BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013465
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H07|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase From Yersinia Pestis Co92
pdb|3H07|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase From Yersinia Pestis Co92
Length = 220
Score = 185 bits (469), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 121/174 (69%), Gaps = 2/174 (1%)
Query: 45 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVD 104
++ AA+ T E MA ++HG+GIVC+ + E ++LDLP+MV N + TAFTVT++
Sbjct: 46 MVFAAEAMTLEQMALTIRHGSGIVCLCITDERRQQLDLPMMVTH--NSSQFQTAFTVTIE 103
Query: 105 AKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDL 164
A G TTGVSA DR TT+ + ++KP D NRPGH+FPL+ + GGVL R GHTEAS+DL
Sbjct: 104 AAEGVTTGVSAADRLTTIRKAIADNAKPADLNRPGHVFPLRGQPGGVLSRRGHTEASIDL 163
Query: 165 AVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDK 218
A LAG+ PA VLCE+ +DDGSMA P++ FAK ++ +++I DL Y + R K
Sbjct: 164 ATLAGYKPAGVLCELTNDDGSMAHAPEVIAFAKLHDMPVVTIDDLAAYLQSRAK 217
>pdb|1IEZ|A Chain A, Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Riboflavin Biosynthesis
Length = 217
Score = 185 bits (469), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 120/174 (68%), Gaps = 2/174 (1%)
Query: 45 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVD 104
+I A+ T E MA ++HG+GIVC+ + + ++LDLP+MV + N T FTVT++
Sbjct: 43 MIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMV--ENNTSAYGTGFTVTIE 100
Query: 105 AKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDL 164
A G TTGVSA DR TTV + +KP D NRPGH+FPL+ + GGVL R GHTEA++DL
Sbjct: 101 AAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDL 160
Query: 165 AVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDK 218
LAGF PA VLCE+ +DDG+MAR P+ EFA + N+ +++I DL+ YR+ ++
Sbjct: 161 MTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHER 214
>pdb|2BZ0|A Chain A, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In
Complex With Gtp Analogue, Gmpcpp, And Zinc
pdb|2BZ0|B Chain B, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In
Complex With Gtp Analogue, Gmpcpp, And Zinc
Length = 196
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 93/190 (48%), Positives = 120/190 (63%), Gaps = 1/190 (0%)
Query: 222 RSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSAR 281
R + A++PT WG F + + G +H+A+V GDI +L RVHSECLTGD S R
Sbjct: 5 RVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLR 64
Query: 282 CDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGL 341
CDCG QL A+ QI GRG+L+Y R EGR IGL +K+RAY LQD G DTVEAN +LG
Sbjct: 65 CDCGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQLGF 123
Query: 342 PVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYL 401
D R++ + A M + LGV ++L+TNNP K L G+ + RVPLI N+ YL
Sbjct: 124 AADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEHYL 183
Query: 402 ETKRAKMGHI 411
+TK KMGH+
Sbjct: 184 DTKAEKMGHL 193
>pdb|1G57|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G57|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G58|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
pdb|1G58|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
Length = 217
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 120/174 (68%), Gaps = 2/174 (1%)
Query: 45 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVD 104
+I A+ T E MA ++HG+GIVC+ + + ++LDLP+MV + N T FTVT++
Sbjct: 43 MIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMV--ENNTSAYGTGFTVTIE 100
Query: 105 AKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDL 164
A G TTGVSA DR TTV + +KP D NRPGH+FPL+ + GGVL R GHTEA++DL
Sbjct: 101 AAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDL 160
Query: 165 AVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDK 218
LAGF PA VLCE+ +DDG+MAR P+ EFA + N+ +++I DL+ YR+ ++
Sbjct: 161 MTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHER 214
>pdb|3LQU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Complexed With Ribulose-5 Phosphate
pdb|3LQU|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Complexed With Ribulose-5 Phosphate
pdb|3LRJ|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|C Chain C, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|D Chain D, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LS6|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate And Zinc
pdb|3LS6|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate And Zinc
Length = 217
Score = 181 bits (459), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 45 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVD 104
+I A+ T E MA ++HG+GIVC+ + + ++LDLP+MV + N T FTVT++
Sbjct: 43 MIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMV--ENNTSAYGTGFTVTIE 100
Query: 105 AKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDL 164
A G TTGVSA DR TTV +KP D NRPGH+FPL+ + GGVL R GHTEA++DL
Sbjct: 101 AAEGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDL 160
Query: 165 AVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDK 218
LAGF PA VLCE+ +DDG+MAR P+ FA + N+ +++I DL+ YR+ ++
Sbjct: 161 MTLAGFKPAGVLCELTNDDGTMARAPECIAFAGQHNMAVVTIEDLVAYRQAHER 214
>pdb|2BZ1|A Chain A, Crystal Structure Of Apo E. Coli Gtp Cyclohydrolase Ii
Length = 196
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/190 (47%), Positives = 118/190 (62%), Gaps = 1/190 (0%)
Query: 222 RSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSAR 281
R + A++PT WG F + + G +H+A+V GDI +L RVHSECLTGD S R
Sbjct: 5 RVAEAKLPTPWGDFLXVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLR 64
Query: 282 CDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGL 341
CDCG QL A+ QI GRG+L+Y R EGR IGL +K+RAY LQD G DTVEAN +LG
Sbjct: 65 CDCGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQLGF 123
Query: 342 PVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYL 401
D R++ + A + LGV ++L+TNNP K L G+ + RVPLI N+ YL
Sbjct: 124 AADERDFTLCADXFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEHYL 183
Query: 402 ETKRAKMGHI 411
+TK K GH+
Sbjct: 184 DTKAEKXGHL 193
>pdb|3MGZ|A Chain A, Crystal Structure Of Dhbps Domain Of Bi-Functional
DhbpsGTP Cyclohydrolase Ii From Mycobacterium
Tuberculosis At Ph 4.0
pdb|3MIO|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis At Ph
6.00
pdb|3MIO|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis At Ph
6.00
Length = 206
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/175 (52%), Positives = 121/175 (69%), Gaps = 4/175 (2%)
Query: 45 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVD 104
LI AA+ ATPE +AF+V++ +G +CV + G +RL L M A N +K TA+TVTVD
Sbjct: 34 LIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAV--NQDKHGTAYTVTVD 91
Query: 105 AKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDL 164
A++G TG+SA DRATT+ LA S DF RPGH+ PL+ ++GGVL+R GHTEA+VDL
Sbjct: 92 ARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDL 151
Query: 165 AVLAGFDPAAVLCEVVD--DDGSMARLPKLREFAKRENLKIISIADLIRYRRKRD 217
A +AG PA +CE+V D+GSMA +LR FA L +I+IADLI +RRK +
Sbjct: 152 ARMAGLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHE 206
>pdb|3MK5|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis With
Sulfate And Zinc At Ph 4.00
Length = 212
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/175 (52%), Positives = 121/175 (69%), Gaps = 4/175 (2%)
Query: 45 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVD 104
LI AA+ ATPE +AF+V++ +G +CV + G +RL L M A N +K TA+TVTVD
Sbjct: 40 LIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAV--NQDKHGTAYTVTVD 97
Query: 105 AKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDL 164
A++G TG+SA DRATT+ LA S DF RPGH+ PL+ ++GGVL+R GHTEA+VDL
Sbjct: 98 ARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDL 157
Query: 165 AVLAGFDPAAVLCEVVD--DDGSMARLPKLREFAKRENLKIISIADLIRYRRKRD 217
A +AG PA +CE+V D+GSMA +LR FA L +I+IADLI +RRK +
Sbjct: 158 ARMAGLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHE 212
>pdb|1TKS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans
pdb|1TKS|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans
pdb|1TKU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans In Complex With
Ribulose-5-Phosphate
pdb|1TKU|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans In Complex With
Ribulose-5-Phosphate
pdb|2RIS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans- Alternate Interpretation
pdb|2RIU|A Chain A, Alternative Models For Two Crystal Structures Of Candida
Albicans 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase-
Alternate Interpreation
Length = 204
Score = 162 bits (409), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 116/172 (67%), Gaps = 3/172 (1%)
Query: 45 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVD 104
LIMAA+L T E MAF+V++ +G VCV + E +L+LP M+A + ++ TA+T+T D
Sbjct: 35 LIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLANR--SDRHGTAYTITCD 92
Query: 105 AKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDL 164
GTTTG+SA DRA T +LA+ +SKP DF +PGHI PL+ G + KR GHTEA+V L
Sbjct: 93 FAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQL 152
Query: 165 AVLAGFDPAAVLCEVV-DDDGSMARLPKLREFAKRENLKIISIADLIRYRRK 215
+ LAG PA V+CE+V D+DG M RL +F K+ +KII+I L+ Y K
Sbjct: 153 STLAGLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIININQLVEYISK 204
>pdb|1K49|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase (Cation Free Form)
pdb|1K4I|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Magnesium Ions
pdb|1K4L|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Manganese Ions
pdb|1K4O|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With One Manganese, And A Glycerol
pdb|1K4P|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Zinc Ions
Length = 233
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 110/185 (59%), Gaps = 14/185 (7%)
Query: 45 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVD 104
LI+AA+ T E MAF+V+H +G++C + E LDLP MV N + TA+TV+VD
Sbjct: 42 LIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLPQMVTH--NADPRGTAYTVSVD 99
Query: 105 AKH-GTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVD 163
A+H TTTG+SA DRA LA+ D++P F RPGH+FPL+ GGV R GHTEA V+
Sbjct: 100 AEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVE 159
Query: 164 LAVLAGFDPAAVLCEVVDDDGS-----------MARLPKLREFAKRENLKIISIADLIRY 212
L LAG P AV+ E+VDD M R + FA+R LK+ +I D+I +
Sbjct: 160 LCRLAGKRPVAVISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAH 219
Query: 213 RRKRD 217
K +
Sbjct: 220 VEKTE 224
>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|C Chain C, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
Length = 227
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 102/192 (53%), Gaps = 27/192 (14%)
Query: 45 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMV------AQKEN------- 91
+++A+Q TPE + + K G++C ++ + +L +P MV +QK
Sbjct: 31 MVVASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDILEFASQKFKVLRELYP 90
Query: 92 -----DEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLAS--RDSKPGDFNR----PGH 140
DEK ++F++T++ + T TG++ DRA T+ LA ++ + DF + PGH
Sbjct: 91 NDIPYDEK--SSFSITINHRK-TFTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGH 147
Query: 141 IFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKREN 200
+ L+ EG V R GHTE +V LA LA P +CE++ DDG+ + + +A++ N
Sbjct: 148 VTLLRAAEGLVKNRQGHTEMTVALAELANLVPITTICEMMGDDGNAMSKNETKRYAEKHN 207
Query: 201 LKIISIADLIRY 212
L +S ++I Y
Sbjct: 208 LIYLSGEEIINY 219
>pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1PVY|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1SNN|A Chain A, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
pdb|1SNN|B Chain B, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
Length = 227
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 101/192 (52%), Gaps = 27/192 (14%)
Query: 45 LIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMV------AQKEN------- 91
+++A+Q TPE + + K G++C ++ + +L +P MV +QK
Sbjct: 31 MVVASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDILEFASQKFKVLRELYP 90
Query: 92 -----DEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLAS--RDSKPGDFNR----PGH 140
DEK ++F++T++ + T TG++ DRA T+ LA ++ + DF + PG
Sbjct: 91 NDIPYDEK--SSFSITINHRK-TFTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGS 147
Query: 141 IFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKREN 200
+ L+ EG V R GHTE +V LA LA P +CE++ DDG+ + + +A++ N
Sbjct: 148 VTLLRAAEGLVKNRQGHTEMTVALAELANLVPITTICEMMGDDGNAMSKNETKRYAEKHN 207
Query: 201 LKIISIADLIRY 212
L +S ++I Y
Sbjct: 208 LIYLSGEEIINY 219
>pdb|2RAF|A Chain A, Crystal Structure Of Putative Dinucleotide-Binding
Oxidoreductase (Np_786167.1) From Lactobacillus
Plantarum At 1.60 A Resolution
pdb|2RAF|B Chain B, Crystal Structure Of Putative Dinucleotide-Binding
Oxidoreductase (Np_786167.1) From Lactobacillus
Plantarum At 1.60 A Resolution
pdb|2RAF|C Chain C, Crystal Structure Of Putative Dinucleotide-Binding
Oxidoreductase (Np_786167.1) From Lactobacillus
Plantarum At 1.60 A Resolution
Length = 209
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 88 QKENDEKLCTAFTVTVDA--KHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLK 145
Q+ D ++ AF T A + G G TTVL + DS F R PL+
Sbjct: 115 QQLPDSQVLKAFNTTFAATLQSGQVNG----KEPTTVLVAGNDDSAKQRFTRALADSPLE 170
Query: 146 YREGGVLKRAGHTEA 160
++ G LKRA EA
Sbjct: 171 VKDAGKLKRARELEA 185
>pdb|2D4Y|A Chain A, Crystal Structure Of A 49k Fragment Of Hap1 (Flgk)
pdb|2D4Y|B Chain B, Crystal Structure Of A 49k Fragment Of Hap1 (Flgk)
Length = 463
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 50 QLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGT 109
QLA A AF +H G KG+D + P++ + N +K TV++ AK
Sbjct: 236 QLALAFADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADK-----TVSLTAKVVD 290
Query: 110 TTGVSARD 117
+T V A D
Sbjct: 291 STKVQATD 298
>pdb|3UWC|A Chain A, Structure Of An Aminotransferase (Degt-Dnrj-Eryc1-Strs
Family) From Coxiella Burnetii In Complex With Pmp
Length = 374
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 18/98 (18%)
Query: 150 GVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDD---------GSMARLPKLREFAKREN 200
G + +AG T VD DP + + D G++A P L + AK+ N
Sbjct: 93 GAIVQAGATPVLVDSENGYVIDPEKIEAAITDKTKAIXPVHYTGNIADXPALAKIAKKHN 152
Query: 201 LKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAY 238
L I+ A R DK V WG F +
Sbjct: 153 LHIVEDACQTILGRINDKFVGS---------WGQFACF 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,254,019
Number of Sequences: 62578
Number of extensions: 503391
Number of successful extensions: 1123
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 16
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)