BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013464
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PMI|A Chain A, Candida Albicans Phosphomannose Isomerase
Length = 440
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 181/465 (38%), Positives = 239/465 (51%), Gaps = 60/465 (12%)
Query: 7 AARRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDID--KPYAEFWMGTHESGPSF 64
++ +L R+ C Q YDWG+ GS S V++ NS ID KPYAE WMGTH S PS
Sbjct: 1 SSEKLFRIQCGYQNYDWGKIGSSSAVAQFVH-NSDPSITIDETKPYAELWMGTHPSVPSK 59
Query: 65 LXXXXXXXXXXXXXXXXXXXXXXCGEIVSLKSWILKNPN-VLGDKVLHRWGC--DLPFLF 121
+L+ + P LG+ ++ ++G +LPFLF
Sbjct: 60 AIDLNNQ---------------------TLRDLVTAKPQEYLGESIITKFGSSKELPFLF 98
Query: 122 KVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELK 181
KVLS+ K LSIQAHPDK+L LH P Y DDNHKPEMA+A+T+FE C F L +L
Sbjct: 99 KVLSIEKVLSIQAHPDKKLGAQLHAADPKNYPDDNHKPEMAIAVTDFEGFCGFKPLDQLA 158
Query: 182 SVLQNVPEIVELVGSEEANRVL-------HVEMQDGEEKAKFVLQSIFTNLMTASMEMTT 234
L VPE+ E++G E + + V QD K +LQ +F LM ++
Sbjct: 159 KTLATVPELNEIIGQELVDEFISGIKLPAEVGSQDDVNNRK-LLQKVFGKLMNTDDDVIK 217
Query: 235 KATTKLKSRLHKESQVRPLTEKE--QLVLRLEKQYPADIGVI-AAFFFNYVKLNPGQALY 291
+ T KL R +E QV + +L+ RL KQ+P DIG+ N+V LN G+A++
Sbjct: 218 QQTAKLLERTDREPQVFKDIDSRLPELIQRLNKQFPNDIGLFCGCLLLNHVGLNKGEAMF 277
Query: 292 LGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTY------KQGFPEILK 345
L A +PHAYISG+ IECMA SDNVVRAG TPK +DV+ L MLTY KQ P L+
Sbjct: 278 LQAKDPHAYISGDIIECMAASDNVVRAGFTPKFKDVKNLVEMLTYSYESVEKQKMP--LQ 335
Query: 346 GFPLSP----YITRYLPPFDEFEVDCCIL--PKGTSSVFPAVSGPSIFLVTDGEGSMLTA 399
FP S Y PP EF V I KG V ++GPSI + T+G+G++
Sbjct: 336 EFPRSKGDAVKSVLYDPPIAEFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQIT 395
Query: 400 ---SHNDAVAEGDVLFAPANTEINITTSSKLQ-----LYRAGVNS 436
S + G V F + I +T S Q YRA V +
Sbjct: 396 GDDSTKQKIDTGYVFFVAPGSSIELTADSANQDQDFTTYRAFVEA 440
>pdb|2WFP|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase (Apo
Form) From Salmonella Typhimurium
Length = 394
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 117/336 (34%), Positives = 172/336 (51%), Gaps = 55/336 (16%)
Query: 13 RLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLXXXXXXX 72
+L SVQ Y WG S + +++LYG+ + ++ +P AE WMG H S +
Sbjct: 6 KLINSVQNYAWG---SKTALTELYGIANPQQ----QPMAELWMGAHPKSSSRITTAN--- 55
Query: 73 XXXXXXXXXXXXXXXCGEIVSLKSWILKNPN-VLGDKVLHRWGCDLPFLFKVLSVAKALS 131
GE VSL+ I KN +LG+ V +R+G +LPFLFKVL A+ LS
Sbjct: 56 ----------------GETVSLRDAIEKNKTAMLGEAVANRFG-ELPFLFKVLCAAQPLS 98
Query: 132 IQAHPDKE-----LAKTLHKLLP-----NVYKDDNHKPEMALAITEFEALCSFISLQELK 181
IQ HP+K AK +P YKD NHKPE+ A+T F A+ +F ++
Sbjct: 99 IQVHPNKRNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSDIV 158
Query: 182 SVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLK 241
S+LQ V G+ A + H E+ L +F +L+ E ++A LK
Sbjct: 159 SLLQPV------AGAHSA--IAHFLQVPNAER----LSQLFASLLNMQGEEKSRALAVLK 206
Query: 242 SRLHKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYI 301
+ L+ + E Q + + + YP D G+ + N VKLNPG+A++L A PHAY+
Sbjct: 207 AALNSQQ-----GEPWQTIRVISEYYPDDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYL 261
Query: 302 SGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYK 337
G +E MA SDNV+RAGLTPK+ D+ L + + ++
Sbjct: 262 QGVALEVMANSDNVLRAGLTPKYIDIPELVANVKFE 297
>pdb|3H1M|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase (Holo;
Zinc Bound)
pdb|3H1W|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase Bound
With Zinc And Yttrium
pdb|3H1Y|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase From
Salmonella Typhimurium Bound To Substrate (F6p)and Metal
Atom (Zn)
Length = 393
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 117/336 (34%), Positives = 172/336 (51%), Gaps = 55/336 (16%)
Query: 13 RLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLXXXXXXX 72
+L SVQ Y WG S + +++LYG+ + ++ +P AE WMG H S +
Sbjct: 5 KLINSVQNYAWG---SKTALTELYGIANPQQ----QPMAELWMGAHPKSSSRITTAN--- 54
Query: 73 XXXXXXXXXXXXXXXCGEIVSLKSWILKNPN-VLGDKVLHRWGCDLPFLFKVLSVAKALS 131
GE VSL+ I KN +LG+ V +R+G +LPFLFKVL A+ LS
Sbjct: 55 ----------------GETVSLRDAIEKNKTAMLGEAVANRFG-ELPFLFKVLCAAQPLS 97
Query: 132 IQAHPDKE-----LAKTLHKLLP-----NVYKDDNHKPEMALAITEFEALCSFISLQELK 181
IQ HP+K AK +P YKD NHKPE+ A+T F A+ +F ++
Sbjct: 98 IQVHPNKRNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSDIV 157
Query: 182 SVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLK 241
S+LQ V G+ A + H E+ L +F +L+ E ++A LK
Sbjct: 158 SLLQPV------AGAHSA--IAHFLQVPNAER----LSQLFASLLNMQGEEKSRALAVLK 205
Query: 242 SRLHKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYI 301
+ L+ + E Q + + + YP D G+ + N VKLNPG+A++L A PHAY+
Sbjct: 206 AALNSQQ-----GEPWQTIRVISEYYPDDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYL 260
Query: 302 SGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYK 337
G +E MA SDNV+RAGLTPK+ D+ L + + ++
Sbjct: 261 QGVALEVMANSDNVLRAGLTPKYIDIPELVANVKFE 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,038,719
Number of Sequences: 62578
Number of extensions: 465972
Number of successful extensions: 1363
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1346
Number of HSP's gapped (non-prelim): 12
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)