RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013461
(442 letters)
>gnl|CDD|178417 PLN02822, PLN02822, serine palmitoyltransferase.
Length = 481
Score = 815 bits (2106), Expect = 0.0
Identities = 358/481 (74%), Positives = 394/481 (81%), Gaps = 41/481 (8%)
Query: 1 MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPP 60
MA +LN VN L RV + L++P A AVVFGVHI GHL VE LL+VVI+FLLSQKSYKPP
Sbjct: 1 MALNVLNLVNAALERVTMLLEAPLARAVVFGVHIGGHLVVEGLLIVVIVFLLSQKSYKPP 60
Query: 61 KRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYL 120
KRPLT+KEIDELCDEW PE LIPPI EEMR EPPVLESAAGPHTII+GK+VVNFASANYL
Sbjct: 61 KRPLTEKEIDELCDEWTPEPLIPPITEEMRPEPPVLESAAGPHTIINGKDVVNFASANYL 120
Query: 121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 180
GLIG+EK+ ESCTSALEKYGVGSCGPRGFYGTIDVHLDCE +IAKFLGTPDSILYSYGLS
Sbjct: 121 GLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLS 180
Query: 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNK 240
T+FS IP FCKKGD+IVADEGVHWGIQNGLYLSRST+VYFKHNDM+SLRNTLE++TA+NK
Sbjct: 181 TIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENK 240
Query: 241 R-----------------------------------------SNSFGVLGRSGRGLTEHC 259
R SNSFGVLG+SGRGL+EH
Sbjct: 241 RKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHF 300
Query: 260 GVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI 319
GVP++KIDI+TAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI
Sbjct: 301 GVPIEKIDIITAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI 360
Query: 320 DVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE 379
DVLE+NP ++ KLK+N A+L GLSDI GLSI SN SPIVFL LEKSTGS K DL LLE
Sbjct: 361 DVLEDNPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLE 420
Query: 380 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 439
IAD LKED V VV SKRS LDKCRLPVGIRLFVSA H+E+D++KA ESLKR++A VL+
Sbjct: 421 HIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASVLK 480
Query: 440 D 440
Sbjct: 481 K 481
>gnl|CDD|178766 PLN03227, PLN03227, serine palmitoyltransferase-like protein;
Provisional.
Length = 392
Score = 273 bits (700), Expect = 3e-88
Identities = 142/385 (36%), Positives = 197/385 (51%), Gaps = 59/385 (15%)
Query: 112 VNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD 171
+NFA+ ++L L ++ +L YG GSCGPRGFYGTID HL+ E +A+FLGT
Sbjct: 1 LNFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTES 60
Query: 172 SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNT 231
+ILYS G ST S + F K+GDL+V D GV+ + G+ LSR+ V +F+HNDM LR
Sbjct: 61 AILYSDGASTTSSTVAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDMKDLRRV 120
Query: 232 LERVTA----------DNKR-----------------------------------SNSFG 246
LE+V A D +R S SFG
Sbjct: 121 LEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFG 180
Query: 247 VLGRSGRGLTEHCGV-PVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSA 305
LG+SGRG EH G+ P+ +IVT ++ +A + GG GS VVDHQRLS SGY FSA
Sbjct: 181 TLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVGGMTVGSEEVVDHQRLSGSGYCFSA 240
Query: 306 SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL--SDI-------HGLSIASNPE 356
S PP+LA A TA P L+ +L + A L + L S + L I S+P
Sbjct: 241 SAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPI 300
Query: 357 SPIVFLILEKSTGSMKND-LQLLEDIADWALKEDGVFVVTSKRSM--LDKCRLPVGIRLF 413
SPI++L L + + D +L+ IA +L E GV VV++ + + P +R+
Sbjct: 301 SPIIYLRLSDQEATRRTDETLILDQIAHHSLSE-GVAVVSTGGHVKKFLQLVPPPCLRVV 359
Query: 414 VSAAHSEADLVKACESLKRISAVVL 438
+A+H+ D+ K L +L
Sbjct: 360 ANASHTREDIDKLLTVLGEAVEAIL 384
>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 259 bits (665), Expect = 5e-83
Identities = 121/384 (31%), Positives = 195/384 (50%), Gaps = 64/384 (16%)
Query: 94 PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
L+ G G++V+NF S +YLGL H +L+E+ +A+ +YGVG+ G R GT
Sbjct: 24 RALDRRQGLAIRADGRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTS 83
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
D+H++ E +A FLG ++L+S G + KKGDLI +DE H I +G+ LS
Sbjct: 84 DLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLS 143
Query: 214 RSTVVYFKHNDMDSLRNTLERV-TADNKR------------------------------- 241
R+ V FKHND+D L LE +R
Sbjct: 144 RAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGAL 203
Query: 242 -----SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRL 296
+++ GVLG +GRGL EH G+ +++DI+ +G AL + GG+ GSA ++D+ R
Sbjct: 204 LYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALIDYLRN 263
Query: 297 SSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE 356
+ ++FS +LPP +A+AA+ A+ +LEE P+ +L++ A R+ L GL + + E
Sbjct: 264 RARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLK-ALGLVLLPS-E 321
Query: 357 SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV-------VTSKRSMLDKCRLPVG 409
SPI+ +IL +++ LL E+G++V V + L
Sbjct: 322 SPIIPVILGDEERALEASRALL---------EEGIYVSAIRPPTVPKGTARL-------- 364
Query: 410 IRLFVSAAHSEADLVKACESLKRI 433
R+ ++AAH+E D+ + E+L +
Sbjct: 365 -RITLTAAHTEEDIDRLAEALSEV 387
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life.
Length = 349
Score = 235 bits (602), Expect = 5e-74
Identities = 111/367 (30%), Positives = 180/367 (49%), Gaps = 61/367 (16%)
Query: 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168
K+V+NF S +YLGL H +++E+ AL+KYGVG+ G R GT D+H + E +A+F G
Sbjct: 1 KKVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHG 60
Query: 169 TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSL 228
++++S G + + KGDLI++D H I +G+ LS + FKHNDM+ L
Sbjct: 61 KEAALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMEDL 120
Query: 229 RNTLERVTADNKR------------------------------------SNSFGVLGRSG 252
L + ++S GV G G
Sbjct: 121 EKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHG 180
Query: 253 RGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLA 312
RG+ E G+ D +DI+ +G A GG+ GS ++D+ R + G++FS SLPP +A
Sbjct: 181 RGVEEFGGLT-DDVDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARGFIFSTSLPPAVA 239
Query: 313 SAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMK 372
+AA+ A++VL+ P+ +L++N LR GL ++ G + +P I LI + ++
Sbjct: 240 AAALAALEVLQGGPERRERLQENVRYLRRGLKEL-GFPVGGSPSHIIPPLIGDDPAKAVA 298
Query: 373 NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVG------IRLFVSAAHSEADLVKA 426
+D AL E G++V R P +R+ +SAAH++ D+ +
Sbjct: 299 --------FSD-ALLERGIYVQA--------IRYPTVPRGTARLRISLSAAHTKEDIDRL 341
Query: 427 CESLKRI 433
E+LK +
Sbjct: 342 LEALKEV 348
>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
Provisional.
Length = 397
Score = 214 bits (548), Expect = 2e-65
Identities = 117/384 (30%), Positives = 185/384 (48%), Gaps = 65/384 (16%)
Query: 95 VLESAAGPH-TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
V+ S G T+ GKEV+NF + NYLGL H +L+ + +AL+ +G G R GT
Sbjct: 27 VITSPQGADITVADGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQ 86
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
D+H + E ++AKFLGT D+ILYS K D I++D H I +G+ L
Sbjct: 87 DLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGVRLC 146
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKR-------------------------------- 241
++ + +NDM L L+ R
Sbjct: 147 KAKRYRYANNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDAL 206
Query: 242 -----SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSARVVDHQR 295
S++ G +G +GRG EH GV +D++DI+T +G AL GG+ G V+D R
Sbjct: 207 VMVDDSHAVGFVGENGRGTVEHFGV-MDRVDIITGTLGKALGGASGGYTAGRKEVIDWLR 265
Query: 296 LSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP 355
S Y+FS SL P + +A+I +++LEE+ +L +L +N R G++ G ++
Sbjct: 266 QRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAA-GFTLG-PG 323
Query: 356 ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV------VTSKRSMLDKCRLPVG 409
E PI+ ++L D +L ++ AD L E+GV+V V K + R
Sbjct: 324 EHPIIPVML--------GDAKLAQEFAD-RLLEEGVYVIGFSFPVVPK----GQAR---- 366
Query: 410 IRLFVSAAHSEADLVKACESLKRI 433
IR +SAAH++ L +A ++ +++
Sbjct: 367 IRTQMSAAHTKEQLDRAIDAFEKV 390
>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase.
7-keto-8-aminopelargonic acid synthetase is an alternate
name. This model represents 8-amino-7-oxononanoate
synthase, the BioF protein of biotin biosynthesis. This
model is based on a careful phylogenetic analysis to
separate members of this family from
2-amino-3-ketobutyrate and other related pyridoxal
phosphate-dependent enzymes. In several species,
including Staphylococcus and Coxiella, a candidate
8-amino-7-oxononanoate synthase is confirmed by location
in the midst of a biotin biosynthesis operon but scores
below the trusted cutoff of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 360
Score = 206 bits (527), Expect = 7e-63
Identities = 111/381 (29%), Positives = 181/381 (47%), Gaps = 64/381 (16%)
Query: 94 PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
L+ GP + G+ ++NF+S +YLGL H +++++ E+YG GS R G
Sbjct: 1 RPLDRGPGPEVVRDGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNS 60
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
+H + E +A++ GT ++L+S G I KGDLI++D H + +G LS
Sbjct: 61 PLHEELEEELAEWKGTEAALLFSSGYLANVGVISALVGKGDLILSDALNHASLIDGCRLS 120
Query: 214 RSTVVYFKHNDMDSLRNTLER---------VT----------AD-------NKRSNSF-- 245
+ V ++HND++ L LE+ VT A +R ++
Sbjct: 121 GARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLM 180
Query: 246 -------GVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSS 298
GVLG GRG EH G+ + +DI + AL + G + GS ++D+ +
Sbjct: 181 VDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYGAYVAGSQALIDYLINRA 240
Query: 299 SGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP 358
+FS +LPP +A+AA+ A+++++E P KL A LR GL G ++ +P
Sbjct: 241 RTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEA-LGFTL-MPSCTP 298
Query: 359 IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV-----TSKRSMLDKCRLPVG---I 410
IV +I+ G + L L E L++ G+FV T +P G +
Sbjct: 299 IVPVII----GDNASALALAE-----ELQQQGIFVGAIRPPT----------VPAGTSRL 339
Query: 411 RLFVSAAHSEADLVKACESLK 431
RL +SAAH+ D+ + E+LK
Sbjct: 340 RLTLSAAHTPGDIDRLAEALK 360
>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.
Length = 385
Score = 194 bits (496), Expect = 6e-58
Identities = 108/384 (28%), Positives = 170/384 (44%), Gaps = 67/384 (17%)
Query: 94 PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
E AG ++ G+ ++NFAS +YLGL H +L+ + A +YG GS G R G
Sbjct: 24 RPREGGAGRWLVVDGRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNS 83
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
H E +A++ G ++L+S G + + + KGDLIV+D+ H + +G LS
Sbjct: 84 PAHEALEEELAEWFGAERALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLIDGARLS 143
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADN-------------------------KRSN----- 243
R+ V + HND+D+L L + A +R
Sbjct: 144 RARVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLV 203
Query: 244 ----SFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSS 299
GVLG GRGL G+ + I+ +G AL + G GS ++D+ +
Sbjct: 204 DEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSGAAVLGSETLIDYLINRAR 263
Query: 300 GYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPI 359
++F+ +LPP A+AA A+ +L P+ +L A LR GL G + + +S I
Sbjct: 264 PFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRA-LGFQL-MDSQSAI 321
Query: 360 VFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV-------VTSKRSMLDKCRLPVG--- 409
LI+ G + L L AL+E G +V V P G
Sbjct: 322 QPLIV----GDNERALALAA-----ALQEQGFWVGAIRPPTV------------PAGTSR 360
Query: 410 IRLFVSAAHSEADLVKACESLKRI 433
+R+ ++AAH+EAD+ + E+L
Sbjct: 361 LRITLTAAHTEADIDRLLEALAEA 384
>gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent
acyltransferase, putative. This model represents an
enzyme subfamily related to three known enzymes; it
appears closest to glycine C-acteyltransferase, shows no
overlap with it in species distribution, and may share
that function. The three closely related enzymes are
glycine C-acetyltransferase (2-amino-3-ketobutyrate
coenzyme A ligase), 5-aminolevulinic acid synthase, and
8-amino-7-oxononanoate synthase. All transfer the
R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from
coenzyme A to an amino acid (Gly, Gly, Ala,
respectively), with release of CO2 for the latter two
reactions.
Length = 385
Score = 189 bits (482), Expect = 7e-56
Identities = 104/382 (27%), Positives = 185/382 (48%), Gaps = 59/382 (15%)
Query: 92 EPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG 151
VLESA GP ++GKEV+N +S NYLG H +L E+ A+++YGVG+ R G
Sbjct: 16 SIRVLESAQGPRVRVNGKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAG 75
Query: 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY 211
T+ +H + E ++AKF T ++++ G +T + +KGD++++DE H I +GL
Sbjct: 76 TLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGLR 135
Query: 212 LSRSTVVYFKHNDMDSLRNTLERVTADNKR------------------------------ 241
L+++T +KH DMD L L + K+
Sbjct: 136 LTKATKKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAV 195
Query: 242 -----SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRL 296
++ GV+G +GRG H G+ DK+DI + A+ GG+ G ++++ +
Sbjct: 196 TYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVVGGYAAGHKELIEYLKN 254
Query: 297 SSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE 356
+ ++FS + PP + +A A+D L+ +P+L+ +L NT + GL + G E
Sbjct: 255 RARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKL-GYDT-GGSE 312
Query: 357 SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV-----TSKRSMLDKCRLPVGIR 411
+PI +++ D + ++ + L ++G+F T R R IR
Sbjct: 313 TPITPVVI--------GDEKAAQEFSR-RLFDEGIFAQSIVFPTVPR---GTAR----IR 356
Query: 412 LFVSAAHSEADLVKACESLKRI 433
+A H++ DL +A ++ +++
Sbjct: 357 NIPTAEHTKDDLDQALDAYEKV 378
>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase.
This model represents a narrowly defined clade of animal
and bacterial (almost exclusively Proteobacterial)
2-amino-3-ketobutyrate--CoA ligase. This enzyme can act
in threonine catabolism. The closest homolog from
Bacillus subtilis, and sequences like it, may be
functionally equivalent but were not included in the
model because of difficulty in finding reports of
function [Energy metabolism, Amino acids and amines].
Length = 393
Score = 170 bits (432), Expect = 1e-48
Identities = 118/392 (30%), Positives = 177/392 (45%), Gaps = 81/392 (20%)
Query: 95 VLESAAGPH-TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
++ S G + G+EV+NF + NYLGL H L+++ AL+++G G R GT
Sbjct: 23 IITSPQGADIRVADGREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQ 82
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKG----------DLIVADEGVH 203
D+H + EA+IA FLGT D+ILY+ CF G D I++D H
Sbjct: 83 DIHKELEAKIAAFLGTEDTILYA----------SCFDANGGLFETLLGAEDAIISDALNH 132
Query: 204 WGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKR---------------------- 241
I +G+ L ++ + +NDM L L+ A R
Sbjct: 133 ASIIDGVRLCKAKRYRYANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEI 192
Query: 242 ---------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCT 285
++ G LG +GRG E CGV + ++DI+T +G AL GGF T
Sbjct: 193 CDLADKYDALVMVDECHATGFLGPTGRGSHELCGV-MGRVDIITGTLGKALGGASGGFTT 251
Query: 286 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS- 344
VV+ R S Y+FS SLPP + A+I +++LE + +L +L NT R +
Sbjct: 252 ARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEA 311
Query: 345 ---DIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML 401
DI A +P P+ M D L + A L+E G++V ++
Sbjct: 312 AGFDIKP---ADHPIIPV-----------MLYDAVLAQRFARRLLEE-GIYVTGFFYPVV 356
Query: 402 DKCRLPVGIRLFVSAAHSEADLVKACESLKRI 433
K + IR+ +SAAH+E L +A E+ RI
Sbjct: 357 PKGQ--ARIRVQISAAHTEEQLDRAVEAFTRI 386
>gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase.
Length = 489
Score = 135 bits (341), Expect = 6e-35
Identities = 92/380 (24%), Positives = 164/380 (43%), Gaps = 71/380 (18%)
Query: 113 NFASANYLGLIGHEKLLESCT----SALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168
N S NYLG + E CT +L+KY +C R GT +H + E +A+F+G
Sbjct: 104 NLGSYNYLGFAAAD---EYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVG 160
Query: 169 TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSL 228
P +I++ G +T + IP KG LI++D H I NG S +T+ F+HN L
Sbjct: 161 KPAAIVFGMGYATNSTIIPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHL 220
Query: 229 RNTLERVTAD---------NK-----------------------------------RSNS 244
L A+ K ++S
Sbjct: 221 EEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHS 280
Query: 245 FGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFS 304
G +G++GRG+ E GV +DI+ + + GG+ GS ++ + + + ++++
Sbjct: 281 IGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKRTCPAHLYA 340
Query: 305 ASLPPYLASAAITAIDVL--EENPDL----ITKLKKNTAILRTGLSDIHGLSIASNPESP 358
S+ P I+AI V+ E+ + + ++++N+ R+ L + G + + +SP
Sbjct: 341 TSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFEVLGDNDSP 399
Query: 359 IVFLILEKSTGSMKNDLQLLEDIADWALKED-GVFVVTSKRSMLDKCRLPVGIRLFVSAA 417
++ ++L + + LK++ V VV + L R R+ +SA+
Sbjct: 400 VMPIMLYNPAK--------IPAFSRECLKQNVAVVVVGFPATPLLLAR----ARICISAS 447
Query: 418 HSEADLVKACESLKRISAVV 437
HS DL+KA E + + +V
Sbjct: 448 HSREDLIKALEVISEVGDLV 467
>gnl|CDD|233587 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase. This
model represents 5-aminolevulinic acid synthase, an
enzyme for one of two routes to the heme precursor
5-aminolevulinate. The protein is a pyridoxal
phosphate-dependent enzyme related to
2-amino-3-ketobutyrate CoA tranferase and
8-amino-7-oxononanoate synthase. This enzyme appears
restricted to the alpha Proteobacteria and mitochondrial
derivatives [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 402
Score = 127 bits (320), Expect = 1e-32
Identities = 84/328 (25%), Positives = 149/328 (45%), Gaps = 48/328 (14%)
Query: 103 HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEAR 162
H K+V + S +YLG+ H ++L++ L+KYG G+ G R GT H++ EA
Sbjct: 39 HRPDGAKDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAE 98
Query: 163 IAKFLGTPDSILYSYGLSTMFSAIPCFCKK--GDLIVADEGVHWGIQNGLYLSRSTVVYF 220
+A G +++++ G + + K G +I +DE H + G+ S + F
Sbjct: 99 LADLHGKESALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIF 158
Query: 221 KHNDMDSLRNTLERVTADNKRSNSF----------------------------------- 245
+HND+ L L+ V + + +F
Sbjct: 159 RHNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAV 218
Query: 246 GVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSA 305
G+ G G G+ E G+ + +IDI+ + A GG+ S +++D R + G++F+
Sbjct: 219 GLYGPRGGGIAERDGL-MHRIDIIEGTLAKAFGVVGGYIAASRKLIDAIRSYAPGFIFTT 277
Query: 306 SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE 365
SLPP +A+ A +I L+E+ DL ++N L+ L + G+ + NP S IV +I+
Sbjct: 278 SLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL-GIPVIPNP-SHIVPVII- 334
Query: 366 KSTGSMKNDLQLLEDIADWALKEDGVFV 393
D L + ++D L + G++V
Sbjct: 335 -------GDAALCKKVSDLLLNKHGIYV 355
>gnl|CDD|236370 PRK09064, PRK09064, 5-aminolevulinate synthase; Validated.
Length = 407
Score = 122 bits (308), Expect = 8e-31
Identities = 87/329 (26%), Positives = 149/329 (45%), Gaps = 58/329 (17%)
Query: 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166
+EV + S +YLG+ H K++E+ AL++ G G+ G R GT H++ E +A
Sbjct: 44 GEREVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADL 103
Query: 167 LGTPDSILYSYG-------LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVY 219
G +++++ G LST+ IP +I +DE H + G+ SR
Sbjct: 104 HGKEAALVFTSGYVSNDATLSTLAKLIP-----DCVIFSDELNHASMIEGIRRSRCEKHI 158
Query: 220 FKHNDMDSLRNTLERVTADN--------------------------KRSNSF-------- 245
F+HND+ L L D + N+
Sbjct: 159 FRHNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHA 218
Query: 246 -GVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFS 304
G+ G G G+ E G+ +D+IDI+ + A GG+ GSA +VD R + G++F+
Sbjct: 219 VGMYGPRGGGIAERDGL-MDRIDIIEGTLAKAFGVMGGYIAGSAALVDAVRSYAPGFIFT 277
Query: 305 ASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL 364
SLPP +A+AA+ +I L+E+ + + ++ A L+ L G+ + N S IV +++
Sbjct: 278 TSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA-GIPVMPNE-SHIVPVMV 335
Query: 365 EKSTGSMKNDLQLLEDIADWALKEDGVFV 393
D + + +D L+E G++V
Sbjct: 336 --------GDPEKCKKASDMLLEEHGIYV 356
>gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional.
Length = 406
Score = 107 bits (268), Expect = 2e-25
Identities = 95/346 (27%), Positives = 149/346 (43%), Gaps = 64/346 (18%)
Query: 96 LESAAG--PHTIISG----KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGF 149
LE AG P G +EV + S +YLG+ H +L + AL+ G G+ G R
Sbjct: 26 LERQAGAFPRATHHGPDGPREVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNI 85
Query: 150 YGTIDVHLDCEARIAKFLGTPDSILYSYG-------LSTMFSAIPCFCKKGDLIVADEGV 202
GT H+ EA +A G ++L++ G LST+ S +P G +I++DE
Sbjct: 86 SGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAALSTLGSRLP-----GCVILSDELN 140
Query: 203 HWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRSNSF----------------- 245
H + G+ SR+ F+HND L L + + +F
Sbjct: 141 HASMIEGIRHSRAEKRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEIC 200
Query: 246 ------------------GVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGS 287
G+ G G G+ E G+ D++ I+ + A GG+ TGS
Sbjct: 201 DVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGL-ADRLTIIEGTLAKAFGVMGGYITGS 259
Query: 288 ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH 347
A + D R +SG++F+ SLPP +A+ A+ ++ L+ + + + A LR L D
Sbjct: 260 AALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARL-DKA 318
Query: 348 GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 393
G+ NP S IV + M D L + I+D L G++V
Sbjct: 319 GIPHLPNP-SHIVPV--------MVGDPVLCKQISDELLDRYGIYV 355
>gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional.
Length = 410
Score = 104 bits (260), Expect = 2e-24
Identities = 83/338 (24%), Positives = 145/338 (42%), Gaps = 52/338 (15%)
Query: 97 ESAAGPHTIISG----KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGT 152
E+ P G + V + S +YLG+ H ++ + AL++YG G+ G R GT
Sbjct: 30 EAGRFPRARDHGPDGPRRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGT 89
Query: 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKK--GDLIVADEGVHWGIQNGL 210
H+ E +A G ++L++ G + +A+ K G +I++D H + G+
Sbjct: 90 SHPHVLLERELADLHGKESALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIEGI 149
Query: 211 YLSRSTVVYFKHNDMDSLRNTLERVTADN--------------------------KRSNS 244
S + F+HND+ L L V D R N+
Sbjct: 150 RRSGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNA 209
Query: 245 F---------GVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQR 295
G+ G G G+ E G+ +D+ID++ + A GG+ SA ++D R
Sbjct: 210 LTYVDEVHAVGLYGARGGGIAERDGL-MDRIDMIQGTLAKAFGCLGGYIAASADLIDFVR 268
Query: 296 LSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP 355
+ G++F+ +LPP +A+ A AI L+ + + A L+ L+ G+ + +P
Sbjct: 269 SFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN-GIPVMPSP 327
Query: 356 ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 393
S IV + M D L + I+D + E G+++
Sbjct: 328 -SHIVPV--------MVGDPTLCKAISDRLMSEHGIYI 356
>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional.
Length = 407
Score = 92.4 bits (230), Expect = 2e-20
Identities = 87/367 (23%), Positives = 147/367 (40%), Gaps = 64/367 (17%)
Query: 106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAK 165
G + + S +YL L GH ++++ +AL++ G F E ++A
Sbjct: 51 TPGPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAA 110
Query: 166 FLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDM 225
F G +L G + + + D H + G+ + + F+HND+
Sbjct: 111 FTGFESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRHNDV 170
Query: 226 DSLRNTLER-----VTADN---------------------------KRSNSFGVLGRSGR 253
D LR +ER + D+ S+S G G G
Sbjct: 171 DHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGA 230
Query: 254 GLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLAS 313
GL G+ ++ +TA++ A A G T + ++ S +FS++L P+ +
Sbjct: 231 GLVAELGL-TSRVHFITASLAKAFAGRAGIITCPRELAEYVPFVSYPAIFSSTLLPHEIA 289
Query: 314 AAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKN 373
++V+E D +L N LR GLS++ G +I S ES I+ L TGS +N
Sbjct: 290 GLEATLEVIESADDRRARLHANARFLREGLSEL-GYNIRS--ESQIIAL----ETGSERN 342
Query: 374 DLQLLEDIADWALKEDGVF------VVTSK-RSMLDKCRLPVGIRLFVSAAHSEADL--- 423
++L D AL+E VF T K R++ IRL ++A + +DL
Sbjct: 343 -TEVLRD----ALEERNVFGAVFCAPATPKNRNL---------IRLSLNADLTASDLDRV 388
Query: 424 VKACESL 430
++ C
Sbjct: 389 LEVCREA 395
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 83.5 bits (207), Expect = 1e-17
Identities = 74/379 (19%), Positives = 123/379 (32%), Gaps = 79/379 (20%)
Query: 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168
+ +N S YLG L + A + + G R YG D + +AKFLG
Sbjct: 1 TDKINLGSNEYLGD---SGTLPAVAKAEKD--ALAGGTRNLYGPTDGLPELREALAKFLG 55
Query: 169 TP--------DSILYSYGLSTMFSAIP-CFCK-KGDLIVADEGVHWGIQNGLYLSRSTVV 218
++++ G A+ GD I+ + L+ VV
Sbjct: 56 RSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVV 115
Query: 219 YFK-------HNDMDSLRNTLERVTADNK----------------------------RSN 243
+ H D D+L L+ T NK N
Sbjct: 116 RYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHN 175
Query: 244 SF---------GVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVV 291
V G S + + +V + A G G+ G+A V+
Sbjct: 176 ILLLVDEAYAGFVFG-SLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAVI 234
Query: 292 DHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSI 351
R + + S L A+A + V E ++ ++K+ LR GL GLS+
Sbjct: 235 SQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAA-GLSV 293
Query: 352 ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIR 411
++ L + L L + + L+E GV+V P +R
Sbjct: 294 LP-SQAGFFLLTG----LDPEAALALAQVL----LEEVGVYVTPGS-----SFGGPGWLR 339
Query: 412 LFVSAAHSEADLVKACESL 430
+ V A +E +L + E++
Sbjct: 340 ITV-AGGTEEELEELLEAI 357
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 50.6 bits (122), Expect = 9e-07
Identities = 47/205 (22%), Positives = 74/205 (36%), Gaps = 48/205 (23%)
Query: 248 LGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSS--G 300
GR+G+ EH GV DIVT +G L GG G ++D G
Sbjct: 237 FGRTGKMFAFEHFGVE---PDIVT--LGKGLG--GGLPLGAVLGREEIMDAFPAGPGLHG 289
Query: 301 YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH------------G 348
F + P +AA+ ++VLEE L+ + LR L ++ G
Sbjct: 290 GTFGGN--PLACAAALAVLEVLEE-EGLLENAAELGEYLRERLRELAEKHPLVGDVRGRG 346
Query: 349 LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPV 408
L I + L K + D +L I A E G+ + S ++
Sbjct: 347 LMIG---------IELVKDRATKPPDKELAAKIIK-AALERGLLLRPSGGNV-------- 388
Query: 409 GIRLFVSAAHSEADLVKACESLKRI 433
IRL +E ++ + ++L
Sbjct: 389 -IRLLPPLIITEEEIDEGLDALDEA 412
>gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional.
Length = 402
Score = 49.6 bits (119), Expect = 2e-06
Identities = 79/386 (20%), Positives = 135/386 (34%), Gaps = 66/386 (17%)
Query: 94 PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGV-GSCGPRGFYGT 152
V E T+ G VNF S +YLGL H ++E AL++ G R +
Sbjct: 31 TVGEREGILITLADGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRS 90
Query: 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCK------KGDLIVADEGVHWGI 206
+ D E +++ G + ++ + +P +V D+ H +
Sbjct: 91 -QILKDLEEALSELFG-ASVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASL 148
Query: 207 QN--GLYLSRSTVVYFKHNDMDSLRN---TLERV------------TADNKR-------- 241
G+ + V HND+D+L + T + V A K
Sbjct: 149 NILKGICADETEVETIDHNDLDALEDICKTNKTVAYVADGVYSMGGIAPVKELLRLQEKY 208
Query: 242 --------SNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALATEGGFCT-GSARVV 291
++ + G++G G +++ I+ A++G A GG G A +
Sbjct: 209 GLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASGGVIMLGDAEQI 268
Query: 292 DHQRLSSSGYVFSASL--PPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGL 349
+ + FS SL A A I + EE L KL+ N A L D
Sbjct: 269 ELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIA-----LFDSLIP 323
Query: 350 SIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWA--LKEDGVFVVTSKRSMLDKCRLP 407
+ S PI + + + A L + G + ++ K R
Sbjct: 324 TEQSGSFLPIRLIYIGDE-----------DTAIKAAKQLLDRGFYTSPVFFPVVAKGR-- 370
Query: 408 VGIRLFVSAAHSEADLVKACESLKRI 433
G+R+ A+H+ ++ + C LK I
Sbjct: 371 AGLRIMFRASHTNDEIKRLCSLLKEI 396
>gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase.
Length = 476
Score = 47.7 bits (113), Expect = 8e-06
Identities = 91/415 (21%), Positives = 160/415 (38%), Gaps = 93/415 (22%)
Query: 75 EWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTS 134
+W+ + IP EE+ + E G K+++ F+ +YLGL H + + +
Sbjct: 75 KWLHD--IPSNGEEIFSGDALAEERKG-----RFKKLLLFSGNDYLGLSSHPTISNAAAN 127
Query: 135 ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGD 194
A ++YG+G G G H E+ +A D ++ G + +A+
Sbjct: 128 AAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFAANMAAMVAIGSVAS 187
Query: 195 LIVA------DEGV--------HWGIQNGLYLSR----STVVYFKHNDMDSLRN-----T 231
L+ A +E V H I +G+ L+ V ++H DM L +
Sbjct: 188 LLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDMYHLNSLLSSCK 247
Query: 232 LER--VTADN---------------KRSNSFGVL------------GRSGRGLTEHCGVP 262
++R V D+ + +G L G +G G+ E
Sbjct: 248 MKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCE 307
Query: 263 VDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSG--YVFSASLPPYLASAAITAID 320
D +D+ + A GGF S + Q + S G ++FS ++P +A+AA A+
Sbjct: 308 AD-VDLCVGTLSKAAGCHGGFIACSKKW--KQLIQSRGRSFIFSTAIPVPMAAAAYAAVV 364
Query: 321 VLEENPDLITKLKKNTAILR--TGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLL 378
V + + + AI + G+ I+ SPI+ L++ ++K LL
Sbjct: 365 VARK------EKWRRKAIWERVKEFKALSGVDIS----SPIISLVVGNQEKALKASRYLL 414
Query: 379 EDIADWALKEDGVFVVTSKRSML---DKCRLPVGIRLFVSAAHSEADLVKACESL 430
+ F V + R + CRL R+ +SAAH+ D+ K +L
Sbjct: 415 KS----------GFHVMAIRPPTVPPNSCRL----RVTLSAAHTTEDVKKLITAL 455
>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
metabolism].
Length = 432
Score = 46.8 bits (112), Expect = 1e-05
Identities = 39/197 (19%), Positives = 71/197 (36%), Gaps = 40/197 (20%)
Query: 253 RGLTEHCGVPVDKIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSSGYVFSA-SL 307
G + GV + D+ T +G + GG G A +++ L+ G V+ A +L
Sbjct: 251 GGAQGYYGV---EPDLTT--LGKIIG--GGLPIGAFGGRAEIMEQ--LAPLGPVYQAGTL 301
Query: 308 P--PYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI---HGL-----SIASNPES 357
P +A + ++ L + +L L GL HG+ + S
Sbjct: 302 SGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFG- 360
Query: 358 PIVFLILEKSTGS--MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS 415
I F + ++D++ L GV++ S+ F+S
Sbjct: 361 -IFFTEEGVRNYADAKRSDVERFAKFFHHLLNR-GVYLAPSQFEA-----------GFLS 407
Query: 416 AAHSEADLVKACESLKR 432
AH+E D+ + E+
Sbjct: 408 TAHTEEDIDRTLEAADE 424
>gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional.
Length = 370
Score = 40.9 bits (96), Expect = 0.001
Identities = 51/223 (22%), Positives = 81/223 (36%), Gaps = 47/223 (21%)
Query: 141 VGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFC----KKGDLI 196
+G G R G + D E +IA F G P++ + G + A C D +
Sbjct: 43 LGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSG----YMANLGLCAHLSSVTDYV 98
Query: 197 VADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRN-------------------------- 230
+ DE VH + L + F+HND+D L +
Sbjct: 99 LWDEQVHISVVYSLSVISGWHQSFRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGT 158
Query: 231 --TLERVTADNKR---------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT 279
LE++ A +K+ +++ G+ G G+G G + V AL +
Sbjct: 159 LAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLG--YENFYAVLVTYSKALGS 216
Query: 280 EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL 322
G S+ V L+S +S LPP+L + A D L
Sbjct: 217 MGAALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFL 259
>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase. This
enzyme, glutamate-1-semialdehyde-2,1-aminomutase
(glutamate-1-semialdehyde aminotransferase, GSA
aminotransferase), contains a pyridoxal phosphate
attached at a Lys residue at position 283 of the seed
alignment. It is in the family of class III
aminotransferases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 423
Score = 37.3 bits (87), Expect = 0.014
Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 34/163 (20%)
Query: 286 GSARVVDHQRLSSSGYVFSA---SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG 342
G +++ L+ G V+ A S P +A + + +L+E + T+L + L G
Sbjct: 276 GRREIMER--LAPEGPVYQAGTLSGNPLAMAAGLATLKLLDE-EGVYTELDELAKRLAEG 332
Query: 343 LSDI---HGLSIA-SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR 398
LS++ G+ + S E+ + + AD A K D
Sbjct: 333 LSEVLEDTGIPHTVNRVGSMFSLFFTEEE----------VTNYAD-AKKSDTELFAKFFH 381
Query: 399 SMLDKCRLPVGIRL--------FVSAAHSEADLVKACESLKRI 433
MLDK G+ L F+SAAH+E D+ E+ + +
Sbjct: 382 EMLDK-----GVFLPPSQFEACFLSAAHTEEDIENTIEAAEEV 419
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 35.7 bits (83), Expect = 0.043
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 314 AAITAIDVLEENPDL---ITKLKKNTAILRTGLSDIHGLSIASNPE-SPIVFLILEKSTG 369
AAI A++ + + + + ++ +L L++I GLS+ PE + +F + +
Sbjct: 277 AAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELLD 336
Query: 370 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACES 429
S E+ A L+E GV VV S + +RL S A SE L +A
Sbjct: 337 S--------EEFAKKLLEEAGVAVVPG--SGFGEPPGEGYVRL--SLATSEETLEEALRR 384
Query: 430 LKR 432
L R
Sbjct: 385 LAR 387
>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent
enzyme. This family includes enzymes involved in
cysteine and methionine metabolism. The following are
members: Cystathionine gamma-lyase, Cystathionine
gamma-synthase, Cystathionine beta-lyase, Methionine
gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine
sulfhydrylase All of these members participate is
slightly different reactions. All these enzymes use PLP
(pyridoxal-5'-phosphate) as a cofactor.
Length = 382
Score = 34.1 bits (79), Expect = 0.13
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL--YLSRS-- 215
E RIA G ++ +S G++ +F+A+ K GD +VA + ++ G L R
Sbjct: 58 EERIAALEGGEAALAFSSGMAAIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFGI 117
Query: 216 TVVYFKHNDMDSLRNTL 232
V + +D+D+L +
Sbjct: 118 EVTFVDPSDLDALEAAI 134
>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine
gamma-synthases [Amino acid transport and metabolism].
Length = 396
Score = 34.1 bits (79), Expect = 0.15
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVA 198
E +A+ G D+ +S G++ + +A+ K GD ++
Sbjct: 69 EEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLL 107
>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 426
Score = 33.5 bits (78), Expect = 0.24
Identities = 42/159 (26%), Positives = 63/159 (39%), Gaps = 46/159 (28%)
Query: 286 GSARVVDHQRLSSSGYVFSA---SLPPYLASAA-ITAIDVLEENPDLITKLKKNTAILRT 341
G +++ L+ G V+ A S P LA AA + + +L+E P +L+ T L
Sbjct: 278 GRREIMEQ--LAPLGPVYQAGTLSGNP-LAMAAGLATLKLLKE-PGFYEELEALTKRLAE 333
Query: 342 GLSDI---HGLSIASNPESPIVFLILEKSTGSMKNDLQLL------EDIADWALKEDGVF 392
GL + G+ + N GSM L + AD A K D
Sbjct: 334 GLKEAAKKAGIPLTVN------------RVGSM---FGLFFTDEPVTNYAD-AKKSDTER 377
Query: 393 VVTSKRSMLDKCRLPVGIRL--------FVSAAHSEADL 423
+MLD+ G+ L FVSAAH++ D+
Sbjct: 378 FARFFHAMLDE-----GVYLAPSQFEAGFVSAAHTDEDI 411
>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine
family. This family of proteins, for which ornithine
aminotransferases form an outgroup, consists mostly of
proteins designated acetylornithine aminotransferase.
However, the two very closely related members from E.
coli are assigned different enzymatic activities. One is
acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an
enzyme of arginine biosynthesis, while another is
succinylornithine aminotransferase, an enzyme of the
arginine succinyltransferase pathway, an
ammonia-generating pathway of arginine catabolism (See
MEDLINE:98361920). Members of this family may also act
on ornithine, like ornithine aminotransferase (EC
2.6.1.13) (see MEDLINE:90337349) and on
succinyldiaminopimelate, like
N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17,
DapC, an enzyme of lysine biosynthesis) (see
MEDLINE:99175097).
Length = 379
Score = 32.0 bits (73), Expect = 0.68
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 248 LGRSGRGLT-EHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSAS 306
+GR+G+ EH G+ + DI+T A G G V + G F +
Sbjct: 216 IGRTGKFFAYEHYGI---EPDIITLAKGLGGGVPIGATLAKEEVAEAFTPGDHGSTFGGN 272
Query: 307 LPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI 346
P +AA+ ++V+E+ L+ +K+ + L ++
Sbjct: 273 --PLACAAALAVLEVIEK-ERLLENVKEKGDYFKERLEEL 309
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 31.7 bits (72), Expect = 0.91
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 15/92 (16%)
Query: 248 LGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSSGYV 302
LGR+G+ EH GV + DI+T +G L GG G A ++D L +
Sbjct: 250 LGRTGKWFAIEHFGV---EPDIIT--LGKPLG--GGLPISATIGRAEIMD--SLPPLAHA 300
Query: 303 FSASLPPYLASAAITAIDVLEENPDLITKLKK 334
F+ S P ++AA+ I+ +EE +L+ + +K
Sbjct: 301 FTLSGNPVASAAALAVIEEIEEK-NLLKRAEK 331
>gnl|CDD|235182 PRK03968, PRK03968, DNA primase large subunit; Validated.
Length = 399
Score = 31.2 bits (71), Expect = 1.0
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 47 VILFLLSQKSY-----KPPKRPLTKKEIDELCDEWVPESLIPPIIEEM--RCEPPVLESA 99
+ + L S SY PP+R + + D D + E I P+I E RC PP+ E
Sbjct: 268 ITVLLTSFLSYARLCPNPPRRDVKVSDCDP--DLRIIEEEILPLIIEAANRCSPPLFEDQ 325
Query: 100 AGPHTII 106
P I
Sbjct: 326 --PQEIK 330
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 30.6 bits (70), Expect = 1.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 293 HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLI 329
++ LSSS Y+F + P + S+ I LE + + I
Sbjct: 96 YRLLSSSKYLFIQLIFPVIYSSFILVYGFLERDDETI 132
>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD corresponds to ornithine decarboxylase (ODC),
arginine decarboxylase (ADC) and lysine decarboxylase
(LDC). ODC is a dodecamer composed of six homodimers and
catalyzes the decarboxylation of tryptophan. ADC
catalyzes the decarboxylation of arginine and LDC
catalyzes the decarboxylation of lysine. Members of this
family are widely found in all three forms of life.
Length = 294
Score = 30.3 bits (69), Expect = 1.8
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 155 VHLDCEARIAKFLGTPDSILYSYGLST-MFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
+ + A+ G + G S+ + I C GD I+ D H + NGL LS
Sbjct: 60 PIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLS 119
Query: 214 RSTVVYFK 221
+ VY K
Sbjct: 120 GAVPVYLK 127
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 30.4 bits (69), Expect = 1.9
Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 22/155 (14%)
Query: 282 GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI--DVLEENPDLITKLKKNTAIL 339
G+ + + Y S P L+ AA A D E +L + ++ L
Sbjct: 214 GYLIAPPEELLERLKKLLPYTTSG--PSTLSQAAAAAALDDGEEHLEELRERYRRRRDAL 271
Query: 340 RTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV--TSK 397
L ++ L + ++L L + E+ + L E GV V ++
Sbjct: 272 LEALKELGPLVVVKPSGGFFLWLDLPEGDD---------EEFLERLLLEAGVVVRPGSAF 322
Query: 398 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR 432
+ +RL S A E +L +A E L
Sbjct: 323 GEGGEGF-----VRL--SFATPEEELEEALERLAE 350
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 30.3 bits (69), Expect = 2.0
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 248 LGRSGRGLT-EHCGVPVDKIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSSGYV 302
GR+G+ EH GV + DIVT + +L GG G A ++D G
Sbjct: 268 FGRTGKMFAFEHFGV---EPDIVT--LAKSLG--GGLPLSAVVGRAEIMDWPP-GGHGGT 319
Query: 303 FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI 346
F + P +AA+ +DV+EE +L+ + + LR L ++
Sbjct: 320 FGGN--PVACAAALAVLDVIEEE-NLLERAAELGEYLRDRLEEL 360
>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic.
This model represents eukaryotic protein disulfide
isomerases retained in the endoplasmic reticulum (ER)
and closely related forms. Some members have been
assigned alternative or additional functions such as
prolyl 4-hydroxylase and
dolichyl-diphosphooligosaccharide-protein
glycotransferase. Members of this family have at least
two protein-disulfide domains, each similar to
thioredoxin but with the redox-active disulfide in the
motif PWCGHCK, and an ER retention signal at the extreme
C-terminus (KDEL, HDEL, and similar motifs).
Length = 462
Score = 30.4 bits (69), Expect = 2.2
Identities = 34/156 (21%), Positives = 52/156 (33%), Gaps = 23/156 (14%)
Query: 2 ASFILNFVNTMLNRVKLALDSPSAGAVVFGV--------HISGH-LFVEVLLLVVILFLL 52
L+ + NR A V F V + L E V I L
Sbjct: 243 VDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPAVAIQDLE 302
Query: 53 SQKSYKPPKRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGK--- 109
K Y + + + ++ +++ L P + E P+ E GP ++ GK
Sbjct: 303 GNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSE-----PIPEDDEGPVKVLVGKNFD 357
Query: 110 EVVNFASANYLGLI-----GHEKLLESCTSAL-EKY 139
E+V + + L GH K L L EKY
Sbjct: 358 EIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKY 393
>gnl|CDD|220955 pfam11041, DUF2612, Protein of unknown function (DUF2612). This is
a phage protein family expressed from a range of
Proteobacteria species. The function is not known.
Length = 186
Score = 29.6 bits (67), Expect = 2.3
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 286 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL 322
G A V+D+ +S + YVF + A I +D+L
Sbjct: 138 GKAYVLDNYDMSMTIYVFGKPPSAAIL-AIIHGLDIL 173
>gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional.
Length = 389
Score = 30.0 bits (68), Expect = 2.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVA 198
E +AK G D+ ++ G++ + S + F + GD IVA
Sbjct: 69 EEMLAKLEGAEDARGFASGMAAISSTVLSFVEPGDRIVA 107
>gnl|CDD|176520 cd08578, GDPD_NUC-2_fungi, Putative glycerophosphodiester
phosphodiesterase domain of ankyrin repeat protein NUC-2
and similar proteins. This subfamily corresponds to a
putative glycerophosphodiester phosphodiesterase domain
(GDPD) present in Neurospora crassa ankyrin repeat
protein NUC-2 and its Saccharomyces cerevisiae
counterpart, Phosphate system positive regulatory
protein PHO81. Some uncharecaterized NUC-2 sequence
homologs are also included in this family. NUC-2 plays
an important role in the phosphate-regulated signal
transduction pathway in Neurospora crassa. It shows high
similarity to a cyclin-dependent kinase inhibitory
protein PHO81, which is part of the phosphate regulatory
cascade in S. cerevisiae. Both NUC-2 and PHO81 have
multi-domain architecture, including an SPX N-terminal
domain following by several ankyrin repeats and a
putative C-terminal GDPD domain with unknown function.
Although the putative GDPD domain displays sequence
homology to that of bacterial glycerophosphodiester
phosphodiesterases (GP-GDEs, EC 3.1.4.46), the residues
essential for interactions with the substrates and
calcium ions in bacterial GP-GDEs are not conserved in
members of this family, which suggests the function of
putative GDPD domains in these proteins might be
distinct from those in typical bacterial GP-GDEs.
Length = 300
Score = 30.0 bits (68), Expect = 2.7
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 92 EPPVLESAAGPHTIISGKEVVNFA-SANYLGLIGHEKLLESC 132
P + A P + S KE V FA + N LGLI LL
Sbjct: 216 VDPQKLNEADPRSR-SIKEAVRFAKNNNLLGLILPYSLLNIV 256
>gnl|CDD|224893 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid
transport and metabolism].
Length = 557
Score = 30.0 bits (68), Expect = 3.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 189 FCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFK 221
GD ++ D H I +GL L+ +T VY +
Sbjct: 106 VLTPGDKVLVDRNCHKSIHHGLILAGATPVYLE 138
>gnl|CDD|167380 PRK02478, PRK02478, Maf-like protein; Reviewed.
Length = 199
Score = 28.9 bits (65), Expect = 3.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 212 LSRSTVVYFKHNDMDSLRNTLERVTADNKRSNSFGVLGRSGRGLTEHCG 260
+S V+ K DM+ R L++++ + NS VL R G+ L H
Sbjct: 79 MSLGDEVFHKPKDMEEARRHLQKLSGKTHQLNSAVVLVRDGKVLWRHVS 127
>gnl|CDD|201705 pfam01276, OKR_DC_1, Orn/Lys/Arg decarboxylase, major domain.
Length = 417
Score = 29.3 bits (66), Expect = 3.9
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 29/109 (26%)
Query: 155 VHLDCEARIAKFLGTPDSILYSYGLS----TMFSAIPCFCKKGDLIVADEGVHWGIQNGL 210
+ + A+ G S G S T+ A+ C GD ++ D H I + L
Sbjct: 67 PIKEAQKYAARVFGADKSYFVVNGTSGANKTVGMAV---CTPGDTVLIDRNCHKSIHHAL 123
Query: 211 YLSRSTVVYFKHNDMDSLRNTLERVTADNKRSNSFGVLGRSGRGLTEHC 259
+S +T VY + N++G++G G+ H
Sbjct: 124 MMSGATPVYLEPTR------------------NAYGIIG----GIPLHE 150
>gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and
metabolism].
Length = 342
Score = 29.6 bits (67), Expect = 3.9
Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 26/127 (20%)
Query: 311 LASAAITAIDVLEENPDLITKLKKNT--AILRTGLSDIHGLSIASNPESPIVFLILEKST 368
LA+ + A LE++ + N A L GL G+ +A E+ +VF+ L +S
Sbjct: 237 LAAQGLYA---LEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPES- 292
Query: 369 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD---LVK 425
+ AL GV + +R S A SE D LV
Sbjct: 293 -------AIEALRLAGALFYRGVLIGAHGEI----------VRFVTSWATSEEDVDELVA 335
Query: 426 ACESLKR 432
A ++L
Sbjct: 336 AIKALLA 342
>gnl|CDD|217357 pfam03079, ARD, ARD/ARD' family. The two acireductone dioxygenase
enzymes (ARD and ARD', previously known as E-2 and E-2')
from Klebsiella pneumoniae share the same amino acid
sequence, but bind different metal ions: ARD binds Ni2+,
ARD' binds Fe2+. ARD and ARD' can be experimentally
interconverted by removal of the bound metal ion and
reconstitution with the appropriate metal ion. The two
enzymes share the same substrate,
1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield
different products. ARD' yields the alpha-keto precursor
of methionine (and formate), thus forming part of the
ubiquitous methionine salvage pathway that converts
5'-methylthioadenosine (MTA) to methionine. This pathway
is responsible for the tight control of the
concentration of MTA, which is a powerful inhibitor of
polyamine biosynthesis and transmethylation reactions.
ARD yields methylthiopropanoate, carbon monoxide and
formate, and thus prevents the conversion of MTA to
methionine. The role of the ARD catalyzed reaction is
unclear: methylthiopropanoate is cytotoxic, and carbon
monoxide can activate guanylyl cyclase, leading to
increased intracellular cGMP levels. This family also
contains other members, whose functions are not well
characterized.
Length = 157
Score = 28.1 bits (63), Expect = 5.6
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 186 IPCFCKKGDLIVADEGV-HW 204
I F +KGDLI G+ H
Sbjct: 115 IRVFVEKGDLISLPAGIYHR 134
>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of antimicrobials
and herbicides. This subgroup also includes
cystathionine gamma-lyases (CGL), O-acetylhomoserine
sulfhydrylases and O-acetylhomoserine thiol lyases.
CGL's are very similar to CGS's. Members of this group
are widely distributed among all three forms of life.
Length = 369
Score = 28.7 bits (65), Expect = 5.8
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVA 198
E ++A G ++ +S G++ + + + K GD +VA
Sbjct: 46 EKKLAALEGGEAALAFSSGMAAISTVLLALLKAGDHVVA 84
>gnl|CDD|224028 COG1103, COG1103, Archaea-specific pyridoxal phosphate-dependent
enzymes [General function prediction only].
Length = 382
Score = 29.0 bits (65), Expect = 5.9
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 163 IAKFLGTPDSILYSYGL-STMFSAIPCFCKKGDLIVADEGVHW 204
+A+FLG D + + G F+ + CK+GD +V D H+
Sbjct: 70 LAEFLGM-DEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHY 111
>gnl|CDD|180809 PRK07049, PRK07049, methionine gamma-lyase; Validated.
Length = 427
Score = 28.9 bits (65), Expect = 6.5
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIV 197
E R+A + G + L+S G+S + + + F + GD+I+
Sbjct: 89 EDRLAVYEGAESAALFSSGMSAIATTLLAFVRPGDVIL 126
>gnl|CDD|234625 PRK00090, bioD, dithiobiotin synthetase; Reviewed.
Length = 222
Score = 28.2 bits (64), Expect = 6.9
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 23/69 (33%)
Query: 268 IVTAAMGHALATEG-----------GFCTGSARVVD---HQRLSSSG--------YVFSA 305
+VTAA+ AL G G C + R D QRLS Y F
Sbjct: 15 VVTAALAQALREAGYSVAGYKPVQSG-CEETDRNGDALALQRLSGLPLDYEDVNPYRFEE 73
Query: 306 SLPPYLASA 314
L P+LA+A
Sbjct: 74 PLSPHLAAA 82
>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate
phosphoribosyltransferase; Provisional.
Length = 295
Score = 28.3 bits (64), Expect = 7.1
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 25 AGAVVFGVHISGHLFVEVLLLVVILFLLSQKSY 57
AG V GV +S L + LL LFL + K
Sbjct: 156 AGGVAIGVPLSPWLLLCTALLS--LFLAAGKRK 186
>gnl|CDD|215226 PLN02405, PLN02405, hexokinase.
Length = 497
Score = 28.6 bits (64), Expect = 7.9
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 234 RVTADNKRSNSFGVLGRSGRGLTEHCGVPVDKI----DIVTAAMGHALATEGG 282
R+ + K + + +L + E C P+ K+ D +T M LA+EGG
Sbjct: 27 RMKSSGKWARAMEIL----KEFEEDCATPIGKLRQVADAMTVEMHAGLASEGG 75
>gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase. This
model describes O-succinylhomoserine sulfhydrylase, one
of several related pyridoxal phosphate-dependent enzymes
of cysteine and methionine metabolism. This enzyme is
part of an alternative pathway of homocysteine
biosynthesis, a step in methionine biosynthesis [Amino
acid biosynthesis, Aspartate family].
Length = 381
Score = 28.3 bits (63), Expect = 9.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVA 198
E R+A G ++ + G++ +F+A+ GD +VA
Sbjct: 60 EERLALLEGAEAAVATASGMAAIFAALMALLGAGDHVVA 98
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.402
Gapped
Lambda K H
0.267 0.0712 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,670,337
Number of extensions: 2254101
Number of successful extensions: 2280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2247
Number of HSP's successfully gapped: 72
Length of query: 442
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 342
Effective length of database: 6,502,202
Effective search space: 2223753084
Effective search space used: 2223753084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)