Query 013464
Match_columns 442
No_of_seqs 187 out of 1174
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:07:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2757 Mannose-6-phosphate is 100.0 2E-109 3E-114 809.6 34.0 406 11-439 1-411 (411)
2 PLN02288 mannose-6-phosphate i 100.0 3E-102 7E-107 793.1 39.2 391 11-420 1-393 (394)
3 PRK15131 mannose-6-phosphate i 100.0 4.2E-96 9E-101 750.3 39.7 375 11-433 1-388 (389)
4 PF01238 PMI_typeI: Phosphoman 100.0 2.4E-85 5.1E-90 670.5 21.4 362 11-399 1-371 (373)
5 COG1482 ManA Phosphomannose is 100.0 3.6E-69 7.8E-74 529.3 26.4 294 10-424 2-302 (312)
6 TIGR00218 manA mannose-6-phosp 100.0 4.7E-65 1E-69 508.3 29.3 299 11-433 1-302 (302)
7 PRK11171 hypothetical protein; 98.1 9.8E-05 2.1E-09 72.9 16.2 63 361-423 182-245 (266)
8 TIGR03214 ura-cupin putative a 97.9 0.00013 2.8E-09 71.8 13.1 70 361-430 177-249 (260)
9 PRK13290 ectC L-ectoine syntha 97.8 0.00043 9.3E-09 60.7 12.5 83 356-438 28-112 (125)
10 COG0662 {ManC} Mannose-6-phosp 97.7 0.00038 8.2E-09 61.0 10.7 77 360-436 33-112 (127)
11 TIGR03404 bicupin_oxalic bicup 97.6 0.0025 5.5E-08 65.8 17.0 76 360-435 242-325 (367)
12 PF07883 Cupin_2: Cupin domain 97.6 0.00049 1.1E-08 53.0 9.1 65 368-432 3-70 (71)
13 PF01050 MannoseP_isomer: Mann 97.2 0.003 6.4E-08 57.2 10.1 77 360-436 60-139 (151)
14 COG1917 Uncharacterized conser 96.9 0.007 1.5E-07 52.9 9.2 65 359-423 39-104 (131)
15 COG4297 Uncharacterized protei 96.7 0.0039 8.4E-08 54.8 6.2 56 382-437 63-122 (163)
16 PF06249 EutQ: Ethanolamine ut 96.7 0.005 1.1E-07 55.6 7.1 70 361-437 80-149 (152)
17 PRK15460 cpsB mannose-1-phosph 96.6 0.076 1.6E-06 56.8 15.9 77 360-436 382-461 (478)
18 PF11699 CENP-C_C: Mif2/CENP-C 96.5 0.05 1.1E-06 44.5 11.1 75 355-431 6-83 (85)
19 smart00835 Cupin_1 Cupin. This 96.5 0.032 6.9E-07 49.8 10.7 72 360-431 27-107 (146)
20 PF02311 AraC_binding: AraC-li 96.4 0.017 3.8E-07 49.0 8.1 59 381-439 21-81 (136)
21 PRK09943 DNA-binding transcrip 96.3 0.04 8.7E-07 51.1 10.9 57 381-437 126-184 (185)
22 TIGR03214 ura-cupin putative a 96.2 0.045 9.7E-07 53.9 11.0 71 361-431 56-130 (260)
23 PRK11171 hypothetical protein; 96.1 0.071 1.5E-06 52.7 11.6 74 360-433 58-135 (266)
24 TIGR01479 GMP_PMI mannose-1-ph 95.9 0.24 5.1E-06 52.9 15.3 77 360-436 373-452 (468)
25 PF06339 Ectoine_synth: Ectoin 95.8 0.12 2.5E-06 45.1 10.5 78 359-436 31-110 (126)
26 PF05899 Cupin_3: Protein of u 95.8 0.061 1.3E-06 42.6 7.9 62 360-423 4-66 (74)
27 PRK15457 ethanolamine utilizat 95.3 0.072 1.6E-06 51.2 8.1 57 381-437 173-229 (233)
28 PF04962 KduI: KduI/IolB famil 94.9 0.11 2.4E-06 51.2 8.3 71 367-437 31-110 (261)
29 PF00190 Cupin_1: Cupin; Inte 94.3 0.42 9.1E-06 42.4 9.9 73 361-433 32-118 (144)
30 COG0662 {ManC} Mannose-6-phosp 94.1 0.071 1.5E-06 46.6 4.5 32 281-312 76-112 (127)
31 TIGR02272 gentisate_1_2 gentis 93.6 0.27 5.8E-06 50.2 8.1 55 382-437 269-323 (335)
32 COG4766 EutQ Ethanolamine util 93.4 0.33 7.2E-06 43.6 7.3 48 384-431 119-166 (176)
33 COG3718 IolB Uncharacterized e 93.4 0.6 1.3E-05 44.9 9.5 73 363-437 31-113 (270)
34 COG4101 Predicted mannose-6-ph 93.3 0.051 1.1E-06 46.8 2.0 22 278-299 86-107 (142)
35 PF14525 AraC_binding_2: AraC- 93.0 1.3 2.8E-05 39.4 10.9 78 360-437 31-109 (172)
36 PF12852 Cupin_6: Cupin 92.9 0.55 1.2E-05 43.3 8.5 55 369-423 21-77 (186)
37 PF02041 Auxin_BP: Auxin bindi 92.5 1.4 3.1E-05 39.6 10.0 78 360-437 41-130 (167)
38 PRK13501 transcriptional activ 92.4 0.62 1.4E-05 46.0 8.7 43 381-423 36-78 (290)
39 TIGR03404 bicupin_oxalic bicup 92.3 1.1 2.4E-05 46.4 10.7 75 361-435 65-145 (367)
40 PRK13264 3-hydroxyanthranilate 91.9 1.7 3.8E-05 40.3 10.3 65 353-420 27-95 (177)
41 TIGR03037 anthran_nbaC 3-hydro 91.8 1.6 3.4E-05 39.9 9.7 66 353-421 21-90 (159)
42 PRK04190 glucose-6-phosphate i 91.6 2.7 5.9E-05 39.5 11.5 52 382-433 96-154 (191)
43 PF07883 Cupin_2: Cupin domain 91.4 0.11 2.4E-06 39.6 1.7 21 281-301 38-58 (71)
44 PRK00924 5-keto-4-deoxyuronate 91.3 0.58 1.2E-05 46.4 6.9 53 385-437 76-132 (276)
45 PRK13500 transcriptional activ 91.0 1.1 2.4E-05 45.0 8.8 49 381-429 66-114 (312)
46 COG3257 GlxB Uncharacterized p 90.9 0.99 2.2E-05 43.0 7.7 40 384-423 84-123 (264)
47 PRK13502 transcriptional activ 89.8 1.1 2.3E-05 43.9 7.5 43 381-423 36-78 (282)
48 COG2140 Thermophilic glucose-6 89.8 1.5 3.2E-05 41.7 7.8 56 381-436 101-163 (209)
49 COG3837 Uncharacterized conser 89.7 2.7 5.9E-05 38.1 9.1 65 360-424 39-107 (161)
50 PRK09685 DNA-binding transcrip 88.4 2.5 5.3E-05 41.8 8.9 56 381-436 69-124 (302)
51 PRK10296 DNA-binding transcrip 87.9 1.5 3.2E-05 43.0 6.9 38 381-418 41-78 (278)
52 COG1917 Uncharacterized conser 87.7 0.38 8.3E-06 41.8 2.4 22 280-301 82-103 (131)
53 TIGR02297 HpaA 4-hydroxyphenyl 86.9 1.1 2.5E-05 43.8 5.5 40 383-422 44-83 (287)
54 PLN00212 glutelin; Provisional 86.5 4 8.7E-05 43.9 9.6 67 360-426 77-173 (493)
55 PRK10579 hypothetical protein; 86.2 5.4 0.00012 33.2 8.1 48 376-424 35-84 (94)
56 PF12973 Cupin_7: ChrR Cupin-l 86.1 3.3 7.2E-05 33.7 7.0 67 362-432 23-89 (91)
57 PF01050 MannoseP_isomer: Mann 86.1 0.88 1.9E-05 41.2 3.8 31 282-312 104-139 (151)
58 PRK13290 ectC L-ectoine syntha 85.8 0.65 1.4E-05 40.6 2.8 22 281-302 76-97 (125)
59 PRK13503 transcriptional activ 85.8 2.1 4.6E-05 41.6 6.7 42 380-421 32-73 (278)
60 PF02373 JmjC: JmjC domain, hy 85.7 0.89 1.9E-05 38.0 3.5 29 278-306 79-108 (114)
61 PF04209 HgmA: homogentisate 1 85.5 5.2 0.00011 42.1 9.6 71 363-433 125-196 (424)
62 PF02311 AraC_binding: AraC-li 85.1 0.66 1.4E-05 39.1 2.5 24 280-303 41-64 (136)
63 COG3450 Predicted enzyme of th 84.9 4.8 0.0001 34.8 7.6 63 356-421 38-102 (116)
64 PF06865 DUF1255: Protein of u 83.3 6.8 0.00015 32.6 7.5 48 376-424 35-84 (94)
65 TIGR01479 GMP_PMI mannose-1-ph 83.3 1.8 3.9E-05 46.3 5.3 39 280-318 415-462 (468)
66 TIGR03037 anthran_nbaC 3-hydro 82.3 0.96 2.1E-05 41.3 2.4 23 280-302 70-92 (159)
67 PRK15460 cpsB mannose-1-phosph 82.0 1.8 4E-05 46.3 4.8 39 281-319 425-472 (478)
68 PF08007 Cupin_4: Cupin superf 81.9 0.78 1.7E-05 46.5 1.8 23 279-301 175-197 (319)
69 PF05726 Pirin_C: Pirin C-term 81.8 5.9 0.00013 33.2 6.9 63 367-431 3-67 (104)
70 PF06560 GPI: Glucose-6-phosph 81.4 7.3 0.00016 36.4 7.9 76 360-438 63-148 (182)
71 PRK09943 DNA-binding transcrip 80.9 1.3 2.8E-05 41.0 2.8 23 280-302 146-168 (185)
72 TIGR02272 gentisate_1_2 gentis 80.0 3.9 8.5E-05 41.8 6.1 57 381-437 99-157 (335)
73 PRK13264 3-hydroxyanthranilate 79.8 1.3 2.8E-05 41.1 2.3 23 280-302 76-98 (177)
74 TIGR01015 hmgA homogentisate 1 78.9 12 0.00026 39.4 9.2 55 379-433 144-198 (429)
75 PRK10572 DNA-binding transcrip 78.6 3.5 7.7E-05 40.5 5.2 40 382-421 48-87 (290)
76 PF13621 Cupin_8: Cupin-like d 78.0 1.3 2.7E-05 42.2 1.8 25 278-302 207-231 (251)
77 PRK10371 DNA-binding transcrip 78.0 5.4 0.00012 39.9 6.4 42 381-422 44-85 (302)
78 PF00190 Cupin_1: Cupin; Inte 77.9 1.1 2.5E-05 39.6 1.4 21 283-303 87-107 (144)
79 PRK05341 homogentisate 1,2-dio 77.7 14 0.0003 39.0 9.4 55 379-433 150-205 (438)
80 COG4101 Predicted mannose-6-ph 77.1 7.6 0.00017 33.7 6.0 72 363-434 46-123 (142)
81 PF03079 ARD: ARD/ARD' family; 76.7 7.9 0.00017 35.3 6.5 55 383-437 92-153 (157)
82 PHA02984 hypothetical protein; 75.7 10 0.00022 37.4 7.1 57 382-438 92-155 (286)
83 PF07385 DUF1498: Protein of u 75.6 3 6.5E-05 40.0 3.5 35 279-313 153-191 (225)
84 PF06719 AraC_N: AraC-type tra 74.5 23 0.00049 31.9 8.9 60 359-421 2-61 (155)
85 PLN02658 homogentisate 1,2-dio 73.8 20 0.00044 37.8 9.3 55 379-433 143-198 (435)
86 COG3257 GlxB Uncharacterized p 73.7 37 0.00081 32.7 10.2 64 355-418 172-238 (264)
87 PF05962 HutD: HutD; InterPro 72.9 17 0.00036 33.9 7.8 47 381-427 133-179 (184)
88 PLN00212 glutelin; Provisional 72.6 20 0.00043 38.7 9.2 70 362-431 347-424 (493)
89 PF06052 3-HAO: 3-hydroxyanthr 72.6 2.1 4.6E-05 38.5 1.6 22 280-301 75-96 (151)
90 PRK15457 ethanolamine utilizat 71.9 3.5 7.5E-05 39.9 3.0 23 279-301 192-214 (233)
91 PF11142 DUF2917: Protein of u 71.0 26 0.00056 26.8 7.1 53 370-423 4-58 (63)
92 smart00835 Cupin_1 Cupin. This 70.8 3.5 7.6E-05 36.6 2.7 22 281-302 76-97 (146)
93 PF03079 ARD: ARD/ARD' family; 70.5 2.5 5.4E-05 38.6 1.6 25 279-303 114-138 (157)
94 COG3822 ABC-type sugar transpo 70.0 4.8 0.0001 37.7 3.3 35 279-313 152-190 (225)
95 COG3717 KduI 5-keto 4-deoxyuro 69.9 14 0.00031 35.7 6.6 51 386-436 79-133 (278)
96 PRK04190 glucose-6-phosphate i 69.1 4.1 8.9E-05 38.3 2.8 21 281-301 121-141 (191)
97 PF14499 DUF4437: Domain of un 68.0 48 0.001 32.6 10.0 148 283-433 78-244 (251)
98 COG3435 Gentisate 1,2-dioxygen 67.3 14 0.00031 37.1 6.2 55 383-437 281-335 (351)
99 PHA02890 hypothetical protein; 66.1 22 0.00048 34.8 7.1 51 382-433 91-145 (278)
100 COG3508 HmgA Homogentisate 1,2 64.1 43 0.00093 34.5 9.0 55 379-433 142-197 (427)
101 KOG2107 Uncharacterized conser 62.8 4.9 0.00011 36.8 1.9 21 280-300 116-136 (179)
102 COG3123 Uncharacterized protei 60.1 31 0.00068 28.1 5.8 42 382-423 40-83 (94)
103 COG4297 Uncharacterized protei 59.9 8.6 0.00019 34.2 2.8 47 282-335 87-142 (163)
104 TIGR02451 anti_sig_ChrR anti-s 59.5 27 0.00059 33.3 6.5 57 363-423 127-183 (215)
105 PF05899 Cupin_3: Protein of u 57.8 5.5 0.00012 31.3 1.2 18 280-297 44-61 (74)
106 PRK10572 DNA-binding transcrip 57.4 8.8 0.00019 37.7 2.9 22 281-302 68-89 (290)
107 PF12852 Cupin_6: Cupin 57.4 9.1 0.0002 35.1 2.8 26 280-305 55-80 (186)
108 PRK13501 transcriptional activ 55.5 7.9 0.00017 38.1 2.2 23 280-302 56-78 (290)
109 PRK13502 transcriptional activ 54.2 8.9 0.00019 37.4 2.3 23 280-302 56-78 (282)
110 KOG1356 Putative transcription 53.8 6.4 0.00014 44.4 1.3 34 258-299 785-818 (889)
111 KOG2107 Uncharacterized conser 53.5 7.3 0.00016 35.7 1.4 39 384-422 94-137 (179)
112 PRK13500 transcriptional activ 53.3 9.3 0.0002 38.3 2.3 23 280-302 86-108 (312)
113 PF06052 3-HAO: 3-hydroxyanthr 52.2 1.3E+02 0.0028 27.3 9.0 56 361-418 32-92 (151)
114 COG1791 Uncharacterized conser 50.7 72 0.0016 29.6 7.3 56 382-437 94-156 (181)
115 COG3450 Predicted enzyme of th 49.1 13 0.00029 32.2 2.2 18 280-297 82-99 (116)
116 COG2850 Uncharacterized conser 48.0 9.7 0.00021 39.2 1.5 28 282-312 181-209 (383)
117 PRK10296 DNA-binding transcrip 46.9 14 0.00031 35.9 2.5 21 280-300 61-81 (278)
118 PF06560 GPI: Glucose-6-phosph 46.2 14 0.0003 34.6 2.1 22 280-301 110-131 (182)
119 TIGR02297 HpaA 4-hydroxyphenyl 46.0 14 0.0003 36.1 2.2 22 280-301 62-83 (287)
120 PRK13503 transcriptional activ 45.6 11 0.00024 36.6 1.4 21 281-301 54-74 (278)
121 PF13808 DDE_Tnp_1_assoc: DDE_ 40.6 54 0.0012 26.7 4.6 71 154-239 10-87 (90)
122 COG1741 Pirin-related protein 39.6 3.5E+02 0.0076 27.0 10.9 116 277-398 81-208 (276)
123 PF06249 EutQ: Ethanolamine ut 39.4 17 0.00036 33.0 1.5 20 280-299 113-132 (152)
124 PF09313 DUF1971: Domain of un 39.3 1.9E+02 0.004 23.4 7.4 50 381-430 23-80 (82)
125 PF05523 FdtA: WxcM-like, C-te 38.5 1.1E+02 0.0024 26.7 6.5 42 382-423 53-99 (131)
126 PRK10371 DNA-binding transcrip 37.7 21 0.00046 35.6 2.1 22 281-302 65-86 (302)
127 PF05941 Chordopox_A20R: Chord 34.1 35 0.00076 34.7 2.9 30 280-309 67-98 (334)
128 PRK01712 carbon storage regula 33.2 70 0.0015 24.8 3.8 44 281-332 3-49 (64)
129 KOG2757 Mannose-6-phosphate is 32.7 47 0.001 34.4 3.5 34 281-322 373-408 (411)
130 COG2140 Thermophilic glucose-6 32.1 41 0.00089 32.1 2.9 23 279-301 125-147 (209)
131 TIGR00202 csrA carbon storage 31.6 81 0.0018 24.8 3.9 43 281-332 3-49 (69)
132 cd06408 PB1_NoxR The PB1 domai 30.2 96 0.0021 25.4 4.4 65 91-163 21-85 (86)
133 COG3138 AstA Arginine/ornithin 29.7 15 0.00033 36.6 -0.5 42 114-155 207-252 (336)
134 KOG3706 Uncharacterized conser 29.5 30 0.00065 37.0 1.6 20 281-300 382-401 (629)
135 KOG0721 Molecular chaperone (D 28.4 14 0.0003 35.5 -1.0 13 127-139 120-132 (230)
136 TIGR00218 manA mannose-6-phosp 28.0 48 0.001 33.2 2.8 25 281-305 272-296 (302)
137 KOG0719 Molecular chaperone (D 26.7 78 0.0017 30.9 3.7 13 128-140 36-48 (264)
138 PF07385 DUF1498: Protein of u 25.5 1.9E+02 0.0041 28.0 6.1 41 383-423 136-176 (225)
139 KOG1633 F-box protein JEMMA an 24.3 49 0.0011 37.7 2.3 25 277-301 193-217 (776)
140 PF12973 Cupin_7: ChrR Cupin-l 23.8 61 0.0013 26.1 2.2 21 284-304 62-82 (91)
141 TIGR01221 rmlC dTDP-4-dehydror 23.2 91 0.002 28.9 3.5 34 284-317 102-136 (176)
142 PRK15186 AraC family transcrip 22.0 2E+02 0.0043 28.8 5.9 43 381-423 36-79 (291)
143 PF14499 DUF4437: Domain of un 21.6 2.3E+02 0.0049 27.9 6.0 57 360-418 33-92 (251)
144 COG0220 Predicted S-adenosylme 21.5 13 0.00028 35.9 -2.6 68 89-162 58-137 (227)
145 PF13621 Cupin_8: Cupin-like d 21.3 1.4E+02 0.0031 27.9 4.6 30 402-431 210-241 (251)
No 1
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-109 Score=809.64 Aligned_cols=406 Identities=53% Similarity=0.895 Sum_probs=372.7
Q ss_pred cEEeeccccccccCCCCCchHHHHHh-cCCCCCCCCCCCCceeeeeeecCCCCeEEecCCCCCccccccccCCCCCCCCC
Q 013464 11 LLRLTCSVQKYDWGRTGSDSLVSKLY-GLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVAGAVVNGSSANGGCG 89 (442)
Q Consensus 11 ~~~l~p~~~~y~WG~~~~~sll~~l~-~~~~~~~~~~~~p~aE~W~g~Hp~~pS~v~~~~~~~~~~~~~~~~~~~~~~~~ 89 (442)
|+||+|.+|+|.||+.|++|++++|+ ..+++++|+.++||||+||||||+|||.|..++
T Consensus 1 l~rL~c~Vk~Y~WGk~G~~S~varlaaa~d~~~~id~~~PYAElWMGTH~~Gps~v~~~~-------------------- 60 (411)
T KOG2757|consen 1 LFRLKCHVKQYAWGKKGSESLVARLAAAGDPSFQIDQDKPYAELWMGTHPSGPSHVKETG-------------------- 60 (411)
T ss_pred CceeeeeeeeccccccCcHHHHHHHHHcCCCccccCCCCchHHhhcccCCCccHhhhhcc--------------------
Confidence 68999999999999999999999999 555789999999999999999999999998754
Q ss_pred ccccHHHHHhhCCCcCCchhhhhcCCCCCceeeeeecCCCCccccCCCHHHHHHhcCcCCCCCCCCCCCceeEEEccchh
Q 013464 90 EIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFE 169 (442)
Q Consensus 90 ~~~~L~~li~~~p~~lG~~~~~~~g~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~~~Y~D~n~KpE~w~aLt~f~ 169 (442)
.+|++|+++||+++|+++.++||.+|||||||||++++|||||||||++|+++|.++|.+|||+||||||+||||+|+
T Consensus 61 --~tL~~~l~~nP~~lg~~v~~k~~~~LpFLFKVLSI~k~LSIQaHP~K~lak~LH~~dP~~YpDdNHKPEmAiAlT~Fe 138 (411)
T KOG2757|consen 61 --ETLSQWLAKNPELLGNKVADKFGCDLPFLFKVLSINKPLSIQAHPNKELAKKLHKTDPKHYPDDNHKPEMAIALTPFE 138 (411)
T ss_pred --ccHHHHHhhChhhhcchhHhhcCCCCceeeeEeeecceeeeeecCCHHHHHHHhhhCcccCCCCCCCchheeecchHh
Confidence 499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHhccCcchhhhhcchhhhhhhhhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhccC
Q 013464 170 ALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQ 249 (442)
Q Consensus 170 al~GFr~~~ei~~~L~a~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~L~~~f~~~~~~~~e~~~~~i~~l~~~~~~~~~ 249 (442)
+||||||.+||..+|++.|+++.++|.++..++....+- .++..+..|+.+|+.+|..+++.+++.+.+|+++++.+.+
T Consensus 139 ~LcGFrp~~eI~~~l~~~pe~~~LvGeEa~~q~~~~~~~-e~e~~~~~l~~~Fs~lM~~~~~~i~~~v~~L~~r~~~~~~ 217 (411)
T KOG2757|consen 139 ALCGFRPLEEIKQFLDTIPELRELVGEEAARQLKDLTSH-EDEDSKKVLKLCFSRLMKAEENVIKIQVSKLVKRLQNELN 217 (411)
T ss_pred hhhCccCHHHHHHHHHhChHHHHHhhHHHHHHHHhhccc-hhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999887776554331 2356788999999999999999999999999999987555
Q ss_pred CCCcchHHHHHHHHHhhCCCCcccchhhcceeeECCCCCEEEecCCCceeeecCcEEEEeecCCceEEcCCCCCCCChhH
Q 013464 250 VRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQT 329 (442)
Q Consensus 250 ~~~~~~~~~~~~~l~~~yp~D~G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt~R~glt~k~~dv~~ 329 (442)
.....+..++|++|++|||+|+|+|+++|||++.|+|||++|+.|+.||||++|+|||||+|||||+|+|+|||++|+++
T Consensus 218 ~~~~~d~~eli~~l~kqfP~DIGvfs~~FlN~~~L~PGEA~yL~AnepHAYlsGdcvECMA~SDNvIRAGlTPK~~Dv~t 297 (411)
T KOG2757|consen 218 GFNLTDLEELILKLNKQFPGDIGVFSPFFLNYVRLNPGEAIYLEANEPHAYLSGDCVECMACSDNVIRAGLTPKYIDVDT 297 (411)
T ss_pred ccCcccHHHHHHHHHhhCCCcceeeeHhhhhheecCCCceeeecCCCcceeecCceeEEecccCceeeccCCCccccHHH
Confidence 33345588999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCCC--ccccccccCCCcEEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC-CcEEEeC
Q 013464 330 LCSMLTYKQGF--PEILKGFPLSPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA-SHNDAVA 406 (442)
Q Consensus 330 ll~~l~~~~~~--~~~~~~~~~~~~~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~-~~~~~l~ 406 (442)
|++||+|+... +..+.....++++.+|.||+++|+|.+++++.++++.++..++++|++|++|+|++..+ +..+.++
T Consensus 298 L~smL~Y~~~~~~p~~~~~~~~~~~~~~Y~Ppi~eF~v~~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~~~t~~~~~v~ 377 (411)
T KOG2757|consen 298 LCSMLTYKLTEQQPKLFPRSRLDGYVLLYDPPIEEFAVLETKVPTGESYKFPGVDGPSILLVLKGSGILKTDTDSKILVN 377 (411)
T ss_pred HHhHhcccccccccccCCccCCCCceeEeCCCCcceeEEEeecCCCceEEeecCCCceEEEEEecceEEecCCCCceeec
Confidence 99999999874 33333334457799999999999999999999988888889999999999999999987 7889999
Q ss_pred cccEEEEcCCCcEEEEec-CcEEEEEEEcCCCcc
Q 013464 407 EGDVLFAPANTEINITTS-SKLQLYRAGVNSRFL 439 (442)
Q Consensus 407 ~G~~~~Ipa~~~~~i~~~-~~~~~~~a~~~~~~~ 439 (442)
+|+++||||+..+++.++ ..+.+|||++++||+
T Consensus 378 rG~V~fI~a~~~i~~~~~sd~~~~yrAf~~~r~~ 411 (411)
T KOG2757|consen 378 RGDVLFIPANHPIHLSSSSDPFLGYRAFSNSRFL 411 (411)
T ss_pred cCcEEEEcCCCCceeeccCcceeeeeccccccCC
Confidence 999999999999988874 449999999999864
No 2
>PLN02288 mannose-6-phosphate isomerase
Probab=100.00 E-value=3e-102 Score=793.08 Aligned_cols=391 Identities=70% Similarity=1.151 Sum_probs=344.1
Q ss_pred cEEeeccccccccCCCCCchHHHHHhcCCCCCCCCCCCCceeeeeeecCCCCeEEecCCCCCccccccccCCCCCCCCCc
Q 013464 11 LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVAGAVVNGSSANGGCGE 90 (442)
Q Consensus 11 ~~~l~p~~~~y~WG~~~~~sll~~l~~~~~~~~~~~~~p~aE~W~g~Hp~~pS~v~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (442)
|++|+|.+|+|.||+++.+|+|++|++...++++++++||||+|||+||++||.|.+++ +.
T Consensus 1 m~~L~~~vq~YaWG~~~~~s~ia~l~~~~~~~~~~~~~p~aElW~g~hp~~pS~v~~~~-------------------~~ 61 (394)
T PLN02288 1 MLRLRCAVQNYDWGRIGSESEVARLAAANSGSDVDPDKPYAELWMGTHPSGPSFVVATG-------------------KG 61 (394)
T ss_pred CeeeeCCccccCCCCCChHHHHHHHhcccCCCcCCCCCcEEEEEeeECCCCCeEEeCCC-------------------CC
Confidence 68999999999999999889999999643345677889999999999999999997654 24
Q ss_pred cccHHHHHhhCCCcCCchhhhhcCCCCCceeeeeecCCCCccccCCCHHHHHHhcCcCCCCCCCCCCCceeEEEccchhh
Q 013464 91 IVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEA 170 (442)
Q Consensus 91 ~~~L~~li~~~p~~lG~~~~~~~g~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~~~Y~D~n~KpE~w~aLt~f~a 170 (442)
+++|.++|++||++||....++||++||||+||||++++||||||||+++|+++|+.+|++|||+||||||+||||+|+|
T Consensus 62 ~~~L~~~i~~~~~~lG~~~~~~~~~~lP~L~KvL~a~~~LSIQvHPd~~~A~~~~~~~P~~Y~D~nHKPEm~iALt~F~a 141 (394)
T PLN02288 62 SVLLKEWIAENPAALGDRVVERWGGDLPFLFKVLSVAKALSIQAHPDKKLAEKLHAEQPNVYKDDNHKPEMALALTEFEA 141 (394)
T ss_pred CCcHHHHHHhChhhhCchhhhhccccCceEEEEeecCCCCceeeCCCHHHHHHhcccCccccCCCCCCceeEEEcChHHH
Confidence 68999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHhccCcchhhhhcchhhhhhhhhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhccCC
Q 013464 171 LCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQV 250 (442)
Q Consensus 171 l~GFr~~~ei~~~L~a~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~L~~~f~~~~~~~~e~~~~~i~~l~~~~~~~~~~ 250 (442)
||||||.+||..+|+..|+++.++|.....++........+...++.||++|+.+|+++.+++.+++++|++++......
T Consensus 142 l~GFRp~~ei~~~l~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~f~~lm~~~~~~~~~~~~~l~~~~~~~~~~ 221 (394)
T PLN02288 142 LCGFVTIQELKAVLRTVPELRELVGSEAADQLLALPEHDGEEDVKSVLRSAFTALMTASKDVVTEAVSKLKARLHAESQA 221 (394)
T ss_pred hcCCCCHHHHHHHHHhChHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999997654444433221112236789999999999999999999999999999753221
Q ss_pred CCcchHHHHHHHHHhhCCCCcccchhhcceeeECCCCCEEEecCCCceeeecCcEEEEeecCCceEEcCCCCCCCChhHh
Q 013464 251 RPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTL 330 (442)
Q Consensus 251 ~~~~~~~~~~~~l~~~yp~D~G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt~R~glt~k~~dv~~l 330 (442)
.......++++||+++||+|+|+|+++|||++.|+|||+||+|||++|||++|+|||||+|||||+|+|||||++|++++
T Consensus 222 ~~~~~~~~l~~~L~~~yP~D~G~~~~llLN~v~L~PGeaifl~ag~~HAYl~G~~vE~MA~SDNVlRaGLTpK~~Dv~~L 301 (394)
T PLN02288 222 RELTDKEELVLRLEKQYPGDVGVLSAFFLNYVKLNPGEALYLGANEPHAYLSGECIECMATSDNVVRAGLTPKFRDVQTL 301 (394)
T ss_pred cccchHHHHHHHHHHHCCCCCeeEhhhhhceEecCCCCEEEecCCCCceecCCCeEEeeecCCceeeecCCCccccHHHH
Confidence 12333678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCCccccccccCCCcEEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcE--EEeCcc
Q 013464 331 CSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHN--DAVAEG 408 (442)
Q Consensus 331 l~~l~~~~~~~~~~~~~~~~~~~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~--~~l~~G 408 (442)
++|++|++.++..+.+.+...+...|.+|+++|.|.+++++++....+...++++|++|++|++++..+++. ..+++|
T Consensus 302 ~~~l~f~~~~~~~~~~~~~~~~~~~y~~P~~eF~v~~~~l~~~~~~~~~~~~gp~Illv~~G~~~i~~~~~~~~~~l~~G 381 (394)
T PLN02288 302 CSMLTYKQGFPEILTGVPVDPYTTRYLPPFDEFEVDHCDVPPGASVVFPAVPGPSVFLVIEGEGVLSTGSSEDGTAAKRG 381 (394)
T ss_pred HhhccCccCCcccccccccCCCceEECCCCcceEEEEEEeCCCCeEeecCCCCCEEEEEEcCEEEEecCCccceEEEece
Confidence 999999988877665555445566899999999999999987765555556899999999999999876665 679999
Q ss_pred cEEEEcCCCcEE
Q 013464 409 DVLFAPANTEIN 420 (442)
Q Consensus 409 ~~~~Ipa~~~~~ 420 (442)
+++||||+..+.
T Consensus 382 ~~~fv~a~~~~~ 393 (394)
T PLN02288 382 DVFFVPAGTEIH 393 (394)
T ss_pred eEEEEeCCCccc
Confidence 999999987654
No 3
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=4.2e-96 Score=750.35 Aligned_cols=375 Identities=33% Similarity=0.540 Sum_probs=326.9
Q ss_pred cEEeeccccccccCCCCCchHHHHHhcCCCCCCCCCCCCceeeeeeecCCCCeEEecCCCCCccccccccCCCCCCCCCc
Q 013464 11 LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVAGAVVNGSSANGGCGE 90 (442)
Q Consensus 11 ~~~l~p~~~~y~WG~~~~~sll~~l~~~~~~~~~~~~~p~aE~W~g~Hp~~pS~v~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (442)
|++|+|.+|+|+||++ |.|++++|. +.++++||||+|||+||++||.|.+++ ++
T Consensus 1 ~~~l~~~~q~y~WG~~---s~l~~l~g~----~~~~~~p~aE~W~gaHp~~pS~v~~~~-------------------~~ 54 (389)
T PRK15131 1 MQKMINSVQNYAWGSK---TALTELYGI----ANPDNQPMAELWMGAHPKSSSRVQDAN-------------------GD 54 (389)
T ss_pred CeeeeccccccCCCCH---HHHHHHhCC----CCCCCCceeEEEEEECCCCCeEEeCCC-------------------CC
Confidence 6899999999999986 589999853 345668999999999999999997643 24
Q ss_pred cccHHHHHhhCCC-cCCchhhhhcCCCCCceeeeeecCCCCccccCCCHHHHHHhcCcCC----------CCCCCCCCCc
Q 013464 91 IVSLKSWILKNPN-VLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLP----------NVYKDDNHKP 159 (442)
Q Consensus 91 ~~~L~~li~~~p~-~lG~~~~~~~g~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~----------~~Y~D~n~Kp 159 (442)
+++|+++|++||+ +||....++|| +|||||||||++++||||||||+++|+++|..++ |||+|+||||
T Consensus 55 ~~~L~~~i~~~~~~~LG~~~~~~f~-~lP~L~KiL~a~~~LSIQvHPd~~~A~~~f~~e~~~gip~~~~~r~Y~D~nhKp 133 (389)
T PRK15131 55 IVSLRDVIESDKSALLGEAVAKRFG-ELPFLFKVLCAAQPLSIQVHPNKRAAEIGFAKENAAGIPLDAAERNYKDPNHKP 133 (389)
T ss_pred CCcHHHHHHhCHHHHcCcchhhhcC-CCceEeeeeccCCCceeEeCCCHHHHHHHhhhcccccCccccchhccCCCCCCc
Confidence 7899999999998 99999889997 7999999999999999999999999999986643 9999999999
Q ss_pred eeEEEccchhhhcCCCcHHHHHHHhccCcchhhhhcchhhhhhhhhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013464 160 EMALAITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTK 239 (442)
Q Consensus 160 E~w~aLt~f~al~GFr~~~ei~~~L~a~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~L~~~f~~~~~~~~e~~~~~i~~ 239 (442)
|||||||+|+|||||||.+||..+|++.|++..++..... ..+++.||.+|..+|+++++++++++++
T Consensus 134 Em~~aLt~F~al~GfRp~~ei~~~l~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 201 (389)
T PRK15131 134 ELVFALTPFLAMNAFREFSEIVSLLQPVAGAHPAIAHFLQ------------QPDAERLSELFASLLNMQGEEKSRALAV 201 (389)
T ss_pred eEEEEcchhHHhcCCCcHHHHHHHHHhcchhhHHHHHHhc------------CccHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999999999998877765543211 1367889999999999999999999999
Q ss_pred HHHHhhhccCCCCcchHHHHHHHHHhhCCCCcccchhhcceeeECCCCCEEEecCCCceeeecCcEEEEeecCCceEEcC
Q 013464 240 LKSRLHKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAG 319 (442)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~l~~~yp~D~G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt~R~g 319 (442)
+.+++....+ . ...++.||+++||+|+|+|++++||+++|+|||+||||||++|||++|+++|||||||||||+|
T Consensus 202 l~~~~~~~~~--~---~~~~i~~l~~~~p~D~G~~~~llLN~v~l~pGeaifipAg~~HAyl~G~~iEima~SDnv~RaG 276 (389)
T PRK15131 202 LKSALNSQQG--E---PWQTIRLISEFYPDDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAG 276 (389)
T ss_pred HHHHHHhccc--c---hHHHHHHHHHHCCCCchheehhheeEEEeCCCCEEEeCCCCCeEEcCCeEEEEEecCCcEEecC
Confidence 9999974312 1 3468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHhhccccccCCCccccccccCC-CcEEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe
Q 013464 320 LTPKHRDVQTLCSMLTYKQGFPEILKGFPLS-PYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT 398 (442)
Q Consensus 320 lt~k~~dv~~ll~~l~~~~~~~~~~~~~~~~-~~~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~ 398 (442)
+|+|++|++++++|++|+..++..+...+.. +....|.+|+++|++.++++.++ ...+. .++++|++|++|+++|..
T Consensus 277 lT~K~idv~~ll~~l~f~~~~~~~~~~~~~~~~~~~~~~~p~~~F~~~~~~l~~~-~~~~~-~~~~~Illv~~G~~~i~~ 354 (389)
T PRK15131 277 LTPKYIDIPELVANVKFEAKPANQLLTQPVKQGAELDFPIPVDDFAFSLHDLSDQ-PTTLS-QQSAAILFCVEGEAVLWK 354 (389)
T ss_pred CCCCcccHHHHHhhcCCCCCCchhccccccccCCeEEECCCCCCcEEEEEEECCc-eEEec-CCCcEEEEEEcceEEEEe
Confidence 9999999999999999998877643333322 45678999999999999999653 23333 478999999999999998
Q ss_pred CCcEEEeCcccEEEEcCCCc-EEEEecCcEEEEEEE
Q 013464 399 ASHNDAVAEGDVLFAPANTE-INITTSSKLQLYRAG 433 (442)
Q Consensus 399 ~~~~~~l~~G~~~~Ipa~~~-~~i~~~~~~~~~~a~ 433 (442)
+++++.|++|+++||||+.+ +++.+ ..++++++
T Consensus 355 ~~~~~~l~~G~~~fipa~~~~~~~~g--~~~~~~~~ 388 (389)
T PRK15131 355 GEQQLTLKPGESAFIAANESPVTVSG--HGRLARVY 388 (389)
T ss_pred CCeEEEECCCCEEEEeCCCccEEEec--ccEEEEEe
Confidence 88889999999999999987 88864 56677765
No 4
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=100.00 E-value=2.4e-85 Score=670.46 Aligned_cols=362 Identities=46% Similarity=0.752 Sum_probs=281.3
Q ss_pred cEEeeccccccccCCCCCchHHHHHhcC-CCCCCCCCCCCceeeeeeecCCCCeEEecCCCCCccccccccCCCCCCCCC
Q 013464 11 LLRLTCSVQKYDWGRTGSDSLVSKLYGL-NSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVAGAVVNGSSANGGCG 89 (442)
Q Consensus 11 ~~~l~p~~~~y~WG~~~~~sll~~l~~~-~~~~~~~~~~p~aE~W~g~Hp~~pS~v~~~~~~~~~~~~~~~~~~~~~~~~ 89 (442)
|+||+|.+|+|+||+.|+++.|+++++. .++ +++++||||+|||+||++||.|.+++ +
T Consensus 1 ~~~l~~~~~~y~WG~~Gs~~~l~~l~~~~~~~--~~~~~p~aE~W~g~hp~~ps~v~~~~-------------------l 59 (373)
T PF01238_consen 1 MFKLKPAVQNYIWGKKGSNSRLARLLGKPDPS--IDEDKPYAELWMGAHPNGPSVVANGG-------------------L 59 (373)
T ss_dssp EEEEEEEEEE-TTBEECCCSHHHHHHHHH-TT----TTSCEEEEEES--TTS-EEEECTT-------------------H
T ss_pred CeeeecCcccCccCCCCcccHHHHHhcCCCCc--cccCCccCCEEEEECCCCceEeecCc-------------------c
Confidence 6899999999999977778899999954 232 55679999999999999999998753 1
Q ss_pred ccccHHHHHhhCCCcCCchhhhhcCCCCCceeeeeecCCCCccccCCCHHHHHHhcCcCCCCCCCCCCCceeEEEccchh
Q 013464 90 EIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFE 169 (442)
Q Consensus 90 ~~~~L~~li~~~p~~lG~~~~~~~g~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~~~Y~D~n~KpE~w~aLt~f~ 169 (442)
.+.+|.++++.+++ ....+||.+|||||||||++++||||||||+++|+++|...|++|+|+||||||+||||+|+
T Consensus 60 ~~~~~~~~~~~~~~----~~~~~~~~~lP~L~KvL~~~~~LSiQvHPd~~~A~~l~~~~p~~Y~D~NhKPEm~iALT~F~ 135 (373)
T PF01238_consen 60 QGKILSDPIAELGE----KFGERFGDRLPFLFKVLDAAKPLSIQVHPDKEQAEKLHDADPRNYKDDNHKPEMAIALTPFE 135 (373)
T ss_dssp HHHHHHHHHHHHHH----HHHHHTTSS-SEEEEEEEESS---EEE---HHHHHHCTCCTTCCCHCSCTTTEEEEESS-EE
T ss_pred ccchhhhhHhhhhH----HhhhccccccchhhhhhccCCCcccccCCCHHHHhhhhhcCcccccchhcCCceEEeccchh
Confidence 35567776666655 44456788999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHhccCcchhhhhcchhhhhhhhh---hccccchh--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 013464 170 ALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHV---EMQDGEEK--AKFVLQSIFTNLMTASMEMTTKATTKLKSRL 244 (442)
Q Consensus 170 al~GFr~~~ei~~~L~a~p~~~~~~G~~~~~~~~~~---~~~~~~~~--~~~~L~~~f~~~~~~~~e~~~~~i~~l~~~~ 244 (442)
+||||||.+||..+|+..|++..+++.....++... ......+. .+..|+.+|+.+|+.+.+.+...+..|.+++
T Consensus 136 al~GFRp~~eI~~~l~~~~el~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~l~~a~~~~~~~~~~~L~~~~ 215 (373)
T PF01238_consen 136 ALCGFRPLEEIAEFLKDAPELAELLGGEEAESLEELLSAIEEGDPDELLERPVLKGDFSALMPAGTEHAIEALAALVERQ 215 (373)
T ss_dssp EEEEE--HHHHHHHCCCCHHHHHHHCCCHHCCHHHHHHHHCTTSHHHHHCCCHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred hcccccchhhhhhhcccChhHHHHhhhhhhhhHHHHhhhhhccChhhhhhHHHhhhhhhhccccchHHHHHHHHHHHHhh
Confidence 999999999999999999999999988754433222 11111011 1346999999999999999999999999888
Q ss_pred hhccCCCCcchHHHHHHHHHhhCCCCcccchhhcceeeECCCCCEEEecCCCceeeecCcEEEEeecCCceEEcCCCCCC
Q 013464 245 HKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKH 324 (442)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~yp~D~G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt~R~glt~k~ 324 (442)
+.........+..+++.||+++||+|+|+|+ +|||++.|+|||++|+|||++|||++|+|||||+|||||+|+|||+|+
T Consensus 216 ~~~~~~~~~~d~~~~~~~l~~~yP~D~G~~~-llLN~v~L~pGeaifl~a~~~HAYl~G~~vE~MA~SDNVlRaGLTpK~ 294 (373)
T PF01238_consen 216 QNSDSTYRSYDLARLILRLNEQYPGDVGIFA-LLLNYVELQPGEAIFLPAGEPHAYLSGDCVECMANSDNVLRAGLTPKH 294 (373)
T ss_dssp CC-HCCCHCC-HHHHHHHHHCCSTTTTCHCH-CCEEEEEE-TT-EEEEHTTHHEEEEEEEEEEEEESSEEEEECCSCSSE
T ss_pred hcccccccccccchhhhhhhhhccccCCcEE-EEEEEEEecCCceEEecCCCccccccccceeccccccceeccCCccce
Confidence 7533211122367899999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CChhHhhccccccCCCccccccccC---CCcEEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC
Q 013464 325 RDVQTLCSMLTYKQGFPEILKGFPL---SPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA 399 (442)
Q Consensus 325 ~dv~~ll~~l~~~~~~~~~~~~~~~---~~~~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~ 399 (442)
+|++++++|++|+..++......+. ...+..|.||+++|.+.+++++.+.... .+.++++|++|++|+++|..+
T Consensus 295 iDv~~L~~~l~y~~~~~~~~~~~~~~~~~~~~~~y~pp~~eF~l~~~~l~~g~~~~-~~~~~~~Illv~~G~~~i~~~ 371 (373)
T PF01238_consen 295 IDVPELLEMLTYKPKPPEPAILPPDAPYDSGSVLYGPPVDEFALSRIDLKKGESFI-LPLDGPSILLVTEGSATIIVS 371 (373)
T ss_dssp EEHHHHHHC-EEEEEEGGGCCE--ECCEEECEEEEEESSSSEEEEEEECCTTEEEE-E-TTS-EEEEEEEEEEEEEET
T ss_pred eEHhHheeeeEeeccCCcceeecCccccCCceEEECCCCCeEEEEEEEECCCCeEE-CCCCCceEEEEeCCEEEEEeC
Confidence 9999999999997655433222222 2346789999999999999999776644 456899999999999999864
No 5
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-69 Score=529.32 Aligned_cols=294 Identities=32% Similarity=0.503 Sum_probs=242.8
Q ss_pred ccEEeeccccccccCCCCCchHHHHHhcCCCCCCCCCCCCceeeeeeecCCCCeEEecCCCCCccccccccCCCCCCCCC
Q 013464 10 RLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVAGAVVNGSSANGGCG 89 (442)
Q Consensus 10 ~~~~l~p~~~~y~WG~~~~~sll~~l~~~~~~~~~~~~~p~aE~W~g~Hp~~pS~v~~~~~~~~~~~~~~~~~~~~~~~~ 89 (442)
.|++|+|.+|+|+||+. +|++++|. ++ .++|+||+|+++||++||.|.+++ +
T Consensus 2 ~~~~l~~~l~~~~WGg~----~L~~lfg~----~~-~~~~~gE~W~~AHp~~~S~v~~~~-------------------~ 53 (312)
T COG1482 2 EMLFLTPVLQEYIWGGT----ALADLFGY----DP-PSEPIGELWAGAHPNGPSTVANGP-------------------G 53 (312)
T ss_pred cceecchhheeechhHH----HHHHHhCC----CC-CCCceEeEEEEecCCCCeeEEecC-------------------c
Confidence 58999999999999975 59999953 43 468999999999999999999875 3
Q ss_pred ccccHHHHHhhCCCcCCchhhhhcCCCCCceeeeeecCCCCccccCCCHHHHHHhcCc-----CCCCCCCCCCCceeEEE
Q 013464 90 EIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKL-----LPNVYKDDNHKPEMALA 164 (442)
Q Consensus 90 ~~~~L~~li~~~p~~lG~~~~~~~g~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~-----~~~~Y~D~n~KpE~w~a 164 (442)
++++|++++++++++||+... .+||||+|||||+++|||||||||++|+++++. +.|+|+|+||||||.|+
T Consensus 54 ~~~~L~el~~~~~ellG~~~~----~~FplL~KiLdA~~~LSiQVHP~d~~A~~~~~g~~gkte~w~y~D~~~k~Eli~g 129 (312)
T COG1482 54 QGKSLSELIADPRELLGNKSF----DRFPLLFKILDANDPLSIQVHPSDEYAEEGEEGILGKTECWYYKDANHKPELIYG 129 (312)
T ss_pred CCcCHHHHHhCcHhhcCCcch----hhccceeeeeccCCcceEEECCCHHHHhhcccCccCCCcceeecCCCCCceEEEE
Confidence 689999999944459999854 468899999999999999999999999987543 35999999999999999
Q ss_pred ccchhhhcCCCcHHHHHHHhccCcchhhhhcchhhhhhhhhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 013464 165 ITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRL 244 (442)
Q Consensus 165 Lt~f~al~GFr~~~ei~~~L~a~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~L~~~f~~~~~~~~e~~~~~i~~l~~~~ 244 (442)
+|+. ...| . -+++++.++.
T Consensus 130 ~~~~----------------~~~~-------------------------~---------------~e~l~~~i~~----- 148 (312)
T COG1482 130 LTPA----------------KSKP-------------------------A---------------IEELKEMIDR----- 148 (312)
T ss_pred Echh----------------hcch-------------------------h---------------HHHHHHhhhh-----
Confidence 8650 0000 0 1222221110
Q ss_pred hhccCCCCcchHHHHHHHHHhhCCCCcccchhhcceeeECCCCCEEEecCCCceeeecCcEEEEeecCCceEEcCCCCCC
Q 013464 245 HKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKH 324 (442)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~yp~D~G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt~R~glt~k~ 324 (442)
.|+|.+.+||+++|+|||+|||||||||||++|.++|||||||||||+|+|+|+
T Consensus 149 --------------------------~~~~d~~lLn~v~lkpGe~~fl~Agt~HA~~~G~~lEvmqnSDntyR~yd~~r~ 202 (312)
T COG1482 149 --------------------------GGLFDPLLLNRVKLKPGEAFFLPAGTPHAYLKGLVLEVMQNSDNTYRVYDTDRY 202 (312)
T ss_pred --------------------------ccccchhhhcEEecCCCCEEEecCCCceeeccceEEEEEecCccEEEccccccc
Confidence 244446899999999999999999999999999779999999999999999999
Q ss_pred CChhHhhccccccCCCccccccccC-CCcEEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEE
Q 013464 325 RDVQTLCSMLTYKQGFPEILKGFPL-SPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHND 403 (442)
Q Consensus 325 ~dv~~ll~~l~~~~~~~~~~~~~~~-~~~~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~ 403 (442)
.|+.++.+++.|...+...+...+. ++....|.+|+++|++.++.+.+... .....+++|++|++|++++..+++.+
T Consensus 203 ~d~~~lr~l~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~F~l~~~~i~~~~~--~~~~~~~~il~v~eG~~~l~~~~~~~ 280 (312)
T COG1482 203 DDIGELRELHLFKAKDVITLPTQPRKQGAELTYPVPNEDFALYKWDISGTAE--FIKQESFSILLVLEGEGTLIGGGQTL 280 (312)
T ss_pred ccchhHHhhhhccccchhhcCCcccccCceEEEeccccceEEEEEeccChhh--hccCCCcEEEEEEcCeEEEecCCEEE
Confidence 9999999999999887665433332 35567888899999999999975322 22456999999999999999999999
Q ss_pred EeCcccEEEEcCCCc-EEEEec
Q 013464 404 AVAEGDVLFAPANTE-INITTS 424 (442)
Q Consensus 404 ~l~~G~~~~Ipa~~~-~~i~~~ 424 (442)
.|++|+++||||..+ +++++.
T Consensus 281 ~l~~G~s~~ipa~~~~~~i~g~ 302 (312)
T COG1482 281 KLKKGESFFIPANDGPYTIEGE 302 (312)
T ss_pred EEcCCcEEEEEcCCCcEEEEec
Confidence 999999999999976 999873
No 6
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=100.00 E-value=4.7e-65 Score=508.29 Aligned_cols=299 Identities=29% Similarity=0.398 Sum_probs=243.9
Q ss_pred cEEeeccccccccCCCCCchHHHHHhcCCCCCCCCCCCCceeeeee-ecCCCCeEEecCCCCCccccccccCCCCCCCCC
Q 013464 11 LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMG-THESGPSFLAKKGGAGGVAGAVVNGSSANGGCG 89 (442)
Q Consensus 11 ~~~l~p~~~~y~WG~~~~~sll~~l~~~~~~~~~~~~~p~aE~W~g-~Hp~~pS~v~~~~~~~~~~~~~~~~~~~~~~~~ 89 (442)
+++|+|++++|+|||. .|++++|. +.+ ++++||+|++ +||+++|+|.+++ +
T Consensus 1 ~~~~~p~~~~~~WGG~----~l~~~~g~----~~~-~~~~aE~W~~s~hp~~~S~v~~g~-------------------~ 52 (302)
T TIGR00218 1 PLFIFPVFKERDWGGT----ALADLFGY----SIP-SQQTGECWAGSAHPKGPSTVLNGP-------------------Y 52 (302)
T ss_pred CccccccccccCccHH----HHHHHhCC----CCC-CCCccceEEEEecCCCceEEecCC-------------------c
Confidence 5789999999999984 69998853 333 3689999995 9999999997653 2
Q ss_pred ccccHHHHHhhCCCcCCchhhhhcCCCCCceeeeeecCCCCccccCCCHHHHHHhcCcCCCCCCCCCCCceeEEEccchh
Q 013464 90 EIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFE 169 (442)
Q Consensus 90 ~~~~L~~li~~~p~~lG~~~~~~~g~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~~~Y~D~n~KpE~w~aLt~f~ 169 (442)
++++|.++|+++|++||+...+ +||||+|+||++++|||||||||++|++++.. +.||+|+||+
T Consensus 53 ~g~~L~~~i~~~~~llG~~~~~----~~P~L~KiLda~~~LSIQVHPdD~~a~~~~~~-------~~gk~e~w~i----- 116 (302)
T TIGR00218 53 KGVSLIDLWEKHRELLGRADGD----RFPFLFKVLDAAKPLSIQVHPDDDYAELHEEG-------ELGKTECWYI----- 116 (302)
T ss_pred CCCCHHHHHHhCHHhhCCcccc----cCceEEEEecCCCCceeEECCChHHHHhcccc-------ccccEEEEEe-----
Confidence 4789999999999999987642 59999999999999999999999999987532 3799999998
Q ss_pred hhcCCCcHHHHHHHhccCcchhhhhcchhhhhhhhhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhccC
Q 013464 170 ALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQ 249 (442)
Q Consensus 170 al~GFr~~~ei~~~L~a~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~L~~~f~~~~~~~~e~~~~~i~~l~~~~~~~~~ 249 (442)
+++.++++.++|.... .++++.+++
T Consensus 117 --------------~~~~~~~~~~~g~~~~-----------------------------~~~~~~~~i------------ 141 (302)
T TIGR00218 117 --------------IDCDEAAEIIKGHLKN-----------------------------SKEELWTMI------------ 141 (302)
T ss_pred --------------ecCCccHHhhhcchhc-----------------------------ChHHHHHHH------------
Confidence 5777888888886532 122222111
Q ss_pred CCCcchHHHHHHHHHhhCCCCcccchhhcceeeECCCCCEEEecCCCceeeecCcEEEEeecCCceEEcCCCCCCCChhH
Q 013464 250 VRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQT 329 (442)
Q Consensus 250 ~~~~~~~~~~~~~l~~~yp~D~G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt~R~glt~k~~dv~~ 329 (442)
|.|.|. .+||+++|+|||+|||||||+|||..|.++|||||||||||+|+|+|++|+++
T Consensus 142 --------------------~~g~~~-~~ln~v~v~~Gd~i~ipaGt~HA~~g~~~~Eiq~~SD~t~R~~d~~r~l~ve~ 200 (302)
T TIGR00218 142 --------------------EDGLFK-LLLNRIKLKPGDFFYVPSGTPHAYKGGLVLEVMQNSDNVYRAGDTDKYLDIEK 200 (302)
T ss_pred --------------------hcCcHH-HHhcccccCCCCEEEeCCCCcccccCceEEEEEcCCCcEEEeeccCcccCHHH
Confidence 124444 89999999999999999999999977788999999999999999999999999
Q ss_pred hhccccccCCCccccccccCC-CcEEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcc
Q 013464 330 LCSMLTYKQGFPEILKGFPLS-PYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEG 408 (442)
Q Consensus 330 ll~~l~~~~~~~~~~~~~~~~-~~~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G 408 (442)
+++|++|+..++......+.. +....|.+++++|++.++++.+.. .....++++|++|++|+++|.++++++.+++|
T Consensus 201 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~--~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G 278 (302)
T TIGR00218 201 LVEVLTFPHVPEFHLKGQPQKFGAEILFMVPTEYFSVYKWDISGKA--EFIQQQSALILSVLEGSGRIKSGGKTLPLKKG 278 (302)
T ss_pred HHhhccCCCCCccccccccccCCcEEEEcCCCCCeEEEEEEeCCce--eeccCCCcEEEEEEcceEEEEECCEEEEEecc
Confidence 999999988776543333332 335678888999999999997543 23345789999999999999988889999999
Q ss_pred cEEEEcCCCc-EEEEecCcEEEEEEE
Q 013464 409 DVLFAPANTE-INITTSSKLQLYRAG 433 (442)
Q Consensus 409 ~~~~Ipa~~~-~~i~~~~~~~~~~a~ 433 (442)
+++||||+.+ +++.+ +.+++.++
T Consensus 279 ~~~~ipa~~~~~~i~g--~~~~~~~~ 302 (302)
T TIGR00218 279 ESFFIPAHLGPFTIEG--ECEAIVSH 302 (302)
T ss_pred cEEEEccCCccEEEEe--eEEEEEEC
Confidence 9999999996 99975 56666653
No 7
>PRK11171 hypothetical protein; Provisional
Probab=98.13 E-value=9.8e-05 Score=72.88 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=53.5
Q ss_pred CceEEEEEEeCCCCeeecc-CCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe
Q 013464 361 DEFEVDCCILPKGTSSVFP-AVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT 423 (442)
Q Consensus 361 ~~F~l~~i~~~~~~~~~~~-~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~ 423 (442)
..|.+.++++++|..+... ....-.++.|++|++++..+++.+.|.+||+++++++....+.+
T Consensus 182 ~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~~~~~l~~GD~i~~~~~~~h~~~N 245 (266)
T PRK11171 182 FDMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNNDWVEVEAGDFIWMRAYCPQACYA 245 (266)
T ss_pred CCcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCCEEEEC
Confidence 3479999999988765442 34456899999999999999999999999999999999877776
No 8
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=97.94 E-value=0.00013 Score=71.78 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=53.8
Q ss_pred CceEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEE
Q 013464 361 DEFEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLY 430 (442)
Q Consensus 361 ~~F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~ 430 (442)
.+|.+..+++.+|...-. ..+.-...+.+++|+|.+..+++...+++||+++|||++.-.+.+ +++++.+
T Consensus 177 ~~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l 249 (260)
T TIGR03214 177 FDMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDNNWVPVEAGDYIWMGAYCPQACYAGGRGEFRYL 249 (260)
T ss_pred CCcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECCEEEEecCCCEEEECCCCCEEEEecCCCcEEEE
Confidence 478899999988865421 222335789999999999999999999999999999999855554 4445443
No 9
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=97.80 E-value=0.00043 Score=60.68 Aligned_cols=83 Identities=10% Similarity=0.043 Sum_probs=64.7
Q ss_pred ECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEE-e-CCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEE
Q 013464 356 YLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSML-T-ASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAG 433 (442)
Q Consensus 356 y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~-~-~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~ 433 (442)
+..+...|.+.++.+.+|............+++|++|++++. . +++++.|++||++++|++..-.+++.+++.++.+.
T Consensus 28 ~~~~~~~~~~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~v~ 107 (125)
T PRK13290 28 LKDDGMGFSFHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEVHPIRPGTMYALDKHDRHYLRAGEDMRLVCVF 107 (125)
T ss_pred EecCCCCEEEEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEEEEeCCCeEEEECCCCcEEEEcCCCEEEEEEE
Confidence 344567799999999887543222223357999999999998 6 49999999999999999998778776788888887
Q ss_pred cCCCc
Q 013464 434 VNSRF 438 (442)
Q Consensus 434 ~~~~~ 438 (442)
.|..|
T Consensus 108 tP~~~ 112 (125)
T PRK13290 108 NPPLT 112 (125)
T ss_pred CCCCC
Confidence 76543
No 10
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.70 E-value=0.00038 Score=60.98 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=61.9
Q ss_pred CCceEEEEEEeCCCCeeeccC-CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEec--CcEEEEEEEcCC
Q 013464 360 FDEFEVDCCILPKGTSSVFPA-VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTS--SKLQLYRAGVNS 436 (442)
Q Consensus 360 ~~~F~l~~i~~~~~~~~~~~~-~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~--~~~~~~~a~~~~ 436 (442)
.+.|.+.++.+..+..+.+.. .....+++|++|+|++..+++...|+.||+++||+++.-++++. .++.++....|.
T Consensus 33 ~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~ 112 (127)
T COG0662 33 GDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPP 112 (127)
T ss_pred CCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCC
Confidence 467999999998776543322 23688999999999999999999999999999999999888874 456777766554
No 11
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=97.62 E-value=0.0025 Score=65.77 Aligned_cols=76 Identities=12% Similarity=0.108 Sum_probs=55.6
Q ss_pred CCceEEEEEEeCCCCeeeccCC-CCeEEEEEEcCcEEEEe-----CCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEE
Q 013464 360 FDEFEVDCCILPKGTSSVFPAV-SGPSIFLVTDGEGSMLT-----ASHNDAVAEGDVLFAPANTEINITT--SSKLQLYR 431 (442)
Q Consensus 360 ~~~F~l~~i~~~~~~~~~~~~~-~~~~il~v~~G~~~i~~-----~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~ 431 (442)
...|++.++++..|.....-.+ ..-.++.|++|++++.. ++++..+++||+++||++..-.+++ +++++++.
T Consensus 242 ~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~ 321 (367)
T TIGR03404 242 SKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLE 321 (367)
T ss_pred cceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEE
Confidence 4568888999987754322112 24579999999998874 2457899999999999999866665 45777777
Q ss_pred EEcC
Q 013464 432 AGVN 435 (442)
Q Consensus 432 a~~~ 435 (442)
++-.
T Consensus 322 if~s 325 (367)
T TIGR03404 322 VFKA 325 (367)
T ss_pred EECC
Confidence 7644
No 12
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=97.62 E-value=0.00049 Score=53.02 Aligned_cols=65 Identities=20% Similarity=0.368 Sum_probs=47.8
Q ss_pred EEeCCCCeeeccCCCCe-EEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEE
Q 013464 368 CILPKGTSSVFPAVSGP-SIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRA 432 (442)
Q Consensus 368 i~~~~~~~~~~~~~~~~-~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a 432 (442)
+++.+|........... .+++|++|++++..+++...+++||++++|++....+.+ ++++.++..
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGERVELKPGDAIYIPPGVPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEETTEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEEccEEeEccCCEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 44555544322223334 899999999999999999999999999999999866665 455555544
No 13
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=97.20 E-value=0.003 Score=57.20 Aligned_cols=77 Identities=13% Similarity=0.233 Sum_probs=63.5
Q ss_pred CCceEEEEEEeCCCCeeeccC-CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcCC
Q 013464 360 FDEFEVDCCILPKGTSSVFPA-VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVNS 436 (442)
Q Consensus 360 ~~~F~l~~i~~~~~~~~~~~~-~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~~ 436 (442)
.+.|.+.++.+.+|..+.+-. ......++|++|.+.+..++....+.+|++++||++..-++.+ +.++.++..-.+.
T Consensus 60 ~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq~G~ 139 (151)
T PF01050_consen 60 GEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDEEFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQTGE 139 (151)
T ss_pred cCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCEEEEEcCCCEEEECCCCEEEEECCCCcCcEEEEEecCC
Confidence 567999999999987655432 2457789999999999999999999999999999999988876 4577877766554
No 14
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.87 E-value=0.007 Score=52.89 Aligned_cols=65 Identities=17% Similarity=0.316 Sum_probs=52.9
Q ss_pred CCCceEEEEEEeCCCCeeeccCCC-CeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe
Q 013464 359 PFDEFEVDCCILPKGTSSVFPAVS-GPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT 423 (442)
Q Consensus 359 p~~~F~l~~i~~~~~~~~~~~~~~-~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~ 423 (442)
+...+.+..+.+.+|.....-..+ +..+++|++|.+++..+++...++.||+++||++..-.+.+
T Consensus 39 ~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a 104 (131)
T COG1917 39 EGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGEKKELKAGDVIIIPPGVVHGLKA 104 (131)
T ss_pred CCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCCceEecCCCEEEECCCCeeeecc
Confidence 467788889999888655433444 67999999999999988999999999999999998744433
No 15
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=96.72 E-value=0.0039 Score=54.79 Aligned_cols=56 Identities=23% Similarity=0.343 Sum_probs=48.9
Q ss_pred CCeEEEEEEcCcEEEEeC---CcEEEeCcccEEEEcCCCc-EEEEecCcEEEEEEEcCCC
Q 013464 382 SGPSIFLVTDGEGSMLTA---SHNDAVAEGDVLFAPANTE-INITTSSKLQLYRAGVNSR 437 (442)
Q Consensus 382 ~~~~il~v~~G~~~i~~~---~~~~~l~~G~~~~Ipa~~~-~~i~~~~~~~~~~a~~~~~ 437 (442)
....++.|+.|++.|.-+ |..+.++.||+++|||+++ +++.+|.+++++-||.+-.
T Consensus 63 ~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~rl~sS~DF~VvGaYp~G~ 122 (163)
T COG4297 63 GAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHCRLHSSADFQVVGAYPPGQ 122 (163)
T ss_pred CcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCcccccccCCCCeEEEcccCCcc
Confidence 456799999999999754 5699999999999999999 9999889999999987643
No 16
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=96.71 E-value=0.005 Score=55.61 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=50.0
Q ss_pred CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCCC
Q 013464 361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSR 437 (442)
Q Consensus 361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~~ 437 (442)
-.|+++.-.+ .. ....-.+-+|++|+.+|..+|+.+..++||++|||.+..+++.+.+.++++-+..|..
T Consensus 80 Gf~~le~~~f------~w-tl~YDEi~~VlEG~L~i~~~G~~~~A~~GDvi~iPkGs~I~fst~~~a~~~Yv~yPa~ 149 (152)
T PF06249_consen 80 GFMELEKTSF------PW-TLTYDEIKYVLEGTLEISIDGQTVTAKPGDVIFIPKGSTITFSTPDYARFFYVTYPAN 149 (152)
T ss_dssp EEEEEEEEEE------EE-E-SSEEEEEEEEEEEEEEETTEEEEEETT-EEEE-TT-EEEEEEEEEEEEEEEEESTT
T ss_pred EEEEEeCCCc------cE-EeecceEEEEEEeEEEEEECCEEEEEcCCcEEEECCCCEEEEecCCCEEEEEEECCCc
Confidence 4466665433 21 2345678999999999999999999999999999999999997755666666555543
No 17
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=96.56 E-value=0.076 Score=56.80 Aligned_cols=77 Identities=13% Similarity=0.202 Sum_probs=61.7
Q ss_pred CCceEEEEEEeCCCCeeecc-CCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcCC
Q 013464 360 FDEFEVDCCILPKGTSSVFP-AVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVNS 436 (442)
Q Consensus 360 ~~~F~l~~i~~~~~~~~~~~-~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~~ 436 (442)
...|.+.++++.+|...... ...+-.+++|++|++++.-+++++.|.+||+++||++..-++++ +.+++++.+..+.
T Consensus 382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g~ 461 (478)
T PRK15460 382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSGS 461 (478)
T ss_pred CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCC
Confidence 56799999999887533211 22455899999999999999999999999999999999877776 5678887776553
No 18
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=96.53 E-value=0.05 Score=44.45 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=51.0
Q ss_pred EECCCCCceEEEEEEeCCCCeee-ccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEE
Q 013464 355 RYLPPFDEFEVDCCILPKGTSSV-FPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYR 431 (442)
Q Consensus 355 ~y~~p~~~F~l~~i~~~~~~~~~-~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~ 431 (442)
.+.. +.|+.-.++++++..-. -...+...++.|++|.+.++-.+.+..+.+|++++||++..+.|++ ..++.++-
T Consensus 6 ~f~~--~~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF 83 (85)
T PF11699_consen 6 LFDT--PFFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFF 83 (85)
T ss_dssp E--T--TS-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEE
T ss_pred EcCC--CCceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEE
Confidence 4444 37999999997664322 1234567899999999999999999999999999999999999987 44455543
No 19
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=96.46 E-value=0.032 Score=49.78 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=53.6
Q ss_pred CCceEEEEEEeCCCCeeeccCC-CCeEEEEEEcCcEEEEeCCc------EEEeCcccEEEEcCCCcEEEEe--cCcEEEE
Q 013464 360 FDEFEVDCCILPKGTSSVFPAV-SGPSIFLVTDGEGSMLTASH------NDAVAEGDVLFAPANTEINITT--SSKLQLY 430 (442)
Q Consensus 360 ~~~F~l~~i~~~~~~~~~~~~~-~~~~il~v~~G~~~i~~~~~------~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~ 430 (442)
...+.+.++++.++.......+ ....+++|++|++++...++ ...+++||+++||++....+.+ +.++.++
T Consensus 27 ~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l 106 (146)
T smart00835 27 GLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFV 106 (146)
T ss_pred cCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEE
Confidence 4579999999987764332222 35789999999999976443 7899999999999998755554 4566666
Q ss_pred E
Q 013464 431 R 431 (442)
Q Consensus 431 ~ 431 (442)
.
T Consensus 107 ~ 107 (146)
T smart00835 107 A 107 (146)
T ss_pred E
Confidence 4
No 20
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=96.36 E-value=0.017 Score=49.01 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=41.7
Q ss_pred CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecC--cEEEEEEEcCCCcc
Q 013464 381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSS--KLQLYRAGVNSRFL 439 (442)
Q Consensus 381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~--~~~~~~a~~~~~~~ 439 (442)
.+.+.|.+|++|++++..+++.+.+++|+.++||++....+.... +...+..+.+.+++
T Consensus 21 h~~~~i~~v~~G~~~~~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~~~~~~ 81 (136)
T PF02311_consen 21 HDFYEIIYVLSGEGTLHIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYFSPDFL 81 (136)
T ss_dssp T-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GG
T ss_pred CCCEEEEEEeCCEEEEEECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEECHHHH
Confidence 567999999999999999999999999999999999986665533 67777777766654
No 21
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=96.33 E-value=0.04 Score=51.14 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=47.5
Q ss_pred CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcCCC
Q 013464 381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVNSR 437 (442)
Q Consensus 381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~~~ 437 (442)
+.+..+++|++|++++..+++.+.|+.||++++|++..-.+.+ +.+++++.+..|..
T Consensus 126 h~~~E~~~Vl~G~~~~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~p~~ 184 (185)
T PRK09943 126 HQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTPTT 184 (185)
T ss_pred cCCcEEEEEEEeEEEEEECCEEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeCCCC
Confidence 4668999999999999999999999999999999998855654 45677777766543
No 22
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=96.21 E-value=0.045 Score=53.91 Aligned_cols=71 Identities=13% Similarity=0.259 Sum_probs=54.6
Q ss_pred CceEEEEEEeCCCCeeec-cCCCC-eEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEE
Q 013464 361 DEFEVDCCILPKGTSSVF-PAVSG-PSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYR 431 (442)
Q Consensus 361 ~~F~l~~i~~~~~~~~~~-~~~~~-~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~ 431 (442)
..|.+..+++.++..... ....+ -..++|++|++++..++++..|+.||++++|++...++.+ +.+++++.
T Consensus 56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~ 130 (260)
T TIGR03214 56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGETHELREGGYAYLPPGSKWTLANAQAEDARFFL 130 (260)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEE
Confidence 579999999977532211 11233 5799999999999999999999999999999999988876 34555544
No 23
>PRK11171 hypothetical protein; Provisional
Probab=96.05 E-value=0.071 Score=52.66 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=57.3
Q ss_pred CCceEEEEEEeCCCCeeeccCC--CCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEE
Q 013464 360 FDEFEVDCCILPKGTSSVFPAV--SGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAG 433 (442)
Q Consensus 360 ~~~F~l~~i~~~~~~~~~~~~~--~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~ 433 (442)
...|.+.++++.++........ .+-.+++|++|++++..++++..|..||++++|++...++.+ +..++++.+.
T Consensus 58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~ 135 (266)
T PRK11171 58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGKTHALSEGGYAYLPPGSDWTLRNAGAEDARFHWIR 135 (266)
T ss_pred CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEE
Confidence 5679999999987643221111 346789999999999999999999999999999999877765 4566666553
No 24
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=95.85 E-value=0.24 Score=52.94 Aligned_cols=77 Identities=13% Similarity=0.195 Sum_probs=60.9
Q ss_pred CCceEEEEEEeCCCCeeecc-CCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcCC
Q 013464 360 FDEFEVDCCILPKGTSSVFP-AVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVNS 436 (442)
Q Consensus 360 ~~~F~l~~i~~~~~~~~~~~-~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~~ 436 (442)
.+.|.+.++++.+|...... ....-.+++|++|++++..++++..|++||++++|++..-++.+ +.+++++.+..+.
T Consensus 373 ~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~~ 452 (468)
T TIGR01479 373 GDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSGS 452 (468)
T ss_pred CCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCC
Confidence 46799999999887643211 12344567999999999999999999999999999999877775 5678888877654
No 25
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=95.84 E-value=0.12 Score=45.09 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=63.1
Q ss_pred CCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe--CCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCC
Q 013464 359 PFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT--ASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNS 436 (442)
Q Consensus 359 p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~--~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~ 436 (442)
+---|++....+.+|....+.-.+-...+.|++|+|+|+. .|+...+++|..+.+-....-.+++..++.++.+|.|+
T Consensus 31 DgmGFS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~~dm~~vCVFnPp 110 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAKTDMRLVCVFNPP 110 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEecCCEEEEEEcCCC
Confidence 4456999998888776544444566888999999999986 57899999999999999988778876688888888764
No 26
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=95.77 E-value=0.061 Score=42.56 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=43.8
Q ss_pred CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe-CCcEEEeCcccEEEEcCCCcEEEEe
Q 013464 360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT-ASHNDAVAEGDVLFAPANTEINITT 423 (442)
Q Consensus 360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~-~~~~~~l~~G~~~~Ipa~~~~~i~~ 423 (442)
..-|..-..+..++. ..... ..-..+.|++|+++|+. +|+...+++||++++|++...+...
T Consensus 4 ~g~~~~g~w~~~pg~-~~~~~-~~~E~~~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~w~v 66 (74)
T PF05899_consen 4 DGVFSAGVWECTPGK-FPWPY-PEDEFFYVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGTWEV 66 (74)
T ss_dssp CTSEEEEEEEEECEE-EEEEE-SSEEEEEEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEEEEE
T ss_pred CCCEEEEEEEECCce-eEeeC-CCCEEEEEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEEEEE
Confidence 344666666665543 22221 23677899999999998 6779999999999999998765543
No 27
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=95.33 E-value=0.072 Score=51.21 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=46.5
Q ss_pred CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCCC
Q 013464 381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSR 437 (442)
Q Consensus 381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~~ 437 (442)
.+...+.+|++|+.++..+++++.+++||++|||.+..+++...+..+++....|..
T Consensus 173 l~~dEi~YVLEGe~~l~IdG~t~~l~pGDvlfIPkGs~~hf~tp~~aRflyV~~Pa~ 229 (233)
T PRK15457 173 LNYDEIDMVLEGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTPSSVRFLYVAWPAN 229 (233)
T ss_pred ccceEEEEEEEeEEEEEECCEEEEeCCCcEEEECCCCeEEecCCCCeeEEEEEecCc
Confidence 456889999999999999999999999999999999986775444566655555554
No 28
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=94.86 E-value=0.11 Score=51.19 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=49.0
Q ss_pred EEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCC-cEEEeCcc--------cEEEEcCCCcEEEEecCcEEEEEEEcCCC
Q 013464 367 CCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTAS-HNDAVAEG--------DVLFAPANTEINITTSSKLQLYRAGVNSR 437 (442)
Q Consensus 367 ~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~-~~~~l~~G--------~~~~Ipa~~~~~i~~~~~~~~~~a~~~~~ 437 (442)
.+++..++++.....+.=..+++++|.++++.++ +...+..- ++++||.+..+++.++.+++++++..+..
T Consensus 31 ~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ae~~~~sapa~ 110 (261)
T PF04962_consen 31 VLRLEAGESLEFELERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIFASTDAEFAVCSAPAH 110 (261)
T ss_dssp CEEEECCHCCCCCCCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEESSTEEEEEEEEE-S
T ss_pred EEEecCCCEEeccCCCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEEEEcCCCEEEEEccccC
Confidence 3444456555444333445677889999999987 67777777 99999999999998877899998876544
No 29
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=94.26 E-value=0.42 Score=42.41 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=47.0
Q ss_pred CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEE--eC-C-------cEEE--eCcccEEEEcCCCcEEEEec--Cc
Q 013464 361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSML--TA-S-------HNDA--VAEGDVLFAPANTEINITTS--SK 426 (442)
Q Consensus 361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~--~~-~-------~~~~--l~~G~~~~Ipa~~~~~i~~~--~~ 426 (442)
..+.+..+.++++.....--++...+++|++|++++. .. + .... +++||+++||++....+.+. .+
T Consensus 32 ~~~~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~ 111 (144)
T PF00190_consen 32 NGVAVRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDE 111 (144)
T ss_dssp TTEEEEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSS
T ss_pred cceEEEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCCCC
Confidence 4567777776666432211136899999999999964 22 2 2344 99999999999998667664 34
Q ss_pred EEEEEEE
Q 013464 427 LQLYRAG 433 (442)
Q Consensus 427 ~~~~~a~ 433 (442)
...+.++
T Consensus 112 ~~~~~~f 118 (144)
T PF00190_consen 112 ALVLIIF 118 (144)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 4444443
No 30
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=94.10 E-value=0.071 Score=46.59 Aligned_cols=32 Identities=28% Similarity=0.546 Sum_probs=25.0
Q ss_pred eeECCCCCEEEecCCCceeee-cCc--E--EEEeecC
Q 013464 281 YVKLNPGQALYLGANEPHAYI-SGE--C--IECMATS 312 (442)
Q Consensus 281 ~v~l~pGd~i~ipaGt~HAy~-~G~--~--vEim~~S 312 (442)
.+.|++||++|||+|++|-+- .|. + +||++..
T Consensus 76 ~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~ 112 (127)
T COG0662 76 EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPP 112 (127)
T ss_pred EEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCC
Confidence 456999999999999999864 344 3 5887764
No 31
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=93.58 E-value=0.27 Score=50.17 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=43.3
Q ss_pred CCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCCC
Q 013464 382 SGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSR 437 (442)
Q Consensus 382 ~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~~ 437 (442)
...+|+.|++|+|+..-+++.+.+++||+|.||+-..++..++++.. +..+.+.|
T Consensus 269 T~s~Vf~VieG~G~s~ig~~~~~W~~gD~f~vPsW~~~~h~a~~da~-Lf~~~D~P 323 (335)
T TIGR02272 269 TDATVFCVVEGRGQVRIGDAVFRFSPKDVFVVPSWHPVRFEASDDAV-LFSFSDRP 323 (335)
T ss_pred cccEEEEEEeCeEEEEECCEEEEecCCCEEEECCCCcEecccCCCeE-EEEecCHH
Confidence 34789999999999999999999999999999998777776654543 33334443
No 32
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=93.39 E-value=0.33 Score=43.63 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=39.7
Q ss_pred eEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEE
Q 013464 384 PSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYR 431 (442)
Q Consensus 384 ~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~ 431 (442)
-.+-+|++|...+..++.+...++||.+|||.+..+++...+.++.+-
T Consensus 119 De~d~VlEGrL~V~~~g~tv~a~aGDvifiPKgssIefst~gea~fly 166 (176)
T COG4766 119 DEIDYVLEGRLHVRIDGRTVIAGAGDVIFIPKGSSIEFSTTGEAKFLY 166 (176)
T ss_pred cceeEEEeeeEEEEEcCCeEecCCCcEEEecCCCeEEEeccceEEEEE
Confidence 456789999999999999999999999999999988886644454433
No 33
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=93.37 E-value=0.6 Score=44.91 Aligned_cols=73 Identities=12% Similarity=0.236 Sum_probs=54.7
Q ss_pred eEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCc-------EEE---eCcccEEEEcCCCcEEEEecCcEEEEEE
Q 013464 363 FEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASH-------NDA---VAEGDVLFAPANTEINITTSSKLQLYRA 432 (442)
Q Consensus 363 F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~-------~~~---l~~G~~~~Ipa~~~~~i~~~~~~~~~~a 432 (442)
|.+.++ ..|+++.....+.=.|++++.|.+++...+. +.. =++-++++||++...++++..++++..|
T Consensus 31 F~~~~L--~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~~~vAvC 108 (270)
T COG3718 31 FRLLRL--AAGESATEETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTDLEVAVC 108 (270)
T ss_pred EEEEEc--cCCCcccccCCCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEeecceEEEEE
Confidence 666555 4676666555567789999999999986532 222 3355999999999999988778899998
Q ss_pred EcCCC
Q 013464 433 GVNSR 437 (442)
Q Consensus 433 ~~~~~ 437 (442)
+.|..
T Consensus 109 ~AP~~ 113 (270)
T COG3718 109 SAPGK 113 (270)
T ss_pred eCCCC
Confidence 87753
No 34
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=93.34 E-value=0.051 Score=46.80 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=18.8
Q ss_pred cceeeECCCCCEEEecCCCcee
Q 013464 278 FFNYVKLNPGQALYLGANEPHA 299 (442)
Q Consensus 278 ~Ln~v~l~pGd~i~ipaGt~HA 299 (442)
+=.+..+.|||+||||||+||-
T Consensus 86 LE~ha~~~pGDf~YiPpgVPHq 107 (142)
T COG4101 86 LEEHAEVGPGDFFYIPPGVPHQ 107 (142)
T ss_pred eeeeEEecCCCeEEcCCCCCCc
Confidence 3346679999999999999996
No 35
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=93.00 E-value=1.3 Score=39.37 Aligned_cols=78 Identities=10% Similarity=0.067 Sum_probs=58.1
Q ss_pred CCceEEEEEEeCCCCeeeccC-CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCCC
Q 013464 360 FDEFEVDCCILPKGTSSVFPA-VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSR 437 (442)
Q Consensus 360 ~~~F~l~~i~~~~~~~~~~~~-~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~~ 437 (442)
.....+.++.......+.... .+.+.+.+.++|.+.++.++....+.+|+.++++++..+++..+++.+.+...+|..
T Consensus 31 lg~~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~g~~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l~ip~~ 109 (172)
T PF14525_consen 31 LGGLRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQGGREVELAPGDVVLLDPGQPYRLEFSAGCRQLSLRIPRA 109 (172)
T ss_pred eCCEEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEECCEEEEEcCCeEEEEcCCCCEEEEECCCccEEEEEECHH
Confidence 445677777665443333333 346889999999999999999999999999999999988887665666666555543
No 36
>PF12852 Cupin_6: Cupin
Probab=92.91 E-value=0.55 Score=43.33 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=42.2
Q ss_pred EeCCCCeeeccCCCCeEEEEEEcCcEEEEeC--CcEEEeCcccEEEEcCCCcEEEEe
Q 013464 369 ILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA--SHNDAVAEGDVLFAPANTEINITT 423 (442)
Q Consensus 369 ~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~--~~~~~l~~G~~~~Ipa~~~~~i~~ 423 (442)
++.+.+.+..+......+.+|++|++.+..+ ++.+.|+.||.+++|.+....+..
T Consensus 21 ~~~~~W~~~~~~~~~~~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l~~ 77 (186)
T PF12852_consen 21 ELCGPWGLRFPGSPGASFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVLSS 77 (186)
T ss_pred EEeCCcEEeccCCCceEEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEeCC
Confidence 3344455554444468899999999999854 478999999999999999877753
No 37
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=92.46 E-value=1.4 Score=39.57 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=46.9
Q ss_pred CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC---------CcEEEeCcccEEEEcCCCcEEEEe---cCcE
Q 013464 360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA---------SHNDAVAEGDVLFAPANTEINITT---SSKL 427 (442)
Q Consensus 360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~---------~~~~~l~~G~~~~Ipa~~~~~i~~---~~~~ 427 (442)
.+++.++.-++.+|..--.-....=.+++|++|+|++.-. .+++.+.++++|.||.+..-++.+ .+++
T Consensus 41 mkevEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDl 120 (167)
T PF02041_consen 41 MKEVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDL 120 (167)
T ss_dssp -SSEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-E
T ss_pred ceeeeEEeeeecCCCCCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcce
Confidence 5789999999977643222223455799999999999532 237889999999999999866655 2578
Q ss_pred EEEEEEcCCC
Q 013464 428 QLYRAGVNSR 437 (442)
Q Consensus 428 ~~~~a~~~~~ 437 (442)
+++++....|
T Consensus 121 qvlViiSrpP 130 (167)
T PF02041_consen 121 QVLVIISRPP 130 (167)
T ss_dssp EEEEEEESSS
T ss_pred EEEEEecCCC
Confidence 8887766554
No 38
>PRK13501 transcriptional activator RhaR; Provisional
Probab=92.39 E-value=0.62 Score=45.99 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=38.0
Q ss_pred CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe
Q 013464 381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT 423 (442)
Q Consensus 381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~ 423 (442)
++.+.|+++++|++++..++..+.+.+|+.+|||++.-..+..
T Consensus 36 H~~~ei~~i~~G~~~~~i~~~~~~l~~g~~~~I~p~~~H~~~~ 78 (290)
T PRK13501 36 HQFCEIVIVWRGNGLHVLNDHPYRITCGDVFYIQAADHHSYES 78 (290)
T ss_pred ccceeEEEEecCceEEEECCeeeeecCCeEEEEcCCCcccccc
Confidence 4678999999999999999999999999999999998754443
No 39
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=92.33 E-value=1.1 Score=46.39 Aligned_cols=75 Identities=12% Similarity=0.067 Sum_probs=52.2
Q ss_pred CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe---CCcEE--EeCcccEEEEcCCCcEEEEe-cCcEEEEEEEc
Q 013464 361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT---ASHND--AVAEGDVLFAPANTEINITT-SSKLQLYRAGV 434 (442)
Q Consensus 361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~---~~~~~--~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a~~ 434 (442)
..++..++++..+.....-.+....+++|++|++++.. +++.+ .|++||++++|++..-.+++ +...+++.++-
T Consensus 65 ~~ls~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf~ 144 (367)
T TIGR03404 65 TAIAGVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFD 144 (367)
T ss_pred ccccceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 35788888887664333222456789999999999875 34555 49999999999998755554 34566555444
Q ss_pred C
Q 013464 435 N 435 (442)
Q Consensus 435 ~ 435 (442)
+
T Consensus 145 ~ 145 (367)
T TIGR03404 145 D 145 (367)
T ss_pred C
Confidence 3
No 40
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=91.93 E-value=1.7 Score=40.26 Aligned_cols=65 Identities=15% Similarity=0.263 Sum_probs=46.6
Q ss_pred EEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe--CC--cEEEeCcccEEEEcCCCcEE
Q 013464 353 ITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT--AS--HNDAVAEGDVLFAPANTEIN 420 (442)
Q Consensus 353 ~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~--~~--~~~~l~~G~~~~Ipa~~~~~ 420 (442)
..+|.. .+|.+..+..++. ...+-...+...+.+++|+.+|.. ++ ..+.|+.||.++||+++.-+
T Consensus 27 ~~l~~~--~d~~VmvvgGpn~-r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHs 95 (177)
T PRK13264 27 KQIWQD--SDFIVMVVGGPNA-RTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHS 95 (177)
T ss_pred eeeEcC--CCEEEEEEccCCc-ccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcC
Confidence 445652 4788887654432 222223467889999999999876 55 48999999999999998733
No 41
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=91.81 E-value=1.6 Score=39.89 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=45.0
Q ss_pred EEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe--CCc--EEEeCcccEEEEcCCCcEEE
Q 013464 353 ITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT--ASH--NDAVAEGDVLFAPANTEINI 421 (442)
Q Consensus 353 ~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~--~~~--~~~l~~G~~~~Ipa~~~~~i 421 (442)
..+|. ..+|.+..+.-+ +....+-...+..++.+++|+..|.. +++ .+.|+.||.++||+++..+.
T Consensus 21 ~~l~~--~~~~~v~~vgGp-n~R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP 90 (159)
T TIGR03037 21 QQIWQ--DSEFMVTVVGGP-NARTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSP 90 (159)
T ss_pred eEeec--CCcEEEEEeCCC-CCCcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCccc
Confidence 34564 346777765322 22222223457899999999999943 343 89999999999999987443
No 42
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=91.58 E-value=2.7 Score=39.52 Aligned_cols=52 Identities=17% Similarity=0.223 Sum_probs=39.3
Q ss_pred CCeEEEEEEcCcEEEEeCCc-----EEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEE
Q 013464 382 SGPSIFLVTDGEGSMLTASH-----NDAVAEGDVLFAPANTEINITT--SSKLQLYRAG 433 (442)
Q Consensus 382 ~~~~il~v~~G~~~i~~~~~-----~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~ 433 (442)
+.+.++.|++|++.+..++. ...+++||.++||++..-++.+ +.++.++..+
T Consensus 96 ~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~v~ 154 (191)
T PRK04190 96 DRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLACY 154 (191)
T ss_pred CCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEECCCCCEEEEEEE
Confidence 45789999999999865422 6899999999999999855554 4566665543
No 43
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=91.45 E-value=0.11 Score=39.61 Aligned_cols=21 Identities=38% Similarity=0.724 Sum_probs=19.5
Q ss_pred eeECCCCCEEEecCCCceeee
Q 013464 281 YVKLNPGQALYLGANEPHAYI 301 (442)
Q Consensus 281 ~v~l~pGd~i~ipaGt~HAy~ 301 (442)
.+.+++||++++|+|+.|++.
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~ 58 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVR 58 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEE
T ss_pred EeEccCCEEEEECCCCeEEEE
Confidence 678999999999999999975
No 44
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=91.34 E-value=0.58 Score=46.41 Aligned_cols=53 Identities=9% Similarity=0.240 Sum_probs=44.2
Q ss_pred EEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCc-EEEEe---cCcEEEEEEEcCCC
Q 013464 385 SIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTE-INITT---SSKLQLYRAGVNSR 437 (442)
Q Consensus 385 ~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~-~~i~~---~~~~~~~~a~~~~~ 437 (442)
..++.+.|.++|+.+++++.+.+.|+++||.+.+ +++.+ ..+++++++..|..
T Consensus 76 ~giV~lgG~~~V~vdG~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sAPA~ 132 (276)
T PRK00924 76 LGIINIGGAGTVTVDGETYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSAPAH 132 (276)
T ss_pred EEEEEccceEEEEECCEEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEccccC
Confidence 4678889999999999999999999999999987 77753 24578998887653
No 45
>PRK13500 transcriptional activator RhaR; Provisional
Probab=90.95 E-value=1.1 Score=45.00 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=40.0
Q ss_pred CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEE
Q 013464 381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQL 429 (442)
Q Consensus 381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~ 429 (442)
++.+.|++|++|++++..++..+.+.+|+.++|+++.-..+....+..+
T Consensus 66 H~~~el~~v~~G~g~~~v~~~~~~l~~Gdl~~I~~~~~H~~~~~~~~~~ 114 (312)
T PRK13500 66 HDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHADDKHSYASVNDLVL 114 (312)
T ss_pred cceEEEEEEEcCeEEEEECCEEEeecCCeEEEECCCCeecccccCCceE
Confidence 4568999999999999999999999999999999998754544333333
No 46
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=90.92 E-value=0.99 Score=43.03 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=37.3
Q ss_pred eEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe
Q 013464 384 PSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT 423 (442)
Q Consensus 384 ~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~ 423 (442)
-..++|++|+.++..+|++..|+.|.-+|+|++.+.++++
T Consensus 84 e~~lfVv~Ge~tv~~~G~th~l~eggyaylPpgs~~~~~N 123 (264)
T COG3257 84 ETFLFVVSGEITVKAEGKTHALREGGYAYLPPGSGWTLRN 123 (264)
T ss_pred eEEEEEEeeeEEEEEcCeEEEeccCCeEEeCCCCcceEee
Confidence 4689999999999999999999999999999999988885
No 47
>PRK13502 transcriptional activator RhaR; Provisional
Probab=89.81 E-value=1.1 Score=43.93 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=37.5
Q ss_pred CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe
Q 013464 381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT 423 (442)
Q Consensus 381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~ 423 (442)
.+.+.+++|++|++++..+++++.+++|+.++||++....+..
T Consensus 36 h~~~~l~~v~~G~~~~~i~~~~~~l~~g~l~li~~~~~H~~~~ 78 (282)
T PRK13502 36 HEFCELVMVWRGNGLHVLNERPYRITRGDLFYIRAEDKHSYTS 78 (282)
T ss_pred cceEEEEEEecCcEEEEECCEEEeecCCcEEEECCCCcccccc
Confidence 4568999999999999999999999999999999998644443
No 48
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=89.77 E-value=1.5 Score=41.73 Aligned_cols=56 Identities=29% Similarity=0.447 Sum_probs=41.9
Q ss_pred CCCeEEEEEEcCcEEEEeC---Cc--EEEeCcccEEEEcCCCc-EEEE-ecCcEEEEEEEcCC
Q 013464 381 VSGPSIFLVTDGEGSMLTA---SH--NDAVAEGDVLFAPANTE-INIT-TSSKLQLYRAGVNS 436 (442)
Q Consensus 381 ~~~~~il~v~~G~~~i~~~---~~--~~~l~~G~~~~Ipa~~~-~~i~-~~~~~~~~~a~~~~ 436 (442)
.+.+.|..|++|++.+... |+ +..+++||+++||.+-+ +++. +++++.++..|++.
T Consensus 101 ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~ 163 (209)
T COG2140 101 ADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPAD 163 (209)
T ss_pred CCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCC
Confidence 3456799999999988642 33 67788899999999998 5553 36677777777654
No 49
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=89.68 E-value=2.7 Score=38.14 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=48.0
Q ss_pred CCceEEEEEEeCCCCeeec--cCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCc--EEEEec
Q 013464 360 FDEFEVDCCILPKGTSSVF--PAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTE--INITTS 424 (442)
Q Consensus 360 ~~~F~l~~i~~~~~~~~~~--~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~--~~i~~~ 424 (442)
.+.|-+.-..|++|..-.. .....=..+.||+|++++..++.++.|+.||++=.||+.+ -.+.+.
T Consensus 39 l~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~e~~lrpGD~~gFpAG~~~aHhliN~ 107 (161)
T COG3837 39 LKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGGETRLRPGDSAGFPAGVGNAHHLINR 107 (161)
T ss_pred hhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEECCeeEEecCCceeeccCCCcceeEEeec
Confidence 4668888888876632111 1123356788999999999999999999999999999954 556553
No 50
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=88.38 E-value=2.5 Score=41.78 Aligned_cols=56 Identities=11% Similarity=0.040 Sum_probs=43.8
Q ss_pred CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCC
Q 013464 381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNS 436 (442)
Q Consensus 381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~ 436 (442)
.+.+.++++++|.+.+..++..+.+.+|+.++++++..+.+...+....+...++.
T Consensus 69 ~~~~~l~~~~~G~~~~~~~g~~~~l~~G~~~l~~~~~p~~~~~~~~~~~~~l~i~~ 124 (302)
T PRK09685 69 DAHFFTVFQLSGHAIIEQDDRQVQLAAGDITLIDASRPCSIYPQGLSEQISLLLPR 124 (302)
T ss_pred CCcEEEEEEecceEEEEECCeEEEEcCCCEEEEECCCCcEeecCCCceeEEEEccH
Confidence 34577888999999999999999999999999999887777654455555444443
No 51
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=87.91 E-value=1.5 Score=42.96 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=35.4
Q ss_pred CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCc
Q 013464 381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTE 418 (442)
Q Consensus 381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~ 418 (442)
++.+.|++|++|++++..+++.+.+++|+.++||++.-
T Consensus 41 H~~~ei~~v~~G~~~~~i~~~~~~l~~g~l~~i~p~~~ 78 (278)
T PRK10296 41 HDYYEFTLVLTGRYYQEINGKRVLLERGDFVFIPLGSH 78 (278)
T ss_pred cccEEEEEEEeceEEEEECCEEEEECCCcEEEeCCCCc
Confidence 46799999999999999999999999999999999985
No 52
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=87.71 E-value=0.38 Score=41.82 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=19.2
Q ss_pred eeeECCCCCEEEecCCCceeee
Q 013464 280 NYVKLNPGQALYLGANEPHAYI 301 (442)
Q Consensus 280 n~v~l~pGd~i~ipaGt~HAy~ 301 (442)
....+++||++++|||++|++.
T Consensus 82 ~~~~l~~Gd~i~ip~g~~H~~~ 103 (131)
T COG1917 82 EKKELKAGDVIIIPPGVVHGLK 103 (131)
T ss_pred CceEecCCCEEEECCCCeeeec
Confidence 3456999999999999999985
No 53
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=86.90 E-value=1.1 Score=43.80 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=35.6
Q ss_pred CeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEE
Q 013464 383 GPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINIT 422 (442)
Q Consensus 383 ~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~ 422 (442)
.+.+++|++|.+++..++..+.+++|+.++||++....+.
T Consensus 44 ~~~l~~~~~G~~~~~~~~~~~~l~~g~~~ii~~~~~H~~~ 83 (287)
T TIGR02297 44 YYQLHYLTEGSIALQLDEHEYSEYAPCFFLTPPSVPHGFV 83 (287)
T ss_pred ceeEEEEeeCceEEEECCEEEEecCCeEEEeCCCCccccc
Confidence 4899999999999999999999999999999999864443
No 54
>PLN00212 glutelin; Provisional
Probab=86.52 E-value=4 Score=43.89 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=45.5
Q ss_pred CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC--C----------------------------cEEEeCccc
Q 013464 360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA--S----------------------------HNDAVAEGD 409 (442)
Q Consensus 360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~--~----------------------------~~~~l~~G~ 409 (442)
|.-..+.|+++.++.-.-....+.+.+++|++|+|.+..- | +...+++||
T Consensus 77 caGv~~~R~~i~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GD 156 (493)
T PLN00212 77 CTGVFVIRRVIEPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGD 156 (493)
T ss_pred ccceEEEEEEecCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCC
Confidence 3344577788866543221224679999999999887421 1 125899999
Q ss_pred EEEEcCCCcEEEEecCc
Q 013464 410 VLFAPANTEINITTSSK 426 (442)
Q Consensus 410 ~~~Ipa~~~~~i~~~~~ 426 (442)
++.|||+...-+.++++
T Consensus 157 ViaiPaG~~hw~yN~Gd 173 (493)
T PLN00212 157 VVALPAGVAHWFYNDGD 173 (493)
T ss_pred EEEECCCCeEEEEeCCC
Confidence 99999999866666444
No 55
>PRK10579 hypothetical protein; Provisional
Probab=86.20 E-value=5.4 Score=33.19 Aligned_cols=48 Identities=19% Similarity=0.363 Sum_probs=39.0
Q ss_pred eeccCCCCeEEEEEEcCcEEEEeCC--cEEEeCcccEEEEcCCCcEEEEec
Q 013464 376 SVFPAVSGPSIFLVTDGEGSMLTAS--HNDAVAEGDVLFAPANTEINITTS 424 (442)
Q Consensus 376 ~~~~~~~~~~il~v~~G~~~i~~~~--~~~~l~~G~~~~Ipa~~~~~i~~~ 424 (442)
+.+.+ +.+.+..|++|+.++.-.+ +...++.|++|-|||+..+.++..
T Consensus 35 y~F~T-~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~v~ 84 (94)
T PRK10579 35 YTFST-AEPEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQVA 84 (94)
T ss_pred EEEcC-CCcEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEEEC
Confidence 45543 6789999999999997543 468999999999999999888753
No 56
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=86.15 E-value=3.3 Score=33.68 Aligned_cols=67 Identities=21% Similarity=0.105 Sum_probs=46.3
Q ss_pred ceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEE
Q 013464 362 EFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRA 432 (442)
Q Consensus 362 ~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a 432 (442)
...+..+++.+|..+......+..-++||+|+..-. + ..+.+|+-+..|++...+..+++++.+++.
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d~--~--~~~~~G~~~~~p~g~~h~~~s~~gc~~~vk 89 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHPGGEEILVLEGELSDG--D--GRYGAGDWLRLPPGSSHTPRSDEGCLILVK 89 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEEET--T--CEEETTEEEEE-TTEEEEEEESSCEEEEEE
T ss_pred cCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEEEC--C--ccCCCCeEEEeCCCCccccCcCCCEEEEEE
Confidence 467777778777655433356677889999987753 2 356999999999999877766666777654
No 57
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=86.13 E-value=0.88 Score=41.20 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=24.6
Q ss_pred eECCCCCEEEecCCCceeeec-C--cE--EEEeecC
Q 013464 282 VKLNPGQALYLGANEPHAYIS-G--EC--IECMATS 312 (442)
Q Consensus 282 v~l~pGd~i~ipaGt~HAy~~-G--~~--vEim~~S 312 (442)
..+++||++|||+|+.|.+.. | .+ +|||.-.
T Consensus 104 ~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq~G~ 139 (151)
T PF01050_consen 104 FTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQTGE 139 (151)
T ss_pred EEEcCCCEEEECCCCEEEEECCCCcCcEEEEEecCC
Confidence 458999999999999999863 3 33 6888753
No 58
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=85.84 E-value=0.65 Score=40.64 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.9
Q ss_pred eeECCCCCEEEecCCCceeeec
Q 013464 281 YVKLNPGQALYLGANEPHAYIS 302 (442)
Q Consensus 281 ~v~l~pGd~i~ipaGt~HAy~~ 302 (442)
...|+|||++|+|+|.+|++..
T Consensus 76 ~~~L~aGD~i~~~~~~~H~~~N 97 (125)
T PRK13290 76 VHPIRPGTMYALDKHDRHYLRA 97 (125)
T ss_pred EEEeCCCeEEEECCCCcEEEEc
Confidence 4679999999999999999875
No 59
>PRK13503 transcriptional activator RhaS; Provisional
Probab=85.76 E-value=2.1 Score=41.61 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=37.0
Q ss_pred CCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEE
Q 013464 380 AVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINI 421 (442)
Q Consensus 380 ~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i 421 (442)
.++.+.|++|++|.+++..++..+.+++|+.++||++....+
T Consensus 32 ~H~~~ei~~v~~G~~~~~i~~~~~~l~~g~~~~i~~~~~h~~ 73 (278)
T PRK13503 32 HHDFHEIVIVEHGTGIHVFNGQPYTLSGGTVCFVRDHDRHLY 73 (278)
T ss_pred ccCceeEEEEecCceeeEecCCcccccCCcEEEECCCccchh
Confidence 356799999999999999999999999999999999876433
No 60
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=85.74 E-value=0.89 Score=37.99 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=19.9
Q ss_pred cceeeECCCCCEEEecCCCceeee-cCcEE
Q 013464 278 FFNYVKLNPGQALYLGANEPHAYI-SGECI 306 (442)
Q Consensus 278 ~Ln~v~l~pGd~i~ipaGt~HAy~-~G~~v 306 (442)
=..++.-+|||+|+||||+.|+.. .|.++
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i 108 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDNI 108 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSEE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCceE
Confidence 456888999999999999999944 66664
No 61
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=85.47 E-value=5.2 Score=42.14 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=47.5
Q ss_pred eEEEEEEeCCCC-eeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEE
Q 013464 363 FEVDCCILPKGT-SSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAG 433 (442)
Q Consensus 363 F~l~~i~~~~~~-~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~ 433 (442)
..+..+..+.+- ...+.+.++-.++++-+|+++|.++=..+.+++||.++||.++.+++...++.+.|+.-
T Consensus 125 ~ai~~y~~~~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~G~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E 196 (424)
T PF04209_consen 125 VAIHVYAANASMDDRAFRNADGDELIFPQQGSLRLETEFGRLDVRPGDYVVIPRGTRFRVELPGPARGYIIE 196 (424)
T ss_dssp EEEEEEEE-S---SEEEEESSEEEEEEEEES-EEEEETTEEEEE-TTEEEEE-TT--EEEE-SSSEEEEEEE
T ss_pred cEEEEEEcCCCCCCcceEcCCCCEEEEEEECCEEEEecCeeEEEcCCeEEEECCeeEEEEEeCCCceEEEEE
Confidence 444445444332 12233567888899999999999987889999999999999999888776788887764
No 62
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=85.12 E-value=0.66 Score=39.08 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=16.4
Q ss_pred eeeECCCCCEEEecCCCceeeecC
Q 013464 280 NYVKLNPGQALYLGANEPHAYISG 303 (442)
Q Consensus 280 n~v~l~pGd~i~ipaGt~HAy~~G 303 (442)
....++|||.+++|+|++|++..-
T Consensus 41 ~~~~l~~g~~~li~p~~~H~~~~~ 64 (136)
T PF02311_consen 41 QEYPLKPGDLFLIPPGQPHSYYPD 64 (136)
T ss_dssp EEEEE-TT-EEEE-TTS-EEEEE-
T ss_pred EEEEEECCEEEEecCCccEEEecC
Confidence 457899999999999999998643
No 63
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=84.89 E-value=4.8 Score=34.84 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=42.9
Q ss_pred ECCCCCceEEEEEEeCCCC-eeeccCCCCeEEEEEEcCcEEEEe-CCcEEEeCcccEEEEcCCCcEEE
Q 013464 356 YLPPFDEFEVDCCILPKGT-SSVFPAVSGPSIFLVTDGEGSMLT-ASHNDAVAEGDVLFAPANTEINI 421 (442)
Q Consensus 356 y~~p~~~F~l~~i~~~~~~-~~~~~~~~~~~il~v~~G~~~i~~-~~~~~~l~~G~~~~Ipa~~~~~i 421 (442)
+..+..-+..-..+...|. ... .+....+-+|+|.++++. +|+.+.++.||++++|++...+.
T Consensus 38 ~~~~dg~~~~GiWe~TpG~~r~~---y~~~E~chil~G~v~~T~d~Ge~v~~~aGD~~~~~~G~~g~W 102 (116)
T COG3450 38 YGAPDGQVETGIWECTPGKFRVT---YDEDEFCHILEGRVEVTPDGGEPVEVRAGDSFVFPAGFKGTW 102 (116)
T ss_pred eeCCCCCeeEeEEEecCccceEE---cccceEEEEEeeEEEEECCCCeEEEEcCCCEEEECCCCeEEE
Confidence 3333444555555554442 222 234677789999999986 47789999999999999986433
No 64
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=83.27 E-value=6.8 Score=32.62 Aligned_cols=48 Identities=21% Similarity=0.325 Sum_probs=35.6
Q ss_pred eeccCCCCeEEEEEEcCcEEEEeCC--cEEEeCcccEEEEcCCCcEEEEec
Q 013464 376 SVFPAVSGPSIFLVTDGEGSMLTAS--HNDAVAEGDVLFAPANTEINITTS 424 (442)
Q Consensus 376 ~~~~~~~~~~il~v~~G~~~i~~~~--~~~~l~~G~~~~Ipa~~~~~i~~~ 424 (442)
+.+.+ ..+.+..|++|+.++.-.+ +......|++|-|||+..+.++-.
T Consensus 35 Y~F~T-~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v~ 84 (94)
T PF06865_consen 35 YTFGT-SAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKVK 84 (94)
T ss_dssp EEEEE-SS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEES
T ss_pred EEEcC-CCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEEC
Confidence 44443 5789999999999997643 478899999999999999888764
No 65
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=83.25 E-value=1.8 Score=46.25 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=29.6
Q ss_pred eeeECCCCCEEEecCCCceeee---cCcE--EEEeecC----CceEEc
Q 013464 280 NYVKLNPGQALYLGANEPHAYI---SGEC--IECMATS----DNVVRA 318 (442)
Q Consensus 280 n~v~l~pGd~i~ipaGt~HAy~---~G~~--vEim~~S----Dnt~R~ 318 (442)
..+.|++||++|+|+|++|.+. ...+ +||+..+ |-++|.
T Consensus 415 ~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~~~~~~~d~vr~ 462 (468)
T TIGR01479 415 ETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSGSYLGEDDIIRF 462 (468)
T ss_pred EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCCCCCCCcEEEe
Confidence 4578999999999999999887 2344 5777644 666675
No 66
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=82.34 E-value=0.96 Score=41.28 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.4
Q ss_pred eeeECCCCCEEEecCCCceeeec
Q 013464 280 NYVKLNPGQALYLGANEPHAYIS 302 (442)
Q Consensus 280 n~v~l~pGd~i~ipaGt~HAy~~ 302 (442)
..++|++||.++||+|++|+-.+
T Consensus 70 ~~v~L~eGd~flvP~gvpHsP~r 92 (159)
T TIGR03037 70 EDVPIREGDIFLLPPHVPHSPQR 92 (159)
T ss_pred EEEEECCCCEEEeCCCCCccccc
Confidence 46889999999999999999754
No 67
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=82.03 E-value=1.8 Score=46.34 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=30.1
Q ss_pred eeECCCCCEEEecCCCceeee---cCcE--EEEeecC----CceEEcC
Q 013464 281 YVKLNPGQALYLGANEPHAYI---SGEC--IECMATS----DNVVRAG 319 (442)
Q Consensus 281 ~v~l~pGd~i~ipaGt~HAy~---~G~~--vEim~~S----Dnt~R~g 319 (442)
.+.|.|||++++|+|++|.|- ...+ |||+.-+ |-.+|..
T Consensus 425 ~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g~yl~edDivr~~ 472 (478)
T PRK15460 425 IKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSGSYLEEDDVVRFA 472 (478)
T ss_pred EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCCCCCCCcEEEee
Confidence 478999999999999999765 3445 5887765 6667753
No 68
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=81.86 E-value=0.78 Score=46.46 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=15.7
Q ss_pred ceeeECCCCCEEEecCCCceeee
Q 013464 279 FNYVKLNPGQALYLGANEPHAYI 301 (442)
Q Consensus 279 Ln~v~l~pGd~i~ipaGt~HAy~ 301 (442)
.-.+.|+|||.+|||.|++|.-.
T Consensus 175 ~~~~~L~pGD~LYlPrG~~H~~~ 197 (319)
T PF08007_consen 175 VEEVVLEPGDVLYLPRGWWHQAV 197 (319)
T ss_dssp SEEEEE-TT-EEEE-TT-EEEEE
T ss_pred eEEEEECCCCEEEECCCccCCCC
Confidence 33678999999999999999844
No 69
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=81.85 E-value=5.9 Score=33.20 Aligned_cols=63 Identities=17% Similarity=0.259 Sum_probs=41.1
Q ss_pred EEEeCCCCeeecc-CCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEec-CcEEEEE
Q 013464 367 CCILPKGTSSVFP-AVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTS-SKLQLYR 431 (442)
Q Consensus 367 ~i~~~~~~~~~~~-~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~-~~~~~~~ 431 (442)
-++++++.++.++ +.+.-..+.|++|++++.. +...+..|+.+++..+..+++++. .+.+++.
T Consensus 3 di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~~--~~~~~~~~~~~~l~~g~~i~~~a~~~~a~~ll 67 (104)
T PF05726_consen 3 DIKLEPGASFTLPLPPGHNAFIYVLEGSVEVGG--EEDPLEAGQLVVLEDGDEIELTAGEEGARFLL 67 (104)
T ss_dssp EEEE-TT-EEEEEEETT-EEEEEEEESEEEETT--TTEEEETTEEEEE-SECEEEEEESSSSEEEEE
T ss_pred EEEECCCCEEEeecCCCCEEEEEEEECcEEECC--CcceECCCcEEEECCCceEEEEECCCCcEEEE
Confidence 3556666555443 2345678899999988754 336799999999996667888875 5566554
No 70
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=81.42 E-value=7.3 Score=36.40 Aligned_cols=76 Identities=21% Similarity=0.242 Sum_probs=39.9
Q ss_pred CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe---CC----c--EEEeCcccEEEEcCCCc-EEEEecCcEEE
Q 013464 360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT---AS----H--NDAVAEGDVLFAPANTE-INITTSSKLQL 429 (442)
Q Consensus 360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~---~~----~--~~~l~~G~~~~Ipa~~~-~~i~~~~~~~~ 429 (442)
..+|...+=++.+... ...+.+.++.|++|+|.+-- ++ + .+.+++|+.++||++.. .+|..+..--+
T Consensus 63 G~E~~~T~GH~H~~~~---~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~ 139 (182)
T PF06560_consen 63 GGEYFMTKGHYHPISP---CGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTGDEPLV 139 (182)
T ss_dssp TTEE-B---BB-SS-------TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EE
T ss_pred CCccccCCCccCCccc---cCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEECCCCcEE
Confidence 3556555555433221 12467999999999999852 23 2 47799999999999998 77765433344
Q ss_pred EEEEcCCCc
Q 013464 430 YRAGVNSRF 438 (442)
Q Consensus 430 ~~a~~~~~~ 438 (442)
+.+.++.+|
T Consensus 140 ~~~~~~~~~ 148 (182)
T PF06560_consen 140 FAAWVPRDA 148 (182)
T ss_dssp EEEEEETT-
T ss_pred EEEEEecCC
Confidence 445555554
No 71
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=80.93 E-value=1.3 Score=40.97 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.3
Q ss_pred eeeECCCCCEEEecCCCceeeec
Q 013464 280 NYVKLNPGQALYLGANEPHAYIS 302 (442)
Q Consensus 280 n~v~l~pGd~i~ipaGt~HAy~~ 302 (442)
..+.|++||++++|++++|.|-.
T Consensus 146 ~~~~l~~Gd~~~~~~~~~H~~~n 168 (185)
T PRK09943 146 QDYHLVAGQSYAINTGIPHSFSN 168 (185)
T ss_pred EEEEecCCCEEEEcCCCCeeeeC
Confidence 55679999999999999999764
No 72
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=79.99 E-value=3.9 Score=41.84 Aligned_cols=57 Identities=12% Similarity=0.295 Sum_probs=41.2
Q ss_pred CCCeEEEEEEcCcEE-EEeCCcEEEeCcccEEEEcCCCcEEEEec-CcEEEEEEEcCCC
Q 013464 381 VSGPSIFLVTDGEGS-MLTASHNDAVAEGDVLFAPANTEINITTS-SKLQLYRAGVNSR 437 (442)
Q Consensus 381 ~~~~~il~v~~G~~~-i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~-~~~~~~~a~~~~~ 437 (442)
+....|.+|++|+|. ...+++.+.+++||.|++|+..-..-.++ +...++..+.+.|
T Consensus 99 ht~sAl~~vveG~G~~t~V~g~~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~lD~P 157 (335)
T TIGR02272 99 HTQSALRFIVEGKGAFTAVDGERTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGLDIP 157 (335)
T ss_pred cccceEEEEEEcCceEEEECCEEEeeeCCCEEEeCCCeeEecccCCCCcEEEEecCCHH
Confidence 356789999999995 45688999999999999999876554443 3334454455544
No 73
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=79.84 E-value=1.3 Score=41.14 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.1
Q ss_pred eeeECCCCCEEEecCCCceeeec
Q 013464 280 NYVKLNPGQALYLGANEPHAYIS 302 (442)
Q Consensus 280 n~v~l~pGd~i~ipaGt~HAy~~ 302 (442)
..+.|++||.++||+|++|+-..
T Consensus 76 ~~v~L~eGd~fllP~gvpHsP~r 98 (177)
T PRK13264 76 RDVPIREGEMFLLPPHVPHSPQR 98 (177)
T ss_pred eeEEECCCCEEEeCCCCCcCCcc
Confidence 35789999999999999999754
No 74
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=78.87 E-value=12 Score=39.43 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=45.2
Q ss_pred cCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEE
Q 013464 379 PAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAG 433 (442)
Q Consensus 379 ~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~ 433 (442)
.+.++=-++++-+|.+.|.++=..+.+++||.++||-++.+++...+..+.|++-
T Consensus 144 ~NaDGD~Livpq~G~l~i~TEfG~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E 198 (429)
T TIGR01015 144 YNADGDFLIVPQQGALLITTEFGRLLVEPNEICVIPRGVRFRVTVLEPARGYICE 198 (429)
T ss_pred eccCCCEEEEEEeCcEEEEEeccceEecCCCEEEecCccEEEEeeCCCceEEEEe
Confidence 3567778888999999999876789999999999999998888755566666654
No 75
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=78.62 E-value=3.5 Score=40.51 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=35.4
Q ss_pred CCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEE
Q 013464 382 SGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINI 421 (442)
Q Consensus 382 ~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i 421 (442)
.++.+.++++|.+++..+++.+.+++|+.+++|++....+
T Consensus 48 ~~~~i~~~~~G~~~~~~~~~~~~~~~g~~i~i~p~~~h~~ 87 (290)
T PRK10572 48 KGYILNLTIRGQGVIFNGGRAFVCRPGDLLLFPPGEIHHY 87 (290)
T ss_pred cceEEEEEEeccEEEecCCeeEecCCCCEEEECCCCceee
Confidence 4678889999999999999999999999999999986443
No 76
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=78.04 E-value=1.3 Score=42.17 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=18.0
Q ss_pred cceeeECCCCCEEEecCCCceeeec
Q 013464 278 FFNYVKLNPGQALYLGANEPHAYIS 302 (442)
Q Consensus 278 ~Ln~v~l~pGd~i~ipaGt~HAy~~ 302 (442)
-.-.+.|+|||++|||+|-.|....
T Consensus 207 ~~~~~~l~pGD~LfiP~gWwH~V~~ 231 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPPGWWHQVEN 231 (251)
T ss_dssp -EEEEEEETT-EEEE-TT-EEEEEE
T ss_pred ceeEEEECCCeEEEECCCCeEEEEE
Confidence 3567899999999999999999643
No 77
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=78.03 E-value=5.4 Score=39.88 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=37.5
Q ss_pred CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEE
Q 013464 381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINIT 422 (442)
Q Consensus 381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~ 422 (442)
++.+.|.++++|.+.+..+++.+.+++|+.++|+++....+.
T Consensus 44 H~e~Ei~yv~~G~~~~~i~g~~~~l~~Gd~ili~s~~~H~~~ 85 (302)
T PRK10371 44 HGQVEVNVPFDGDVEYLINNEKVQINQGHITLFWACTPHQLT 85 (302)
T ss_pred cccEEEEEecCCcEEEEECCEEEEEcCCcEEEEecCCccccc
Confidence 567999999999999999999999999999999999875443
No 78
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=77.88 E-value=1.1 Score=39.60 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=17.4
Q ss_pred ECCCCCEEEecCCCceeeecC
Q 013464 283 KLNPGQALYLGANEPHAYISG 303 (442)
Q Consensus 283 ~l~pGd~i~ipaGt~HAy~~G 303 (442)
.+++||+++||+|.+|.+...
T Consensus 87 ~l~~Gdv~~vP~G~~h~~~n~ 107 (144)
T PF00190_consen 87 RLKAGDVFVVPAGHPHWIIND 107 (144)
T ss_dssp EEETTEEEEE-TT-EEEEEEC
T ss_pred eeecccceeeccceeEEEEcC
Confidence 699999999999999998765
No 79
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=77.72 E-value=14 Score=39.04 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=45.8
Q ss_pred cCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe-cCcEEEEEEE
Q 013464 379 PAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT-SSKLQLYRAG 433 (442)
Q Consensus 379 ~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a~ 433 (442)
.+.++=-++++-+|.+.|.++=..+.+++||.++||-++.+++.- ++..+.|++-
T Consensus 150 ~NaDGD~Livpq~G~l~i~TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E 205 (438)
T PRK05341 150 YNADGELLIVPQQGRLRLATELGVLDVEPGEIAVIPRGVKFRVELPDGPARGYVCE 205 (438)
T ss_pred ecCCCCEEEEEEeCCEEEEEeccceEecCCCEEEEcCccEEEEecCCCCeeEEEEE
Confidence 456777888899999999987778999999999999999988874 5677777654
No 80
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=77.06 E-value=7.6 Score=33.73 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=47.1
Q ss_pred eEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEeCC---cEEEeCcccEEEEcCCCc-EEEEe-cCcEEEEEEEc
Q 013464 363 FEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLTAS---HNDAVAEGDVLFAPANTE-INITT-SSKLQLYRAGV 434 (442)
Q Consensus 363 F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~~~---~~~~l~~G~~~~Ipa~~~-~~i~~-~~~~~~~~a~~ 434 (442)
-.+..++++.|.+-.- -...--+.+.|++|++..-.++ +...++.||-|+||++.. ..+.. +..+..++|..
T Consensus 46 i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIaRs 123 (142)
T COG4101 46 ICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIARS 123 (142)
T ss_pred eeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEEcc
Confidence 4555666665533210 0112345678999999997763 478899999999999986 33322 45677777665
No 81
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=76.68 E-value=7.9 Score=35.27 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=36.9
Q ss_pred CeEEEEEEcCcEEEEe--C-Cc--EEEeCcccEEEEcCCCcEEEE--ecCcEEEEEEEcCCC
Q 013464 383 GPSIFLVTDGEGSMLT--A-SH--NDAVAEGDVLFAPANTEINIT--TSSKLQLYRAGVNSR 437 (442)
Q Consensus 383 ~~~il~v~~G~~~i~~--~-~~--~~~l~~G~~~~Ipa~~~~~i~--~~~~~~~~~a~~~~~ 437 (442)
.-.|-++++|+|-... . +. ++.+.+||-+.|||++.-+++ .+..++++|-|...+
T Consensus 92 deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~~~ 153 (157)
T PF03079_consen 92 DEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKDEP 153 (157)
T ss_dssp S-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESSCG
T ss_pred hheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecCCC
Confidence 4567788888887753 2 22 478999999999999984444 355788888876654
No 82
>PHA02984 hypothetical protein; Provisional
Probab=75.66 E-value=10 Score=37.41 Aligned_cols=57 Identities=19% Similarity=0.220 Sum_probs=40.6
Q ss_pred CCeEEEEEEcCcEEEEeCC----cEEEeCcccEEEEcCCCcEEEEe-cCcEEEEE--EEcCCCc
Q 013464 382 SGPSIFLVTDGEGSMLTAS----HNDAVAEGDVLFAPANTEINITT-SSKLQLYR--AGVNSRF 438 (442)
Q Consensus 382 ~~~~il~v~~G~~~i~~~~----~~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~--a~~~~~~ 438 (442)
.....++|++|+.+|.+.. .+..+++||+|++--++...+.+ ..++.+++ ..+..||
T Consensus 92 nEy~FvlCl~G~~~I~~~~~~~~is~~I~kGeaf~md~~t~h~i~T~~knl~L~Vi~y~v~~pf 155 (286)
T PHA02984 92 NEYMFVLCLNGKTSIECFNKGSKITNTIKKGEAFTLNLKTKYVTTTKDKNLHLAVITYTSNCPF 155 (286)
T ss_pred ccEEEEEEcCCeEEEEEecCCceeeeEEecCceEEEEccceEEEEeCCCceEEEEEEEEecceE
Confidence 3467788999999998642 27889999999999999855543 44565554 3344444
No 83
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=75.59 E-value=3 Score=40.00 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=23.0
Q ss_pred ceeeECCCCCEEEecCCCceeee--cCcE-E-EEeecCC
Q 013464 279 FNYVKLNPGQALYLGANEPHAYI--SGEC-I-ECMATSD 313 (442)
Q Consensus 279 Ln~v~l~pGd~i~ipaGt~HAy~--~G~~-v-Eim~~SD 313 (442)
-..+.|+|||+|-|++|+-|+.- +|.+ | ||..++|
T Consensus 153 G~~l~L~PGESiTL~Pg~yH~Fw~e~g~vLigEVStvND 191 (225)
T PF07385_consen 153 GTQLRLNPGESITLPPGIYHWFWGEGGDVLIGEVSTVND 191 (225)
T ss_dssp T-EEEE-TT-EEEE-TTEEEEEEE-TTSEEEEEEEE---
T ss_pred CceEEeCCCCeEeeCCCCeeeEEecCCCEEEEeeecccC
Confidence 45678999999999999999954 4555 5 9988854
No 84
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=74.55 E-value=23 Score=31.86 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=44.9
Q ss_pred CCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEE
Q 013464 359 PFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINI 421 (442)
Q Consensus 359 p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i 421 (442)
+.+...+.|.+-..... ...-.+++++|++|+=++..+++.+....|+.++.+....+..
T Consensus 2 ~ipgl~i~r~~~~~~~~---~~~y~p~i~~vlQG~K~~~~g~~~~~Y~~g~~lv~~~~lPv~~ 61 (155)
T PF06719_consen 2 PIPGLSIFRSSRPTPPM---PCVYEPSICIVLQGSKRVHLGDQVFEYDAGQYLVSSVDLPVES 61 (155)
T ss_pred CCCCEEEEEECCCCCCc---ceecCCeEEEEEeeeEEEEECCceEEecCCcEEEecCCCcEEE
Confidence 34556666665332211 2345689999999999998889999999999999999987544
No 85
>PLN02658 homogentisate 1,2-dioxygenase
Probab=73.77 E-value=20 Score=37.81 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=45.1
Q ss_pred cCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe-cCcEEEEEEE
Q 013464 379 PAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT-SSKLQLYRAG 433 (442)
Q Consensus 379 ~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a~ 433 (442)
.+.++=-++++-+|.+.|.++=..+.+++||.++||-++.+++.- ++..+.|++-
T Consensus 143 ~NaDGD~Livpq~G~l~i~TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E 198 (435)
T PLN02658 143 CNADGDFLIVPQQGRLWIKTELGKLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLE 198 (435)
T ss_pred ecCCCCEEEEEEeCCEEEEEeccceEecCCCEEEecCccEEEEecCCCCeeEEEEe
Confidence 355777788889999999987778999999999999999988874 5566666643
No 86
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=73.72 E-value=37 Score=32.67 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=45.2
Q ss_pred EECCC--CCceEEEEEEeCCCCeeeccCCC-CeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCc
Q 013464 355 RYLPP--FDEFEVDCCILPKGTSSVFPAVS-GPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTE 418 (442)
Q Consensus 355 ~y~~p--~~~F~l~~i~~~~~~~~~~~~~~-~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~ 418 (442)
.+.|. .-+|.+..+++.+|.++-+-... -=.=+.|++|++.-+-++.-+.++.||.+++-|-+.
T Consensus 172 tv~P~d~r~Dmhv~ivsFePGa~ip~aEtHvmEHGlyvLeGk~vYrLn~dwv~V~aGD~mwm~A~cp 238 (264)
T COG3257 172 TVLPKELRFDMHVHIVSFEPGASIPYAETHVMEHGLYVLEGKGVYRLNNNWVPVEAGDYIWMGAYCP 238 (264)
T ss_pred eeCccccCcceEEEEEEecCCcccchhhhhhhhcceEEEecceEEeecCceEEeecccEEEeeccCh
Confidence 35552 44677777888777543221111 123478999999988778889999999999999885
No 87
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=72.85 E-value=17 Score=33.92 Aligned_cols=47 Identities=17% Similarity=0.343 Sum_probs=34.2
Q ss_pred CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcE
Q 013464 381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKL 427 (442)
Q Consensus 381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~ 427 (442)
.....+++|++|+..+..+++...|.+||++++.....+.+.+.+.+
T Consensus 133 ~~~~~l~~~~~G~~~i~~~~~~~~L~~~d~l~~~~~~~~~l~~~g~l 179 (184)
T PF05962_consen 133 AASTVLVYVLEGAWSITEGGNCISLSAGDLLLIDDEEDLPLTGDGQL 179 (184)
T ss_dssp --SEEEEEESSS-EEECCCEEEEEE-TT-EEEEESEECEEEEEECCE
T ss_pred CCCEEEEEEeeCcEEEecCCCceEcCCCCEEEEeCCCceEecCCeeE
Confidence 35678899999998887666789999999999998766877764443
No 88
>PLN00212 glutelin; Provisional
Probab=72.60 E-value=20 Score=38.65 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=45.8
Q ss_pred ceEEEEEEeCCCCeee-ccCCCCeEEEEEEcCcEEEEe---CCc---EEEeCcccEEEEcCCCcEEEEe-cCcEEEEE
Q 013464 362 EFEVDCCILPKGTSSV-FPAVSGPSIFLVTDGEGSMLT---ASH---NDAVAEGDVLFAPANTEINITT-SSKLQLYR 431 (442)
Q Consensus 362 ~F~l~~i~~~~~~~~~-~~~~~~~~il~v~~G~~~i~~---~~~---~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~ 431 (442)
.-++.++.+..+..+. ..+.....|++|++|++.+.. .+. .-.|++||.|+||.+.-+...+ +.++.++.
T Consensus 347 ~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~~egfe~v~ 424 (493)
T PLN00212 347 QMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAEREGCQYIA 424 (493)
T ss_pred CeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeecCCceEEEE
Confidence 3667777776654321 112356899999999999863 223 3469999999999998744444 33454443
No 89
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=72.56 E-value=2.1 Score=38.52 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=15.7
Q ss_pred eeeECCCCCEEEecCCCceeee
Q 013464 280 NYVKLNPGQALYLGANEPHAYI 301 (442)
Q Consensus 280 n~v~l~pGd~i~ipaGt~HAy~ 301 (442)
..++++.||.+++||+++|+--
T Consensus 75 kdi~I~EGe~fLLP~~vpHsP~ 96 (151)
T PF06052_consen 75 KDIPIREGEMFLLPANVPHSPQ 96 (151)
T ss_dssp EEEEE-TTEEEEE-TT--EEEE
T ss_pred EEEEeCCCcEEecCCCCCCCCc
Confidence 4688999999999999999953
No 90
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=71.91 E-value=3.5 Score=39.87 Aligned_cols=23 Identities=4% Similarity=0.131 Sum_probs=20.5
Q ss_pred ceeeECCCCCEEEecCCCceeee
Q 013464 279 FNYVKLNPGQALYLGANEPHAYI 301 (442)
Q Consensus 279 Ln~v~l~pGd~i~ipaGt~HAy~ 301 (442)
-+.+.++|||++|||+|.+|.++
T Consensus 192 G~t~~l~pGDvlfIPkGs~~hf~ 214 (233)
T PRK15457 192 GETMIAKAGDVMFIPKGSSIEFG 214 (233)
T ss_pred CEEEEeCCCcEEEECCCCeEEec
Confidence 47789999999999999998874
No 91
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=70.98 E-value=26 Score=26.81 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=38.6
Q ss_pred eCCCCeeeccCCCCeEEEEEEcCcEEEEeC--CcEEEeCcccEEEEcCCCcEEEEe
Q 013464 370 LPKGTSSVFPAVSGPSIFLVTDGEGSMLTA--SHNDAVAEGDVLFAPANTEINITT 423 (442)
Q Consensus 370 ~~~~~~~~~~~~~~~~il~v~~G~~~i~~~--~~~~~l~~G~~~~Ipa~~~~~i~~ 423 (442)
+.++....+.. .....+.|.+|.+=|+.+ ...+-|..||++-++++..+.+.+
T Consensus 4 L~~g~~~~lr~-~~~~~l~v~~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 4 LAPGETLSLRA-AAGQRLRVESGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred eCCCceEEeEc-CCCcEEEEccccEEEECCCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 44455555443 334558999999888754 457999999999999998877765
No 92
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=70.82 E-value=3.5 Score=36.57 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=19.0
Q ss_pred eeECCCCCEEEecCCCceeeec
Q 013464 281 YVKLNPGQALYLGANEPHAYIS 302 (442)
Q Consensus 281 ~v~l~pGd~i~ipaGt~HAy~~ 302 (442)
...+++||+++||+|++|.+..
T Consensus 76 ~~~l~~GD~~~ip~g~~H~~~n 97 (146)
T smart00835 76 DARLREGDVFVVPQGHPHFQVN 97 (146)
T ss_pred EEEecCCCEEEECCCCEEEEEc
Confidence 4569999999999999998753
No 93
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=70.52 E-value=2.5 Score=38.56 Aligned_cols=25 Identities=16% Similarity=0.281 Sum_probs=18.0
Q ss_pred ceeeECCCCCEEEecCCCceeeecC
Q 013464 279 FNYVKLNPGQALYLGANEPHAYISG 303 (442)
Q Consensus 279 Ln~v~l~pGd~i~ipaGt~HAy~~G 303 (442)
--++.+++||.|.||||+.|=.--|
T Consensus 114 wiri~~e~GDli~vP~g~~HrF~~~ 138 (157)
T PF03079_consen 114 WIRILCEKGDLIVVPAGTYHRFTLG 138 (157)
T ss_dssp EEEEEEETTCEEEE-TT--EEEEES
T ss_pred EEEEEEcCCCEEecCCCCceeEEcC
Confidence 3468899999999999999986544
No 94
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=69.97 E-value=4.8 Score=37.71 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=27.2
Q ss_pred ceeeECCCCCEEEecCCCceeeecCc--E-E-EEeecCC
Q 013464 279 FNYVKLNPGQALYLGANEPHAYISGE--C-I-ECMATSD 313 (442)
Q Consensus 279 Ln~v~l~pGd~i~ipaGt~HAy~~G~--~-v-Eim~~SD 313 (442)
=..++|+||+.|-+|||+=|+.-++. + | |+...+|
T Consensus 152 g~~lkL~PGesitL~Pg~~HsFwae~g~vlvgEvSsvnd 190 (225)
T COG3822 152 GSQLKLSPGESITLPPGLYHSFWAEEGGVLVGEVSSVND 190 (225)
T ss_pred ceeEEECCCCcEecCCCceeeeeecCCcEEEEEEeeccC
Confidence 34578999999999999999976544 2 4 8866654
No 95
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=69.93 E-value=14 Score=35.72 Aligned_cols=51 Identities=10% Similarity=0.279 Sum_probs=41.3
Q ss_pred EEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCc-EEEEec---CcEEEEEEEcCC
Q 013464 386 IFLVTDGEGSMLTASHNDAVAEGDVLFAPANTE-INITTS---SKLQLYRAGVNS 436 (442)
Q Consensus 386 il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~-~~i~~~---~~~~~~~a~~~~ 436 (442)
.++-+.|.|+|..+++++.|...|+++|..+.+ +++.+. .+.++|...+|.
T Consensus 79 giINIG~~G~i~v~g~~y~l~~rd~LYvg~G~~dv~F~s~d~~~pAkFY~~sapA 133 (278)
T COG3717 79 GIINIGGPGTITVDGQEYELGHRDALYVGMGAKDVTFSSIDGAAPAKFYYVSAPA 133 (278)
T ss_pred eEEeeCCCceEEECCEEEEeccccEEEEecCccceEEeccCCCCcceEEEeeccc
Confidence 356778999999999999999999999999987 998762 345677766553
No 96
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=69.06 E-value=4.1 Score=38.34 Aligned_cols=21 Identities=19% Similarity=0.599 Sum_probs=18.8
Q ss_pred eeECCCCCEEEecCCCceeee
Q 013464 281 YVKLNPGQALYLGANEPHAYI 301 (442)
Q Consensus 281 ~v~l~pGd~i~ipaGt~HAy~ 301 (442)
.+.++|||.++||+|+.|.+.
T Consensus 121 ~~~v~pGd~v~IPpg~~H~~i 141 (191)
T PRK04190 121 WIEMEPGTVVYVPPYWAHRSV 141 (191)
T ss_pred EEEECCCCEEEECCCCcEEeE
Confidence 567999999999999999864
No 97
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=68.03 E-value=48 Score=32.63 Aligned_cols=148 Identities=18% Similarity=0.083 Sum_probs=59.7
Q ss_pred ECCCCCEEEecCCCceeeecC-cE----EEEeecCCceEE-------cCCCCCCCCh-hHhhccccccCCCccccccccC
Q 013464 283 KLNPGQALYLGANEPHAYISG-EC----IECMATSDNVVR-------AGLTPKHRDV-QTLCSMLTYKQGFPEILKGFPL 349 (442)
Q Consensus 283 ~l~pGd~i~ipaGt~HAy~~G-~~----vEim~~SDnt~R-------~glt~k~~dv-~~ll~~l~~~~~~~~~~~~~~~ 349 (442)
.+.+|-+.++|||+.|--..- +- +||..- =|+ .+-.-+++.+ ...+-.++-+...-....+.+.
T Consensus 78 ~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e~g~g---p~~v~p~~~~~~~~e~p~n~~~~~ivwld~~dl~W~~~~~~~~ 154 (251)
T PF14499_consen 78 WLPAGSYWFQPAGEPHITAAEGETNLLFIEIGEG---PYDVKPSEEAFDNGERPINVDKDNIVWLDASDLEWISAPPGPP 154 (251)
T ss_dssp -E-TTEEEEE-TT-EEEETTS-EE-EEEEE-S------EE---------SS--TT--GGG-EEEEECCCS--EE-SSSTT
T ss_pred ecCCCceEeccCCCceeeeccCccEEEEEEeCCC---ccccccccccccccccccccccccceEeccccCCccccCCCCC
Confidence 489999999999999975533 21 244322 232 1111222321 2233444433221111010000
Q ss_pred CCc--EEEE-CCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEE--eCCcEEEeCcccEEEEcCCCcEEE-Ee
Q 013464 350 SPY--ITRY-LPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSML--TASHNDAVAEGDVLFAPANTEINI-TT 423 (442)
Q Consensus 350 ~~~--~~~y-~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~--~~~~~~~l~~G~~~~Ipa~~~~~i-~~ 423 (442)
.+. ..+. ++....+.=..++++++..-.+....+.-=.+|++|+.+.. ......+|..|..|+-|+...-.+ .+
T Consensus 155 ~g~~~a~Lwgd~~~g~~~gll~kLPagf~g~i~~h~~~eraVvI~G~~~~~~~~~~~~~~L~~GSYf~s~~~~~H~~~~~ 234 (251)
T PF14499_consen 155 PGAQIAFLWGDPNTGQYTGLLLKLPAGFTGRIHTHASNERAVVISGELDYQSYGASNFGTLDPGSYFGSPGHITHGIFIT 234 (251)
T ss_dssp -SEEEEEEEE-TTS-EE-EEEEE-SSEE--SEEE--S-EEEEEEEEEEEETTEEEETTEEEEE-TT-EE--E------EE
T ss_pred CcceEEEEecCCCCCceeeEEEEcCCCCcCceeccCCceEEEEEEeEEEEeecccCCCccccCCcccccCCccccccccc
Confidence 011 1222 22233344555666665433333344444477999998883 234568899999999999976333 55
Q ss_pred cCcEEEEEEE
Q 013464 424 SSKLQLYRAG 433 (442)
Q Consensus 424 ~~~~~~~~a~ 433 (442)
+.++.+|+..
T Consensus 235 e~~~vlyIRt 244 (251)
T PF14499_consen 235 EDECVLYIRT 244 (251)
T ss_dssp SS-EEEEEEE
T ss_pred CCCEEEEEEE
Confidence 5566666653
No 98
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=67.28 E-value=14 Score=37.07 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=44.6
Q ss_pred CeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCCC
Q 013464 383 GPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSR 437 (442)
Q Consensus 383 ~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~~ 437 (442)
...|+-|.+|+|.+.-+++++....||.|.||.=...++.+..+-.++.+|.+.|
T Consensus 281 ~s~iy~V~eGsg~~~Ig~~rf~~~~~D~fvVPsW~~~~~~~gs~da~LFsfsD~P 335 (351)
T COG3435 281 DSTIYHVVEGSGYTIIGGERFDWSAGDIFVVPSWAWHEHVNGSEDAVLFSFSDRP 335 (351)
T ss_pred CCEEEEEEecceeEEECCEEeeccCCCEEEccCcceeecccCCcceEEEecCCcH
Confidence 4678999999999999999999999999999988887776634445566666554
No 99
>PHA02890 hypothetical protein; Provisional
Probab=66.14 E-value=22 Score=34.83 Aligned_cols=51 Identities=10% Similarity=0.127 Sum_probs=38.0
Q ss_pred CCeEEEEEEcCcEEEEeC----CcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEE
Q 013464 382 SGPSIFLVTDGEGSMLTA----SHNDAVAEGDVLFAPANTEINITTSSKLQLYRAG 433 (442)
Q Consensus 382 ~~~~il~v~~G~~~i~~~----~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~ 433 (442)
..+-.++|++|+++|++. ..+..+++||+|++--++...+.+ .++.+++..
T Consensus 91 nEy~FVlCL~Gs~~In~~~~d~~iS~~I~kGeaF~mdv~t~H~i~T-Knl~L~Vik 145 (278)
T PHA02890 91 IECFFVACIEGSCKINVNIGDREISDHIHENQGFIMDVGLDHAIDS-DNVGLFITK 145 (278)
T ss_pred ccEEEEEEeCCeEEEEEecCCceeeeeeecCceEEEEccceEEEEc-cceeEEEEE
Confidence 346778999999999863 237889999999999998855554 455555443
No 100
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.13 E-value=43 Score=34.49 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=43.9
Q ss_pred cCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe-cCcEEEEEEE
Q 013464 379 PAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT-SSKLQLYRAG 433 (442)
Q Consensus 379 ~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a~ 433 (442)
.+.++-.++++-.|+..+.++=..+.++.||..+||-++.++++- ++...++.+-
T Consensus 142 ~NADge~Livpq~G~l~l~te~G~l~v~pgeiavIPRG~~frve~~~~~~rgy~~E 197 (427)
T COG3508 142 RNADGELLIVPQQGELRLKTELGVLEVEPGEIAVIPRGTTFRVELKDGEARGYGCE 197 (427)
T ss_pred hcCCCCEEEEeecceEEEEEeeceEEecCCcEEEeeCCceEEEEecCCceEEEEEe
Confidence 345677788888999999887678999999999999999988875 4555666653
No 101
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=62.76 E-value=4.9 Score=36.79 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=18.8
Q ss_pred eeeECCCCCEEEecCCCceee
Q 013464 280 NYVKLNPGQALYLGANEPHAY 300 (442)
Q Consensus 280 n~v~l~pGd~i~ipaGt~HAy 300 (442)
=++.|++||.|+||||+=|-.
T Consensus 116 IRi~vekGDlivlPaGiyHRF 136 (179)
T KOG2107|consen 116 IRIFVEKGDLIVLPAGIYHRF 136 (179)
T ss_pred EEEEEecCCEEEecCcceeee
Confidence 377899999999999999975
No 102
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.12 E-value=31 Score=28.11 Aligned_cols=42 Identities=21% Similarity=0.418 Sum_probs=34.6
Q ss_pred CCeEEEEEEcCcEEEEe--CCcEEEeCcccEEEEcCCCcEEEEe
Q 013464 382 SGPSIFLVTDGEGSMLT--ASHNDAVAEGDVLFAPANTEINITT 423 (442)
Q Consensus 382 ~~~~il~v~~G~~~i~~--~~~~~~l~~G~~~~Ipa~~~~~i~~ 423 (442)
..+.+..|+.|..++.- ..+......|+.|-||++.++.++-
T Consensus 40 a~~E~Mtvv~Gal~v~lpgs~dWq~~~~Ge~F~VpgnS~F~lqV 83 (94)
T COG3123 40 AAPEEMTVVSGALTVLLPGSDDWQVYTAGEVFNVPGNSEFDLQV 83 (94)
T ss_pred CCceEEEEEeeEEEEEcCCCcccEEecCCceEEcCCCCeEEEEE
Confidence 46889999999999864 3457889999999999999876653
No 103
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=59.85 E-value=8.6 Score=34.23 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=33.6
Q ss_pred eECCCCCEEEecCCCceeeecCcEEEEeecCCceEEc--------C-CCCCCCChhHhhcccc
Q 013464 282 VKLNPGQALYLGANEPHAYISGECIECMATSDNVVRA--------G-LTPKHRDVQTLCSMLT 335 (442)
Q Consensus 282 v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt~R~--------g-lt~k~~dv~~ll~~l~ 335 (442)
+++..||++.||||+=|.-++-. -|.++-. + .|+++-|.+++.+-+.
T Consensus 87 l~v~~GDvlliPAGvGH~rl~sS-------~DF~VvGaYp~G~q~diqtg~~t~~aear~~I~ 142 (163)
T COG4297 87 LEVGEGDVLLIPAGVGHCRLHSS-------ADFQVVGAYPPGQQADIQTGAPTDLAEARARIK 142 (163)
T ss_pred eeecCCCEEEEecCcccccccCC-------CCeEEEcccCCcccccccCCCCccHHHHHHHHH
Confidence 56999999999999999876543 4554432 2 3677777777766554
No 104
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=59.53 E-value=27 Score=33.32 Aligned_cols=57 Identities=21% Similarity=0.117 Sum_probs=41.7
Q ss_pred eEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe
Q 013464 363 FEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT 423 (442)
Q Consensus 363 F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~ 423 (442)
-.+.-+++.+|..+..-.+.+..+.+|++|+.. . +...+.+||.+.+|++......+
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~--d--e~g~y~~Gd~i~~p~~~~H~p~a 183 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS--D--ETGVYGVGDFEEADGSVQHQPRT 183 (215)
T ss_pred cEEEEEEECCCCccCCCcCCCcEEEEEEEEEEE--c--CCCccCCCeEEECCCCCCcCccc
Confidence 466667777776654445578888899999853 2 33568999999999999755544
No 105
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=57.78 E-value=5.5 Score=31.31 Aligned_cols=18 Identities=22% Similarity=0.387 Sum_probs=14.4
Q ss_pred eeeECCCCCEEEecCCCc
Q 013464 280 NYVKLNPGQALYLGANEP 297 (442)
Q Consensus 280 n~v~l~pGd~i~ipaGt~ 297 (442)
..+.++|||++++|+|..
T Consensus 44 ~~~~~~aGD~~~~p~G~~ 61 (74)
T PF05899_consen 44 ETVTFKAGDAFFLPKGWT 61 (74)
T ss_dssp EEEEEETTEEEEE-TTEE
T ss_pred CEEEEcCCcEEEECCCCE
Confidence 357799999999999983
No 106
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=57.40 E-value=8.8 Score=37.67 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.8
Q ss_pred eeECCCCCEEEecCCCceeeec
Q 013464 281 YVKLNPGQALYLGANEPHAYIS 302 (442)
Q Consensus 281 ~v~l~pGd~i~ipaGt~HAy~~ 302 (442)
.+.++|||.+++|+|++|.|..
T Consensus 68 ~~~~~~g~~i~i~p~~~h~~~~ 89 (290)
T PRK10572 68 AFVCRPGDLLLFPPGEIHHYGR 89 (290)
T ss_pred eEecCCCCEEEECCCCceeecc
Confidence 5679999999999999999864
No 107
>PF12852 Cupin_6: Cupin
Probab=57.39 E-value=9.1 Score=35.12 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=21.6
Q ss_pred eeeECCCCCEEEecCCCceeeecCcE
Q 013464 280 NYVKLNPGQALYLGANEPHAYISGEC 305 (442)
Q Consensus 280 n~v~l~pGd~i~ipaGt~HAy~~G~~ 305 (442)
..+.|++||.+++|.|+.|.+.++..
T Consensus 55 ~~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 55 EPIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred CeEEecCCCEEEEcCCCCeEeCCCCC
Confidence 34789999999999999999865543
No 108
>PRK13501 transcriptional activator RhaR; Provisional
Probab=55.46 E-value=7.9 Score=38.09 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=19.9
Q ss_pred eeeECCCCCEEEecCCCceeeec
Q 013464 280 NYVKLNPGQALYLGANEPHAYIS 302 (442)
Q Consensus 280 n~v~l~pGd~i~ipaGt~HAy~~ 302 (442)
+.+.+++||.++||+|.+|++-.
T Consensus 56 ~~~~l~~g~~~~I~p~~~H~~~~ 78 (290)
T PRK13501 56 HPYRITCGDVFYIQAADHHSYES 78 (290)
T ss_pred eeeeecCCeEEEEcCCCcccccc
Confidence 45679999999999999999754
No 109
>PRK13502 transcriptional activator RhaR; Provisional
Probab=54.23 E-value=8.9 Score=37.41 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.2
Q ss_pred eeeECCCCCEEEecCCCceeeec
Q 013464 280 NYVKLNPGQALYLGANEPHAYIS 302 (442)
Q Consensus 280 n~v~l~pGd~i~ipaGt~HAy~~ 302 (442)
+.+.++|||.++||+|.+|.+..
T Consensus 56 ~~~~l~~g~l~li~~~~~H~~~~ 78 (282)
T PRK13502 56 RPYRITRGDLFYIRAEDKHSYTS 78 (282)
T ss_pred EEEeecCCcEEEECCCCcccccc
Confidence 35789999999999999999864
No 110
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=53.76 E-value=6.4 Score=44.39 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=25.8
Q ss_pred HHHHHHHhhCCCCcccchhhcceeeECCCCCEEEecCCCcee
Q 013464 258 QLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHA 299 (442)
Q Consensus 258 ~~~~~l~~~yp~D~G~~~~~~Ln~v~l~pGd~i~ipaGt~HA 299 (442)
.+..||.+-|.=.+=.|+ =..|||||||||-||-
T Consensus 785 ~lr~RLkeEyGVe~Wtfv--------Q~LGdAVfIPAGaPHQ 818 (889)
T KOG1356|consen 785 YLRRRLKEEYGVEPWTFV--------QFLGDAVFIPAGAPHQ 818 (889)
T ss_pred HHHHHHHHHhCCCccchh--------hcccceEEecCCCcHH
Confidence 566789999874444332 2469999999999998
No 111
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=53.48 E-value=7.3 Score=35.68 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=29.4
Q ss_pred eEEEEEEcCcEEEEeCC---c--EEEeCcccEEEEcCCCcEEEE
Q 013464 384 PSIFLVTDGEGSMLTAS---H--NDAVAEGDVLFAPANTEINIT 422 (442)
Q Consensus 384 ~~il~v~~G~~~i~~~~---~--~~~l~~G~~~~Ipa~~~~~i~ 422 (442)
-.|=+|++|+|-..... . ++-+.+||-++||||.--+++
T Consensus 94 eeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFT 137 (179)
T KOG2107|consen 94 EEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFT 137 (179)
T ss_pred hheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeee
Confidence 45677888888775432 1 678999999999999874444
No 112
>PRK13500 transcriptional activator RhaR; Provisional
Probab=53.31 E-value=9.3 Score=38.29 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=20.2
Q ss_pred eeeECCCCCEEEecCCCceeeec
Q 013464 280 NYVKLNPGQALYLGANEPHAYIS 302 (442)
Q Consensus 280 n~v~l~pGd~i~ipaGt~HAy~~ 302 (442)
+...+++||.++|++|++|.+..
T Consensus 86 ~~~~l~~Gdl~~I~~~~~H~~~~ 108 (312)
T PRK13500 86 RPYRITRGDLFYIHADDKHSYAS 108 (312)
T ss_pred EEEeecCCeEEEECCCCeecccc
Confidence 35679999999999999999865
No 113
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=52.18 E-value=1.3e+02 Score=27.32 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=32.6
Q ss_pred CceEEEEEEeCCCC-eeeccCCCCeEEEEEEcCcEEEE--eCC--cEEEeCcccEEEEcCCCc
Q 013464 361 DEFEVDCCILPKGT-SSVFPAVSGPSIFLVTDGEGSML--TAS--HNDAVAEGDVLFAPANTE 418 (442)
Q Consensus 361 ~~F~l~~i~~~~~~-~~~~~~~~~~~il~v~~G~~~i~--~~~--~~~~l~~G~~~~Ipa~~~ 418 (442)
.+|.+..+--+... .+. -..+...+.-++|...+. .+| +.+.++.||++++|+++.
T Consensus 32 ~~f~VmvVGGPN~R~DyH--ine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vp 92 (151)
T PF06052_consen 32 DDFIVMVVGGPNQRTDYH--INETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVP 92 (151)
T ss_dssp SSEEEEEEESSB--SSEE--E-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--
T ss_pred CCeEEEEEcCCCCCCccc--cCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCC
Confidence 46777766432111 122 235778888999987774 233 378999999999999986
No 114
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=50.67 E-value=72 Score=29.56 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=38.8
Q ss_pred CCeEEEEEEcCcEEEEe--C-Cc--EEEeCcccEEEEcCCCc--EEEEecCcEEEEEEEcCCC
Q 013464 382 SGPSIFLVTDGEGSMLT--A-SH--NDAVAEGDVLFAPANTE--INITTSSKLQLYRAGVNSR 437 (442)
Q Consensus 382 ~~~~il~v~~G~~~i~~--~-~~--~~~l~~G~~~~Ipa~~~--~~i~~~~~~~~~~a~~~~~ 437 (442)
.-..+.+++.|+|-... . +. .+.+.+||-+.||+|+. +++..+..+..+|-|...+
T Consensus 94 ~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~~~ 156 (181)
T COG1791 94 TDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTEPE 156 (181)
T ss_pred CCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeCCC
Confidence 34566677777766542 1 12 47788999999999997 7776666777777776544
No 115
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=49.05 E-value=13 Score=32.15 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=15.7
Q ss_pred eeeECCCCCEEEecCCCc
Q 013464 280 NYVKLNPGQALYLGANEP 297 (442)
Q Consensus 280 n~v~l~pGd~i~ipaGt~ 297 (442)
+.+.+++||++|+|+|+.
T Consensus 82 e~v~~~aGD~~~~~~G~~ 99 (116)
T COG3450 82 EPVEVRAGDSFVFPAGFK 99 (116)
T ss_pred eEEEEcCCCEEEECCCCe
Confidence 467899999999999974
No 116
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=48.04 E-value=9.7 Score=39.24 Aligned_cols=28 Identities=39% Similarity=0.699 Sum_probs=21.6
Q ss_pred eECCCCCEEEecCCCceeeecCcEE-EEeecC
Q 013464 282 VKLNPGQALYLGANEPHAYISGECI-ECMATS 312 (442)
Q Consensus 282 v~l~pGd~i~ipaGt~HAy~~G~~v-Eim~~S 312 (442)
..++|||.+|||+|.+|- |.-. +||.-|
T Consensus 181 ~vlepGDiLYiPp~~~H~---gvae~dc~tyS 209 (383)
T COG2850 181 EVLEPGDILYIPPGFPHY---GVAEDDCMTYS 209 (383)
T ss_pred hhcCCCceeecCCCCCcC---Cccccccccee
Confidence 458999999999999996 5443 666554
No 117
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=46.92 E-value=14 Score=35.90 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.6
Q ss_pred eeeECCCCCEEEecCCCceee
Q 013464 280 NYVKLNPGQALYLGANEPHAY 300 (442)
Q Consensus 280 n~v~l~pGd~i~ipaGt~HAy 300 (442)
+.+.++|||.++||+|.+|+.
T Consensus 61 ~~~~l~~g~l~~i~p~~~H~~ 81 (278)
T PRK10296 61 KRVLLERGDFVFIPLGSHHQS 81 (278)
T ss_pred EEEEECCCcEEEeCCCCccce
Confidence 356899999999999999975
No 118
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=46.21 E-value=14 Score=34.61 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=16.5
Q ss_pred eeeECCCCCEEEecCCCceeee
Q 013464 280 NYVKLNPGQALYLGANEPHAYI 301 (442)
Q Consensus 280 n~v~l~pGd~i~ipaGt~HAy~ 301 (442)
-.++++|||.++||+|..|..+
T Consensus 110 ~~v~~~~G~~v~IPp~yaH~tI 131 (182)
T PF06560_consen 110 IAVEAKPGDVVYIPPGYAHRTI 131 (182)
T ss_dssp EEEEE-TTEEEEE-TT-EEEEE
T ss_pred EEEEeCCCCEEEECCCceEEEE
Confidence 4578999999999999999964
No 119
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=46.02 E-value=14 Score=36.08 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=19.6
Q ss_pred eeeECCCCCEEEecCCCceeee
Q 013464 280 NYVKLNPGQALYLGANEPHAYI 301 (442)
Q Consensus 280 n~v~l~pGd~i~ipaGt~HAy~ 301 (442)
..+.+++||.++||+|++|.+.
T Consensus 62 ~~~~l~~g~~~ii~~~~~H~~~ 83 (287)
T TIGR02297 62 HEYSEYAPCFFLTPPSVPHGFV 83 (287)
T ss_pred EEEEecCCeEEEeCCCCccccc
Confidence 3567999999999999999975
No 120
>PRK13503 transcriptional activator RhaS; Provisional
Probab=45.63 E-value=11 Score=36.56 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.2
Q ss_pred eeECCCCCEEEecCCCceeee
Q 013464 281 YVKLNPGQALYLGANEPHAYI 301 (442)
Q Consensus 281 ~v~l~pGd~i~ipaGt~HAy~ 301 (442)
..++++||+++||+|++|.+-
T Consensus 54 ~~~l~~g~~~~i~~~~~h~~~ 74 (278)
T PRK13503 54 PYTLSGGTVCFVRDHDRHLYE 74 (278)
T ss_pred cccccCCcEEEECCCccchhh
Confidence 345999999999999999864
No 121
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=40.56 E-value=54 Score=26.71 Aligned_cols=71 Identities=11% Similarity=0.142 Sum_probs=46.9
Q ss_pred CCCCCceeEEEccc------hhhhcCCCcHHHHHHHhccCc-chhhhhcchhhhhhhhhhccccchhHHHHHHHHHHHHh
Q 013464 154 DDNHKPEMALAITE------FEALCSFISLQELKSVLQNVP-EIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLM 226 (442)
Q Consensus 154 D~n~KpE~w~aLt~------f~al~GFr~~~ei~~~L~a~p-~~~~~~G~~~~~~~~~~~~~~~~~~~~~~L~~~f~~~~ 226 (442)
|+..+--.-|-|.. .-.+||.+...+|..+.++.+ .++.++|...+. ++-+.++++|..
T Consensus 10 DpR~~~~~ry~L~~iL~i~~~a~l~G~~~~~~i~~~~~~~~~~l~~~l~~~~~~------------PS~~Ti~rvl~~-- 75 (90)
T PF13808_consen 10 DPRSRRGRRYPLADILLIALCAVLCGADSWREIAEWARAHEEWLRKRLGLPRGV------------PSHDTIRRVLSR-- 75 (90)
T ss_pred CCcccCCceecHHHHHHHHHHHHHHccccHHHHHHHHHHhHHHHHHhcCCCCCC------------CcHHHHHHHHHH--
Confidence 44444344454443 567899999999999998854 577888775431 355667777764
Q ss_pred cCCHHHHHHHHHH
Q 013464 227 TASMEMTTKATTK 239 (442)
Q Consensus 227 ~~~~e~~~~~i~~ 239 (442)
+|.+.+.++..+
T Consensus 76 -ld~~~l~~~~~~ 87 (90)
T PF13808_consen 76 -LDPEALEEAFRS 87 (90)
T ss_pred -CCHHHHHHHHHH
Confidence 467777665543
No 122
>COG1741 Pirin-related protein [General function prediction only]
Probab=39.55 E-value=3.5e+02 Score=26.98 Aligned_cols=116 Identities=14% Similarity=0.174 Sum_probs=56.1
Q ss_pred hcceeeECCCCCEEEecCCCceeeecCcEE-EEee-cCCceEEc---CCCC--CCCChhHhhccccccCCCccc---ccc
Q 013464 277 FFFNYVKLNPGQALYLGANEPHAYISGECI-ECMA-TSDNVVRA---GLTP--KHRDVQTLCSMLTYKQGFPEI---LKG 346 (442)
Q Consensus 277 ~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~v-Eim~-~SDnt~R~---glt~--k~~dv~~ll~~l~~~~~~~~~---~~~ 346 (442)
.+=|...++|||+-.+-|| +|++= |--. .++..++. -+.. +.++++-..+.+.|...-|.. +..
T Consensus 81 S~Gn~~~i~pGdvqwMTAG------~GI~HSE~~~~~~~~~l~~~QlWv~lP~~~k~~~P~yq~~~~~~~~p~~~~g~~~ 154 (276)
T COG1741 81 SLGNKGVIRPGDVQWMTAG------SGIVHSEMNPPSTGKPLHGLQLWVNLPAADKMIAPRYQHLAFPDEIPRVELGLTA 154 (276)
T ss_pred cCCceeeecccceeEEcCC------CceeecccCCccCCCccceeeeecCCchhhccCCcccccccCcccCceeecceEE
Confidence 3557778999999999875 34442 3322 35545552 1121 333333333333322221110 000
Q ss_pred ccCCCcEEEECCCCCceEEEEEEe--CCCCeeeccCCCCeEEEEEEcCcEEEEe
Q 013464 347 FPLSPYITRYLPPFDEFEVDCCIL--PKGTSSVFPAVSGPSIFLVTDGEGSMLT 398 (442)
Q Consensus 347 ~~~~~~~~~y~~p~~~F~l~~i~~--~~~~~~~~~~~~~~~il~v~~G~~~i~~ 398 (442)
.-..+.......|+..|.+..+.+ ..+..+.+.+...-..+.|++|..++..
T Consensus 155 rvi~G~~~g~~~pv~~~~~~~~dl~l~~g~~~~l~~~~~~~~l~v~~G~l~v~g 208 (276)
T COG1741 155 RVIAGRDGGLSSPVRQDSLHYVDLRLEAGARLQLPPAGRRAYLYVIEGTLEVNG 208 (276)
T ss_pred EEeccccCCcccccccceeEEEEEEeCCCceEecCCCCceEEEEEEEeEEEEcc
Confidence 100000000122344455555544 4566666653345678899999888864
No 123
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=39.35 E-value=17 Score=33.02 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=13.5
Q ss_pred eeeECCCCCEEEecCCCcee
Q 013464 280 NYVKLNPGQALYLGANEPHA 299 (442)
Q Consensus 280 n~v~l~pGd~i~ipaGt~HA 299 (442)
+.+..+|||++|||.|+-=.
T Consensus 113 ~~~~A~~GDvi~iPkGs~I~ 132 (152)
T PF06249_consen 113 QTVTAKPGDVIFIPKGSTIT 132 (152)
T ss_dssp EEEEEETT-EEEE-TT-EEE
T ss_pred EEEEEcCCcEEEECCCCEEE
Confidence 56778999999999986433
No 124
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=39.32 E-value=1.9e+02 Score=23.42 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=36.1
Q ss_pred CCCeEEEEEEcCcEEEEe--C-----CcEEEeCcccEEEEcCCCcEEEEe-cCcEEEE
Q 013464 381 VSGPSIFLVTDGEGSMLT--A-----SHNDAVAEGDVLFAPANTEINITT-SSKLQLY 430 (442)
Q Consensus 381 ~~~~~il~v~~G~~~i~~--~-----~~~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~ 430 (442)
.+....+.|++|+.+... + .+...+..|+..+|++..-.+|.. +.++++.
T Consensus 23 ~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f~ 80 (82)
T PF09313_consen 23 AGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRFQ 80 (82)
T ss_dssp TTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-EEE
T ss_pred CCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEEEE
Confidence 356889999999999864 2 347789999999999998877875 4446654
No 125
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=38.52 E-value=1.1e+02 Score=26.73 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=25.6
Q ss_pred CCeEEEEEEcCcEEEEeC----CcEEEeCcc-cEEEEcCCCcEEEEe
Q 013464 382 SGPSIFLVTDGEGSMLTA----SHNDAVAEG-DVLFAPANTEINITT 423 (442)
Q Consensus 382 ~~~~il~v~~G~~~i~~~----~~~~~l~~G-~~~~Ipa~~~~~i~~ 423 (442)
..-..++|+.|+.++... .+++.|..- ..++||++....+.+
T Consensus 53 ~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~ 99 (131)
T PF05523_consen 53 KTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKN 99 (131)
T ss_dssp S--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE-
T ss_pred cccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhc
Confidence 457899999999999742 236667666 488899998766654
No 126
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=37.73 E-value=21 Score=35.60 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=18.9
Q ss_pred eeECCCCCEEEecCCCceeeec
Q 013464 281 YVKLNPGQALYLGANEPHAYIS 302 (442)
Q Consensus 281 ~v~l~pGd~i~ipaGt~HAy~~ 302 (442)
.+.++|||.++|++|++|.+..
T Consensus 65 ~~~l~~Gd~ili~s~~~H~~~~ 86 (302)
T PRK10371 65 KVQINQGHITLFWACTPHQLTD 86 (302)
T ss_pred EEEEcCCcEEEEecCCcccccc
Confidence 4569999999999999998643
No 127
>PF05941 Chordopox_A20R: Chordopoxvirus A20R protein; InterPro: IPR010267 This family consists of several Chordopoxvirus A20R proteins. The A20R protein is required for DNA replication, is associated with the processive form of the viral DNA polymerase, and directly interacts with the viral proteins encoded by the D4R, D5R, and H5R open reading frames. A20R may contribute to the assembly or stability of the multiprotein DNA replication complex [].
Probab=34.05 E-value=35 Score=34.74 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=27.1
Q ss_pred eeeECCCCCEEEecC--CCceeeecCcEEEEe
Q 013464 280 NYVKLNPGQALYLGA--NEPHAYISGECIECM 309 (442)
Q Consensus 280 n~v~l~pGd~i~ipa--Gt~HAy~~G~~vEim 309 (442)
+.+.|+||..+|+|- |+.|.|..|+.+|+-
T Consensus 67 ~~f~L~~G~Y~Flp~~FG~~~iY~~Gsm~elg 98 (334)
T PF05941_consen 67 KPFALEPGEYIFLPMCFGNVFIYSKGSMMELG 98 (334)
T ss_pred CcceecCceEEEEhhhCCcEEEEECCcEEEec
Confidence 567899999999995 999999999998884
No 128
>PRK01712 carbon storage regulator; Provisional
Probab=33.23 E-value=70 Score=24.76 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=31.8
Q ss_pred eeECCCCCEEEecCCCceeeecCcEEEEeecCCceEEcCC-CCCCCC--hhHhhc
Q 013464 281 YVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGL-TPKHRD--VQTLCS 332 (442)
Q Consensus 281 ~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt~R~gl-t~k~~d--v~~ll~ 332 (442)
.+.-++||++.|. .+.-|-+...+++.+|.|. .||.++ -+++..
T Consensus 3 vLtRk~gE~I~Ig--------d~I~I~V~~i~~~~VrlGI~AP~~v~I~R~Ei~~ 49 (64)
T PRK01712 3 ILTRKVGESLMIG--------DDIEVTVLGVKGNQVRIGINAPKEVSVHREEIYQ 49 (64)
T ss_pred eEEccCCCEEEeC--------CCEEEEEEEEeCCEEEEEEECCCCceEeHHHHHH
Confidence 4567899999994 3333788888999999996 588764 344443
No 129
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=32.74 E-value=47 Score=34.37 Aligned_cols=34 Identities=32% Similarity=0.393 Sum_probs=23.8
Q ss_pred eeECCCCCEEEecCCCceeeecCcEEEEeecCC--ceEEcCCCC
Q 013464 281 YVKLNPGQALYLGANEPHAYISGECIECMATSD--NVVRAGLTP 322 (442)
Q Consensus 281 ~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SD--nt~R~glt~ 322 (442)
.+.+++||.+||||... +++-++|| .+||++-..
T Consensus 373 ~~~v~rG~V~fI~a~~~--------i~~~~~sd~~~~yrAf~~~ 408 (411)
T KOG2757|consen 373 KILVNRGDVLFIPANHP--------IHLSSSSDPFLGYRAFSNS 408 (411)
T ss_pred ceeeccCcEEEEcCCCC--------ceeeccCcceeeeeccccc
Confidence 45788888888888754 36677777 467876443
No 130
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=32.11 E-value=41 Score=32.10 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.0
Q ss_pred ceeeECCCCCEEEecCCCceeee
Q 013464 279 FNYVKLNPGQALYLGANEPHAYI 301 (442)
Q Consensus 279 Ln~v~l~pGd~i~ipaGt~HAy~ 301 (442)
...+.+++||.+|||+|--|...
T Consensus 125 ~~v~~~~~Gd~iyVPp~~gH~t~ 147 (209)
T COG2140 125 ARVIAVRAGDVIYVPPGYGHYTI 147 (209)
T ss_pred EEEEEecCCcEEEeCCCcceEee
Confidence 45677999999999999999954
No 131
>TIGR00202 csrA carbon storage regulator (csrA). Modulates the expression of genes in the glycogen biosynthesis and gluconeogenesis pathways by accelerating the 5'-to-3' degradation of these transcripts through selective RNA binding. The N-terminal end of the sequence (AA 11-45) contains the KH motif which is characteristic of a set of RNA-binding proteins.
Probab=31.61 E-value=81 Score=24.79 Aligned_cols=43 Identities=12% Similarity=0.380 Sum_probs=32.0
Q ss_pred eeECCCCCEEEecCCCceeeecCcE-EEEeecCCceEEcCC-CCCCCC--hhHhhc
Q 013464 281 YVKLNPGQALYLGANEPHAYISGEC-IECMATSDNVVRAGL-TPKHRD--VQTLCS 332 (442)
Q Consensus 281 ~v~l~pGd~i~ipaGt~HAy~~G~~-vEim~~SDnt~R~gl-t~k~~d--v~~ll~ 332 (442)
.+.-++||++.|. +++ +-+...+++.+|.|. -||.++ -+++..
T Consensus 3 iLtRk~gE~I~Ig---------d~I~I~Vl~i~g~~VrlGI~AP~~v~I~R~Ei~~ 49 (69)
T TIGR00202 3 ILSRKVNESIQIG---------DDIEVKVLSVKGDQVKLGIEAPKEISIHREEIYE 49 (69)
T ss_pred eEEccCCCEEEeC---------CCEEEEEEEEcCCeEEEEEECCCCCeEeHHHHHH
Confidence 3567899999985 345 888888999999996 488865 344443
No 132
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=30.17 E-value=96 Score=25.42 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=40.9
Q ss_pred cccHHHHHhhCCCcCCchhhhhcCCCCCceeeeeecCCCCccccCCCHHHHHHhcCcCCCCCCCCCCCceeEE
Q 013464 91 IVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMAL 163 (442)
Q Consensus 91 ~~~L~~li~~~p~~lG~~~~~~~g~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~~~Y~D~n~KpE~w~ 163 (442)
..++.+|.++= .++|+-+=||-+|+.|-+++.+|.--=|-+.|.+.-.+..+.=.-+-||-|+|+
T Consensus 21 ~i~f~dL~~kI--------rdkf~~~~~~~iKykDEGD~iti~sq~DLd~Ai~~a~~~~~~~~~~~~~~e~w~ 85 (86)
T cd06408 21 DTGFADFEDKI--------RDKFGFKRRLKIKMKDDGDMITMGDQDDLDMAIDTARSEARKQGSDMGKLEIWV 85 (86)
T ss_pred CCCHHHHHHHH--------HHHhCCCCceEEEEEcCCCCccccCHHHHHHHHHHHHHHHHhhcccccceeeec
Confidence 45788887764 344554469999999998888887665555554333210000011468999996
No 133
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=29.67 E-value=15 Score=36.65 Aligned_cols=42 Identities=26% Similarity=0.240 Sum_probs=32.9
Q ss_pred CCCCCceeeeeecC-CCCccccCCCHHHHHHhcCcCC---CCCCCC
Q 013464 114 GCDLPFLFKVLSVA-KALSIQAHPDKELAKTLHKLLP---NVYKDD 155 (442)
Q Consensus 114 g~~lP~L~KvLda~-~~LSIQVHPd~~~A~~~~~~~~---~~Y~D~ 155 (442)
..++|+-+-+|+-. +.-==||||+-+-|+....+++ ++|.|-
T Consensus 207 mPk~PIYv~lL~~eAq~viGqVHp~t~~A~a~Le~EGF~~~gYVDI 252 (336)
T COG3138 207 MPKHPIYVHLLSEEAQAVIGQVHPDTAPARAVLEKEGFRYRGYVDI 252 (336)
T ss_pred CCCCceeeccCCHHHHHHhCCcCCCchHHHHHHHHhCccccCeeEe
Confidence 45789999999754 4444499999999998888776 788775
No 134
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.46 E-value=30 Score=36.96 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=17.2
Q ss_pred eeECCCCCEEEecCCCceee
Q 013464 281 YVKLNPGQALYLGANEPHAY 300 (442)
Q Consensus 281 ~v~l~pGd~i~ipaGt~HAy 300 (442)
...++|||.+|+|-|++|--
T Consensus 382 e~vle~GDllYfPRG~IHQA 401 (629)
T KOG3706|consen 382 EFVLEPGDLLYFPRGTIHQA 401 (629)
T ss_pred HhhcCCCcEEEecCcceeec
Confidence 34589999999999999963
No 135
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=28.45 E-value=14 Score=35.49 Aligned_cols=13 Identities=54% Similarity=0.836 Sum_probs=11.2
Q ss_pred CCCCccccCCCHH
Q 013464 127 AKALSIQAHPDKE 139 (442)
Q Consensus 127 ~~~LSIQVHPd~~ 139 (442)
=+.||||.|||++
T Consensus 120 YR~LSik~HPDK~ 132 (230)
T KOG0721|consen 120 YRRLSIKYHPDKQ 132 (230)
T ss_pred HHHhhhhhCCCcC
Confidence 3689999999995
No 136
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=27.98 E-value=48 Score=33.18 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=20.2
Q ss_pred eeECCCCCEEEecCCCceeeecCcE
Q 013464 281 YVKLNPGQALYLGANEPHAYISGEC 305 (442)
Q Consensus 281 ~v~l~pGd~i~ipaGt~HAy~~G~~ 305 (442)
.+.+++||++||||+.-...+.|..
T Consensus 272 ~~~l~~G~~~~ipa~~~~~~i~g~~ 296 (302)
T TIGR00218 272 TLPLKKGESFFIPAHLGPFTIEGEC 296 (302)
T ss_pred EEEEecccEEEEccCCccEEEEeeE
Confidence 4779999999999998766666655
No 137
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=26.67 E-value=78 Score=30.86 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=10.8
Q ss_pred CCCccccCCCHHH
Q 013464 128 KALSIQAHPDKEL 140 (442)
Q Consensus 128 ~~LSIQVHPd~~~ 140 (442)
..||+|+|||+.-
T Consensus 36 ~klal~~HPDk~~ 48 (264)
T KOG0719|consen 36 HKLALRLHPDKNH 48 (264)
T ss_pred HHHHHHhCCCcch
Confidence 4689999999873
No 138
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=25.45 E-value=1.9e+02 Score=27.98 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=28.6
Q ss_pred CeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe
Q 013464 383 GPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT 423 (442)
Q Consensus 383 ~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~ 423 (442)
...+.+.++|.-.....|..+.|++|+++-|+++.--.+.+
T Consensus 136 ~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~yH~Fw~ 176 (225)
T PF07385_consen 136 DTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGIYHWFWG 176 (225)
T ss_dssp SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTEEEEEEE
T ss_pred CCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCCeeeEEe
Confidence 35677889999887778889999999999999998755555
No 139
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=24.32 E-value=49 Score=37.72 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=22.0
Q ss_pred hcceeeECCCCCEEEecCCCceeee
Q 013464 277 FFFNYVKLNPGQALYLGANEPHAYI 301 (442)
Q Consensus 277 ~~Ln~v~l~pGd~i~ipaGt~HAy~ 301 (442)
..-....|++|+.+|||.|-+||+.
T Consensus 193 dkC~~~~l~~g~T~~iPsGwIhAV~ 217 (776)
T KOG1633|consen 193 DKCYKCILKQGQTLFIPSGWIHAVL 217 (776)
T ss_pred ceeEEEEeccCceEecccceeEeee
Confidence 5567788999999999999999975
No 140
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=23.77 E-value=61 Score=26.12 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=17.1
Q ss_pred CCCCCEEEecCCCceeeecCc
Q 013464 284 LNPGQALYLGANEPHAYISGE 304 (442)
Q Consensus 284 l~pGd~i~ipaGt~HAy~~G~ 304 (442)
..+||.++.|+|+.|...+..
T Consensus 62 ~~~G~~~~~p~g~~h~~~s~~ 82 (91)
T PF12973_consen 62 YGAGDWLRLPPGSSHTPRSDE 82 (91)
T ss_dssp EETTEEEEE-TTEEEEEEESS
T ss_pred CCCCeEEEeCCCCccccCcCC
Confidence 489999999999999977543
No 141
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=23.24 E-value=91 Score=28.92 Aligned_cols=34 Identities=9% Similarity=0.209 Sum_probs=22.9
Q ss_pred CCCCCEEEecCCCceeeec-CcEEEEeecCCceEE
Q 013464 284 LNPGQALYLGANEPHAYIS-GECIECMATSDNVVR 317 (442)
Q Consensus 284 l~pGd~i~ipaGt~HAy~~-G~~vEim~~SDnt~R 317 (442)
-..+.++|||+|..|++.. ++-.+++=..|+.|.
T Consensus 102 ~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~~~~y~ 136 (176)
T TIGR01221 102 AENKRQLWIPEGFAHGFVVLSDEAEFLYKCTDYYA 136 (176)
T ss_pred CCCCCEEEeCCcceeEEEEcCCCeEEEEeCCCCcC
Confidence 3457799999999999863 333555555555554
No 142
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=22.01 E-value=2e+02 Score=28.81 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=36.6
Q ss_pred CCCeEEEEEEcCcEEEEeC-CcEEEeCcccEEEEcCCCcEEEEe
Q 013464 381 VSGPSIFLVTDGEGSMLTA-SHNDAVAEGDVLFAPANTEINITT 423 (442)
Q Consensus 381 ~~~~~il~v~~G~~~i~~~-~~~~~l~~G~~~~Ipa~~~~~i~~ 423 (442)
.-.|.++.+..|..+|..+ ++.+.+..+..+|+|.+..+++.+
T Consensus 36 ~~~~~li~v~~G~~~i~~~~g~~l~i~~p~~~~~p~~~~~~~~~ 79 (291)
T PRK15186 36 LLQSVLIKLTTGKISITTSSGEYITASGPMLIFLAKDQTIHITM 79 (291)
T ss_pred ecceEEEEeccceEEEEeCCCceEEeCCCeEEEEeCCcEEEEEe
Confidence 3468899999999999874 456999999999999999888776
No 143
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=21.65 E-value=2.3e+02 Score=27.92 Aligned_cols=57 Identities=21% Similarity=0.052 Sum_probs=31.9
Q ss_pred CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCc---EEEeCcccEEEEcCCCc
Q 013464 360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASH---NDAVAEGDVLFAPANTE 418 (442)
Q Consensus 360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~---~~~l~~G~~~~Ipa~~~ 418 (442)
.+--+..+++++.|...-.--+..-.-++|++|.... ++. ...+.+|.-+++||+..
T Consensus 33 ~~g~~~~~vkf~~g~~~pph~H~~~~~~~Vi~G~~~~--~~~~a~~~~l~~Gsy~~~PaG~~ 92 (251)
T PF14499_consen 33 KDGPSGMRVKFPAGFSSPPHIHNADYRGTVISGELHN--GDPKAAAMWLPAGSYWFQPAGEP 92 (251)
T ss_dssp TTS-EEEEEEE-TT-EE--BEESS-EEEEEEESEEEE--TTEE-----E-TTEEEEE-TT-E
T ss_pred cCCcceEEEEcCCCccCCCcceeeeEEEEEEEeEEEc--CCCcccceecCCCceEeccCCCc
Confidence 4556777899988865321112345678999996544 433 34599999999999954
No 144
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=21.46 E-value=13 Score=35.90 Aligned_cols=68 Identities=19% Similarity=0.099 Sum_probs=46.2
Q ss_pred CccccHHHHHhhCCC--cCCchhhhhcCCCCCceeeeeec--CCCC-ccccCCCHHHHH-HhcCcCC------CCCCCCC
Q 013464 89 GEIVSLKSWILKNPN--VLGDKVLHRWGCDLPFLFKVLSV--AKAL-SIQAHPDKELAK-TLHKLLP------NVYKDDN 156 (442)
Q Consensus 89 ~~~~~L~~li~~~p~--~lG~~~~~~~g~~lP~L~KvLda--~~~L-SIQVHPd~~~A~-~~~~~~~------~~Y~D~n 156 (442)
|.|..|..+=+++|+ ++|=.. ..|.+.|+|+. +..| -|-+...|..-- ..+..+. =+|+|||
T Consensus 58 G~G~~l~~~A~~nP~~nfiGiEi------~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPW 131 (227)
T COG0220 58 GMGEFLVEMAKKNPEKNFLGIEI------RVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPW 131 (227)
T ss_pred CCCHHHHHHHHHCCCCCEEEEEE------ehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCC
Confidence 457889999999998 889663 47788888875 3445 556777665432 1122221 3899999
Q ss_pred CCceeE
Q 013464 157 HKPEMA 162 (442)
Q Consensus 157 ~KpE~w 162 (442)
+|.-=+
T Consensus 132 pKkRH~ 137 (227)
T COG0220 132 PKKRHH 137 (227)
T ss_pred CCcccc
Confidence 998554
No 145
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=21.35 E-value=1.4e+02 Score=27.88 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=18.7
Q ss_pred EEEeCcccEEEEcCCCcEEEEec--CcEEEEE
Q 013464 402 NDAVAEGDVLFAPANTEINITTS--SKLQLYR 431 (442)
Q Consensus 402 ~~~l~~G~~~~Ipa~~~~~i~~~--~~~~~~~ 431 (442)
+..|.+||++|||++---.+++. +++.|-.
T Consensus 210 ~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisv 241 (251)
T PF13621_consen 210 EVVLEPGDVLFIPPGWWHQVENLSDDDLSISV 241 (251)
T ss_dssp EEEEETT-EEEE-TT-EEEEEESTTSSCEEEE
T ss_pred EEEECCCeEEEECCCCeEEEEEcCCCCeEEEE
Confidence 35789999999999987666654 4444444
Done!