Query 013465
Match_columns 442
No_of_seqs 209 out of 1579
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:07:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09319 bifunctional 3,4-dihy 100.0 7E-135 1E-139 1066.0 41.6 410 15-429 5-418 (555)
2 PLN02831 Bifunctional GTP cycl 100.0 3E-134 6E-139 1048.3 42.7 409 15-423 35-444 (450)
3 PRK09311 bifunctional 3,4-dihy 100.0 3E-133 8E-138 1031.4 40.6 397 16-414 5-401 (402)
4 PRK09318 bifunctional 3,4-dihy 100.0 2E-132 3E-137 1019.1 37.7 383 19-416 2-384 (387)
5 PRK12485 bifunctional 3,4-dihy 100.0 1E-121 2E-126 934.9 38.6 365 15-390 3-368 (369)
6 PRK14019 bifunctional 3,4-dihy 100.0 2E-118 3E-123 912.8 38.5 363 15-390 3-365 (367)
7 PRK09314 bifunctional 3,4-dihy 100.0 3E-115 6E-120 877.0 35.4 335 16-389 4-339 (339)
8 PRK08815 GTP cyclohydrolase; P 100.0 1E-108 3E-113 841.2 33.9 350 15-415 17-368 (375)
9 COG0108 RibB 3,4-dihydroxy-2-b 100.0 3.6E-77 7.8E-82 558.3 22.2 199 16-217 4-202 (203)
10 PRK00910 ribB 3,4-dihydroxy-2- 100.0 2.7E-74 5.9E-79 548.7 22.6 200 16-217 15-214 (218)
11 PRK01792 ribB 3,4-dihydroxy-2- 100.0 9.4E-74 2E-78 543.6 22.9 199 16-216 14-212 (214)
12 PRK00014 ribB 3,4-dihydroxy-2- 100.0 2.4E-72 5.1E-77 537.7 22.5 200 16-217 19-218 (230)
13 TIGR00506 ribB 3,4-dihydroxy-2 100.0 1.1E-71 2.4E-76 525.7 22.1 196 16-213 3-199 (199)
14 PF00926 DHBP_synthase: 3,4-di 100.0 2.9E-72 6.3E-77 528.4 17.3 193 19-213 2-194 (194)
15 COG0807 RibA GTP cyclohydrolas 100.0 3.2E-69 6.9E-74 505.6 17.7 192 219-412 2-193 (193)
16 PRK03353 ribB 3,4-dihydroxy-2- 100.0 9.3E-68 2E-72 505.8 22.7 200 16-217 14-213 (217)
17 PRK05773 3,4-dihydroxy-2-butan 100.0 3.2E-67 7E-72 501.2 21.6 194 16-213 1-217 (219)
18 KOG1284 Bifunctional GTP cyclo 100.0 3.6E-62 7.7E-67 484.0 11.3 290 17-306 65-357 (357)
19 PRK00393 ribA GTP cyclohydrola 100.0 4.9E-60 1.1E-64 447.2 17.9 196 219-415 2-197 (197)
20 TIGR00505 ribA GTP cyclohydrol 100.0 5.3E-59 1.2E-63 438.1 17.4 191 221-412 1-191 (191)
21 PF00925 GTP_cyclohydro2: GTP 100.0 1.4E-58 3.1E-63 427.5 11.7 169 220-389 1-169 (169)
22 cd00641 GTP_cyclohydro2 GTP cy 100.0 1.1E-55 2.4E-60 416.1 17.5 193 219-412 1-193 (193)
23 PRK07198 hypothetical protein; 100.0 5.1E-42 1.1E-46 347.8 12.8 168 236-406 211-394 (418)
24 KOG1284 Bifunctional GTP cyclo 99.7 1.3E-18 2.9E-23 173.9 2.1 201 225-433 67-336 (357)
25 PRK14481 dihydroxyacetone kina 83.3 3.9 8.5E-05 42.4 7.5 88 238-362 35-127 (331)
26 TIGR02361 dak_ATP dihydroxyace 81.6 4 8.6E-05 45.4 7.2 88 238-361 33-125 (574)
27 PRK11468 dihydroxyacetone kina 79.8 6.6 0.00014 41.2 7.7 87 239-361 35-126 (356)
28 KOG3009 Predicted carbohydrate 77.3 8.7 0.00019 41.7 7.8 163 14-207 26-204 (614)
29 TIGR02363 dhaK1 dihydroxyaceto 77.2 7.2 0.00016 40.5 7.0 88 238-361 35-127 (329)
30 PRK14479 dihydroxyacetone kina 73.6 8.6 0.00019 42.7 7.0 87 238-361 34-125 (568)
31 TIGR02362 dhaK1b probable dihy 73.5 9.4 0.0002 39.6 6.8 87 238-361 32-123 (326)
32 PRK14483 DhaKLM operon coactiv 71.3 12 0.00026 38.9 7.0 87 238-361 34-125 (329)
33 PTZ00375 dihydroxyacetone kina 66.7 15 0.00032 41.1 6.9 87 238-361 37-128 (584)
34 PF02733 Dak1: Dak1 domain; I 66.3 4.2 9.1E-05 42.1 2.4 86 239-361 20-110 (325)
35 COG1560 HtrB Lauroyl/myristoyl 58.8 37 0.00081 34.9 7.7 105 3-127 161-276 (308)
36 KOG2426 Dihydroxyacetone kinas 55.0 70 0.0015 35.2 9.1 93 232-365 31-132 (582)
37 PLN02398 hydroxyacylglutathion 44.3 3.6E+02 0.0078 28.0 12.3 139 153-311 103-246 (329)
38 COG3473 Maleate cis-trans isom 41.1 26 0.00057 34.5 3.2 90 349-438 107-214 (238)
39 PF13420 Acetyltransf_4: Acety 40.3 21 0.00046 31.0 2.3 36 353-388 103-141 (155)
40 PF13263 PHP_C: PHP-associated 39.8 20 0.00044 27.2 1.8 19 190-208 5-23 (56)
41 PRK08296 hypothetical protein; 38.7 33 0.00072 38.5 3.9 67 42-110 528-599 (603)
42 PF00332 Glyco_hydro_17: Glyco 37.5 23 0.0005 36.3 2.3 39 350-388 17-55 (310)
43 PF03437 BtpA: BtpA family; I 35.8 87 0.0019 31.4 6.0 106 40-187 49-155 (254)
44 PF00391 PEP-utilizers: PEP-ut 34.3 26 0.00056 28.4 1.7 66 42-107 9-79 (80)
45 TIGR02990 ectoine_eutA ectoine 31.8 1.3E+02 0.0029 29.6 6.6 93 286-391 57-156 (239)
46 PF08584 Ribonuc_P_40: Ribonuc 30.8 2.7E+02 0.0059 28.0 8.7 90 16-123 5-95 (284)
47 PRK05878 pyruvate phosphate di 30.6 2.2E+02 0.0047 31.6 8.5 115 44-171 381-510 (530)
48 PRK06354 pyruvate kinase; Prov 28.6 1.2E+02 0.0025 34.2 6.1 65 44-109 512-581 (590)
49 COG0223 Fmt Methionyl-tRNA for 27.8 1.8E+02 0.0039 30.0 6.9 135 160-297 13-174 (307)
50 TIGR03413 GSH_gloB hydroxyacyl 27.8 5.8E+02 0.012 24.8 11.5 128 161-310 33-165 (248)
51 COG1926 Predicted phosphoribos 27.7 1.3E+02 0.0028 29.7 5.5 49 27-75 123-185 (220)
52 KOG0875 60S ribosomal protein 26.2 55 0.0012 32.9 2.7 72 42-116 70-160 (264)
53 cd03109 DTBS Dethiobiotin synt 26.0 1.4E+02 0.0029 26.4 5.0 51 154-205 81-131 (134)
54 PRK06464 phosphoenolpyruvate s 25.4 99 0.0022 35.9 5.0 115 41-176 384-507 (795)
55 PF08369 PCP_red: Proto-chloro 24.3 1.1E+02 0.0024 22.5 3.4 23 189-211 21-43 (45)
56 PF06794 UPF0270: Uncharacteri 24.1 1.2E+02 0.0025 24.9 3.7 21 18-38 39-59 (70)
57 PRK14719 bifunctional RNAse/5- 24.0 1.4E+02 0.0031 31.3 5.4 54 348-403 55-116 (360)
58 PF00107 ADH_zinc_N: Zinc-bind 21.8 43 0.00093 28.3 0.9 32 350-382 5-36 (130)
59 KOG1351 Vacuolar H+-ATPase V1 21.1 1.1E+02 0.0023 32.1 3.6 46 107-171 145-190 (489)
60 PRK10241 hydroxyacylglutathion 20.7 7.9E+02 0.017 23.9 10.9 65 233-311 98-167 (251)
61 PRK07505 hypothetical protein; 20.6 1.1E+02 0.0023 31.7 3.7 34 171-204 180-213 (402)
62 PLN02880 tyrosine decarboxylas 20.4 1.8E+02 0.0039 31.6 5.6 51 153-203 221-272 (490)
63 COG4130 Predicted sugar epimer 20.2 99 0.0021 30.9 3.1 58 158-219 19-81 (272)
No 1
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=100.00 E-value=6.6e-135 Score=1065.95 Aligned_cols=410 Identities=56% Similarity=0.907 Sum_probs=395.1
Q ss_pred cCChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCc
Q 013465 15 LLSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEK 94 (442)
Q Consensus 15 ~~~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~ 94 (442)
..+.++++++||+|+||||+||++||||||||+|||++|++.||||++|++|+||+||++++|++|+||+|+.. |++.
T Consensus 5 ~~~Ie~Ai~aLr~G~~VvV~Dde~REnEgDLV~aAE~~T~e~infm~r~a~GliClamt~~ra~~L~Lp~Mv~~--n~~~ 82 (555)
T PRK09319 5 FDSIDDALAAIRNGECVVVVDDENRENEGDLICAAQFATPEMINFMATEARGLICLAMTGERLDELDLPLMVDR--NTDS 82 (555)
T ss_pred cccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhcCCCeeeccCHHHHhhcCCCccccc--CCCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999986 7777
Q ss_pred cCCceEEEEecC--CCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCc
Q 013465 95 LCTAFTVTVDAK--HGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDP 172 (442)
Q Consensus 95 ~~t~ftvsVDa~--~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~P 172 (442)
++++|||||||+ .|++|||||.|||+|||+||||.++|.||++|||||||++++|||++|+|||||||||||||||.|
T Consensus 83 ~~taFtVsVDa~~~~g~tTGISA~DRa~TIr~ladp~~~~~Df~rPGHvfPL~A~~GGvl~R~GHTEAAVDLarLAGL~P 162 (555)
T PRK09319 83 NQTAFTVSIDAGPELGVSTGISAEDRARTIQVAINPDTKPEDLRRPGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLYP 162 (555)
T ss_pred CCceEEEEEeccccCCCCCCcCHHHHHHHHHHHhCCCCChhhcCCCCCccceeeccCCCCCCCChHHHHHHHHHHcCCCc
Confidence 889999999987 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHHhhccccccccccceecCcCccEEEEEEEecCCCcEEEEE
Q 013465 173 AAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAM 252 (442)
Q Consensus 173 aavi~ell~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~e~lV~r~~~~~lpT~~G~F~~~~f~~~~~g~eH~AL 252 (442)
+||||||+++||+|||++++.+||++|+||+|+|+|||+||.++|++|++++++++||.||+|++++|++..++.||+||
T Consensus 163 aaVicEi~~~dG~mar~~~l~~fA~~h~L~iisi~dLi~yR~~~e~~V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHvAL 242 (555)
T PRK09319 163 AGVICEIQNPDGSMARLPELKEYAKQHGLKLISIADLISYRLQNERFVYREAVAKLPSQFGQFQAYGYRNELDGSEHVAL 242 (555)
T ss_pred eEEEEEEecCCCCccCHHHHHHHHHHcCCcEEEhHHhHHHHhhccccceEEEEEeeecCCccEEEEEEEeCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCC--CCceeEEEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCCchHHHhhhhhcccCCC
Q 013465 253 VKGDIGD--GQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGR 330 (442)
Q Consensus 253 v~Gdi~~--~~~vlVRVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~ 330 (442)
++|++.. ++||||||||+|+|||+|||.+|||++||++||++|+++|.||||||| ||||||||.||+++|.|||+|+
T Consensus 243 vkGd~~~~~~~pvLVRVHSeClTGDvfgS~rCDCg~QL~~AL~~Ia~eG~GVlVYLr-qEGRGiGL~nKl~aY~LQd~G~ 321 (555)
T PRK09319 243 VKGDPANFKDEPVLVRMHSECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYLR-QEGRGIGLINKLKAYSLQDGGL 321 (555)
T ss_pred EcCCcccccCCCceEEEeccCcHHHHhcCCCCCCHHHHHHHHHHHHhcCCEEEEEeC-CCCcchhHHHHHHHHhhhhcCC
Confidence 9999963 579999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred CchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcCcccccccCCeEEEEEeecCCCCChhhHHHHHHHHHhcCC
Q 013465 331 DTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 410 (442)
Q Consensus 331 DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~~irLLTNNP~K~~aL~~~Gi~V~~rvpl~~~~~~~n~~Yl~tK~~k~gH 410 (442)
||++||..+||+.|.|+||+|||||++|||++||||||||+|+.+|++|||+|++++|+++++|++|++||+||++||||
T Consensus 322 DTveAn~~lG~~~D~RdYgigAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl~~~~~~~n~~YL~tK~~k~gH 401 (555)
T PRK09319 322 DTVEANERLGFPADLRNYGVGAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPLLIEANDYNAEYLATKAEKLGH 401 (555)
T ss_pred ChhhhhhhcCCcccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecccCCCCcchhHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccCCCC
Q 013465 411 IYGLESNGRLTNLINGNGK 429 (442)
Q Consensus 411 ~l~~~~~~~~~~~~~~~~~ 429 (442)
+|+.+.-. +..|.-+++
T Consensus 402 ~l~~~~~~--~~~~~~~~~ 418 (555)
T PRK09319 402 LLLQTYLV--TIAIAWDGE 418 (555)
T ss_pred ccCCCccc--cEEEEecCC
Confidence 99876533 445555554
No 2
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=100.00 E-value=2.9e-134 Score=1048.33 Aligned_cols=409 Identities=81% Similarity=1.270 Sum_probs=398.1
Q ss_pred cCChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCc
Q 013465 15 LLSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEK 94 (442)
Q Consensus 15 ~~~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~ 94 (442)
..+.++++++||+|+||||+||++||||||||+|||++|++.||||++|++|+||+||++++|++|+||+|+....|++.
T Consensus 35 ~~~ve~ai~~lr~G~~Viv~Dd~~rEnegdLv~aAe~~t~e~v~fm~~~~~GliC~~lt~~ra~~L~Lp~m~~~~~n~~~ 114 (450)
T PLN02831 35 FSSIAEALEDIRQGKFVVVVDDEDRENEGDLIMAASLVTPEAMAFLVKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEK 114 (450)
T ss_pred cCcHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHHHHhCCCceEEecCHHHHhhcCCCcccccccCCcc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999975457777
Q ss_pred cCCceEEEEecCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCccE
Q 013465 95 LCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAA 174 (442)
Q Consensus 95 ~~t~ftvsVDa~~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~Paa 174 (442)
++++||||||+++|++|||||.|||+|||+||+|.++|+||++|||||||++++||+++|+|||||||||||||||.|++
T Consensus 115 ~~t~ftvsVd~~~g~~TGISa~dRa~Tir~lad~~~~~~df~~PGHvfPL~a~~ggvl~R~GhtEaavdLarlAgl~Paa 194 (450)
T PLN02831 115 MATAFTVTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGHIFPLRYREGGVLKRAGHTEAAVDLAVLAGLPPVG 194 (450)
T ss_pred cCCCceEEEecCCCcccccchHHHHHHHHHHhCcCCChhhcCCCCcccceeecccCccCCCChHHHHHHHHHHcCCCceE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCC-CCCcCChhHHHHHHHhcCCceEehHHHHHHHhhccccccccccceecCcCccEEEEEEEecCCCcEEEEEE
Q 013465 175 VLCEVVDD-DGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMV 253 (442)
Q Consensus 175 vi~ell~~-dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~e~lV~r~~~~~lpT~~G~F~~~~f~~~~~g~eH~ALv 253 (442)
|||||+++ ||+||+.+++.+||++|+||+++|+|||+||..+|++|++++++++||.||+|++++|++..++.||+||+
T Consensus 195 vi~Ei~~~~dG~m~~~~~~~~fA~~h~L~~v~i~dli~yr~~~e~lV~rv~~~~lpT~~G~F~~~~yr~~~~g~eHlALv 274 (450)
T PLN02831 195 VLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKLVERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFV 274 (450)
T ss_pred EEEEeccCCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHhhccccccccceeeeecCCCCEEEEEEEeCCCCeEEEEEE
Confidence 99999995 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCceeEEEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCCchHHHhhhhhcccCCCCch
Q 013465 254 KGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTV 333 (442)
Q Consensus 254 ~Gdi~~~~~vlVRVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~DT~ 333 (442)
+|++..++||||||||+|+|||+|||.+|||++||++||++|+++|+|||||||+||||||||.+|+++|.+|++|+||+
T Consensus 275 ~Gd~~~~~~vLVRVHSec~tgDvfgs~rCdCg~qL~~Al~~I~~~G~GVlvYLr~qegrgigl~~Kl~ay~lq~~g~dt~ 354 (450)
T PLN02831 275 KGDIGDGQDVLVRVHSECLTGDIFGSARCDCGNQLALAMQLIEKAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTV 354 (450)
T ss_pred eCCcCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEcCCCcccchHHHHHHHHhcccccCcch
Confidence 99998888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcCcccccccCCeEEEEEeecCCCCChhhHHHHHHHHHhcCCCCC
Q 013465 334 EANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYG 413 (442)
Q Consensus 334 eAn~~lg~~~D~Rdygi~aqIL~~LGv~~irLLTNNP~K~~aL~~~Gi~V~~rvpl~~~~~~~n~~Yl~tK~~k~gH~l~ 413 (442)
+||.+||++.|.|+||+|||||++|||++||||||||.|+.+|++|||+|++++|++++++++|++||+||++||||++.
T Consensus 355 eAn~~lg~~~D~RdygigAqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp~~~~~~~~n~~Yl~tK~~k~gH~l~ 434 (450)
T PLN02831 355 EANEELGLPVDSREYGIGAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVPLLTPITKENKRYLETKRTKMGHVYG 434 (450)
T ss_pred hhhhhccCcccceehHHHHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEecccCCCChhhHHHHHHHHHHhCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccc
Q 013465 414 LESNGRLTNL 423 (442)
Q Consensus 414 ~~~~~~~~~~ 423 (442)
.++++.+..+
T Consensus 435 ~~~~~~~~~~ 444 (450)
T PLN02831 435 SDLGGHVSGL 444 (450)
T ss_pred CCCCCccccc
Confidence 9888876543
No 3
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=3.5e-133 Score=1031.36 Aligned_cols=397 Identities=62% Similarity=1.019 Sum_probs=390.1
Q ss_pred CChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCcc
Q 013465 16 LSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKL 95 (442)
Q Consensus 16 ~~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~~ 95 (442)
.+.+++|++||+|+||||+||++||||||||+|||.+|++.||||++|++|+||+||++++|++|+||+|+.. |++.+
T Consensus 5 ~~v~~ai~~lr~G~~Vvl~D~~~re~egdlv~aAe~~t~e~i~fm~~~~~Glic~~lt~~~a~~L~L~~m~~~--~~~~~ 82 (402)
T PRK09311 5 DSIEEAIADIAAGKAVIVVDDEDRENEGDLIFAAEKATPELVAFMVRHTSGYVCVPLTEEDADRLDLPPMVAH--NQDSH 82 (402)
T ss_pred chHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHHHHhCCCceEEecCHHHHhhCCCCccccc--CCCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999976 77888
Q ss_pred CCceEEEEecCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCccEE
Q 013465 96 CTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAV 175 (442)
Q Consensus 96 ~t~ftvsVDa~~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~Paav 175 (442)
+|+||||||++.|++|||||.|||+|||+||+|.++|+||++|||||||++++||+++|+|||||||||||||||.|+||
T Consensus 83 ~t~ftvsvd~~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~~lAgl~Paav 162 (402)
T PRK09311 83 GTAFTVSVDAANGVTTGISAADRATTIRLLADPASKPADFTRPGHVFPLRAKPGGVLRRAGHTEAAVDLARLAGLQPAGV 162 (402)
T ss_pred CCceEEEEEccCCcccccchhHHHHHHHHHhCccCChhhccCCCcccceeeccCCCccCCChHHHHHHHHHHcCCCceEE
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHHhhccccccccccceecCcCccEEEEEEEecCCCcEEEEEEEc
Q 013465 176 LCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKG 255 (442)
Q Consensus 176 i~ell~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~e~lV~r~~~~~lpT~~G~F~~~~f~~~~~g~eH~ALv~G 255 (442)
||||+++||+||+.+++++||++|+||+++++||++||.++|++|+++.++++||.||+|++++|++..++.||+||++|
T Consensus 163 i~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~dli~yr~~~e~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~ALv~G 242 (402)
T PRK09311 163 ICEIVNEDGTMARVPELRVFADEHDLALITIADLIAYRRRHEKLVEREVEARLPTRFGEFRAIGYTSILDGKEHVALVKG 242 (402)
T ss_pred EEEEecCCCcccchHHHHHHHHHcCCeEEEeechHHHHhhccccceeEEEEEeecCCccEEEEEEEECCCCeEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCCchHHHhhhhhcccCCCCchhh
Q 013465 256 DIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEA 335 (442)
Q Consensus 256 di~~~~~vlVRVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~DT~eA 335 (442)
++..++||||||||+|+|||+|||.+|||++||++||++|+++|.||||||++|||||+||.+|+++|.+|++|+||++|
T Consensus 243 d~~~~~~vlVRVHs~c~tgDvfgs~~cdc~~qL~~Al~~I~~eG~GvlvyL~~qegrg~gl~~Kl~ay~lq~~g~dt~~a 322 (402)
T PRK09311 243 DIGDGEDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMRGQEGRGIGLLHKLRAYQLQDEGYDTVDA 322 (402)
T ss_pred CCCCCCceeEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEecCCcccchHHHHHHHHhhhhcCCChhhh
Confidence 99888999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred hhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcCcccccccCCeEEEEEeecCCCCChhhHHHHHHHHHhcCCCCCC
Q 013465 336 NEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 414 (442)
Q Consensus 336 n~~lg~~~D~Rdygi~aqIL~~LGv~~irLLTNNP~K~~aL~~~Gi~V~~rvpl~~~~~~~n~~Yl~tK~~k~gH~l~~ 414 (442)
|..+|++.|.|+||+|||||++|||++||||||||.|+.+|++|||+|++++|+++.+|++|.+||+||++||||+|++
T Consensus 323 n~~lg~~~D~Rdyg~gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~~~~~~~~~n~~yl~tK~~~~gH~l~~ 401 (402)
T PRK09311 323 NLKLGFPADARDYGIGAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVPLPVRANEENERYLRTKRDRMGHDLDL 401 (402)
T ss_pred hhhcCCCccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEeccCCCCChhhHHHHHHHHHhccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999875
No 4
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=1.5e-132 Score=1019.15 Aligned_cols=383 Identities=41% Similarity=0.668 Sum_probs=369.9
Q ss_pred hHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCccCCc
Q 013465 19 RPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTA 98 (442)
Q Consensus 19 ~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~~~t~ 98 (442)
++++++||+|+||||+|+ +||||||||+||+++|||.||||++|++|+||+||++++|++|+||+|+. |. .+|+
T Consensus 2 ~~ai~al~~G~~viv~D~-~REnEgdlv~aA~~~t~e~i~fm~~~~~Glic~~~~~~~~~~l~l~~m~~---~~--~~~a 75 (387)
T PRK09318 2 EELREAFLEGKPVILIDR-NRENEADFVYPAQIITEEVVNFFLSYGKGLLCLTADEEDLLKRGFFKLPS---NG--GETN 75 (387)
T ss_pred HHHHHHHHCCCeEEEEeC-CCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhcCCccccC---CC--CCCC
Confidence 689999999999999997 89999999999999999999999999999999999999999999999984 32 4689
Q ss_pred eEEEEecCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCccEEEEE
Q 013465 99 FTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCE 178 (442)
Q Consensus 99 ftvsVDa~~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~Paavi~e 178 (442)
|||||||+ .+|||||.|||+|||+||+ .++|.||++|||||||.+. |+++|+||||||||||||||+.|+|||||
T Consensus 76 ftvsvd~~--~~TGISa~DRa~Tir~la~-~~~~~df~~PGHvfpL~~~--gvl~R~GhTEaavdL~~lAGl~p~~vice 150 (387)
T PRK09318 76 FFIPVDYG--TGTGISASERALTCRKLAE-GLYVHEFRYPGHVTLLGGI--GFNRRRGHTEASLELSELLGFKRYAVIVE 150 (387)
T ss_pred EEEEEcCC--CCCCcCHHHHHHHHHHHHh-cCCHHHhcCCCccCCCCCc--cccccCCcHHHHHHHHHHcCCCceEEEEE
Confidence 99999985 4599999999999999999 6679999999999999875 78999999999999999999999999999
Q ss_pred EeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHHhhccccccccccceecCcCccEEEEEEEecCCCcEEEEEEEccCC
Q 013465 179 VVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG 258 (442)
Q Consensus 179 ll~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~e~lV~r~~~~~lpT~~G~F~~~~f~~~~~g~eH~ALv~Gdi~ 258 (442)
|+++||+|||.+++++||++|+||+++|+|||+||.++|++|++++++++||.||+|++++|++..++.||+||++|++.
T Consensus 151 i~~~dG~m~~~~~~~~fA~~h~l~~i~i~dli~~r~~~e~~V~~v~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~g~~~ 230 (387)
T PRK09318 151 ILDEKGDSHDLDYVLKLAEKFSLPVLEIDDVWKEFVRRKQLIKVKAEAKLPTDYGEFEIVSFENHLDGKEHVAIVKEPLG 230 (387)
T ss_pred EecCCCccccHHHHHHHHHHCCCcEEEHHHHHHHHHhccCceEEEEEEecccCcccEEEEEEEeCCCCcEEEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCceeEEEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCCchHHHhhhhhcccCCCCchhhhhh
Q 013465 259 DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEE 338 (442)
Q Consensus 259 ~~~~vlVRVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~DT~eAn~~ 338 (442)
+||||||||+|+|||+|||.+|||++||++||++|+++| ||||||| |||||+||.+|+++|.+|++|+||++||..
T Consensus 231 --~~vLVRVHSec~tgDvfgs~~CdCg~qL~~Al~~Ia~eG-GvlvYLr-qegrgigl~~Kl~ay~lq~~g~dt~eAn~~ 306 (387)
T PRK09318 231 --EVPLVRIHSECVTGDTLSSLRCDCGSQLANFLRMISKEG-GILIYLR-QEGRGIGLSNKIKAYELQDKGLDTVEANRA 306 (387)
T ss_pred --CCceEEEeecccHHHHhcCCCCCCcchHHHHHHHHHHcC-CEEEEEC-CCCcchhHHHHHHHHhhhhcCCCchhhhhh
Confidence 489999999999999999999999999999999999999 9999998 999999999999999999999999999999
Q ss_pred cCCCCCCcChhHHHHHHHHcCCCeeeeccCCcCcccccccCCeEEEEEeecCCCCChhhHHHHHHHHHhcCCCCCCCC
Q 013465 339 LGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLES 416 (442)
Q Consensus 339 lg~~~D~Rdygi~aqIL~~LGv~~irLLTNNP~K~~aL~~~Gi~V~~rvpl~~~~~~~n~~Yl~tK~~k~gH~l~~~~ 416 (442)
+||+.|.|+||+|||||++|||++||||||||.|+.+|++|||+|++++|++.++|++|++||+||++||||+|+...
T Consensus 307 lg~~~D~RdygigAqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl~~~~~~~n~~Yl~tK~~k~gH~l~~~~ 384 (387)
T PRK09318 307 LGFKEDERDYAAAFQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPLYGEVTKYNRFYLKTKVEKLGHKLELRE 384 (387)
T ss_pred cCCCccceeeeHHHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEeccCCCCCchhHHHHHHHHHhhCCCcCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998743
No 5
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=1.1e-121 Score=934.93 Aligned_cols=365 Identities=41% Similarity=0.652 Sum_probs=348.4
Q ss_pred cCChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCc
Q 013465 15 LLSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEK 94 (442)
Q Consensus 15 ~~~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~ 94 (442)
..+.++++++|++|+||||+||++||||||||+||+++|||.||||++|++|+||+||++++|++|+||+|++. |++.
T Consensus 3 ~~~i~~ai~~l~~G~~viv~Dd~~rE~egdlv~~A~~~t~e~i~fm~~~~~Glic~~l~~~~~~~L~Lp~m~~~--~~~~ 80 (369)
T PRK12485 3 FNTIEEIIEDYRQGKMVLLVDDEDRENEGDLLLAAERCDAQAINFMAREARGLICLTLTDEHCQRLGLEQMVPS--NGSV 80 (369)
T ss_pred cccHHHHHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCceEEEeCCHHHHhhCCCCccccc--CCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999986 8888
Q ss_pred cCCceEEEEecCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCccE
Q 013465 95 LCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAA 174 (442)
Q Consensus 95 ~~t~ftvsVDa~~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~Paa 174 (442)
++++|||||||+.|++|||||.|||+|||+||+|+++|+||++|||||||++++||+++|+||||||||||||||+.|++
T Consensus 81 ~~~~ftvsvda~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHvfpl~a~~ggvl~R~GhtEaavdL~~lAgl~p~a 160 (369)
T PRK12485 81 FSTAFTVSIEAATGVTTGISAADRARTVAAAVAPNARPEDLVQPGHIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPAS 160 (369)
T ss_pred CCCCEEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCeeCeEEecCCCCCCCCChHHHHHHHHHHcCCCceE
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHHhhccccccccccceecCcCccEEEEEEEecCCCcEEEEEEE
Q 013465 175 VLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVK 254 (442)
Q Consensus 175 vi~ell~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~e~lV~r~~~~~lpT~~G~F~~~~f~~~~~g~eH~ALv~ 254 (442)
|||||+++||+||+.+++.+||++|+||+++|+||++||.++|++|+++.++++||.||+|++++|++..++.||+||++
T Consensus 161 vi~ei~~~dg~m~~~~~~~~fA~~h~l~~i~i~~li~yr~~~e~~V~~v~~~~lpT~~G~f~~~~y~~~~~g~eHvALv~ 240 (369)
T PRK12485 161 VIVEVMNDDGTMARRPDLEVFAAKHGIKIGTIADLIHYRLSTEHTIKRIGERELPTVHGTFRLVTYEDRIEGGVHMAMVM 240 (369)
T ss_pred EEEEEecCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHHhccccceeEEEEEeecCCCCEEEEEEEeCCCCeEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceeEEEcccCcccccccCCCC-CChHHHHHHHHHHHHcCCEEEEEEeCCCCCCCchHHHhhhhhcccCCCCch
Q 013465 255 GDIGDGQDILVRVHSECLTGDIFGSARC-DCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTV 333 (442)
Q Consensus 255 Gdi~~~~~vlVRVHS~CltgDvfgS~~C-dCg~qL~~Al~~I~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~DT~ 333 (442)
|++..++||||||||+|+|||+|||.+| ||+|||+.||++|+++|+|||||||+| ++++||.||+++|..|+.|++..
T Consensus 241 G~~~~~~~vlVRvHSecltgDv~gS~~c~d~g~qL~~Al~~I~~eG~GvlvYLr~~-~~~~gl~~kl~a~~~~~~~~~~~ 319 (369)
T PRK12485 241 GDIRREQPTLVRVHVIDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANH-ESSQALLERIPQLTQPPRQYQRS 319 (369)
T ss_pred CCCCCCCCceEEEecccchhhhhcCCCCCccHHHHHHHHHHHHHhCCEEEEEecCC-CchhhHHHHHHHHHhHhhCCCcc
Confidence 9998889999999999999999999876 999999999999999999999999955 56699999999998777676531
Q ss_pred hhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcCcccccccCCeEEEEEeecC
Q 013465 334 EANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLI 390 (442)
Q Consensus 334 eAn~~lg~~~D~Rdygi~aqIL~~LGv~~irLLTNNP~K~~aL~~~Gi~V~~rvpl~ 390 (442)
+ ..|.|+||+|||||++|||++|||| |||.|+.+|++|||+|++++|+.
T Consensus 320 d-------~r~~r~ygigAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~~vp~~ 368 (369)
T PRK12485 320 Q-------SRIYSEVGTGAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVESIPFP 368 (369)
T ss_pred c-------chhhhhhhHHHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEEEecCC
Confidence 1 2357799999999999999999999 78999999999999999999974
No 6
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=1.6e-118 Score=912.84 Aligned_cols=363 Identities=47% Similarity=0.751 Sum_probs=353.5
Q ss_pred cCChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCc
Q 013465 15 LLSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEK 94 (442)
Q Consensus 15 ~~~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~ 94 (442)
..+.++++++||+|+||||+||++||||||||+|||++|++.|+||++|++|+||+||++++|++|+||+|+.. |++.
T Consensus 3 ~~~i~~Ai~~lr~G~~Viv~D~~~re~egdlv~aAe~~t~e~v~fm~~~~~Glic~~lt~~ra~~L~L~~m~~~--~~~~ 80 (367)
T PRK14019 3 LASIEEIIADIRAGRMVILVDEEDRENEGDLVMAAEFVTPEAINFMAKHGRGLICLTLTEERCEQLGLPLMTYR--NGTQ 80 (367)
T ss_pred CccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhCCCCeEEecCHHHHhhcCCCccccc--CCCc
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999976 7788
Q ss_pred cCCceEEEEecCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCccE
Q 013465 95 LCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAA 174 (442)
Q Consensus 95 ~~t~ftvsVDa~~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~Paa 174 (442)
++++||||||+++|++|||||.|||+||+.||+++++|+||++|||||||++++||+++|+|||||||||||+|||.|++
T Consensus 81 ~~~~ftvsvd~~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHv~PL~a~~ggvl~R~GhtEaavdLarlAgl~Paa 160 (367)
T PRK14019 81 YGTNFTVSIEAAEGVTTGISAADRARTIQAAVARDAKPEDIVQPGHIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPAA 160 (367)
T ss_pred CCCceEEEEEcCCCccceeecHHHHHHHHHHhcCCCChhhcCCCCCccceeecccCcccCCCchHHHHHHHHHcCCCceE
Confidence 89999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHHhhccccccccccceecCcCccEEEEEEEecCCCcEEEEEEE
Q 013465 175 VLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVK 254 (442)
Q Consensus 175 vi~ell~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~e~lV~r~~~~~lpT~~G~F~~~~f~~~~~g~eH~ALv~ 254 (442)
|+|||++++|+||+.+++.+||++|+||+|+++||++||.++|++|++++++++||.||+|++++|++..++.||+||++
T Consensus 161 vi~ei~~~~g~~~~~~~~~~fA~~h~L~~v~i~dli~yr~~~~~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~Alv~ 240 (367)
T PRK14019 161 VICEIMKDDGTMARLPDLEEFAKEHGLKIGTIADLIHYRSRTESIVERVAERPMQTAHGEFRLVAYRDKPSGSTHLALVK 240 (367)
T ss_pred EEEEEecCCCcccchHHHHHHHHHcCCcEEEHHHHHHHHhhcccccccceeEeeccCCccEEEEEEEeCCCCcEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceeEEEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCCchHHHhhhhhcccCCCCchh
Q 013465 255 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVE 334 (442)
Q Consensus 255 Gdi~~~~~vlVRVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~DT~e 334 (442)
|++..++||||||||+|+|||+|||.+|||++||++||++|+++|+||||||+ ||||||||.||+++ |++
T Consensus 241 Gd~~~~~~vlVRvHS~c~tgDvfgs~~cdcg~qL~~al~~I~~~G~GvlvyL~-qegrgigl~~k~~~---------~~~ 310 (367)
T PRK14019 241 GTICPDEETLVRVHEPLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVLLN-CGDDGEHLLDRFRA---------EEA 310 (367)
T ss_pred CCcCCCCceeEEEeeccchHhHhcCCCCCcHHHHHHHHHHHHhcCCEEEEEEc-cCCchhhHHHhhhh---------hhh
Confidence 99988889999999999999999999999999999999999999999999998 99999999999986 457
Q ss_pred hhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcCcccccccCCeEEEEEeecC
Q 013465 335 ANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLI 390 (442)
Q Consensus 335 An~~lg~~~D~Rdygi~aqIL~~LGv~~irLLTNNP~K~~aL~~~Gi~V~~rvpl~ 390 (442)
||..+|++.|.|+|++|||||++|||++||||| ||.|+++|++|||+|++++|+.
T Consensus 311 an~~lg~~~d~R~y~igaqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~~~ 365 (367)
T PRK14019 311 AAALKRRPVDYRTYGIGAQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVPMP 365 (367)
T ss_pred hhhhcCCCcccceehHHHHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEecCC
Confidence 999999999999999999999999999999999 7999999999999999999974
No 7
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=2.7e-115 Score=876.97 Aligned_cols=335 Identities=42% Similarity=0.677 Sum_probs=321.6
Q ss_pred CChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCcc
Q 013465 16 LSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKL 95 (442)
Q Consensus 16 ~~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~~ 95 (442)
.+.++++++|++|+||||+||++||||||||+|||++|||.||||++|++|+||+||++++|++|+||+|+.. |++.+
T Consensus 4 ~~i~~ai~~l~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~i~fm~~~~~GliC~~~~~~~~~~L~Lp~mv~~--n~~~~ 81 (339)
T PRK09314 4 KRVEEAIEDIKNGKMLIMVDDEDRENEGDLVYAAIFSTPEKVNFMATHARGLICVSLTKELAKKLELPPMVSK--NTSNH 81 (339)
T ss_pred ccHHHHHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCCceEEECCHHHHhhCCCCccccc--CCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999986 78888
Q ss_pred CCceEEEEecCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCccEE
Q 013465 96 CTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAV 175 (442)
Q Consensus 96 ~t~ftvsVDa~~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~Paav 175 (442)
+|+|||||||+ +++|||||+|||+|||+||+|.++|.||++|||||||++++|||++|+||||||||||||||+.|++|
T Consensus 82 ~taFtvsVda~-~~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdLa~lAGl~p~~v 160 (339)
T PRK09314 82 ETAFTVSIDAK-EATTGISAFERDMTIKLLADDTSKPSDFVRPGHIFPLIAKDGGVLVRTGHTEGSVDLCKLAGLKPVAV 160 (339)
T ss_pred CCCeEEEEecC-CCCCCCCHHHHHHHHHHHhCCCCCHHHcCCCCceeeEEEcCCCcccCCCCCchhhHHHHHcCCCceEE
Confidence 99999999997 46999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHHhhccccccccccceecCcCccEEEEEEEecCCCcEEEEEEEc
Q 013465 176 LCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKG 255 (442)
Q Consensus 176 i~ell~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~e~lV~r~~~~~lpT~~G~F~~~~f~~~~~g~eH~ALv~G 255 (442)
|||||++||+|||.+++++||++|+||+++|+|||+||.++|++|++++++++||.||+|++++|++. ++.||+||++|
T Consensus 161 icEil~~dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~e~~v~~~~~~~lpt~~g~f~~~~y~~~-~~~eHlALv~G 239 (339)
T PRK09314 161 ICEIMKEDGTMARRDDLEDFAKKHNLKMIYVSDLVEYRLKNESLIKEEEKEESEFAGFKAEKYTFLDH-LQNEHIAFKFG 239 (339)
T ss_pred EEEEecCCCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHhcccceEEEEEEecCCCCccEEEEEEEcC-CCCEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 89999999999
Q ss_pred cCCCCCceeEEEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCCchHHHhhhhhcccCCCCchhh
Q 013465 256 DIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEA 335 (442)
Q Consensus 256 di~~~~~vlVRVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~DT~eA 335 (442)
++.. ||||||||+|+|||+|++ ||.+||+.||++|+++| ||||||| ||||+ +
T Consensus 240 ~~~~--~vlVRVHSec~tgd~l~~---~~~~qL~~Al~~I~~eG-GvlvYLr-qegr~---------------------a 291 (339)
T PRK09314 240 EIKL--TPNVKFHKIGSDFELLTS---DKFSELLKAIEYLKKNG-GVLIFLN-TESKE---------------------N 291 (339)
T ss_pred CCCC--CccEEEeccCChHHhhCC---CcHHHHHHHHHHHHHcC-CEEEEEc-CCCCC---------------------c
Confidence 9963 899999999999999985 45599999999999999 9999999 99874 2
Q ss_pred hhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCC-cCcccccccCCeEEEEEeec
Q 013465 336 NEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNN-PSKYVGLKGYGLAVAGRVPL 389 (442)
Q Consensus 336 n~~lg~~~D~Rdygi~aqIL~~LGv~~irLLTNN-P~K~~aL~~~Gi~V~~rvpl 389 (442)
| +.|+||+|||||++|||++||||||| |+|+.+|++|||+|++++.+
T Consensus 292 n-------~~RdygigaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~e~v~~ 339 (339)
T PRK09314 292 N-------QVKDYGIGAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIVETIEL 339 (339)
T ss_pred c-------cccchhHHHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEEEEEeC
Confidence 2 48999999999999999999999999 99999999999999999864
No 8
>PRK08815 GTP cyclohydrolase; Provisional
Probab=100.00 E-value=1.2e-108 Score=841.23 Aligned_cols=350 Identities=30% Similarity=0.469 Sum_probs=330.3
Q ss_pred cCChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCc
Q 013465 15 LLSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEK 94 (442)
Q Consensus 15 ~~~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~ 94 (442)
+.+.++++++||+|+||||+||++|| |||+|||++||+.+|||++|++|++|++|++++|++|+||+|.
T Consensus 17 ~~~ie~Ai~~lr~G~~Viv~Dde~Re---dLV~aAe~~t~e~infm~~~~~Glicl~lt~~ra~~L~L~~m~-------- 85 (375)
T PRK08815 17 AIRCERAAAELRAGRPVLLTDAQGQR---RAVIALDSSTAQSAAAFARAAQGRHYLFLTATRAQVLGLEAPQ-------- 85 (375)
T ss_pred hhHHHHHHHHHHCCCeEEEEcCCCCe---EEEEEhhhCCHHHHHHHHHhcCCceEEECCHHHHhhcCCCCCc--------
Confidence 45678999999999999999999995 9999999999999999999999999999999999999999992
Q ss_pred cCCceEEEEecCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCccE
Q 013465 95 LCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAA 174 (442)
Q Consensus 95 ~~t~ftvsVDa~~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~Paa 174 (442)
.||++|. || ++||++||+.++++ .|.||++|||||| ||||||||||||.|+|
T Consensus 86 ---~~t~~is-------~i-d~dRa~Ti~~~~~~--~~~d~~~PGHif~---------------EAavDLarLAGl~Paa 137 (375)
T PRK08815 86 ---GARVALP-------DV-DYDRLAALAYLRDG--RVPAPWAPGDALD---------------AGAVEIARLALLLPAM 137 (375)
T ss_pred ---CcEEeEe-------cc-hHHHHHHHHHHhcC--CccccCCCCCCcc---------------HHHHHHHHHcCCCceE
Confidence 1233332 33 37999999999999 5899999999997 9999999999999999
Q ss_pred EEEEEeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHHh-hccccccccccceecCcC-ccEEEEEEEecCCCcEEEEE
Q 013465 175 VLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRR-KRDKLVDRSSAARIPTMW-GPFTAYCYRSILDGIEHIAM 252 (442)
Q Consensus 175 vi~ell~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~-~~e~lV~r~~~~~lpT~~-G~F~~~~f~~~~~g~eH~AL 252 (442)
|||||+++++ + +|| +||+++|+|||+||. ++|++|++++++++||.| |+|++++|++..++.||+||
T Consensus 138 vi~Ei~~~~~--~------~fa---~L~i~tI~dLi~yR~~~~e~~v~~v~~~~lpt~~~g~f~~~~yr~~~~~~eH~AL 206 (375)
T PRK08815 138 VAVPLPVHDE--A------AFA---GCQALALADLDAGCATSAAAGYELVTRTPVPLRGLGMTEFVVFRGGVAQRDQVAI 206 (375)
T ss_pred EEEEEccCCC--h------hhC---CCcEeeHHHHHHHHHhCcccceEEEEEEecccCCcCcEEEEEEEeCCCCcEEEEE
Confidence 9999999743 2 777 999999999999998 889999999999999996 99999999999999999999
Q ss_pred EEccCCCCCceeEEEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCCchHHHhhhhhcccCCCCc
Q 013465 253 VKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDT 332 (442)
Q Consensus 253 v~Gdi~~~~~vlVRVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~DT 332 (442)
++|++++++||||||||+|+|||+|||.+|||++||++||++|+++|+||||||+ |||||+|+.+|+++|.+|++|+||
T Consensus 207 v~G~~~~~~~vlVRVHs~c~tgDvfgs~~cdc~~qL~~Al~~I~~~G~GVlvyL~-qegrg~gl~~kl~ay~lq~~g~dt 285 (375)
T PRK08815 207 VVGQPDLSSAVPVRVHSSCLTGDLFGSLKCDCGDQLRHGLAKLKELGGGVLLYLD-QEGRGNGIAAKMRAYGYQHAGLDT 285 (375)
T ss_pred EeCCCCCCCCceEEEeccCcHHHHhcCCCCCCHHHHHHHHHHHHhhCCEEEEEEc-CCCccchHHHHHHHHhhhhccCCc
Confidence 9999988889999999999999999999999999999999999999999999997 999999999999999999999999
Q ss_pred hhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcCcccccccCCeEEEEEeecCCCCChhhHHHHHHHHHhcCCCC
Q 013465 333 VEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIY 412 (442)
Q Consensus 333 ~eAn~~lg~~~D~Rdygi~aqIL~~LGv~~irLLTNNP~K~~aL~~~Gi~V~~rvpl~~~~~~~n~~Yl~tK~~k~gH~l 412 (442)
++||..+|++.|.|+||+|||||++|||++||||||||.|+.+|++|||+|++++|+++..|++|.+||+||++||||+|
T Consensus 286 ~~a~~~lg~~~D~RdygigAQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp~~~~~~~~n~~yl~tK~~~~gh~l 365 (375)
T PRK08815 286 IDADAQLGFGPDERRYGSAVAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIRVTGRITAENERYLRTKADRAGHAL 365 (375)
T ss_pred hhhhhhcCCCccceeeeHHHHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEeccCCCCCchhhhHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 013465 413 GLE 415 (442)
Q Consensus 413 ~~~ 415 (442)
+.+
T Consensus 366 ~~~ 368 (375)
T PRK08815 366 DVD 368 (375)
T ss_pred Ccc
Confidence 763
No 9
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=3.6e-77 Score=558.26 Aligned_cols=199 Identities=55% Similarity=0.898 Sum_probs=194.8
Q ss_pred CChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCcc
Q 013465 16 LSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKL 95 (442)
Q Consensus 16 ~~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~~ 95 (442)
.+.++++++||+|+||||+||++||||||||+||+++||+.||||++|++|+||+||++++|++|+||+|+.. |++.+
T Consensus 4 ~~ie~ai~al~~G~~Viv~DdedREnEgDli~aAe~vT~e~i~fm~~~a~GliC~~lt~e~~~~L~Lp~Mv~~--n~~~~ 81 (203)
T COG0108 4 ERVEEAIEALRAGKPVIVVDDEDRENEGDLIFAAEAVTPEQIAFMRRHASGLICVALTEERAKRLGLPPMVDN--NTDAH 81 (203)
T ss_pred hhHHHHHHHHHCCCeEEEEcCCCCCCcccEEEEhhhCCHHHHHHHHHhCCeeEEEeCCHHHHHhCCCcccccc--CCCCC
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999997 88899
Q ss_pred CCceEEEEecCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCccEE
Q 013465 96 CTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAV 175 (442)
Q Consensus 96 ~t~ftvsVDa~~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~Paav 175 (442)
+|+|||||||+. ++|||||.|||.|||.|+++.+.|+||++|||||||+|++|||++|+|||||+|||||||||.|++|
T Consensus 82 ~taFtVsVd~~~-t~TGISa~DRa~TIr~l~~~~~~~~df~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa~V 160 (203)
T COG0108 82 GTAFTVSVDARE-TTTGISAADRALTIRALADPGAKPSDFRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAGV 160 (203)
T ss_pred CCceEEEEeccc-CcCCcCHHHHHHHHHHHhcCCCCHHHcCCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCcEE
Confidence 999999999987 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHHhhcc
Q 013465 176 LCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRD 217 (442)
Q Consensus 176 i~ell~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~e 217 (442)
||||+++||+|||.+|+++||++||||+++|+|||+||.++|
T Consensus 161 icEi~~~dG~mar~~~~~~fa~~h~l~~iti~dli~yr~~~e 202 (203)
T COG0108 161 ICEIMNDDGTMARLPELEEFAKEHGLPVITIEDLIEYRKKHE 202 (203)
T ss_pred EEEEeCCCccccChHHHHHHHHHcCCcEEEHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999998766
No 10
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=2.7e-74 Score=548.65 Aligned_cols=200 Identities=46% Similarity=0.778 Sum_probs=195.7
Q ss_pred CChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCcc
Q 013465 16 LSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKL 95 (442)
Q Consensus 16 ~~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~~ 95 (442)
.+.++++++||+|+||||+||++||||||||+|||++|+|.||||++|++|+||+||++++|++|+||+|+.. |++.+
T Consensus 15 ~~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliC~a~~~~~~~~L~Lp~m~~~--n~~~~ 92 (218)
T PRK00910 15 TRVENALQALREGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCLTDAQADKLELPPMVVN--NNSAN 92 (218)
T ss_pred ccHHHHHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHhCCccEEEECCHHHHhhCCCCccccC--CCCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999975 78888
Q ss_pred CCceEEEEecCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCccEE
Q 013465 96 CTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAV 175 (442)
Q Consensus 96 ~t~ftvsVDa~~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~Paav 175 (442)
+|+||||||+++|++|||||.|||+|||+||+|.++|+||++|||||||++++|||++|+||||||||||||||+.|++|
T Consensus 93 ~taFtvsVda~~g~~TGISA~DRa~Tir~la~~~~~~~df~rPGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~v 172 (218)
T PRK00910 93 QTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGV 172 (218)
T ss_pred CCCeEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeCCCCEecCCCccHHHHHHHHHcCCCceEE
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHHhhcc
Q 013465 176 LCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRD 217 (442)
Q Consensus 176 i~ell~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~e 217 (442)
||||+++||+||+.+++++||++|+||+++|+|||+||+++|
T Consensus 173 icEil~~dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~~ 214 (218)
T PRK00910 173 LCELTNPDGTMAKTPEIIAFGKLHNMPVLTIEDMVMYRNQFD 214 (218)
T ss_pred EEEEecCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998877
No 11
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=9.4e-74 Score=543.65 Aligned_cols=199 Identities=50% Similarity=0.781 Sum_probs=194.3
Q ss_pred CChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCcc
Q 013465 16 LSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKL 95 (442)
Q Consensus 16 ~~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~~ 95 (442)
.+.++++++|++|+||||+||++||||||||+|||++|+|.||||++|++|+||+||++++|++|+||+|+.. |++.+
T Consensus 14 ~~i~~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~t~e~i~fm~~~~~GliC~a~~~~~~~~L~Lp~m~~~--n~~~~ 91 (214)
T PRK01792 14 ERVINAINAFKQGNGVLVLDDEDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCITDELCQQLDLPPMVQH--NTSVN 91 (214)
T ss_pred ccHHHHHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEEeCCHHHHhhCCCCccccc--CCCCC
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999986 78888
Q ss_pred CCceEEEEecCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCccEE
Q 013465 96 CTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAV 175 (442)
Q Consensus 96 ~t~ftvsVDa~~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~Paav 175 (442)
+|+|||||||++|++|||||.|||+|||+||+|.++|+||++|||||||++++|||++|+||||||||||||||+.|++|
T Consensus 92 ~taFtvsVda~~g~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~v 171 (214)
T PRK01792 92 KTAFTVTIEAAKGVSTGVSAADRVTTIQAAIADNAKPSDLHRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAGV 171 (214)
T ss_pred CCCEEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCccCCChHHHHHHHHHHcCCCceEE
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHHhhc
Q 013465 176 LCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKR 216 (442)
Q Consensus 176 i~ell~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~ 216 (442)
|||||++||+||+.+++++||++|+||+++|+|||+||.++
T Consensus 172 icEil~~dG~ma~~~~~~~fA~~~~l~~isi~dli~yr~~~ 212 (214)
T PRK01792 172 ICEITNDDGTMARTPEIVEFAKKFGYAVVTIEDLVEYRLKY 212 (214)
T ss_pred EEEEecCCCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999764
No 12
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=2.4e-72 Score=537.73 Aligned_cols=200 Identities=45% Similarity=0.718 Sum_probs=194.5
Q ss_pred CChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCcc
Q 013465 16 LSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKL 95 (442)
Q Consensus 16 ~~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~~ 95 (442)
.+.++++++|++|+||||+||++||||||||++||++|+|.||||+||++|+||+||++++|++|+||+|+.. |++.+
T Consensus 19 ~~i~~ai~al~~Gk~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliCva~~~~~a~~L~Lp~m~~~--n~~~~ 96 (230)
T PRK00014 19 TRLERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETLDRLELPPMVDS--NRSRY 96 (230)
T ss_pred hhHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEeeCCHHHHhhCCCCccccc--CCCCC
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999986 88888
Q ss_pred CCceEEEEecCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCccEE
Q 013465 96 CTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAV 175 (442)
Q Consensus 96 ~t~ftvsVDa~~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~Paav 175 (442)
+++||||||+++|++|||||.|||+|||+||++.++|+||++|||||||++++|||++|+||||||||||||||+.|++|
T Consensus 97 ~t~ftvSVDa~~gttTGISA~DRa~Tir~La~~~~~~~DF~rPGHVfPL~a~~gGvl~R~GHTEAavdLa~lAGl~P~~v 176 (230)
T PRK00014 97 STAFTVSIEAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPGHVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGV 176 (230)
T ss_pred CCCeEEEEEcCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEecCCCEecCCCccHHHHHHHHHcCCCceEE
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHHhhcc
Q 013465 176 LCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRD 217 (442)
Q Consensus 176 i~ell~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~e 217 (442)
|||||++||+||+.+++++||++|+||+++|+|||+||.+++
T Consensus 177 icEil~~dG~ma~~~~l~~fA~~~~l~iisi~dli~y~~~~~ 218 (230)
T PRK00014 177 LCELMNADGTMMRGASLERYAAKEGLVALAIDELAAHLQARG 218 (230)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999997553
No 13
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=100.00 E-value=1.1e-71 Score=525.69 Aligned_cols=196 Identities=53% Similarity=0.820 Sum_probs=189.8
Q ss_pred CChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCcc
Q 013465 16 LSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKL 95 (442)
Q Consensus 16 ~~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~~ 95 (442)
.+.++++++||+|+||||+||++||||||||+|||++|+|.||||++|++|+||+||++++|++|+||+|++. |++.+
T Consensus 3 ~~ie~ai~al~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~v~fm~~~~~GliC~~~~~~~a~~L~Lp~mv~~--n~~~~ 80 (199)
T TIGR00506 3 ERVEEALEALKKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMRRHAGGLICVAITPDIADKLDLPPMVDI--NTSAS 80 (199)
T ss_pred chHHHHHHHHHCCCeEEEEeCCCCCccEeEEEEhhhCCHHHHHHHHHhCCCCEEEECCHHHHhhCCCCccccc--cCCcC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999987 88888
Q ss_pred CCceEEEEecCCC-CCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCccE
Q 013465 96 CTAFTVTVDAKHG-TTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAA 174 (442)
Q Consensus 96 ~t~ftvsVDa~~g-~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~Paa 174 (442)
+++||+|||+.++ ++|||||.|||+|||+|+++.++|+||++|||||||++++|||++|+||||||||||||||+.|++
T Consensus 81 ~t~~t~sV~~~~~~~~TGISa~DRa~Tir~~a~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~~ 160 (199)
T TIGR00506 81 GTASTFTITVAHRKTFTGISANDRALTIRAALADVVKPSDFRRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAG 160 (199)
T ss_pred CCceEEEEEeCCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCceE
Confidence 9998888887666 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHH
Q 013465 175 VLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYR 213 (442)
Q Consensus 175 vi~ell~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr 213 (442)
|||||+++||+||+.+++++||++|+||+++|+|||+||
T Consensus 161 vicEil~~dG~m~~~~~~~~fA~~~~l~~isi~dli~yr 199 (199)
T TIGR00506 161 VICEMMNDDGTMARKPELMEYAKKHNLKLISIEDLIEYR 199 (199)
T ss_pred EEEEEeCCCCCccCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 999999999999999999999999999999999999996
No 14
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=100.00 E-value=2.9e-72 Score=528.35 Aligned_cols=193 Identities=57% Similarity=0.909 Sum_probs=179.2
Q ss_pred hHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCccCCc
Q 013465 19 RPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTA 98 (442)
Q Consensus 19 ~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~~~t~ 98 (442)
++++++|++|+||||+||++||||||||++|+++|++.||||++|++|+||+||++++|++|+||+|+.. |++.++++
T Consensus 2 e~ai~al~~G~~Viv~D~~~rE~egdlv~aAe~~t~e~v~fm~~~~~Glicva~~~~~~~~L~L~~m~~~--~~~~~~~~ 79 (194)
T PF00926_consen 2 EEAIEALKAGKPVIVVDDEDRENEGDLVFAAEFVTPEKVNFMIRHASGLICVAMPEERADRLGLPPMVPD--NTDPHGTA 79 (194)
T ss_dssp HHHHHHHHTTS-EEEECSSTTT-EEEEEEEGGG--HHHHHHHHHHBCSEEEEEEEHHHHHHTT-SBSCSS--CCTTTS--
T ss_pred HHHHHHHHCCCeEEEEeCCCCCcceeEEeEHHhCCHHHHHHHHHhcCCCeEecCCHHHHhHCCCCCCCCc--CCCCCCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999985 78889999
Q ss_pred eEEEEecCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCccEEEEE
Q 013465 99 FTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCE 178 (442)
Q Consensus 99 ftvsVDa~~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~Paavi~e 178 (442)
|||||||+.|++|||||.|||+|||+||++++.|+||++|||||||++++||+++|+||||||||||+|||++|++||||
T Consensus 80 ftvsVD~~~g~~TGISa~DRa~Tir~La~~~~~~~df~~PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~avi~e 159 (194)
T PF00926_consen 80 FTVSVDAAKGTTTGISAADRARTIRALADPDAFPEDFVRPGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAVICE 159 (194)
T ss_dssp BBCEEEESSS-SSSSSHHHHHHHHHHHHSTTGHGGGEEEEEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEEEEE
T ss_pred eeEeeecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHH
Q 013465 179 VVDDDGSMARLPKLREFAKRENLKIISIADLIRYR 213 (442)
Q Consensus 179 ll~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr 213 (442)
|+++||+||+.+++++||++|+||+++|+||++||
T Consensus 160 il~~dG~~~~~~~~~~fA~~~~l~~vsi~dli~yr 194 (194)
T PF00926_consen 160 ILDDDGDMARRDELEEFAKKHGLPIVSIEDLIEYR 194 (194)
T ss_dssp BBETTSSBHCHHHHHHHHHHTT-EEEEHHHHHHHH
T ss_pred EeCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 99999999999999999999999999999999997
No 15
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=100.00 E-value=3.2e-69 Score=505.62 Aligned_cols=192 Identities=58% Similarity=1.029 Sum_probs=188.5
Q ss_pred cccccccceecCcCccEEEEEEEecCCCcEEEEEEEccCCCCCceeEEEcccCcccccccCCCCCChHHHHHHHHHHHHc
Q 013465 219 LVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAA 298 (442)
Q Consensus 219 lV~r~~~~~lpT~~G~F~~~~f~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~ 298 (442)
.++++.++++||.||+|++++|++..++.+|+|+|+|++.. +||||||||||+|||+|+|.+|||++||+.||++|+++
T Consensus 2 ~ve~~~~a~lpt~~g~f~~~~y~~~~d~~~HlAlv~G~~~~-~~~lVRvHsEcltgDvl~s~rcdcg~ql~~al~~i~~~ 80 (193)
T COG0807 2 LVERVAEAKLPTELGEFRIVGYRDKIDGKEHLALVKGDISA-EPVLVRVHSECLTGDVLGSLRCDCGEQLEAALRRIAEE 80 (193)
T ss_pred ceeeeecccCCCCCceEEEEEEeccCCCceEEEEEecCCCC-CCceEEEeccccccchhcCCCCCcHHHHHHHHHHHhhc
Confidence 57889999999999999999999999999999999999976 78999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcCccccccc
Q 013465 299 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKG 378 (442)
Q Consensus 299 G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~~irLLTNNP~K~~aL~~ 378 (442)
|+||||||| ||||||||.||++||.|||.|.||++||.++||+.|.|+||+|||||++|||++||||||||+|+.+|.+
T Consensus 81 g~GVvvYLr-qEGrgigl~~ki~ay~lqd~g~dtv~an~~lg~~~D~R~ygigAqIL~dLGI~~irLLtnnp~K~~~l~~ 159 (193)
T COG0807 81 GSGVVVYLR-QEGRGIGLLNKIRAYALQDKGADTVEANLALGFPADERDYGIGAQILKDLGIKKIRLLTNNPRKIYGLEG 159 (193)
T ss_pred CceEEEEee-cCCccchHHHHHHHHHhhhcCCChHHHHHhhcCCchHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHh
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeecCCCCChhhHHHHHHHHHhcCCCC
Q 013465 379 YGLAVAGRVPLITPIKKENKRYLETKRAKMGHIY 412 (442)
Q Consensus 379 ~Gi~V~~rvpl~~~~~~~n~~Yl~tK~~k~gH~l 412 (442)
|||+|++|+|++...+++|+.||+||++||||++
T Consensus 160 ~Gi~vverv~~~~~~~~~n~~yl~tk~~k~gh~~ 193 (193)
T COG0807 160 FGINVVERVPLIVGANPENEFYLKTKKEKMGHLL 193 (193)
T ss_pred CCceEEEEeecCCCCCcchHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999986
No 16
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=9.3e-68 Score=505.83 Aligned_cols=200 Identities=50% Similarity=0.829 Sum_probs=195.6
Q ss_pred CChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCcc
Q 013465 16 LSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKL 95 (442)
Q Consensus 16 ~~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~~ 95 (442)
.+.+.++++||+|+||||+||++||||||||+|||.+|++.++||++|++|++|+++++++|++|+||+|+.. |++.+
T Consensus 14 ~~ve~Ai~~Lr~G~pViv~D~~~re~Egdlv~aAe~~t~e~v~fm~~~~~G~ic~~lt~~ra~~L~L~~m~~~--~~~~~ 91 (217)
T PRK03353 14 ERVEAALDALREGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMVEN--NTSQY 91 (217)
T ss_pred hHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeEhhhCCHHHHHHHHHhcCCceEEecCHHHHhhcCCCccccc--cCCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999986 78888
Q ss_pred CCceEEEEecCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCccEE
Q 013465 96 CTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAV 175 (442)
Q Consensus 96 ~t~ftvsVDa~~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~Paav 175 (442)
+++||||||++.|++|||||.||++|||.|+++.++|.||++|||||||++++||+++|+|||||||||||||||.|++|
T Consensus 92 ~~~ftvsVd~~~g~~TGISa~DRa~Tir~l~~~~~~~~df~~PGHv~pL~a~~ggvl~R~GhtEaavdLa~lAgl~P~av 171 (217)
T PRK03353 92 GTAFTVTIEAAEGVTTGVSAADRITTIRAAIADGAKPSDLNRPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPAGV 171 (217)
T ss_pred CCceEEEEECCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCccceeeccCCcccCCCchHHHHHHHHHcCCCceEE
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHHhhcc
Q 013465 176 LCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRD 217 (442)
Q Consensus 176 i~ell~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~e 217 (442)
||||+|+||+|++.+++.+||++|+||+++++||++||+++|
T Consensus 172 i~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~dli~~r~~~~ 213 (217)
T PRK03353 172 LCELTNDDGTMARAPECIAFAKQHNMPVLTIEDLVAYRQAHE 213 (217)
T ss_pred EEEeecCCCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998877
No 17
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=100.00 E-value=3.2e-67 Score=501.16 Aligned_cols=194 Identities=26% Similarity=0.385 Sum_probs=179.8
Q ss_pred CChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCcccccccc-----
Q 013465 16 LSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKE----- 90 (442)
Q Consensus 16 ~~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~----- 90 (442)
++.++++++||+|+||||+||++||||||||+||+++|||.||||++|++|+||+||++++|++|+||+|++...
T Consensus 1 ~~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~vT~e~i~fm~~~a~GliCval~~~~a~~L~Lp~m~~~~~~~~~~ 80 (219)
T PRK05773 1 MDFEEARKALESGIPVLIYDFDGREEEVDMVFYAGAVTWKSIYTLRKNAGGLICYATSNSEGKTLGLNFLAEILKRHELY 80 (219)
T ss_pred CCHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhCCCchhhhhccccccc
Confidence 478999999999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred ----CCCccC--CceEEEEecCCCCCCCCChhhHHHHHHHHhcC--------CCC----CCCCCCCCcccceeeccCCcc
Q 013465 91 ----NDEKLC--TAFTVTVDAKHGTTTGVSARDRATTVLTLASR--------DSK----PGDFNRPGHIFPLKYREGGVL 152 (442)
Q Consensus 91 ----~~~~~~--t~ftvsVDa~~g~~TGISa~DRA~Tir~LAd~--------~s~----~~df~~PGHV~Pl~a~~gGvl 152 (442)
|++.++ ++||||||| .|++|||||.|||+|||+||++ .+. |.||++|||||||+++ ||+
T Consensus 81 ~~~~~~~~~~~~taFtvsVd~-~~~~TGISa~DRa~Tir~La~~~~~~~~~~~~~~~~~~~df~~PGHVfpL~a~--Gvl 157 (219)
T PRK05773 81 RKLVKKPSYGDEPAFSLWVNH-VKTKTGISDYDRALTIRELHKVVELAKTNPEEAREEFYENFYSPGHVPILIGR--GIR 157 (219)
T ss_pred ccccccCCCCCCceEEEEEcC-CCCCCCcCHHHHHHHHHHHHhhhhccccCccccccCCHHHcCCCCCcceeccC--ccc
Confidence 334444 799999998 5999999999999999999984 222 7999999999999998 799
Q ss_pred ccCChhHHHHHHHHHcCCCccEEEEEEeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHH
Q 013465 153 KRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYR 213 (442)
Q Consensus 153 ~R~GhtEaavdLarlAGl~Paavi~ell~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr 213 (442)
+|+||||||||||||||+.|++|||||||++ .|++.+++++||++|+||+++|+||+++-
T Consensus 158 ~R~GHTEasvdLa~lAGl~P~~vicEil~~~-~~~~~~~~~~fA~~~~l~~isi~dli~~~ 217 (219)
T PRK05773 158 ERRGHTELSIALAQAAGLEPSAVIAEMLDEK-LSLSKEKAKKIAKNLGFPLVEGKEIFKEV 217 (219)
T ss_pred cCCChhHHHHHHHHHcCCCccEEEEEEeCCC-CCcCHHHHHHHHHHcCCcEEEHHHHHHHh
Confidence 9999999999999999999999999999974 59999999999999999999999999874
No 18
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.6e-62 Score=483.96 Aligned_cols=290 Identities=55% Similarity=0.783 Sum_probs=280.3
Q ss_pred ChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCccC
Q 013465 17 SPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLC 96 (442)
Q Consensus 17 ~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~~~ 96 (442)
+.++.|+.+|.|++|+|+||++|||||||++++...+++.++|.++|++|.+|+.|..+...+|.||+|+....+.+.+.
T Consensus 65 si~~ri~~~r~gk~~ivldd~~rdneg~L~~a~~~~~~~~~aF~vr~~~g~vd~~m~ga~~~~L~l~~~v~~~~~de~~~ 144 (357)
T KOG1284|consen 65 SIPARIPTFRHGKFVIVLDDEDRDNEGDLIIAAGNVIREDMAFLVRHGSGIVDVMMRGAYLGRLHLPLMVFEKNDDETYE 144 (357)
T ss_pred chhhhhhcccCCcEEEEEecccccCCCCcceecccccchhhhhhhhcCCceechhhhhcccccccccccccccccccccc
Confidence 45677888999999999999999999999999999999999999999999999999999999999999998544667789
Q ss_pred CceEEEEecCCCCCCCCChhhHHHHHHHHhc-CCCCCCCCCCCCcccceeec-cCCccccCChhHHHHHHHHHcCCCccE
Q 013465 97 TAFTVTVDAKHGTTTGVSARDRATTVLTLAS-RDSKPGDFNRPGHIFPLKYR-EGGVLKRAGHTEASVDLAVLAGFDPAA 174 (442)
Q Consensus 97 t~ftvsVDa~~g~~TGISa~DRA~Tir~LAd-~~s~~~df~~PGHV~Pl~a~-~gGvl~R~GhtEaavdLarlAGl~Paa 174 (442)
++|||+||.++|++||||++||+.|++.|++ ..+.|.||.+|||++|++.+ +|||++|.||||++||||.++|+.|.+
T Consensus 145 ~~~titvd~~~gt~TgVsahde~~T~~~l~s~~~~~pedf~rpghivpl~~~~~GGVl~r~ghtea~vdL~~l~gl~pl~ 224 (357)
T KOG1284|consen 145 TAFTITVDRAHGTVTGVSAHDEAYTGETLASARCDCPEDFDRPGHIVPLRYRLDGGVLERLGHTEAGVDLCELAGLYPLG 224 (357)
T ss_pred cceeEEEehhcCccceeEEecccccchhhcccccCChhhhccccccccceeecCCCeEEEccccccchhHHHHcCCCchh
Confidence 9999999999999999999999999999999 67889999999999999999 699999999999999999999999999
Q ss_pred EEEEEeCC-CCCcCChhHHHHHHHhcCCceEehHHHHHHHhhccccccccccceecCcCccEEEEEEEecCCCcEEEEEE
Q 013465 175 VLCEVVDD-DGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMV 253 (442)
Q Consensus 175 vi~ell~~-dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~e~lV~r~~~~~lpT~~G~F~~~~f~~~~~g~eH~ALv 253 (442)
++||++++ +|.|+++++++.||++|++|+++++|+++|+..+...|++++-++.||.||.|..++|++..++.||++.+
T Consensus 225 ~l~elv~q~~g~m~~lpd~r~fa~~~~i~~~~i~dliryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i~~~ 304 (357)
T KOG1284|consen 225 VLGELVVQADGSMARLPDCRSFAAEHAIPLISIEDLIRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGIASV 304 (357)
T ss_pred hhhhhhhcCCcccccCccHhhhhHhhcCChhhhhhHHHHHhcChhhhhcccCCCcCceeeeccccceeehhccccccccc
Confidence 99999988 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCceeEEEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEE
Q 013465 254 KGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYL 306 (442)
Q Consensus 254 ~Gdi~~~~~vlVRVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GVlvYL 306 (442)
+|.+......+||+|++|+++|+||+.+|+|+.||+-+|++|.+.|.|+.+||
T Consensus 305 ~g~v~~~~kie~r~h~e~l~~~i~~~~~~t~~sq~~~~~r~~e~~g~~~~~al 357 (357)
T KOG1284|consen 305 EGEVYLGTKIEVRGHLECLPDDIFGNRKRTGGSQLNYFMRTIEAAGRGVFVAL 357 (357)
T ss_pred ceEEeechhhhheeehhcccchhcCCcCCCCccHHHHHHHHHHhhcceeEEeC
Confidence 99998888899999999999999999999999999999999999999999996
No 19
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=100.00 E-value=4.9e-60 Score=447.20 Aligned_cols=196 Identities=51% Similarity=0.879 Sum_probs=189.6
Q ss_pred cccccccceecCcCccEEEEEEEecCCCcEEEEEEEccCCCCCceeEEEcccCcccccccCCCCCChHHHHHHHHHHHHc
Q 013465 219 LVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAA 298 (442)
Q Consensus 219 lV~r~~~~~lpT~~G~F~~~~f~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~ 298 (442)
.|+++++.++||.||+|++++|++..++.+|+|||+|++.+++||||||||+|+++|+|++.+|||++||++||++|+++
T Consensus 2 ~v~~~~~~~~~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~vlVRVH~~~~~~Dvl~~~~~dc~~~L~~Al~~I~~~ 81 (197)
T PRK00393 2 QLKRVAEAKLPTPWGDFLMVGFEELATGKEHVALVFGDISGTEPVLVRVHSECLTGDALFSLRCDCGFQLEAALERIAEE 81 (197)
T ss_pred cEEEEEEEecccCCccEEEEEEEECCCCeEEEEEEECCCCCCCCceEEEecccCHHHHhcCCCCCCcchHHHHHHHHHHc
Confidence 37899999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcCccccccc
Q 013465 299 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKG 378 (442)
Q Consensus 299 G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~~irLLTNNP~K~~aL~~ 378 (442)
|+||||||+ |+|||+|+.+|+++|.+|+.|.|++++|..+|++.|.|+||+|||||++|||++||||||||.|+.+|++
T Consensus 82 G~GVlVyL~-~~g~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGiGAQIL~dLGV~~mrLLtn~~~k~~~L~g 160 (197)
T PRK00393 82 GRGILLYLR-QEGRGIGLLNKIRAYALQDQGLDTVEANHQLGFAADERDYTLAADMLKALGVKKVRLLTNNPKKVEALTE 160 (197)
T ss_pred CCEEEEEEc-CCCcchhHHHHHHHHhhhhccCcchhhhhhcCCCccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHh
Confidence 999999998 9999999999999999999888999999889999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeecCCCCChhhHHHHHHHHHhcCCCCCCC
Q 013465 379 YGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLE 415 (442)
Q Consensus 379 ~Gi~V~~rvpl~~~~~~~n~~Yl~tK~~k~gH~l~~~ 415 (442)
|||+|++++|++++.+++|.+||.||++||||.++++
T Consensus 161 ~GleV~~~~~~~~~~~~~~~~y~~~k~~~~~h~l~~~ 197 (197)
T PRK00393 161 AGINIVERVPLIVGRNPHNEHYLKTKAEKMGHLLSLD 197 (197)
T ss_pred CCCEEEEEecccCCCCchhhHHHHHHHHhhcCCCCCC
Confidence 9999999999988899999999999999999999874
No 20
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=100.00 E-value=5.3e-59 Score=438.12 Aligned_cols=191 Identities=52% Similarity=0.886 Sum_probs=185.0
Q ss_pred cccccceecCcCccEEEEEEEecCCCcEEEEEEEccCCCCCceeEEEcccCcccccccCCCCCChHHHHHHHHHHHHcCC
Q 013465 221 DRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGR 300 (442)
Q Consensus 221 ~r~~~~~lpT~~G~F~~~~f~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~ 300 (442)
+++++.++||.||+|++++|++..++.+|+|||+|++.+++||||||||+|.++|+|++.+|||++||++||++|+++|+
T Consensus 1 erv~e~~~~t~~G~f~~~~y~d~~~~~~H~ALvkG~i~~~~~~lVRvH~~~~~~Dvl~~~~~dc~~~L~~al~~i~~~G~ 80 (191)
T TIGR00505 1 ERVAEAKLPTPYGDFYMVGFEEPATGKDHVALVKGDISAHTDVLVRIHSECLTGDALHSLRCDCGFQLEAALKQIAEEGR 80 (191)
T ss_pred CeEEEEecccCceeEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEecccCHHHHhcCCCCCCCchHHHHHHHHHhcCC
Confidence 46789999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcCcccccccCC
Q 013465 301 GVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYG 380 (442)
Q Consensus 301 GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~~irLLTNNP~K~~aL~~~G 380 (442)
||||||+ |+|+|+|+.+|+++|++|+.|.||+++|..+|++.|.|+||+|||||++|||++||||||||.|+.+|++||
T Consensus 81 GVlVyL~-~~~~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGiGAQIL~dLGV~~~rLLtn~~~k~~~L~g~g 159 (191)
T TIGR00505 81 GVLIYLR-QEGRGIGLINKLRAYALQDKGYDTVQANLMLGFPADERDFSLCADILEDLGVKKVRLLTNNPKKIEILKKAG 159 (191)
T ss_pred EEEEEEC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhccCcccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHhCC
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeecCCCCChhhHHHHHHHHHhcCCCC
Q 013465 381 LAVAGRVPLITPIKKENKRYLETKRAKMGHIY 412 (442)
Q Consensus 381 i~V~~rvpl~~~~~~~n~~Yl~tK~~k~gH~l 412 (442)
|+|++++|++...+++|.+||.||++||||.+
T Consensus 160 leVv~~~~~~~~~~~~~~~y~~~k~~~~~h~~ 191 (191)
T TIGR00505 160 INIVERVPLIVGRNENNEGYLDTKAEKMGHLL 191 (191)
T ss_pred CEEEEEeccccCCCcchHHHHHHHHHhhCCCC
Confidence 99999999888889999999999999999975
No 21
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=100.00 E-value=1.4e-58 Score=427.50 Aligned_cols=169 Identities=65% Similarity=1.106 Sum_probs=137.8
Q ss_pred ccccccceecCcCccEEEEEEEecCCCcEEEEEEEccCCCCCceeEEEcccCcccccccCCCCCChHHHHHHHHHHHHcC
Q 013465 220 VDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAG 299 (442)
Q Consensus 220 V~r~~~~~lpT~~G~F~~~~f~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G 299 (442)
|+|+.++++||+||+|++++|++..++.+|+|||+|++++++||||||||+|++||+|+|.+|||+|||++||++|+++|
T Consensus 1 Verv~~~~~~T~~G~f~~~~y~~~~~~~~H~ALv~G~~~~~~~~lVRvHs~~~~~Dvf~~~~~d~~~~L~~Am~~I~~~G 80 (169)
T PF00925_consen 1 VERVAECPLPTRFGEFRLHAYRDTIDGQEHLALVKGDIDPDEPVLVRVHSECLTGDVFGSLRCDCGWQLDKAMRRIAEEG 80 (169)
T ss_dssp -EEEEEEEEEETTEEEEEEEEEETTT--EEEEEEES---SSS-EEEEEEE--HHHHTS--SSSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEecCCCccEEEEEEEeCCCCeEEEEEEEecCCCCCCceEEecccccHhhhcCCCCCCCcHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcCcccccccC
Q 013465 300 RGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGY 379 (442)
Q Consensus 300 ~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~~irLLTNNP~K~~aL~~~ 379 (442)
+||||||+ ||+||+|+.+|+++|.+|+.|.||++||..+|++.|.|+||+|||||++|||++||||||||.|+.+|++|
T Consensus 81 ~GVlVyL~-~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~~d~R~ygigaqIL~dLGV~~~rLLtnnp~k~~~L~g~ 159 (169)
T PF00925_consen 81 RGVLVYLR-QEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFPEDLRDYGIGAQILRDLGVKKMRLLTNNPRKYVALEGF 159 (169)
T ss_dssp SEEEEEE---TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT--S----THHHHHHHHHTT--SEEEE-S-HHHHHHHHHT
T ss_pred CEEEEEEc-CCCcchhHHHHHHHHHhhhcCCcchhhhhcccCccccccHHHHHHHHHHcCCCEEEECCCChhHHHHHhcC
Confidence 99999997 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeec
Q 013465 380 GLAVAGRVPL 389 (442)
Q Consensus 380 Gi~V~~rvpl 389 (442)
||+|++++|+
T Consensus 160 gleV~~~vp~ 169 (169)
T PF00925_consen 160 GLEVVERVPL 169 (169)
T ss_dssp T--EEEEE--
T ss_pred CCEEEEEecC
Confidence 9999999996
No 22
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=100.00 E-value=1.1e-55 Score=416.07 Aligned_cols=193 Identities=59% Similarity=1.021 Sum_probs=185.4
Q ss_pred cccccccceecCcCccEEEEEEEecCCCcEEEEEEEccCCCCCceeEEEcccCcccccccCCCCCChHHHHHHHHHHHHc
Q 013465 219 LVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAA 298 (442)
Q Consensus 219 lV~r~~~~~lpT~~G~F~~~~f~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~ 298 (442)
+|+++++.++||.||+|++++|++..++.+|+|||+|+|.+++|||||||++|.++|+|++.+|||++||++||++|+++
T Consensus 1 ~V~~~~~~~l~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~~lVRVH~~~~~~Dvl~~~~~~~~~~L~~Al~~Ia~~ 80 (193)
T cd00641 1 LVEKVAEAPLPTRFGDFRIVAFEDTDDGKEHVALVKGDPADGEPVLVRVHSECLTGDVFGSLRCDCGPQLEEALEEIAEE 80 (193)
T ss_pred CeEEEEEEEcccCcccEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcCccccccc
Q 013465 299 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKG 378 (442)
Q Consensus 299 G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~~irLLTNNP~K~~aL~~ 378 (442)
|+||||||+ |++++.|+.+|+++|.+|+.+.++.+++..++++.|.|+||+|||||++|||++||||||||.|+.+|+|
T Consensus 81 g~GVlV~l~-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~d~R~yGiGAQIL~dLGv~~mrLLs~~~~k~~~L~g 159 (193)
T cd00641 81 GGGVLLYLR-QEGRGIGLANKLRAYALQDQGLDTVEANEALGFPADARDYGLAAQILRDLGIKSVRLLTNNPDKIDALEG 159 (193)
T ss_pred CCEEEEEEC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhcCCCccccchHHHHHHHHHcCCCeEEECCCCHHHHHHHHh
Confidence 999999998 9999999999999999998888888887788899999999999999999999999999999999999999
Q ss_pred CCeEEEEEeecCCCCChhhHHHHHHHHHhcCCCC
Q 013465 379 YGLAVAGRVPLITPIKKENKRYLETKRAKMGHIY 412 (442)
Q Consensus 379 ~Gi~V~~rvpl~~~~~~~n~~Yl~tK~~k~gH~l 412 (442)
|||+|++++|++.+.+++|.+||.+|++|++|++
T Consensus 160 fglevv~~~~~~~~~~~~~~~y~~~k~~~~~~~~ 193 (193)
T cd00641 160 YGIEVVERVPLEVEPNEENKGYLKTKRDKMGHLL 193 (193)
T ss_pred CCCEEEEEeccCCCCChhhHHHHHhhHHhhccCC
Confidence 9999999999887889999999999999999985
No 23
>PRK07198 hypothetical protein; Validated
Probab=100.00 E-value=5.1e-42 Score=347.77 Aligned_cols=168 Identities=30% Similarity=0.515 Sum_probs=147.9
Q ss_pred EEEEEEecCCCcEEEEEEEccCCC----CCceeEEEcccCcccccccCCCCCChHHH----HHHHHHHHHcCCEEEEEEe
Q 013465 236 TAYCYRSILDGIEHIAMVKGDIGD----GQDILVRVHSECLTGDIFGSARCDCGDQL----ALAMQQIEAAGRGVLVYLR 307 (442)
Q Consensus 236 ~~~~f~~~~~g~eH~ALv~Gdi~~----~~~vlVRVHS~CltgDvfgS~~CdCg~qL----~~Al~~I~~~G~GVlvYLr 307 (442)
++++|+....+.+|+ ++|+++. ..|+||||||+|+|||+|||.+|||++|| ++||++|+++|.||||||+
T Consensus 211 ~~~vf~p~~gg~~~~--i~G~p~~~~d~~~PVLVRVHSeC~tgDVFGSlrCDCg~qL~~aLe~Amk~IaeeG~GVLVYLr 288 (418)
T PRK07198 211 DLEVFLPPIGGQTVY--IFGDVTDLADPETELTCRVHDECNGSDVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYNR 288 (418)
T ss_pred ceEEEcCCCCCeeEE--EECCcccccCCCCCceEEEeccccccccccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 679999999999955 8999853 66899999999999999999999999985 6889999999999999998
Q ss_pred CCCCCCCchHHHhhhhhcccC--CCCchhhh----hhcCCCCCCcChhHHHHHHHHcCCCee-eeccCCcCcccccccCC
Q 013465 308 GHEGRGIGLGHKLRAYNLQDD--GRDTVEAN----EELGLPVDSREYGIGAQMLRDLGVRTM-KLMTNNPSKYVGLKGYG 380 (442)
Q Consensus 308 ~qEgRgiGl~~Kl~ay~lqd~--g~DT~eAn----~~lg~~~D~Rdygi~aqIL~~LGv~~i-rLLTNNP~K~~aL~~~G 380 (442)
||||++||.+|+++|++|+. |.||++|| +.++...|.|+||+|||||++|||++| |||||||.|+.+|++||
T Consensus 289 -QEGRgiGLvnKl~aY~~qk~q~G~DT~da~~~rte~~~G~~D~RdyGlGAQILrdLGV~Km~RLLTNnp~K~~gL~GfG 367 (418)
T PRK07198 289 -KEGRALGEVTKFLVYNARKRQVGGDTAATYFARTECVAGVQDMRFQELMPDVLHWLGIRRIHRLVSMSNMKYDAITGSG 367 (418)
T ss_pred -CCCcchhHHHHHHHHhhhhhccCCchhhhhhcccccccCCCcceehhHHHHHHHHhCCChhhhhcCCCHHHHHHHHhCC
Confidence 99999999999999999853 89999975 333444699999999999999999999 99999999999999999
Q ss_pred eEEEEEeecCCCCChhhHHH-HHHHHH
Q 013465 381 LAVAGRVPLITPIKKENKRY-LETKRA 406 (442)
Q Consensus 381 i~V~~rvpl~~~~~~~n~~Y-l~tK~~ 406 (442)
|+|++++|++...+++..+- +.+|..
T Consensus 368 LEVVErVpl~~~~~p~d~~vei~ak~~ 394 (418)
T PRK07198 368 IEVGERVPIPDELIPADARVEIDAKKA 394 (418)
T ss_pred CEEEEEeccCcCCCccccccchhhhhh
Confidence 99999999988887766443 555554
No 24
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=99.72 E-value=1.3e-18 Score=173.88 Aligned_cols=201 Identities=26% Similarity=0.321 Sum_probs=168.8
Q ss_pred cceecC-cCccEEEEEEEecCCCcEEEEEEEccC----------------------------------------------
Q 013465 225 AARIPT-MWGPFTAYCYRSILDGIEHIAMVKGDI---------------------------------------------- 257 (442)
Q Consensus 225 ~~~lpT-~~G~F~~~~f~~~~~g~eH~ALv~Gdi---------------------------------------------- 257 (442)
+.++|+ ++|.|-++.|....++.+|++++.|+.
T Consensus 67 ~~ri~~~r~gk~~ivldd~~rdneg~L~~a~~~~~~~~~aF~vr~~~g~vd~~m~ga~~~~L~l~~~v~~~~~de~~~~~ 146 (357)
T KOG1284|consen 67 PARIPTFRHGKFVIVLDDEDRDNEGDLIIAAGNVIREDMAFLVRHGSGIVDVMMRGAYLGRLHLPLMVFEKNDDETYETA 146 (357)
T ss_pred hhhhhcccCCcEEEEEecccccCCCCcceecccccchhhhhhhhcCCceechhhhhcccccccccccccccccccccccc
Confidence 344543 468888888888888888888888762
Q ss_pred -------CCCCceeEEEcccCcccccccCCCCCChHHHHHHHHHHH---H-cCCEEEEEEeCCCCCCCchHHHhhhhhcc
Q 013465 258 -------GDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIE---A-AGRGVLVYLRGHEGRGIGLGHKLRAYNLQ 326 (442)
Q Consensus 258 -------~~~~~vlVRVHS~CltgDvfgS~~CdCg~qL~~Al~~I~---~-~G~GVlvYLr~qEgRgiGl~~Kl~ay~lq 326 (442)
+.+..+.||.|++|.|+..++|.+|+|+.|++++=..|. + +| ||+.|++ |+++|++|..++..|+||
T Consensus 147 ~titvd~~~gt~TgVsahde~~T~~~l~s~~~~~pedf~rpghivpl~~~~~G-GVl~r~g-htea~vdL~~l~gl~pl~ 224 (357)
T KOG1284|consen 147 FTITVDRAHGTVTGVSAHDEAYTGETLASARCDCPEDFDRPGHIVPLRYRLDG-GVLERLG-HTEAGVDLCELAGLYPLG 224 (357)
T ss_pred eeEEEehhcCccceeEEecccccchhhcccccCChhhhccccccccceeecCC-CeEEEcc-ccccchhHHHHcCCCchh
Confidence 123467999999999999999999999999999988887 6 47 9999997 999999999999999999
Q ss_pred cCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcCcccccccCC--eEEEEEeecCCCC---------Ch
Q 013465 327 DDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYG--LAVAGRVPLITPI---------KK 395 (442)
Q Consensus 327 d~g~DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~~irLLTNNP~K~~aL~~~G--i~V~~rvpl~~~~---------~~ 395 (442)
+-|.+++++|..+-+++|.|.|+..-.|+-+++..-+|+++|||+|++..+..- ...++|+++.... ..
T Consensus 225 ~l~elv~q~~g~m~~lpd~r~fa~~~~i~~~~i~dliryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i~~~ 304 (357)
T KOG1284|consen 225 VLGELVVQADGSMARLPDCRSFAAEHAIPLISIEDLIRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGIASV 304 (357)
T ss_pred hhhhhhhcCCcccccCccHhhhhHhhcCChhhhhhHHHHHhcChhhhhcccCCCcCceeeeccccceeehhccccccccc
Confidence 999999999999999999999999999999999999999999999999887765 5567888765321 11
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCCcccccccCCCCCccc
Q 013465 396 ENKRYLETKRAKMGHIYGLESNGRLTNLINGNGKPSIK 433 (442)
Q Consensus 396 ~n~~Yl~tK~~k~gH~l~~~~~~~~~~~~~~~~~~~~~ 433 (442)
.-.-|+.+|.++|+|...+ +-.|-||-||.--
T Consensus 305 ~g~v~~~~kie~r~h~e~l------~~~i~~~~~~t~~ 336 (357)
T KOG1284|consen 305 EGEVYLGTKIEVRGHLECL------PDDIFGNRKRTGG 336 (357)
T ss_pred ceEEeechhhhheeehhcc------cchhcCCcCCCCc
Confidence 2256999999999999866 4567777776543
No 25
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=83.26 E-value=3.9 Score=42.44 Aligned_cols=88 Identities=20% Similarity=0.345 Sum_probs=59.7
Q ss_pred EEEEecCCCcEEEEEEEccCCCCCceeE-----EEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 013465 238 YCYRSILDGIEHIAMVKGDIGDGQDILV-----RVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGR 312 (442)
Q Consensus 238 ~~f~~~~~g~eH~ALv~Gdi~~~~~vlV-----RVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GVlvYLr~qEgR 312 (442)
+.|+...+ ...++|+.|-=+.-+|... =+=+.|..||+|-|.. ..|.-+|++.+. .|.|||+..-|-.|
T Consensus 35 vv~~~~~~-~~kV~lIsGGGSGHEPah~GfVG~GmLdaav~G~VFaSPs---~~~Il~ai~av~-~~~GvL~iv~NYtG- 108 (331)
T PRK14481 35 VIVRKDKP-PGKVALVSGGGSGHEPAHAGFVGEGMLDAAVCGAVFTSPT---PDQILEAIKAVD-TGAGVLLIVKNYSG- 108 (331)
T ss_pred EEEecCCC-CCcEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHhcc-CCCCEEEEeCCcHH-
Confidence 34554433 4678999875333333211 1334588899999886 578999999986 45699987764333
Q ss_pred CCchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCe
Q 013465 313 GIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRT 362 (442)
Q Consensus 313 giGl~~Kl~ay~lqd~g~DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~~ 362 (442)
|--+|++|+++++.-|++-
T Consensus 109 -------------------------------D~lnF~lA~E~a~~eGi~v 127 (331)
T PRK14481 109 -------------------------------DVMNFEMAAELAEMEGIEV 127 (331)
T ss_pred -------------------------------HhccHHHHHHHHHhCCCCE
Confidence 6667899999998888853
No 26
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=81.59 E-value=4 Score=45.37 Aligned_cols=88 Identities=19% Similarity=0.402 Sum_probs=59.9
Q ss_pred EEEEecCCCcEEEEEEEccCCCCCceeE-E----EcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 013465 238 YCYRSILDGIEHIAMVKGDIGDGQDILV-R----VHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGR 312 (442)
Q Consensus 238 ~~f~~~~~g~eH~ALv~Gdi~~~~~vlV-R----VHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GVlvYLr~qEgR 312 (442)
+.|+...+ ...++|+.|-=+.-+|-.. . +=+.+..||+|-|.. ..|.-+|++.+...|.|||+..-|-.|
T Consensus 33 vv~~~~~~-~~kV~lisGGGSGHEPah~G~VG~Gml~aav~G~vFaSPs---~~~i~~ai~~~~~~~~Gvl~iv~NYtG- 107 (574)
T TIGR02361 33 VVYRRDLN-KDKVSLISGGGSGHEPAHAGFVGKGMLTAAVAGDVFASPS---TKQILAAIRAVVGSEAGTLLIVKNYTG- 107 (574)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHHhcCCCCcEEEEecccHH-
Confidence 45554443 5689999875333333211 1 234577899999886 679999999998757899988864443
Q ss_pred CCchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 013465 313 GIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVR 361 (442)
Q Consensus 313 giGl~~Kl~ay~lqd~g~DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~ 361 (442)
|--+|++++++++.-|++
T Consensus 108 -------------------------------D~lnF~~A~e~a~~eg~~ 125 (574)
T TIGR02361 108 -------------------------------DRLNFGLAAEKAKAEGYN 125 (574)
T ss_pred -------------------------------HhhhHHHHHHHHHhCCCc
Confidence 555678888888877774
No 27
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=79.75 E-value=6.6 Score=41.16 Aligned_cols=87 Identities=23% Similarity=0.381 Sum_probs=56.4
Q ss_pred EEEecCCCcEEEEEEEccCCCCCceeE-E----EcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCC
Q 013465 239 CYRSILDGIEHIAMVKGDIGDGQDILV-R----VHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRG 313 (442)
Q Consensus 239 ~f~~~~~g~eH~ALv~Gdi~~~~~vlV-R----VHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GVlvYLr~qEgRg 313 (442)
.|+........++|+.|-=+.-+|... . +=+.+..||+|-|.. ..|.-+|++.+. .|.|||+..-|-.|
T Consensus 35 v~~~~~~~~~kValIsGGGSGHEPah~GyVG~GmLdAAv~G~VFaSPs---~~qI~~ai~av~-~~~GvLlivkNYtG-- 108 (356)
T PRK11468 35 VTRADAPVAGKVALLSGGGSGHEPMHCGFVGQGMLDGACPGEIFTSPT---PDQMFECAMQVD-GGEGVLLIIKNYTG-- 108 (356)
T ss_pred EEeCCCCCCCcEEEEecCCccccccccceecCCcccceeeccccCCCC---HHHHHHHHHhhc-CCCCEEEEecccHH--
Confidence 344433324578998875333344211 0 234477899998886 679999999964 56799988865443
Q ss_pred CchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 013465 314 IGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVR 361 (442)
Q Consensus 314 iGl~~Kl~ay~lqd~g~DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~ 361 (442)
|--+|++|+++++.-|++
T Consensus 109 ------------------------------DvlNF~mAaE~a~~eGi~ 126 (356)
T PRK11468 109 ------------------------------DVLNFETATELLHDSGVK 126 (356)
T ss_pred ------------------------------hhccHHHHHHHHHhCCCc
Confidence 555677777777777764
No 28
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=77.25 E-value=8.7 Score=41.74 Aligned_cols=163 Identities=26% Similarity=0.325 Sum_probs=99.2
Q ss_pred ccCChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEc-----CcCCHHHHHHHH----------HcCCceEEEecChhhHh
Q 013465 14 FLLSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAA-----QLATPEAMAFIV----------KHGTGIVCVSMKGEDLE 78 (442)
Q Consensus 14 ~~~~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aA-----e~~t~e~v~fm~----------~~~~Glicval~~~~~~ 78 (442)
...|| ++.|||++|+|||.... -++.-+ --.|+-.+..-+ ....|.+|+-++++...
T Consensus 26 l~isp-qv~eal~~~epVVales-------tiitHgmPyp~nl~tA~~veq~vrs~GaipaTialldg~~kiGLt~e~L~ 97 (614)
T KOG3009|consen 26 LQISP-QVKEALANGEPVVALES-------TIITHGMPYPQNLSTATVVEQKVRSNGAIPATIALLDGIIKIGLTPEELE 97 (614)
T ss_pred eecCH-HHHHHHhcCCCEEEeEe-------eeeecCCcCCcccccccchhhhhhcCCCcchhhhhhcceeeecCCHHHHH
Confidence 33444 68899999999998654 111111 111222222222 23369999999999999
Q ss_pred hcCCccccccccCCCccCCceEEEEecCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChh
Q 013465 79 RLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHT 158 (442)
Q Consensus 79 ~L~Lp~m~~~~~~~~~~~t~ftvsVDa~~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~Ght 158 (442)
.|++..-... ..+...-+|++++-.. |-||+- .|+-. | ......=|+.||- |||.+-+-|+
T Consensus 98 ~La~~g~~~~--kvsrRD~~~v~i~rlv-ggTtva------aTm~i-A-~~~gI~vfaTggi--------ggvhr~An~s 158 (614)
T KOG3009|consen 98 TLASSGPSAV--KVSRRDIASVVIVRLV-GGTTVA------ATMII-A-HAAGIVVFATGGI--------GGVHRGANQS 158 (614)
T ss_pred HHhhcCcccc--ccccccccccceeeec-CCcchh------hhhhh-c-ccceEEEEecCCc--------chhhhccccc
Confidence 9988543211 1233445788888764 445532 22221 1 1111233677772 6664444433
Q ss_pred -HHHHHHHHHcCCCccEEEEEEeCCCCCcCChhHHHHHHHhcCCceEehH
Q 013465 159 -EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIA 207 (442)
Q Consensus 159 -EaavdLarlAGl~Paavi~ell~~dG~~a~~~~l~~fA~~h~L~~v~i~ 207 (442)
.++-||-.| |-.|.+|+|+=|. +..+.+...+|-+.++.++++..
T Consensus 159 mdisadl~el-grtpvavv~agvk---siLdip~tle~letq~V~vvtlg 204 (614)
T KOG3009|consen 159 MDISADLTEL-GRTPVAVVSAGVK---SILDIPKTLEYLETQGVVVVTLG 204 (614)
T ss_pred cchhhhhhhh-cCCcceEEecchh---hhccchhhhhhhccccEEEEEeC
Confidence 356777777 8899999998543 47777888888888888888764
No 29
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=77.19 E-value=7.2 Score=40.50 Aligned_cols=88 Identities=22% Similarity=0.383 Sum_probs=59.4
Q ss_pred EEEEecCCCcEEEEEEEccCCCCCceeE-----EEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 013465 238 YCYRSILDGIEHIAMVKGDIGDGQDILV-----RVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGR 312 (442)
Q Consensus 238 ~~f~~~~~g~eH~ALv~Gdi~~~~~vlV-----RVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GVlvYLr~qEgR 312 (442)
+.|+...+....++|+.|-=+.-+|... =+=+.|..||+|-|.. ..|.-+|++.+.. |.|||+..-|-.|
T Consensus 35 vv~~~~~~~~~kV~lIsGGGSGHEPah~GfVG~GmLdAav~G~VFaSPs---~~~I~~ai~av~~-~~GvL~iv~NYtG- 109 (329)
T TIGR02363 35 VIVRKDKKVNGKVALVSGGGSGHEPAHAGFVGYGMLDAAVPGEVFTSPT---PDQILEAIKAVDQ-GAGVLLIVKNYTG- 109 (329)
T ss_pred EEEeCCCCCCCCEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHhccC-CCCEEEEeCCcHH-
Confidence 3455444334678999875333344211 0234578899999886 6789999988764 5799987764333
Q ss_pred CCchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 013465 313 GIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVR 361 (442)
Q Consensus 313 giGl~~Kl~ay~lqd~g~DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~ 361 (442)
|--+|++|++.++.-|++
T Consensus 110 -------------------------------D~lnF~mA~E~a~~eGi~ 127 (329)
T TIGR02363 110 -------------------------------DVMNFEMAAELAEDEGIK 127 (329)
T ss_pred -------------------------------HhccHHHHHHHHHHcCCc
Confidence 666788888888888885
No 30
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=73.65 E-value=8.6 Score=42.71 Aligned_cols=87 Identities=23% Similarity=0.412 Sum_probs=58.0
Q ss_pred EEEEecCCCcEEEEEEEccCCCCCceeE-----EEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 013465 238 YCYRSILDGIEHIAMVKGDIGDGQDILV-----RVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGR 312 (442)
Q Consensus 238 ~~f~~~~~g~eH~ALv~Gdi~~~~~vlV-----RVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GVlvYLr~qEgR 312 (442)
+.|+...+ ...++|+.|-=+.-+|... =+=+.|..||+|-|.. ..|.-+|++.+. .|.|||+..-|-.|
T Consensus 34 vi~~~~~~-~~kV~lisGGGSGHEP~h~G~VG~Gml~aav~G~vFaSPs---~~~i~~ai~~v~-~~~Gvl~iv~NYtG- 107 (568)
T PRK14479 34 VVRRTPTP-EGKVAVVSGGGSGHEPAFAGYVGPGMLDAAVCGNVFTSPS---ADQVYAAIRAAD-GGAGVLLIVGNYAG- 107 (568)
T ss_pred EEEecCCC-CCceEEEecCCccccccccccccCCccceeeccCccCCCC---HHHHHHHHHhcc-CCCCEEEEeCCcHH-
Confidence 34544333 4678999875333344211 0234577899998886 578999998886 55699988764433
Q ss_pred CCchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 013465 313 GIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVR 361 (442)
Q Consensus 313 giGl~~Kl~ay~lqd~g~DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~ 361 (442)
|--+|++++++++.-|++
T Consensus 108 -------------------------------D~lnF~~A~e~a~~~g~~ 125 (568)
T PRK14479 108 -------------------------------DVMNFGLAAELARAEGID 125 (568)
T ss_pred -------------------------------HHhhHHHHHHHHHhcCCc
Confidence 556688888888888874
No 31
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=73.48 E-value=9.4 Score=39.63 Aligned_cols=87 Identities=24% Similarity=0.403 Sum_probs=58.3
Q ss_pred EEEEecCCCcEEEEEEEccCCCCCceeE-----EEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 013465 238 YCYRSILDGIEHIAMVKGDIGDGQDILV-----RVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGR 312 (442)
Q Consensus 238 ~~f~~~~~g~eH~ALv~Gdi~~~~~vlV-----RVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GVlvYLr~qEgR 312 (442)
+.|+...+ ...++|+.|-=+.-+|... =+=+.|..||+|-|.. ..|.-+|++.+. .|.|||+..-|-.|
T Consensus 32 vv~~~~~~-~~kValIsGGGSGHEPah~GfVG~GmLdAav~G~VFaSPs---~~~I~~ai~av~-~~~GvL~ivkNYtG- 105 (326)
T TIGR02362 32 GIYDSNFD-DQQIPIISGGGSGHEPAHWGYVGEGMLSAAIMGDVFVPPT---AQDILEAIRQVD-RGKGVFVIIKNFEA- 105 (326)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeEeccccCCCC---HHHHHHHHHhhc-CCCCEEEEeccCHH-
Confidence 34444333 5679999875333343211 1234577899999886 578999999976 45799987764433
Q ss_pred CCchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 013465 313 GIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVR 361 (442)
Q Consensus 313 giGl~~Kl~ay~lqd~g~DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~ 361 (442)
|--+|++|++.++.-|++
T Consensus 106 -------------------------------D~lNF~mA~E~a~~eGi~ 123 (326)
T TIGR02362 106 -------------------------------DLSEFSQAIQQARQEGRQ 123 (326)
T ss_pred -------------------------------HHhhHHHHHHHHHHcCCc
Confidence 556688888888888875
No 32
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=71.28 E-value=12 Score=38.87 Aligned_cols=87 Identities=21% Similarity=0.409 Sum_probs=57.3
Q ss_pred EEEEecCCCcEEEEEEEccCCCCCceeE-----EEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 013465 238 YCYRSILDGIEHIAMVKGDIGDGQDILV-----RVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGR 312 (442)
Q Consensus 238 ~~f~~~~~g~eH~ALv~Gdi~~~~~vlV-----RVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GVlvYLr~qEgR 312 (442)
+.|+.... ...++|+.|-=+.-+|... =+=+.|..||+|-|.. ..|.-+|++.+. .|.|||+...|-.|
T Consensus 34 vv~~~~~~-~~kV~lIsGGGSGHEPah~GyVG~GmLdAav~G~VFaSPs---~~qI~~ai~av~-~~~GvL~ivkNYtG- 107 (329)
T PRK14483 34 YVYDIEKD-DQLVPIISGGGSGHEPAHIGYVGKGMLTAAVNGSIFTPPT---AEQILAATRLVP-KGKGVFFIIKNFEA- 107 (329)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeEeccccCCCC---HHHHHHHHHhhc-CCCCEEEEecccHH-
Confidence 34554333 5679999875333343211 0234578899998886 679999998875 45699988764443
Q ss_pred CCchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 013465 313 GIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVR 361 (442)
Q Consensus 313 giGl~~Kl~ay~lqd~g~DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~ 361 (442)
|--+|++|+++++.-|++
T Consensus 108 -------------------------------DvlnF~mA~E~a~~eGi~ 125 (329)
T PRK14483 108 -------------------------------DVAEFSAAIQIARQEGRQ 125 (329)
T ss_pred -------------------------------HhhhHHHHHHHHHhCCCc
Confidence 555677888887777774
No 33
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=66.72 E-value=15 Score=41.06 Aligned_cols=87 Identities=17% Similarity=0.331 Sum_probs=56.8
Q ss_pred EEEEecCCCcEEEEEEEccCCCCCceeE-E----EcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 013465 238 YCYRSILDGIEHIAMVKGDIGDGQDILV-R----VHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGR 312 (442)
Q Consensus 238 ~~f~~~~~g~eH~ALv~Gdi~~~~~vlV-R----VHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GVlvYLr~qEgR 312 (442)
+.|+...+ ...++||.|-=+.-+|... . +=+.+..||+|-|.. ..|.-+|++.+. .|.|||+..-|-.|
T Consensus 37 vv~~~~~~-~~kV~lisGGGSGHEPah~G~VG~Gml~aav~G~vFaSPs---~~qi~~ai~~v~-~~~Gvl~ivkNYtG- 110 (584)
T PTZ00375 37 VVVRSDID-KTKVLLISGGGSGHEPAHAGFVGKGWLTAAVCGSVFASPS---TKHVLAAIEYVP-NGPGCLLIVKNYTG- 110 (584)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeecccccCCCC---HHHHHHHHHHhc-CCCCEEEEecccHH-
Confidence 44554333 4678999875333344211 0 224477799999886 679999999775 55699988865443
Q ss_pred CCchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 013465 313 GIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVR 361 (442)
Q Consensus 313 giGl~~Kl~ay~lqd~g~DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~ 361 (442)
|--+|+++++.++.-|++
T Consensus 111 -------------------------------D~lnF~lA~e~a~~eGi~ 128 (584)
T PTZ00375 111 -------------------------------DILNFELAVEQARARGIQ 128 (584)
T ss_pred -------------------------------HHhhHHHHHHHHHhCCCc
Confidence 455677777777777764
No 34
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=66.26 E-value=4.2 Score=42.12 Aligned_cols=86 Identities=26% Similarity=0.541 Sum_probs=51.3
Q ss_pred EEEecCCCcEEEEEEEccCCCCCce---eE--EEcccCcccccccCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCC
Q 013465 239 CYRSILDGIEHIAMVKGDIGDGQDI---LV--RVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRG 313 (442)
Q Consensus 239 ~f~~~~~g~eH~ALv~Gdi~~~~~v---lV--RVHS~CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GVlvYLr~qEgRg 313 (442)
.|+... ....++|+.|-=+.-+|. .| =+=+.|..||+|-|.. ..|.-+|++.+ ..+.|||+.+-|-.|
T Consensus 20 v~~~~~-~~~kV~lIsGGGSGHEP~~~GfVG~GmLdAav~G~VFaSPs---~~qI~~ai~~~-~~~~Gvl~iv~NYtG-- 92 (325)
T PF02733_consen 20 VYRKDI-PKDKVALISGGGSGHEPAHAGFVGKGMLDAAVCGDVFASPS---ADQILAAIKAV-DSGKGVLLIVKNYTG-- 92 (325)
T ss_dssp EEETT---TTS-EEEEEEEESSTTTTGGGBSCTSBSEEEEEEETS------HHHHHHHHHHH--SSS-EEEEEESSHH--
T ss_pred EEeCCC-CCCCEEEEecCCCCcccchhhhccCCccceEeeCCCcCCCC---HHHHHHHHHhc-cCCCCEEEEEecchH--
Confidence 444333 556788888642222331 11 1234577899999886 67999999998 567799988864433
Q ss_pred CchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 013465 314 IGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVR 361 (442)
Q Consensus 314 iGl~~Kl~ay~lqd~g~DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~ 361 (442)
|--+|++|+++++.-|++
T Consensus 93 ------------------------------D~lNF~~A~E~a~~~Gi~ 110 (325)
T PF02733_consen 93 ------------------------------DVLNFGMAAEKARAEGIK 110 (325)
T ss_dssp ------------------------------HHHHHHHHHHHHHHTT--
T ss_pred ------------------------------HHhhHHHHHHHHHhCCCC
Confidence 445699999999998884
No 35
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=58.78 E-value=37 Score=34.90 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=68.2
Q ss_pred hhhHHHHHHhhcc--------CChhHHHHHHHcCCeEEEEeCCC-CCCceeE--EEEcCcCCHHHHHHHHHcCCceEEEe
Q 013465 3 MNLIWIALQKVFL--------LSPRPLKTFAKERLFVVVVDDED-RENEGDL--IMAAQLATPEAMAFIVKHGTGIVCVS 71 (442)
Q Consensus 3 ~~~~~~~~~~~~~--------~~~~~~~~alr~G~~Viv~Dd~~-re~EgdL--v~aAe~~t~e~v~fm~~~~~Glicva 71 (442)
+|-+|...|..|. ...+.++++|++|+.|-+.-|+| ..+++.+ .|+-+..|+--++.|++.++--|-
T Consensus 161 ld~~i~~~R~r~~~~~~~~~~~~ir~li~~Lk~G~~v~~lpDqd~~~~~~vfvpFFg~~a~T~t~~~~LA~~~~a~vi-- 238 (308)
T COG1560 161 LDWLITRGRERFGGRLLPRKGEGIRQLIKALKQGEAVGYLPDQDYGPGESVFVPFFGVPAATTTGPAKLARLTGAAVV-- 238 (308)
T ss_pred HHHHHHHHHHhcCCcccCCCchhHHHHHHHHhcCCeEEEecCcccCCCCCeEeccCCCcccccchHHHHHHHhCCCEE--
Confidence 4667777777765 44578899999999996665555 4444523 577888999999999988663332
Q ss_pred cChhhHhhcCCccccccccCCCccCCceEEEEecCCCCCCCCChhhHHHHHHHHhc
Q 013465 72 MKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLAS 127 (442)
Q Consensus 72 l~~~~~~~L~Lp~m~~~~~~~~~~~t~ftvsVDa~~g~~TGISa~DRA~Tir~LAd 127 (442)
|..... |. .+..|++.|.+ -.|+--..|=+.+.+++++
T Consensus 239 -----------p~~~~r--~~--~g~~y~l~i~p---~~~~~~~~D~~~~a~~mn~ 276 (308)
T COG1560 239 -----------PVFPVR--NP--DGSGYTLHIHP---PMTDDPSEDVEADAQRMND 276 (308)
T ss_pred -----------EEEEEE--eC--CCCeEEEEEec---cccCCCCCCHHHHHHHHHH
Confidence 222221 22 35679999987 2344444555566666654
No 36
>KOG2426 consensus Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]
Probab=54.99 E-value=70 Score=35.17 Aligned_cols=93 Identities=23% Similarity=0.426 Sum_probs=66.8
Q ss_pred CccEEEEEEEecCCCcEEEEEEEccCCCCCceeEEEccc---------CcccccccCCCCCChHHHHHHHHHHHHcCCEE
Q 013465 232 WGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSE---------CLTGDIFGSARCDCGDQLALAMQQIEAAGRGV 302 (442)
Q Consensus 232 ~G~F~~~~f~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~---------CltgDvfgS~~CdCg~qL~~Al~~I~~~G~GV 302 (442)
+-.-+++.|++...-..|++|+.|-=+.-+|. |+. -.-||+|-|.. -.|...|++.+.. ..|.
T Consensus 31 ~~~~r~vl~~~~~~~~~kValiSGGGSGHEPt----HAGfVGkGmLtaai~G~iFASPs---tkqI~aairaV~~-~~Gt 102 (582)
T KOG2426|consen 31 HPEDRVVLFRDASAPKPKVALISGGGSGHEPT----HAGFVGKGMLTAAIAGDIFASPS---TKQILAAIRAVEG-EAGT 102 (582)
T ss_pred cccceEEEEeecCCCCCceEEEeCCCCCCCcc----cccccccchhhhhhhcccccCCc---HHHHHHHHHHhcc-CCce
Confidence 34457788988766668999999865444553 443 45689998875 4699999999944 4599
Q ss_pred EEEEeCCCCCCCchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeee
Q 013465 303 LVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKL 365 (442)
Q Consensus 303 lvYLr~qEgRgiGl~~Kl~ay~lqd~g~DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~~irL 365 (442)
||+..|=.| |-=+||+++.=-|..|++ ++|
T Consensus 103 LlIVKNYTG--------------------------------D~LhFGLAaErara~G~~-ve~ 132 (582)
T KOG2426|consen 103 LLIVKNYTG--------------------------------DRLHFGLAAERARAAGIK-VEL 132 (582)
T ss_pred EEEEecccc--------------------------------ceeehhhhHHHHHhcCCc-eEE
Confidence 988874433 344588999888898884 444
No 37
>PLN02398 hydroxyacylglutathione hydrolase
Probab=44.33 E-value=3.6e+02 Score=28.02 Aligned_cols=139 Identities=17% Similarity=0.111 Sum_probs=75.7
Q ss_pred ccCChhHHHHHHHHHcCCCccEEEEEEeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHHhhccccccccccceecCcC
Q 013465 153 KRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMW 232 (442)
Q Consensus 153 ~R~GhtEaavdLarlAGl~Paavi~ell~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~e~lV~r~~~~~lpT~~ 232 (442)
.-+|..+.-++..+-.|+...++++.=--.| -.--+.+|.++++.+++.-..-..+....+..+ .... ....
T Consensus 103 VDP~~a~~vl~~l~~~g~~L~~ILlTH~H~D----H~GG~~~L~~~~ga~V~g~~~~~~~i~~~d~~v---~dGd-~i~l 174 (329)
T PLN02398 103 VDPSEAVPVIDALSRKNRNLTYILNTHHHYD----HTGGNLELKARYGAKVIGSAVDKDRIPGIDIVL---KDGD-KWMF 174 (329)
T ss_pred EcCCCHHHHHHHHHhcCCCceEEEECCCCch----hhCCHHHHHHhcCCEEEEehHHhhhccCCcEEe---CCCC-EEEE
Confidence 3355566666666667888777776432222 122244677788888876543222110001111 1111 1113
Q ss_pred ccEEEEEEEecCCCcEEEEEEEccCCCCCceeEEEcccCcccccccCCCCC---C--hHHHHHHHHHHHHcCCEEEEEEe
Q 013465 233 GPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCD---C--GDQLALAMQQIEAAGRGVLVYLR 307 (442)
Q Consensus 233 G~F~~~~f~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~CltgDvfgS~~Cd---C--g~qL~~Al~~I~~~G~GVlvYLr 307 (442)
|.+++.++...-....|+++...+ . ...++||.+.+..|. . ..|+.++++.|.+-..-.+||-
T Consensus 175 gg~~l~vi~tPGHT~GhI~~~~~~----~-------~vLFtGDtLf~~g~Gr~feg~~~~~~~SL~rL~~L~~~t~Vyp- 242 (329)
T PLN02398 175 AGHEVLVMETPGHTRGHISFYFPG----S-------GAIFTGDTLFSLSCGKLFEGTPEQMLSSLQKIISLPDDTNIYC- 242 (329)
T ss_pred CCeEEEEEeCCCcCCCCEEEEECC----C-------CEEEECCCcCCCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEEC-
Confidence 444555554333345677776521 1 125689988776664 2 3588899999987665677774
Q ss_pred CCCC
Q 013465 308 GHEG 311 (442)
Q Consensus 308 ~qEg 311 (442)
+||.
T Consensus 243 GHgy 246 (329)
T PLN02398 243 GHEY 246 (329)
T ss_pred CCCC
Confidence 4664
No 38
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.12 E-value=26 Score=34.52 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=59.0
Q ss_pred hHHHHHHHHcCCCeeeeccCCc-----CcccccccCCeEEEEEeecCCCCC------hhhHHHHHHHHHhcCCCCCCCCC
Q 013465 349 GIGAQMLRDLGVRTMKLMTNNP-----SKYVGLKGYGLAVAGRVPLITPIK------KENKRYLETKRAKMGHIYGLESN 417 (442)
Q Consensus 349 gi~aqIL~~LGv~~irLLTNNP-----~K~~aL~~~Gi~V~~rvpl~~~~~------~~n~~Yl~tK~~k~gH~l~~~~~ 417 (442)
+...+-|+.||+++|-++|-.- .-+..|++.|++|+...-+...-| +-..-|=-+|+-.-+-.=.....
T Consensus 107 ~Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiFiS 186 (238)
T COG3473 107 TAVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAIFIS 186 (238)
T ss_pred HHHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCCeEEEE
Confidence 4556679999999999999532 235678999999999988765444 34467777887764433222222
Q ss_pred Cc-------ccccccCCCCCcccccCCC
Q 013465 418 GR-------LTNLINGNGKPSIKSSSDT 438 (442)
Q Consensus 418 ~~-------~~~~~~~~~~~~~~~~~~~ 438 (442)
|+ +..|-..-|+|-+.|++-|
T Consensus 187 CTnlRt~eii~~lE~~~G~PVvsSN~AT 214 (238)
T COG3473 187 CTNLRTFEIIEKLERDTGVPVVSSNQAT 214 (238)
T ss_pred eeccccHHHHHHHHHHhCCceeeccHHH
Confidence 22 1222345688888777654
No 39
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=40.30 E-value=21 Score=30.97 Aligned_cols=36 Identities=17% Similarity=0.355 Sum_probs=29.0
Q ss_pred HHH-HHcCCCeee--eccCCcCcccccccCCeEEEEEee
Q 013465 353 QML-RDLGVRTMK--LMTNNPSKYVGLKGYGLAVAGRVP 388 (442)
Q Consensus 353 qIL-~~LGv~~ir--LLTNNP~K~~aL~~~Gi~V~~rvp 388 (442)
+++ +.+|+++|. +..+|+.-++..+.+|.+++++.+
T Consensus 103 ~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~ 141 (155)
T PF13420_consen 103 EYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELK 141 (155)
T ss_dssp HHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEE
T ss_pred HHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEe
Confidence 445 789999987 588899889999999999998876
No 40
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=39.79 E-value=20 Score=27.21 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=13.2
Q ss_pred hHHHHHHHhcCCceEehHH
Q 013465 190 PKLREFAKRENLKIISIAD 208 (442)
Q Consensus 190 ~~l~~fA~~h~L~~v~i~d 208 (442)
..+.+||+++++|++..+|
T Consensus 5 ~~A~~~A~~~~lp~~~gSD 23 (56)
T PF13263_consen 5 RRAAELAEKYGLPFTGGSD 23 (56)
T ss_dssp -HHHHHHHHTT--EEEE--
T ss_pred HHHHHHHHHcCCCeEeEEc
Confidence 4689999999999999999
No 41
>PRK08296 hypothetical protein; Provisional
Probab=38.69 E-value=33 Score=38.51 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=47.6
Q ss_pred ceeEEEEcCcCCHHHHHHHHHcCCceEEEecC-----hhhHhhcCCccccccccCCCccCCceEEEEecCCCCC
Q 013465 42 EGDLIMAAQLATPEAMAFIVKHGTGIVCVSMK-----GEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTT 110 (442)
Q Consensus 42 EgdLv~aAe~~t~e~v~fm~~~~~Glicval~-----~~~~~~L~Lp~m~~~~~~~~~~~t~ftvsVDa~~g~~ 110 (442)
+|+ |+-+...+|+.+..+ ....|+|+-.=. .-.|+.+|+|.++.....+....+...|+||..+|+.
T Consensus 528 ~g~-ILV~~~tdP~~~~~~-~~~~GiVte~Gg~~SHaAIvARe~GIPaVvgv~~at~~l~dG~~V~vDg~~G~V 599 (603)
T PRK08296 528 EGE-ILVCPVTSPSWAPIF-AKIKATVTDIGGVMSHAAIVCREYGLPAVVGTGNATKRIKTGQRLRVDGTKGVV 599 (603)
T ss_pred Cce-EEEeCCCCHHHHHHH-HHheEEEEecCCCcchHHHHHHHcCCCEEEcCccHhhhcCCCCEEEEECCCCEE
Confidence 444 555677888888877 668898876522 4479999999988753223445678999999876653
No 42
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=37.49 E-value=23 Score=36.30 Aligned_cols=39 Identities=23% Similarity=0.442 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCeeeeccCCcCcccccccCCeEEEEEee
Q 013465 350 IGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVP 388 (442)
Q Consensus 350 i~aqIL~~LGv~~irLLTNNP~K~~aL~~~Gi~V~~rvp 388 (442)
-..+.|+..||++|||..-+|.=+.++++-||+|.--||
T Consensus 17 ~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vp 55 (310)
T PF00332_consen 17 KVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVP 55 (310)
T ss_dssp HHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-
T ss_pred HHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccC
Confidence 467789999999999999999999999999999999888
No 43
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=35.78 E-value=87 Score=31.43 Aligned_cols=106 Identities=24% Similarity=0.281 Sum_probs=61.2
Q ss_pred CCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCccCCceEEEEecCCCCCCCCChhhHH
Q 013465 40 ENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRA 119 (442)
Q Consensus 40 e~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~~~t~ftvsVDa~~g~~TGISa~DRA 119 (442)
||++|.=|.-. +.|+.++.|.+-. .+..+.+++|.=+....| |.
T Consensus 49 eN~~D~Py~~~-~~~etvaaM~~i~---------~~v~~~~~~p~GVnvL~n------------d~-------------- 92 (254)
T PF03437_consen 49 ENMGDVPYPKR-VGPETVAAMARIA---------REVRREVSVPVGVNVLRN------------DP-------------- 92 (254)
T ss_pred ecCCCCCccCC-CCHHHHHHHHHHH---------HHHHHhCCCCEEeeeecC------------CC--------------
Confidence 68899988777 9999999998753 233444555543332211 11
Q ss_pred HHHHHHhcCCCCCCCCCC-CCcccceeeccCCccccCChhHHHHHHHHHcCCCccEEEEEEeCCCCCcC
Q 013465 120 TTVLTLASRDSKPGDFNR-PGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMA 187 (442)
Q Consensus 120 ~Tir~LAd~~s~~~df~~-PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~Paavi~ell~~dG~~a 187 (442)
..+|+=..+.-.||+| ..+++-..+.. |+.+ +.....+.+-+..|.. +.+++.+....+..+
T Consensus 93 --~aalaiA~A~ga~FIRv~~~~g~~~~d~-G~~~--~~a~e~~r~R~~l~a~-v~ilaDV~~kh~~~l 155 (254)
T PF03437_consen 93 --KAALAIAAATGADFIRVNVFVGAYVTDE-GIIE--GCAGELLRYRKRLGAD-VKILADVHVKHSSPL 155 (254)
T ss_pred --HHHHHHHHHhCCCEEEecCEEceecccC-cccc--ccHHHHHHHHHHcCCC-eEEEeeechhhcccC
Confidence 1122222233468999 88777655444 5443 2333344444555766 888888766544433
No 44
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=34.31 E-value=26 Score=28.44 Aligned_cols=66 Identities=23% Similarity=0.262 Sum_probs=42.6
Q ss_pred ceeEEEEcCcCCHHHHHHHHHcCCceEEEecC-----hhhHhhcCCccccccccCCCccCCceEEEEecCC
Q 013465 42 EGDLIMAAQLATPEAMAFIVKHGTGIVCVSMK-----GEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKH 107 (442)
Q Consensus 42 EgdLv~aAe~~t~e~v~fm~~~~~Glicval~-----~~~~~~L~Lp~m~~~~~~~~~~~t~ftvsVDa~~ 107 (442)
+.+.|+-++..+|+.+.+......|+|+-.=. .=.|+.||+|..+............-.|.||...
T Consensus 9 ~~~~IlV~~~~~p~~~~~~~~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~~~~~~i~~g~~v~lDg~~ 79 (80)
T PF00391_consen 9 PEGVILVAEELTPSDLALDLQRVAGIVTEEGGPTSHAAILARELGIPAIVGVGDATEAIKDGDWVTLDGNS 79 (80)
T ss_dssp TSTEEEEESS--TTCHHSHHTTSSEEEESSSSTTSHHHHHHHHTT-EEEESTTTHHHHSCTTEEEEEETTT
T ss_pred CCCEEEEECCCCHHHHhcchhheEEEEEEcCCccchHHHHHHHcCCCEEEeeccHhhccCCCCEEEEECCC
Confidence 45667777888888888556667898876522 4578999999988652222334456778888643
No 45
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=31.79 E-value=1.3e+02 Score=29.61 Aligned_cols=93 Identities=19% Similarity=0.129 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHH-cCCEEEEEEeCCCCCCCchHHHhhhhhcc-cCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCee
Q 013465 286 DQLALAMQQIEA-AGRGVLVYLRGHEGRGIGLGHKLRAYNLQ-DDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTM 363 (442)
Q Consensus 286 ~qL~~Al~~I~~-~G~GVlvYLr~qEgRgiGl~~Kl~ay~lq-d~g~DT~eAn~~lg~~~D~Rdygi~aqIL~~LGv~~i 363 (442)
.+|..|.+.+.. .+--+|+|=.....=.+|- .++..-.-+ ..|...... -.....-|++||+++|
T Consensus 57 ~~l~~aa~~ll~~a~~dvi~~~cTsgs~~~G~-~~~~~~i~~~~~g~p~tt~------------~~A~~~AL~alg~~RI 123 (239)
T TIGR02990 57 PRLTEAAALILPDEELDVVAYSCTSASVVIGD-DEVTRAINAAKPGTPVVTP------------SSAAVDGLAALGVRRI 123 (239)
T ss_pred hhHHHHHHHhcCCCCCCEEEEccchhheecCH-HHHHHHHHhcCCCCCeeCH------------HHHHHHHHHHcCCCEE
Confidence 345555555533 6888999976333333442 222211111 112322111 2234556999999999
Q ss_pred eeccCCcCc-----ccccccCCeEEEEEeecCC
Q 013465 364 KLMTNNPSK-----YVGLKGYGLAVAGRVPLIT 391 (442)
Q Consensus 364 rLLTNNP~K-----~~aL~~~Gi~V~~rvpl~~ 391 (442)
-|+|-.+.- ...|+..|++|+....+..
T Consensus 124 alvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~ 156 (239)
T TIGR02990 124 SLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGL 156 (239)
T ss_pred EEECCCcHHHHHHHHHHHHhCCcEEeeeeccCC
Confidence 999977654 3458899999998776554
No 46
>PF08584 Ribonuc_P_40: Ribonuclease P 40kDa (Rpp40) subunit; InterPro: IPR013893 The tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule and at least eight protein subunits. Subunits hpop1, Rpp21, Rpp29, Rpp30, Rpp38, and Rpp40 (this entry) are involved in extensive, but weak, protein-protein interactions in the holoenzyme complex [].
Probab=30.79 E-value=2.7e+02 Score=27.97 Aligned_cols=90 Identities=20% Similarity=0.317 Sum_probs=60.5
Q ss_pred CChhHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCcCCHHHHHHHHHcCCceEEEecChhhHhhcCCccccccccCCCcc
Q 013465 16 LSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKL 95 (442)
Q Consensus 16 ~~~~~~~~alr~G~~Viv~Dd~~re~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~~~~~~~~ 95 (442)
.+++=+.+.+++|...++. +.|-...+ +++-. ..|.+.+.+.++.-+++||+--+... ....
T Consensus 5 l~~~F~~~~vk~g~~~~ls--~~~~~~d~-~~~~~-------------~~G~L~l~l~k~tye~~Gl~G~~~~~--~~~~ 66 (284)
T PF08584_consen 5 LEPDFINSYVKKGSVYALS--NTRIDSDN-VFALT-------------PSGILTLSLDKETYERLGLEGKPSRF--GGRK 66 (284)
T ss_pred hhHHHHHHhEEcCeEEEEe--CCCCCCCC-EEEEe-------------cCCeEEEEECHHHHHHcCCCCcccCC--CCcc
Confidence 4556677888999988887 33433222 33321 25999999999999999997544321 1122
Q ss_pred CCceEEEEecCC-CCCCCCChhhHHHHHH
Q 013465 96 CTAFTVTVDAKH-GTTTGVSARDRATTVL 123 (442)
Q Consensus 96 ~t~ftvsVDa~~-g~~TGISa~DRA~Tir 123 (442)
+..|.|+||.+. .-..|---+||..+.-
T Consensus 67 ~~r~vV~idL~~~s~~~g~k~y~Rl~~al 95 (284)
T PF08584_consen 67 HQRYVVEIDLRDPSFLPGKKGYERLRWAL 95 (284)
T ss_pred ceEEEEEEeCCCcccCCCcchhHHHHHHH
Confidence 348999999973 3356777788877743
No 47
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=30.59 E-value=2.2e+02 Score=31.64 Aligned_cols=115 Identities=21% Similarity=0.254 Sum_probs=71.4
Q ss_pred eEEEEcCcCCHHHHHHHHHcCCceEEEec--C---hhhHhhcCCccccccccCCCccCCceEEEEecCCCC-CCCCC---
Q 013465 44 DLIMAAQLATPEAMAFIVKHGTGIVCVSM--K---GEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGT-TTGVS--- 114 (442)
Q Consensus 44 dLv~aAe~~t~e~v~fm~~~~~Glicval--~---~~~~~~L~Lp~m~~~~~~~~~~~t~ftvsVDa~~g~-~TGIS--- 114 (442)
..|+-++..+|+.+..|. ...|+|+--= + .-.|+.||+|..+............-.|+||...|. .-|.-
T Consensus 381 g~ILV~~~t~P~~~~~~~-~a~GIVte~Gg~tSHaAivARelgiP~VvG~~~~~~~~~~G~~VtvDg~~G~V~~G~~~~~ 459 (530)
T PRK05878 381 PVILVRDHTRPDDVHGML-AAQGIVTEVGGATSHAAVVSRELGRVAVVGCGAGVAAALAGKEITVDGYEGEVRQGVLALS 459 (530)
T ss_pred CEEEEECCCCHHHHhhhH-hheEEEEccCCccchHHHHHHHcCCCEEEcccchhhccCCCCEEEEECCCCEEEeCcccCc
Confidence 356677888999999984 5788887641 1 347999999999875322333456889999975443 23321
Q ss_pred -----hhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCcccc-CChhHHHHHHHHHcCCC
Q 013465 115 -----ARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKR-AGHTEASVDLAVLAGFD 171 (442)
Q Consensus 115 -----a~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R-~GhtEaavdLarlAGl~ 171 (442)
.....++++.+|+. +-||..+.+.-..+ ..-.+++|+.+-.||..
T Consensus 460 ~~~~~~~~~~~~l~~~ad~------------i~~L~l~~n~d~~~~~~~~~~~~~~~~~~~~~ 510 (530)
T PRK05878 460 AWSESDTPELRELADIAQR------------ISPLRAHASGDYPRLDDDSDDAVRAALAAGHA 510 (530)
T ss_pred CccccCCHHHHHHHHHHHH------------cCCCeeEeCCCCCCCCCccchhHHHHHhcccc
Confidence 12356778888764 33333333332222 12345778877777764
No 48
>PRK06354 pyruvate kinase; Provisional
Probab=28.60 E-value=1.2e+02 Score=34.20 Aligned_cols=65 Identities=20% Similarity=0.253 Sum_probs=46.9
Q ss_pred eEEEEcCcCCHHHHHHHHHcCCceEEEecC-----hhhHhhcCCccccccccCCCccCCceEEEEecCCCC
Q 013465 44 DLIMAAQLATPEAMAFIVKHGTGIVCVSMK-----GEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGT 109 (442)
Q Consensus 44 dLv~aAe~~t~e~v~fm~~~~~Glicval~-----~~~~~~L~Lp~m~~~~~~~~~~~t~ftvsVDa~~g~ 109 (442)
.-|+-++..+|+.+..| ....|+|+-.=. .-.|+.||+|..+..............|+||...|.
T Consensus 512 ~~ILV~~~~~P~~~~~~-~~~~GiVt~~Gg~tSH~AIvAR~lgIPaVvg~~~~~~~l~~G~~v~vDg~~G~ 581 (590)
T PRK06354 512 GDILVTPSTDADMIPAI-EKAAAIITEEGGLTSHAAVVGLRLGIPVIVGVKNATSLIKDGQIITVDAARGV 581 (590)
T ss_pred CeEEEeCCCCHHHHHhH-HhcEEEEEecCCCcchHHHHHHhcCCCEEEeccchhhccCCCCEEEEECCCCE
Confidence 34666777999888875 888999987522 348999999998875322334456789999986554
No 49
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=27.83 E-value=1.8e+02 Score=30.05 Aligned_cols=135 Identities=17% Similarity=0.205 Sum_probs=81.6
Q ss_pred HHHHHHHHcC--CCccEEEEEEeCCC--CCcCChhHHHHHHHhcCCceEehHHHHH-----HHhh--cccccccccccee
Q 013465 160 ASVDLAVLAG--FDPAAVLCEVVDDD--GSMARLPKLREFAKRENLKIISIADLIR-----YRRK--RDKLVDRSSAARI 228 (442)
Q Consensus 160 aavdLarlAG--l~Paavi~ell~~d--G~~a~~~~l~~fA~~h~L~~v~i~dli~-----yr~~--~e~lV~r~~~~~l 228 (442)
|+.-|-.|.+ ..-++|+..-=... |.-.......++|.+||||+..-+.+.. .... -+-.|.-..-.-+
T Consensus 13 a~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~e~~~~l~~l~~D~ivvvayG~il 92 (307)
T COG0223 13 AVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDPEFLEELAALDPDLIVVVAYGQIL 92 (307)
T ss_pred hHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcHHHHHHHhccCCCEEEEEehhhhC
Confidence 4445555554 55555555411111 3445567899999999999998866542 1111 1111111111112
Q ss_pred c------CcCccEEEEE-----EEecCCCcEEEEEEEccCCCCCceeEEEcccCcccccccCCCCC-----ChHHHHHHH
Q 013465 229 P------TMWGPFTAYC-----YRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCD-----CGDQLALAM 292 (442)
Q Consensus 229 p------T~~G~F~~~~-----f~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~CltgDvfgS~~Cd-----Cg~qL~~Al 292 (442)
| .++|-+.+|. ||. -...|.|++.||-..+ .++-+|...--+||++...+|. -...|+.-|
T Consensus 93 p~~iL~~~~~G~iNvH~SLLPr~RG--aAPIq~aI~~Gd~~TG-vTim~M~~~lDaG~Il~q~~~~I~~~dta~~L~~kL 169 (307)
T COG0223 93 PKEILDLPPYGCINLHPSLLPRYRG--AAPIQWAILNGDTETG-VTIMQMDEGLDAGDILAQREVPIEPDDTAGSLHDKL 169 (307)
T ss_pred CHHHHhcCcCCeEEecCccCccccC--ccHHHHHHHcCCcccc-eEEEEccccCCCcceeeeEEeccCCcccHHHHHHHH
Confidence 2 2467787776 443 2346889999987665 5789999999999999998875 334666655
Q ss_pred HHHHH
Q 013465 293 QQIEA 297 (442)
Q Consensus 293 ~~I~~ 297 (442)
..++.
T Consensus 170 a~~ga 174 (307)
T COG0223 170 AELGA 174 (307)
T ss_pred HHHHH
Confidence 55544
No 50
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=27.81 E-value=5.8e+02 Score=24.85 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=67.4
Q ss_pred HHHHHHHcCCCccEEEEEEeCCCCCcCChhHHHHHHHhcCCceEehHHHHHHHhhccccccccccceecCcCccEEEEEE
Q 013465 161 SVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCY 240 (442)
Q Consensus 161 avdLarlAGl~Paavi~ell~~dG~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~e~lV~r~~~~~lpT~~G~F~~~~f 240 (442)
-++..+-.|+.+..|++.=.-.|.. -.+..|.+.++++++.-..- +. ......+.... ...+|.+++..+
T Consensus 33 i~~~l~~~g~~l~~Il~TH~H~DHi----gG~~~l~~~~~~~V~~~~~~---~~--~~~~~~v~~g~-~~~~g~~~i~v~ 102 (248)
T TIGR03413 33 VLDALEARGLTLTAILLTHHHHDHV----GGVAELLEAFPAPVYGPAEE---RI--PGITHPVKDGD-TVTLGGLEFEVL 102 (248)
T ss_pred HHHHHHHcCCeeeEEEeCCCCcccc----CCHHHHHHHCCCeEEecccc---cC--CCCcEEeCCCC-EEEECCEEEEEE
Confidence 3444455577777666643223311 12446667777776643321 00 00001111110 112356666666
Q ss_pred EecCCCcEEEEEEEccCCCCCceeEEEcccCcccccccCCCCC-C----hHHHHHHHHHHHHcCCEEEEEEeCCC
Q 013465 241 RSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCD-C----GDQLALAMQQIEAAGRGVLVYLRGHE 310 (442)
Q Consensus 241 ~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~CltgDvfgS~~Cd-C----g~qL~~Al~~I~~~G~GVlvYLr~qE 310 (442)
...-....|+++...+ . ...++||.+-+..|. + ..|+-++|+.|.+-..-.+||- +|+
T Consensus 103 ~tpGHT~g~i~~~~~~----~-------~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~~l~~~~~i~p-GH~ 165 (248)
T TIGR03413 103 AVPGHTLGHIAYYLPD----S-------PALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPDDTLVYC-AHE 165 (248)
T ss_pred ECCCCCcccEEEEECC----C-------CEEEEcCccccCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEEC-CCC
Confidence 5443345677765521 1 236789987666664 1 3588899999988776677664 465
No 51
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=27.72 E-value=1.3e+02 Score=29.75 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=37.2
Q ss_pred cCCeEEEEeCCCCC--------------CceeEEEEcCcCCHHHHHHHHHcCCceEEEecChh
Q 013465 27 ERLFVVVVDDEDRE--------------NEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGE 75 (442)
Q Consensus 27 ~G~~Viv~Dd~~re--------------~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~~~ 75 (442)
+|+.|||+||---. .-.++++|.--+.++...-+.+++.+++|+.+|..
T Consensus 123 ~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~~l~s~~D~vvc~~~P~~ 185 (220)
T COG1926 123 KGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAAELESEADEVVCLYMPAP 185 (220)
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHHHHHHhhcCeEEEEcCCcc
Confidence 57789999983211 12467888888888888889999999999988754
No 52
>KOG0875 consensus 60S ribosomal protein L5 [Translation, ribosomal structure and biogenesis]
Probab=26.25 E-value=55 Score=32.88 Aligned_cols=72 Identities=25% Similarity=0.276 Sum_probs=48.2
Q ss_pred ceeEEEEcCc--------CCHHHHHHHHHcCCceEEEecChhhHhhcCCcccccc----cc------CCCccCCceEEEE
Q 013465 42 EGDLIMAAQL--------ATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQ----KE------NDEKLCTAFTVTV 103 (442)
Q Consensus 42 EgdLv~aAe~--------~t~e~v~fm~~~~~Glicval~~~~~~~L~Lp~m~~~----~~------~~~~~~t~ftvsV 103 (442)
|||+|+++.. +.+..-|+.+.+++|++ |......+|||....+. .. ..+....+|++.+
T Consensus 70 ~gd~v~~~a~s~elpkyg~~~GLtNyaAay~TglL---LarR~l~~~gmD~~yeg~~e~~gde~~~e~idgq~~aFt~~L 146 (264)
T KOG0875|consen 70 EGDVIVRAAYAHELPKYGVKVGLTNYAAAYCTGLL---LACRLLKRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYL 146 (264)
T ss_pred cceEEEEeeccccccccccccccchhHHHHhhHHH---HHHHHHHHhCcccccccceeecCcccccccccCCCCCeEEEe
Confidence 3555555543 34567789999999887 67888999999875441 00 0123446899999
Q ss_pred ecC-CCCCCCCChh
Q 013465 104 DAK-HGTTTGVSAR 116 (442)
Q Consensus 104 Da~-~g~~TGISa~ 116 (442)
|+- .-+|||+.-.
T Consensus 147 d~GLaRtttg~kvF 160 (264)
T KOG0875|consen 147 DAGLARTTTGNKVF 160 (264)
T ss_pred cccccccCCCceee
Confidence 963 3578887654
No 53
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=25.97 E-value=1.4e+02 Score=26.36 Aligned_cols=51 Identities=12% Similarity=0.237 Sum_probs=39.0
Q ss_pred cCChhHHHHHHHHHcCCCccEEEEEEeCCCCCcCChhHHHHHHHhcCCceEe
Q 013465 154 RAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIIS 205 (442)
Q Consensus 154 R~GhtEaavdLarlAGl~Paavi~ell~~dG~~a~~~~l~~fA~~h~L~~v~ 205 (442)
--.|+...+..++..|+...+++....+++-.+ .......+++..++|++-
T Consensus 81 ~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~-~~~~~~~i~~~~gip~LG 131 (134)
T cd03109 81 SINHAFLTIEAARIKGIILNGVLGNVIVEKEGL-ATLNVETIERLTGIPVLG 131 (134)
T ss_pred cHhHHHHHHHHHHhcCCceeEEEEccCCCccch-hhhhHHHHHHhcCCCEEE
Confidence 356888999999999999999998876653222 224578888888988764
No 54
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=25.44 E-value=99 Score=35.89 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=70.7
Q ss_pred CceeEEEEcCcCCHHHHHHHHHcCCceEEEecC-----hhhHhhcCCccccccccCCCccCCceEEEE---ecCCCC-CC
Q 013465 41 NEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMK-----GEDLERLDLPLMVAQKENDEKLCTAFTVTV---DAKHGT-TT 111 (442)
Q Consensus 41 ~EgdLv~aAe~~t~e~v~fm~~~~~Glicval~-----~~~~~~L~Lp~m~~~~~~~~~~~t~ftvsV---Da~~g~-~T 111 (442)
.+|+ |+-++..+|+.+..| +...|+|+--=. .-.++.||+|.++............-.|+| |...|. ..
T Consensus 384 ~~g~-ILV~~~~~p~~~~~l-~~~~givt~~Gg~tSH~AilAR~lgIPavvg~~~~~~~l~~G~~v~v~~~Dg~~G~v~~ 461 (795)
T PRK06464 384 QPGD-VLVTDMTDPDWEPVM-KRASAIVTNRGGRTCHAAIIARELGIPAVVGTGNATEVLKDGQEVTVSCAEGDTGYVYE 461 (795)
T ss_pred CCCe-EEEECCCCHHHHHHH-HhheEEEEcCCCCcchHHHHHHHcCCCEEEccCcccceecCCCEEEEEeccCCCcEEEe
Confidence 3454 666899999999988 777888765421 347999999998875322334456778888 876555 44
Q ss_pred CCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCCccEEE
Q 013465 112 GVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVL 176 (442)
Q Consensus 112 GISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~Paavi 176 (442)
|-+...+... . ..++ ||+-+-|.+.-+.. .-+..++-.|..-.+.+
T Consensus 462 ~~~~~~~~~~--~-------~~~~--~g~~~~l~aNi~~~--------~~~~~a~~~ga~GiGL~ 507 (795)
T PRK06464 462 GLLEFEVEEV--S-------LEEM--PETPTKIMMNVGNP--------ERAFDFAALPNDGVGLA 507 (795)
T ss_pred CCchhhhhhh--h-------hhcC--CCcceEEEEcCCCH--------HHHHHHHhcCCCeEeeh
Confidence 5444322211 1 1123 68877777775542 22345555565555544
No 55
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=24.27 E-value=1.1e+02 Score=22.54 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=17.8
Q ss_pred hhHHHHHHHhcCCceEehHHHHH
Q 013465 189 LPKLREFAKRENLKIISIADLIR 211 (442)
Q Consensus 189 ~~~l~~fA~~h~L~~v~i~dli~ 211 (442)
...+++||+++|.+.||.+.+.+
T Consensus 21 r~~~E~~Ar~~G~~~IT~e~v~~ 43 (45)
T PF08369_consen 21 RDAAEKYARERGYDEITVEVVDA 43 (45)
T ss_dssp HHHHHHHHHHCT-SEE-HHHHHH
T ss_pred HHHHHHHHHHcCCCeECHHHHHh
Confidence 45689999999999999998765
No 56
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=24.11 E-value=1.2e+02 Score=24.86 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=16.0
Q ss_pred hhHHHHHHHcCCeEEEEeCCC
Q 013465 18 PRPLKTFAKERLFVVVVDDED 38 (442)
Q Consensus 18 ~~~~~~alr~G~~Viv~Dd~~ 38 (442)
.+.+..+|++|+.||++|.+.
T Consensus 39 v~qv~~qL~~G~avI~~se~~ 59 (70)
T PF06794_consen 39 VEQVKQQLKSGEAVIVFSELH 59 (70)
T ss_dssp HHHHHHHHHTTSEEEEE-TTT
T ss_pred HHHHHHHHHcCCEEEEECCcc
Confidence 456678999999999998643
No 57
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=23.97 E-value=1.4e+02 Score=31.35 Aligned_cols=54 Identities=17% Similarity=0.071 Sum_probs=36.8
Q ss_pred hhHHHHHHHHcCCCeeeecc-CCc--Cc-----ccccccCCeEEEEEeecCCCCChhhHHHHHH
Q 013465 348 YGIGAQMLRDLGVRTMKLMT-NNP--SK-----YVGLKGYGLAVAGRVPLITPIKKENKRYLET 403 (442)
Q Consensus 348 ygi~aqIL~~LGv~~irLLT-NNP--~K-----~~aL~~~Gi~V~~rvpl~~~~~~~n~~Yl~t 403 (442)
+--.+.-|-.-||++|-++| -|| +. +..|+..||+|.+ -+.......|+.|+..
T Consensus 55 ~~~cad~ii~~gi~rVVi~~D~d~~G~~~~~~~~~~L~~aGi~V~~--~l~~e~~~l~~~~~~~ 116 (360)
T PRK14719 55 VFQIADDLIAENISEVILLTDFDRAGRVYAKNIMEEFQSRGIKVNN--LIRKEIIKYSRGDLKD 116 (360)
T ss_pred hHHHHHHHHHcCCCEEEEEECCCCCCCccchHHHHHHHHCCCEEEe--ehHHHHHHHhHHhhhc
Confidence 34477777788999999988 445 23 5779999999954 2333445566666543
No 58
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=21.76 E-value=43 Score=28.32 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCCeeeeccCCcCcccccccCCeE
Q 013465 350 IGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLA 382 (442)
Q Consensus 350 i~aqIL~~LGv~~irLLTNNP~K~~aL~~~Gi~ 382 (442)
.+.|+++.+| .+|-..+.++.|.+.++.+|..
T Consensus 5 ~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~ 36 (130)
T PF00107_consen 5 MAIQLAKAMG-AKVIATDRSEEKLELAKELGAD 36 (130)
T ss_dssp HHHHHHHHTT-SEEEEEESSHHHHHHHHHTTES
T ss_pred HHHHHHHHcC-CEEEEEECCHHHHHHHHhhccc
Confidence 4679999999 8888999999999999999944
No 59
>KOG1351 consensus Vacuolar H+-ATPase V1 sector, subunit B [Energy production and conversion]
Probab=21.06 E-value=1.1e+02 Score=32.10 Aligned_cols=46 Identities=26% Similarity=0.344 Sum_probs=34.4
Q ss_pred CCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCcccceeeccCCccccCChhHHHHHHHHHcCCC
Q 013465 107 HGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFD 171 (442)
Q Consensus 107 ~g~~TGISa~DRA~Tir~LAd~~s~~~df~~PGHV~Pl~a~~gGvl~R~GhtEaavdLarlAGl~ 171 (442)
+-+-||||+.|=-..|. . |...|+-...|-- |.|-|..+||-|||-
T Consensus 145 emiqtgis~idvmnsia---r-----------gqkipifsaaglp-----hneiaaqicrqaglv 190 (489)
T KOG1351|consen 145 EMIQTGISAIDVMNSIA---R-----------GQKIPIFSAAGLP-----HNEIAAQICRQAGLV 190 (489)
T ss_pred HHHHhCchHHhhhhHHh---c-----------cCccceeecCCCC-----hhHHHHHHHHhcCcc
Confidence 34679999998766652 2 4556776665554 999999999999974
No 60
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=20.72 E-value=7.9e+02 Score=23.95 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=41.1
Q ss_pred ccEEEEEEEecCCCcEEEEEEEccCCCCCceeEEEcccCcccccccCCCCC---C--hHHHHHHHHHHHHcCCEEEEEEe
Q 013465 233 GPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCD---C--GDQLALAMQQIEAAGRGVLVYLR 307 (442)
Q Consensus 233 G~F~~~~f~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~CltgDvfgS~~Cd---C--g~qL~~Al~~I~~~G~GVlvYLr 307 (442)
|.+++.++...-....|+++.. ....++||.+-+..|. . ..|+-++++.|.+-..-.+||-
T Consensus 98 g~~~~~vi~tPGHT~ghi~~~~-------------~~~lFtGDtlf~~g~gr~f~g~~~~~~~Sl~kl~~l~~~t~i~p- 163 (251)
T PRK10241 98 LGHEFSVFATPGHTLGHICYFS-------------KPYLFCGDTLFSGGCGRLFEGTASQMYQSLKKINALPDDTLICC- 163 (251)
T ss_pred CCcEEEEEEcCCCCccceeeec-------------CCcEEEcCeeccCCcCCCCCCCHHHHHHHHHHHHcCCCCEEEEC-
Confidence 4445555543333456777753 1237799977766553 2 3689999999987766677775
Q ss_pred CCCC
Q 013465 308 GHEG 311 (442)
Q Consensus 308 ~qEg 311 (442)
++|.
T Consensus 164 gH~y 167 (251)
T PRK10241 164 AHEY 167 (251)
T ss_pred CCCC
Confidence 4664
No 61
>PRK07505 hypothetical protein; Provisional
Probab=20.62 E-value=1.1e+02 Score=31.72 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=29.5
Q ss_pred CccEEEEEEeCCCCCcCChhHHHHHHHhcCCceE
Q 013465 171 DPAAVLCEVVDDDGSMARLPKLREFAKRENLKII 204 (442)
Q Consensus 171 ~Paavi~ell~~dG~~a~~~~l~~fA~~h~L~~v 204 (442)
.-++++||-.+..|.+...+++.++|++|++.+|
T Consensus 180 ~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li 213 (402)
T PRK07505 180 KTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLY 213 (402)
T ss_pred CCEEEEEecccccCCcCCHHHHHHHHHHcCCEEE
Confidence 3578889988888999999999999999997665
No 62
>PLN02880 tyrosine decarboxylase
Probab=20.36 E-value=1.8e+02 Score=31.59 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=40.3
Q ss_pred ccCChhHHHHHHHHHcCCCccEEEEEEeC-CCCCcCChhHHHHHHHhcCCce
Q 013465 153 KRAGHTEASVDLAVLAGFDPAAVLCEVVD-DDGSMARLPKLREFAKRENLKI 203 (442)
Q Consensus 153 ~R~GhtEaavdLarlAGl~Paavi~ell~-~dG~~a~~~~l~~fA~~h~L~~ 203 (442)
-+...-|.+++-.+.+|+.|.+|++..=. ..|...+.+++.++|++||+.+
T Consensus 221 md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwl 272 (490)
T PLN02880 221 LAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWF 272 (490)
T ss_pred CCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEE
Confidence 34556677787777899999999987533 2478889999999999999876
No 63
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=20.15 E-value=99 Score=30.85 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=43.3
Q ss_pred hHHHHHHHHHcCCCccEEEEEEeCCC--C---CcCChhHHHHHHHhcCCceEehHHHHHHHhhcccc
Q 013465 158 TEASVDLAVLAGFDPAAVLCEVVDDD--G---SMARLPKLREFAKRENLKIISIADLIRYRRKRDKL 219 (442)
Q Consensus 158 tEaavdLarlAGl~Paavi~ell~~d--G---~~a~~~~l~~fA~~h~L~~v~i~dli~yr~~~e~l 219 (442)
-|+=..|||--|+.- +||-|+- + +-....+++..|+++|+.++||..|..|-.-++..
T Consensus 19 v~affa~ak~lg~s~----VeiRndl~~~~I~dg~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~ 81 (272)
T COG4130 19 VEAFFALAKRLGLSK----VEIRNDLPSNAIADGTPAAEVKALAEKAGLTIVSINALYPFNEWTEER 81 (272)
T ss_pred HHHHHHHHHHcCcce----eEEecCCCcccccCCCCHHHHHHHHHHcCcEEEEeeccccccccChHH
Confidence 467788999999874 5777762 1 23457899999999999999999987665444433
Done!