BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013462
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 205 LEDFGVRLVTFDLPGFGESDPHPSRN---LNSSALDMLHLANAVGVSDKFWVVGYSSGSM 261
L G R++ D+ G+GES P + +M+ + +G+S ++ G+ G M
Sbjct: 281 LAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFI-GHDWGGM 339
Query: 262 HAWAALRYIPDRV-AGAAMFAPMINPYEPSMTKEE 295
W + P+RV A A++ P I P P+M+ E
Sbjct: 340 LVWYMALFYPERVRAVASLNTPFI-PANPNMSPLE 373
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 205 LEDFGVRLVTFDLPGFGESDPHPS---RNLNSSALDMLHLANAVGVSDKFWVVGYSSGSM 261
L G R++ D+ G+GES P + +M+ + +G+S ++ G+ G M
Sbjct: 62 LAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFI-GHDWGGM 120
Query: 262 HAWAALRYIPDRVAGAAMFAPMINPYEPSMTKEE 295
W + P+RV A P P+M+ E
Sbjct: 121 LVWYMALFYPERVRAVASLNTPFIPANPNMSPLE 154
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 205 LEDFGVRLVTFDLPGFGESDPHPS---RNLNSSALDMLHLANAVGVSDKFWVVGYSSGSM 261
L G R++ D+ G+GES P + +M+ + +G+S ++ G+ G M
Sbjct: 77 LAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFI-GHDWGGM 135
Query: 262 HAWAALRYIPDRVAGAAMFAPMINPYEPSMTKEE 295
W + P+RV A P P+M+ E
Sbjct: 136 LVWYMALFYPERVRAVASLNTPFIPANPNMSPLE 169
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 216 DLPGFGESDPHPSRN------LNSSALDMLHLANAVGVSDKFWVVGYSSGSMHAWAALRY 269
DL GFG+S+ P N L+ +A D L +A+G+ +K +VVG+ ++ +R
Sbjct: 62 DLRGFGDSEK-PDLNDLSKYSLDKAADDQAALLDALGI-EKAYVVGHDFAAIVLHKFIRK 119
Query: 270 IPDRVAGAAMFAPMINPYEP 289
DRV AA+F P+ + P
Sbjct: 120 YSDRVIKAAIFDPIQPDFGP 139
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 213 VTFDLPGFGESDP-HPSRNLNSSALDMLHLANAVGVSDKFWVVGYSSGSMHAWAALRYIP 271
+ DLPG G SDP PS + N + + +G + +F + G+S G A A ++
Sbjct: 53 IYLDLPGXGNSDPISPSTSDNVLETLIEAIEEIIG-ARRFILYGHSYGGYLAQAIAFHLK 111
Query: 272 DRVAGAAMFAPMINP-YEPSMTKEEMRRTWEEWLPRRRFMYF 312
D+ G + P+I + +T + + E+ P YF
Sbjct: 112 DQTLGVFLTCPVITADHSKRLTGKHINILEEDINPVENKEYF 153
>pdb|3FSG|A Chain A, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|B Chain B, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|C Chain C, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 213 VTFDLPGFGESDP-HPSRNLNSSALDMLHLANAVGVSDKFWVVGYSSGSMHAWAALRYIP 271
+ DLPG G SDP PS + N + + +G + +F + G+S G A A ++
Sbjct: 53 IYLDLPGXGNSDPISPSTSDNVLETLIEAIEEIIG-ARRFILYGHSYGGYLAQAIAFHLK 111
Query: 272 DRVAGAAMFAPMINP-YEPSMTKEEMRRTWEEWLPRRRFMYF 312
D+ G + P+I + +T + + E+ P YF
Sbjct: 112 DQTLGVFLTCPVITADHSKRLTGKHINILEEDINPVENKEYF 153
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 201 RTSLLEDFGVRLVTFDLPGFGESD-PHPSRNLNSSALDMLHLANAVGVSDKFWVVGYSSG 259
+++ L D G R++T+D GFG+S P + ++ A D+ + + + D +VG+S G
Sbjct: 43 QSAALLDAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSMG 101
Query: 260 SMH-AWAALRYIPDRVAGAAMFAPMINPYEPSMTKEE 295
+ A Y R+A A A + EP + K +
Sbjct: 102 TGEVARYVSSYGTARIAAVAFLASL----EPFLLKTD 134
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 201 RTSLLEDFGVRLVTFDLPGFGESD-PHPSRNLNSSALDMLHLANAVGVSDKFWVVGYSSG 259
+++ L D G R++T+D GFG+S P + ++ A D+ + + + D +VG+S+G
Sbjct: 42 QSAALLDAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSTG 100
Query: 260 SMH-AWAALRYIPDRVAGAAMFAPMINPYEPSMTKEE 295
+ A Y R+A A A + EP + K +
Sbjct: 101 TGEVARYVSSYGTARIAKVAFLASL----EPFLLKTD 133
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 205 LEDFGVRLVTFDLPGFGESDPHPSRNLNSSALDMLHLANAVGV--------SDKFWVVGY 256
L + G R V DL G+G++ P + S +LHL V +K +VV +
Sbjct: 54 LAERGYRAVAPDLRGYGDTTGAPLND--PSKFSILHLVGDVVALLEAIAPNEEKVFVVAH 111
Query: 257 SSGSMHAWAALRYIPDRVAGAAMFAPMINPYEPSMTKEE 295
G++ AW + PD+V + + P M E
Sbjct: 112 DWGALIAWHLCLFRPDKVKALVNLSVHFSKRNPKMNVVE 150
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 205 LEDFGVRLVTFDLPGFGESDPHPSRNLNSSALDMLHLANAVGV--------SDKFWVVGY 256
L + G R V DL G+G++ P + S +LHL V +K +VV +
Sbjct: 54 LAERGYRAVAPDLRGYGDTTGAPLND--PSKFSILHLVGDVVALLEAIAPNEEKVFVVAH 111
Query: 257 SSGSMHAWAALRYIPDRVAGAAMFAPMINPYEPSMTKEE 295
G++ AW + PD+V + + P M E
Sbjct: 112 DWGALIAWHLCLFRPDKVKALVNLSVHFSKRNPKMNVVE 150
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 201 RTSLLEDFGVRLVTFDLPGFGESD-PHPSRNLNSSALDMLHLANAVGVSDKFWVVGYSSG 259
+++ L D G R++T+D GFG+S P + ++ A D+ + + + D +VG+S G
Sbjct: 42 QSAALLDAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSMG 100
Query: 260 SMH-AWAALRYIPDRVAGAAMFAPMINPYEPSMTKEE 295
+ A Y R+A A A + EP + K +
Sbjct: 101 TGEVARYVSSYGTARIAKVAFLASL----EPFLLKTD 133
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 201 RTSLLEDFGVRLVTFDLPGFGESD-PHPSRNLNSSALDMLHLANAVGVSDKFWVVGYSSG 259
+++ L D G R++T+D GFG+S P + ++ A D+ + + + D +VG+S G
Sbjct: 42 QSAALLDAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSMG 100
Query: 260 SMH-AWAALRYIPDRVAGAAMFAPMINPYEPSMTKEE 295
+ A Y R+A A A + EP + K +
Sbjct: 101 TGEVARYVSSYGTARIAKVAFLASL----EPFLLKTD 133
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 175 PAGRARYSLIAPHSFLSSRLAGIPGVRTSLLEDFGVRLVTFDLPGFGESDPHPSRNLNSS 234
P G I H F ++R + + L D + V FD G G+SD + N +
Sbjct: 41 PFGEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSD---GKFENMT 97
Query: 235 ALDMLHLANAVGVSDK-------FWVVGYSSGSMHAWAALRYIPDRVAGAAMFAP 282
L+ + ANA+ K ++VG+S G + A PD + + AP
Sbjct: 98 VLNEIEDANAILNYVKTDPHVRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAP 152
>pdb|3SO4|A Chain A, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|B Chain B, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|C Chain C, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|D Chain D, Methionine-Adenosyltransferase From Entamoeba Histolytica
Length = 415
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 400 KECQRRGFLPWLR----AMYSQEECELAGFLDPIHIWQVCI 436
+EC+ +G LPWLR + + E E+ G L PI + + I
Sbjct: 170 QECREKGILPWLRPDSKSQVTLEYEEVEGHLKPIRVHTIVI 210
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 205 LEDFGVRLVTFDLPGFGESDPHPSRNLNSSAL---DMLHLANAVGVSDKFWVVGYSSGSM 261
L G R++ D+ G+G+S P + L +M+ + +G+ ++ G+ +
Sbjct: 279 LAQAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCKEMVTFLDKLGIPQAVFI-GHDWAGV 337
Query: 262 HAWAALRYIPDRVAGAAMFAPMINPYEPSMTKEEMRRT 299
W + P+RV A P +P ++ ++ R+
Sbjct: 338 MVWNMALFYPERVRAVASLNTPFMPPDPDVSPMKVIRS 375
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 175 PAGRARYSLIAPHSFLSSRLAGIPGVRTSLLEDFGVRLVTFDLPGFGESDPHPSRNLNSS 234
P G I H F ++R + + L D + V FD G G+SD + N +
Sbjct: 41 PFGEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSD---GKFENMT 97
Query: 235 ALDMLHLANAVGVSDK-------FWVVGYSSGSMHAWAALRYIPDRVAGAAMFAP 282
L+ + ANA+ K ++VG++ G + A PD + + AP
Sbjct: 98 VLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAP 152
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 175 PAGRARYSLIAPHSFLSSRLAGIPGVRTSLLEDFGVRLVTFDLPGFGESDPHPSRNLNSS 234
P G I H F ++R + + L D + V FD G G+SD + N +
Sbjct: 41 PFGEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSD---GKFENMT 97
Query: 235 ALDMLHLANAVGVSDK-------FWVVGYSSGSMHAWAALRYIPDRVAGAAMFAP 282
L+ + ANA+ K ++VG++ G + A PD + + AP
Sbjct: 98 VLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAP 152
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 207 DFGVRLVTFDLPGFGESDP---HPSRNL-NSSALDMLHLANAVGVSDKFWVVGYSSGSMH 262
D G R++ D PGF +SD R L N+ A+ L +A+ + D+ +VG S G
Sbjct: 61 DAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVK--GLMDALDI-DRAHLVGNSMGGAT 117
Query: 263 AWA-ALRYIPDRVA----------GAAMFAPM 283
A AL Y PDR+ G +MFAPM
Sbjct: 118 ALNFALEY-PDRIGKLILMGPGGLGPSMFAPM 148
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 207 DFGVRLVTFDLPGFGESDP---HPSRNL-NSSALDMLHLANAVGVSDKFWVVGYSSGSMH 262
D G R++ D PGF +SD R L N+ A+ L +A+ + D+ +VG S G
Sbjct: 61 DAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVK--GLMDALDI-DRAHLVGNSMGGAT 117
Query: 263 AWA-ALRYIPDRVA----------GAAMFAPM 283
A AL Y PDR+ G +MFAPM
Sbjct: 118 ALNFALEY-PDRIGKLILMGPGGLGPSMFAPM 148
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|D Chain D, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 520
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 38 SVKDEPELEKENLKDQVTAFLKSWGEMLL----ELGKGCKDILQQTVVTEDSFVVQKLGG 93
S KD E+ NL+D + A+ + ++G G + +L+ + E+SF +K G
Sbjct: 290 SHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGF 349
Query: 94 PVAKVSGRLRFLNDFLPEDRDPIHAWPVVFFVFIL 128
V + S L + RD + +PV F V L
Sbjct: 350 TVHEASTALNCSREEFT--RDYLTTFPVRFQVLKL 382
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p
pdb|3V5R|B Chain B, Crystal Structure Of The Unliganded Form Of Gal3p
Length = 505
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 38 SVKDEPELEKENLKDQVTAFLKSWGEMLL----ELGKGCKDILQQTVVTEDSFVVQKLGG 93
S KD E+ NL+D + A+ + ++G G + +L+ + E+SF +K G
Sbjct: 275 SHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGF 334
Query: 94 PVAKVSGRLRFLNDFLPEDRDPIHAWPVVFFVFIL 128
V + S L + RD + +PV F V L
Sbjct: 335 TVHEASTALNCSREEFT--RDYLTTFPVRFQVLKL 367
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 195 AGIPGVRTSLLEDFGVRLVTFDLPGFGESDPHPSRNLNSS---ALDMLHLANAVGVSDKF 251
GI L + +++ FD G G S PH S + N++ D+ L GV +++
Sbjct: 49 GGISPHHRQLFDPERYKVLLFDQRGCGRSRPHASLDNNTTWHLVADIERLREMAGV-EQW 107
Query: 252 WVVGYSSGSMHAWAALRYIPDRVA 275
V G S GS A A + P+RV+
Sbjct: 108 LVFGGSWGSTLALAYAQTHPERVS 131
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 205 LEDFGVRLVTFDLPGFGESDPH---PSRNLNSSALDMLHLANAVGVSDKFWVVGYSSGSM 261
L G R+V D G+G S + + + D++ + ++ G F VVG+ G+
Sbjct: 56 LAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAF-VVGHDWGAP 114
Query: 262 HAWAALRYIPDRVAG 276
AW PDR AG
Sbjct: 115 VAWTFAWLHPDRCAG 129
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 205 LEDFGVRLVTFDLPGFGESDPH---PSRNLNSSALDMLHLANAVGVSDKFWVVGYSSGSM 261
L G R+V D G+G S + + + D++ + ++ G F VVG+ G+
Sbjct: 50 LAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAF-VVGHDWGAP 108
Query: 262 HAWAALRYIPDRVAG 276
AW PDR AG
Sbjct: 109 VAWTFAWLHPDRCAG 123
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 207 DFGVRLVTFDLPGFGESDP---HPSRNL-NSSALDMLHLANAVGVSDKFWVVGYSSGSMH 262
D G R++ D PGF +SD R L N+ A+ L +A+ + D+ +VG + G
Sbjct: 61 DAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVK--GLMDALDI-DRAHLVGNAMGGAT 117
Query: 263 AWA-ALRYIPDRVA----------GAAMFAPM 283
A AL Y PDR+ G +MFAPM
Sbjct: 118 ALNFALEY-PDRIGKLILMGPGGLGPSMFAPM 148
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 207 DFGVRLVTFDLPGFGESDP---HPSRNL-NSSALDMLHLANAVGVSDKFWVVGYSSGSMH 262
D G R++ D PGF +SD R L N+ A+ L +A+ + D+ +VG + G
Sbjct: 58 DAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVK--GLMDALDI-DRAHLVGNAMGGAT 114
Query: 263 AWA-ALRYIPDRVA----------GAAMFAPM 283
A AL Y PDR+ G +MFAPM
Sbjct: 115 ALNFALEY-PDRIGKLILMGPGGLGPSMFAPM 145
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 207 DFGVRLVTFDLPGFGESDP---HPSRNL-NSSALDMLHLANAVGVSDKFWVVGYSSGSMH 262
D G R++ D PGF +SD R L N+ A+ L +A+ + D+ +VG + G
Sbjct: 61 DAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVK--GLMDALDI-DRAHLVGNAMGGAT 117
Query: 263 AWA-ALRYIPDRVA----------GAAMFAPM 283
A AL Y PDR+ G +MFAPM
Sbjct: 118 ALNFALEY-PDRIGKLILMGPGGLGPSMFAPM 148
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 207 DFGVRLVTFDLPGFGESDP---HPSRNL-NSSALDMLHLANAVGVSDKFWVVGYSSGSMH 262
D G R++ D PGF +SD R L N+ A+ L +A+ + D+ +VG + G
Sbjct: 61 DAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVK--GLMDALDI-DRAHLVGNAMGGAT 117
Query: 263 AWA-ALRYIPDRVA----------GAAMFAPM 283
A AL Y PDR+ G +MFAPM
Sbjct: 118 ALNFALEY-PDRIGKLILMGPGGLGPSMFAPM 148
>pdb|1TIW|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With
L-Tetrahydro-2-Furoic Acid
pdb|1TJ0|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Co-Crystallized With L-Lactate
pdb|1TJ1|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With L-Lactate
pdb|2FZN|A Chain A, Structure Of The E. Coli Puta Proline Dehydrogenase Domain
Reduced By Dithionite And Complexed With Proline
pdb|2FZM|A Chain A, Structure Of The E. Coli Puta Proline Dehydrogenase Domain
Reduced By Dithionite And Complexed With So2
Length = 602
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 16/87 (18%)
Query: 225 PHPS----RNL------NSSALDMLHLANAVGVSDKFWVVGYSSGSMHAWAALRYIPDRV 274
PHP R+L NS+ LD+ + +S + ++ W AL + V
Sbjct: 516 PHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALL-----NSALQKWQALPMLEQPV 570
Query: 275 AGAAMFAPMINPYEPSMTKEEMRRTWE 301
A M +P+INP EPS + +++ E
Sbjct: 571 AAGEM-SPVINPAEPSSSVDKLAAALE 596
>pdb|3ITG|A Chain A, Structure The Proline Utilization A Proline Dehydrogenase
Domain (Puta86-630) Inactivated With N-Propargylglycine
pdb|3ITG|B Chain B, Structure The Proline Utilization A Proline Dehydrogenase
Domain (Puta86-630) Inactivated With N-Propargylglycine
Length = 602
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 16/87 (18%)
Query: 225 PHPS----RNL------NSSALDMLHLANAVGVSDKFWVVGYSSGSMHAWAALRYIPDRV 274
PHP R+L NS+ LD+ + +S + ++ W AL + V
Sbjct: 516 PHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALL-----NSALQKWQALPMLEQPV 570
Query: 275 AGAAMFAPMINPYEPSMTKEEMRRTWE 301
A M +P+INP EPS + +++ E
Sbjct: 571 AAGEM-SPVINPAEPSSSVDKLAAALE 596
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 211 RLVTFDLPGFGESDPHPSRNLNSS---ALDMLHLANAVGVSDKFWVVGYSSGSMHAWAAL 267
R+V FD G G S PH N++ D+ L +GV D++ V G S GS A A
Sbjct: 62 RIVLFDQRGSGRSTPHADLVDNTTWDLVADIERLRTHLGV-DRWQVFGGSWGSTLALAYA 120
Query: 268 RYIPDRVA 275
+ P +V
Sbjct: 121 QTHPQQVT 128
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 209 GVRLVTFDLPGFGES-DPHPSRNLNSSALDMLHLANAVGVSDKFWVV---GYSSGSMHAW 264
G R V DL G G+S P L +A+G+ D V+ G G HA
Sbjct: 56 GYRAVAPDLIGXGDSAKPDIEYRLQDHVAYXDGFIDALGLDDXVLVIHDWGSVIGXRHA- 114
Query: 265 AALRYIPDRVAGAAMFAPMINPYEPSMTKE 294
R PDRVA A ++ P P + E
Sbjct: 115 ---RLNPDRVAAVAFXEALVPPALPXPSYE 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,432,833
Number of Sequences: 62578
Number of extensions: 553918
Number of successful extensions: 1246
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1232
Number of HSP's gapped (non-prelim): 45
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)