RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013461
(442 letters)
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 183 bits (466), Expect = 3e-54
Identities = 98/381 (25%), Positives = 164/381 (43%), Gaps = 53/381 (13%)
Query: 92 EPPVLESAAGPH-TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFY 150
E ++ SA T+ G V+NF + NYLGL H L+ + + ++ +G G R
Sbjct: 27 EERIITSAQQADITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFIC 86
Query: 151 GTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL 210
GT D H + E ++A FLG D+ILYS D I++D H I +G+
Sbjct: 87 GTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGV 146
Query: 211 YLSRSTVVYFKHNDMDSLRNTLERVTADNKR----------------------------- 241
L ++ + +NDM L L+ R
Sbjct: 147 RLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKY 206
Query: 242 --------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSARVVD 292
S++ G +G +GRG E+C V ++DI+T +G AL GG+ VV+
Sbjct: 207 DALVMVDDSHAVGFVGENGRGSHEYCDVM-GRVDIITGTLGKALGGASGGYTAARKEVVE 265
Query: 293 HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 352
R S Y+FS SL P + +A+I ++++E +L +L N R +S
Sbjct: 266 WLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLAG 325
Query: 353 SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRL 412
+ + I+ ++L D + + A L+++G++V ++ K + IR
Sbjct: 326 A--DHAIIPVML--------GDAVVAQKFAR-ELQKEGIYVTGFFYPVVPKGQ--ARIRT 372
Query: 413 FVSAAHSEADLVKACESLKRI 433
+SAAH+ + +A E+ RI
Sbjct: 373 QMSAAHTPEQITRAVEAFTRI 393
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
(8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 154 bits (389), Expect = 3e-43
Identities = 81/382 (21%), Positives = 137/382 (35%), Gaps = 60/382 (15%)
Query: 92 EPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG 151
+ AG + ++ +NF+S +YLGL H +++ + E++G+GS G G
Sbjct: 21 RRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSG 80
Query: 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY 211
VH E +A++LG ++L+ G + + I K D I AD H +
Sbjct: 81 YSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAAS 140
Query: 212 LSRSTVVYFKHNDMDSLRNTLERVTADNKR------------------------------ 241
LS S + F HND+ L L +
Sbjct: 141 LSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWL 200
Query: 242 ----SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLS 297
++ GV+G GRG V + + + G G S+ V D+
Sbjct: 201 MVDDAHGTGVIGEQGRGSCWLQKVKPELLVVT---FGKGFGVSGAAVLCSSTVADYLLQF 257
Query: 298 SSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPES 357
+ ++S S+PP A A ++ V+ + + K I R ++ S
Sbjct: 258 ARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCS 317
Query: 358 PIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPV------GIR 411
I LI+ D +A+ L++ G +V R P +R
Sbjct: 318 AIQPLIV--------GDNSRALQLAE-KLRQQGCWVTAI--------RPPTVPAGTARLR 360
Query: 412 LFVSAAHSEADLVKACESLKRI 433
L ++AAH D+ + E L
Sbjct: 361 LTLTAAHEMQDIDRLLEVLHGN 382
>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter
capsulatus [TaxId: 1061]}
Length = 396
Score = 141 bits (356), Expect = 2e-38
Identities = 84/391 (21%), Positives = 141/391 (36%), Gaps = 69/391 (17%)
Query: 94 PVLESAAGPH-------TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGP 146
+E G +++ + +YLG+ H +L + ALE G GS G
Sbjct: 23 IDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGT 82
Query: 147 RGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKK--GDLIVADEGVHW 204
R GT H EA IA ++++S + + + G +I +D H
Sbjct: 83 RNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHA 142
Query: 205 GIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKR----------------------- 241
+ G+ + F+HND+ LR + +
Sbjct: 143 SMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDI 202
Query: 242 ------------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSAR 289
++ G+ G G G+ E G+ +IDI + A GG+ SAR
Sbjct: 203 AEEFGALTYIDEVHAVGMYGPRGAGVAERDGLM-HRIDIFNGTLAKAYGVFGGYIAASAR 261
Query: 290 VVDHQRLSSSGYVFSASLPPYLASA--AITAIDVLEENPDLITKLKKNTAILRTGLSDIH 347
+VD R + G++FS SLPP +A+ A A E L + + +L+ L
Sbjct: 262 MVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKA-L 320
Query: 348 GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV-----TSKRSMLD 402
G+ I + S IV +++ D + ++D L + GV+V T R
Sbjct: 321 GMPIIDH-GSHIVPVVI--------GDPVHTKAVSDMLLSDYGVYVQPINFPTVPR---G 368
Query: 403 KCRLPVGIRLFVSAAHSEADLVKACESLKRI 433
RL R S H + ++ +
Sbjct: 369 TERL----RFTPSPVHDLKQIDGLVHAMDLL 395
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 66.4 bits (160), Expect = 1e-12
Identities = 44/357 (12%), Positives = 84/357 (23%), Gaps = 60/357 (16%)
Query: 127 KLLESCTSALEKYGVGS------CGPR-GFYGTIDVHLDCEARIAKFLGTPDSILYSYGL 179
KL E AL ++G G R T +H ++ KFLG + + +
Sbjct: 13 KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAR 72
Query: 180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLE------ 233
F+ + KK +V DE H+ + + D T E
Sbjct: 73 EAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTI 132
Query: 234 ---------RVTADNKRSNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGH--------- 275
+ ++G L + V + A+G
Sbjct: 133 EETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIG 192
Query: 276 ------------ALATEGGFCTGSARVVDHQRLSSSGYVFSAS------LPPYLASAAIT 317
A + G + S Y +
Sbjct: 193 ADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMA 252
Query: 318 AIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE-SPIVFLILEKSTGSMKNDLQ 376
+ + E + + + + + NP ++F E K
Sbjct: 253 SFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKG 312
Query: 377 LLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 433
+ LK + + + S+ ++ + K I
Sbjct: 313 GRFFLYR-ELKSRKIHGIK---------PGLTRYFKLSTYGLSDEEVDYVLNAFKEI 359
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 59.5 bits (142), Expect = 2e-10
Identities = 37/370 (10%), Positives = 80/370 (21%), Gaps = 82/370 (22%)
Query: 113 NFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDS 172
F+S N G ++ ++ YGT ++ + + +
Sbjct: 6 GFSSDNIAGA--SPEVAQALVKHSSGQAGP-------YGTDELTAQVKRKFCEIFERDVE 56
Query: 173 ILY-SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSR-STVVYFKHNDMDSLRN 230
+ G + + I H S D + +
Sbjct: 57 VFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKL 116
Query: 231 TLERVTADNKRS------------------------------------------------ 242
+ R+ +
Sbjct: 117 DIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGS 176
Query: 243 NSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYV 302
L G E + A + + + +
Sbjct: 177 RFANALVSLGCSPAEMTWKA-GVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAG 235
Query: 303 FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFL 362
+S +L++ + + K L GL + G+ + E+ I+F
Sbjct: 236 HLSSKMRFLSAQIDAYLT-DDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFC 294
Query: 363 ILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD 422
L+ + D AL + G + P +R S A + D
Sbjct: 295 RLD-------------SAMID-ALLKAGFGFYHDRWG-------PNVVRFVTSFATTAED 333
Query: 423 LVKACESLKR 432
+ ++
Sbjct: 334 VDHLLNQVRL 343
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 52.5 bits (124), Expect = 4e-08
Identities = 37/329 (11%), Positives = 78/329 (23%), Gaps = 65/329 (19%)
Query: 150 YGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG 209
YG + E A+ G ++ G +I ++GD ++ + H
Sbjct: 30 YGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEV 89
Query: 210 LYLSRSTVVYFKHNDMDSLRNTLERVT--------------------------------- 236
++ + V + + V
Sbjct: 90 GAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLE 149
Query: 237 -----ADNKRSNSFGVLGRS-------GRGLTEHCGVPVDKIDIVTAAMGHALATEGGFC 284
+ + V ++ A G
Sbjct: 150 NIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVV 209
Query: 285 TGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS 344
G ++ R + A I L + D + + +N L L
Sbjct: 210 VGDRDFIERARKARKMLGGGMRQA---GVLAAAGIIALTKMVDRLKEDHENARFLALKLK 266
Query: 345 DIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKC 404
+I + ++ +V L + + + AL+ GV +
Sbjct: 267 EIGYSVNPEDVKTNMVILRTDNLKVNAH-------GFIE-ALRNSGVLANAVSDT----- 313
Query: 405 RLPVGIRLFVSAAHSEADLVKACESLKRI 433
IRL S D+ +A +++
Sbjct: 314 ----EIRLVTHKDVSRNDIEEALNIFEKL 338
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 41.9 bits (97), Expect = 1e-04
Identities = 11/86 (12%), Positives = 22/86 (25%), Gaps = 1/86 (1%)
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSA-IPCFCKKGDLIVADEGVHWGIQNGLYL 212
+ E A+ + G S + GDL++ D H + N
Sbjct: 66 GPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALA 125
Query: 213 SRSTVVYFKHNDMDSLRNTLERVTAD 238
+ + + +D
Sbjct: 126 MAGGRPVYLQTNRNPYGFIGGIYDSD 151
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 41.4 bits (95), Expect = 1e-04
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 11/115 (9%)
Query: 113 NFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDS 172
+F + +G+ H K+L+ G YG I + L PD+
Sbjct: 3 SFVNDYSVGM--HPKILDLMARDNMTQHAG-------YGQDSHCAKAARLIGELLERPDA 53
Query: 173 ILY--SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDM 225
++ S G T A + + ++A + H + +
Sbjct: 54 DVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP 108
Score = 36.1 bits (81), Expect = 0.008
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 19/88 (21%)
Query: 346 IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR 405
G+ +A S +F ILE +M +L D+ +DG
Sbjct: 272 ACGIRLAWPSASNQLFPILE---NTMIAELNNDFDMYTVEPLKDG--------------- 313
Query: 406 LPVGIRLFVSAAHSEADLVKACESLKRI 433
+RL S A E + + E LKR+
Sbjct: 314 -TCIMRLCTSWATEEKECHRFVEVLKRL 340
>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas
putida [TaxId: 303]}
Length = 392
Score = 37.8 bits (87), Expect = 0.002
Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 5/127 (3%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVY 219
EAR+A G + + G+ + S + + GD ++ ++ L+
Sbjct: 65 EARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV 124
Query: 220 FKHNDMDSLRNTLERVTADNKRSNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT 279
+ + LE R F + + + + G +
Sbjct: 125 KLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIA-----GVAKIARKHGATVVV 179
Query: 280 EGGFCTG 286
+ +CT
Sbjct: 180 DNTYCTP 186
>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas
vaginalis, MGL2 [TaxId: 5722]}
Length = 331
Score = 35.6 bits (81), Expect = 0.010
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWG 205
E +IAK + G+ + +++ F K GD +++D+ ++
Sbjct: 4 EGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGC 49
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium
lapideum [TaxId: 32060]}
Length = 388
Score = 33.6 bits (76), Expect = 0.048
Identities = 49/371 (13%), Positives = 105/371 (28%), Gaps = 59/371 (15%)
Query: 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166
G +V +F++ + ++E+ +ALE+ G + R
Sbjct: 28 EGIDVCSFSAGE-PDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGL 86
Query: 167 LGTPDSILYSYGLS-TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDM 225
D+IL + G ++F+ + + GD ++ + L+ T V
Sbjct: 87 CYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVE 146
Query: 226 DSLRNT---LERVTADNKR-------SNSFGVLGRSGRGLTEHCGVPVDKIDIVT-AAMG 274
+ + + + + SN G++ + +++
Sbjct: 147 TQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYE 206
Query: 275 HALATEGGFCTGSA-------RVVDHQRLSSS--------GYV------------FSASL 307
L + + A R V + + G++
Sbjct: 207 KILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHS 266
Query: 308 PPYLASAAITAIDVLEENPD-----LITKLKKNTAILRTGLSDIHGLSIASNPESPIVFL 362
+ + A EN ++ + + L+ + GL + +F
Sbjct: 267 TSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFP 326
Query: 363 ILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD 422
+ K+ S D L + V V D C IRL S A
Sbjct: 327 SIAKTGRSS-------LDFCSELLDQHQVATVPGAAFGADDC-----IRL--SYATDLDT 372
Query: 423 LVKACESLKRI 433
+ + E L++
Sbjct: 373 IKRGMERLEKF 383
>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL
{Escherichia coli [TaxId: 562]}
Length = 382
Score = 33.2 bits (74), Expect = 0.062
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 361 FLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSE 420
FL+++ S S +D + W +E GV + D IRL A E
Sbjct: 317 FLLVDYSAVSTLDD----VEFCQWLTQEHGVAAIPLSVFCADP-FPHKLIRL--CFAKKE 369
Query: 421 ADLVKACESLKRI 433
+ L+ A E L+++
Sbjct: 370 STLLAAAERLRQL 382
>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I
{Human (Homo sapiens) [TaxId: 9606]}
Length = 418
Score = 33.2 bits (74), Expect = 0.064
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 379 EDIADWALKEDGVFVV--TSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR 432
W +K G+ + + S+ + IR EA L E L++
Sbjct: 361 RRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRF--CFVKDEATLQAMDEKLRK 414
>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 395
Score = 32.6 bits (73), Expect = 0.097
Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 17/154 (11%)
Query: 288 ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH 347
+ V + + + + + A A +T + + + KLK+ + L++I
Sbjct: 259 SEVREAIDRLARIRLCPNTPAQFAAIAGLTGPM--DYLKEYMKKLKERRDYIYKRLNEIP 316
Query: 348 GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLP 407
G+S + +F +E KND ++ L V V
Sbjct: 317 GISTTKPQGAFYIFPKIEVGPW--KND----KEFVLDVLHNAHVLFVHGSGFGEYGAGH- 369
Query: 408 VGIRLFVSAAHSEADLVKACESLKRISAVVLRDR 441
R L +A + ++ +++R
Sbjct: 370 --FRA--VFLPPIEILEEAMDRFEK----FMKER 395
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 32.1 bits (72), Expect = 0.12
Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 15/191 (7%)
Query: 245 FGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFS 304
G E GV D+ T A A TG A V+D G ++
Sbjct: 242 SGAGRTGTLFAMEQMGV---APDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYA 298
Query: 305 ASLPPYLASAAITAIDVLEENPDLITKLKKNTAIL--RTGLSDIHGLSIASNPESPIVFL 362
+ P AA+ + V E+ L + +++ H ++ +
Sbjct: 299 GN--PIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAI 356
Query: 363 ILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD 422
L + K D +L +I A + G+ +++ +R+ V +A
Sbjct: 357 ELFEDGDHNKPDAKLTAEIVARARDK-GLILLSCGPY-------YNVLRILVPLTIEDAQ 408
Query: 423 LVKACESLKRI 433
+ + E + +
Sbjct: 409 IRQGLEIISQC 419
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
[TaxId: 90371]}
Length = 376
Score = 31.5 bits (70), Expect = 0.18
Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 7/96 (7%)
Query: 148 GFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHWGI 206
G+ T + + EA + G ++ S + M A+ +GD ++
Sbjct: 25 GWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVST 84
Query: 207 QNGLYLSRSTVVYFKHN------DMDSLRNTLERVT 236
N + L + V + + + + T
Sbjct: 85 LNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQT 120
>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma
cruzi [TaxId: 5693]}
Length = 412
Score = 30.6 bits (67), Expect = 0.39
Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 361 FLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSE 420
++ + D++ + + L+E+ V V+ RL +
Sbjct: 341 MYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGF-----TRL--TTTRPV 393
Query: 421 ADLVKACESLKR 432
+A E +K
Sbjct: 394 EVYREAVERIKA 405
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 30.6 bits (68), Expect = 0.44
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 12/63 (19%)
Query: 371 MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESL 430
K+DLQ L++ G+++ S+ F S AH+E D+ +
Sbjct: 373 KKSDLQKFSRFHRGMLEQ-GIYLAPSQF-----------EAGFTSLAHTEEDIDATLAAA 420
Query: 431 KRI 433
+ +
Sbjct: 421 RTV 423
>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 380
Score = 30.2 bits (67), Expect = 0.49
Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 6/127 (4%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVY 219
E+ +AK + ++ G++ SA+ K G+ IVA + V+ G L
Sbjct: 55 ESLLAKLDKADRAFCFTSGMA-ALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGV 113
Query: 220 FKHNDMDSLRNTLERVTADNKRSNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT 279
+ + + + + KI + A G +
Sbjct: 114 VVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPR-----QQISDIRKISEMAHAQGALVLV 168
Query: 280 EGGFCTG 286
+ +
Sbjct: 169 DNSIMSP 175
>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA
synthase) {Amycolatopsis mediterranei [TaxId: 33910]}
Length = 384
Score = 29.7 bits (65), Expect = 0.77
Identities = 7/68 (10%), Positives = 16/68 (23%), Gaps = 1/68 (1%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHWGIQNGLYLSRSTVV 218
E A G ++ + G + A+ G ++ + V
Sbjct: 40 EREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQRLGAVTV 99
Query: 219 YFKHNDMD 226
+
Sbjct: 100 PVDVDAAT 107
>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I
{Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}
Length = 418
Score = 29.0 bits (63), Expect = 1.2
Identities = 10/70 (14%), Positives = 23/70 (32%)
Query: 363 ILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD 422
+ K + + D + W K G+ + + + + + +
Sbjct: 344 LDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDEN 403
Query: 423 LVKACESLKR 432
L KA E L++
Sbjct: 404 LQKAAEILRK 413
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 29.0 bits (64), Expect = 1.4
Identities = 5/40 (12%), Positives = 10/40 (25%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVAD 199
E + + G + G K G + +
Sbjct: 81 EKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGN 120
>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter
freundii [TaxId: 546]}
Length = 397
Score = 28.5 bits (63), Expect = 1.9
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN 208
E ++A + + G+S + + + C++GD IV+ ++
Sbjct: 69 EKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHA 117
>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT
{Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}
Length = 361
Score = 28.1 bits (61), Expect = 2.3
Identities = 39/281 (13%), Positives = 83/281 (29%), Gaps = 13/281 (4%)
Query: 153 IDVHLDCEARIAKFLGTPDS--ILYSYGLSTMFSAIPCFCKKGDLIVADEGVH--WGIQN 208
VH + +AR+ LG P +L+ G ++ A+ + A+ + W +
Sbjct: 47 EAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKA 106
Query: 209 GLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRSNSFGVLGRSGRGLTEHCGVPVDKIDI 268
+ + S TL ++ + N+ + T + + +
Sbjct: 107 LKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQDNAAYLHL------TSNETIEGAQFKA 160
Query: 269 VTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDL 328
L + S R D + +L P + I D++ E+P
Sbjct: 161 FPDTGSVPLIGDMSSDILS-RPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKH 219
Query: 329 ITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKE 388
+ + + ++ S L + G ++ Q A
Sbjct: 220 LPTMLRYDTYVKNNSLYNTPPSF--GIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDA 277
Query: 389 DGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACES 429
+ + R + I +++ E + VKA E
Sbjct: 278 IDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQ 318
>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c)
{Campylobacter jejuni [TaxId: 197]}
Length = 374
Score = 27.7 bits (60), Expect = 2.9
Identities = 4/40 (10%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 159 CEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIV 197
E + + + +++ + + + A+ K+ D+++
Sbjct: 26 FEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVL 65
>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human
immunodeficiency virus type 1 [TaxId: 11676]}
Length = 424
Score = 27.6 bits (61), Expect = 2.9
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 58 KPPK---RPLTK---KEIDELCDEWVPESLIPPIIEEMRCEPPVL 96
PK PLT+ K + E+C E E I I E PV
Sbjct: 13 DGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF 57
>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo
sapiens), beta isoform [TaxId: 9606]}
Length = 294
Score = 27.3 bits (60), Expect = 3.2
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 11/62 (17%)
Query: 47 VILFLLSQKSYKPPKR-PLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI 105
+I LL + KP K L + EI LC + E +P +LE A P I
Sbjct: 7 IIQRLLEVRGSKPGKNVQLQENEIRGLCLK---------SREIFLSQPILLELEA-PLKI 56
Query: 106 IS 107
Sbjct: 57 CG 58
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human
immunodeficiency virus type 1 [TaxId: 11676]}
Length = 216
Score = 26.1 bits (57), Expect = 7.1
Identities = 13/45 (28%), Positives = 15/45 (33%), Gaps = 6/45 (13%)
Query: 58 KPPK---RPLTK---KEIDELCDEWVPESLIPPIIEEMRCEPPVL 96
PK PLT + +C E E I I E PV
Sbjct: 17 DGPKVAQWPLTAAKIAALVAICTEMEKEGKISKIGPENPYNTPVF 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.402
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,632,163
Number of extensions: 77531
Number of successful extensions: 360
Number of sequences better than 10.0: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 35
Length of query: 442
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 354
Effective length of database: 1,199,356
Effective search space: 424572024
Effective search space used: 424572024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)