 013461 355 PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT-SKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 433 (442)
Q Consensus 355 ~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~-~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~ 433 (442)
..+.++++.++.. + ..++.+ .|+++||.+.+ +..+.......+..+||+++. .|++++++++++|+++
T Consensus 346 ~~g~~~~~~~~~~------~---~~~~~~-~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~ 414 (422)
T 3d6k_A 346 TGGYFISVDVVPG------T---ASRVVE-LAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFATC 414 (422)
T ss_dssp SBSSCEEEEESTT------C---HHHHHH-HHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHHH
T ss_pred CcceEEEEECCCC------C---HHHHHH-HHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHHH
Confidence 5677888888431 1 124554 46677999998 332321110113569999997 8999999999999999
Q ss_pred HHHHhh
Q 013461 434 SAVVLR 439 (442)
Q Consensus 434 ~~~~~~ 439 (442)
++++..
T Consensus 415 l~~~~~ 420 (422)
T 3d6k_A 415 VLMAAL 420 (422)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887654
No 172
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.81 E-value=9.7e-19 Score=177.16 Aligned_cols=307 Identities=15% Similarity=0.098 Sum_probs=198.4
Q ss_pred CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCC-CCccC-ccccCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHHH
Q 013461 108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVG-SCGPR-GFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF 183 (442)
Q Consensus 108 G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~-~~~~~-~~~g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~ 183 (442)
++.++.|.++. +|.. ++.+.+++.++++.|+.. ..+++ ...+..+.++++++++|+++|.+ ++++++++++++.
T Consensus 65 ~~~~iyld~~~-~g~~-p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~ 142 (465)
T 3e9k_A 65 DENAIYFLGNS-LGLQ-PKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLH 142 (465)
T ss_dssp TCBCEECBTTT-SCCE-ETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHH
T ss_pred CCCeEEecCCc-cCCC-hHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHH
Confidence 35555555443 4543 567888888888765422 11111 11244567788999999999964 6677777889999
Q ss_pred hhhhhhccCCCE---EEeCCCchHHHHH----HHHhcCCeE-----EEecCC-----CHHHHHHHHHhhcccccc-----
Q 013461 184 SAIPCFCKKGDL---IVADEGVHWGIQN----GLYLSRSTV-----VYFKHN-----DMDSLRNTLERVTADNKR----- 241 (442)
Q Consensus 184 ~ai~a~~~~gd~---Vi~~~~~h~s~~~----~~~l~g~~v-----~~~~~~-----d~~~Le~~l~~~~~~~~~----- 241 (442)
.++.++.++||. |+++.+.|.+... .++..|.++ ...+.+ |++++++.+++..+..+.
T Consensus 143 ~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~ 222 (465)
T 3e9k_A 143 LLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSG 222 (465)
T ss_dssp HHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEES
T ss_pred HHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeC
Confidence 999999776654 9999999988544 455677764 233332 789999998754222211
Q ss_pred -------------------cccccccc--cCCCccccccCCCCCceeEEEEeccccc--cCCC-cEEEcCHHhHHHHHhh
Q 013461 242 -------------------SNSFGVLG--RSGRGLTEHCGVPVDKIDIVTAAMGHAL--ATEG-GFCTGSARVVDHQRLS 297 (442)
Q Consensus 242 -------------------a~~~g~~G--~~g~g~~~~~~v~~~~~diii~S~sK~l--g~~G-G~v~g~~~~i~~l~~~ 297 (442)
.|+.-++- .++.|... .++...++|+++.|++|.+ |..| |++++++++++.+...
T Consensus 223 ~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~-~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~ 301 (465)
T 3e9k_A 223 VHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVE-LYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPA 301 (465)
T ss_dssp BCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSC-CCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCS
T ss_pred cccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcC-CchhhcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCc
Confidence 12211111 11111111 1111135789999999999 4444 8888898887655422
Q ss_pred CCc---------------ee-------c-cCCCcHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHhhccC------
Q 013461 298 SSG---------------YV-------F-SASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDI------ 346 (442)
Q Consensus 298 ~~~---------------~~-------~-s~s~~p~~aaaa~aal~~l~~--~~~~~~~l~~~~~~l~~~L~~~------ 346 (442)
..+ +. | .++.++..+++..++++.+++ .++++++++++++++.+.|+++
T Consensus 302 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 381 (465)
T 3e9k_A 302 LVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKA 381 (465)
T ss_dssp SCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred ccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 111 00 0 114566777777788888764 3678899999999999999874
Q ss_pred ----CCceeecCC----CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEe-cCC
Q 013461 347 ----HGLSIASNP----ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAA 417 (442)
Q Consensus 347 ----~g~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~-~~~ 417 (442)
+|+++..+. .++++++.++.. ..++.+. |.++||.+.... +..||+++ +..
T Consensus 382 ~~~~~g~~~~~p~~~~~~g~~~~~~~~~~----------~~~l~~~-L~~~Gi~v~~~~---------~~~iRis~~~~~ 441 (465)
T 3e9k_A 382 ATKKPVVNIITPSHVEERGCQLTITFSVP----------NKDVFQE-LEKRGVVCDKRN---------PNGIRVAPVPLY 441 (465)
T ss_dssp -----CEEECSCSSGGGBCSCEEEEECCT----------TCCHHHH-HHTTTEECEEET---------TTEEEEBCCTTT
T ss_pred ccCCCCeEEeCCCCHhhcccEEEEEecCC----------HHHHHHH-HHHCCEEEecCC---------CCEEEEeCcccC
Confidence 588877543 277888887521 1146665 556699986321 34599998 899
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 013461 418 HSEADLVKACESLKRISAVV 437 (442)
Q Consensus 418 ~t~eei~~~i~~l~~~~~~~ 437 (442)
+|++|+++++++|++++++.
T Consensus 442 ~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 442 NSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp CCHHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999987653
No 173
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.80 E-value=5.7e-18 Score=166.25 Aligned_cols=290 Identities=12% Similarity=0.070 Sum_probs=182.1
Q ss_pred CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC---cEEE-EcchHHHHHhhhhhhccCCCEEEeC
Q 013461 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP---DSIL-YSYGLSTMFSAIPCFCKKGDLIVAD 199 (442)
Q Consensus 124 ~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e---~~i~-~~sG~~a~~~ai~a~~~~gd~Vi~~ 199 (442)
.+|++++++.+++.. . + ..+..+...++++++++++|.+ +.++ +++|++++..++.+++++||.|++.
T Consensus 30 ~~~~v~~a~~~~~~~----~---~-~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~ 101 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY----F---R-TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVI 101 (376)
T ss_dssp CCHHHHHHHTSCCCC----C---S-SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEE
T ss_pred CcHHHHHHhcCCCCC----C---C-CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEE
Confidence 368888887665421 1 1 1123467789999999999965 4555 4567999999999999999988887
Q ss_pred CCchHH-HH-HHHHhcCCeEEEecC-----CCHHHHHHHHHhhcccccc---------------------cccccccccC
Q 013461 200 EGVHWG-IQ-NGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKR---------------------SNSFGVLGRS 251 (442)
Q Consensus 200 ~~~h~s-~~-~~~~l~g~~v~~~~~-----~d~~~Le~~l~~~~~~~~~---------------------a~~~g~~G~~ 251 (442)
.+.+++ .. ..+...|.+++.++. .|++++++.+...+..... .|+.-++-+.
T Consensus 102 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~ 181 (376)
T 3f0h_A 102 DGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDC 181 (376)
T ss_dssp ESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEEC
T ss_pred eCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEc
Confidence 664433 22 345667888877664 2677777654321111000 2222222111
Q ss_pred --CCccccccCCCCCceeEEEEecccccc-CCC-cEEEcCHHhHHHHHhhCC-ce--------------eccCCCcHHHH
Q 013461 252 --GRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLSSS-GY--------------VFSASLPPYLA 312 (442)
Q Consensus 252 --g~g~~~~~~v~~~~~diii~S~sK~lg-~~G-G~v~g~~~~i~~l~~~~~-~~--------------~~s~s~~p~~a 312 (442)
+.+. ..+++...++|+++.|++|+++ ..| |++++++++++.+..... ++ ....+.+...+
T Consensus 182 ~~~~~~-~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (376)
T 3f0h_A 182 VSAFLA-DPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGIL 260 (376)
T ss_dssp TTTTTT-SCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHH
T ss_pred CccccC-ccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHH
Confidence 1111 0111111236899999999998 444 889999999988864321 11 01123344444
Q ss_pred HHHHHHHHHHhcC---hHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhC
Q 013461 313 SAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKED 389 (442)
Q Consensus 313 aaa~aal~~l~~~---~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~ 389 (442)
+++.++++.+++. +.++++.+++++++.+.|+++ ++++..+..++.+........ + ..++.+.++++.
T Consensus 261 ~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~-----~---~~~l~~~l~~~~ 331 (376)
T 3f0h_A 261 LQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL-PFELVSESPANGVTSVHPTTA-----N---AYDIFLKLKDEY 331 (376)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSBBTTEEEEEESSS-----C---HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccCccccCceEEEEeCCCC-----C---HHHHHHHHHHhC
Confidence 5666778776654 567888899999999999887 777654333343333222110 1 235777655555
Q ss_pred CEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 390 GVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 390 GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
||.+.++..+. .+..+|++++..+|++|+++++++|++++++
T Consensus 332 gi~v~~g~~~~-----~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 332 GIWICPNGGEM-----KDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp SEECEECCGGG-----TTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred CEEEecCcccc-----CCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 99998874321 1245999999989999999999999988753
No 174
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.4e-18 Score=174.63 Aligned_cols=307 Identities=14% Similarity=0.165 Sum_probs=202.8
Q ss_pred ecCCCCCC--CCChHHHHHHHHHHHhcCCC-CCccCccccCcHHHHHHHHHHHhhhCCC----cEEEEcchHHHHHhhhh
Q 013461 115 ASANYLGL--IGHEKLLESCTSALEKYGVG-SCGPRGFYGTIDVHLDCEARIAKFLGTP----DSILYSYGLSTMFSAIP 187 (442)
Q Consensus 115 ~s~~~l~~--~~~p~v~ea~~~~l~~~g~~-~~~~~~~~g~~~~~~~le~~lA~~~g~e----~~i~~~sG~~a~~~ai~ 187 (442)
.+++++|. .+++.+.+++.+++.++... ...+....|..++..++++.+++++|.+ .++++++|++++..++.
T Consensus 65 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~ 144 (497)
T 3mc6_A 65 KEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACL 144 (497)
T ss_dssp GGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHH
T ss_pred CCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHH
Confidence 34555664 24589999999999886432 2233344556677888899999999966 57888899999999998
Q ss_pred hhcc-----CC---CEEEeCCCchHHHHHHHHhcCCeEEEecCC------CHHHHHHHHHhhcccccc------------
Q 013461 188 CFCK-----KG---DLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKR------------ 241 (442)
Q Consensus 188 a~~~-----~g---d~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~------d~~~Le~~l~~~~~~~~~------------ 241 (442)
++.+ +| |.|+++.++|.++..+++..|.+++.++.+ |+++|++.+++.+.-...
T Consensus 145 a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~ 224 (497)
T 3mc6_A 145 SAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADD 224 (497)
T ss_dssp HHHHHHHHHSCCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCS
T ss_pred HHHHHHHhcCCCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCC
Confidence 8865 56 899999999999999999999999988754 466777766542211000
Q ss_pred ---------ccccccccc--C-----------CCccccccCCCCCceeEEEEeccccc-cCC-CcEEEcCHHhHHHHHhh
Q 013461 242 ---------SNSFGVLGR--S-----------GRGLTEHCGVPVDKIDIVTAAMGHAL-ATE-GGFCTGSARVVDHQRLS 297 (442)
Q Consensus 242 ---------a~~~g~~G~--~-----------g~g~~~~~~v~~~~~diii~S~sK~l-g~~-GG~v~g~~~~i~~l~~~ 297 (442)
.|+..++-+ . |.|....+.....++|+++.|++|.+ +.. .|+++++++.+......
T Consensus 225 l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~ 304 (497)
T 3mc6_A 225 IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYY 304 (497)
T ss_dssp CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSC
T ss_pred HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhc
Confidence 122111111 1 11111112222346899999999997 433 38888776655433111
Q ss_pred C-Cc--------eeccCCCcHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHhhcc-CCCceeecCCCCCEEEEEec
Q 013461 298 S-SG--------YVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSD-IHGLSIASNPESPIVFLILE 365 (442)
Q Consensus 298 ~-~~--------~~~s~s~~p~~aaaa~aal~~l~~--~~~~~~~l~~~~~~l~~~L~~-~~g~~~~~~~~~~i~~~~~~ 365 (442)
. .. ..+.++.+....++..++++.+.. ..++.++..++.+++.+.|.+ ++|+++..++..+++.+...
T Consensus 305 ~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~ 384 (497)
T 3mc6_A 305 VNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSK 384 (497)
T ss_dssp CBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECT
T ss_pred ccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCC
Confidence 0 01 111122233334444556665543 245778889999999999998 68998876667777777642
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013461 366 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD 440 (442)
Q Consensus 366 ~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~~ 440 (442)
. .+ ..++.+. |.++||.+..... |..+|++++ .+|++|+++++++|+++++++.++
T Consensus 385 ~------~~---~~~l~~~-L~~~Gi~v~~~~~--------~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~~ 440 (497)
T 3mc6_A 385 T------LN---IHELSDR-LSKKGWHFNALQK--------PVALHMAFT-RLSAHVVDEICDILRTTVQELKSE 440 (497)
T ss_dssp T------TT---HHHHHHH-HHTTTCBCEECCS--------SCCEEEECC-TTTTCTHHHHHHHHHHHHHHHTCC
T ss_pred C------CC---HHHHHHH-HHhCCEEEecCCC--------CCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHHhC
Confidence 1 01 3367775 5556998876543 245899999 689999999999999999877543
No 175
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.80 E-value=1.1e-17 Score=167.83 Aligned_cols=266 Identities=14% Similarity=0.060 Sum_probs=180.8
Q ss_pred CcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHH----HHhcCCeEEEecCCCHHH
Q 013461 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDS 227 (442)
Q Consensus 152 ~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~----~~l~g~~v~~~~~~d~~~ 227 (442)
..+...++|+++|+++|.++++++++|++|+..++.+++++||.|+++.+.|+++... ++..|.++++++.+|+++
T Consensus 112 ~~~~~~~l~~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~ 191 (445)
T 1qgn_A 112 GNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGA 191 (445)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHH
T ss_pred CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHH
Confidence 3577899999999999999999999999999999999999999999999999987764 456789999999999999
Q ss_pred HHHHHHhhc-ccccc---------------------cccccccccC--CCccccccCCCCCceeEEEEeccccccCC---
Q 013461 228 LRNTLERVT-ADNKR---------------------SNSFGVLGRS--GRGLTEHCGVPVDKIDIVTAAMGHALATE--- 280 (442)
Q Consensus 228 Le~~l~~~~-~~~~~---------------------a~~~g~~G~~--g~g~~~~~~v~~~~~diii~S~sK~lg~~--- 280 (442)
+++.+++.+ .-... .|+.-++-+. +.+.. ......+.|+++.|++|.+|..
T Consensus 192 l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~--~~~~~~g~Div~~S~sK~~gg~gd~ 269 (445)
T 1qgn_A 192 LELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN--QKALALGADLVLHSATKFLGGHNDV 269 (445)
T ss_dssp HHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT--CCTTTTTCSEEEECTTTTTTCSSSC
T ss_pred HHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc--CCccccCCEEEEECCcccccccccc
Confidence 999998654 21110 2222111111 11111 0111135799999999999754
Q ss_pred -CcEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCc-eeecC----
Q 013461 281 -GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGL-SIASN---- 354 (442)
Q Consensus 281 -GG~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~-~~~~~---- 354 (442)
+|++++++++++.++... ..+++.++|+.+..+..+++.+ ...+++..++.+++.+.|.+.+++ .+..+
T Consensus 270 ~~G~l~~~~~l~~~l~~~~--~~~g~~~~~~~a~~~~~~l~~l---~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~ 344 (445)
T 1qgn_A 270 LAGCISGPLKLVSEIRNLH--HILGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQS 344 (445)
T ss_dssp CCEEEEECHHHHHHHHHHH--HHHCCCCCHHHHHHHHHHGGGH---HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSS
T ss_pred eEEEEEECHHHHHHHHHHH--HHhCCCCCHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCC
Confidence 799999999988876432 2345556787766665665544 335566777788888888877666 33322
Q ss_pred ------------CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCccc------------c-----cCC
Q 013461 355 ------------PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML------------D-----KCR 405 (442)
Q Consensus 355 ------------~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~------------~-----~~~ 405 (442)
..++++.+.++.. .....++.+. |+..++.++.+..++. + ...
T Consensus 345 ~p~~~~~~~~~~g~g~ivsf~l~~~-------~~~~~~~l~~-l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g 416 (445)
T 1qgn_A 345 HPEHHIAKKQMTGFGGAVSFEVDGD-------LLTTAKFVDA-LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYG 416 (445)
T ss_dssp STTHHHHHHHCSCCCSEEEEEESSC-------HHHHHHHHHH-CSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTT
T ss_pred CchHHHHHHhccCCCcEEEEEECCC-------HHHHHHHHHh-CCCceEeccCCCCceeeecccccccccCCHHHHHhcC
Confidence 1477899988531 1123345553 4333666655543211 0 011
Q ss_pred C-CCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 406 L-PVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 406 ~-~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
. +..||+|++ .||++.+++.|+++++.
T Consensus 417 ~~~~~iRlSvG----~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 417 IMDNLVRFSFG----VEDFDDLKADILQALDS 444 (445)
T ss_dssp CCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence 1 346999997 37899999999988764
No 176
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.80 E-value=8.6e-18 Score=164.78 Aligned_cols=280 Identities=16% Similarity=0.171 Sum_probs=184.8
Q ss_pred hHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhh-ccCCCEEEeCCCchH
Q 013461 126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHW 204 (442)
Q Consensus 126 p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~-~~~gd~Vi~~~~~h~ 204 (442)
|++++++.+.+... .++..+...++|+++|+++|.++++++++|++|+..++.++ .++||.|+++.++|.
T Consensus 16 ~~v~~a~~~~~~~~---------~~~~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~ 86 (367)
T 3nyt_A 16 DKIDAGIQRVLRHG---------QYILGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYV 86 (367)
T ss_dssp HHHHHHHHHHHHHC---------CCSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCT
T ss_pred HHHHHHHHHHHhcC---------CccCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccH
Confidence 56677777666542 12234667899999999999999999999999999999998 899999999999999
Q ss_pred HHHHHHHhcCCeEEEecCC------CHHHHHHHHHhhcccccc------------------cccccccccC--CCccc--
Q 013461 205 GIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKR------------------SNSFGVLGRS--GRGLT-- 256 (442)
Q Consensus 205 s~~~~~~l~g~~v~~~~~~------d~~~Le~~l~~~~~~~~~------------------a~~~g~~G~~--g~g~~-- 256 (442)
++..++...|.+++.++.+ |++++++.+++.+..... .|+.-++-+. ..|..
T Consensus 87 ~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~ 166 (367)
T 3nyt_A 87 ATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAIIPVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYK 166 (367)
T ss_dssp HHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCTTEEEECCBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEET
T ss_pred HHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCcCCcEEEeeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeEC
Confidence 9999999999999988754 677777766432211000 1221111110 11111
Q ss_pred -cccCCCCCceeEEEEec--cccccCC--CcEEEc-CHHhHHHHHhhCC-ce---------eccCCCcHHHHHHHHHHHH
Q 013461 257 -EHCGVPVDKIDIVTAAM--GHALATE--GGFCTG-SARVVDHQRLSSS-GY---------VFSASLPPYLASAAITAID 320 (442)
Q Consensus 257 -~~~~v~~~~~diii~S~--sK~lg~~--GG~v~g-~~~~i~~l~~~~~-~~---------~~s~s~~p~~aaaa~aal~ 320 (442)
...+. .. |+++.|| +|.+|.. ||++++ ++++++.++.... +. .++..++++.++++.+.++
T Consensus 167 ~~~~~~--~~-di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~ 243 (367)
T 3nyt_A 167 GKRSCN--LS-TVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLE 243 (367)
T ss_dssp TEETTS--SS-SEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHH
T ss_pred CeeccC--CC-CEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHH
Confidence 01111 11 8999997 8999863 688777 5778777655321 11 1345678898888888877
Q ss_pred HHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCC-----CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEee
Q 013461 321 VLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE-----SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT 395 (442)
Q Consensus 321 ~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~ 395 (442)
.++ +..++.+++.+++.+.|.++ ++.+...+. ..++.+.+. + ..++.+. |+++||.+++
T Consensus 244 ~~~---~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~l~~~-L~~~GI~~~~ 307 (367)
T 3nyt_A 244 IFE---EEIALRQKVAAEYDLSLKQV-GIGTPFIEVNNISVYAQYTVRMD--------N---RESVQAS-LKAAGVPTAV 307 (367)
T ss_dssp THH---HHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEECCCSSEEEECS--------S---HHHHHHH-HHHHTCCCBC
T ss_pred HHH---HHHHHHHHHHHHHHHHhccC-CeeccCCCCCCceeeEEEEEEeC--------C---HHHHHHH-HHHCCCceec
Confidence 653 46677788888999999886 554432211 123344332 1 2246664 5556999887
Q ss_pred ccCcccc--------cCCCC-------CceEEEecCCCCHHHHHHHHHHHHHH
Q 013461 396 SKRSMLD--------KCRLP-------VGIRLFVSAAHSEADLVKACESLKRI 433 (442)
Q Consensus 396 ~~~~~~~--------~~~~~-------~~iRi~~~~~~t~eei~~~i~~l~~~ 433 (442)
....... ...+| ..||++++..+|++|++++++++++.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 308 HYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp SCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred cCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 6431111 00111 13999999999999999999999764
No 177
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.80 E-value=1.9e-17 Score=163.60 Aligned_cols=292 Identities=12% Similarity=0.077 Sum_probs=190.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC---cEEEEcchHHHHHhhhhhhccCCCEEEeCCC
Q 013461 125 HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP---DSILYSYGLSTMFSAIPCFCKKGDLIVADEG 201 (442)
Q Consensus 125 ~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e---~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~ 201 (442)
+|++++++.+.+.. .. .....+...++++.+|+++|.+ +++++++|++++..++.++.++||.|+++.+
T Consensus 30 ~~~v~~a~~~~~~~---~~-----~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~ 101 (396)
T 2ch1_A 30 SKRVLTAMTNTVLS---NF-----HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVN 101 (396)
T ss_dssp CHHHHHHTTSCCCC---TT-----CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CHHHHHHhcccccc---CC-----ChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcC
Confidence 57777776554321 01 0111245789999999999965 3566677889999999999999999999999
Q ss_pred chHHHH--HHHHhcCCeEEEecC-----CCHHHHHHHHHhh-cccccc---------------------cccccccccCC
Q 013461 202 VHWGIQ--NGLYLSRSTVVYFKH-----NDMDSLRNTLERV-TADNKR---------------------SNSFGVLGRSG 252 (442)
Q Consensus 202 ~h~s~~--~~~~l~g~~v~~~~~-----~d~~~Le~~l~~~-~~~~~~---------------------a~~~g~~G~~g 252 (442)
.|.++. ..++..|++++.++. .|++++++.+++. +..... .|+.-++-+.-
T Consensus 102 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea 181 (396)
T 2ch1_A 102 GIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAV 181 (396)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECT
T ss_pred CcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEcc
Confidence 998874 467788999988873 5788999888752 211100 12211111110
Q ss_pred Ccc-ccccCCCCCceeEEEEeccccccC-CC-cEEEcCHHhHHHHHhhC---Cc------------------eeccCCCc
Q 013461 253 RGL-TEHCGVPVDKIDIVTAAMGHALAT-EG-GFCTGSARVVDHQRLSS---SG------------------YVFSASLP 308 (442)
Q Consensus 253 ~g~-~~~~~v~~~~~diii~S~sK~lg~-~G-G~v~g~~~~i~~l~~~~---~~------------------~~~s~s~~ 308 (442)
.+. ....++...+.|+++.|++|+++. .| |++++++++++.++... .+ ....++.+
T Consensus 182 ~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (396)
T 2ch1_A 182 ASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVA 261 (396)
T ss_dssp TTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCC
T ss_pred ccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCc
Confidence 010 001122223468999999998853 34 79999999888775421 00 01112345
Q ss_pred HHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHhhccCCCceeecCCC---C-CEEEEEecCCCCCchhhHHHHHHHH
Q 013461 309 PYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNPE---S-PIVFLILEKSTGSMKNDLQLLEDIA 382 (442)
Q Consensus 309 p~~aaaa~aal~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~---~-~i~~~~~~~~~~~~~~~~~~~~~i~ 382 (442)
...++++.++++.+. ..++.+++++++++++.+.|+++ |+++..+.. . .++++.++... + ..++.
T Consensus 262 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~ 332 (396)
T 2ch1_A 262 SNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPKGV-----D---WWKVS 332 (396)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCTTC-----C---HHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccccCCceEEEEcCCCC-----C---HHHHH
Confidence 556666777887753 23567889999999999999987 887764322 1 37777763211 1 23577
Q ss_pred HHHHHhCCEEEeeccCcccccCCCCCceEEEe-cCCCCHHHHHHHHHHHHHHHHHHh
Q 013461 383 DWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAVVL 438 (442)
Q Consensus 383 ~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~-~~~~t~eei~~~i~~l~~~~~~~~ 438 (442)
+.+++++||.+.++..+. .+..+||++ +..+|++|+++++++|+++++++.
T Consensus 333 ~~L~~~~gi~v~~g~~~~-----~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 333 QYAMNNFSLEVQGGLGPT-----FGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp HHHHHHHCBCCBCCCGGG-----TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCEEEecCcccc-----CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 765555599998764321 134599999 566799999999999999988764
No 178
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.80 E-value=5.8e-18 Score=168.63 Aligned_cols=311 Identities=10% Similarity=0.053 Sum_probs=177.2
Q ss_pred eeEEEeecCCCCCCCC-ChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh----C----CCcEEEEcchH
Q 013461 109 KEVVNFASANYLGLIG-HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G----TPDSILYSYGL 179 (442)
Q Consensus 109 ~~~id~~s~~~l~~~~-~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~----g----~e~~i~~~sG~ 179 (442)
..+|||+.+++-.... .+.+.+++.+.+.+.... .....|+......++++.+|+++ | .++++++++|+
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t 108 (417)
T 3g7q_A 31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAA--DALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQ 108 (417)
T ss_dssp -CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHH--HHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHH
T ss_pred CCceEecCcCCCCCChHHHHHHHHHHHHhhCCccc--ceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcH
Confidence 5689997765322110 134455555444331100 00012333444567888888776 2 35788888899
Q ss_pred HHHHhhhhhhccCCC-----EEEeC-CCchHHHHHHHHh------cCCeEEEecCC------CHHHHH------------
Q 013461 180 STMFSAIPCFCKKGD-----LIVAD-EGVHWGIQNGLYL------SRSTVVYFKHN------DMDSLR------------ 229 (442)
Q Consensus 180 ~a~~~ai~a~~~~gd-----~Vi~~-~~~h~s~~~~~~l------~g~~v~~~~~~------d~~~Le------------ 229 (442)
+++..++.+++++|| .|++. .++|..+...+.. .+..+..++.+ |+++++
T Consensus 109 ~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~v~~~~ 188 (417)
T 3g7q_A 109 SAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLHIGEETGMICVSR 188 (417)
T ss_dssp HHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCCCCTTEEEEEEES
T ss_pred HHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhccccCceEEEECC
Confidence 999999999999987 88876 8888776544321 12233333211 333333
Q ss_pred ---------------HHHHhhcccccccccccccccCCCc--c--ccccCCC--CCceeEEEEeccccccCCC---cEEE
Q 013461 230 ---------------NTLERVTADNKRSNSFGVLGRSGRG--L--TEHCGVP--VDKIDIVTAAMGHALATEG---GFCT 285 (442)
Q Consensus 230 ---------------~~l~~~~~~~~~a~~~g~~G~~g~g--~--~~~~~v~--~~~~diii~S~sK~lg~~G---G~v~ 285 (442)
++.+-.. .|++-++-+.-.+ . ..+.+.. ..+.+++++|||| +++.| ||++
T Consensus 189 p~NptG~~~~~~~~~~l~~~a~-----~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~~G~r~G~~~ 262 (417)
T 3g7q_A 189 PTNPTGNVITDEELMKLDRLAN-----QHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSK-LGLPGSRCGIII 262 (417)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHH-----HTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GTCTTSCCEEEE
T ss_pred CCCCCCCccCHHHHHHHHHHHH-----HcCCEEEEeCCCccccccccccccccCCCCCEEEEEechh-ccCCCcceEEEE
Confidence 2222111 1222111111010 0 1111221 1357899999999 56555 9999
Q ss_pred cCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhc---ChH-HHHHHHHHHHHHHHhhcc-CC--CceeecCCCCC
Q 013461 286 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE---NPD-LITKLKKNTAILRTGLSD-IH--GLSIASNPESP 358 (442)
Q Consensus 286 g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~---~~~-~~~~l~~~~~~l~~~L~~-~~--g~~~~~~~~~~ 358 (442)
+++++++.++.....+.++ .+++.++++.+.++.... ..+ ++++++++.+++.+.|.+ ++ ++.+..+..+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ 340 (417)
T 3g7q_A 263 ANDKTITAIANMNGIISLA--PGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAI 340 (417)
T ss_dssp CCHHHHHHHHHHHHHHCCC--CCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSS
T ss_pred eCHHHHHHHHHhhcceeeC--CCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcce
Confidence 9999999887654333333 355555555556653221 111 556677777777777765 33 46666555677
Q ss_pred EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCC----CCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 359 IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR----LPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 359 i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~----~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
++++.++.... + ..++.+. |.++||.+.++..+...... .+..+||+++. |++||++++++|++++
T Consensus 341 ~~~~~~~~~~~----~---~~~l~~~-l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l 410 (417)
T 3g7q_A 341 FLWLWFKDLPI----T---TELLYQR-LKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKILAEEI 410 (417)
T ss_dssp EEEEECTTCSS----C---HHHHHHH-HHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCC----C---HHHHHHH-HHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence 88888753110 1 2356665 45679999998754321110 02459999985 9999999999999999
Q ss_pred HHHhh
Q 013461 435 AVVLR 439 (442)
Q Consensus 435 ~~~~~ 439 (442)
+++.+
T Consensus 411 ~~~~~ 415 (417)
T 3g7q_A 411 ERAWR 415 (417)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87754
No 179
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.80 E-value=2.8e-18 Score=166.54 Aligned_cols=287 Identities=12% Similarity=0.035 Sum_probs=187.6
Q ss_pred CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC---c-EEEEcchHHHHHhhhhhhccCCCEEEeC
Q 013461 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP---D-SILYSYGLSTMFSAIPCFCKKGDLIVAD 199 (442)
Q Consensus 124 ~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e---~-~i~~~sG~~a~~~ai~a~~~~gd~Vi~~ 199 (442)
.+|++++++.+++.. . + .+...+...++++.+|+++|.+ + ++++++|++++..++.++.+ |.|++.
T Consensus 11 ~~~~v~~a~~~~~~~----~---~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~ 80 (353)
T 2yrr_A 11 IPERVQKALLRPMRG----H---L-DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVLVL 80 (353)
T ss_dssp CCHHHHGGGGSCCCC----T---T-CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEE
T ss_pred CCHHHHHHHhccccc----c---c-CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEE
Confidence 468888888766543 1 1 1223466889999999999973 4 55567778999999988876 777777
Q ss_pred CCchHHH--HHHHHhcCCeEEEecC-----CCHHHHHHHHHh-hcccccc---------------------ccccccccc
Q 013461 200 EGVHWGI--QNGLYLSRSTVVYFKH-----NDMDSLRNTLER-VTADNKR---------------------SNSFGVLGR 250 (442)
Q Consensus 200 ~~~h~s~--~~~~~l~g~~v~~~~~-----~d~~~Le~~l~~-~~~~~~~---------------------a~~~g~~G~ 250 (442)
.+.|++. ...++..|.+++.++. .|++++++.+++ .+.-... .|+.-++-+
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D 160 (353)
T 2yrr_A 81 VNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLD 160 (353)
T ss_dssp ECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEE
T ss_pred cCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEE
Confidence 7777764 4455678899888874 478899988876 2211100 112111111
Q ss_pred CCCccc-cccCCCCCceeEEEEecccccc-CCC-cEEEcCHHhHHHHHh-h------------CCceeccCCCcHHHHHH
Q 013461 251 SGRGLT-EHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRL-S------------SSGYVFSASLPPYLASA 314 (442)
Q Consensus 251 ~g~g~~-~~~~v~~~~~diii~S~sK~lg-~~G-G~v~g~~~~i~~l~~-~------------~~~~~~s~s~~p~~aaa 314 (442)
.-.+.. ...++...+.|+++.|++|+++ ..| ||+++++++++.++. . .....+.++.++..+++
T Consensus 161 ~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 240 (353)
T 2yrr_A 161 AVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYA 240 (353)
T ss_dssp CTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHH
T ss_pred cCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHH
Confidence 101100 0011111135899999999774 445 899999998876641 0 00112334556666666
Q ss_pred HHHHHHHHhc--ChHHHHHHHHHHHHHHHhhccCCCceeecCC--CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCC
Q 013461 315 AITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNP--ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDG 390 (442)
Q Consensus 315 a~aal~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~G 390 (442)
+.++++.+++ .++++++++++++++.+.|+++ |+++..++ .+.++++.++... + ..++.+.+. ++|
T Consensus 241 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~l~-~~g 310 (353)
T 2yrr_A 241 LLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVRPPEGV-----D---ADRLVRALY-AEG 310 (353)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEECCTTC-----C---HHHHHHHHH-HTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEECCCCC-----C---HHHHHHHHH-HCC
Confidence 6678877643 3467889999999999999987 88876533 3556677763211 1 235777544 559
Q ss_pred EEEeeccCcccccCCCCCceEEEecCCCCHHHHH-HHHHHHHHHHH
Q 013461 391 VFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLV-KACESLKRISA 435 (442)
Q Consensus 391 V~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~-~~i~~l~~~~~ 435 (442)
|.+.++..+.. +..+|++++..+|++|++ +++++|+++++
T Consensus 311 i~v~~g~~~~~-----~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 311 VAVAGGIGPTR-----GQVLRLGLMGEGARREAYQAFLKALDRALA 351 (353)
T ss_dssp EECEECCGGGT-----TTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCccccC-----CCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 99988764321 345999998778999999 99999998865
No 180
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.79 E-value=2.8e-17 Score=162.49 Aligned_cols=284 Identities=17% Similarity=0.151 Sum_probs=187.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhh-------ccCCCEEE
Q 013461 125 HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-------CKKGDLIV 197 (442)
Q Consensus 125 ~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~-------~~~gd~Vi 197 (442)
+|++++++.+++++.. ++..+...++++.+|+++|.++++++++|++|+..++.++ .++||.|+
T Consensus 14 ~~~~~~a~~~~~~~~~---------~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi 84 (390)
T 3b8x_A 14 DDLEYKAIQSVLDSKM---------FTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEII 84 (390)
T ss_dssp CHHHHHHHHHHHHHTC---------CSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEE
T ss_pred CHHHHHHHHHHHHcCC---------CCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEE
Confidence 6899999999987621 2235678999999999999999999999999999999988 78999999
Q ss_pred eCCCchHHHHHHHHhcCCeEEEecCC------CHHHHHHHHHhhcccccc------------------ccccccccc--C
Q 013461 198 ADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKR------------------SNSFGVLGR--S 251 (442)
Q Consensus 198 ~~~~~h~s~~~~~~l~g~~v~~~~~~------d~~~Le~~l~~~~~~~~~------------------a~~~g~~G~--~ 251 (442)
++.+.|.++..+++..|++++.++.+ |+++|++.+++.+..... .|+.-++-+ .
T Consensus 85 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~g~~~~~~~i~~l~~~~~~~li~D~a~ 164 (390)
T 3b8x_A 85 VPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLEDNCE 164 (390)
T ss_dssp EESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEECGGGCCCCHHHHHHHHTTSCCEEEEECTT
T ss_pred ECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEECCccChhhHHHHHHHHHHcCCEEEEECcC
Confidence 99999999999999999999988865 678888777542211100 111111111 1
Q ss_pred CCcc---ccccCCCCCceeEEEEec--ccccc-CCCcEEEcCH-HhHHHHHhhC-Cc-----------------------
Q 013461 252 GRGL---TEHCGVPVDKIDIVTAAM--GHALA-TEGGFCTGSA-RVVDHQRLSS-SG----------------------- 300 (442)
Q Consensus 252 g~g~---~~~~~v~~~~~diii~S~--sK~lg-~~GG~v~g~~-~~i~~l~~~~-~~----------------------- 300 (442)
+.|. ...+|.. .|+.+.|+ +|.++ ..||++++++ ++.+.++... .+
T Consensus 165 ~~g~~~~~~~~g~~---~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 241 (390)
T 3b8x_A 165 SMGATFNNKCAGTF---GLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEES 241 (390)
T ss_dssp CTTCEETTEETTSS---SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSS
T ss_pred cccCEECCcccccc---cceEEEEccCCCCCccCCceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccc
Confidence 1111 1123322 24554443 45553 3578988875 6665543211 01
Q ss_pred e-----eccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCC-CCCE--EEEEecCCCCCch
Q 013461 301 Y-----VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP-ESPI--VFLILEKSTGSMK 372 (442)
Q Consensus 301 ~-----~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~-~~~i--~~~~~~~~~~~~~ 372 (442)
+ .++..++++.+++++++++.++ +..++.+++.+++.+.|++++++++...+ .+++ +++.+....+.
T Consensus 242 ~~~~~~g~~~~~~~~~aa~~l~~l~~l~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 316 (390)
T 3b8x_A 242 FKFVLPGYNVRPLEMSGAIGIEQLKKLP---RFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGV-- 316 (390)
T ss_dssp SCBCSCCCBCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCC--
T ss_pred cceeccccccCcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcc--
Confidence 1 1223367888888887776664 47788889999999999988788775432 2333 45555421110
Q ss_pred hhHHHHHHHHHHHHHhCCEEEeeccCcc---c-cc---------CCCC-------CceEEEecCCCCHHHHHHHHHHH
Q 013461 373 NDLQLLEDIADWALKEDGVFVVTSKRSM---L-DK---------CRLP-------VGIRLFVSAAHSEADLVKACESL 430 (442)
Q Consensus 373 ~~~~~~~~i~~~~L~~~GV~v~~~~~~~---~-~~---------~~~~-------~~iRi~~~~~~t~eei~~~i~~l 430 (442)
+ ..++.+. |.++||.+++..++. . +. ..+| ..|||+++..+|++|+++++++|
T Consensus 317 -~---~~~l~~~-L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 317 -I---RKQLVEN-LNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp -C---HHHHHHH-HHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred -c---HHHHHHH-HHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 1 2256664 566799998643211 1 10 0111 13999999999999999999876
No 181
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.79 E-value=6.6e-18 Score=173.26 Aligned_cols=311 Identities=14% Similarity=0.129 Sum_probs=201.0
Q ss_pred EEEeecCCCCCCC--CChHHHHHHHHHHHhcCCCC-CccCccccCcHHHHHHHHHHHhhhCCC----cE--EEEcchHHH
Q 013461 111 VVNFASANYLGLI--GHEKLLESCTSALEKYGVGS-CGPRGFYGTIDVHLDCEARIAKFLGTP----DS--ILYSYGLST 181 (442)
Q Consensus 111 ~id~~s~~~l~~~--~~p~v~ea~~~~l~~~g~~~-~~~~~~~g~~~~~~~le~~lA~~~g~e----~~--i~~~sG~~a 181 (442)
.+++.++.|+|.. .++.+.+++.+++..+.... ..+....+......++++.+++++|.+ .+ +++++|+++
T Consensus 93 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a 172 (514)
T 3mad_A 93 SPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTES 172 (514)
T ss_dssp HHHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHH
T ss_pred CCCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHH
Confidence 3456667777743 56888888888887643221 222333445566777888889999965 55 889999999
Q ss_pred HHhhhhhhccCC--------CEEEeCCCchHHHHHHHHhcCCeEEEecCC-----CHHHHHHHHHhhcccccc-------
Q 013461 182 MFSAIPCFCKKG--------DLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKR------- 241 (442)
Q Consensus 182 ~~~ai~a~~~~g--------d~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~~------- 241 (442)
+..++.++.++| |.|+++.+.|.++..+++..|.+++.++.+ |+++|++.+++.+.-...
T Consensus 173 ~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~npt 252 (514)
T 3mad_A 173 LLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPH 252 (514)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTT
T ss_pred HHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCC
Confidence 999999988776 999999999999999999999999999876 788898887653221100
Q ss_pred --------------ccccccccc--CCCcc----------ccccCCCCCceeEEEEeccccc-cCC-CcEEEcCHHhHHH
Q 013461 242 --------------SNSFGVLGR--SGRGL----------TEHCGVPVDKIDIVTAAMGHAL-ATE-GGFCTGSARVVDH 293 (442)
Q Consensus 242 --------------a~~~g~~G~--~g~g~----------~~~~~v~~~~~diii~S~sK~l-g~~-GG~v~g~~~~i~~ 293 (442)
.|+.-++-+ .+.+. ...+.....++|+++.|++|.+ +.. .|+++.+++.+..
T Consensus 253 G~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~ 332 (514)
T 3mad_A 253 GVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLH 332 (514)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHT
T ss_pred ccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhc
Confidence 122111111 11110 0112223356799999999996 332 3777666654433
Q ss_pred HHhh-CC--------ceeccCCCcHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEE
Q 013461 294 QRLS-SS--------GYVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFL 362 (442)
Q Consensus 294 l~~~-~~--------~~~~s~s~~p~~aaaa~aal~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~ 362 (442)
.... .. ...+.++.+.....+..++++.+.. .+++.++++++++++.+.|.+++++++..++ ..++++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~ 411 (514)
T 3mad_A 333 YQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP-LWVIAV 411 (514)
T ss_dssp TTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC-SSEEEE
T ss_pred cccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC-eEEEEE
Confidence 2110 00 0111223343333444455555432 3567889999999999999988888887543 556666
Q ss_pred EecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecC-CCCHHHHHHHHHHHHHHHHHHhhc
Q 013461 363 ILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA-AHSEADLVKACESLKRISAVVLRD 440 (442)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~-~~t~eei~~~i~~l~~~~~~~~~~ 440 (442)
..... + ..++.+. |.++||.+..... ++.+|++++. ..+++|+++++++|+++++++.++
T Consensus 412 ~~~~~------~---~~~l~~~-L~~~Gi~v~g~~~--------~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~ 472 (514)
T 3mad_A 412 ASDEL------N---IYQVMEE-MAGRGWRLNGLHR--------PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAH 472 (514)
T ss_dssp ECSSS------C---HHHHHHH-HHTTTCBCEEETT--------TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHC
T ss_pred eCCCC------C---HHHHHHH-HHhcCCEeccCCC--------CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 54211 1 2357775 4556998833322 3569999984 446799999999999999876543
No 182
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.79 E-value=4.3e-18 Score=164.34 Aligned_cols=258 Identities=14% Similarity=0.088 Sum_probs=168.0
Q ss_pred HHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHH----HhcCCeEEEecCCCHHHHHHHHH
Q 013461 158 DCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSLRNTLE 233 (442)
Q Consensus 158 ~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~----~l~g~~v~~~~~~d~~~Le~~l~ 233 (442)
++++++|+++|.++.+++++|++|+..++.++.++||.|+++.+.|.++...+ ...|.+++.++..|++++++.++
T Consensus 2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~ 81 (331)
T 1pff_A 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK 81 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhc
Confidence 68999999999999999999999999999999999999999999999887765 34789999999889999888776
Q ss_pred hhcccccc---------------------c-ccccccccC--CCccccccCCCCCceeEEEEeccccccCC----CcEEE
Q 013461 234 RVTADNKR---------------------S-NSFGVLGRS--GRGLTEHCGVPVDKIDIVTAAMGHALATE----GGFCT 285 (442)
Q Consensus 234 ~~~~~~~~---------------------a-~~~g~~G~~--g~g~~~~~~v~~~~~diii~S~sK~lg~~----GG~v~ 285 (442)
+.+.-... . |+.-++-+. +.|... ..+. .++|+++.|++|++|.+ +|+++
T Consensus 82 ~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~-~~~~-~~~d~~~~s~~K~~~~~~~r~~G~~~ 159 (331)
T 1pff_A 82 PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILT-NPLD-LGVDIVVHSATKYINGHTDVVAGLVC 159 (331)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHC-CGGG-GTCSEEEEETTTTTSSSSSCCCEEEE
T ss_pred CCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccC-Chhh-cCCcEEEEECccccCCCCCceEEEEE
Confidence 42211000 2 332222111 111110 0111 35799999999999753 58999
Q ss_pred cCH-HhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhc--------------cCCCce
Q 013461 286 GSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS--------------DIHGLS 350 (442)
Q Consensus 286 g~~-~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~--------------~~~g~~ 350 (442)
+++ ++++.++.....+ ++.+.+++.+.++.++++.+. ...++..++.+.+.+.|+ +.++++
T Consensus 160 ~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~ 235 (331)
T 1pff_A 160 SRADIIAKVKSQGIKDI-TGAIISPHDAWLITRGTLTLD---MRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHE 235 (331)
T ss_dssp ECHHHHHHHHHTCCCCC-CCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHH
T ss_pred eCcHHHHHHHHHHHHhh-cCCCCCHHHHHHHHcCcchHH---HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHH
Confidence 998 9998887654331 334567777766666666543 233333344443333332 223333
Q ss_pred eec---CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeecc---------Ccccc------------cCCC
Q 013461 351 IAS---NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK---------RSMLD------------KCRL 406 (442)
Q Consensus 351 ~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~---------~~~~~------------~~~~ 406 (442)
+.. ...++++.+.+.+ . .++.+ .|++.||++.... .+... .+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~------~-----~~~~~-~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~ 303 (331)
T 1pff_A 236 IAKKQMKMFGSMIAFDVDG------L-----EKAKK-VLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLT 303 (331)
T ss_dssp HHHHHCSSCCSEEEEECSS------H-----HHHHH-HHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCC
T ss_pred HHHhhCCCCceEEEEEECC------H-----HHHHH-HHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCC
Confidence 322 1246788887731 1 13444 5777899876542 11100 0111
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHHHH
Q 013461 407 PVGIRLFVSAAHSEADLVKACESLKRI 433 (442)
Q Consensus 407 ~~~iRi~~~~~~t~eei~~~i~~l~~~ 433 (442)
+..+|++++..+|++|+++++++|+++
T Consensus 304 ~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 304 DNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp TTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred CCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 356999999999999999999998754
No 183
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.79 E-value=5.5e-17 Score=163.71 Aligned_cols=311 Identities=14% Similarity=0.094 Sum_probs=188.7
Q ss_pred CCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhh
Q 013461 107 SGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSA 185 (442)
Q Consensus 107 ~G~~~id~~s~-~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~a 185 (442)
.|+.|+||.++ +...+ .+++.+++. . +. ..|+..+...+|+++||+++|.++++++++|++|+..+
T Consensus 40 ~~~~ylD~~~~~~~~~~--~~~~~~a~~----~-~~------~~y~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~a 106 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNAM--SDKQWAGMM----M-GD------EAYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLL 106 (456)
T ss_dssp GGGCSEECSCSSSCCCC--CHHHHHHHT----T-CC------CCSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHH
T ss_pred cccceeeeccccCCccC--CHHHHHHhh----c-ch------hhcccChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHH
Confidence 46778998665 32222 355555543 2 11 12445677889999999999999999999999999999
Q ss_pred hhhhccCCCEEEeCCCch-HHHHHHHHhcCCeEEEecCC---------------CHHHHHHHHHhhccc-ccc-------
Q 013461 186 IPCFCKKGDLIVADEGVH-WGIQNGLYLSRSTVVYFKHN---------------DMDSLRNTLERVTAD-NKR------- 241 (442)
Q Consensus 186 i~a~~~~gd~Vi~~~~~h-~s~~~~~~l~g~~v~~~~~~---------------d~~~Le~~l~~~~~~-~~~------- 241 (442)
+.+++++|| |+. .++| .++...+...|++++.++.+ |+++|++.+++.+.. .+.
T Consensus 107 l~~l~~~gd-i~~-~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~ 184 (456)
T 2ez2_A 107 SQLAIKPGQ-YVA-GNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTV 184 (456)
T ss_dssp HHHHCCTTC-EEE-ESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSB
T ss_pred HHHhCCCCC-Eec-cccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccC
Confidence 999999999 544 5555 88888899999998876432 788999988765411 000
Q ss_pred ---------------------cccccccccCCCcc----------ccccCCCC--------CceeEEEEeccccccCC-C
Q 013461 242 ---------------------SNSFGVLGRSGRGL----------TEHCGVPV--------DKIDIVTAAMGHALATE-G 281 (442)
Q Consensus 242 ---------------------a~~~g~~G~~g~g~----------~~~~~v~~--------~~~diii~S~sK~lg~~-G 281 (442)
.|++-++-+.-.+. ..+.+... ...|+++.|++|..+.+ |
T Consensus 185 n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~~g 264 (456)
T 2ez2_A 185 NLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIG 264 (456)
T ss_dssp TTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCCce
Confidence 11111111110000 00111110 12367777888876644 7
Q ss_pred cEEEc-CHHhHHHHHhhCC---ceeccCCCcHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCC
Q 013461 282 GFCTG-SARVVDHQRLSSS---GYVFSASLPPYLASA-AITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE 356 (442)
Q Consensus 282 G~v~g-~~~~i~~l~~~~~---~~~~s~s~~p~~aaa-a~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~ 356 (442)
||+++ ++++++.++.... ++....+.++..+++ +.+.++.++ ++..++.+++.+++.+.|++. |+++..+..
T Consensus 265 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~ 341 (456)
T 2ez2_A 265 GFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ--YEYIEHRVKQVRYLGDKLKAA-GVPIVEPVG 341 (456)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHT-TCCBCSSCC
T ss_pred eEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHhcC-CCccccCCC
Confidence 99988 6888877653211 111111223223233 444444332 356777788889999999885 777765556
Q ss_pred CCEEEEEecC--CCCCchhhHHHHHHHHHHHHHhCCEEEee-ccCc-cc----cc--CCCCCceEEEecCC-CCHHHHHH
Q 013461 357 SPIVFLILEK--STGSMKNDLQLLEDIADWALKEDGVFVVT-SKRS-ML----DK--CRLPVGIRLFVSAA-HSEADLVK 425 (442)
Q Consensus 357 ~~i~~~~~~~--~~~~~~~~~~~~~~i~~~~L~~~GV~v~~-~~~~-~~----~~--~~~~~~iRi~~~~~-~t~eei~~ 425 (442)
+.++++.+.. +... .+......+++.+++++||.+.+ +..+ .. .. ......+||+++.. +|++|+++
T Consensus 342 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~ 419 (456)
T 2ez2_A 342 GHAVFLDARRFCEHLT--QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDV 419 (456)
T ss_dssp SSEEEEEHHHHTTTSC--GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHH
T ss_pred ceEEEEEhHHhcCCCC--hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHH
Confidence 7788877631 1000 11000334466554566998755 2211 00 00 00124699999987 89999999
Q ss_pred HHHHHHHHHHHH
Q 013461 426 ACESLKRISAVV 437 (442)
Q Consensus 426 ~i~~l~~~~~~~ 437 (442)
++++|++++++.
T Consensus 420 ~~~~l~~~l~~~ 431 (456)
T 2ez2_A 420 VADGIIKLYQHK 431 (456)
T ss_dssp HHHHHHHHHHTG
T ss_pred HHHHHHHHHhhh
Confidence 999999988654
No 184
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.79 E-value=2.5e-19 Score=177.40 Aligned_cols=257 Identities=11% Similarity=0.034 Sum_probs=167.5
Q ss_pred HHHHHHHHHhhhC-------CC-cEEEEcchHHHHHhhhhhhccCCC----EEEeCCCchHHHHHHHHhcCCeEEEecCC
Q 013461 156 HLDCEARIAKFLG-------TP-DSILYSYGLSTMFSAIPCFCKKGD----LIVADEGVHWGIQNGLYLSRSTVVYFKHN 223 (442)
Q Consensus 156 ~~~le~~lA~~~g-------~e-~~i~~~sG~~a~~~ai~a~~~~gd----~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~ 223 (442)
+.+|++.+|++++ .+ ++++++++++++..++.+++++|| .|+++.++|..+...++..|++++.++.+
T Consensus 70 ~~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d 149 (391)
T 3bwn_A 70 EPELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGD 149 (391)
T ss_dssp CHHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCC
Confidence 3788999998887 33 566666667999999999999999 99999999999999999999888777642
Q ss_pred CHHHHHHHHHhhcc-------cccc----------ccc--ccccccCCCccccccCCC-CCceeEEEEeccccccCCC--
Q 013461 224 DMDSLRNTLERVTA-------DNKR----------SNS--FGVLGRSGRGLTEHCGVP-VDKIDIVTAAMGHALATEG-- 281 (442)
Q Consensus 224 d~~~Le~~l~~~~~-------~~~~----------a~~--~g~~G~~g~g~~~~~~v~-~~~~diii~S~sK~lg~~G-- 281 (442)
.+.++ ...++ .++. .|+ .-++-+.-.....+..+. ..+.+|+++||||++|+.|
T Consensus 150 -~~~l~---~~~~k~v~l~~p~NPtG~~~~~l~~~~~~~~~~ii~De~y~~~~~~~l~~~~~~~i~~~S~SK~~g~~GlR 225 (391)
T 3bwn_A 150 -AWGFD---KKGPYIELVTSPNNPDGTIRETVVNRPDDDEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSKITGHAGSR 225 (391)
T ss_dssp -STTCC---CCSCEEEEEESSCTTTCCCCCCCC-----CCCEEEEECTTCSTTTSCCCCCBCCSEEEEEHHHHHSCGGGC
T ss_pred -HHHcC---CCCCEEEEECCCCCCCchhHHHHHHHhhcCCCEEEEeCCCCCCCCCccccCCCCeEEEEechhhcCCCccc
Confidence 22222 01000 0000 122 111111000000000011 2457899999999999877
Q ss_pred -cEEEc-CHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHh-----------cChHHHHHHHHHHHHHHHhhccCCC
Q 013461 282 -GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-----------ENPDLITKLKKNTAILRTGLSDIHG 348 (442)
Q Consensus 282 -G~v~g-~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~-----------~~~~~~~~l~~~~~~l~~~L~~~~g 348 (442)
||+++ ++++++.+...... . ..+.+++.+.++.++++... ...++++.++++++++.+.|+++++
T Consensus 226 iG~~~~~~~~l~~~l~~~~~~-~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 303 (391)
T 3bwn_A 226 IGWALVKDKEVAKKMVEYIIV-N-SIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDA 303 (391)
T ss_dssp EEEEEECCHHHHHHHHHHHHH-H-HSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred eEEEEecCHHHHHHHHHHhcc-c-ccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99986 88998887654321 1 22346666666667776431 2345788899999999999988766
Q ss_pred ceeecC-------------CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEec
Q 013461 349 LSIASN-------------PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS 415 (442)
Q Consensus 349 ~~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~ 415 (442)
+++..+ +.+.++++.++.. +.+..+|+++||.+.++..+.. .+..+||+++
T Consensus 304 ~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~------------~~~~~~l~~~gV~v~pg~~fg~----~~~~iRis~~ 367 (391)
T 3bwn_A 304 FTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE------------TDLVSELRRHKVMSRAGERCGS----DKKHVRVSML 367 (391)
T ss_dssp EECCCCCCEEETTTTEEECCCCSEEEEEESSS------------CCHHHHHHHTTEECEEGGGGTC----CTTEEEEESC
T ss_pred cccccCCccccccccccCCCcceEEEecCCcH------------HHHHHHHHHCCEEEccCCCCCC----CCCEEEEEec
Confidence 665422 2233677777421 1233356778999999876532 1356999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 013461 416 AAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 416 ~~~t~eei~~~i~~l~~~~~~ 436 (442)
. +++++++++++|++++++
T Consensus 368 ~--~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 368 S--REDVFNVFLERLANMKLI 386 (391)
T ss_dssp S--CHHHHHHHHHHHHSCC--
T ss_pred C--CHHHHHHHHHHHHHHHHh
Confidence 4 899999999999887643
No 185
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.78 E-value=1.2e-17 Score=164.63 Aligned_cols=272 Identities=14% Similarity=0.090 Sum_probs=176.0
Q ss_pred cHHHHHHHHHHHhhhCCCcEEEE-cchHHHHHhhhhhhccCCCEEEeCCCchHHHH--HHHHhcC--CeEEEec------
Q 013461 153 IDVHLDCEARIAKFLGTPDSILY-SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQ--NGLYLSR--STVVYFK------ 221 (442)
Q Consensus 153 ~~~~~~le~~lA~~~g~e~~i~~-~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~--~~~~l~g--~~v~~~~------ 221 (442)
.+...++++.+++++|.++.+++ ++|++++..++.. .++||.|++..+.|.+.. ..+...| .+++.++
T Consensus 34 ~~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~-~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 112 (379)
T 3ke3_A 34 QEVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQ-LTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTED 112 (379)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHH-HCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHh-CCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEecccccc
Confidence 36678899999999998765555 6889999988865 468998887766665532 2233334 3555543
Q ss_pred --------CCCHHHHHHHHHhh-cccccc------------------------ccccccccc--CCCccccccCCCCCce
Q 013461 222 --------HNDMDSLRNTLERV-TADNKR------------------------SNSFGVLGR--SGRGLTEHCGVPVDKI 266 (442)
Q Consensus 222 --------~~d~~~Le~~l~~~-~~~~~~------------------------a~~~g~~G~--~g~g~~~~~~v~~~~~ 266 (442)
..|++++++.++.. +..... .|+.-++-+ .+ |. ..+++...++
T Consensus 113 ~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~-~~~~~~~~~~ 190 (379)
T 3ke3_A 113 TEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GC-VWLDMKELGI 190 (379)
T ss_dssp CSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TT-CCCCHHHHTC
T ss_pred ccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CC-ccccccccCC
Confidence 35888999888642 211100 122111111 11 11 1112211257
Q ss_pred eEEEEeccccccCC-C-cEEEcCHHhHHHHHhhC-Ccee-------------------ccCCCcHHHHHHHHHHHHHHhc
Q 013461 267 DIVTAAMGHALATE-G-GFCTGSARVVDHQRLSS-SGYV-------------------FSASLPPYLASAAITAIDVLEE 324 (442)
Q Consensus 267 diii~S~sK~lg~~-G-G~v~g~~~~i~~l~~~~-~~~~-------------------~s~s~~p~~aaaa~aal~~l~~ 324 (442)
|+++.|++|+++.+ | |++++++++++.+.... .++. ++.+.|+..++++.++++.+++
T Consensus 191 d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~ 270 (379)
T 3ke3_A 191 DVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKE 270 (379)
T ss_dssp SEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999653 3 89999999998886521 2221 2235677777777789988765
Q ss_pred C--hHHHHHHHHHHHHHHHhhccCCCceeecCC--CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcc
Q 013461 325 N--PDLITKLKKNTAILRTGLSDIHGLSIASNP--ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM 400 (442)
Q Consensus 325 ~--~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~ 400 (442)
. +++.++.+++.+++++.|+++ |+++..++ .++++.....+. .+ . ...+ .|.++||.+.++..+.
T Consensus 271 ~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~-----~~---~-~~~~-~L~~~Gi~v~~g~~~~ 339 (379)
T 3ke3_A 271 IGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTER-----DD---M-HKGS-AFAEAGLQIAAGVPLK 339 (379)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSC-----HH---H-HSSH-HHHHTTCCCEECCCCS
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccCC-----cc---h-HHHH-HHHHCCeEEeCCcccc
Confidence 3 578889999999999999987 88776433 256544333211 11 1 1233 4566799999876544
Q ss_pred cccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHh
Q 013461 401 LDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 438 (442)
Q Consensus 401 ~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~ 438 (442)
+........+|++++..+|++||++++++|+++++++.
T Consensus 340 ~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 340 VGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp SCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 32111135699999999999999999999999988764
No 186
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.78 E-value=1.2e-17 Score=165.15 Aligned_cols=290 Identities=15% Similarity=0.160 Sum_probs=187.8
Q ss_pred ChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhh-ccCCCEEEeCCCch
Q 013461 125 HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVH 203 (442)
Q Consensus 125 ~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~-~~~gd~Vi~~~~~h 203 (442)
++++++++.+.+... .. .+..+...++++.+|+++|.++++++++|++|+..++.++ .++||.|+++.+.|
T Consensus 35 ~~~~~~a~~~~~~~~-~~-------~~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~ 106 (391)
T 3dr4_A 35 DGNERDYVLECMDTT-WI-------SSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTY 106 (391)
T ss_dssp CSSHHHHHHHHHHHT-CC-------SSCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSC
T ss_pred CHHHHHHHHHHHHcC-Cc-------cCCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCch
Confidence 478999999888762 11 0235678999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHhcCCeEEEecCC------CHHHHHHHHHhhcccccc------------------cccccccccC--CCcccc
Q 013461 204 WGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKR------------------SNSFGVLGRS--GRGLTE 257 (442)
Q Consensus 204 ~s~~~~~~l~g~~v~~~~~~------d~~~Le~~l~~~~~~~~~------------------a~~~g~~G~~--g~g~~~ 257 (442)
.++..+++..|.+++.++.+ |++++++.+++.+..... .++.-++-+. +.|..
T Consensus 107 ~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~- 185 (391)
T 3dr4_A 107 IASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGAT- 185 (391)
T ss_dssp THHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCTTEEEECCBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCE-
T ss_pred HHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcCCCceEEEEECCCCChhhHHHHHHHHHHcCCEEEEECcccccce-
Confidence 99999999999999998865 677777666432211100 1111111111 11111
Q ss_pred ccCCCCCc-eeEEEEecc--cccc-CCCcEEEcC-HHhHHHHHhhC-Cc------e-----eccCCCcHHHHHHHHHHHH
Q 013461 258 HCGVPVDK-IDIVTAAMG--HALA-TEGGFCTGS-ARVVDHQRLSS-SG------Y-----VFSASLPPYLASAAITAID 320 (442)
Q Consensus 258 ~~~v~~~~-~diii~S~s--K~lg-~~GG~v~g~-~~~i~~l~~~~-~~------~-----~~s~s~~p~~aaaa~aal~ 320 (442)
..+..... .|+++.||+ |+++ ..||+++.+ +++++.++... .+ + .+...++++.++++...++
T Consensus 186 ~~~~~~~~~~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~ 265 (391)
T 3dr4_A 186 YRGKKSGSLGDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLE 265 (391)
T ss_dssp ETTEETTSSSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHH
T ss_pred ECCeeecccCCEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHH
Confidence 00110011 257777766 9996 346777654 55766554321 01 1 1123456777776655554
Q ss_pred HHhcChHHHHHHHHHHHHHHHhhccCCCceeecC--C-----CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEE
Q 013461 321 VLEENPDLITKLKKNTAILRTGLSDIHGLSIASN--P-----ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 393 (442)
Q Consensus 321 ~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~--~-----~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v 393 (442)
.+ ++..++.+++.+++++.|.++ |+.+... + ...++++.+....+. + ..++.+. |.++||.+
T Consensus 266 ~~---~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~---~~~l~~~-L~~~GI~v 334 (391)
T 3dr4_A 266 RV---DEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRLGEGLST---T---RDQVIKD-LDALGIES 334 (391)
T ss_dssp TH---HHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEECSSCSS---C---HHHHHHH-HHHTTCCC
T ss_pred HH---HHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEECCccch---h---HHHHHHH-HHHCCCce
Confidence 44 346788888999999999987 8776543 1 122456666431110 1 2356765 55569999
Q ss_pred eeccCcccc--------cCCCC-------CceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 394 VTSKRSMLD--------KCRLP-------VGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 394 ~~~~~~~~~--------~~~~~-------~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
+++..+... ...+| ..+|++++..+|++||++++++|++++
T Consensus 335 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 335 RPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp EECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred eecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 976532110 00111 239999999999999999999998753
No 187
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.78 E-value=2.4e-18 Score=167.89 Aligned_cols=283 Identities=15% Similarity=0.150 Sum_probs=180.7
Q ss_pred ChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhccCCCE--EEeCCCc
Q 013461 125 HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDL--IVADEGV 202 (442)
Q Consensus 125 ~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~--Vi~~~~~ 202 (442)
+|++++++.+.+.. ..|+..+...++++++|+++|.+..+++++|++|+..++.+++++||. |+++..+
T Consensus 28 ~p~v~~ai~~~~~~---------~~~~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~ 98 (359)
T 3pj0_A 28 LTEALQNIDDNLES---------DIYGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLS 98 (359)
T ss_dssp HHHHTTTSCTTCBC---------CBTTBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTC
T ss_pred CHHHHHHHHhhccc---------CcccCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccc
Confidence 57777777662211 235566788999999999999998899999999999999999888885 7788888
Q ss_pred hHHHHH--HH-HhcCCeEEEecCC----CHHHHHHHHHhhcccccc----------------------------cccccc
Q 013461 203 HWGIQN--GL-YLSRSTVVYFKHN----DMDSLRNTLERVTADNKR----------------------------SNSFGV 247 (442)
Q Consensus 203 h~s~~~--~~-~l~g~~v~~~~~~----d~~~Le~~l~~~~~~~~~----------------------------a~~~g~ 247 (442)
|..... .+ ...|.+++.++.+ |++++++. . ++.+. .|++-+
T Consensus 99 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~l 174 (359)
T 3pj0_A 99 HLEIHEQDGLKELQQITPLLLGTANQLLTIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISL 174 (359)
T ss_dssp HHHHSSTTHHHHHHCCEEEECSCTTSCCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEE
T ss_pred eeeehhcchHHHhcCceEEecCCcCCCcCHHHHHhc-c---CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 876532 22 4578898888754 66777665 2 11111 122211
Q ss_pred cccC--CCccccccCCCC----CceeEEEEeccccccCC-CcEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHH
Q 013461 248 LGRS--GRGLTEHCGVPV----DKIDIVTAAMGHALATE-GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAID 320 (442)
Q Consensus 248 ~G~~--g~g~~~~~~v~~----~~~diii~S~sK~lg~~-GG~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~ 320 (442)
+-+. ..+...+.+..+ ...|+++.|+||++++. ||++++++++++.++.....+..+.......++++..+++
T Consensus 175 i~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 254 (359)
T 3pj0_A 175 HLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILAGNDDFVQEAKIWKRRYGGDLISLYPYILSADYYFE 254 (359)
T ss_dssp EEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHH
T ss_pred EEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcceEEEECCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 1110 011111112211 24588889999999654 5788999999988764221111111122333344445555
Q ss_pred HHhcChHHHHHHHHHHHHHHHhhccCCCceee-cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCc
Q 013461 321 VLEENPDLITKLKKNTAILRTGLSDIHGLSIA-SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRS 399 (442)
Q Consensus 321 ~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~ 399 (442)
... +..++++++++++.+.|++++|+++. .++.++++++.+..+ ......++.+. |.++||.+.++..+
T Consensus 255 ~~~---~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~-l~~~GV~v~~g~~~ 324 (359)
T 3pj0_A 255 KRI---GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENS------ADEIGAILTKI-QDETGVGISGYLQE 324 (359)
T ss_dssp HHG---GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSC------HHHHHHHHHHH-HHHHCEECCSCCEE
T ss_pred HHH---HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCc------cchhHHHHHHH-HHhcCcEecCCccc
Confidence 432 34556788899999999988888875 456788888888532 11223456665 45569999987654
Q ss_pred ccccCCCCCceEEEecCC---CCHHHHHHHHHHHHHH
Q 013461 400 MLDKCRLPVGIRLFVSAA---HSEADLVKACESLKRI 433 (442)
Q Consensus 400 ~~~~~~~~~~iRi~~~~~---~t~eei~~~i~~l~~~ 433 (442)
..+. ...+|+++... .+.+++++++++|+++
T Consensus 325 ~~~~---~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 325 KSAD---VCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp EETT---EEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred cCCC---ceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 3210 13489988643 5788999888888764
No 188
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.78 E-value=2.8e-17 Score=162.76 Aligned_cols=264 Identities=14% Similarity=0.022 Sum_probs=176.8
Q ss_pred CcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHH----HhcCCeEEEecCCCHHH
Q 013461 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDS 227 (442)
Q Consensus 152 ~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~----~l~g~~v~~~~~~d~~~ 227 (442)
..+...+++++||+++|.++++++++|++|+..++.+++++||.|++..+.|+++...+ ...|.++.+++.+|+++
T Consensus 64 ~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~ 143 (392)
T 3qhx_A 64 GNPTRTALEAALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDA 143 (392)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCHHH
T ss_pred CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCHHH
Confidence 34667899999999999999999999999999999999999999999999998877665 56789999999999999
Q ss_pred HHHHHHhhcccccc---------------------cccccccccC--CCccccccCCCCCceeEEEEeccccccCC----
Q 013461 228 LRNTLERVTADNKR---------------------SNSFGVLGRS--GRGLTEHCGVPVDKIDIVTAAMGHALATE---- 280 (442)
Q Consensus 228 Le~~l~~~~~~~~~---------------------a~~~g~~G~~--g~g~~~~~~v~~~~~diii~S~sK~lg~~---- 280 (442)
+++.+++.+..... .|+.-++-+. +.+.. ......++|+++.|++|.+|..
T Consensus 144 l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~--~~~~~~~~di~~~S~sK~lg~~g~~~ 221 (392)
T 3qhx_A 144 VRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL--QQPLSLGADVVLHSTTKYIGGHSDVV 221 (392)
T ss_dssp HHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT--CCGGGGTCSEEEEETTTTTTCSSCCC
T ss_pred HHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc--CChHHhCCcEEEEcCccccCCCCCce
Confidence 99888653221100 2222111111 11110 0000124689999999999753
Q ss_pred CcEEEcC-HHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecC-----
Q 013461 281 GGFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASN----- 354 (442)
Q Consensus 281 GG~v~g~-~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~----- 354 (442)
||+++++ +++++.++.... .++...+|+.++++...++.+ ....++..++.+++.+.|.+.+.+.....
T Consensus 222 ~G~v~~~~~~~~~~l~~~~~--~~g~~~~~~~~~~~~~~l~~l---~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~ 296 (392)
T 3qhx_A 222 GGALVTNDEELDQSFAFLQN--GAGAVPGPFDAYLTMRGLKTL---VLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPS 296 (392)
T ss_dssp CEEEEESCHHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTT
T ss_pred EEEEEECcHHHHHHHHHHHH--hcCCCCCHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCC
Confidence 6888887 678777765432 234556788877776666554 33567777888888888877655432211
Q ss_pred ------------CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCccc-------c--------cCCCC
Q 013461 355 ------------PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML-------D--------KCRLP 407 (442)
Q Consensus 355 ------------~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~-------~--------~~~~~ 407 (442)
..+.++++.++.. .....++.+. |+..|+.+..+..... . .+..+
T Consensus 297 ~~~~~~~~~~~~g~g~~~~~~l~~~-------~~~~~~~~~~-l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~ 368 (392)
T 3qhx_A 297 HPGHAVAARQMRGFGGMVSVRMRAG-------RTAAEQLCAK-TNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPD 368 (392)
T ss_dssp STTHHHHHHHCSSCCSEEEEEETTC-------HHHHHHHHHH-CSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCT
T ss_pred CCCHHHHHHhCCCCceEEEEEeCCc-------HHHHHHHHHh-CCCceECCCCCCCCceeeCcccccccccCHHHcCCCC
Confidence 1266888888431 1224456653 5555777665443211 0 01124
Q ss_pred CceEEEecCCCCHHHHHHHHHHH
Q 013461 408 VGIRLFVSAAHSEADLVKACESL 430 (442)
Q Consensus 408 ~~iRi~~~~~~t~eei~~~i~~l 430 (442)
+.||||++...++++++.+.++|
T Consensus 369 ~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 369 DLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp TEEEEECCSSCHHHHHHHHHHHH
T ss_pred CeEEEEeccCCHHHHHHHHHHHh
Confidence 55999999887777777776665
No 189
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.78 E-value=4.8e-17 Score=158.48 Aligned_cols=286 Identities=13% Similarity=0.020 Sum_probs=187.8
Q ss_pred CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCC---CcEEEEcchHHHHHhhhhhhccCCCEEEeCC
Q 013461 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT---PDSILYSYGLSTMFSAIPCFCKKGDLIVADE 200 (442)
Q Consensus 124 ~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~---e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~ 200 (442)
.+|++++++.+++.+.-.+. +++ .....+...++++.+++++|. ++++++++|++++..++.++.++ +++++..
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~ 91 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVI-SHR-SKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVEK-KSFHCVN 91 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTS-CTT-SHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEEC
T ss_pred CCHHHHHHHHHHhcCCccCc-CCC-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcC
Confidence 36899999988887621111 111 223346788999999999986 24677788899999999999988 7777777
Q ss_pred CchHH-HHHHHHhcCCeEEEecCC-----CHHHHHHHHHhhcccccc------------------------cc-cccccc
Q 013461 201 GVHWG-IQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKR------------------------SN-SFGVLG 249 (442)
Q Consensus 201 ~~h~s-~~~~~~l~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~~------------------------a~-~~g~~G 249 (442)
+.|.. ....++..|++++.++.+ |+++++ + +++.+. .| +.-++-
T Consensus 92 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~---~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~ 166 (362)
T 3ffr_A 92 GSFSKRFYEFAGELGREAYKEEAAFGKGFYPADIT--V---PADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFV 166 (362)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCTTCCCCGGGCC--C---CTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEE
T ss_pred cHHHHHHHHHHHHhCCCeEEEecCCCCCCCHHHHh--c---cCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEE
Confidence 76653 334566778888887643 566666 2 222111 22 222221
Q ss_pred cCCCccccccCCCCCceeEEEEecccccc-CCC-cEEEcCHHhHHHHHhhCC-----ce--------------eccCCCc
Q 013461 250 RSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLSSS-----GY--------------VFSASLP 308 (442)
Q Consensus 250 ~~g~g~~~~~~v~~~~~diii~S~sK~lg-~~G-G~v~g~~~~i~~l~~~~~-----~~--------------~~s~s~~ 308 (442)
+.-.+.. ....+..++|+++.|++|+++ ..| |++++++++++.++.... ++ ....+.+
T Consensus 167 D~a~~~~-~~~~~~~~~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (362)
T 3ffr_A 167 DAVSSLP-YPKFDWTKIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPN 245 (362)
T ss_dssp ECTTTTT-SSCCCTTSCSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCC
T ss_pred ecccccC-CcccChhHCcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCch
Confidence 1111100 011122348999999999998 555 889999998877654321 11 0123445
Q ss_pred HHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHhhccCCCceeecC----CCCCEEEEEecCCCCCchhhHHHHHHHH
Q 013461 309 PYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASN----PESPIVFLILEKSTGSMKNDLQLLEDIA 382 (442)
Q Consensus 309 p~~aaaa~aal~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~i~ 382 (442)
...+.++.++++.+.+ .++++++.+++++++.+.|++++|+++..+ ....++++.++. ...++.
T Consensus 246 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 315 (362)
T 3ffr_A 246 AMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM----------LPGEIN 315 (362)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS----------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC----------CHHHHH
Confidence 5555566677776543 256888899999999999998888887641 235677777642 123677
Q ss_pred HHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 383 DWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 383 ~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
+. |.++||.+.++..+.. +..+|++++..+|++|+++++++|++++
T Consensus 316 ~~-l~~~gi~~~~g~~~~~-----~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 316 KI-LEPFDMAVGAGYGSKK-----ETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp HH-HGGGTEEEEECSGGGT-----TTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HH-HHHCCeEEecCccccC-----CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 76 4455999998644321 2459999999999999999999998763
No 190
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.78 E-value=4.7e-17 Score=160.66 Aligned_cols=263 Identities=12% Similarity=0.079 Sum_probs=173.7
Q ss_pred cHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHH----HhcCCeEEEecCCCHHHH
Q 013461 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSL 228 (442)
Q Consensus 153 ~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~----~l~g~~v~~~~~~d~~~L 228 (442)
.+...++++++|+++|.++.+++++|++|+..++.++.++||.|+++.+.|.++...+ +..|.+++.++.+|++++
T Consensus 51 ~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l 130 (386)
T 1cs1_A 51 NPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQAL 130 (386)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHH
T ss_pred CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHH
Confidence 4667899999999999889999999999999999999999999999999998866543 567889999999999999
Q ss_pred HHHHHhhcccccc---------------------cccccccccC--CCccccccCCCCCceeEEEEeccccccCCC----
Q 013461 229 RNTLERVTADNKR---------------------SNSFGVLGRS--GRGLTEHCGVPVDKIDIVTAAMGHALATEG---- 281 (442)
Q Consensus 229 e~~l~~~~~~~~~---------------------a~~~g~~G~~--g~g~~~~~~v~~~~~diii~S~sK~lg~~G---- 281 (442)
++.+++.+..... .|+.-++-+. +.+... ..+ ..+.|+++.|++|++|.+|
T Consensus 131 ~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~-~~~-~~~~di~~~s~sK~~~~~~~~~~ 208 (386)
T 1cs1_A 131 RAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQ-NPL-ALGADLVLHSCTKYLNGHSDVVA 208 (386)
T ss_dssp HHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CGG-GGTCSEEEEETTTTTTCSSCCCC
T ss_pred HHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-Ccc-ccCceEEEEcCcccccCCCCcee
Confidence 9988753221100 1221111110 001100 011 1346899999999997543
Q ss_pred cEEEcCH-HhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceee--------
Q 013461 282 GFCTGSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA-------- 352 (442)
Q Consensus 282 G~v~g~~-~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~-------- 352 (442)
|++++++ ++++.++..... ++.+.+|..++++.++++.+ +...+++.++.+++.+.|.+++.+.-.
T Consensus 209 G~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~ 283 (386)
T 1cs1_A 209 GVVIAKDPDVVTELAWWANN--IGVTGGAFDSYLLLRGLRTL---VPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPEN 283 (386)
T ss_dssp EEEEESSHHHHHHHHHHHHH--HTCBCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTS
T ss_pred EEEEeCcHHHHHHHHHHHHh--cCCCCCHHHHHHHHhcccHH---HHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCC
Confidence 8988876 788877654322 33456787777666666544 345666777788887777665433211
Q ss_pred ------c---CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccC---------ccc-cc----------
Q 013461 353 ------S---NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR---------SML-DK---------- 403 (442)
Q Consensus 353 ------~---~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~---------~~~-~~---------- 403 (442)
. ...++++.+.+... ..++.+ .|++.||.+..... |.. .+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~ 352 (386)
T 1cs1_A 284 QGHEIAARQQKGFGAMLSFELDGD----------EQTLRR-FLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAA 352 (386)
T ss_dssp TTHHHHHHHCSSCCSEEEEEESSC----------HHHHHH-HHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHH
T ss_pred ccHHHHHHhcCCCceEEEEEECCC----------HHHHHH-HHHhCCcceEcccCCCcceeeecccccccccCCHHHHHh
Confidence 0 12377888887421 113444 56677998864211 100 00
Q ss_pred -CCCCCceEEEecCCCCHHHHHHHHHHHHHH
Q 013461 404 -CRLPVGIRLFVSAAHSEADLVKACESLKRI 433 (442)
Q Consensus 404 -~~~~~~iRi~~~~~~t~eei~~~i~~l~~~ 433 (442)
+..+..+|++++..+++++++.+.++|+++
T Consensus 353 ~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 353 AGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp HTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 011356999999988888888888887764
No 191
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.78 E-value=1.6e-17 Score=163.44 Aligned_cols=264 Identities=12% Similarity=0.083 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHhhhCC------CcEEEEcchHHHHHhhhhhhc---cCCCEEEeC-CCchHHH-HHHHHhcCCeEEEecC
Q 013461 154 DVHLDCEARIAKFLGT------PDSILYSYGLSTMFSAIPCFC---KKGDLIVAD-EGVHWGI-QNGLYLSRSTVVYFKH 222 (442)
Q Consensus 154 ~~~~~le~~lA~~~g~------e~~i~~~sG~~a~~~ai~a~~---~~gd~Vi~~-~~~h~s~-~~~~~l~g~~v~~~~~ 222 (442)
+...+++++++++++. ++++++++|++++..++.++. ++||.|++. .+++... ...++..|.+++.++.
T Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~ 117 (385)
T 2bkw_A 38 SIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRP 117 (385)
T ss_dssp HHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEec
Confidence 3567788999998875 456777888999999999987 899987554 5454444 4677788999988876
Q ss_pred ------CCHHHHHHHHHh-hcccccc---------------------cc--ccccccc--CCCccccccCCCCCceeEEE
Q 013461 223 ------NDMDSLRNTLER-VTADNKR---------------------SN--SFGVLGR--SGRGLTEHCGVPVDKIDIVT 270 (442)
Q Consensus 223 ------~d~~~Le~~l~~-~~~~~~~---------------------a~--~~g~~G~--~g~g~~~~~~v~~~~~diii 270 (442)
.|+++|++.+++ .+.-... .| +.-++-+ .+.|.. .+++...++|+++
T Consensus 118 ~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~-~~~~~~~~~d~~~ 196 (385)
T 2bkw_A 118 LKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCE-EFEFDEWGVDFAL 196 (385)
T ss_dssp SSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTS-CCCTTTTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCc-cccccccCceEEE
Confidence 378899988875 2211000 23 2222211 111111 1223223579999
Q ss_pred Eecccccc-CCC-cEEEcCHHhHH-HHHh-----------------------hCCceeccCCCcHHHHHHHHHHHHHHhc
Q 013461 271 AAMGHALA-TEG-GFCTGSARVVD-HQRL-----------------------SSSGYVFSASLPPYLASAAITAIDVLEE 324 (442)
Q Consensus 271 ~S~sK~lg-~~G-G~v~g~~~~i~-~l~~-----------------------~~~~~~~s~s~~p~~aaaa~aal~~l~~ 324 (442)
.|++|+++ ..| |+++++++.++ .++. ......+..+.++..++++.++++.+++
T Consensus 197 ~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 276 (385)
T 2bkw_A 197 TASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILE 276 (385)
T ss_dssp EESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred ecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999875 456 89999998876 4310 0000011234566666667778887653
Q ss_pred --ChHHHHHHHHHHHHHHHhh-ccCCCceeecC-----CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeec
Q 013461 325 --NPDLITKLKKNTAILRTGL-SDIHGLSIASN-----PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTS 396 (442)
Q Consensus 325 --~~~~~~~l~~~~~~l~~~L-~~~~g~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~ 396 (442)
.++++++++++++++.+.| +++ |+++..+ ..++++++.++. ..++.+. |.++||.+.++
T Consensus 277 ~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~-l~~~gi~v~~g 343 (385)
T 2bkw_A 277 EGLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVAD-----------PPDVIAF-LKSHGVVIAGG 343 (385)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECSC-----------HHHHHHH-HHHTTEECBCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhc-CceecccCcccccCCceEEEecCC-----------HHHHHHH-HHHCCeEEeCC
Confidence 3567888999999999999 887 8877642 246778887631 2356765 45679999876
Q ss_pred cCcccccCCCCCceEEE-ec---CCCCHHHHHHHHHHHHHHHH
Q 013461 397 KRSMLDKCRLPVGIRLF-VS---AAHSEADLVKACESLKRISA 435 (442)
Q Consensus 397 ~~~~~~~~~~~~~iRi~-~~---~~~t~eei~~~i~~l~~~~~ 435 (442)
..+.. .+..+|++ ++ ..+|++|+++++++|+++++
T Consensus 344 ~~~~~----~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~ 382 (385)
T 2bkw_A 344 IHKDI----GPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 382 (385)
T ss_dssp CCTTT----GGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred CCccc----CCCEEEEEccccccccCCHHHHHHHHHHHHHHHH
Confidence 54211 12459999 65 24799999999999998754
No 192
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.77 E-value=1.9e-17 Score=169.20 Aligned_cols=319 Identities=15% Similarity=0.119 Sum_probs=202.7
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC-------cEEEEcchH
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-------DSILYSYGL 179 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e-------~~i~~~sG~ 179 (442)
+|+..+|+++ |.....+|.+.+++.+++........ ...+..++..++++.+++++|.+ ..+++++|+
T Consensus 53 ~gnp~~~l~s--~~t~~~~~~v~~~l~~~~~~~~~~~~---~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggt 127 (502)
T 3hbx_A 53 DGNPRLNLAS--FVTTWMEPECDKLIMSSINKNYVDMD---EYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSS 127 (502)
T ss_dssp SCCGGGBTTC--CSCCCCCHHHHHHHHHTTTCBTTCTT---TCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHH
T ss_pred CCCCCceecc--ccCCCCCHHHHHHHHHHhccCCCChh---cChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHH
Confidence 4555555544 23333578999999888766332221 12235677778888999999976 345688999
Q ss_pred HHHHhhhhhhccC--------CC-----EEEeCCCchHHHHHHHHhcCCeEEEecCC------CHHHHHHHHHhhccccc
Q 013461 180 STMFSAIPCFCKK--------GD-----LIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNK 240 (442)
Q Consensus 180 ~a~~~ai~a~~~~--------gd-----~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~------d~~~Le~~l~~~~~~~~ 240 (442)
+++..++.++..+ || .|+++...|.++..+++..|++++.++.+ |+++|++.+++.+....
T Consensus 128 ea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~ 207 (502)
T 3hbx_A 128 EAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVA 207 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEE
T ss_pred HHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhhCCEEEE
Confidence 9999888877655 77 89999999999999999999999888743 67777777665332110
Q ss_pred c---------------------cc------ccccc--ccCCCcc----ccc--cCCCCCceeEEEEeccccccC-CC-cE
Q 013461 241 R---------------------SN------SFGVL--GRSGRGL----TEH--CGVPVDKIDIVTAAMGHALAT-EG-GF 283 (442)
Q Consensus 241 ~---------------------a~------~~g~~--G~~g~g~----~~~--~~v~~~~~diii~S~sK~lg~-~G-G~ 283 (442)
. .+ +.-++ +..+.+. ... +.+....+|+++.|.+|.++. .| |+
T Consensus 208 ~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~ 287 (502)
T 3hbx_A 208 AILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGW 287 (502)
T ss_dssp EEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEE
T ss_pred EecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEE
Confidence 0 22 22222 1122111 111 112224789999999999843 22 54
Q ss_pred -EEcCHHhHH-HHHhhC-------CceeccCCCcHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHhhccCCCceee
Q 013461 284 -CTGSARVVD-HQRLSS-------SGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIA 352 (442)
Q Consensus 284 -v~g~~~~i~-~l~~~~-------~~~~~s~s~~p~~aaaa~aal~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g~~~~ 352 (442)
++.+++.+. .+.... ..+.+..+.+...+.+..++++.+. ...++.++..++.++|.+.|.+++++++.
T Consensus 288 ~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 367 (502)
T 3hbx_A 288 VIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIV 367 (502)
T ss_dssp EEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEC
T ss_pred EEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 455555442 111100 0111223333333344445555443 23567888899999999999998679887
Q ss_pred cC-CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHH
Q 013461 353 SN-PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLK 431 (442)
Q Consensus 353 ~~-~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~ 431 (442)
.+ +..+++.+.+..... .+ ..++.+. |.++||.+.....+..... ...+|++++..+|++|++.+++.|+
T Consensus 368 ~~~~~~~~v~f~~~~~~~---~~---~~~l~~~-L~~~Gi~v~~~~~p~~~~~--~~~lRisv~~~~t~edid~li~~L~ 438 (502)
T 3hbx_A 368 SKDEGVPLVAFSLKDSSC---HT---EFEISDM-LRRYGWIVPAYTMPPNAQH--ITVLRVVIREDFSRTLAERLVIDIE 438 (502)
T ss_dssp SCSSSSSEEEEEESSCSS---CC---HHHHHHH-HHTTTCBCCEEECCTTCTT--CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred eCCCCceEEEEEecCCCc---CC---HHHHHHH-HHhCCcEEeeccCCcccCC--ceEEEEEeCCCCCHHHHHHHHHHHH
Confidence 65 678999998854211 01 2256665 6667998865544322111 1349999999999999999999999
Q ss_pred HHHHHHhh
Q 013461 432 RISAVVLR 439 (442)
Q Consensus 432 ~~~~~~~~ 439 (442)
++++++.+
T Consensus 439 ~~l~~l~~ 446 (502)
T 3hbx_A 439 KVMRELDE 446 (502)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99877643
No 193
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.77 E-value=1.4e-17 Score=168.62 Aligned_cols=313 Identities=16% Similarity=0.132 Sum_probs=185.9
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhh
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI 186 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai 186 (442)
.|+.||||++..+. |+|++++.+++.. +. ..|+..+...+|++++|+++|.++++++++|++|+..++
T Consensus 39 ~~~~ylD~~~~~~~-----~~v~~a~~~~l~~-~~------~~y~~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al 106 (467)
T 2oqx_A 39 SEDVFIDLLTDSGT-----GAVTQSMQAAMMR-GD------EAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYI 106 (467)
T ss_dssp GGGCSEECSCCSSC-----SCCCHHHHHHTTS-CC------CCSSSCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHH
T ss_pred CCCeeEecccCCCc-----HHHHHHHHHHhcc-Cc------ceeccCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHH
Confidence 46789999664432 8899998888753 21 135556677899999999999999999999999999999
Q ss_pred hhhccC-----C----CEEEeCCCchHHHHH-HHHhcCCeEEEe------c------C---CCHHHHHHHHHhhc-cccc
Q 013461 187 PCFCKK-----G----DLIVADEGVHWGIQN-GLYLSRSTVVYF------K------H---NDMDSLRNTLERVT-ADNK 240 (442)
Q Consensus 187 ~a~~~~-----g----d~Vi~~~~~h~s~~~-~~~l~g~~v~~~------~------~---~d~~~Le~~l~~~~-~~~~ 240 (442)
.++.++ | |.|+++ .+|+.... .....++.++.. + . .|+++|++.+++.. +..+
T Consensus 107 ~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~ 185 (467)
T 2oqx_A 107 PVLIKKREQEKGLDRSKMVAFS-NYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVP 185 (467)
T ss_dssp HHHHHHHHHHHCCCTTTCEEEE-SSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCC
T ss_pred HHHhccccccCCCCccceEEec-ccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCcee
Confidence 998887 8 987777 56755433 334445554321 1 1 27899999987521 1111
Q ss_pred c----------------------------cccccccccCCC---ccc-------cccCCCC--------CceeEEEEecc
Q 013461 241 R----------------------------SNSFGVLGRSGR---GLT-------EHCGVPV--------DKIDIVTAAMG 274 (442)
Q Consensus 241 ~----------------------------a~~~g~~G~~g~---g~~-------~~~~v~~--------~~~diii~S~s 274 (442)
. .|++-++-+... +.. .+.+... ...|+++.|+|
T Consensus 186 ~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~s 265 (467)
T 2oqx_A 186 YIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAK 265 (467)
T ss_dssp CEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESS
T ss_pred EEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecc
Confidence 1 122111111000 000 1112211 23577889999
Q ss_pred ccccCC-CcEEEcCHH-hHHHHH---hh---CCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccC
Q 013461 275 HALATE-GGFCTGSAR-VVDHQR---LS---SSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI 346 (442)
Q Consensus 275 K~lg~~-GG~v~g~~~-~i~~l~---~~---~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~ 346 (442)
|++|++ ||+++++++ +++.+. .. ..+....+..+...+++...+++.. ..++..++.+++.+++.+.|.++
T Consensus 266 K~~g~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~-~~~~~~~~~~~~~~~l~~~L~~~ 344 (467)
T 2oqx_A 266 KDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDG-MNLDWLAYRIAQVQYLVDGLEEI 344 (467)
T ss_dssp STTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhh-hhHHHHHHHHHHHHHHHHHHHHC
Confidence 999876 889888876 544432 21 1111111122222222211222211 11235666778899999999887
Q ss_pred CCceeecCCCCCEEEEEecC--CCCCchhhHHHHHHHHHHHHHhCCEEEeeccCccccc--------CCCCCceEEEecC
Q 013461 347 HGLSIASNPESPIVFLILEK--STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK--------CRLPVGIRLFVSA 416 (442)
Q Consensus 347 ~g~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~--------~~~~~~iRi~~~~ 416 (442)
++++. +..+.++++.+.. +... .+.....++++.++.++||.+.++..+.... ......+|++++.
T Consensus 345 -~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~ 420 (467)
T 2oqx_A 345 -GVVCQ-QAGGHAAFVDAGKLLPHIP--ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPR 420 (467)
T ss_dssp -TCCEE-EECSSCEEEEHHHHSTTSC--GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCT
T ss_pred -CCeee-cCCceEEEEechhhcccCC--cccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecC
Confidence 77766 5567778887632 1000 0100134567765366799998743210000 0001459999998
Q ss_pred C-CCHHHHHHHHHHHHHHHHHH
Q 013461 417 A-HSEADLVKACESLKRISAVV 437 (442)
Q Consensus 417 ~-~t~eei~~~i~~l~~~~~~~ 437 (442)
. +|++||++++++|++++++.
T Consensus 421 ~~~t~e~i~~~~~~l~~~l~~~ 442 (467)
T 2oqx_A 421 ATYTQTHMDFIIEAFKHVKENA 442 (467)
T ss_dssp TTSCHHHHHHHHHHHHHHHHSG
T ss_pred CCCCHHHHHHHHHHHHHHHhhh
Confidence 8 99999999999999988754
No 194
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.77 E-value=8.2e-17 Score=159.44 Aligned_cols=296 Identities=13% Similarity=0.156 Sum_probs=190.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhh-ccCCCEEEeCCCch
Q 013461 125 HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVH 203 (442)
Q Consensus 125 ~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~-~~~gd~Vi~~~~~h 203 (442)
+|++++++.+++++ +... + ..+...++++.+|+++|.++++++++|++++..++.++ .++||.|+++.+.|
T Consensus 11 ~~~v~~a~~~~~~~-~~~~--~-----~g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~ 82 (394)
T 1o69_A 11 GGNELKYIEEVFKS-NYIA--P-----LGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTF 82 (394)
T ss_dssp -CCHHHHHHHHHHH-TTTS--C-----TTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSC
T ss_pred CHHHHHHHHHHHHc-CCcc--C-----CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCcc
Confidence 47899999998876 2111 0 12567899999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHhcCCeEEEecCC-----CHHHHHHHHHhhcccccc---------------------cccccccccC--CCcc
Q 013461 204 WGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKR---------------------SNSFGVLGRS--GRGL 255 (442)
Q Consensus 204 ~s~~~~~~l~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~~---------------------a~~~g~~G~~--g~g~ 255 (442)
.++...+...|++++.++.+ |++++++.+++.....+. .++.-++-+. ..|.
T Consensus 83 ~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~ 162 (394)
T 1o69_A 83 IASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIEDAAEALGS 162 (394)
T ss_dssp GGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTC
T ss_pred HHHHHHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEECCCCChhhHHHHHHHHHHcCCEEEEECcCcccc
Confidence 99999999999999988753 788998888752101111 1111111110 0011
Q ss_pred ccccCC---CCCceeEEEEeccccccC-CCcEEEcC-HHhHHHHHhhCCcee-----c-------cCCCcHHHHHHHHHH
Q 013461 256 TEHCGV---PVDKIDIVTAAMGHALAT-EGGFCTGS-ARVVDHQRLSSSGYV-----F-------SASLPPYLASAAITA 318 (442)
Q Consensus 256 ~~~~~v---~~~~~diii~S~sK~lg~-~GG~v~g~-~~~i~~l~~~~~~~~-----~-------s~s~~p~~aaaa~aa 318 (442)
. ..+. ...++|+.+.|.+|+++. .+||++++ +++++.++....... + ...++++.++.++..
T Consensus 163 ~-~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~ 241 (394)
T 1o69_A 163 F-YKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQ 241 (394)
T ss_dssp E-ETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHH
T ss_pred e-eCCcccccccCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHH
Confidence 1 0011 112466666666898863 46999995 888888765422110 1 112567777776666
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCC-----CCCEEEEEecCCC------CC-----ch--hhHHHHHH
Q 013461 319 IDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP-----ESPIVFLILEKST------GS-----MK--NDLQLLED 380 (442)
Q Consensus 319 l~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~-----~~~i~~~~~~~~~------~~-----~~--~~~~~~~~ 380 (442)
++.++ +..++++++.+++.+.|.++ +++.+.. ..+++++.++... +. .. .......+
T Consensus 242 l~~l~---~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (394)
T 1o69_A 242 MEVLE---QRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISK 316 (394)
T ss_dssp HTTHH---HHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHH
Confidence 55543 46788899999999999875 5544321 1225667664210 00 00 00012345
Q ss_pred HHHHHHHhCCEEEeeccCcc-----cccC---CCC-------CceEEEecCCCCHHHHHHHHHHHHHHHH
Q 013461 381 IADWALKEDGVFVVTSKRSM-----LDKC---RLP-------VGIRLFVSAAHSEADLVKACESLKRISA 435 (442)
Q Consensus 381 i~~~~L~~~GV~v~~~~~~~-----~~~~---~~~-------~~iRi~~~~~~t~eei~~~i~~l~~~~~ 435 (442)
+.+. |.++||.++++..+. .... .+| ..+|+..+..+|++|+++++++|++++.
T Consensus 317 l~~~-L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 317 LIED-LKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 385 (394)
T ss_dssp HHHH-HHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence 6665 556799998875431 1100 011 2377777888999999999999998754
No 195
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.77 E-value=7.7e-17 Score=160.58 Aligned_cols=270 Identities=13% Similarity=0.060 Sum_probs=174.8
Q ss_pred CcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHh----cCCeEEEecCCCHHH
Q 013461 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYL----SRSTVVYFKHNDMDS 227 (442)
Q Consensus 152 ~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l----~g~~v~~~~~~d~~~ 227 (442)
..+...+|++++|+++|.++++++++|++|+..++.+++++||.|++..+.|.++...+.. .|.++++++.+|+++
T Consensus 79 ~~p~~~~l~~~la~~~g~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~ 158 (414)
T 3ndn_A 79 GNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQ 158 (414)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHH
T ss_pred CChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHH
Confidence 4578899999999999999999999999999999999999999999999999987776644 899999999999999
Q ss_pred HHHHHHhhcccccc---------------------cccccccccCCCccccccCCCCCceeEEEEeccccccCC----Cc
Q 013461 228 LRNTLERVTADNKR---------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATE----GG 282 (442)
Q Consensus 228 Le~~l~~~~~~~~~---------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~----GG 282 (442)
+++.+++.+..... .|++-++-+.-.+..........++|+++.|++|++|.. ||
T Consensus 159 l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G 238 (414)
T 3ndn_A 159 WERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGG 238 (414)
T ss_dssp HHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCCCE
T ss_pred HHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCceEE
Confidence 99887653221100 222222211111100001111134689999999999763 59
Q ss_pred EEEcCHHhHH-HHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCC------
Q 013461 283 FCTGSARVVD-HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP------ 355 (442)
Q Consensus 283 ~v~g~~~~i~-~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~------ 355 (442)
+++++++.+. .++... ..++..++|..++.+...++.+ ....++..++.+++.+.|.+.|++.....+
T Consensus 239 ~vv~~~~~~~~~l~~~~--~~~g~~~~~~~a~~~~~~l~~l---~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p 313 (414)
T 3ndn_A 239 AILGDREYIDGPVQKLM--RHTGPAMSAFNAWVLLKGLETL---AIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHP 313 (414)
T ss_dssp EEEECHHHHTTHHHHHH--HHHCCCCCHHHHHHHHHHGGGH---HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTST
T ss_pred EEEECHHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCc
Confidence 9999988776 444221 1234456788777665555544 346677788888888888877665322111
Q ss_pred -----------CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCccc-------c-----------cCCC
Q 013461 356 -----------ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML-------D-----------KCRL 406 (442)
Q Consensus 356 -----------~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~-------~-----------~~~~ 406 (442)
.+.++++.++... ..+.....++.+. |+..++.++.+...+. . .+..
T Consensus 314 ~~~~~~~~~~g~G~~l~~~l~~~~---~~~~~~~~~~~~~-l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~ 389 (414)
T 3ndn_A 314 QYDLAKRQMSGGGTVVTFALDCPE---DVAKQRAFEVLDK-MRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLG 389 (414)
T ss_dssp THHHHHHHCSSCCSEEEEEECSCG---GGHHHHHHHHHHH-CSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCC
T ss_pred CHHHHHHhCCCCceEEEEEEcCCc---cccHHHHHHHHHh-CccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCC
Confidence 3678999884310 0002234466664 5555666655443211 0 1112
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 407 PVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 407 ~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
+..||||++. |+.+.+++.|++++
T Consensus 390 ~~~iRlsvG~----e~~~dli~dl~~al 413 (414)
T 3ndn_A 390 DGVVRISVGL----EDTDDLIADIDRAL 413 (414)
T ss_dssp TTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred CCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 3459999986 55556666666554
No 196
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.77 E-value=3.9e-17 Score=163.28 Aligned_cols=266 Identities=16% Similarity=0.089 Sum_probs=173.1
Q ss_pred CcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHH----HHHhcCCeEEEecCCCHHH
Q 013461 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDS 227 (442)
Q Consensus 152 ~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~----~~~l~g~~v~~~~~~d~~~ 227 (442)
..+...+||+++|+++|.+.++++++|++|+..++.+++++||.|+++++.|+++.. .+...|.+++.++.+|+++
T Consensus 80 ~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~ 159 (430)
T 3ri6_A 80 SNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLA 159 (430)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHH
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHH
Confidence 357789999999999999999999999999999999999999999999999998877 5667899999999999999
Q ss_pred HHHHHHhhcccccc---------------------cccccccccCCCccccccCCCCCceeEEEEeccccccC----CCc
Q 013461 228 LRNTLERVTADNKR---------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT----EGG 282 (442)
Q Consensus 228 Le~~l~~~~~~~~~---------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~----~GG 282 (442)
+++.++..+..... .|+.-++-+.-.+..-.+.....++|+++.|++|++|. .||
T Consensus 160 l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG 239 (430)
T 3ri6_A 160 VEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGG 239 (430)
T ss_dssp HHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCE
T ss_pred HHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEE
Confidence 99887653321100 22222221111111001111123469999999999975 468
Q ss_pred EEE--cCHHh------------------HHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHh
Q 013461 283 FCT--GSARV------------------VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG 342 (442)
Q Consensus 283 ~v~--g~~~~------------------i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~ 342 (442)
+++ ++..+ ++.++.. ....+++.++|..+..++..++.+. .++++..++.+++.+.
T Consensus 240 ~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~-~~~~~g~~~~~~~a~l~l~~l~~l~---~r~~~~~~na~~la~~ 315 (430)
T 3ri6_A 240 VLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKE-VFQNLGPSLSPHNAYLQSLGLETMA---LRIERSCQNAQELAHW 315 (430)
T ss_dssp EEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHT-HHHHHCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred EEEECChHHhhhccchhhhhhhhchhhHHHHHHHH-HHHhcCCCCCHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHH
Confidence 887 44322 2333221 1123455678888877777776653 4667778899999999
Q ss_pred hccCCCceeecCCC----------------CC-EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCccc----
Q 013461 343 LSDIHGLSIASNPE----------------SP-IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML---- 401 (442)
Q Consensus 343 L~~~~g~~~~~~~~----------------~~-i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~---- 401 (442)
|++.|+++.+..|. ++ ++++.++. .....++.+. ++..++.+..+...+.
T Consensus 316 L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~--------~~~~~~~~~~-l~~~~~~~s~G~~~sli~~p 386 (430)
T 3ri6_A 316 LLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELES--------KEASYRFMDA-LKLIRRATNIHDNKSLILSP 386 (430)
T ss_dssp HTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS--------HHHHHHHHHH-CSSSEECSCCSCSSCEEECT
T ss_pred HhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC--------HHHHHHHHHh-CCcceecCCCCCCCceeeCC
Confidence 98877765322222 45 99999842 1224456653 4444555554433221
Q ss_pred --------c------cCCCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 402 --------D------KCRLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 402 --------~------~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
+ .+..++.||||+.. |+.+.+++.|++++
T Consensus 387 ~~~~h~~~~~~~~~~~g~~~~liRlsvG~----E~~~dl~~dl~~al 429 (430)
T 3ri6_A 387 YHVIYALNSHEERLKLEISPAMMRLSVGI----EEIEDLKEDILQAL 429 (430)
T ss_dssp GGGC---------CGGGSCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHhh
Confidence 0 01123459999986 55666666666654
No 197
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.76 E-value=1.8e-16 Score=156.00 Aligned_cols=295 Identities=12% Similarity=0.091 Sum_probs=187.7
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHH-HhhhC-CCcEEEEcchHHHHHhhhhhh-ccCCCEEE
Q 013461 121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARI-AKFLG-TPDSILYSYGLSTMFSAIPCF-CKKGDLIV 197 (442)
Q Consensus 121 ~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~l-A~~~g-~e~~i~~~sG~~a~~~ai~a~-~~~gd~Vi 197 (442)
.++..|++++++.+.++. |..+ ...+...++|+++ |+++| .++++++++|++|+..++.++ +++||.|+
T Consensus 11 ~~~~~~~i~~a~~~~~~~-~~~~-------~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi 82 (377)
T 3ju7_A 11 STVPVIEYLDELKEIDAS-HIYT-------NYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGKYAL 82 (377)
T ss_dssp CCCCGGGGHHHHHHHHHH-TCCS-------SSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCCEEE
T ss_pred CCCCcHHHHHHHHHHHHc-CCcc-------cCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEE
Confidence 344568899999999876 2211 1135578999999 99999 889999999999999999988 89999999
Q ss_pred eCCCchHHHHHHHHhcCCeEEEecCC------CHHHHHHHH-Hhh--ccccccccc---------------ccc--ccc-
Q 013461 198 ADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTL-ERV--TADNKRSNS---------------FGV--LGR- 250 (442)
Q Consensus 198 ~~~~~h~s~~~~~~l~g~~v~~~~~~------d~~~Le~~l-~~~--~~~~~~a~~---------------~g~--~G~- 250 (442)
++.++|.++...+...|+++++++.+ |++++++.+ +.. ++.....|- .|+ +-+
T Consensus 83 ~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~~~~G~~~~~~~i~~la~~~~~vi~D~ 162 (377)
T 3ju7_A 83 MPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPYATFGSWMNLEEYEELEKKGVPVVVDA 162 (377)
T ss_dssp EESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCBCGGGBCCCCHHHHHHHHTTCCBEEEC
T ss_pred ECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEECCCCCccCHHHHHHHHhcCCEEEEEC
Confidence 99999999999999999999988753 788999887 333 221110111 221 111
Q ss_pred -CCCccccccCCCC--CceeEEEEec--cccccC-CCcEEEc-CHHhHHHHHhhCC-c---------eeccCCCcHHHHH
Q 013461 251 -SGRGLTEHCGVPV--DKIDIVTAAM--GHALAT-EGGFCTG-SARVVDHQRLSSS-G---------YVFSASLPPYLAS 313 (442)
Q Consensus 251 -~g~g~~~~~~v~~--~~~diii~S~--sK~lg~-~GG~v~g-~~~~i~~l~~~~~-~---------~~~s~s~~p~~aa 313 (442)
+..|.. ..+... .-.|+.+.|| +|.++. .||+++. ++++.+.++.... + ..+...++++.++
T Consensus 163 a~a~g~~-~~~~~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa 241 (377)
T 3ju7_A 163 APGFGLM-NGGMHYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAA 241 (377)
T ss_dssp TTCTTCE-ETTEETTTTCSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHH
T ss_pred CCccCCe-ECCEeccCCCCcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHH
Confidence 111110 001011 0135666665 699974 3576654 6777776654321 1 1234557888888
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCc--eeecCCC---CC-EEEEEecCCCCCchhhHHHHHHHHHHHHH
Q 013461 314 AAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGL--SIASNPE---SP-IVFLILEKSTGSMKNDLQLLEDIADWALK 387 (442)
Q Consensus 314 aa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~--~~~~~~~---~~-i~~~~~~~~~~~~~~~~~~~~~i~~~~L~ 387 (442)
.+++.++.++ ...++.+++.+++.+.|.+++++ .+..... .+ ++.+.+.... + ..++.+ .|+
T Consensus 242 ~~~~~l~~l~---~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~l~~-~L~ 309 (377)
T 3ju7_A 242 IGIATMKKWD---DKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEV-----R---NKQVIE-DLK 309 (377)
T ss_dssp HHHHHHHTHH---HHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTS-----C---HHHHHH-HHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChh-----h---HHHHHH-HHH
Confidence 8877776553 46677778888888888877543 2221111 11 3344442210 0 125665 477
Q ss_pred hCCEEEeeccCccccc---------CCCC-------CceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 388 EDGVFVVTSKRSMLDK---------CRLP-------VGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 388 ~~GV~v~~~~~~~~~~---------~~~~-------~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
++||.++...++.... ..+| ..||++++..+|++|+++++++|++++..
T Consensus 310 ~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 310 KQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp TTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred HCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 7899988765322111 1111 12999999999999999999999887653
No 198
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.76 E-value=3.3e-17 Score=163.16 Aligned_cols=268 Identities=13% Similarity=0.084 Sum_probs=176.3
Q ss_pred CcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHH----HhcCCeEEEecCCCHHH
Q 013461 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDS 227 (442)
Q Consensus 152 ~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~----~l~g~~v~~~~~~d~~~ 227 (442)
..+.+.++|+++|+++|.++++++++|++|+..++.+++++||.|+++.+.|.++...+ ...|.++.+++.+|+++
T Consensus 80 ~~p~~~~le~~lA~l~g~~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~ 159 (415)
T 2fq6_A 80 GTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGAD 159 (415)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGG
T ss_pred CCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHH
Confidence 45778999999999999999999999999999999999999999999999998877554 34688999999889999
Q ss_pred HHHHHHhhcccccc---------------------c--ccccccccCCC--ccccccCCCCCceeEEEEeccccccCC--
Q 013461 228 LRNTLERVTADNKR---------------------S--NSFGVLGRSGR--GLTEHCGVPVDKIDIVTAAMGHALATE-- 280 (442)
Q Consensus 228 Le~~l~~~~~~~~~---------------------a--~~~g~~G~~g~--g~~~~~~v~~~~~diii~S~sK~lg~~-- 280 (442)
+++.+++.++-... . |+.-++-+.-. +.. ...+ ..++|+++.|++|.+|..
T Consensus 160 le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~-~~p~-~~g~Div~~S~sK~lg~~g~ 237 (415)
T 2fq6_A 160 IVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL-FKAL-DFGIDVSIQAATKYLVGHSD 237 (415)
T ss_dssp GGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTS-SCGG-GGTCSEEEEETTTTTTCSSS
T ss_pred HHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCccccc-CCcc-ccCCeEEEEeCccccCCCCC
Confidence 98887653321100 2 33322221111 110 0011 135799999999999854
Q ss_pred --CcEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCcee--ec---
Q 013461 281 --GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSI--AS--- 353 (442)
Q Consensus 281 --GG~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~--~~--- 353 (442)
||++++++++++.++... ..+++.++|..+..+..+++.+ +..+++..++.+.+.+.|.+.+.+.- .+
T Consensus 238 ~~~G~l~~~~~~~~~l~~~~--~~~G~~~~~~~a~~~~~~l~~l---~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~ 312 (415)
T 2fq6_A 238 AMIGTAVCNARCWEQLRENA--YLMGQMVDADTAYITSRGLRTL---GVRLRQHHESSLKVAEWLAEHPQVARVNHPALP 312 (415)
T ss_dssp CCCEEEEECTTTHHHHHHHH--HHTTCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTST
T ss_pred ceEEEEEeCHHHHHHHHHHH--HhcCCCCCHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCC
Confidence 589999988888776542 1234556777766666666655 33566667777777777766543321 10
Q ss_pred ------------CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcc------------c----ccCC
Q 013461 354 ------------NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM------------L----DKCR 405 (442)
Q Consensus 354 ------------~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~------------~----~~~~ 405 (442)
...++++++.++... +.....++.+. |+..++.++.+..++ + ..+.
T Consensus 313 ~~~~~~~~~~~~~~~g~i~sf~l~g~~-----~~~~~~~~l~~-l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~ 386 (415)
T 2fq6_A 313 GSKGHEFWKRDFTGSSGLFSFVLKKKL-----NNEELANYLDN-FSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDF 386 (415)
T ss_dssp TSTTHHHHHHHCSCCCSEEEEEESSCC-----CHHHHHHHHTT-CSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCC
T ss_pred CCccHHHHHhhCCCCceEEEEEECCCC-----CHHHHHHHHHh-CCcCeEeccCCCCceeEEecCCCccccccchhhcCC
Confidence 124678999885310 01123344442 333355554332211 0 0111
Q ss_pred CCCceEEEecCCCCHHHHHHHHHHHHH
Q 013461 406 LPVGIRLFVSAAHSEADLVKACESLKR 432 (442)
Q Consensus 406 ~~~~iRi~~~~~~t~eei~~~i~~l~~ 432 (442)
.+..||+|++...++++++.+.++|++
T Consensus 387 ~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 387 SGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp CSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 134699999999999999999988874
No 199
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.76 E-value=1.4e-16 Score=158.66 Aligned_cols=262 Identities=15% Similarity=0.146 Sum_probs=171.8
Q ss_pred CcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHH----HhcCCeEEEecCCCHHH
Q 013461 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDS 227 (442)
Q Consensus 152 ~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~----~l~g~~v~~~~~~d~~~ 227 (442)
..+.+.++++++|+++|.++++++++|++|+..++.+++++||.|+++.+.|.++...+ +..|.+++.++.+ +++
T Consensus 54 ~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~ 132 (412)
T 2cb1_A 54 KDPTAKALEERLKALEGALEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE-PEA 132 (412)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS-HHH
T ss_pred CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-HHH
Confidence 34778999999999999999999999999999999999999999999999998877654 4478889888764 888
Q ss_pred HHHHHHhhcccccc---------------------cccccccccC--CCccccccCCCCCceeEEEEeccccccCC----
Q 013461 228 LRNTLERVTADNKR---------------------SNSFGVLGRS--GRGLTEHCGVPVDKIDIVTAAMGHALATE---- 280 (442)
Q Consensus 228 Le~~l~~~~~~~~~---------------------a~~~g~~G~~--g~g~~~~~~v~~~~~diii~S~sK~lg~~---- 280 (442)
|++.+++.+..... .|+.-++-+. +.+....... ..+.|+++.|++|.++.+
T Consensus 133 l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~-~~~~di~~~S~~K~~~~~~~~~ 211 (412)
T 2cb1_A 133 VREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPL-AWGAHVVVESLTKWASGHGSVL 211 (412)
T ss_dssp HHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGG-GGTCSEEEEETTTTTTCSSCCC
T ss_pred HHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCcc-ccCCeEEEECCcccccCCCCcE
Confidence 88777543221100 1221111110 0010000001 135799999999999753
Q ss_pred CcEEEcCH---------------------------HhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHH
Q 013461 281 GGFCTGSA---------------------------RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLK 333 (442)
Q Consensus 281 GG~v~g~~---------------------------~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~ 333 (442)
||+++.++ ++.+.++.... ..++..++|..++.+...++.+ +...++.+
T Consensus 212 G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~-~~~g~~~~~~~a~~~~~~l~~l---~~~~~~~~ 287 (412)
T 2cb1_A 212 GGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGL-SLCGMALSPFNAYLLFQGLETV---ALRVARMS 287 (412)
T ss_dssp CEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHT-TTTCCCCCHHHHHHHHHHGGGH---HHHHHHHH
T ss_pred EEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHH-HhcCCCCChHHhHHHHcCCchH---HHHHHHHH
Confidence 45555552 34444443210 1123356788777766666554 34566677
Q ss_pred HHHHHHHHhhccCCCceee-cC----------------CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeec
Q 013461 334 KNTAILRTGLSDIHGLSIA-SN----------------PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTS 396 (442)
Q Consensus 334 ~~~~~l~~~L~~~~g~~~~-~~----------------~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~ 396 (442)
++.+++.+.|.+.+++... .+ ..++++.+.+ .+ .+ ++. +.+++.||++ .+
T Consensus 288 ~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~-----~~-----~~~-~~l~~~~i~~-~~ 354 (412)
T 2cb1_A 288 ETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-GD-----LE-----RAS-RFLGAIRLLK-AA 354 (412)
T ss_dssp HHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-SS-----HH-----HHH-HHHHHCSSEE-CS
T ss_pred HHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-CC-----HH-----HHH-HHHHhCCeee-ec
Confidence 8899999999887777633 11 2466888887 31 11 233 3566679998 65
Q ss_pred c---------Cccccc------------CCCCCceEEEecCCCCHHHHHHHHHHHHH
Q 013461 397 K---------RSMLDK------------CRLPVGIRLFVSAAHSEADLVKACESLKR 432 (442)
Q Consensus 397 ~---------~~~~~~------------~~~~~~iRi~~~~~~t~eei~~~i~~l~~ 432 (442)
+ +|.... +..+..||+|++..+|+++|+.+.++|++
T Consensus 355 s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 355 NLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp CCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred ccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 2 221110 00135699999999999999999999864
No 200
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.75 E-value=6.7e-17 Score=169.37 Aligned_cols=272 Identities=15% Similarity=0.148 Sum_probs=179.3
Q ss_pred CcHHHHHHHHHHHhhhCCCcEEEEcchH-HHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecCC-------
Q 013461 152 TIDVHLDCEARIAKFLGTPDSILYSYGL-STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------- 223 (442)
Q Consensus 152 ~~~~~~~le~~lA~~~g~e~~i~~~sG~-~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~------- 223 (442)
....+.++|+.+|+++|.++++++++|+ .||..++.+++++||.|++++++|.++..++.++|+++++++..
T Consensus 193 ~~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~~gi~ 272 (715)
T 3n75_A 193 HSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGIL 272 (715)
T ss_dssp TBTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBCTTCCB
T ss_pred CcHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEeccccccccc
Confidence 3456789999999999999999999995 89999999999999999999999999999999999999988631
Q ss_pred --------CHHHHHHHHHhhcccc----cc-----------------------------cccccc-cccCCCccccccCC
Q 013461 224 --------DMDSLRNTLERVTADN----KR-----------------------------SNSFGV-LGRSGRGLTEHCGV 261 (442)
Q Consensus 224 --------d~~~Le~~l~~~~~~~----~~-----------------------------a~~~g~-~G~~g~g~~~~~~v 261 (442)
|++++++.+++.+... .. +|+.++ +++.+.+ ...+
T Consensus 273 ~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~pn~~G~v~dl~~I~ela~~~~livDEAH~~~~~f~~~~~~---~~al 349 (715)
T 3n75_A 273 GGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKSIHFDSAWVPYTNFSPIYEG---KCGM 349 (715)
T ss_dssp CCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESSCTTSEEECHHHHHHHCCCSEEEEECTTCTTGGGSGGGTT---SSTT
T ss_pred cCcccccCCHHHHHHHHhhCcCccCceEEEEECCCCCCccCCHHHHHHHhCcCcEEEccccccccccCCcccc---cccc
Confidence 7899999998643211 00 222221 1111111 1112
Q ss_pred CC-Ccee---EEEEeccccccC--CCcEEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhc--ChHHHHHHH
Q 013461 262 PV-DKID---IVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE--NPDLITKLK 333 (442)
Q Consensus 262 ~~-~~~d---iii~S~sK~lg~--~GG~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~--~~~~~~~l~ 333 (442)
.. .+.| ++++|+||++++ .||++.++.++............+|+++++..+++..+++++++. .+++++++.
T Consensus 350 ~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~ 429 (715)
T 3n75_A 350 SGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSI 429 (715)
T ss_dssp SSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred ccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 11 1134 449999999986 478887765532222222234456778888888888889988863 467889999
Q ss_pred HHHHHHHHhhccCCC------ceeecCCC----------------------------CCE-EEEEecCC--CCCchhhHH
Q 013461 334 KNTAILRTGLSDIHG------LSIASNPE----------------------------SPI-VFLILEKS--TGSMKNDLQ 376 (442)
Q Consensus 334 ~~~~~l~~~L~~~~g------~~~~~~~~----------------------------~~i-~~~~~~~~--~~~~~~~~~ 376 (442)
++.+++++.|+++++ +++..+.. -|. +.+..+.- .|.......
T Consensus 430 ~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi 509 (715)
T 3n75_A 430 ERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGI 509 (715)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCC
T ss_pred HHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCCCCCCCccccCCC
Confidence 999999999987642 33332110 011 11111110 010000000
Q ss_pred HHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 377 LLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 377 ~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
...++. +.|+++||.+-.... ..+-+.++...|++++++++++|.++-+.
T Consensus 510 ~g~~~~-~~L~~~~I~~E~~d~---------~~vl~l~s~g~~~~~~~~L~~aL~~~~~~ 559 (715)
T 3n75_A 510 PASIVA-KYLDEHGIVVEKTGP---------YNLLFLFSIGIDKTKALSLLRALTDFKRA 559 (715)
T ss_dssp CHHHHH-HHHHHTTCCCSEEET---------TEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHH-HHHHHCCCEEEecCC---------CcEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 012344 457777997765433 33788888889999999999999887543
No 201
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.75 E-value=3.1e-17 Score=161.43 Aligned_cols=300 Identities=15% Similarity=0.134 Sum_probs=178.7
Q ss_pred Ce-eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCC---CcEEEEcchHHHHH
Q 013461 108 GK-EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT---PDSILYSYGLSTMF 183 (442)
Q Consensus 108 G~-~~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~---e~~i~~~sG~~a~~ 183 (442)
|+ +++|++.... ....+|++++++. .|+ + ....+.++++.+++++|. ++++++++|++++.
T Consensus 26 g~~~v~~~~~~~~-~~~~~~~v~~a~~----~~~----~------~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~ 90 (374)
T 2aeu_A 26 GRDALYDLSGLSG-GFLIDEKDKALLN----TYI----G------SSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAIL 90 (374)
T ss_dssp CGGGCEECSSCCC-CCCCCHHHHHHHT----STT----H------HHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred CccceeeecccCC-CCCCCHHHHHHHH----Hhc----C------chHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHH
Confidence 55 6778765431 2234577777764 221 1 134557888888899998 78899999999999
Q ss_pred hhhhhhccCCCEEEeCCCc---hHHHHHHHHhcCCeEEEecCCCHHHHHHHHHhhccc-ccc------------------
Q 013461 184 SAIPCFCKKGDLIVADEGV---HWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTAD-NKR------------------ 241 (442)
Q Consensus 184 ~ai~a~~~~gd~Vi~~~~~---h~s~~~~~~l~g~~v~~~~~~d~~~Le~~l~~~~~~-~~~------------------ 241 (442)
.++.++ +||.|+++.+. |.+.+..++..|++++.+ +|++++++. ...+.- ...
T Consensus 91 ~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v--~d~~~l~~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~ 165 (374)
T 2aeu_A 91 ATILAL--KPKKVIHYLPELPGHPSIERSCKIVNAKYFES--DKVGEILNK-IDKDTLVIITGSTMDLKVIELENFKKVI 165 (374)
T ss_dssp HHHHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE--SCHHHHHTT-CCTTEEEEEECBCTTSCBCCHHHHHHHH
T ss_pred HHHHhC--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe--CCHHHHHhc-CCCccEEEEEccCCCCCCCCcccHHHHH
Confidence 999988 99999998884 444455777889988888 688888766 321111 100
Q ss_pred ----cccccccccCCCccc---cccC--CCCCceeEEEEecccccc-CCCcEEEcCHHhHHHHHhhCCceeccCCCcHHH
Q 013461 242 ----SNSFGVLGRSGRGLT---EHCG--VPVDKIDIVTAAMGHALA-TEGGFCTGSARVVDHQRLSSSGYVFSASLPPYL 311 (442)
Q Consensus 242 ----a~~~g~~G~~g~g~~---~~~~--v~~~~~diii~S~sK~lg-~~GG~v~g~~~~i~~l~~~~~~~~~s~s~~p~~ 311 (442)
.|+.-++-+...+.. .... ....+.|++++|+||+++ ..+||+++++++++.++... ..++++.+++.
T Consensus 166 ~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~~G~~~~~~~~~~~l~~~~--~~~~~~~~~~~ 243 (374)
T 2aeu_A 166 NTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEG--TKFGLEAQPPL 243 (374)
T ss_dssp HHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHH--HTTTCBCCHHH
T ss_pred HHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcceEEEEECHHHHHHHHHhh--ccccCCCCHHH
Confidence 111111111111110 0000 000135899999999995 56799999999999887543 22344567888
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHH--------HHHHHhhccC---CCceeecCCCCCEEEEEecCCCCCchhhHHHHHH
Q 013461 312 ASAAITAIDVLEENPDLITKLKKNT--------AILRTGLSDI---HGLSIASNPESPIVFLILEKSTGSMKNDLQLLED 380 (442)
Q Consensus 312 aaaa~aal~~l~~~~~~~~~l~~~~--------~~l~~~L~~~---~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 380 (442)
++++.++++.+.. +..++..++. +.+.+.|..+ +|+.+...+.+. +....... ...+.....+
T Consensus 244 ~~a~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~-~~~~~~~~---~~~~~~~~~~ 317 (374)
T 2aeu_A 244 LAGIYRALKNFNL--ERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGF-VIKRVYKD---DTINIKKLIE 317 (374)
T ss_dssp HHHHHHHHHHCCH--HHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEE-EEEEEESS---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceE-EEEeeccc---ccccccchHH
Confidence 8888888876532 1333333333 4444545443 245543333333 33332111 0001111223
Q ss_pred HHHHHHHhCCEEEeeccCcccccCCCCCceEEEecC-CCCHHHHHHHHHHHHHHHHHHhh
Q 013461 381 IADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA-AHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 381 i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~-~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
++..+++++||.+.++..+. . .+..+||+++. ..+++++++++++++++++++.+
T Consensus 318 ~~~~ll~~~gV~v~~g~~~~--~--~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 373 (374)
T 2aeu_A 318 IGFNLLKNYGIITITVAGMP--G--ASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAFK 373 (374)
T ss_dssp HHHHHHHHHCEECSTTSSSC--S--SCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCEEEecCCCCC--C--CCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 66566766799998865321 1 12459999974 23344589999999988877643
No 202
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.74 E-value=8.6e-17 Score=159.29 Aligned_cols=266 Identities=10% Similarity=-0.004 Sum_probs=170.5
Q ss_pred cHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHH----HHhcCCeEEEecCCCHHHH
Q 013461 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDSL 228 (442)
Q Consensus 153 ~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~----~~l~g~~v~~~~~~d~~~L 228 (442)
.+...++++++|+++|.++++++++|++|+..++. ++++||.|+++.+.|.++... ++..|.++++++.+| +++
T Consensus 54 ~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d-~~l 131 (393)
T 1n8p_A 54 NPNRENLERAVAALENAQYGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLL-NDL 131 (393)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHH-HHH
T ss_pred ChhHHHHHHHHHHHhCCCcEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCCh-HHH
Confidence 45678999999999999899999999999999999 899999999999999866553 455688999998877 788
Q ss_pred HHHHHhhcccccc---------------------cc----cccccccCCCccccccCCCCCceeEEEEeccccccCCC--
Q 013461 229 RNTLERVTADNKR---------------------SN----SFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-- 281 (442)
Q Consensus 229 e~~l~~~~~~~~~---------------------a~----~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~G-- 281 (442)
++.+++.+.-... .| +.-++-+.-.+......+...++|+++.|++|.+|..|
T Consensus 132 ~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~g~~G~r 211 (393)
T 1n8p_A 132 PQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDV 211 (393)
T ss_dssp HHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCC
T ss_pred HHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccccCCCCc
Confidence 7776542211000 23 32222111111000011111247999999999998654
Q ss_pred --cEEEc-CHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCC-ce-eecC--
Q 013461 282 --GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHG-LS-IASN-- 354 (442)
Q Consensus 282 --G~v~g-~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g-~~-~~~~-- 354 (442)
|++++ ++++++.++..... ++..++|..++++.++++.+ +..+++..++.+.+.+.|.+.+. +. +..+
T Consensus 212 igG~~~~~~~~~~~~l~~~~~~--~g~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l 286 (393)
T 1n8p_A 212 VLGVLATNNKPLYERLQFLQNA--IGAIPSPFDAWLTHRGLKTL---HLRVRQAALSANKIAEFLAADKENVVAVNYPGL 286 (393)
T ss_dssp CCEEEEESCHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTS
T ss_pred eeEEEEeCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHhccchH---HHHHHHHHHHHHHHHHHHHhCCCCceEEECCCC
Confidence 99988 48888887654221 34455677766666666543 34566667777777777766533 22 1100
Q ss_pred -------------C--C-CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcc------c-cc--------
Q 013461 355 -------------P--E-SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM------L-DK-------- 403 (442)
Q Consensus 355 -------------~--~-~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~------~-~~-------- 403 (442)
+ . ++++++.++.. ......+.+. |+..++.++.+..++ . .+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-------~~~~~~~l~~-l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~ 358 (393)
T 1n8p_A 287 KTHPNYDVVLKQHRDALGGGMISFRIKGG-------AEAASKFASS-TRLFTLAESLGGIESLLEVPAVMTHGGIPKEAR 358 (393)
T ss_dssp TTSTTHHHHHHHSGGGCCCSEEEEEESSC-------HHHHHHHHHH-CSSSEECSCCCCSSCEEECTTTTTSCSSCTTTT
T ss_pred CCCccHHHHHhhCCCCCCccEEEEEeCCc-------HHHHHHHHhh-CCcceECCCCCCCcceeeccccccccccCHHHH
Confidence 1 3 67888888421 1123345553 444455554432111 0 01
Q ss_pred ---CCCCCceEEEecCCCCHHHHHHHHHHHHHH
Q 013461 404 ---CRLPVGIRLFVSAAHSEADLVKACESLKRI 433 (442)
Q Consensus 404 ---~~~~~~iRi~~~~~~t~eei~~~i~~l~~~ 433 (442)
+..+..||+|++...|+++++.+.++|+++
T Consensus 359 ~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 359 EASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp TTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 111245999999999999999999998865
No 203
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.74 E-value=1.1e-16 Score=155.78 Aligned_cols=306 Identities=18% Similarity=0.178 Sum_probs=191.2
Q ss_pred eEEEe-ecCCCCCCCCChHHHHHHHHHHHh-cCCCCCccCccccCcHHHHHHHH----HHHhhhCCCcE-----EEEcch
Q 013461 110 EVVNF-ASANYLGLIGHEKLLESCTSALEK-YGVGSCGPRGFYGTIDVHLDCEA----RIAKFLGTPDS-----ILYSYG 178 (442)
Q Consensus 110 ~~id~-~s~~~l~~~~~p~v~ea~~~~l~~-~g~~~~~~~~~~g~~~~~~~le~----~lA~~~g~e~~-----i~~~sG 178 (442)
+-|+| +|-||. +|.|.++.-..+.+ |..|+.|-| +||..+..+++|. +..++||.+.+ +---||
T Consensus 55 ~~ieLIASEN~~----S~aV~~a~gS~ltnKYaEGyPg~R-yYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SG 129 (490)
T 3ou5_A 55 RGLELIASENFC----SRAALEALGSCLNNKYSEGYPGKR-YYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSG 129 (490)
T ss_dssp HSEECCTTCCCC----CHHHHHHHTSGGGTCCCCC-----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSH
T ss_pred cCceEecCCCcC----CHHHHHHhcCcccccccCCCCCcc-ccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCH
Confidence 46777 888884 68999998888765 888888777 4555555544443 45578898864 666799
Q ss_pred HHHHHhhhhhhccCCCEEEeCCCchHHHH-HH-------HHhcCC--eEEEecC------CCHHHHHHHHHhhcccccc-
Q 013461 179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQ-NG-------LYLSRS--TVVYFKH------NDMDSLRNTLERVTADNKR- 241 (442)
Q Consensus 179 ~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~-~~-------~~l~g~--~v~~~~~------~d~~~Le~~l~~~~~~~~~- 241 (442)
+.||..+..++++|||.|+.-+..|+.-. .| +..++- +.+.|+. -|.+.++++.++..++...
T Consensus 130 s~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~ 209 (490)
T 3ou5_A 130 SPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIA 209 (490)
T ss_dssp HHHHHHHHHHHCC-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEE
Confidence 99999999999999999998777665532 12 122222 2222321 2889999998887775432
Q ss_pred -----------------------------cccccccccCCCccccccCCCCCceeEEEEeccccc-cCCCcEEEcCH---
Q 013461 242 -----------------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSA--- 288 (442)
Q Consensus 242 -----------------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~l-g~~GG~v~g~~--- 288 (442)
+|-.|.+. .|. +.-+.+..|++++|.+|+| |..||++..++
T Consensus 210 G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA---~g~---~psP~~~ADvVTtTTHKTLrGPrGG~Il~~~~~~ 283 (490)
T 3ou5_A 210 GTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVA---AKV---IPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVK 283 (490)
T ss_dssp CCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHH---TTS---SCCGGGTCSEEEEESSSTTCSCSCEEEEEECSEE
T ss_pred CCccCccccCHHHHHHHHhhcccEEEechhhhhhhhc---ccc---cCCccccceEEeccccccccCCCceEEEeccccc
Confidence 44444331 011 1111234699999999999 77899998765
Q ss_pred ------------HhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHhhccCCCceeec-C
Q 013461 289 ------------RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIAS-N 354 (442)
Q Consensus 289 ------------~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~-~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~-~ 354 (442)
++.+.+...-.+...++...-..++-|.+..+.+. +..+..+++.+|.+.|.+.|.+. |+++.+ .
T Consensus 284 ~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-G~~vvsGg 362 (490)
T 3ou5_A 284 AVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGG 362 (490)
T ss_dssp EECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGS
T ss_pred cccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC
Confidence 45555554444444444444444554444444443 34678889999999999999986 998864 4
Q ss_pred CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecC----CCCHHHHHHHHHHH
Q 013461 355 PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA----AHSEADLVKACESL 430 (442)
Q Consensus 355 ~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~----~~t~eei~~~i~~l 430 (442)
.+++++.+.+.+.. .+ .+-+++.|++.||.+....-|.......|++|||..+. ++.++|++++.+.|
T Consensus 363 TdnHlvLvDl~~~g----~t----G~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I 434 (490)
T 3ou5_A 363 TDNHLVLVDLRPKG----LD----GARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFI 434 (490)
T ss_dssp CSSSEEEEECGGGT----CC----HHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHH
T ss_pred CCceEEEEeccccC----CC----HHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHH
Confidence 57888888875321 11 13355678889999886554432222236789998775 67899999999999
Q ss_pred HHHHH
Q 013461 431 KRISA 435 (442)
Q Consensus 431 ~~~~~ 435 (442)
.+++.
T Consensus 435 ~~~l~ 439 (490)
T 3ou5_A 435 DEGVN 439 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88774
No 204
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.74 E-value=8.1e-16 Score=156.32 Aligned_cols=271 Identities=13% Similarity=0.149 Sum_probs=172.8
Q ss_pred cCcHHHHHHHHHHHhhhCCC------------cEEEEcchHHHHHhhhhhhcc-------------------CCCEEEeC
Q 013461 151 GTIDVHLDCEARIAKFLGTP------------DSILYSYGLSTMFSAIPCFCK-------------------KGDLIVAD 199 (442)
Q Consensus 151 g~~~~~~~le~~lA~~~g~e------------~~i~~~sG~~a~~~ai~a~~~-------------------~gd~Vi~~ 199 (442)
+..++..++.+.+++++|.+ ..+++++|+++|..++.+... ++++|+++
T Consensus 115 ~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s 194 (481)
T 4e1o_A 115 ACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYAS 194 (481)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEc
Confidence 33445555555667777865 358889999999888866532 57899999
Q ss_pred CCchHHHHHHHHhcCCeEEEecCC-----CHHHHHHHHHhhcccc--cc-------------------------cccccc
Q 013461 200 EGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADN--KR-------------------------SNSFGV 247 (442)
Q Consensus 200 ~~~h~s~~~~~~l~g~~v~~~~~~-----d~~~Le~~l~~~~~~~--~~-------------------------a~~~g~ 247 (442)
...|.++.+++.+.|.+++.++.+ |+++|++.+++..... .. .|++.+
T Consensus 195 ~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~l 274 (481)
T 4e1o_A 195 DQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWL 274 (481)
T ss_dssp TTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEE
T ss_pred CcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeE
Confidence 999999999999999999999864 8999999997653210 00 122111
Q ss_pred c--ccCCCcc--ccc-----cCCCCCceeEEEEeccccccCC---CcEEEcCHHhHHHHHhhCCceecc-----------
Q 013461 248 L--GRSGRGL--TEH-----CGVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLSSSGYVFS----------- 304 (442)
Q Consensus 248 ~--G~~g~g~--~~~-----~~v~~~~~diii~S~sK~lg~~---GG~v~g~~~~i~~l~~~~~~~~~s----------- 304 (442)
+ +..|.+. ... .|+ ...|.++.+.+|.++.+ |++++.++..+.........|.+.
T Consensus 275 hvDaA~g~~~~~~~~~~~~~~gi--~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~ 352 (481)
T 4e1o_A 275 HIDAAYAGTAFLCPEFRGFLKGI--EYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMH 352 (481)
T ss_dssp EEECTTGGGGGGSGGGGGGGTTG--GGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGG
T ss_pred EeehhhHHHHHhChhhHHHhcCc--ccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCccc
Confidence 1 1111111 111 122 24589999999999753 344555555443221111222221
Q ss_pred ----CC--CcHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHH
Q 013461 305 ----AS--LPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQ 376 (442)
Q Consensus 305 ----~s--~~p~~aaaa~aal~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 376 (442)
.+ ...+.+. ++++.+. ...++.++..++++++.+.|++++|+++..++..+++.+.+... ..
T Consensus 353 ~~~~~~r~~~~l~~~---~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-------~~ 422 (481)
T 4e1o_A 353 WQIPLSRRFRSVKLW---FVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGP-------NS 422 (481)
T ss_dssp GSSSSCCCCTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSC-------HH
T ss_pred ccccCCCCccHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCc-------hH
Confidence 11 1233333 3343332 23567888999999999999998899987777888999887431 12
Q ss_pred HHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCC-CCHHHHHHHHHHHHHHHHHHhh
Q 013461 377 LLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAA-HSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 377 ~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~-~t~eei~~~i~~l~~~~~~~~~ 439 (442)
...++.+++.++..+++.+..... ...+|+++... .|++||++++++|+++.+++++
T Consensus 423 ~~~~l~~~L~~~g~~~~~~~~~~g------~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~~ 480 (481)
T 4e1o_A 423 LTENVLKEIAKAGRLFLIPATIQD------KLIIRFTVTSQFTTRDDILRDWNLIRDAATLILS 480 (481)
T ss_dssp HHHHHHHHHHHHCSSBCEEEEETT------EEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCeEEEEeeEECC------EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 345677776665335555432211 13499997754 4899999999999999888764
No 205
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.74 E-value=2.4e-16 Score=160.91 Aligned_cols=307 Identities=11% Similarity=0.090 Sum_probs=182.6
Q ss_pred EEeecCCCCCCCCC----hHHHHHHHHHHHhcCCCCCccCccccCcHHHHHH----HHHHHhhhCC---CcEEEEcchHH
Q 013461 112 VNFASANYLGLIGH----EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDC----EARIAKFLGT---PDSILYSYGLS 180 (442)
Q Consensus 112 id~~s~~~l~~~~~----p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~l----e~~lA~~~g~---e~~i~~~sG~~ 180 (442)
+++.+..|+++... |.+.+++.....+ . ....++..+...++ .+.+++++|. +..+++++|++
T Consensus 96 ~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~n----~--~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~ 169 (497)
T 2qma_A 96 IFTQHPDCIAHLHTPPLMPAVAAEAMIAALN----Q--SMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQ 169 (497)
T ss_dssp CCTTSTTBCSSSCCCCBHHHHHHHHHHHHHC----C--CTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHH
T ss_pred CCCCCCCeeEeCCCCCcHHHHHHHHHHHhhc----c--cccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchH
Confidence 45666777777654 3444444433322 1 12234444444444 5559999986 46788889999
Q ss_pred HHHhhhhhh----c---------cC------CC-EEEeCCCchHHHHHHHHhcCC---eEEEecCC-----CHHHHHHHH
Q 013461 181 TMFSAIPCF----C---------KK------GD-LIVADEGVHWGIQNGLYLSRS---TVVYFKHN-----DMDSLRNTL 232 (442)
Q Consensus 181 a~~~ai~a~----~---------~~------gd-~Vi~~~~~h~s~~~~~~l~g~---~v~~~~~~-----d~~~Le~~l 232 (442)
|+..++.++ . ++ || .|+++...|.++.+++...|. +++.++.+ |+++|++.+
T Consensus 170 a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i 249 (497)
T 2qma_A 170 SNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVI 249 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHH
Confidence 999888763 2 12 46 899999999999999988865 78888875 789999998
Q ss_pred Hhhccc-cc--c------------------------ccccccc--ccCCCccc--c----ccCCCCCceeEEEEeccccc
Q 013461 233 ERVTAD-NK--R------------------------SNSFGVL--GRSGRGLT--E----HCGVPVDKIDIVTAAMGHAL 277 (442)
Q Consensus 233 ~~~~~~-~~--~------------------------a~~~g~~--G~~g~g~~--~----~~~v~~~~~diii~S~sK~l 277 (442)
++.... .+ . .|++-++ +..+.+.. . ..++ ..+|+++.|++|++
T Consensus 250 ~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi--~~~D~i~~s~hK~l 327 (497)
T 2qma_A 250 AQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGV--ERAHSISVDFHKLF 327 (497)
T ss_dssp HHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTG--GGCSEEEEETTTTT
T ss_pred HHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCc--ccCCEEEEcchhcc
Confidence 764110 00 0 1111111 01111111 1 1122 35689999999998
Q ss_pred cCCC--cEEEc-CHHhHHHHHhhCCceeccCC---CcHHH----------HHHHHHHHHHHh--cChHHHHHHHHHHHHH
Q 013461 278 ATEG--GFCTG-SARVVDHQRLSSSGYVFSAS---LPPYL----------ASAAITAIDVLE--ENPDLITKLKKNTAIL 339 (442)
Q Consensus 278 g~~G--G~v~g-~~~~i~~l~~~~~~~~~s~s---~~p~~----------aaaa~aal~~l~--~~~~~~~~l~~~~~~l 339 (442)
+.+. |+++. ++..++.+.. ...|.++.. .++.. +.+..++++.+. ...++.++..++++++
T Consensus 328 ~~p~~~G~l~~~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l 406 (497)
T 2qma_A 328 YQTISCGALLVNDKSNFKFLLH-HADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEV 406 (497)
T ss_dssp CCCSSCEEEEESCGGGGGGGCC---------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEEeCHHHHHHhcC-CchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 6532 66655 4544444322 122332211 11111 112223455442 2245778889999999
Q ss_pred HHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEe-cCCC
Q 013461 340 RTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAH 418 (442)
Q Consensus 340 ~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~-~~~~ 418 (442)
.+.|++++++++..++..+++.+.+..... .......++.+.+++ .|+.+.+..... . ...+|+++ +..+
T Consensus 407 ~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~l~~~l~~~l~~-~G~~~~~~~~~~---g--~~~lRis~~~~~~ 477 (497)
T 2qma_A 407 ADMIRTNDQFELLAEPSLSTVLFRATHETA---DLDELNKALRLEALT-RGIAVLGETIVD---G--KTALKFTILNPCL 477 (497)
T ss_dssp HHHHHTCTTEEECSCCSSSEEEEEECCSSS---CHHHHHHHHHHHHHH-HTSCBCEEEEET---T--EEEEEEECCCTTC
T ss_pred HHHHhhCCCeEEEcCCCceEEEEEEcCCcc---CHHHHHHHHHHHHHh-CCCEEEEeeEEC---C--EEEEEEEecCCCC
Confidence 999998888988666778888888753211 111223456665554 488775432211 0 13499998 8889
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 013461 419 SEADLVKACESLKRISAV 436 (442)
Q Consensus 419 t~eei~~~i~~l~~~~~~ 436 (442)
|++|+++++++|++++++
T Consensus 478 t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 478 TTSDFESLLSKINMLAVE 495 (497)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999988765
No 206
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.73 E-value=1.5e-16 Score=159.25 Aligned_cols=316 Identities=14% Similarity=0.076 Sum_probs=188.7
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHh-cCCCCCccCccccCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHHH
Q 013461 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEK-YGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF 183 (442)
Q Consensus 107 ~G~~~id~~s~~~l~~~~~p~v~ea~~~~l~~-~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~ 183 (442)
+|..++|++++. ..+|++++++.+++.+ ++.....+....+..+...++++++|+++|.+ +++++++|++++.
T Consensus 17 ~~~~~Ld~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~ 92 (432)
T 3a9z_A 17 NRKVYMDYNATT----PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNN 92 (432)
T ss_dssp -CCEECBTTTCC----CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHH
T ss_pred CCcEEeeCCccC----CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHH
Confidence 455667765544 3579999999999976 22222222111234567789999999999964 6777777899999
Q ss_pred hhhhhhc--------cCCC-------------EEEeCCCchHHHHHHHH----hcCCeEEEecCC------CHHHHHHHH
Q 013461 184 SAIPCFC--------KKGD-------------LIVADEGVHWGIQNGLY----LSRSTVVYFKHN------DMDSLRNTL 232 (442)
Q Consensus 184 ~ai~a~~--------~~gd-------------~Vi~~~~~h~s~~~~~~----l~g~~v~~~~~~------d~~~Le~~l 232 (442)
.++.++. ++|| .|+++...|.++..++. ..|.+++.++.+ |+++|++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i 172 (432)
T 3a9z_A 93 LVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAV 172 (432)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTC
T ss_pred HHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhc
Confidence 9998875 5785 56666667777655543 358888888753 567777665
Q ss_pred Hhhcccccc---------------------ccc----------cccccc--CCCccccccCCCCCceeEEEEeccccccC
Q 013461 233 ERVTADNKR---------------------SNS----------FGVLGR--SGRGLTEHCGVPVDKIDIVTAAMGHALAT 279 (442)
Q Consensus 233 ~~~~~~~~~---------------------a~~----------~g~~G~--~g~g~~~~~~v~~~~~diii~S~sK~lg~ 279 (442)
++.+.-... .++ .-++-+ .+.|.. ..++...+.|+++.|++|.+|.
T Consensus 173 ~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~-~~~~~~~~~d~~~~s~~K~~g~ 251 (432)
T 3a9z_A 173 RPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR-RVDVEDLGVDFLTIVGHKFYGP 251 (432)
T ss_dssp CTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS-CCCHHHHCCSEEEEEGGGTTCC
T ss_pred cCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCc-ccChhhcCCCEEEEehhHhcCC
Confidence 432211000 222 222211 111110 1111112468999999999987
Q ss_pred CCcEEEcCHHh-HHHHHhhCC-----ceeccCCCcHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHhhccCCCceee
Q 013461 280 EGGFCTGSARV-VDHQRLSSS-----GYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIA 352 (442)
Q Consensus 280 ~GG~v~g~~~~-i~~l~~~~~-----~~~~s~s~~p~~aaaa~aal~~l~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~ 352 (442)
..||++++++. ...++.... .....++.++..++++.++++.+++ .++++++++++++++.+.|++++|+++.
T Consensus 252 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 331 (432)
T 3a9z_A 252 RIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEAEFGKRIH 331 (432)
T ss_dssp SCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEE
T ss_pred cceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCcEE
Confidence 78999998765 222211100 0011233466666666778876653 3567888999999999999875465432
Q ss_pred --cC----CCC-CEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccc----------cCCC-----CCce
Q 013461 353 --SN----PES-PIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD----------KCRL-----PVGI 410 (442)
Q Consensus 353 --~~----~~~-~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~----------~~~~-----~~~i 410 (442)
.+ ... .++.+.+..... + ..++.+. + .|+.+..+..+... .... +..+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~-l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~i 401 (432)
T 3a9z_A 332 LNSRFPGVERLPNTCNFSIQGSQL----R---GYMVLAQ-C--QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAV 401 (432)
T ss_dssp ESSCCTTCCBCTTEEEEEECSTTC----C---HHHHHHH-C--SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEE
T ss_pred EeCCCCcccCCCCEEEEEeCCCCC----c---HHHHHHH-h--cCeEEeccccccCCCCCCccHHHHhcCCCccccCceE
Confidence 22 122 367777643110 1 1134432 3 26776654322110 0011 2459
Q ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 411 RLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 411 Ri~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
||+++..+|++|+++++++|+++++++
T Consensus 402 Ris~~~~~t~eei~~~~~~l~~~~~~~ 428 (432)
T 3a9z_A 402 RLSVGRSTTRAEVDLIVQDLKQAVNQL 428 (432)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999889999999999999998765
No 207
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.73 E-value=5.6e-16 Score=157.18 Aligned_cols=270 Identities=9% Similarity=0.040 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHhhhCCC-----------cEEEEcchHHHHHhhhhhhc-------------------cCCCEEEeCCCch
Q 013461 154 DVHLDCEARIAKFLGTP-----------DSILYSYGLSTMFSAIPCFC-------------------KKGDLIVADEGVH 203 (442)
Q Consensus 154 ~~~~~le~~lA~~~g~e-----------~~i~~~sG~~a~~~ai~a~~-------------------~~gd~Vi~~~~~h 203 (442)
++..++.+.+++++|.+ ..+++++|+++|..++.+.. .++++|+++...|
T Consensus 113 ~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H 192 (475)
T 3k40_A 113 ELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAH 192 (475)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSC
T ss_pred HHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCch
Confidence 34444445567778865 46888999999988886652 1357899999999
Q ss_pred HHHHHHHHhcCCeEEEecCC----CHHHHHHHHHhhcccc--cc-------------------------ccccccc--cc
Q 013461 204 WGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADN--KR-------------------------SNSFGVL--GR 250 (442)
Q Consensus 204 ~s~~~~~~l~g~~v~~~~~~----d~~~Le~~l~~~~~~~--~~-------------------------a~~~g~~--G~ 250 (442)
.++.+++++.|.+++.++.+ |+++|++.+++..... .. .|++-++ +.
T Consensus 193 ~s~~~~~~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A 272 (475)
T 3k40_A 193 SSVERAGLLGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAA 272 (475)
T ss_dssp HHHHHHHHHHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECT
T ss_pred HHHHHHHHHcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHH
Confidence 99999999999999999874 8999999998653211 00 1221111 11
Q ss_pred CCCccc--cc-----cCCCCCceeEEEEeccccccCC-C-cE-EEcCHHhH-HHHHhhCCceec---------------c
Q 013461 251 SGRGLT--EH-----CGVPVDKIDIVTAAMGHALATE-G-GF-CTGSARVV-DHQRLSSSGYVF---------------S 304 (442)
Q Consensus 251 ~g~g~~--~~-----~~v~~~~~diii~S~sK~lg~~-G-G~-v~g~~~~i-~~l~~~~~~~~~---------------s 304 (442)
.|.+.. .. .++ ..+|.++.+.+|.++.+ | |+ ++.+++.+ +.+.. ...|.. .
T Consensus 273 ~~~~~~~~~~~~~~~~gi--~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~-~~~yl~~~~~~~~~~~~~~~~~ 349 (475)
T 3k40_A 273 YAGSAFICPEYRHLMKGI--ESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNV-DPLYLKHDMQGSAPDYRHWQIP 349 (475)
T ss_dssp TGGGGGGSGGGGGGGTTG--GGCSEEEECHHHHSSCCSSCEEEEESSGGGC----------------------------C
T ss_pred hHHHHHhCHhhHHHhcCc--ccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcC-CccccCCCcCCCCCCccccccc
Confidence 111111 11 122 24699999999998643 2 44 44555442 22211 111111 1
Q ss_pred CCCcHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHH
Q 013461 305 ASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIA 382 (442)
Q Consensus 305 ~s~~p~~aaaa~aal~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~ 382 (442)
.+. ++.+....++++.+. ...++.++..++.+++.+.|++++|+++..++..+++.+.+... .....++.
T Consensus 350 ~sr-~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~-------~~~~~~l~ 421 (475)
T 3k40_A 350 LGR-RFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGS-------NERNEALL 421 (475)
T ss_dssp CCG-GGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSC-------HHHHHHHH
T ss_pred CCC-cccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCc-------hHHHHHHH
Confidence 111 112223334454443 23567888999999999999998899998777888999887431 12345777
Q ss_pred HHHHHhCCEEEeeccCcccccCCCCCceEEEecCC-CCHHHHHHHHHHHHHHHHHHhhc
Q 013461 383 DWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAA-HSEADLVKACESLKRISAVVLRD 440 (442)
Q Consensus 383 ~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~-~t~eei~~~i~~l~~~~~~~~~~ 440 (442)
+++.++.++++.+..... ...+|+++... .|++||++++++|+++.++++++
T Consensus 422 ~~L~~~g~~~~~~~~~~g------~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~~ 474 (475)
T 3k40_A 422 KRINGRGHIHLVPAKIKD------VYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQE 474 (475)
T ss_dssp HHHHHHTSCBCEEEEETT------EEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCcEEEEeeEECC------EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 776666444554432211 13499998644 58999999999999999887653
No 208
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.73 E-value=7.7e-16 Score=152.22 Aligned_cols=258 Identities=13% Similarity=0.087 Sum_probs=166.5
Q ss_pred cHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHH----HHhcCCeEEEecCCCHHHH
Q 013461 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDSL 228 (442)
Q Consensus 153 ~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~----~~l~g~~v~~~~~~d~~~L 228 (442)
.+...++++++|+++|.++++++++|++|+..++.++.++||.|+++.+.|.++... ++..|.+++.++.+|++++
T Consensus 58 ~~~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l 137 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKV 137 (389)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCHHHH
T ss_pred ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCHHHH
Confidence 577899999999999999999999999999999999999999999999999987766 4678999999999999999
Q ss_pred HHHHHhhcccccc---------------------ccccccc-ccCC-Cccc-cccCCCCCceeEEEEeccccccCC----
Q 013461 229 RNTLERVTADNKR---------------------SNSFGVL-GRSG-RGLT-EHCGVPVDKIDIVTAAMGHALATE---- 280 (442)
Q Consensus 229 e~~l~~~~~~~~~---------------------a~~~g~~-G~~g-~g~~-~~~~v~~~~~diii~S~sK~lg~~---- 280 (442)
++.+++.+.-... .|+.-++ ...- .+.. ...+ .+.|+++.|++|++|..
T Consensus 138 ~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~---~~~di~~~S~sK~~~~~~~~~ 214 (389)
T 3acz_A 138 KAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLE---LGADIALHSVSKYINGHGDVI 214 (389)
T ss_dssp HHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGG---TTCSEEEEETTTTTTCSSCCC
T ss_pred HHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCccc---cCCeEEEECChhhccCCCCce
Confidence 8877643221100 2222111 1110 0110 1111 34699999999999754
Q ss_pred CcEEEcCH-HhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCC------------
Q 013461 281 GGFCTGSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH------------ 347 (442)
Q Consensus 281 GG~v~g~~-~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~------------ 347 (442)
||++++++ ++++.++.... .++.+.+|..+++++++++.+. ...++..++.+.+.+.|++.+
T Consensus 215 ~G~v~~~~~~~~~~l~~~~~--~~g~~~~~~~~~~~~~~l~~l~---~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~ 289 (389)
T 3acz_A 215 GGVSSAKTAEDIATIKFYRK--DAGSLMAPMDAFLCARGMKTLP---IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLES 289 (389)
T ss_dssp CEEEEESSHHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTT
T ss_pred eEEEEECcHHHHHHHHHHHH--hcCCCCCHHHHHHHHcCccHHH---HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCC
Confidence 68999998 88887765431 1345567887777777765442 344555556666666555432
Q ss_pred --Cceeec---CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeec---------cCccccc----------
Q 013461 348 --GLSIAS---NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTS---------KRSMLDK---------- 403 (442)
Q Consensus 348 --g~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~---------~~~~~~~---------- 403 (442)
++.+.. ...++++.+.++. . .+ +.+.+++.|+.+... ..+....
T Consensus 290 ~~~~~~~~~~~~g~g~~~~~~l~~------~-----~~-~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~ 357 (389)
T 3acz_A 290 FPGHDIAKKQMTGYGSTFLFEMKS------F-----EA-AKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMR 357 (389)
T ss_dssp STTHHHHHHHCSSCCSEEEEEESS------H-----HH-HHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHH
T ss_pred CccHHHHHhhCCCCCeEEEEEECC------H-----HH-HHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHH
Confidence 222211 1236788888732 1 12 334566678877662 2221100
Q ss_pred --CCCCCceEEEecCCCCHHHHHHHHHHH
Q 013461 404 --CRLPVGIRLFVSAAHSEADLVKACESL 430 (442)
Q Consensus 404 --~~~~~~iRi~~~~~~t~eei~~~i~~l 430 (442)
+..+..||++++...+++.++.+.++|
T Consensus 358 ~~g~~~~~iRlsvg~~~~~~li~~l~~al 386 (389)
T 3acz_A 358 KQGITPELVRISVGIENVDDIIADLKQAL 386 (389)
T ss_dssp HHTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred hcCCCcCeEEEEeccCCHHHHHHHHHHHH
Confidence 111346999999876555555555544
No 209
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.73 E-value=5.5e-17 Score=171.30 Aligned_cols=276 Identities=16% Similarity=0.110 Sum_probs=175.2
Q ss_pred ccCcHHHHHHHHHHHhhhCCCcEEEEcchH-HHHHhhhhhhccCCCEEEeCCCchHHHHHH-HHhcCCeEEEecC-----
Q 013461 150 YGTIDVHLDCEARIAKFLGTPDSILYSYGL-STMFSAIPCFCKKGDLIVADEGVHWGIQNG-LYLSRSTVVYFKH----- 222 (442)
Q Consensus 150 ~g~~~~~~~le~~lA~~~g~e~~i~~~sG~-~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~-~~l~g~~v~~~~~----- 222 (442)
.+....+.++++.+|+++|.+.++++++|+ +++..++.+++++||.|++++++|.++..+ +.++|+++++++.
T Consensus 169 ~~~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~~~ 248 (730)
T 1c4k_A 169 LIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPY 248 (730)
T ss_dssp TTTBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTT
T ss_pred cCChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 345577899999999999999988888886 899999999999999999999999999999 8999999887652
Q ss_pred -----CCHHHH-----HHHHHhh------cccc-cc---------------------------------cccccc-cccC
Q 013461 223 -----NDMDSL-----RNTLERV------TADN-KR---------------------------------SNSFGV-LGRS 251 (442)
Q Consensus 223 -----~d~~~L-----e~~l~~~------~~~~-~~---------------------------------a~~~g~-~G~~ 251 (442)
.|+++| ++.+++. +... +. +|+.+. ++..
T Consensus 249 ~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~ 328 (730)
T 1c4k_A 249 GFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPM 328 (730)
T ss_dssp CCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGG
T ss_pred CccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCCCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcc
Confidence 177777 7777543 1000 11 222110 1111
Q ss_pred CCccc----cccCCCCCceeEEEEeccccccCC--CcEEEcCHH-------hHH--HHHhhCCceeccCCCcHHHHHHHH
Q 013461 252 GRGLT----EHCGVPVDKIDIVTAAMGHALATE--GGFCTGSAR-------VVD--HQRLSSSGYVFSASLPPYLASAAI 316 (442)
Q Consensus 252 g~g~~----~~~~v~~~~~diii~S~sK~lg~~--GG~v~g~~~-------~i~--~l~~~~~~~~~s~s~~p~~aaaa~ 316 (442)
+.|.. +..+.+ +..++++.|+||++++. ||++..+++ .++ .+... .....++++++..+++..
T Consensus 329 ~~g~~~l~~~~~g~D-~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~-~~~~~stsp~~~~iaal~ 406 (730)
T 1c4k_A 329 MRNSSPLLIDDLGPE-DPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNS-FNLFMSTSPFYPMYAALD 406 (730)
T ss_dssp GGGGCTTSCCCCCTT-SCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHH-HHHHSCSSCCHHHHHHHH
T ss_pred cCCcCcccccccCCC-CCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHHHH-HHHhCCCCCcHHHHHHHH
Confidence 11000 011221 12349999999999743 467633222 222 11111 112334566666666666
Q ss_pred HHHHHHhc--ChHHHHHHHHHHHHHHHhhcc-CCCceeecCC-------------------------------------C
Q 013461 317 TAIDVLEE--NPDLITKLKKNTAILRTGLSD-IHGLSIASNP-------------------------------------E 356 (442)
Q Consensus 317 aal~~l~~--~~~~~~~l~~~~~~l~~~L~~-~~g~~~~~~~-------------------------------------~ 356 (442)
++++.+.. ..+.++++.++.+++++.|++ ++|+++..+. .
T Consensus 407 aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 486 (730)
T 1c4k_A 407 VNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGD 486 (730)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhccccccCC
Confidence 77777654 456788999999999999988 6788765321 1
Q ss_pred C-----CE-EEEEecC---CCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHH
Q 013461 357 S-----PI-VFLILEK---STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKAC 427 (442)
Q Consensus 357 ~-----~i-~~~~~~~---~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i 427 (442)
+ |+ +.+..+. ..+..........++.+. |+++||.+.... ..++|++++..+|++|+++++
T Consensus 487 ~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~-L~e~GI~v~~~~---------~~~ir~~~s~g~t~e~i~~Ll 556 (730)
T 1c4k_A 487 NQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANY-LRDHGIIPEKSD---------LNSILFLMTPAETPAKMNNLI 556 (730)
T ss_dssp TCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHH-HHHTTCCCSEEC---------SSEEEEECCTTCCHHHHHHHH
T ss_pred cccccCCeEEEEEeCCcccccccccccCCCHHHHHHH-HHHCCcEEEECC---------CCeEEEEeCCCCCHHHHHHHH
Confidence 1 10 2333311 000000000012355654 656699876532 245999999999999999999
Q ss_pred HHHHHHHHHH
Q 013461 428 ESLKRISAVV 437 (442)
Q Consensus 428 ~~l~~~~~~~ 437 (442)
++|+++.+..
T Consensus 557 ~aL~~i~~~~ 566 (730)
T 1c4k_A 557 TQLLQLQRLI 566 (730)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999987654
No 210
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.72 E-value=2.3e-16 Score=160.16 Aligned_cols=296 Identities=14% Similarity=0.111 Sum_probs=185.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEEE-cchHHHHHhhhhhh----ccCCC-----
Q 013461 125 HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILY-SYGLSTMFSAIPCF----CKKGD----- 194 (442)
Q Consensus 125 ~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~~-~sG~~a~~~ai~a~----~~~gd----- 194 (442)
+|++.+++.+.+..|. .+.......|..++..++++.+++++|.+..+++ ++|++++..++.++ .++||
T Consensus 79 ~p~v~~~~~~~~~~~~-~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~ 157 (474)
T 1wyu_B 79 NPKLHEEAARLFADLH-PYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRR 157 (474)
T ss_dssp CCHHHHHHHHTTSSCC-TTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCC
T ss_pred CHHHHHHHHHHHHhcC-CCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCC
Confidence 5888888876632221 1111113567778999999999999998876644 77889888766554 46887
Q ss_pred EEEeCCCchHHHHHHHHhcCCeEEEecCC-----CHHHHHHHHHhhcccccccc--ccccc-------------------
Q 013461 195 LIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRSN--SFGVL------------------- 248 (442)
Q Consensus 195 ~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~~a~--~~g~~------------------- 248 (442)
.|+++.++|+++...+...|.+++.++.+ |+++|++.+++.+......+ ..|.+
T Consensus 158 ~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~pn~~G~~~~~l~~i~~l~~~~g~~li 237 (474)
T 1wyu_B 158 VVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLY 237 (474)
T ss_dssp EEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEE
T ss_pred EEEEeCCcChhhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhhCCCceEEEEECCCCCcccCCCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999999999875 78888887754321100000 11211
Q ss_pred cc--CCCccccccCCCCCceeEEEEeccccccCC-------CcEEEcCHHhHHHHHh-----hCCceec-----------
Q 013461 249 GR--SGRGLTEHCGVPVDKIDIVTAAMGHALATE-------GGFCTGSARVVDHQRL-----SSSGYVF----------- 303 (442)
Q Consensus 249 G~--~g~g~~~~~~v~~~~~diii~S~sK~lg~~-------GG~v~g~~~~i~~l~~-----~~~~~~~----------- 303 (442)
-+ .+.+..........+.|+++.|++|+++.+ .|++++++++++.+.. .+..|.+
T Consensus 238 ~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~ 317 (474)
T 1wyu_B 238 YDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRV 317 (474)
T ss_dssp EEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCS
T ss_pred EeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCccc
Confidence 00 000000000000013689999999999743 3899999988776541 0111111
Q ss_pred -cCCCcHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHhhccCCCceeecCC-CCCEEEEEecCCCCCchhhHHHHH
Q 013461 304 -SASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNP-ESPIVFLILEKSTGSMKNDLQLLE 379 (442)
Q Consensus 304 -s~s~~p~~aaaa~aal~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~ 379 (442)
+.+.+++.++++.+.++.+. ...+..++++++++++.+.|+++ |+++.... ....+++.+. .+ .+ ..
T Consensus 318 ~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~--~~---~~---~~ 388 (474)
T 1wyu_B 318 RSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQPP--EG---FR---AL 388 (474)
T ss_dssp SSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBCS--TT---CC---HH
T ss_pred ccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEcC--CC---CC---HH
Confidence 11245666666667766432 22445788899999999999887 87763221 1111333331 11 01 23
Q ss_pred HHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHH
Q 013461 380 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 435 (442)
Q Consensus 380 ~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~ 435 (442)
++++.+++ +||.+....++.. .+..+||+++..+|++|+++++++|+++++
T Consensus 389 ~l~~~L~~-~Gi~~~~~~~~~~----~~~~lRis~~~~~t~e~id~~~~~L~~~~~ 439 (474)
T 1wyu_B 389 DLAKGLLE-LGFHPPTVYFPLI----VKEALMVEPTETEAKETLEAFAEAMGALLK 439 (474)
T ss_dssp HHHHHHHH-TTCCCCEESCSTT----STTCEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-CCccccccccccc----cCCEEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence 67776554 5998532222210 134599999998999999999999998764
No 211
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.71 E-value=7e-16 Score=153.23 Aligned_cols=263 Identities=15% Similarity=0.092 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHH----HhcCCeEEEecCCCHHHHH
Q 013461 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSLR 229 (442)
Q Consensus 154 ~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~----~l~g~~v~~~~~~d~~~Le 229 (442)
+...++++++|+++|.++.+++++|++|+..++. ++++||.|+++.+.|.++...+ +..|.+++.++.+|+++++
T Consensus 67 p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~ 145 (403)
T 3cog_A 67 PTRNCLEKAVAALDGAKYCLAFASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLE 145 (403)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHH
T ss_pred chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHHHHH
Confidence 5578999999999999899999999999999999 8999999999999998865543 4678999999998999998
Q ss_pred HHHHhhcccccc-------------------ccccc---cc-ccCCCccccccCCCCCceeEEEEeccccccCC----Cc
Q 013461 230 NTLERVTADNKR-------------------SNSFG---VL-GRSGRGLTEHCGVPVDKIDIVTAAMGHALATE----GG 282 (442)
Q Consensus 230 ~~l~~~~~~~~~-------------------a~~~g---~~-G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~----GG 282 (442)
+.+++.+.-... ++..| ++ ............+. .+.|+++.|++|.+|.. +|
T Consensus 146 ~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~~-~~~div~~S~sK~~~g~~~~~~G 224 (403)
T 3cog_A 146 AAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLA-LGADISMYSATKYMNGHSDVVMG 224 (403)
T ss_dssp HHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTTT-TTCSEEEEETTTTTTCSSCCCCE
T ss_pred HhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCccc-cCCeEEEEcChhhccCCCCCeEE
Confidence 877643221100 22223 22 11111110001121 35799999999999753 48
Q ss_pred EEEc-CHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhh--------------ccCC
Q 013461 283 FCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL--------------SDIH 347 (442)
Q Consensus 283 ~v~g-~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L--------------~~~~ 347 (442)
++++ ++++++.++.... .++...+|+.+.++.++++.+. ...++..++...+.+.| .+.+
T Consensus 225 ~v~~~~~~l~~~l~~~~~--~~g~~~~~~~~~~~~~~l~~l~---~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p 299 (403)
T 3cog_A 225 LVSVNCESLHNRLRFLQN--SLGAVPSPIDCYLCNRGLKTLH---VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHP 299 (403)
T ss_dssp EEEECCHHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTST
T ss_pred EEEECcHHHHHHHHHHHH--hcCCCCCHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCC
Confidence 9988 4788887765422 2344567887777766765442 23444444444444333 3333
Q ss_pred CceeecC---CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeec---c------Cccc-cc-----------
Q 013461 348 GLSIASN---PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTS---K------RSML-DK----------- 403 (442)
Q Consensus 348 g~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~---~------~~~~-~~----------- 403 (442)
++++..+ ..++++.+.++.. . . + +.+++++.||++... . .|.. .+
T Consensus 300 ~~~~~~~~~~~~g~~~~~~l~~~------~-~---~-~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~ 368 (403)
T 3cog_A 300 QHELVKRQCTGCTGMVTFYIKGT------L-Q---H-AEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVL 368 (403)
T ss_dssp THHHHHHHCSCCCSEEEEEESSC------H-H---H-HHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHH
T ss_pred cHHHHHhcCCCCceEEEEEecCC------H-H---H-HHHHHHhCCcceEccCCCCcceeeecccccccccCCHHHHHhc
Confidence 4443321 2477888887421 1 1 2 223455667765432 1 1110 00
Q ss_pred CCCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 404 CRLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 404 ~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
+..+..||++++..+++++|+.+.++|++++
T Consensus 369 g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~ 399 (403)
T 3cog_A 369 GISDTLIRLSVGLEDEEDLLEDLDQALKAAH 399 (403)
T ss_dssp TCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred CCCcCeEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 1113569999999888888888777776543
No 212
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.71 E-value=1.2e-15 Score=153.86 Aligned_cols=304 Identities=12% Similarity=0.035 Sum_probs=189.5
Q ss_pred CChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCc-------EEEEcchHHHHHhhhhhhcc-----
Q 013461 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD-------SILYSYGLSTMFSAIPCFCK----- 191 (442)
Q Consensus 124 ~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~-------~i~~~sG~~a~~~ai~a~~~----- 191 (442)
.+|.+.+++.+++....... ....+..++..++++.+++++|.+. ++++++|++|+..++.++..
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~---~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~ 130 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDK---EEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKR 130 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCT---TTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCCh---hhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 46889999888876533222 1233566778889999999999652 78889999999998887753
Q ss_pred ---CC-----CEEEeCCCchHHHHHHHHhcCCeEEEecCC------CHHHHHHHHHhhcccccc----------------
Q 013461 192 ---KG-----DLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKR---------------- 241 (442)
Q Consensus 192 ---~g-----d~Vi~~~~~h~s~~~~~~l~g~~v~~~~~~------d~~~Le~~l~~~~~~~~~---------------- 241 (442)
+| |.|+++. +|.++..+++..|.+++.++.+ |+++|++.+++.+.....
T Consensus 131 ~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I 209 (452)
T 2dgk_A 131 MEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPL 209 (452)
T ss_dssp HHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHH
T ss_pred HHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHH
Confidence 55 5888888 9999999999999999988753 678888877553321100
Q ss_pred -----cc------cccccc--cCCCccc----c--ccCCCCCceeEEEEeccccccC--CCcEEEcCH-HhH-HHHHhhC
Q 013461 242 -----SN------SFGVLG--RSGRGLT----E--HCGVPVDKIDIVTAAMGHALAT--EGGFCTGSA-RVV-DHQRLSS 298 (442)
Q Consensus 242 -----a~------~~g~~G--~~g~g~~----~--~~~v~~~~~diii~S~sK~lg~--~GG~v~g~~-~~i-~~l~~~~ 298 (442)
.+ ++-++- ..+.+.. . .+.+....+|+++.|++|.+.. ..|+++.++ +.+ +.+...
T Consensus 210 ~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~- 288 (452)
T 2dgk_A 210 HDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFN- 288 (452)
T ss_dssp HHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEE-
T ss_pred HHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccC-
Confidence 21 322221 1111111 1 0122224689999999996632 338887754 333 333211
Q ss_pred Ccee--------ccCCCcHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHhhccCCCceeecC----CCCCEEEEEe
Q 013461 299 SGYV--------FSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASN----PESPIVFLIL 364 (442)
Q Consensus 299 ~~~~--------~s~s~~p~~aaaa~aal~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~----~~~~i~~~~~ 364 (442)
..|. ...+.+...+.+..++++.+. ...++.++..++++++.+.|++++++++..+ +..+++.+.+
T Consensus 289 ~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~ 368 (452)
T 2dgk_A 289 VDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKL 368 (452)
T ss_dssp ECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEE
T ss_pred ccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEe
Confidence 1121 111222212222333444332 2345788889999999999998877887643 4567888887
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhh
Q 013461 365 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
...... ..+ ..++.+. |.++||.+.....+..-.. ...+|++++..+|++|++++++.|+++++.+.+
T Consensus 369 ~~~~~~-~~~---~~~l~~~-L~~~Gi~v~~~~~~~~~~~--~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 369 KDGEDP-GYT---LYDLSER-LRLRGWQVPAFTLGGEATD--IVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 436 (452)
T ss_dssp CTTCCC-SCC---HHHHHHH-HHHTTCBCCEEECSTTCTT--CEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccc-cCC---HHHHHHH-HHhcCCeeeeeeCCcccCC--eEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 532100 001 1356765 5556997654332211000 135999999999999999999999998876543
No 213
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.70 E-value=1e-15 Score=149.66 Aligned_cols=311 Identities=14% Similarity=0.106 Sum_probs=183.2
Q ss_pred EEeecCCCCCCC-CChHHHHHHHHHHHhc-CCCCCc----cCccccCcHHHHHHHHHHHhhhCCC---cEEEE-cchHHH
Q 013461 112 VNFASANYLGLI-GHEKLLESCTSALEKY-GVGSCG----PRGFYGTIDVHLDCEARIAKFLGTP---DSILY-SYGLST 181 (442)
Q Consensus 112 id~~s~~~l~~~-~~p~v~ea~~~~l~~~-g~~~~~----~~~~~g~~~~~~~le~~lA~~~g~e---~~i~~-~sG~~a 181 (442)
+|+...|..... -+|+|.+++.+.+.+| +++++. ++. .-..+..++.++.+++++|.+ +++++ ++|+++
T Consensus 11 ~~~~~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~-~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a 89 (377)
T 3e77_A 11 VDLGTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRS-SDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQ 89 (377)
T ss_dssp ----CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTS-HHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHH
T ss_pred cCcccccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCC-HHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHH
Confidence 455554433333 4689999999988764 343332 221 123577889999999999975 24553 578899
Q ss_pred HHhhhhhhccC--CCEEEeCCCchHHH--HHHHHhcCCeEEEecCC-----CHHHHHHHHHhhcccccc---cccccccc
Q 013461 182 MFSAIPCFCKK--GDLIVADEGVHWGI--QNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKR---SNSFGVLG 249 (442)
Q Consensus 182 ~~~ai~a~~~~--gd~Vi~~~~~h~s~--~~~~~l~g~~v~~~~~~-----d~~~Le~~l~~~~~~~~~---a~~~g~~G 249 (442)
+..++..+.++ ||.|++-...|++- ...++..|..++.++.+ ++++++..+.+.+..... ....|++-
T Consensus 90 ~n~a~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~ 169 (377)
T 3e77_A 90 FSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEF 169 (377)
T ss_dssp HHHHHHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTTEEC
T ss_pred HHHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCchheEc
Confidence 99999888765 89875544444442 22334446565555432 334443322221111000 22223321
Q ss_pred ----c-CCC-------ccccccCCCCCceeEEEEeccccccCCC-cEEEcCHHhHHHHHhh-----------CCceeccC
Q 013461 250 ----R-SGR-------GLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLS-----------SSGYVFSA 305 (442)
Q Consensus 250 ----~-~g~-------g~~~~~~v~~~~~diii~S~sK~lg~~G-G~v~g~~~~i~~l~~~-----------~~~~~~s~ 305 (442)
+ .|. ....+..++.++.++++.|-.|.+|..| |+++.++++++.+... .....+ .
T Consensus 170 pii~~~~~~~~~vD~~q~~g~~~id~~~~~~~~~s~~K~~gp~G~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~-~ 248 (377)
T 3e77_A 170 DFIPDVKGAVLVCDMSSNFLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY-N 248 (377)
T ss_dssp SSCCCCTTCCEEEECTTTTTSSCCCGGGCSEEEEEGGGTTSCTTCEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCS-S
T ss_pred hhhhccCCCEEEEEcccccCCCCCchhhcCEEEEecccccCCCccEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCC-C
Confidence 1 111 1111223344556788999999999777 8888776654322111 011112 2
Q ss_pred CCcHHHHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHHhhccCCCceeec-C--CCCC-EEEEEecCCCCCchhhHHHH
Q 013461 306 SLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGLSIAS-N--PESP-IVFLILEKSTGSMKNDLQLL 378 (442)
Q Consensus 306 s~~p~~aaaa~aal~~l~~~---~~~~~~l~~~~~~l~~~L~~~~g~~~~~-~--~~~~-i~~~~~~~~~~~~~~~~~~~ 378 (442)
++|.....+..++++++.+. +.+.++.+++.+++++.|++++|+.+.. . ..++ ++.+.++.... +....
T Consensus 249 Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~----~~~~~ 324 (377)
T 3e77_A 249 TPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKG----DDALE 324 (377)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTC----CHHHH
T ss_pred CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCC----chhHH
Confidence 33444455556788887654 5678889999999999999988887532 1 2355 57787753211 11111
Q ss_pred HHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 379 EDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 379 ~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
..+.+. ++++||.+.++... ..++|+|+...+|++|||+++++|+++.++
T Consensus 325 ~~~l~~-l~~~Gi~~~~g~~~-------~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 325 KRFLDK-ALELNMLSLKGHRS-------VGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp HHHHHH-HHHTTEESCBCCTT-------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHCCcEEeCCCCc-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 245554 44569998765431 245999999999999999999999998765
No 214
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.69 E-value=7.2e-15 Score=150.33 Aligned_cols=299 Identities=12% Similarity=0.050 Sum_probs=179.1
Q ss_pred HHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCC----cEEEEcchHHHHHhhhhhhcc------------
Q 013461 128 LLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP----DSILYSYGLSTMFSAIPCFCK------------ 191 (442)
Q Consensus 128 v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e----~~i~~~sG~~a~~~ai~a~~~------------ 191 (442)
+.+.+.+++......+ ....+..++..++.+.+++++|.+ ..+++++|++|+..++.++..
T Consensus 112 ~~e~l~~~~~~~~~~~---~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~ 188 (511)
T 3vp6_A 112 AGEWLTSTANTNMFTY---EIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMA 188 (511)
T ss_dssp HHHHHHHHHCCCSSCT---TTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGG
T ss_pred HHHHHHHHhccCCCCc---ccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcc
Confidence 3455555554432222 122234455566666778888865 568888999999888876654
Q ss_pred --CCCEEEeCCCchHHHHHHHHhcCC---eEEEecCC-----CHHHHHHHHHhhccc---ccc-----------------
Q 013461 192 --KGDLIVADEGVHWGIQNGLYLSRS---TVVYFKHN-----DMDSLRNTLERVTAD---NKR----------------- 241 (442)
Q Consensus 192 --~gd~Vi~~~~~h~s~~~~~~l~g~---~v~~~~~~-----d~~~Le~~l~~~~~~---~~~----------------- 241 (442)
++++|++++..|.++.++++..|. +++.++.+ |+++|++.+++.... .+.
T Consensus 189 ~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~ 268 (511)
T 3vp6_A 189 AVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQ 268 (511)
T ss_dssp GSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHH
T ss_pred cCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHH
Confidence 578999999999999999999988 88888865 899999999765211 000
Q ss_pred -------ccccccc--ccCCCccc--ccc-----CCCCCceeEEEEeccccccCC-C-cE-EEcCHHhHHHHHhhCCcee
Q 013461 242 -------SNSFGVL--GRSGRGLT--EHC-----GVPVDKIDIVTAAMGHALATE-G-GF-CTGSARVVDHQRLSSSGYV 302 (442)
Q Consensus 242 -------a~~~g~~--G~~g~g~~--~~~-----~v~~~~~diii~S~sK~lg~~-G-G~-v~g~~~~i~~l~~~~~~~~ 302 (442)
.|+.-+. +..+.|.. ..+ |+ ..+|+++.+.+|+++.+ | |+ ++.++..++........|.
T Consensus 269 ~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~--~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl 346 (511)
T 3vp6_A 269 EIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGI--ERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYL 346 (511)
T ss_dssp HHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTG--GGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTT
T ss_pred HHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCC--ccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccc
Confidence 1111111 11111211 111 22 35699999999999743 2 44 4555656665443333333
Q ss_pred ccCCC----------------cHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHhhccCCCceeec--CCCCCEEEE
Q 013461 303 FSASL----------------PPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIAS--NPESPIVFL 362 (442)
Q Consensus 303 ~s~s~----------------~p~~aaaa~aal~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~--~~~~~i~~~ 362 (442)
+.... .+..+....++++.+. ...+++++..++.+++.+.|++.+|+++.. .+..+++.+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f 426 (511)
T 3vp6_A 347 FQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCF 426 (511)
T ss_dssp CCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEE
T ss_pred cCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEE
Confidence 21110 0111222334444432 235688899999999999999888999876 467777777
Q ss_pred EecCCCC----Cchh----hHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEe-cCCCCHHHHHHHHHHHHHH
Q 013461 363 ILEKSTG----SMKN----DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRI 433 (442)
Q Consensus 363 ~~~~~~~----~~~~----~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~-~~~~t~eei~~~i~~l~~~ 433 (442)
.+..... .... ......++.++++++ |+++....+ .... ...+|+++ +..+|++||++++++|+++
T Consensus 427 ~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~~~~--~~~~--~~~lRi~~~~~~~t~~di~~ll~~i~~~ 501 (511)
T 3vp6_A 427 WYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQP--QGDK--ANFFRMVISNPAATQSDIDFLIEEIERL 501 (511)
T ss_dssp EECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEEEEE--ETTE--EEEEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred EEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEE--eCCc--eEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 6532210 0000 011234577765555 654333111 1000 12399999 7889999999999999987
Q ss_pred HHH
Q 013461 434 SAV 436 (442)
Q Consensus 434 ~~~ 436 (442)
.+.
T Consensus 502 ~~~ 504 (511)
T 3vp6_A 502 GQD 504 (511)
T ss_dssp HC-
T ss_pred HHh
Confidence 644
No 215
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.69 E-value=4.6e-15 Score=144.50 Aligned_cols=291 Identities=12% Similarity=0.085 Sum_probs=181.8
Q ss_pred CChHHHHHHHHHHHhc-CCCCCc----cCccccCcHHHHHHHHHHHhhhCCC---cEEE-EcchHHHHHhhhhhhccCCC
Q 013461 124 GHEKLLESCTSALEKY-GVGSCG----PRGFYGTIDVHLDCEARIAKFLGTP---DSIL-YSYGLSTMFSAIPCFCKKGD 194 (442)
Q Consensus 124 ~~p~v~ea~~~~l~~~-g~~~~~----~~~~~g~~~~~~~le~~lA~~~g~e---~~i~-~~sG~~a~~~ai~a~~~~gd 194 (442)
-+|+|++++.+.+.++ +++++. ++. .-..+..++.++.+++++|.+ +++| +++|++++..++..+. +||
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~-~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~-~~~ 93 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRT-KVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA-LNG 93 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSS-HHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-CSS
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCC-HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-CCC
Confidence 3689999999988764 344332 221 123477889999999999973 3555 5677899999998887 777
Q ss_pred E---EEeCCCchHHHHHHHHhcCCeEEEecCC-------CHHHHHHHHHhhcccccc---ccccccc----ccCCC----
Q 013461 195 L---IVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKR---SNSFGVL----GRSGR---- 253 (442)
Q Consensus 195 ~---Vi~~~~~h~s~~~~~~l~g~~v~~~~~~-------d~~~Le~~l~~~~~~~~~---a~~~g~~----G~~g~---- 253 (442)
. |+.....|... ..++..|.++.+++.+ ++++ + +++.+..... ....|+. .+.|.
T Consensus 94 ~~~~i~~~~~~~~~~-~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~~~t~lv~~~~~e~~tG~~~~~i~~~~~~~~v 169 (361)
T 3m5u_A 94 VCEYANTGVWTKKAI-KEAQILGVNVKTVASSEESNFDHIPRV-E--FSDNADYAYICSNNTIYGTQYQNYPKTKTPLIV 169 (361)
T ss_dssp CEEEEECSHHHHHHH-HHHHHTTCCEEEEEECTTTTSCSCCCC-C--CCTTSSEEEEESEETTTTEECSSCCCCSSCEEE
T ss_pred eEEEEeCCHHHHHHH-HHHHHcCCceEEEecccCcCCCcCChh-h--cCCCCCEEEEeCCCCCcceeCCcccccCCEEEE
Confidence 3 33333334333 3334457777666532 2333 2 3322111101 2223432 12111
Q ss_pred ---ccccccCCCCCceeEEEEeccccccCCC-cEEEcCHHhHHHHHhh-CCc-----------eeccCCCcHHHHHHHHH
Q 013461 254 ---GLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLS-SSG-----------YVFSASLPPYLASAAIT 317 (442)
Q Consensus 254 ---g~~~~~~v~~~~~diii~S~sK~lg~~G-G~v~g~~~~i~~l~~~-~~~-----------~~~s~s~~p~~aaaa~a 317 (442)
....+..++.+++|+++.|.+|.+|..| |+++.++++.+.+... ... ..+ .+++.....+..+
T Consensus 170 D~~q~~g~~~id~~~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~Tp~v~~i~~l~~ 248 (361)
T 3m5u_A 170 DASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLF-NTPPTFAIYMFNL 248 (361)
T ss_dssp ECGGGTTSSCCCCTTEEEEEEETTTTSSCTTCEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCS-SCCCHHHHHHHHH
T ss_pred EcccccCCCCCCcccCCEEEEechhccCCCccEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCC-CCccHHHHHHHHH
Confidence 1111233445578999999999999777 8999999988776541 111 111 2334444555668
Q ss_pred HHHHHhcC---hHHHHHHHHHHHHHHHhhccCCCc-eeecC--CCC-CEEEEEecCCCCCchhhHHHHHHHHHHHHHhCC
Q 013461 318 AIDVLEEN---PDLITKLKKNTAILRTGLSDIHGL-SIASN--PES-PIVFLILEKSTGSMKNDLQLLEDIADWALKEDG 390 (442)
Q Consensus 318 al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~g~-~~~~~--~~~-~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~G 390 (442)
+++++.+. +.+.++.+++.+++++.|++++|+ .+..+ ..+ .++.+.++...+ .+ .++.. .|+++|
T Consensus 249 al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~---~~----~~~~~-~L~~~g 320 (361)
T 3m5u_A 249 EMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKNKD---LE----PLFVK-EAEEAG 320 (361)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSCTT---HH----HHHHH-HHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCchh---hh----HHHHH-HHHHCC
Confidence 88887643 567888999999999999988656 54322 133 477777743100 11 24555 467779
Q ss_pred EEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 391 VFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 391 V~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
|.+..+... ..++|+++...+|++||++++++|+++.++
T Consensus 321 I~~~~g~~~-------~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 321 MIGLKGHRI-------LGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp EECCBCCTT-------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEecCCCc-------cCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 998765432 145999999999999999999999988764
No 216
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.69 E-value=2.8e-15 Score=148.56 Aligned_cols=208 Identities=13% Similarity=0.101 Sum_probs=142.4
Q ss_pred CcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHHH-----hcCCeEEEecCCCHH
Q 013461 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY-----LSRSTVVYFKHNDMD 226 (442)
Q Consensus 152 ~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~-----l~g~~v~~~~~~d~~ 226 (442)
..+...+||++||++.|.++++++++|++|+.. +.+++++||.|++..+.|++....+. ..|.+++.++.+|++
T Consensus 65 ~~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~ 143 (400)
T 3nmy_A 65 HNPTRFAYERCVAALEGGTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPA 143 (400)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSHH
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCHH
Confidence 457788999999999999999999999999987 56788999999999999987666543 359999999999999
Q ss_pred HHHHHHHhhcccccc---------------------cccccccccCCCccccccCCCCCceeEEEEeccccccCC----C
Q 013461 227 SLRNTLERVTADNKR---------------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATE----G 281 (442)
Q Consensus 227 ~Le~~l~~~~~~~~~---------------------a~~~g~~G~~g~g~~~~~~v~~~~~diii~S~sK~lg~~----G 281 (442)
++++.+++.+..... .|++-++-+.-.+..-.......++|+++.|++|++|.. |
T Consensus 144 ~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~g 223 (400)
T 3nmy_A 144 AFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVG 223 (400)
T ss_dssp HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCC
T ss_pred HHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcce
Confidence 999888653221100 222222211111100000000124789999999999743 5
Q ss_pred c--EEEcCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeec------
Q 013461 282 G--FCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIAS------ 353 (442)
Q Consensus 282 G--~v~g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~------ 353 (442)
| ++.+++++++.++.... .++..++|+.++.++..++.+ +.+.++..++.+++.+.|++.|.+....
T Consensus 224 G~~vv~~~~~~~~~l~~~~~--~~g~~~~~~~a~~~l~~l~~l---~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~ 298 (400)
T 3nmy_A 224 GIAVVGDNAELAEQMAFLQN--SIGGVQGPFDSFLALRGLKTL---PLRMRAHCENALALAQWLETHPAIEKVIYPGLAS 298 (400)
T ss_dssp EEEEECSCHHHHHHHHHHHH--HHCCBCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTT
T ss_pred eEEEEeCCHHHHHHHHHHHH--hcCCCCCHHHHHHHHHhHhHH---HHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCC
Confidence 7 45568888887765432 344566888877776666554 3467778888889999888766554221
Q ss_pred -----------CCCCCEEEEEec
Q 013461 354 -----------NPESPIVFLILE 365 (442)
Q Consensus 354 -----------~~~~~i~~~~~~ 365 (442)
...+.++++.++
T Consensus 299 ~~~~~~~~~~~~g~G~~~~~~l~ 321 (400)
T 3nmy_A 299 HPQHVLAKRQMSGFGGIVSIVLK 321 (400)
T ss_dssp STTHHHHHHHCSSCCSEEEEEET
T ss_pred CcCHHHHHHhCCCCCceEEEEeC
Confidence 113678899884
No 217
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.68 E-value=2.7e-15 Score=149.90 Aligned_cols=265 Identities=14% Similarity=0.065 Sum_probs=168.0
Q ss_pred CcHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHHH----HhcCCeEEEe-cCCCHH
Q 013461 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYF-KHNDMD 226 (442)
Q Consensus 152 ~~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~----~l~g~~v~~~-~~~d~~ 226 (442)
..+...++++++|+++|.+.++++++|++|+..++.+++++||.|+++.+.|.++...+ +..|.+++.+ +.+|++
T Consensus 56 ~~~~~~~l~~~la~~~g~~~~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~ 135 (421)
T 2ctz_A 56 MNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPE 135 (421)
T ss_dssp BCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHH
T ss_pred CChHHHHHHHHHHHHhCCCceEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCCHH
Confidence 34678999999999999989999999999999999999999999999999999887765 6789999999 988999
Q ss_pred HHHHHHHhhcccccc---------------------cccccccccC---CCccc-cccCCCCCceeEEEEeccccccCC-
Q 013461 227 SLRNTLERVTADNKR---------------------SNSFGVLGRS---GRGLT-EHCGVPVDKIDIVTAAMGHALATE- 280 (442)
Q Consensus 227 ~Le~~l~~~~~~~~~---------------------a~~~g~~G~~---g~g~~-~~~~v~~~~~diii~S~sK~lg~~- 280 (442)
++++.+++.+..... .|+.-++-+. +.|.. ..++ .+.|+++.|++|.+|..
T Consensus 136 ~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~~---~~~Di~~~s~~K~l~~~g 212 (421)
T 2ctz_A 136 EFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLA---WGAALVTHSLTKWVGGHG 212 (421)
T ss_dssp HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGG---GTCSEEEEETTTTTTCSS
T ss_pred HHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccCCccc---cCCeEEEECCcccccCCC
Confidence 999887653221100 1221111111 11110 1111 24689999999999853
Q ss_pred ---CcEEEcC--HHh----HHHHHhhC---C---------------------ceeccCCCcHHHHHHHHHHHHHHhcChH
Q 013461 281 ---GGFCTGS--ARV----VDHQRLSS---S---------------------GYVFSASLPPYLASAAITAIDVLEENPD 327 (442)
Q Consensus 281 ---GG~v~g~--~~~----i~~l~~~~---~---------------------~~~~s~s~~p~~aaaa~aal~~l~~~~~ 327 (442)
||+++.+ .++ .+.++... . ...++..++|+.++++...++.+. .
T Consensus 213 ~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~---~ 289 (421)
T 2ctz_A 213 AVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLS---L 289 (421)
T ss_dssp CCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHH---H
T ss_pred CcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHH---H
Confidence 4555552 222 22232100 0 012445678888887777776553 3
Q ss_pred HHHHHHHHHHHHHHhhccCCCceeec------------------CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhC
Q 013461 328 LITKLKKNTAILRTGLSDIHGLSIAS------------------NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKED 389 (442)
Q Consensus 328 ~~~~l~~~~~~l~~~L~~~~g~~~~~------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~ 389 (442)
+.++..++.+++.+.|.+.+++.... ...++++.+.+.. ......++.+. ++..
T Consensus 290 r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~-------~~~~~~~~~~~-l~~~ 361 (421)
T 2ctz_A 290 RAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKG-------GYEAAKRFISR-LKLI 361 (421)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETT-------HHHHHHHHHHT-CSSS
T ss_pred HHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCC-------CHHHHHHHHHh-CCcc
Confidence 56666788999999998887776542 1347789998842 11223344443 3333
Q ss_pred CEEEeeccC------ccc-ccC-----------CCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 390 GVFVVTSKR------SML-DKC-----------RLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 390 GV~v~~~~~------~~~-~~~-----------~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
++.++.+.. |.. .++ ..+..||+|++. +|++.+++.|++++
T Consensus 362 ~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~----e~~~~li~~l~~al 420 (421)
T 2ctz_A 362 SHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL----EHVEDLKAELKEAL 420 (421)
T ss_dssp EECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHHHHHHT
T ss_pred eecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHh
Confidence 444443311 100 011 112459999975 56777777777654
No 218
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.68 E-value=9.7e-16 Score=152.05 Aligned_cols=288 Identities=13% Similarity=0.108 Sum_probs=175.1
Q ss_pred eeEEEeecCCCCC----CCCChHHHHHHHHHH-HhcCCCCCccCccccCcHHHHHHHHHHHhhh-C---C----Cc--EE
Q 013461 109 KEVVNFASANYLG----LIGHEKLLESCTSAL-EKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-G---T----PD--SI 173 (442)
Q Consensus 109 ~~~id~~s~~~l~----~~~~p~v~ea~~~~l-~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~-g---~----e~--~i 173 (442)
.++|||+.+.|.. +...+.|++++. .+ +.-+. .++....|. .+|++.+|+++ + . ++ ++
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~--~~Y~~~~G~----~~lr~aia~~~~~~~~~~~~~~~i~i~ 101 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKE--KPYLLGNGT----EDFSTLTQNLIFGNNSKYIEDKKICTI 101 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCC--CCCCTTSSC----HHHHHHHHHHHHCSSCTTTTTTCEEEE
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCC--CCCCCCCCc----HHHHHHHHHHHcCCCCccccccceEEE
Confidence 3579998766533 223567777766 43 32111 111122343 46666666654 2 1 23 36
Q ss_pred EEcchHHHHHhhhhhhcc--CCCEEEeCCCchHHHHHHHHhcCCeEEEecC---C----CHHHHHHHHHhhccc------
Q 013461 174 LYSYGLSTMFSAIPCFCK--KGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---N----DMDSLRNTLERVTAD------ 238 (442)
Q Consensus 174 ~~~sG~~a~~~ai~a~~~--~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~---~----d~~~Le~~l~~~~~~------ 238 (442)
++++|++|+..++.+++. + |.|+++.|+|..+...++..|++++.++. + |+++|++.+++....
T Consensus 102 ~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~ 180 (405)
T 3k7y_A 102 QCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQ 180 (405)
T ss_dssp EEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEEC
T ss_pred EcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEe
Confidence 777788999999988887 8 99999999999999999999999988864 1 678888887652211
Q ss_pred ----ccc-----------------cccccccccC-CCccc-----------cccCCCCCceeEEEEeccccccCCC---c
Q 013461 239 ----NKR-----------------SNSFGVLGRS-GRGLT-----------EHCGVPVDKIDIVTAAMGHALATEG---G 282 (442)
Q Consensus 239 ----~~~-----------------a~~~g~~G~~-g~g~~-----------~~~~v~~~~~diii~S~sK~lg~~G---G 282 (442)
++. .|++-++-+. ..++. ..+ ....+..|+++||||+||+.| |
T Consensus 181 ~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~l~GlRiG 259 (405)
T 3k7y_A 181 ISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKF-EEKNIAFSVCQSFSKNMSLYGERAG 259 (405)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHH-HTTTCCEEEEEECTTTSCCTTTTEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHH-HhcCCcEEEEeeCCccCCCccccce
Confidence 111 2222222110 00110 000 011245789999999999877 9
Q ss_pred EEE---cCHHhHHHHHhhC---CceeccCCCcHHHHHHHHHHHHH-------HhcChHHHHHHHHHHHHHHHhhc----c
Q 013461 283 FCT---GSARVVDHQRLSS---SGYVFSASLPPYLASAAITAIDV-------LEENPDLITKLKKNTAILRTGLS----D 345 (442)
Q Consensus 283 ~v~---g~~~~i~~l~~~~---~~~~~s~s~~p~~aaaa~aal~~-------l~~~~~~~~~l~~~~~~l~~~L~----~ 345 (442)
|++ +++++++.+.... ....++ +.+.+.++++.++++. .++...++++++++++++.+.|+ +
T Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~ 338 (405)
T 3k7y_A 260 ALHIVCKNQEEKKIVFNNLCFIVRKFYS-SPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKK 338 (405)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHTTTS-SCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhcccC-CCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 974 4677665443110 011222 2244544444445542 12224466779999999999998 7
Q ss_pred CCC----ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHH
Q 013461 346 IHG----LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEA 421 (442)
Q Consensus 346 ~~g----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~e 421 (442)
+ | +++..+..+.++|+.++ + ++++++ +++||++.|+ -||+++. .+++
T Consensus 339 ~-g~~~~~~~~~p~gg~f~~~~l~--------~-----~~~~~L-~~~gV~v~p~-------------~Ris~a~-~~~~ 389 (405)
T 3k7y_A 339 Y-NLNYDWNVYKKQRGLFSFVPLL--------A-----KIAEHL-KTHHIYIINN-------------GRINVSG-ITKN 389 (405)
T ss_dssp G-TCCCCGGGGSSCCSSEEECGGG--------G-----GGTTTT-TTTTEECCTT-------------SEEEGGG-CCTT
T ss_pred c-CCCCCCccccCCceEEEecCCC--------H-----HHHHHH-HHCCEeecCC-------------CeEEEec-cCHH
Confidence 6 4 55554444445554331 1 234444 7789988752 3999974 5779
Q ss_pred HHHHHHHHHHHHHH
Q 013461 422 DLVKACESLKRISA 435 (442)
Q Consensus 422 ei~~~i~~l~~~~~ 435 (442)
+|++++++|+++++
T Consensus 390 ~i~~~~~~i~~~~~ 403 (405)
T 3k7y_A 390 NVDYIADKICLSLS 403 (405)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
No 219
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.68 E-value=8.5e-16 Score=152.40 Aligned_cols=246 Identities=13% Similarity=0.087 Sum_probs=158.6
Q ss_pred ChHHHHHHHHHHH---hcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEE---EcchHHHHHhhhhhhccCCCEEEe
Q 013461 125 HEKLLESCTSALE---KYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSIL---YSYGLSTMFSAIPCFCKKGDLIVA 198 (442)
Q Consensus 125 ~p~v~ea~~~~l~---~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~---~~sG~~a~~~ai~a~~~~gd~Vi~ 198 (442)
+++|.+++.++.. .++. +.++ .|+. ..+.+||+.+|+++|.+.+++ +++|++|+..++.+++++||.|++
T Consensus 31 ~~~vl~a~~~~~~~~~~~~~-~~~~--~y~~-~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~ 106 (409)
T 3jzl_A 31 QAKVLDAFQENKVSDFHFHP-STGY--GYDD-EGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLY 106 (409)
T ss_dssp HHHHHHHHHHTTCCGGGGCC-CCTT--CTTC-HHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEE
T ss_pred HHHHHHHHHHhhhhhhccCC-CcCC--CCCh-hHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEE
Confidence 3677777766531 1221 2221 2332 348899999999999999988 899999999999999999999999
Q ss_pred CC-CchHHHHHH----------HHhcCCeEEEecC-----CCHHHHHHHHHhhcccc--------c---c----------
Q 013461 199 DE-GVHWGIQNG----------LYLSRSTVVYFKH-----NDMDSLRNTLERVTADN--------K---R---------- 241 (442)
Q Consensus 199 ~~-~~h~s~~~~----------~~l~g~~v~~~~~-----~d~~~Le~~l~~~~~~~--------~---~---------- 241 (442)
+. +.|..+... ++..|.+++.++. .|++++++.+++.++-. . .
T Consensus 107 ~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~ 186 (409)
T 3jzl_A 107 ITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMI 186 (409)
T ss_dssp CSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHH
T ss_pred eCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHH
Confidence 98 888877643 3456888888887 58888888776432210 0 0
Q ss_pred ----c--ccccccccC--CCccccccCCCCCceeEEEEeccccccC----CCcEEEcCHHhHHHHHhh--CCceeccCCC
Q 013461 242 ----S--NSFGVLGRS--GRGLTEHCGVPVDKIDIVTAAMGHALAT----EGGFCTGSARVVDHQRLS--SSGYVFSASL 307 (442)
Q Consensus 242 ----a--~~~g~~G~~--g~g~~~~~~v~~~~~diii~S~sK~lg~----~GG~v~g~~~~i~~l~~~--~~~~~~s~s~ 307 (442)
. |+.-++-+. +.+... ......++|++++|++|++|. .|||+++++++++.++.. ..+...+.+.
T Consensus 187 ~la~~~~~~~~livD~a~~~~~~~-~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~ 265 (409)
T 3jzl_A 187 VFVKNINPEVIVFVDNCYGEFVEY-QEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGA 265 (409)
T ss_dssp HHHHHHCTTCEEEEECTTCTTTSS-CCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCC
T ss_pred HHHHhhCCCCEEEEeCCccccccc-CCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccc
Confidence 2 333222211 111100 011113479999999999974 379999999999998763 2222222222
Q ss_pred cHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCC-----EEEEEecCCCCCchhhHHHHHHHH
Q 013461 308 PPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP-----IVFLILEKSTGSMKNDLQLLEDIA 382 (442)
Q Consensus 308 ~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~-----i~~~~~~~~~~~~~~~~~~~~~i~ 382 (442)
++..+.+++..++.+ +.++++..+++.++.+.|+++ |+++.+. .++ ++.+.+++ ...+.+++
T Consensus 266 ~~~~~~~~l~gl~~~---~~r~~~~~~~a~~la~~L~~~-g~~v~p~-~~~~~~~~i~~i~l~~--------~~~~~~~~ 332 (409)
T 3jzl_A 266 SLYSLLEMYQGFFLA---PHVTAQAIKGARFTAAMLAEF-GVEADPV-WDAPRTDLIQSVSFHN--------KEKMVAFA 332 (409)
T ss_dssp CTTCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSSSCCEEECSC--------HHHHHHHH
T ss_pred cHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHhC-CCcccCC-CCCCCccEEEEEEeCC--------HHHHHHHH
Confidence 221123344444433 557888999999999999987 7777533 444 78888742 23455777
Q ss_pred HHHHHhC
Q 013461 383 DWALKED 389 (442)
Q Consensus 383 ~~~L~~~ 389 (442)
+. |++.
T Consensus 333 ~~-L~~~ 338 (409)
T 3jzl_A 333 QA-IQAA 338 (409)
T ss_dssp HH-HHHT
T ss_pred HH-HHhc
Confidence 75 5554
No 220
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.67 E-value=2.2e-15 Score=152.07 Aligned_cols=266 Identities=15% Similarity=0.096 Sum_probs=166.1
Q ss_pred cHHHHHHHHHHHhhhCCCcEEEEcchHHHHHhhhhhhccCCCEEEeCCCchHHHHHH----HHhcCCeEEEecCCCHHHH
Q 013461 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDSL 228 (442)
Q Consensus 153 ~~~~~~le~~lA~~~g~e~~i~~~sG~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~----~~l~g~~v~~~~~~d~~~L 228 (442)
.+...++++++++++|.++++++++|++|+..++. ++++||.|+++.+.|.++... ++..|.+++.++.+|++++
T Consensus 132 ~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l 210 (464)
T 1ibj_A 132 NPTRDALESLLAKLDKADRAFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEV 210 (464)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHH
Confidence 34789999999999999999999999999988875 789999999999999887654 4567899999999899999
Q ss_pred HHHHHhhcccccc---------------------cccccccccC--CCccccccCCCCCceeEEEEeccccccC----CC
Q 013461 229 RNTLERVTADNKR---------------------SNSFGVLGRS--GRGLTEHCGVPVDKIDIVTAAMGHALAT----EG 281 (442)
Q Consensus 229 e~~l~~~~~~~~~---------------------a~~~g~~G~~--g~g~~~~~~v~~~~~diii~S~sK~lg~----~G 281 (442)
++.++..+..... .|+.-++-+. ..|.. ...+. .++|+++.|++|+++. .+
T Consensus 211 ~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~-~~~~~-~~~div~~S~sK~~~g~~Gl~~ 288 (464)
T 1ibj_A 211 AAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVL-SRPLE-LGADIVMHSATKFIAGHSDVMA 288 (464)
T ss_dssp HHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTT-CCGGG-TTCSEEEEETTTTTTCSSCCCC
T ss_pred HHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCccccc-CChhh-cCCEEEEECCcccccCCCCCcE
Confidence 8887542211000 2222221111 11110 00111 2579999999999964 34
Q ss_pred cEEEcC-HHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHH----------hhccCCCc
Q 013461 282 GFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRT----------GLSDIHGL 349 (442)
Q Consensus 282 G~v~g~-~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~-~~~~~~~l~~~~~~l~~----------~L~~~~g~ 349 (442)
||++++ +++++.++.... .++...+|+.+.++.++++.+.. .....+......+++.+ .|.+++++
T Consensus 289 G~l~~~~~~l~~~l~~~~~--~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~ 366 (464)
T 1ibj_A 289 GVLAVKGEKLAKEVYFLQN--SEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGH 366 (464)
T ss_dssp EEEEECSHHHHHHHHHHHH--HTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTH
T ss_pred EEEEEChHHHHHHHHHHHH--hcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcch
Confidence 899888 478777754321 12344577777777777654321 11122233333344432 34444555
Q ss_pred eeecCC---CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccC------c------ccc-----cCCC-CC
Q 013461 350 SIASNP---ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR------S------MLD-----KCRL-PV 408 (442)
Q Consensus 350 ~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~------~------~~~-----~~~~-~~ 408 (442)
++..+. .++++++.++. . ....++++. |+..||.++.+.. + ..+ .... +.
T Consensus 367 ~~~~~~~~g~g~~~~~~l~~------~--~~~~~~~~~-L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~ 437 (464)
T 1ibj_A 367 HLHFSQAKGAGSVFSFITGS------V--ALSKHLVET-TKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTED 437 (464)
T ss_dssp HHHTTTCSCCCSEEEEECSC------H--HHHHHHHHH-CSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTT
T ss_pred HHHhccCCCCceEEEEEECC------H--HHHHHHHHh-cCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcC
Confidence 554322 35788888731 1 112346654 5556888876641 1 000 0011 34
Q ss_pred ceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 409 GIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 409 ~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
.+|++++. ||++++++.|++++++
T Consensus 438 ~iRlsvg~----edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 438 LVRISAGI----EDVDDLISDLDIAFKT 461 (464)
T ss_dssp CEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred eEEEEeCC----CCHHHHHHHHHHHHhh
Confidence 59999986 8999999999988753
No 221
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.67 E-value=3e-15 Score=149.04 Aligned_cols=244 Identities=12% Similarity=0.094 Sum_probs=158.7
Q ss_pred hHHHHHHHHHHHh---cCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEE---EcchHHHHHhhhhhhccCCCEEEeC
Q 013461 126 EKLLESCTSALEK---YGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSIL---YSYGLSTMFSAIPCFCKKGDLIVAD 199 (442)
Q Consensus 126 p~v~ea~~~~l~~---~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~---~~sG~~a~~~ai~a~~~~gd~Vi~~ 199 (442)
++|.+++.+.... ++. +.++ .|+. ..+.+||+++|+++|.+.+++ +++|++|+..++.++++|||.|+++
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~-~~gy--~Y~~-~g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~ 122 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTN-SSGY--GYND-IGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSI 122 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCC-CCTT--CTTC-HHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEEC
T ss_pred HHHHHHHHHHHHHHHhccc-CcCC--CCCc-hhHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEe
Confidence 7788887765432 221 2221 2222 348899999999999999998 8999999999999999999999999
Q ss_pred C-CchHHHH-----------HHHHhcCCeEEEecC----CCHHHHHHHHHh--hcccc-----------cc---------
Q 013461 200 E-GVHWGIQ-----------NGLYLSRSTVVYFKH----NDMDSLRNTLER--VTADN-----------KR--------- 241 (442)
Q Consensus 200 ~-~~h~s~~-----------~~~~l~g~~v~~~~~----~d~~~Le~~l~~--~~~~~-----------~~--------- 241 (442)
+ +.|.... ..++..|.+++.++. .|++++++.+++ .++-. ..
T Consensus 123 ~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i 202 (427)
T 3hvy_A 123 CGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEI 202 (427)
T ss_dssp SSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHH
T ss_pred CCCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHH
Confidence 8 7777654 234556889998887 789999999873 22110 00
Q ss_pred -----c--ccccccccC--CCccccccCCCCCceeEEEEeccccccC----CCcEEEcCHHhHHHHHhh--CCceeccCC
Q 013461 242 -----S--NSFGVLGRS--GRGLTEHCGVPVDKIDIVTAAMGHALAT----EGGFCTGSARVVDHQRLS--SSGYVFSAS 306 (442)
Q Consensus 242 -----a--~~~g~~G~~--g~g~~~~~~v~~~~~diii~S~sK~lg~----~GG~v~g~~~~i~~l~~~--~~~~~~s~s 306 (442)
. |+.-++-+. +.+......+ ..++|++++|++|++|. .||++++++++++.++.. ..+...+.+
T Consensus 203 ~~ia~~~~~g~~livD~a~~~~~~~~~p~-~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~ 281 (427)
T 3hvy_A 203 IKSIREVNENVIVFVDNCYGEFVEEKEPT-DVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECG 281 (427)
T ss_dssp HHHHHHHCSSSEEEEECTTCTTTSSSCGG-GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCC
T ss_pred HHHHHHhCCCCEEEEECCccccccCCCCc-ccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccC
Confidence 2 232222111 1111000011 13479999999999974 579999999999998763 222222232
Q ss_pred CcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCC-----EEEEEecCCCCCchhhHHHHHHH
Q 013461 307 LPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP-----IVFLILEKSTGSMKNDLQLLEDI 381 (442)
Q Consensus 307 ~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~-----i~~~~~~~~~~~~~~~~~~~~~i 381 (442)
.++..+..+...++.+ +.++++..++..++.+.|++. |+++.+. .++ ++.+.+++ ...+.++
T Consensus 282 ~~~~~a~~~~~gl~~~---~~r~~~~~~~a~~la~~L~~~-g~~V~p~-~~~~~~~li~~~~l~~--------~~~~~~f 348 (427)
T 3hvy_A 282 STFGVMRSLYEGLFMA---PHVTIEAVKGAVFCARIMELA-GFDVLPK-YNDKRTDIIQAIKFND--------EKKLIDF 348 (427)
T ss_dssp CCTTCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSSSEEEEECSS--------HHHHHHH
T ss_pred CCHHHHHHHHHhHhHH---HHHHHHHHHHHHHHHHHHHhC-CCeecCC-CCCCCceEEEEEeCCC--------HHHHHHH
Confidence 2222233344444433 557888999999999999987 7777543 444 88888842 2335567
Q ss_pred HHHHHHh
Q 013461 382 ADWALKE 388 (442)
Q Consensus 382 ~~~~L~~ 388 (442)
++. |+.
T Consensus 349 ~~~-l~~ 354 (427)
T 3hvy_A 349 IKG-IQT 354 (427)
T ss_dssp HHH-HHH
T ss_pred HHH-hcc
Confidence 764 444
No 222
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.66 E-value=5e-15 Score=146.64 Aligned_cols=284 Identities=13% Similarity=0.065 Sum_probs=172.7
Q ss_pred CChHHHHHHHHHHHhcCCCCCc-cCccccCcHHHHHHHHHHHhhhCCC---cEEE-EcchHHHHHhhhhhhccCC-CEEE
Q 013461 124 GHEKLLESCTSALEKYGVGSCG-PRGFYGTIDVHLDCEARIAKFLGTP---DSIL-YSYGLSTMFSAIPCFCKKG-DLIV 197 (442)
Q Consensus 124 ~~p~v~ea~~~~l~~~g~~~~~-~~~~~g~~~~~~~le~~lA~~~g~e---~~i~-~~sG~~a~~~ai~a~~~~g-d~Vi 197 (442)
.+|++++++.++ +....+ ........+...++++.+|+++|.+ ++++ +++|++++..++.+++++| |+|
T Consensus 51 ~~~~v~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~~gv~~v- 125 (398)
T 2fyf_A 51 VRLEQLQTLTTT----AAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKRSLHL- 125 (398)
T ss_dssp CCHHHHHGGGTT----TTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCSSCEEEE-
T ss_pred CCHHHHHHHhhc----CCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcCCCeEEE-
Confidence 467888887652 211111 0111122356789999999999975 4566 6788999999999999888 544
Q ss_pred eCCCchHHHHH-HHHhc--CCeEEEecCCC--HHHHHHHHHhhcccccc---c---ccccc---------------ccc-
Q 013461 198 ADEGVHWGIQN-GLYLS--RSTVVYFKHND--MDSLRNTLERVTADNKR---S---NSFGV---------------LGR- 250 (442)
Q Consensus 198 ~~~~~h~s~~~-~~~l~--g~~v~~~~~~d--~~~Le~~l~~~~~~~~~---a---~~~g~---------------~G~- 250 (442)
....|..... .+... |++++.++.++ ..+. ..+++.+. . ...|. +-+
T Consensus 126 -~~~~~~~~~~~~~~~~~~g~~~~~v~~~~g~~~~~-----~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~vivD~ 199 (398)
T 2fyf_A 126 -TYGEFSAKFASAVSKNPFVGEPIIITSDPGSAPEP-----QTDPSVDVIAWAHNETSTGVAVAVRRPEGSDDALVVIDA 199 (398)
T ss_dssp -ECSHHHHHHHHHHHHCTTSCCCEEEECCTTCCCCC-----CCCTTCSEEEEESEETTTTEECCCCCCTTCC-CEEEEEC
T ss_pred -eCCHHHHHHHHHHHHhCCCCceEEEecCCCCCCCc-----cccCCCCEEEEeCcCCCcceecchHHhhhhcCCeEEEEe
Confidence 5556643222 23333 66766665431 1111 01111111 0 01121 111
Q ss_pred -CCCccccccCCCCCceeEEEEeccccccCCC--cEEEcCHHhHHHHHhhC--------------------CceeccCCC
Q 013461 251 -SGRGLTEHCGVPVDKIDIVTAAMGHALATEG--GFCTGSARVVDHQRLSS--------------------SGYVFSASL 307 (442)
Q Consensus 251 -~g~g~~~~~~v~~~~~diii~S~sK~lg~~G--G~v~g~~~~i~~l~~~~--------------------~~~~~s~s~ 307 (442)
.+.|. ..++..++|+++.|++|++|+.| ||+++++++++.++... ..+.+ .+.
T Consensus 200 a~~~~~---~~~~~~~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~ 275 (398)
T 2fyf_A 200 TSGAGG---LPVDIAETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTY-NTP 275 (398)
T ss_dssp TTTTTT---SCCCGGGCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCS-SCC
T ss_pred ccccCC---cccCcccCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCC-CCC
Confidence 00010 11112347999999999998774 67889999988764210 01122 234
Q ss_pred cHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHhhccCCCceeec-CC--CCC-EEEEEecCCCCCchhhHHHHHH
Q 013461 308 PPYLASAAITAIDVLEE---NPDLITKLKKNTAILRTGLSDIHGLSIAS-NP--ESP-IVFLILEKSTGSMKNDLQLLED 380 (442)
Q Consensus 308 ~p~~aaaa~aal~~l~~---~~~~~~~l~~~~~~l~~~L~~~~g~~~~~-~~--~~~-i~~~~~~~~~~~~~~~~~~~~~ 380 (442)
+...++++.++++.+.+ .++++++++++++++.+.|++++|+++.. .+ .++ ++++.++... + ..+
T Consensus 276 ~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~ 347 (398)
T 2fyf_A 276 AIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDV-----D---AGT 347 (398)
T ss_dssp CHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTS-----C---HHH
T ss_pred CHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCC-----C---HHH
Confidence 55555566677876543 35678889999999999999887888763 12 356 8888874211 1 235
Q ss_pred HHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 381 IADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 381 i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
+.+.+. ++||.+.++... .+ +..+||+++..+|++|+++++++|++++++
T Consensus 348 l~~~L~-~~gI~v~~g~~~-~~----~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 348 VAKILR-ANGIVDTEPYRK-LG----RNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp HHHHHH-HTTCBCCSCCTT-TC----SSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HCCcEEecCccc-CC----CCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 777544 459998765211 10 245999999989999999999999988653
No 223
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.65 E-value=4e-15 Score=158.40 Aligned_cols=276 Identities=11% Similarity=0.097 Sum_probs=175.6
Q ss_pred cCcHHHHHHHHHHHhhhCCCcEEEEcchH-HHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC--C----
Q 013461 151 GTIDVHLDCEARIAKFLGTPDSILYSYGL-STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--N---- 223 (442)
Q Consensus 151 g~~~~~~~le~~lA~~~g~e~~i~~~sG~-~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~--~---- 223 (442)
.......++++.+++++|.++++++++|+ +++..++.+++++||.|++++++|.++..++.++|+++++++. +
T Consensus 202 ~~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~~~g~ 281 (755)
T 2vyc_A 202 DHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGI 281 (755)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBCTTSC
T ss_pred cCccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCCcccc
Confidence 34566789999999999999888888885 8899999999999999999999999999999999999988763 1
Q ss_pred ---------CHHHHHHHHHhhcccc-------cc---------------------------------cccccc-cccCCC
Q 013461 224 ---------DMDSLRNTLERVTADN-------KR---------------------------------SNSFGV-LGRSGR 253 (442)
Q Consensus 224 ---------d~~~Le~~l~~~~~~~-------~~---------------------------------a~~~g~-~G~~g~ 253 (442)
|++++++.+++..... +. +|+.+. ++..++
T Consensus 282 ~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~~ 361 (755)
T 2vyc_A 282 IGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYA 361 (755)
T ss_dssp BCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGGT
T ss_pred ccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECCCCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcccC
Confidence 7899999987531100 01 222110 111000
Q ss_pred ccccccC--CC-CCceeEEEEeccccccC-C-CcEEEcCHH--hH--HHHHhhCCceeccCCCcHHHHHHHHHHHHHHhc
Q 013461 254 GLTEHCG--VP-VDKIDIVTAAMGHALAT-E-GGFCTGSAR--VV--DHQRLSSSGYVFSASLPPYLASAAITAIDVLEE 324 (442)
Q Consensus 254 g~~~~~~--v~-~~~~diii~S~sK~lg~-~-GG~v~g~~~--~i--~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~ 324 (442)
+.....+ .+ .++.+|++.|+||++++ . ||+++.+++ .+ ..+... .....+++++....++..+|++.+..
T Consensus 362 ~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~-~~~~~s~sp~~~~iaal~aA~~~l~~ 440 (755)
T 2vyc_A 362 DHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQA-YMMHATTSPLYAICASNDVAVSMMDG 440 (755)
T ss_dssp TSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHH-HHHTSCSSCCHHHHHHHHHHHHHHST
T ss_pred CcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 0011012 11 12345699999999974 3 577766544 22 122211 11122445566666666678887764
Q ss_pred --ChHHHHHHHHHHHHHHHhhccCCC---------ceeecCC--------------------------------------
Q 013461 325 --NPDLITKLKKNTAILRTGLSDIHG---------LSIASNP-------------------------------------- 355 (442)
Q Consensus 325 --~~~~~~~l~~~~~~l~~~L~~~~g---------~~~~~~~-------------------------------------- 355 (442)
..++.+++.++.+++++.|+++++ +++.++.
T Consensus 441 ~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 520 (755)
T 2vyc_A 441 NSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHG 520 (755)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhhhccCccccccc
Confidence 356888999999999999987655 5443221
Q ss_pred -----C-----C-CEEEEEecC--CCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHH
Q 013461 356 -----E-----S-PIVFLILEK--STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD 422 (442)
Q Consensus 356 -----~-----~-~i~~~~~~~--~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~ee 422 (442)
. . ..+.+.++. ..|..........++.+ .|+++||.+.... +..+|++++...|+++
T Consensus 521 ~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~-~L~~~gI~~e~~~---------~~~v~~~~~~g~t~~~ 590 (755)
T 2vyc_A 521 FKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTA-WLGRHGIVPTRTT---------DFQIMFLFSMGVTRGK 590 (755)
T ss_dssp CTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHH-HHHTTTCCCSEEC---------SSEEEEECCTTCCTTT
T ss_pred ccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHH-HHHHCCCEEeecC---------CCeEEEEECCCCCHHH
Confidence 1 1 233444431 01100000001124554 5777898765432 2459999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013461 423 LVKACESLKRISAVV 437 (442)
Q Consensus 423 i~~~i~~l~~~~~~~ 437 (442)
+++++++|+++.+..
T Consensus 591 ~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 591 WGTLVNTLCSFKRHY 605 (755)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999986543
No 224
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.65 E-value=4.3e-15 Score=147.88 Aligned_cols=246 Identities=10% Similarity=0.078 Sum_probs=157.6
Q ss_pred hHHHHHHHHHH--HhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEE---EcchHHHHHhhhhhhccCCCEEEeCC
Q 013461 126 EKLLESCTSAL--EKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSIL---YSYGLSTMFSAIPCFCKKGDLIVADE 200 (442)
Q Consensus 126 p~v~ea~~~~l--~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~---~~sG~~a~~~ai~a~~~~gd~Vi~~~ 200 (442)
++|.+++.++. ..+..++.++ .|+ ...+.+||+.+|+++|.+.+++ +++|++|+..++.+++++||.|+++.
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~gy--~y~-~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~ 122 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSSGY--GYG-DIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVC 122 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTT--CTT-CHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESS
T ss_pred HHHHHHHHHhchhHHhcCCCCCC--CCC-HHHHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeC
Confidence 67777776643 1111222222 222 3348899999999999999988 89999999999999999999999998
Q ss_pred -CchHHHHH-----------HHHhcCCeEEEecC-----CCHHHHHHHHH--hhcccc-----------cc---------
Q 013461 201 -GVHWGIQN-----------GLYLSRSTVVYFKH-----NDMDSLRNTLE--RVTADN-----------KR--------- 241 (442)
Q Consensus 201 -~~h~s~~~-----------~~~l~g~~v~~~~~-----~d~~~Le~~l~--~~~~~~-----------~~--------- 241 (442)
+.|..+.. .+...|.+++.++. .|++++++.++ ..++-. ..
T Consensus 123 ~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i 202 (427)
T 3i16_A 123 GEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSI 202 (427)
T ss_dssp SSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHH
T ss_pred CCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHH
Confidence 88876653 33456888888887 58899999887 322110 00
Q ss_pred -----c--ccccccccCCCccccccCCC--CCceeEEEEeccccccC----CCcEEEcCHHhHHHHHhhCCceeccCCCc
Q 013461 242 -----S--NSFGVLGRSGRGLTEHCGVP--VDKIDIVTAAMGHALAT----EGGFCTGSARVVDHQRLSSSGYVFSASLP 308 (442)
Q Consensus 242 -----a--~~~g~~G~~g~g~~~~~~v~--~~~~diii~S~sK~lg~----~GG~v~g~~~~i~~l~~~~~~~~~s~s~~ 308 (442)
. |+.-++-+.-.+.. .+... ..++|++++|++|++|. .|||+++++++++.++.......++....
T Consensus 203 ~~la~~~~~g~~livD~a~~~~-~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~ 281 (427)
T 3i16_A 203 VDCVKNIRKDIICFVDNCYGEF-MDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECG 281 (427)
T ss_dssp HHHHHHHCTTSEEEEECTTTTT-SSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCC
T ss_pred HHHHHHhCCCCEEEEECCCccc-cccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCC
Confidence 2 22222211111100 00111 13479999999999974 57999999999999876321111222222
Q ss_pred H-HH-HHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCC-----EEEEEecCCCCCchhhHHHHHHH
Q 013461 309 P-YL-ASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP-----IVFLILEKSTGSMKNDLQLLEDI 381 (442)
Q Consensus 309 p-~~-aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~-----i~~~~~~~~~~~~~~~~~~~~~i 381 (442)
| +. +..++..++ ..+.++++..+++.++.+.|++. |+++.+. .++ ++.+.+++ ...+.++
T Consensus 282 ~~~~~a~~~l~gl~---~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~-~~~~~~~~i~~i~l~~--------~~~~~~f 348 (427)
T 3i16_A 282 STFGVVRSMYQGLF---LAPHISMEALKGAILCSRIMELA-GFEVMPK-YDEKRSDIIQSIKFND--------KDKLIEF 348 (427)
T ss_dssp CCTTCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSSSCEEEECSS--------HHHHHHH
T ss_pred ccHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhC-CCeecCC-CCCCCccEEEEEEECC--------HHHHHHH
Confidence 2 22 233333343 33568889999999999999987 7777533 555 88888842 2335577
Q ss_pred HHHHHHhC
Q 013461 382 ADWALKED 389 (442)
Q Consensus 382 ~~~~L~~~ 389 (442)
++. |+..
T Consensus 349 ~~~-l~~~ 355 (427)
T 3i16_A 349 CKG-IQTG 355 (427)
T ss_dssp HHH-HHHT
T ss_pred HHH-Hhhc
Confidence 775 5443
No 225
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.63 E-value=8.4e-15 Score=150.85 Aligned_cols=314 Identities=11% Similarity=0.087 Sum_probs=176.1
Q ss_pred EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHH-HhhhC--C-----CcEEEEcchHHHH
Q 013461 111 VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARI-AKFLG--T-----PDSILYSYGLSTM 182 (442)
Q Consensus 111 ~id~~s~~~l~~~~~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~l-A~~~g--~-----e~~i~~~sG~~a~ 182 (442)
+|||+.+.+ ++ ++|.+++++.+.+.. .++. ...|..++.+++.+.. .+..+ . +++++++++++++
T Consensus 106 ~i~l~~g~~-~~-~~~~~~~al~~~~~~--~~Y~---~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal 178 (546)
T 2zy4_A 106 SLSYVRDQL-GL-DPAAFLHEMVDGILG--CNYP---VPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAM 178 (546)
T ss_dssp HHHHHHHTS-CC-CHHHHHHHHHHHHHT--CSCC---SSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHH
T ss_pred hhecccCCC-CC-CChHHHHHHHHhhhc--CCCC---CCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHH
Confidence 678876653 44 457788888777742 2221 1223444444433332 22221 1 3556666667899
Q ss_pred Hhhhhh-----hccCCCEEEeCCCchHHHHHHHHhc--CCeEEEecC-------CCHHHHHHHHHhhccc-------ccc
Q 013461 183 FSAIPC-----FCKKGDLIVADEGVHWGIQNGLYLS--RSTVVYFKH-------NDMDSLRNTLERVTAD-------NKR 241 (442)
Q Consensus 183 ~~ai~a-----~~~~gd~Vi~~~~~h~s~~~~~~l~--g~~v~~~~~-------~d~~~Le~~l~~~~~~-------~~~ 241 (442)
..++.+ ++++||.|+++.++|..+...+.+. |++++.++. .|+++|++.+....+. ++.
T Consensus 179 ~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPt 258 (546)
T 2zy4_A 179 AYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPP 258 (546)
T ss_dssp HHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSSS
T ss_pred HHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCCC
Confidence 888876 5799999999999999988876654 577777764 2566666543221110 000
Q ss_pred ---------------c--cccc--ccccCCCc-cc----cccCCCCCceeEEEEeccccccCCC---cEEEcCHH-hHHH
Q 013461 242 ---------------S--NSFG--VLGRSGRG-LT----EHCGVPVDKIDIVTAAMGHALATEG---GFCTGSAR-VVDH 293 (442)
Q Consensus 242 ---------------a--~~~g--~~G~~g~g-~~----~~~~v~~~~~diii~S~sK~lg~~G---G~v~g~~~-~i~~ 293 (442)
+ +..+ ++-+.-.+ +. ...... .+.+|++.||||++|++| ||++++++ +++.
T Consensus 259 G~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~-~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~ 337 (546)
T 2zy4_A 259 SVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAIC-PENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDL 337 (546)
T ss_dssp CBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHC-GGGEEEEEESTTTTTCGGGCEEEEEEESSCHHHH
T ss_pred CccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhC-CCCEEEEEeCccccCCCCcceEEEEECCHHHHHH
Confidence 1 2222 11111000 10 000111 256899999999998777 99998875 7776
Q ss_pred HHhhC-----------------------------------CceeccCCCcHHHHHHHHHH-HHHHhc----ChHHHHHHH
Q 013461 294 QRLSS-----------------------------------SGYVFSASLPPYLASAAITA-IDVLEE----NPDLITKLK 333 (442)
Q Consensus 294 l~~~~-----------------------------------~~~~~s~s~~p~~aaaa~aa-l~~l~~----~~~~~~~l~ 333 (442)
+.... ..+...+...+.+.+++..+ ...+++ ...+++.++
T Consensus 338 l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~ 417 (546)
T 2zy4_A 338 ALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIR 417 (546)
T ss_dssp HHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 53110 00112222234333332211 122321 235677888
Q ss_pred HHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh--------HHHHHHHHHHHHHhCCEEEeeccCcccccCC
Q 013461 334 KNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND--------LQLLEDIADWALKEDGVFVVTSKRSMLDKCR 405 (442)
Q Consensus 334 ~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~ 405 (442)
++.+.+.+.|. . ++.+..+..+.++++.+..-....... .....+++.++++++||.+.|+..+...
T Consensus 418 ~r~~~l~~~L~-~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~--- 492 (546)
T 2zy4_A 418 RRETTLYRELG-M-PPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSN--- 492 (546)
T ss_dssp HHHHHHHGGGT-S-SCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTCS---
T ss_pred HHHHHHHHhcC-C-CcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCCC---
Confidence 88888888885 4 454433334556677763100000000 0001233334566679999998776431
Q ss_pred CCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhh
Q 013461 406 LPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 406 ~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
+..+||++. ..+++++++++++|++++.+..+
T Consensus 493 -~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~~ 524 (546)
T 2zy4_A 493 -RPSGRASLA-NLNEYEYAAIGRALRKMADELYA 524 (546)
T ss_dssp -SCEEEEESS-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCeEEEEec-cCCHHHHHHHHHHHHHHHHHHHH
Confidence 245999997 36899999999999999887653
No 226
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.62 E-value=1.2e-13 Score=140.42 Aligned_cols=270 Identities=13% Similarity=0.076 Sum_probs=165.9
Q ss_pred CcHHHHHHHHHHHhhhCCCc-----------EEEEcchHHHHHhhhhhhccC---------C---------C-EEEeCCC
Q 013461 152 TIDVHLDCEARIAKFLGTPD-----------SILYSYGLSTMFSAIPCFCKK---------G---------D-LIVADEG 201 (442)
Q Consensus 152 ~~~~~~~le~~lA~~~g~e~-----------~i~~~sG~~a~~~ai~a~~~~---------g---------d-~Vi~~~~ 201 (442)
..++..++.+.+++++|.+. .+++++|++|+..++.+...+ | + +|+++..
T Consensus 111 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~ 190 (486)
T 1js3_A 111 CTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQ 190 (486)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETT
T ss_pred HHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCC
Confidence 34555566667788888653 688999999998888665321 3 3 4788999
Q ss_pred chHHHHHHHHhcCCeEEEecCC-----CHHHHHHHHHhhccc-----ccc----------------------cccccccc
Q 013461 202 VHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTAD-----NKR----------------------SNSFGVLG 249 (442)
Q Consensus 202 ~h~s~~~~~~l~g~~v~~~~~~-----d~~~Le~~l~~~~~~-----~~~----------------------a~~~g~~G 249 (442)
.|.++.++++..|.+++.++.+ |+++|++.+++.+.. ... .|++-++-
T Consensus 191 ~h~s~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhv 270 (486)
T 1js3_A 191 AHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHV 270 (486)
T ss_dssp CCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEE
T ss_pred CcHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEE
Confidence 9999999999999999998863 789999999765431 000 22221111
Q ss_pred --cCCCccc---cc----cCCCCCceeEEEEeccccccCC--CcEEEcC-HHh-HHHHHhhCCceec-------------
Q 013461 250 --RSGRGLT---EH----CGVPVDKIDIVTAAMGHALATE--GGFCTGS-ARV-VDHQRLSSSGYVF------------- 303 (442)
Q Consensus 250 --~~g~g~~---~~----~~v~~~~~diii~S~sK~lg~~--GG~v~g~-~~~-i~~l~~~~~~~~~------------- 303 (442)
..|.+.. ++ .++ .++|.++.+++|.++.+ .|+++.+ +.. .+.+... ..|..
T Consensus 271 D~a~g~~~~~~~~~~~~~~g~--~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~-~~yl~~~~~~~~~~~~~~ 347 (486)
T 1js3_A 271 DAAYAGSAFICPEFRHLLNGV--EFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLD-PVYLKHSHQGSGLITDYR 347 (486)
T ss_dssp ECTTGGGGGGSTTTGGGGTTG--GGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC-------------CCSCCCGG
T ss_pred ehhhHHHHHHCHHHHHHhcCc--cccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCC-chhhCCCcccccCCCCcc
Confidence 1111111 00 122 35789999999999753 3776665 433 2322110 11111
Q ss_pred ------cCCCcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHH
Q 013461 304 ------SASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQL 377 (442)
Q Consensus 304 ------s~s~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 377 (442)
+.....+.+.+++..+. .+...++.++..++++++.+.|++++++++..++..+++.+.+... + ..
T Consensus 348 ~~~~~~~rr~~~~~~~~al~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~------~-~~ 419 (486)
T 1js3_A 348 HWQLPLGRRFRSLKMWFVFRMYG-VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGS------D-GL 419 (486)
T ss_dssp GSSSCSCCCCTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSC------H-HH
T ss_pred ccCCCCCCchhHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEEEecCh------H-HH
Confidence 11112233333333221 1223457788889999999999988899987656777888777421 1 12
Q ss_pred HHHHHHHHHHhCCEE-EeeccCcccccCCCCCceEEEe-cCCCCHHHHHHHHHHHHHHHHHHhh
Q 013461 378 LEDIADWALKEDGVF-VVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 378 ~~~i~~~~L~~~GV~-v~~~~~~~~~~~~~~~~iRi~~-~~~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
..++.+.+.++ |+. +.+..... ...+|+++ +...|++||++++++|+++++++.+
T Consensus 420 ~~~l~~~L~~~-g~~~~~~~~~~~------~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~ 476 (486)
T 1js3_A 420 NEALLERINSA-RKIHLVPCRLRG------QFVLRFAICSRKVESGHVRLAWEHIRGLAAELLA 476 (486)
T ss_dssp HHHHHHHHHHH-TSCBCEEEEETT------EEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhc-CCEEEEEEEECC------EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 35677765555 644 33322110 23599997 4557899999999999999877654
No 227
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.61 E-value=1.5e-13 Score=140.41 Aligned_cols=277 Identities=14% Similarity=0.137 Sum_probs=169.8
Q ss_pred CcHHHHHHHHHHHhhhCCC----cEEEEcchHHHHHhhhhhhcc--------CC-----C-EEEeCCCchHHHHHHHHhc
Q 013461 152 TIDVHLDCEARIAKFLGTP----DSILYSYGLSTMFSAIPCFCK--------KG-----D-LIVADEGVHWGIQNGLYLS 213 (442)
Q Consensus 152 ~~~~~~~le~~lA~~~g~e----~~i~~~sG~~a~~~ai~a~~~--------~g-----d-~Vi~~~~~h~s~~~~~~l~ 213 (442)
...+..++.+.+++++|.+ ..+++++|++|+..++.++.. +| | +|+++...|.++.++++..
T Consensus 130 ~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~ 209 (504)
T 2okj_A 130 FVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL 209 (504)
T ss_dssp HHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHc
Confidence 3445566667789999965 568888999999998887642 56 7 7899999999999998887
Q ss_pred CC---eEEEecCC-----CHHHHHHHHHhhcc---cccc------------------------ccccccc--ccCCCccc
Q 013461 214 RS---TVVYFKHN-----DMDSLRNTLERVTA---DNKR------------------------SNSFGVL--GRSGRGLT 256 (442)
Q Consensus 214 g~---~v~~~~~~-----d~~~Le~~l~~~~~---~~~~------------------------a~~~g~~--G~~g~g~~ 256 (442)
|. +++.++.+ |+++|++.+++... .... .|++.++ +..+.+..
T Consensus 210 g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~ 289 (504)
T 2okj_A 210 GFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLL 289 (504)
T ss_dssp TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGG
T ss_pred CCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHH
Confidence 66 78888865 78999998876311 0000 1111111 11111111
Q ss_pred -------cccCCCCCceeEEEEeccccccCC--CcEEEcCH-HhHHHHHhhCCceeccCC-------------------C
Q 013461 257 -------EHCGVPVDKIDIVTAAMGHALATE--GGFCTGSA-RVVDHQRLSSSGYVFSAS-------------------L 307 (442)
Q Consensus 257 -------~~~~v~~~~~diii~S~sK~lg~~--GG~v~g~~-~~i~~l~~~~~~~~~s~s-------------------~ 307 (442)
...++ ..+|+++.+++|.++.+ .|+++.++ ++++.......+|.++.. .
T Consensus 290 ~~~~~~~~~~g~--~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~ 367 (504)
T 2okj_A 290 MSRKHRHKLNGI--ERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHV 367 (504)
T ss_dssp GCTTTGGGGTTG--GGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBC
T ss_pred hCHhhHhhcCCc--ccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCc
Confidence 01122 35799999999999743 37777765 466543322233332211 1
Q ss_pred cHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeec--CCCCCEEEEEecCCC--C---Cchhh---HHH
Q 013461 308 PPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIAS--NPESPIVFLILEKST--G---SMKND---LQL 377 (442)
Q Consensus 308 ~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~--~~~~~i~~~~~~~~~--~---~~~~~---~~~ 377 (442)
.++.+.++++++.. +...++.++..++++++.+.|++++++++.. .+..+++.+...... + ..... ...
T Consensus 368 ~~l~~~a~l~~lg~-~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~ 446 (504)
T 2okj_A 368 DIFKFWLMWKAKGT-VGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKV 446 (504)
T ss_dssp CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTH
T ss_pred cHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHH
Confidence 24444444445432 2234577888999999999999888998875 355666666542210 0 00000 011
Q ss_pred HHHHHHHHHHhCCE-EEeeccCcccccCCCCCceEEEec-CCCCHHHHHHHHHHHHHHHHHH
Q 013461 378 LEDIADWALKEDGV-FVVTSKRSMLDKCRLPVGIRLFVS-AAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 378 ~~~i~~~~L~~~GV-~v~~~~~~~~~~~~~~~~iRi~~~-~~~t~eei~~~i~~l~~~~~~~ 437 (442)
..++.+.++++ |+ ++.+..... .+..+|+++. ..+|++||++++++|+++++++
T Consensus 447 ~~~l~~~L~~~-G~~~~~~~~~~~-----~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 447 APKIKALMMES-GTTMVGYQPQGD-----KANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp HHHHHHHHHHH-TSCEEEEEEETT-----EEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhC-CcEEEEeeEECC-----ceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34567765555 74 444322111 0134999996 8899999999999999887654
No 228
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.60 E-value=7.5e-15 Score=144.33 Aligned_cols=292 Identities=12% Similarity=0.079 Sum_probs=165.8
Q ss_pred ChHHHHHHHHHHHh-cCCCCCc----cCccccCcHHHHHHHHHHHhhhCCC---cEEE-EcchHHHHHhhhhhhccCCCE
Q 013461 125 HEKLLESCTSALEK-YGVGSCG----PRGFYGTIDVHLDCEARIAKFLGTP---DSIL-YSYGLSTMFSAIPCFCKKGDL 195 (442)
Q Consensus 125 ~p~v~ea~~~~l~~-~g~~~~~----~~~~~g~~~~~~~le~~lA~~~g~e---~~i~-~~sG~~a~~~ai~a~~~~gd~ 195 (442)
+|+|++++.+.+.+ ++++++. ++. .-..+..++.++.+|+++|.+ ++++ +++|++++..++..+.++||.
T Consensus 39 p~~V~~a~~~~~~~~~~n~~s~~~~~h~~-~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~~gd~ 117 (386)
T 3qm2_A 39 PAEVLKLAQQELCDWHGLGTSVMEISHRG-KEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTT 117 (386)
T ss_dssp CHHHHHHHTCC------------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCTTCCE
T ss_pred CHHHHHHHHHHHHhccccCccccccCCCC-HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccCCCCe
Confidence 68999999988766 3444331 111 122466789999999999974 3555 368899999999999999997
Q ss_pred EEeCCCchHH--HHHHHHhcCCeEEEecCC--------CHHHHHHHHHhhcccccc---ccccccc-c---cCCCccc--
Q 013461 196 IVADEGVHWG--IQNGLYLSRSTVVYFKHN--------DMDSLRNTLERVTADNKR---SNSFGVL-G---RSGRGLT-- 256 (442)
Q Consensus 196 Vi~~~~~h~s--~~~~~~l~g~~v~~~~~~--------d~~~Le~~l~~~~~~~~~---a~~~g~~-G---~~g~g~~-- 256 (442)
|++-...|++ ....++..| .+.+++.+ ++++++..+.+.+..... ....|+. - +-+.|..
T Consensus 118 v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~pi~~i~~g~~~~ 196 (386)
T 3qm2_A 118 ADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDETPDFGPEVVVT 196 (386)
T ss_dssp EEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTTEECCCCCCCCTTCCEE
T ss_pred EEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCchhhhcCCCEEE
Confidence 6432222222 222233445 66655432 234444433322211100 2223442 1 1011111
Q ss_pred -------cccCCCCCceeEEEEeccccccCCC-cEEEcCHHhHHHHHhh-----------CCceeccCCCcHHHHHHHHH
Q 013461 257 -------EHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLS-----------SSGYVFSASLPPYLASAAIT 317 (442)
Q Consensus 257 -------~~~~v~~~~~diii~S~sK~lg~~G-G~v~g~~~~i~~l~~~-----------~~~~~~s~s~~p~~aaaa~a 317 (442)
.+..++.++.|+++.|-+|.+|..| |+++.++++.+.+... ..+..+.+ .|.....+..+
T Consensus 197 vDa~qs~g~~pidv~~~~~~~~s~hK~lGP~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gT-p~v~~i~~l~~ 275 (386)
T 3qm2_A 197 ADFSSTILSAPLDVSRYGVIYAGAQKNIGPAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNT-PPTFAWYLSGL 275 (386)
T ss_dssp EECTTTTTSSCCCGGGCSEEEEETTTTTCCTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC--------CCSHHHHHHH
T ss_pred EEcccccCCCCCCccccCEEEEecccccCCCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCC-CcHHHHHHHHH
Confidence 1223334456788899999999777 8888887764322110 01111222 23233444556
Q ss_pred HHHHHhc---ChHHHHHHHHHHHHHHHhhccCCCc-eeecC--CCCC-EEEEEecCCCCCchhhHHHHHHHHHHHHHhCC
Q 013461 318 AIDVLEE---NPDLITKLKKNTAILRTGLSDIHGL-SIASN--PESP-IVFLILEKSTGSMKNDLQLLEDIADWALKEDG 390 (442)
Q Consensus 318 al~~l~~---~~~~~~~l~~~~~~l~~~L~~~~g~-~~~~~--~~~~-i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~G 390 (442)
+++++.+ .+.+.++.+++.+++++.|+++ ++ ....+ ..++ ++.+.++.. ..+ .++... |+++|
T Consensus 276 Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~f~~~~~----~~~----~~~~~~-L~~~g 345 (386)
T 3qm2_A 276 VFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVPFQLADN----TLD----KVFLEE-SFAAG 345 (386)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEEEEESSG----GGH----HHHHHH-HHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEEEECCCc----ccc----HHHHHH-HHHCC
Confidence 7777654 3567788999999999999887 65 22211 2344 778877421 011 245554 66779
Q ss_pred EEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 013461 391 VFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 436 (442)
Q Consensus 391 V~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~ 436 (442)
|.+..+... ..++|+|+...+|++|||+++++|+++.++
T Consensus 346 I~~~~g~~~-------~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 346 LHALKGHRV-------VGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp EECCBCCTT-------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEeCCCCC-------cCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 998765432 145999999999999999999999988754
No 229
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.60 E-value=3.8e-13 Score=137.79 Aligned_cols=278 Identities=15% Similarity=0.108 Sum_probs=167.3
Q ss_pred ccCcHHHHHHHHHHHhhhCCC--cEEEEcchHHHHHhhhhhhc-------c-CCC------EEEeCCCchHHHHHHHHhc
Q 013461 150 YGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCFC-------K-KGD------LIVADEGVHWGIQNGLYLS 213 (442)
Q Consensus 150 ~g~~~~~~~le~~lA~~~g~e--~~i~~~sG~~a~~~ai~a~~-------~-~gd------~Vi~~~~~h~s~~~~~~l~ 213 (442)
.+..++..++++.+++++|.+ .++++++|++|+..++.++. + +|| .|++++..|.++.++++..
T Consensus 144 ~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~ 223 (515)
T 2jis_A 144 PVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFL 223 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHc
Confidence 345567778888999999975 67888899999998887763 2 576 8999999999999999888
Q ss_pred CC---eEEEecCC-----CHHHHHHHHHhhcc---cccc------------------------ccccccc--ccCCCccc
Q 013461 214 RS---TVVYFKHN-----DMDSLRNTLERVTA---DNKR------------------------SNSFGVL--GRSGRGLT 256 (442)
Q Consensus 214 g~---~v~~~~~~-----d~~~Le~~l~~~~~---~~~~------------------------a~~~g~~--G~~g~g~~ 256 (442)
|. +++.++.+ |+++|++.+++... .... .|+..++ +..+.+..
T Consensus 224 g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~ 303 (515)
T 2jis_A 224 GLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVL 303 (515)
T ss_dssp TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGG
T ss_pred CCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHH
Confidence 77 88888764 78999998876311 0000 1111111 11111111
Q ss_pred c-------ccCCCCCceeEEEEeccccccC-CC-cEEEcCHH--hHHHHHhhCCceecc-------------------CC
Q 013461 257 E-------HCGVPVDKIDIVTAAMGHALAT-EG-GFCTGSAR--VVDHQRLSSSGYVFS-------------------AS 306 (442)
Q Consensus 257 ~-------~~~v~~~~~diii~S~sK~lg~-~G-G~v~g~~~--~i~~l~~~~~~~~~s-------------------~s 306 (442)
. ..++ .++|+++.|++|.++. .| |+++.+++ +++.......+|.+. ..
T Consensus 304 ~~~~~~~~~~g~--~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr 381 (515)
T 2jis_A 304 LSQTHRHLLDGI--QRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRR 381 (515)
T ss_dssp GCTTTGGGGTTG--GGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCC
T ss_pred hChhhHhhcCCC--ccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCc
Confidence 1 1122 2579999999999974 33 77777655 655422111122111 01
Q ss_pred CcHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCC--C--CchhhHHH----H
Q 013461 307 LPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKST--G--SMKNDLQL----L 378 (442)
Q Consensus 307 ~~p~~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~i~~~~~~~~~--~--~~~~~~~~----~ 378 (442)
...+.+.++++++.. +...++.++..++++++.+.|++++++++..++....+.+...++. + ....-... .
T Consensus 382 ~~al~~~~~l~~lg~-~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~ 460 (515)
T 2jis_A 382 VDCLKLWLMWKAQGD-QGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVA 460 (515)
T ss_dssp CCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHH
T ss_pred ccHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHH
Confidence 113333333344421 2234577888999999999999888998876555566666542210 0 00000011 1
Q ss_pred HHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEe-cCCCCHHHHHHHHHHHHHHHH
Q 013461 379 EDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISA 435 (442)
Q Consensus 379 ~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~-~~~~t~eei~~~i~~l~~~~~ 435 (442)
.++.+.++++ |+.+..... ... .+..+|+++ +..+|++||++++++|+++++
T Consensus 461 ~~l~~~l~~~-G~~~~~~~~--~~~--~~~~lRis~~~~~~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 461 PVLKERMVKE-GSMMIGYQP--HGT--RGNFFRVVVANSALTCADMDFLLNELERLGQ 513 (515)
T ss_dssp HHHHHHHHHH-TSCEEEEEE--ETT--EEEEEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-CCEEEEEEE--ECC--ceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 2355555544 754422111 000 013499999 889999999999999988764
No 230
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.59 E-value=3.7e-14 Score=142.34 Aligned_cols=286 Identities=15% Similarity=0.117 Sum_probs=161.3
Q ss_pred ChHHHHHHH---HHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcE--EEEcchHHHHHhhhhh-hccCCCEEEe
Q 013461 125 HEKLLESCT---SALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDS--ILYSYGLSTMFSAIPC-FCKKGDLIVA 198 (442)
Q Consensus 125 ~p~v~ea~~---~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~--i~~~sG~~a~~~ai~a-~~~~gd~Vi~ 198 (442)
.|.+++++. +.+..|+. ..+....|..+...++++.+++++|.+.. +++++|+.++.++..+ ..++||.|++
T Consensus 78 ~p~~v~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv 155 (438)
T 1wyu_A 78 VPPVVQALAARGEFLTAYTP--YQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLV 155 (438)
T ss_dssp CCHHHHHHHTSHHHHHCCSC--CSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CcHHHHHHHhcchhhhcCCC--CcchhhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 455555553 33344421 11234567778899999999999998744 5666677443433333 3578999999
Q ss_pred CCCchHHHHHHHH----hcCCeEEEecCCC-HHHHHHHHHhhcccccc--------------------ccccccc--cc-
Q 013461 199 DEGVHWGIQNGLY----LSRSTVVYFKHND-MDSLRNTLERVTADNKR--------------------SNSFGVL--GR- 250 (442)
Q Consensus 199 ~~~~h~s~~~~~~----l~g~~v~~~~~~d-~~~Le~~l~~~~~~~~~--------------------a~~~g~~--G~- 250 (442)
+.+.|+++...++ ..|++++.++..+ .-++++ +...+..... .|+.-++ .+
T Consensus 156 ~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~~d~~~-i~~~t~~v~i~~pn~tG~~~~l~~i~~la~~~g~~vivd~d~ 234 (438)
T 1wyu_A 156 SQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPLPE-VGEEVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADP 234 (438)
T ss_dssp ETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCCCC-CCTTEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCT
T ss_pred cCccCHhHHHHHHHHHHHCCCEEEEEcCcCCccCHHH-hCCCeEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEech
Confidence 9999999886653 4788888876321 111111 2111110000 1111111 11
Q ss_pred CCCccccccCCC-CCceeEEEEecccccc------C-CCcEEEcCHHhHHHHHhhC----------Cceec---------
Q 013461 251 SGRGLTEHCGVP-VDKIDIVTAAMGHALA------T-EGGFCTGSARVVDHQRLSS----------SGYVF--------- 303 (442)
Q Consensus 251 ~g~g~~~~~~v~-~~~~diii~S~sK~lg------~-~GG~v~g~~~~i~~l~~~~----------~~~~~--------- 303 (442)
...|. +..+ ..+.|++++| +|.|| . .+||+++++++++.+.... ..|.+
T Consensus 235 ~a~g~---~~~~~~~g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~ 310 (438)
T 1wyu_A 235 LSLGV---LKPPGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYI 310 (438)
T ss_dssp TGGGT---BCCHHHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHH
T ss_pred hhccC---cCCCccCCCCEEEEC-CcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeecccccccc
Confidence 10111 0110 0136899988 66533 2 3489999998876642110 01111
Q ss_pred ---cCCC-----cHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHhhccCCCceeecCC-CCCEEEEEecCCCCCch
Q 013461 304 ---SASL-----PPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNP-ESPIVFLILEKSTGSMK 372 (442)
Q Consensus 304 ---s~s~-----~p~~aaaa~aal~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~-~~~i~~~~~~~~~~~~~ 372 (442)
.++. +.+.+.++...+..+.. .+++.++.+++++++.+.|++++|+++..+. ...++.+.++.
T Consensus 311 r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~------ 384 (438)
T 1wyu_A 311 RRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPK------ 384 (438)
T ss_dssp HGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSS------
T ss_pred chhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCCC------
Confidence 0111 22222222222443322 3457788899999999999998899886532 11222333210
Q ss_pred hhHHHHHHHHHHHHHhCCEEE--eeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 373 NDLQLLEDIADWALKEDGVFV--VTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 373 ~~~~~~~~i~~~~L~~~GV~v--~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
+ ..++++.++ ++||.+ .++.++. +..+|++++..+|++|+++++++|++++
T Consensus 385 -~---~~~~~~~L~-~~gi~v~~~~~~~~~------~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 385 -D---PEAVRRALA-ERGFHGATPVPREYG------ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp -C---HHHHHHHHH-HTTCCCCEECCTTSC------SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred -C---HHHHHHHHH-HCCceeccccccccC------CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 1 236777654 569988 4443221 3469999999999999999999998763
No 231
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.58 E-value=2e-14 Score=143.66 Aligned_cols=249 Identities=12% Similarity=0.058 Sum_probs=156.7
Q ss_pred ChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhhCCCcEEE---EcchHHHHHhhhhhhccCCCEEEeCC-
Q 013461 125 HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSIL---YSYGLSTMFSAIPCFCKKGDLIVADE- 200 (442)
Q Consensus 125 ~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~g~e~~i~---~~sG~~a~~~ai~a~~~~gd~Vi~~~- 200 (442)
++++.+++.+....... .....+.......+.++++.+++++|.+.+.+ +++|++|+..++.+++++||.|+++.
T Consensus 37 ~~~vl~A~~~~~~~~~~-~~~~~g~~y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~ 115 (431)
T 3ht4_A 37 QFRVLESFGKHKISDSH-FIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITG 115 (431)
T ss_dssp HHHHHHHHHHTTCCGGG-SCCCCTTCCSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSS
T ss_pred HHHHHHHHHHhchhhhh-cCCCCCCCCChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 46777777664221111 01111111133568899999999999988766 88999999999999999999999988
Q ss_pred CchHHHHHHHHh----------cCCeEEEecCC-----CHHHHHHHHHhhcccc--------cc----------------
Q 013461 201 GVHWGIQNGLYL----------SRSTVVYFKHN-----DMDSLRNTLERVTADN--------KR---------------- 241 (442)
Q Consensus 201 ~~h~s~~~~~~l----------~g~~v~~~~~~-----d~~~Le~~l~~~~~~~--------~~---------------- 241 (442)
+.|.++...+.+ .|++++.++++ |++++++.+++.++.. ..
T Consensus 116 ~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la 195 (431)
T 3ht4_A 116 KPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFV 195 (431)
T ss_dssp SCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHH
T ss_pred CCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHH
Confidence 889888876644 58899999874 8889988876432210 00
Q ss_pred -c--ccccccccC--CCccccccCCCCCceeEEEEecccccc----CCCcEEEcCHHhHHHHHhhC--CceeccCCCcHH
Q 013461 242 -S--NSFGVLGRS--GRGLTEHCGVPVDKIDIVTAAMGHALA----TEGGFCTGSARVVDHQRLSS--SGYVFSASLPPY 310 (442)
Q Consensus 242 -a--~~~g~~G~~--g~g~~~~~~v~~~~~diii~S~sK~lg----~~GG~v~g~~~~i~~l~~~~--~~~~~s~s~~p~ 310 (442)
. ++.-++-+. +.+... ......++|++++|++|++| ..|||+++++++++.++... .+...+.+.++.
T Consensus 196 ~~~~~~~~livDea~~~~~~~-~~~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~ 274 (431)
T 3ht4_A 196 KEIKPDVVVFVDNCYGEFIEE-QEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLY 274 (431)
T ss_dssp HHHCTTCEEEEECTTCTTSSS-CCGGGTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCS
T ss_pred HhhCCCCEEEEeCCChhhccC-CCccccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHH
Confidence 2 333222111 111100 00011246899999999975 46899999999999886522 222222222222
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhccCCCceeecCCCCC-----EEEEEecCCCCCchhhHHHHHHHHHHH
Q 013461 311 LASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP-----IVFLILEKSTGSMKNDLQLLEDIADWA 385 (442)
Q Consensus 311 ~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~~~-----i~~~~~~~~~~~~~~~~~~~~~i~~~~ 385 (442)
.+.++...++.+ +.++++..++.+++.+.|+++ |+++.+. .++ ++.+.+++ ...+.++++.
T Consensus 275 ~~~~~~~~l~~~---~~~~~~~~~~a~~l~~~L~~~-g~~v~p~-~~~~~~~li~~i~l~~--------~~~~~~~~~~- 340 (431)
T 3ht4_A 275 SLQEMYQGFFLA---PHVAGQALKGAIFTAAFLEKL-GMNTSPA-WNAPRTDLIQSVQFDD--------KDRMIAFCQA- 340 (431)
T ss_dssp CSHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TCCEESC-TTSCCSSSCCEEECCC--------HHHHHHHHHH-
T ss_pred HHHHHHhHhhhH---HHHHHHHHHHHHHHHHHHHhC-cCEecCC-CCCCCccEEEEEEeCC--------HHHHHHHHHH-
Confidence 233344455444 457788889999999999887 7766432 333 77777732 2335567775
Q ss_pred HHhC
Q 013461 386 LKED 389 (442)
Q Consensus 386 L~~~ 389 (442)
|++.
T Consensus 341 l~~~ 344 (431)
T 3ht4_A 341 IQYA 344 (431)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 4443
No 232
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.58 E-value=2.4e-14 Score=144.05 Aligned_cols=258 Identities=14% Similarity=0.124 Sum_probs=158.4
Q ss_pred CcHHHHHHHHHHHhhhCCCcEEEEcch-HHHHHhhhhhhccCCCEEEeCCCchHHHHHHHHhcCCeEEEecC--CCH---
Q 013461 152 TIDVHLDCEARIAKFLGTPDSILYSYG-LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--NDM--- 225 (442)
Q Consensus 152 ~~~~~~~le~~lA~~~g~e~~i~~~sG-~~a~~~ai~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~--~d~--- 225 (442)
......++++.+|+ +|.++.+++++| ++++..++.+++++||.|++++++|.++..++...|+++++++. ++-
T Consensus 55 ~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~ 133 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGHFIETHQSPLTNH 133 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTCCEEECEEEECTTTSS
T ss_pred cchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCCeEEEEeCeeccccCc
Confidence 34567899999999 998766666655 59999999999999999999999999999999999999888765 320
Q ss_pred ---HHHHHHHHhhcccccc--------------------cccccccccCCCcc-c---c-ccCCCCCceeEEEEeccccc
Q 013461 226 ---DSLRNTLERVTADNKR--------------------SNSFGVLGRSGRGL-T---E-HCGVPVDKIDIVTAAMGHAL 277 (442)
Q Consensus 226 ---~~Le~~l~~~~~~~~~--------------------a~~~g~~G~~g~g~-~---~-~~~v~~~~~diii~S~sK~l 277 (442)
-++++++...+..... .|+.-++-+.-.+. . . .......+.|+++.|+||++
T Consensus 134 ~~~~d~~~l~~~~~~~v~~~~~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~Di~~~S~~K~l 213 (446)
T 2x3l_A 134 YNKVNLSRLNNDGHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTL 213 (446)
T ss_dssp EEEEEC-------CCEEEEESSCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTCSEEEECHHHHS
T ss_pred CCCCCHHHHcCCCceEEEEECCCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCCCEEEECCcccc
Confidence 1222221111110000 11111111111110 0 0 01111123589999999976
Q ss_pred c-C-CCcEEEcCHHhHH--HHHhhCCceeccCCCcHHHHHHHHHHHHHHhcC-hH-HHHHHHHHHHHHHHhhccCCCcee
Q 013461 278 A-T-EGGFCTGSARVVD--HQRLSSSGYVFSASLPPYLASAAITAIDVLEEN-PD-LITKLKKNTAILRTGLSDIHGLSI 351 (442)
Q Consensus 278 g-~-~GG~v~g~~~~i~--~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~~~-~~-~~~~l~~~~~~l~~~L~~~~g~~~ 351 (442)
+ . .+|++++++++++ .++... ....+++.+...+++..++++.++.. .+ +.++.+++.+++++. |+++
T Consensus 214 ~~~~g~g~l~~~~~~i~~~~~~~~~-~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~-----g~~~ 287 (446)
T 2x3l_A 214 PALTMGSVLYIHKNAPYRENIIEYL-SYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK-----GFEM 287 (446)
T ss_dssp SSCTTCEEEEEETTCTTHHHHHHHH-HHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----TCEE
T ss_pred ccccccEEEEEcCCcCCHHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-----CCEE
Confidence 4 3 3489988877655 222211 11123344555555555677777642 23 777778888887776 6666
Q ss_pred ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHHHHHHH
Q 013461 352 ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLK 431 (442)
Q Consensus 352 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~i~~l~ 431 (442)
........+++.+.. .+ ..++.+. |.++||.+..... ..+|++++..+|++|+ +++++|+
T Consensus 288 ~~~~~~~~l~i~~~~------~~---~~~l~~~-L~~~GI~v~~~g~---------~~iRi~~~~~~t~e~i-~l~~aL~ 347 (446)
T 2x3l_A 288 LQVDDPLKLLIKYEG------FT---GHDIQNW-FMNAHIYLELADD---------YQALAILPLWHHDDTY-LFDSLLR 347 (446)
T ss_dssp EECSSTTEEEEECTT------SC---HHHHHHH-HHHTTEEESEECS---------SCEEEECCCCCTTCCC-CHHHHHH
T ss_pred CcCCCCeEEEEEeCC------cC---HHHHHHH-HHHCCCEEEecCC---------CEEEEEeecCCCHHHH-HHHHHHH
Confidence 543333356666631 01 2356665 4445999862211 3499999998999999 9999999
Q ss_pred HHHHH
Q 013461 432 RISAV 436 (442)
Q Consensus 432 ~~~~~ 436 (442)
++++.
T Consensus 348 ~~~~~ 352 (446)
T 2x3l_A 348 KIEDM 352 (446)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 88654
No 233
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.56 E-value=5.3e-14 Score=139.78 Aligned_cols=294 Identities=9% Similarity=0.023 Sum_probs=163.6
Q ss_pred eeEEEeecCCCCCCCC----ChHHHHHHHHHHHhcCCCCCccCccccCcHHHHHHHHHHHhhh-CC----C--cEEEEcc
Q 013461 109 KEVVNFASANYLGLIG----HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-GT----P--DSILYSY 177 (442)
Q Consensus 109 ~~~id~~s~~~l~~~~----~p~v~ea~~~~l~~~g~~~~~~~~~~g~~~~~~~le~~lA~~~-g~----e--~~i~~~s 177 (442)
+..||++-+-|..-.+ -|.|++|.++.++.-... .+....|. .+|++.+++++ |. + ..+.+.+
T Consensus 44 ~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~--~Y~p~~G~----p~lr~aia~~~~g~~~~~~~~~~~qt~g 117 (420)
T 4h51_A 44 GPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDY--EYLPISGY----QPFIDEAVKIIYGNTVELENLVAVQTLS 117 (420)
T ss_dssp SSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCC--CCCCTTCC----HHHHHHHHHHHHC---CGGGEEEEEEEH
T ss_pred CCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCC--CCCCcCCh----HHHHHHHHHHhcCCCccccccceeeecC
Confidence 3457876554443222 267788777666542111 12223344 46666666654 32 1 2344567
Q ss_pred hHHHHHhh----hhhhccCCCEEEeCCCchHHHHHHHHhcCCe-EEEecCC-------CHHHHHHHHHhhcccccc----
Q 013461 178 GLSTMFSA----IPCFCKKGDLIVADEGVHWGIQNGLYLSRST-VVYFKHN-------DMDSLRNTLERVTADNKR---- 241 (442)
Q Consensus 178 G~~a~~~a----i~a~~~~gd~Vi~~~~~h~s~~~~~~l~g~~-v~~~~~~-------d~~~Le~~l~~~~~~~~~---- 241 (442)
|+.|+..+ ..++.++||.|++++|+++++...++..|.+ +..++.. |.+.+.+.++..++....
T Consensus 118 gtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~ 197 (420)
T 4h51_A 118 GTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQ 197 (420)
T ss_dssp HHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEES
T ss_pred chHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeC
Confidence 77665443 4566789999999999999999999999986 4343321 556666666655443221
Q ss_pred -----------------------ccccccccc-CCCccc----c--cc----CCCCCceeEEEEeccccccCCC---cEE
Q 013461 242 -----------------------SNSFGVLGR-SGRGLT----E--HC----GVPVDKIDIVTAAMGHALATEG---GFC 284 (442)
Q Consensus 242 -----------------------a~~~g~~G~-~g~g~~----~--~~----~v~~~~~diii~S~sK~lg~~G---G~v 284 (442)
.|++-++-+ -..++. + .+ ..+..+..+++.||||++++.| ||+
T Consensus 198 ~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~ 277 (420)
T 4h51_A 198 CAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTL 277 (420)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEE
Confidence 222211111 000110 0 00 0011234688999999998877 888
Q ss_pred EcCHHhHHHHH-------hhCCceeccCCCcHHHHHHHHHHHHH-------HhcChHHHHHHHHHHHHHHHhhccCCC--
Q 013461 285 TGSARVVDHQR-------LSSSGYVFSASLPPYLASAAITAIDV-------LEENPDLITKLKKNTAILRTGLSDIHG-- 348 (442)
Q Consensus 285 ~g~~~~i~~l~-------~~~~~~~~s~s~~p~~aaaa~aal~~-------l~~~~~~~~~l~~~~~~l~~~L~~~~g-- 348 (442)
++..+..+... ..... .++ +.|...+.++...+.. .++...++++++++++.|.+.|.++ |
T Consensus 278 ~~~~~~~~~~~~~~~~l~~~~r~-~~s-~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~-g~~ 354 (420)
T 4h51_A 278 SLLLKDKTKRADVKSVMDSLIRE-EYT-CPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRL-QTP 354 (420)
T ss_dssp EEECSCHHHHHHHHHHHHHHHHT-TTS-SCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCS
T ss_pred EecccCHHHHHHHHHHHHHhhhc-ccC-cchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Confidence 77544333221 11111 122 2233444433334321 1123457788899999999999876 3
Q ss_pred --ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEeeccCcccccCCCCCceEEEecCCCCHHHHHHH
Q 013461 349 --LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKA 426 (442)
Q Consensus 349 --~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV~v~~~~~~~~~~~~~~~~iRi~~~~~~t~eei~~~ 426 (442)
+....++.+.|.++-+. . +.++ .|+++||++.++ .||++.. .|++.|+++
T Consensus 355 ~~~~~i~~q~GmF~~~gls-------~------e~v~-~L~e~~Vy~~~~-------------gRis~Ag-l~~~ni~~~ 406 (420)
T 4h51_A 355 GSWEHVINQIGMFSFLGLS-------K------AQCE-YCQNHNIFITVS-------------GRANMAG-LTHETALML 406 (420)
T ss_dssp SCCTHHHHCCSSEEECCCC-------H------HHHH-HHHHTTEECCTT-------------CEEEGGG-CCHHHHHHH
T ss_pred CCCCeecCCCceEEecCcC-------H------HHHH-HHHhCCEEEcCC-------------CEEEecc-CCHHHHHHH
Confidence 32222334544443221 1 2344 467789987542 4999975 689999999
Q ss_pred HHHHHHHHHHHhh
Q 013461 427 CESLKRISAVVLR 439 (442)
Q Consensus 427 i~~l~~~~~~~~~ 439 (442)
+++|.++++++.+
T Consensus 407 a~aI~~vvr~i~r 419 (420)
T 4h51_A 407 AQTINDAVRNVNR 419 (420)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHhhc
Confidence 9999999987654
No 234
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.52 E-value=5.3e-13 Score=134.62 Aligned_cols=263 Identities=13% Similarity=0.107 Sum_probs=162.4
Q ss_pred CcHHHHHHHHHHHhhhCCCc-EEEEcchH-HHHHhhhhhhcc--CCCEEEeCCCchHHHHHHHHhcCCeEEEecC-----
Q 013461 152 TIDVHLDCEARIAKFLGTPD-SILYSYGL-STMFSAIPCFCK--KGDLIVADEGVHWGIQNGLYLSRSTVVYFKH----- 222 (442)
Q Consensus 152 ~~~~~~~le~~lA~~~g~e~-~i~~~sG~-~a~~~ai~a~~~--~gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~----- 222 (442)
..+...++++.+|+++|.+. ++++++|+ .++..++.++.. +||+|++....|.++..+++..|.+++.++.
T Consensus 131 ~~~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~ 210 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGD 210 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETT
T ss_pred HHHHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEeccCC
Confidence 45677889999999999764 67777788 567666666543 7888888888999999999999999887764
Q ss_pred ---CCHHHHHHHH-Hhhc-ccccc------------------------ccccccccc--CCC---cccccc--CCCCCce
Q 013461 223 ---NDMDSLRNTL-ERVT-ADNKR------------------------SNSFGVLGR--SGR---GLTEHC--GVPVDKI 266 (442)
Q Consensus 223 ---~d~~~Le~~l-~~~~-~~~~~------------------------a~~~g~~G~--~g~---g~~~~~--~v~~~~~ 266 (442)
.|+++|++.+ +... ..... .++.-++-+ .+. |..... .+. ..+
T Consensus 211 ~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~-~~~ 289 (456)
T 2z67_A 211 RVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFK-YRV 289 (456)
T ss_dssp EEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHT-SCC
T ss_pred CCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhC-CCC
Confidence 3789999988 4210 11110 122111111 111 111100 011 157
Q ss_pred eEEEEecccccc-C-CCcEEEc-CHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHH
Q 013461 267 DIVTAAMGHALA-T-EGGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRT 341 (442)
Q Consensus 267 diii~S~sK~lg-~-~GG~v~g-~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~--~~~~~~~~l~~~~~~l~~ 341 (442)
|+++.|++|.++ . .+|++++ ++++++.+...- ....+.++. .++.+++..+. ..+++.++.+++++++.+
T Consensus 290 D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~---~g~~~~~~~--~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~ 364 (456)
T 2z67_A 290 DAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSY---PGRASATPV--VNTLVSLLSMGSKNYLELVKNQKNSKKLLDE 364 (456)
T ss_dssp SEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTS---CSCBCSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCC---CCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999864 3 3488888 678888774322 212222332 22333444432 234578889999999999
Q ss_pred hhccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCE---EEe------eccCcccccCCCCCc
Q 013461 342 GLSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGV---FVV------TSKRSMLDKCRLPVG 409 (442)
Q Consensus 342 ~L~~~~---g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~GV---~v~------~~~~~~~~~~~~~~~ 409 (442)
.|.+++ |+.+..+ . +++++.+..+. . ..++.+. |.++|| -+. ++..+.. . ....
T Consensus 365 ~L~~~~~~~g~~v~~~-~-~~v~~~~~~~~----~----~~~l~~~-L~~~gi~~~rv~~~~g~f~G~~~~~--~-~~~~ 430 (456)
T 2z67_A 365 LLNDLSKKTGGKFLDV-E-SPIASCISVNS----D----PVEIAAK-LYNLRVTGPRGIKKTDHFGNCYLGT--Y-THDY 430 (456)
T ss_dssp HHHHHHHHSSCCBCCC-C-CSSEEEEECSS----C----HHHHHHH-HHHTTEESCEEECTTCHHHHTCSSC--C-SCCE
T ss_pred HHHhcccccCCEecCC-C-CeEEEEEeccc----H----HHHHHHH-HHHcCCCcceEEeecCccccccccc--c-Ccch
Confidence 998875 7666543 3 66777663111 0 1256665 445576 232 0111100 0 0145
Q ss_pred eEEEecCCCCHHHHHHHHHHHHHHH
Q 013461 410 IRLFVSAAHSEADLVKACESLKRIS 434 (442)
Q Consensus 410 iRi~~~~~~t~eei~~~i~~l~~~~ 434 (442)
+|++++..+|++|+++++++|++++
T Consensus 431 vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 431 IVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred hhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999998754
No 235
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=98.97 E-value=1.1e-07 Score=93.29 Aligned_cols=266 Identities=12% Similarity=0.106 Sum_probs=153.3
Q ss_pred hCCCc---EEEEcchHHHHHhhhhhhccC----CCEEEeCCCchHHHHHHHHhcCCeEEEecC--------CCHHHHHHH
Q 013461 167 LGTPD---SILYSYGLSTMFSAIPCFCKK----GDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRNT 231 (442)
Q Consensus 167 ~g~e~---~i~~~sG~~a~~~ai~a~~~~----gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~--------~d~~~Le~~ 231 (442)
+|.+. .++++++|.++.+++.+.+++ +|.|++++.+|.|..+++.++|.++++++. .|++++|+.
T Consensus 129 ~G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~a 208 (501)
T 3hl2_A 129 AGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAK 208 (501)
T ss_dssp TTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEEECHHHHHHH
T ss_pred cCCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccCCCHHHHHHH
Confidence 37543 466666666777777777664 499999999999999999999999888753 178999999
Q ss_pred HHhhcccccc-----------------------ccc--ccccccCCCcccccc--CC-----CCCceeEEEEeccccccC
Q 013461 232 LERVTADNKR-----------------------SNS--FGVLGRSGRGLTEHC--GV-----PVDKIDIVTAAMGHALAT 279 (442)
Q Consensus 232 l~~~~~~~~~-----------------------a~~--~g~~G~~g~g~~~~~--~v-----~~~~~diii~S~sK~lg~ 279 (442)
++++...... +|. +-++-+...|....+ .+ .....|+++.|.+|.+-.
T Consensus 209 I~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llv 288 (501)
T 3hl2_A 209 VQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMV 288 (501)
T ss_dssp HHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCC
T ss_pred HHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEeccccccee
Confidence 9887422111 222 222212222221100 00 001279999999999843
Q ss_pred -CCcEEE--cCHHhHHHHHhhCCceeccCCCcHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHhhccC---CCcee
Q 013461 280 -EGGFCT--GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDI---HGLSI 351 (442)
Q Consensus 280 -~GG~v~--g~~~~i~~l~~~~~~~~~s~s~~p~~aaaa~aal~~l~--~~~~~~~~l~~~~~~l~~~L~~~---~g~~~ 351 (442)
.||.++ -+++.++.+...- + ...+..|... ...++..+- ...+++++..++.++|++.|+++ .|-++
T Consensus 289 pIGG~ii~~~d~e~l~~~~~~y-P--Gr~S~Spsld--l~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~l 363 (501)
T 3hl2_A 289 PVGGAIIAGFNDSFIQEISKMY-P--GRASASPSLD--VLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERL 363 (501)
T ss_dssp CSSCEEEEESCHHHHHHHHHTS-C--SCBCSHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCB
T ss_pred ecCceEEEeCCHHHHHHHHHhC-C--CCCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 355443 3667777664322 1 1122334331 122222221 23568888888999999999875 24455
Q ss_pred ecCCCCCE-EEEEecCCCCCchhhHHHHHHHHHHHHHhC--CEEEeeccC-----------cccc-cCCCCCceEEEecC
Q 013461 352 ASNPESPI-VFLILEKSTGSMKNDLQLLEDIADWALKED--GVFVVTSKR-----------SMLD-KCRLPVGIRLFVSA 416 (442)
Q Consensus 352 ~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~i~~~~L~~~--GV~v~~~~~-----------~~~~-~~~~~~~iRi~~~~ 416 (442)
...+..|| +.+.+..... .......++...+..+. |--|.+... +... ...+.+.+-++...
T Consensus 364 l~~~~n~is~a~tl~~~~~---~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~ai 440 (501)
T 3hl2_A 364 LHTPHNPISLAMTLKTLDE---HRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAI 440 (501)
T ss_dssp CCCTTCSSEEEEECTTSCT---TTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCT
T ss_pred cCCCCCceeEEEecccccc---cccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHHHc
Confidence 54444554 2333322111 01112334555444432 333322111 1111 11123558999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhc
Q 013461 417 AHSEADLVKACESLKRISAVVLRD 440 (442)
Q Consensus 417 ~~t~eei~~~i~~l~~~~~~~~~~ 440 (442)
+++++|+|.++++|++++.++.++
T Consensus 441 G~~~~~v~~~~~~l~~~~~~~~~~ 464 (501)
T 3hl2_A 441 GMKMQDVDLFIKRLDRCLKAVRKE 464 (501)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999887654
No 236
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=98.96 E-value=1.2e-07 Score=93.84 Aligned_cols=281 Identities=11% Similarity=0.128 Sum_probs=154.2
Q ss_pred cHHHHHHHHHHHhhhCCCcE---EEEcchHHHHHhhhhhhccC----CCEEEeCCCchHHHHHHHHhcCCeEEEecC---
Q 013461 153 IDVHLDCEARIAKFLGTPDS---ILYSYGLSTMFSAIPCFCKK----GDLIVADEGVHWGIQNGLYLSRSTVVYFKH--- 222 (442)
Q Consensus 153 ~~~~~~le~~lA~~~g~e~~---i~~~sG~~a~~~ai~a~~~~----gd~Vi~~~~~h~s~~~~~~l~g~~v~~~~~--- 222 (442)
..+...++..+.+++|.+.. ++++++|.++.+++.+.+++ ++.|++++.+|.|+.+++.+.|..+++++.
T Consensus 97 ~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~ 176 (450)
T 3bc8_A 97 NKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLE 176 (450)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEeeec
Confidence 35556788888888886543 66777764444444444443 899999999999999999999998877753
Q ss_pred -----CCHHHHHHHHHhhcccccc-------------------------cccccccccCCCcc--cccc-----CCCCCc
Q 013461 223 -----NDMDSLRNTLERVTADNKR-------------------------SNSFGVLGRSGRGL--TEHC-----GVPVDK 265 (442)
Q Consensus 223 -----~d~~~Le~~l~~~~~~~~~-------------------------a~~~g~~G~~g~g~--~~~~-----~v~~~~ 265 (442)
-|++.|++.+++.....+. .|++.++-+...|. .++. ++....
T Consensus 177 ~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~ 256 (450)
T 3bc8_A 177 GDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGR 256 (450)
T ss_dssp TTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSC
T ss_pred CccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhcccC
Confidence 2789999999886422111 22222221111121 1110 111135
Q ss_pred eeEEEEeccccccCC-C-cEEEc-CHHhHHHHHhhCCceeccCCCcHH-HHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q 013461 266 IDIVTAAMGHALATE-G-GFCTG-SARVVDHQRLSSSGYVFSASLPPY-LASAAITAIDVLEENPDLITKLKKNTAILRT 341 (442)
Q Consensus 266 ~diii~S~sK~lg~~-G-G~v~g-~~~~i~~l~~~~~~~~~s~s~~p~-~aaaa~aal~~l~~~~~~~~~l~~~~~~l~~ 341 (442)
.|+++.|.+|.+.+. | +++.. +++.++.....-. ...+.+|. .+.+.+.++ -.+...+..++..++.+++++
T Consensus 257 AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~~---g~~s~SpsL~l~~~l~~~-G~~g~~~~i~~~~~~a~~l~~ 332 (450)
T 3bc8_A 257 IDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYP---GRASASPSLDVLITLLSL-GCSGYRKLLKERKEMFVYLST 332 (450)
T ss_dssp CCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSC---SCBCSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCccCCCchhccEEEEecCHHHHHHHHHHhh---cCCcccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999643 4 44443 6666665543211 11122343 222222111 001123344555777888888
Q ss_pred hhccCC---CceeecCCCCCEE-EEEecCCCCCchhhHHHHHHHHHHHHHh--CCEEEeec-----------cCccccc-
Q 013461 342 GLSDIH---GLSIASNPESPIV-FLILEKSTGSMKNDLQLLEDIADWALKE--DGVFVVTS-----------KRSMLDK- 403 (442)
Q Consensus 342 ~L~~~~---g~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~i~~~~L~~--~GV~v~~~-----------~~~~~~~- 403 (442)
.|++++ |..+.+.+..++- .+.+..-......| ..++.-..... .|.-+.+. .......
T Consensus 333 ~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D---~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E 409 (450)
T 3bc8_A 333 QLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKA---VTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHAD 409 (450)
T ss_dssp HHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCH---HHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSS
T ss_pred HHHhhHHhcCceecCCccCCCcceeecccccccccCC---CceeEEEecCCCCccceeeecccccchhHHHHHHcCCeee
Confidence 887776 7766643332221 12222110000112 22344332222 13333310 0001100
Q ss_pred CCCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013461 404 CRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD 440 (442)
Q Consensus 404 ~~~~~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~~ 440 (442)
....+.|-+.++...|++|+++++++|+++.++..++
T Consensus 410 ~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~~ 446 (450)
T 3bc8_A 410 NYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE 446 (450)
T ss_dssp CCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 1113458889999999999999999999987766544
No 237
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=50.66 E-value=29 Score=22.00 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=23.5
Q ss_pred ceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 409 GIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 409 ~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
++||++++ -|+.|-+++..+|-+++.++
T Consensus 3 rvrisita-rtkkeaekfaailikvfael 30 (62)
T 2gjh_A 3 RVRISITA-RTKKEAEKFAAILIKVFAEL 30 (62)
T ss_dssp EEEEEEEC-SSHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEe-cchhHHHHHHHHHHHHHHHh
Confidence 48999987 58899999999998887765
No 238
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=34.43 E-value=78 Score=21.00 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=26.0
Q ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHHhh
Q 013461 410 IRLFVSAAHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 410 iRi~~~~~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
++|.+....|+++.+++++.+-+++.+.+.
T Consensus 3 i~I~~~~Grs~eqk~~L~~~it~~~~~~lg 32 (65)
T 3ry0_A 3 IRVTLLEGRSPQEVAALGEALTAAAHETLG 32 (65)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 778887788999999999999999887664
No 239
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=34.12 E-value=76 Score=20.48 Aligned_cols=33 Identities=6% Similarity=0.003 Sum_probs=26.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013461 408 VGIRLFVSAAHSEADLVKACESLKRISAVVLRD 440 (442)
Q Consensus 408 ~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~~ 440 (442)
|.+++.+....|+++-.++.+.+-+++.+.+..
T Consensus 4 P~i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~ 36 (63)
T 2x4k_A 4 PIVNVKLLEGRSDEQLKNLVSEVTDAVEKTTGA 36 (63)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 347888777789999999999999998887643
No 240
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=29.31 E-value=93 Score=20.80 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=25.7
Q ss_pred eEEEecC---CCCHHHHHHHHHHHHHHHHHHhh
Q 013461 410 IRLFVSA---AHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 410 iRi~~~~---~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
++|.+.. ..|+++-.++++.+-+++.+.+.
T Consensus 3 i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg 35 (67)
T 3m21_A 3 INIKLVPENGGPTNEQKQQLIEGVSDLMVKVLN 35 (67)
T ss_dssp EEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 7787777 78999999999999999887664
No 241
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=28.04 E-value=1.2e+02 Score=19.60 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=24.9
Q ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHHhh
Q 013461 410 IRLFVSAAHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 410 iRi~~~~~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
++|.+....|+++-.++.+.+-+++.+.+.
T Consensus 3 i~I~~~~grs~e~k~~l~~~i~~~l~~~lg 32 (62)
T 1otf_A 3 AQLYIIEGRTDEQKETLIRQVSEAMANSLD 32 (62)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 677776677999999999999999887653
No 242
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=26.91 E-value=1.3e+02 Score=19.31 Aligned_cols=30 Identities=3% Similarity=0.027 Sum_probs=24.8
Q ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHHhh
Q 013461 410 IRLFVSAAHSEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 410 iRi~~~~~~t~eei~~~i~~l~~~~~~~~~ 439 (442)
++|.+....|+++-.++.+.|-+++.+.+.
T Consensus 3 i~i~~~~grs~eqk~~l~~~i~~~l~~~lg 32 (61)
T 2opa_A 3 VTVKMLEGRTDEQKRNLVEKVTEAVKETTG 32 (61)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 677776667999999999999999887654
No 243
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=26.62 E-value=1.1e+02 Score=20.82 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=26.0
Q ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013461 410 IRLFVSAAHSEADLVKACESLKRISAVVLRD 440 (442)
Q Consensus 410 iRi~~~~~~t~eei~~~i~~l~~~~~~~~~~ 440 (442)
|+|.+....|+|+.+++++.+-+++.+.+..
T Consensus 4 I~I~~~~grs~eqK~~L~~~it~~l~~~lg~ 34 (72)
T 3mb2_A 4 LRITMLEGRSTEQKAELARALSAAAAAAFDV 34 (72)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 6777777789999999999999998887643
No 244
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=26.28 E-value=94 Score=21.76 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=23.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHHHHHHH
Q 013461 408 VGIRLFVSAAHSEADLVKACESLKRISAVV 437 (442)
Q Consensus 408 ~~iRi~~~~~~t~eei~~~i~~l~~~~~~~ 437 (442)
.++||++++ -|+.|-+++..+|-+++.++
T Consensus 46 krvrisita-rtkkeaekfaailikvfael 74 (106)
T 1qys_A 46 KRVRISITA-RTKKEAEKFAAILIKVFAEL 74 (106)
T ss_dssp SEEEEEEEC-SSHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEe-cchhHHHHHHHHHHHHHHHh
Confidence 348999987 58899999999988887764
No 245
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=26.28 E-value=70 Score=19.99 Aligned_cols=13 Identities=8% Similarity=-0.016 Sum_probs=6.0
Q ss_pred HHHHHHHhcCcCC
Q 013461 46 VVILFLLSQKSYK 58 (442)
Q Consensus 46 ~~~~~~~~~~~~~ 58 (442)
+..+|++.+++.+
T Consensus 28 ~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 28 ALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHhhhhHh
Confidence 3444555555443
No 246
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=24.93 E-value=76 Score=19.84 Aligned_cols=12 Identities=0% Similarity=0.058 Sum_probs=5.4
Q ss_pred HHHHHHhcCcCC
Q 013461 47 VILFLLSQKSYK 58 (442)
Q Consensus 47 ~~~~~~~~~~~~ 58 (442)
..+|++.+++.+
T Consensus 28 ~~~~~~~RRRr~ 39 (44)
T 2l2t_A 28 LTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHTTCS
T ss_pred HHHHHHhhhhhh
Confidence 444444554433
No 247
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=23.39 E-value=1.6e+02 Score=19.29 Aligned_cols=30 Identities=10% Similarity=0.086 Sum_probs=25.2
Q ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013461 410 IRLFVSAAHSEADLVKACESLKRISAVVLRD 440 (442)
Q Consensus 410 iRi~~~~~~t~eei~~~i~~l~~~~~~~~~~ 440 (442)
|.|.+ ...|.|+-.++++.+-+++.+.+..
T Consensus 3 I~I~~-~grt~eqK~~L~~~it~~~~~~lg~ 32 (62)
T 3m20_A 3 LIVYG-PKLDVGKKREFVERLTSVAAEIYGM 32 (62)
T ss_dssp EEEEC-SCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEE-CCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 67777 7789999999999999998876643
No 248
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=22.30 E-value=74 Score=16.73 Aligned_cols=15 Identities=40% Similarity=0.485 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHH
Q 013461 326 PDLITKLKKNTAILR 340 (442)
Q Consensus 326 ~~~~~~l~~~~~~l~ 340 (442)
+++++++++.++.++
T Consensus 11 edlqerlrklrkklr 25 (27)
T 3twe_A 11 EDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 345556665555544
No 249
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=21.42 E-value=1.2e+02 Score=23.79 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=29.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHHHHHHHhhcc
Q 013461 408 VGIRLFVSAAHSEADLVKACESLKRISAVVLRDR 441 (442)
Q Consensus 408 ~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~~~ 441 (442)
|.+++..+...++++.+.+++.+.+++.+.+.|.
T Consensus 22 P~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKP 55 (133)
T 3fwt_A 22 PFLQTIVSVSLDDQKRANLSAAYGMICREELGKP 55 (133)
T ss_dssp EEEEEEESSCCCHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 3489999999999999999999999999887663
No 250
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=20.99 E-value=1.4e+02 Score=23.47 Aligned_cols=34 Identities=9% Similarity=0.017 Sum_probs=29.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHHHHHHHhhcc
Q 013461 408 VGIRLFVSAAHSEADLVKACESLKRISAVVLRDR 441 (442)
Q Consensus 408 ~~iRi~~~~~~t~eei~~~i~~l~~~~~~~~~~~ 441 (442)
|.+++..+...++++.+.+++.+.+++.+.+.|.
T Consensus 23 P~i~i~tnv~~~~~~~~~l~~~ls~~la~~lgKP 56 (135)
T 3t5s_A 23 PCAIVTTNADFTKDQADAFCLDMGQVLAKETGKP 56 (135)
T ss_dssp CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCSC
T ss_pred ceEEEEecCccchhccchhHHHHHHHHHHhhCCc
Confidence 4489999998999999999999999999887663
No 251
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=20.45 E-value=1.8e+02 Score=19.89 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=25.0
Q ss_pred eEEEecCCC-CHHHHHHHHHHHHHHHHHHhh
Q 013461 410 IRLFVSAAH-SEADLVKACESLKRISAVVLR 439 (442)
Q Consensus 410 iRi~~~~~~-t~eei~~~i~~l~~~~~~~~~ 439 (442)
++|.+..+- |.++-.++.+.+-+++.+.+.
T Consensus 3 I~I~l~~Grls~eqk~~L~~~l~~~l~~~lg 33 (76)
T 1gyx_A 3 IDIKCFPRELDEQQKAALAADITDVIIRHLN 33 (76)
T ss_dssp EEEEESCCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 778777666 999999999999999887654
Done!