RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013465
(442 letters)
>gnl|CDD|215445 PLN02831, PLN02831, Bifunctional GTP cyclohydrolase II/
3,4-dihydroxy-2-butanone-4-phosphate synthase.
Length = 450
Score = 818 bits (2115), Expect = 0.0
Identities = 330/401 (82%), Positives = 360/401 (89%), Gaps = 1/401 (0%)
Query: 30 FVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQK 89
FVVVVDDEDRENEGDLIMAA L TPEAMAF+VKHG+GIVCVSMKGEDL+RL LPLMV K
Sbjct: 50 FVVVVDDEDRENEGDLIMAASLVTPEAMAFLVKHGSGIVCVSMKGEDLDRLRLPLMVPSK 109
Query: 90 ENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREG 149
EN+EK+ TAFTVTVDAKHGTTTGVSA DRA T+L LAS DSKP DF RPGHIFPL+YREG
Sbjct: 110 ENEEKMATAFTVTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGHIFPLRYREG 169
Query: 150 GVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDD-DGSMARLPKLREFAKRENLKIISIAD 208
GVLKRAGHTEA+VDLAVLAG P VLCE+V+D DGSMARLP+LR+FA+ LKIISIAD
Sbjct: 170 GVLKRAGHTEAAVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIAD 229
Query: 209 LIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVH 268
LIRYRRKR+KLV+R++ AR+PT WG FTAYCYRS LDGIEHIA VKGDIGDGQD+LVRVH
Sbjct: 230 LIRYRRKREKLVERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVKGDIGDGQDVLVRVH 289
Query: 269 SECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDD 328
SECLTGDIFGSARCDCG+QLALAMQ IE AGRGVLVYLRGHEGRGIGLGHKLRAYNLQD+
Sbjct: 290 SECLTGDIFGSARCDCGNQLALAMQLIEKAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDE 349
Query: 329 GRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVP 388
GRDTVEANEELGLPVDSREYGIGAQ+LRDLGVRTM+LMTNNP+KY GLKGYGLAV GRVP
Sbjct: 350 GRDTVEANEELGLPVDSREYGIGAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409
Query: 389 LITPIKKENKRYLETKRAKMGHIYGLESNGRLTNLINGNGK 429
L+TPI KENKRYLETKR KMGH+YG + G ++ L +
Sbjct: 410 LLTPITKENKRYLETKRTKMGHVYGSDLGGHVSGLESAETN 450
>gnl|CDD|181774 PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 402
Score = 673 bits (1739), Expect = 0.0
Identities = 246/381 (64%), Positives = 301/381 (79%), Gaps = 2/381 (0%)
Query: 30 FVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQK 89
V+VVDDEDRENEGDLI AA+ ATPE +AF+V+H +G VCV + ED +RLDLP MVA
Sbjct: 19 AVIVVDDEDRENEGDLIFAAEKATPELVAFMVRHTSGYVCVPLTEEDADRLDLPPMVAH- 77
Query: 90 ENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREG 149
N + TAFTV+VDA +G TTG+SA DRATT+ LA SKP DF RPGH+FPL+ + G
Sbjct: 78 -NQDSHGTAFTVSVDAANGVTTGISAADRATTIRLLADPASKPADFTRPGHVFPLRAKPG 136
Query: 150 GVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADL 209
GVL+RAGHTEA+VDLA LAG PA V+CE+V++DG+MAR+P+LR FA +L +I+IADL
Sbjct: 137 GVLRRAGHTEAAVDLARLAGLQPAGVICEIVNEDGTMARVPELRVFADEHDLALITIADL 196
Query: 210 IRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHS 269
I YRR+ +KLV+R AR+PT +G F A Y SILDG EH+A+VKGDIGDG+D+LVRVHS
Sbjct: 197 IAYRRRHEKLVEREVEARLPTRFGEFRAIGYTSILDGKEHVALVKGDIGDGEDVLVRVHS 256
Query: 270 ECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDG 329
ECLTGD+FGS RCDCG QL A+ QI GRGV++Y+RG EGRGIGL HKLRAY LQD+G
Sbjct: 257 ECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMRGQEGRGIGLLHKLRAYQLQDEG 316
Query: 330 RDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 389
DTV+AN +LG P D+R+YGIGAQ+L DLGVR+M+L+TNNP K GL+GYGL V RVPL
Sbjct: 317 YDTVDANLKLGFPADARDYGIGAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVPL 376
Query: 390 ITPIKKENKRYLETKRAKMGH 410
+EN+RYL TKR +MGH
Sbjct: 377 PVRANEENERYLRTKRDRMGH 397
>gnl|CDD|236465 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II/unknown
domain fusion protein; Provisional.
Length = 555
Score = 560 bits (1446), Expect = 0.0
Identities = 229/404 (56%), Positives = 291/404 (72%), Gaps = 9/404 (2%)
Query: 31 VVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKE 90
VVVVDDE+RENEGDLI AAQ ATPE + F+ G++C++M GE L+ LDLPLMV
Sbjct: 21 VVVVDDENRENEGDLICAAQFATPEMINFMATEARGLICLAMTGERLDELDLPLMVD--R 78
Query: 91 NDEKLCTAFTVTVDA--KHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYRE 148
N + TAFTV++DA + G +TG+SA DRA T+ + D+KP D RPGHIFPL+ +E
Sbjct: 79 NTDSNQTAFTVSIDAGPELGVSTGISAEDRARTIQVAINPDTKPEDLRRPGHIFPLRAKE 138
Query: 149 GGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIAD 208
GGVLKRAGHTEA+VDLA LAG PA V+CE+ + DGSMARLP+L+E+AK+ LK+ISIAD
Sbjct: 139 GGVLKRAGHTEAAVDLARLAGLYPAGVICEIQNPDGSMARLPELKEYAKQHGLKLISIAD 198
Query: 209 LIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGD--GQDILVR 266
LI YR + ++ V R + A++P+ +G F AY YR+ LDG EH+A+VKGD + + +LVR
Sbjct: 199 LISYRLQNERFVYREAVAKLPSQFGQFQAYGYRNELDGSEHVALVKGDPANFKDEPVLVR 258
Query: 267 VHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQ 326
+HSECLTGD FGS RCDC QL A++ IE G GV+VYLR EGRGIGL +KL+AY+LQ
Sbjct: 259 MHSECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYLR-QEGRGIGLINKLKAYSLQ 317
Query: 327 DDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGR 386
D G DTVEANE LG P D R YG+GAQ+L DLG++ ++L+TNNP K GL GYGL V R
Sbjct: 318 DGGLDTVEANERLGFPADLRNYGVGAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDR 377
Query: 387 VPLITPIKKENKRYLETKRAKMGHIYGLESNGRLTNLINGNGKP 430
VPL+ N YL TK K+GH+ L +T I +G+P
Sbjct: 378 VPLLIEANDYNAEYLATKAEKLGHL--LLQTYLVTIAIAWDGEP 419
>gnl|CDD|237587 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II-like protein;
Provisional.
Length = 367
Score = 369 bits (949), Expect = e-126
Identities = 167/358 (46%), Positives = 218/358 (60%), Gaps = 13/358 (3%)
Query: 31 VVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKE 90
V++VD+EDRENEGDL+MAA+ TPEA+ F+ KHG G++C+++ E E+L LPLM +
Sbjct: 19 VILVDEEDRENEGDLVMAAEFVTPEAINFMAKHGRGLICLTLTEERCEQLGLPLMTYR-- 76
Query: 91 NDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGG 150
N + T FTV+++A G TTG+SA DRA T+ +RD+KP D +PGHIFPL + GG
Sbjct: 77 NGTQYGTNFTVSIEAAEGVTTGISAADRARTIQAAVARDAKPEDIVQPGHIFPLMAQPGG 136
Query: 151 VLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLI 210
VL RAGHTEA DLA LAG PAAV+CE++ DDG+MARLP L EFAK LKI +IADLI
Sbjct: 137 VLVRAGHTEAGCDLAALAGLTPAAVICEIMKDDGTMARLPDLEEFAKEHGLKIGTIADLI 196
Query: 211 RYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSE 270
YR + + +V+R + + T G F YR G H+A+VKG I ++ LVRVH
Sbjct: 197 HYRSRTESIVERVAERPMQTAHGEFRLVAYRDKPSGSTHLALVKGTICPDEETLVRVHEP 256
Query: 271 CLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGR 330
D+ + L AM I AG GV+V L +L D R
Sbjct: 257 LSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVL----------LNCGDDGEHLLDRFR 306
Query: 331 DTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVP 388
A PVD R YGIGAQ+LRDLGV M+L++ +P K+ + G+GL V G VP
Sbjct: 307 AEEAAAALKRRPVDYRTYGIGAQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVP 363
>gnl|CDD|238348 cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA). GTP
cyclohydrolase II catalyzes the conversion of GTP to
2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'
phosphate, formate, pyrophosphate (APy), and GMP in the
biosynthetic pathway of riboflavin. Riboflavin is the
precursor molecule for the synthesis of the coenzymes
flavin mononucleotide (FMN) and flavin adenine
dinucleotide (FAD) which are essential to cell
metabolism. The enzyme is present in plants and numerous
pathogenic bacteria, especially gram negative organisms,
who are dependent on endogenous synthesis of the vitamin
because they lack an appropriate uptake system. For
animals and humans, which lack this biosynthetic
pathway, riboflavin is the essential vitamin B2. GTP
cyclohydrolase II requires magnesium ions for activity
and has a bound catalytic zinc. The functionally active
form is thought to be a homodimer. A paralogous protein
is encoded in the genome of Streptomyces coelicolor,
which converts GTP to
2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone
5'-phosphate (FAPy), an activity that has otherwise been
reported for unrelated GTP cyclohydrolases III.
Length = 193
Score = 325 bits (836), Expect = e-111
Identities = 113/193 (58%), Positives = 144/193 (74%), Gaps = 1/193 (0%)
Query: 219 LVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFG 278
LV++ + A +PT +G F + DG EH+A+VKGD DG+ +LVRVHSECLTGD+FG
Sbjct: 1 LVEKVAEAPLPTRFGDFRIVAFEDTDDGKEHVALVKGDPADGEPVLVRVHSECLTGDVFG 60
Query: 279 SARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEE 338
S RCDCG QL A+++I G GVL+YLR EGRGIGL +KLRAY LQD G DTVEANE
Sbjct: 61 SLRCDCGPQLEEALEEIAEEGGGVLLYLR-QEGRGIGLANKLRAYALQDQGLDTVEANEA 119
Query: 339 LGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENK 398
LG P D+R+YG+ AQ+LRDLG+++++L+TNNP K L+GYG+ V RVPL +ENK
Sbjct: 120 LGFPADARDYGLAAQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERVPLEVEPNEENK 179
Query: 399 RYLETKRAKMGHI 411
YL+TKR KMGH+
Sbjct: 180 GYLKTKRDKMGHL 192
>gnl|CDD|236464 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 387
Score = 328 bits (842), Expect = e-109
Identities = 157/382 (41%), Positives = 229/382 (59%), Gaps = 20/382 (5%)
Query: 32 VVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGED-LERLDLPLMVAQKE 90
V++ D +RENE D + AQ+ T E + F + +G G++C++ ED L+R L E
Sbjct: 14 VILIDRNRENEADFVYPAQIITEEVVNFFLSYGKGLLCLTADEEDLLKRGFFKLPSNGGE 73
Query: 91 NDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGG 150
T F + VD +GT TG+SA +RA T LA +F PGH+ L GG
Sbjct: 74 ------TNFFIPVD--YGTGTGISASERALTCRKLAE-GLYVHEFRYPGHVTLL----GG 120
Query: 151 VL--KRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIAD 208
+ +R GHTEAS++L+ L GF AV+ E++D+ G L + + A++ +L ++ I D
Sbjct: 121 IGFNRRRGHTEASLELSELLGFKRYAVIVEILDEKGDSHDLDYVLKLAEKFSLPVLEIDD 180
Query: 209 LIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVH 268
+ + +R +L+ + A++PT +G F + + LDG EH+A+VK +G+ LVR+H
Sbjct: 181 VWKEFVRRKQLIKVKAEAKLPTDYGEFEIVSFENHLDGKEHVAIVKEPLGE--VPLVRIH 238
Query: 269 SECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDD 328
SEC+TGD S RCDCG QLA ++ I G G+L+YLR EGRGIGL +K++AY LQD
Sbjct: 239 SECVTGDTLSSLRCDCGSQLANFLRMISKEG-GILIYLR-QEGRGIGLSNKIKAYELQDK 296
Query: 329 GRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVP 388
G DTVEAN LG D R+Y Q+L+ LG+ ++L+TNNP K L+ YG+ V VP
Sbjct: 297 GLDTVEANRALGFKEDERDYAAAFQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356
Query: 389 LITPIKKENKRYLETKRAKMGH 410
L + K N+ YL+TK K+GH
Sbjct: 357 LYGEVTKYNRFYLKTKVEKLGH 378
>gnl|CDD|216197 pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 4-phosphate
synthase. 3,4-Dihydroxy-2-butanone 4-phosphate is
biosynthesised from ribulose 5-phosphate and serves as
the biosynthetic precursor for the xylene ring of
riboflavin. Sometimes found as a bifunctional enzyme
with pfam00925.
Length = 193
Score = 298 bits (766), Expect = e-101
Identities = 109/184 (59%), Positives = 142/184 (77%), Gaps = 3/184 (1%)
Query: 30 FVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQK 89
V+VVDDEDRENEGDL++AA+ TPE++ F+++H G++CV++ E +RL LP MV
Sbjct: 13 PVIVVDDEDRENEGDLVIAAEKVTPESVNFMIRHARGLICVALTEERADRLGLPPMVD-- 70
Query: 90 ENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREG 149
N ++ TAFTV+VDAK GTTTG+SA DRA T+ LA ++ P DF RPGH+FPL+ +EG
Sbjct: 71 RNTDRFGTAFTVSVDAK-GTTTGISAADRALTIRALADPNAFPEDFVRPGHVFPLRAKEG 129
Query: 150 GVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADL 209
GVL+R GHTEA+VDLA LAG PAAV+CE+++DDG+MARLP L EFAK L +I+I DL
Sbjct: 130 GVLERRGHTEAAVDLARLAGLTPAAVICEILNDDGTMARLPDLEEFAKEHGLPLITIEDL 189
Query: 210 IRYR 213
I YR
Sbjct: 190 IEYR 193
>gnl|CDD|181775 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 339
Score = 294 bits (755), Expect = 3e-97
Identities = 146/359 (40%), Positives = 205/359 (57%), Gaps = 54/359 (15%)
Query: 31 VVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKE 90
+++VDDEDRENEGDL+ AA +TPE + F+ H G++CVS+ E ++L+LP MV+ +
Sbjct: 19 LIMVDDEDRENEGDLVYAAIFSTPEKVNFMATHARGLICVSLTKELAKKLELPPMVS--K 76
Query: 91 NDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGG 150
N TAFTV++DAK TT G+SA +R T+ LA SKP DF RPGHIFPL ++GG
Sbjct: 77 NTSNHETAFTVSIDAKEATT-GISAFERDMTIKLLADDTSKPSDFVRPGHIFPLIAKDGG 135
Query: 151 VLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLI 210
VL R GHTE SVDL LAG P AV+CE++ +DG+MAR L +FAK+ NLK+I ++DL+
Sbjct: 136 VLVRTGHTEGSVDLCKLAGLKPVAVICEIMKEDGTMARRDDLEDFAKKHNLKMIYVSDLV 195
Query: 211 RYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILD--GIEHIAMVKGDIGDGQDILVRVH 268
YR K + L+ F A Y + LD EHIA G+I V+ H
Sbjct: 196 EYRLKNESLIKEEEKEESEFA--GFKAEKY-TFLDHLQNEHIAFKFGEIKLTP--NVKFH 250
Query: 269 S-----ECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAY 323
E LT D F +L A++ ++ G GVL++L
Sbjct: 251 KIGSDFELLTSDKF--------SELLKAIEYLKKNG-GVLIFLNTE-------------- 287
Query: 324 NLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSK-YVGLKGYGL 381
+ E N+ ++YGIGAQ+L+ LG++ +KL++++ K YVGL G+GL
Sbjct: 288 --------SKENNQV-------KDYGIGAQILKYLGIKDIKLLSSSEDKEYVGLSGFGL 331
>gnl|CDD|223186 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase
[Coenzyme metabolism].
Length = 203
Score = 289 bits (741), Expect = 7e-97
Identities = 109/189 (57%), Positives = 143/189 (75%), Gaps = 3/189 (1%)
Query: 30 FVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQK 89
V+VVDDEDRENEGDLI AA+ TPE +AF+ +H +G++CV++ E +RL LP MV
Sbjct: 18 PVIVVDDEDRENEGDLIFAAEAVTPEQIAFMRRHASGLICVALTEERAKRLGLPPMVD-- 75
Query: 90 ENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREG 149
N + TAFTV+VDA+ TTTG+SA DRA T+ LA +KP DF RPGH+FPL+ ++G
Sbjct: 76 NNTDAHGTAFTVSVDARE-TTTGISAADRALTIRALADPGAKPSDFRRPGHVFPLRAKDG 134
Query: 150 GVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADL 209
GVL+R GHTEA+VDLA LAG PA V+CE+++DDG+MARLP+L EFAK L +I+I DL
Sbjct: 135 GVLERRGHTEAAVDLARLAGLKPAGVICEIMNDDGTMARLPELEEFAKEHGLPVITIEDL 194
Query: 210 IRYRRKRDK 218
I YR+K ++
Sbjct: 195 IEYRKKHER 203
>gnl|CDD|234745 PRK00393, ribA, GTP cyclohydrolase II; Reviewed.
Length = 197
Score = 284 bits (728), Expect = 5e-95
Identities = 99/196 (50%), Positives = 130/196 (66%), Gaps = 1/196 (0%)
Query: 220 VDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGS 279
+ R + A++PT WG F + + G EH+A+V GDI + +LVRVHSECLTGD S
Sbjct: 3 LKRVAEAKLPTPWGDFLMVGFEELATGKEHVALVFGDISGTEPVLVRVHSECLTGDALFS 62
Query: 280 ARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEEL 339
RCDCG QL A+++I GRG+L+YLR EGRGIGL +K+RAY LQD G DTVEAN +L
Sbjct: 63 LRCDCGFQLEAALERIAEEGRGILLYLR-QEGRGIGLLNKIRAYALQDQGLDTVEANHQL 121
Query: 340 GLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKR 399
G D R+Y + A ML+ LGV+ ++L+TNNP K L G+ + RVPLI N+
Sbjct: 122 GFAADERDYTLAADMLKALGVKKVRLLTNNPKKVEALTEAGINIVERVPLIVGRNPHNEH 181
Query: 400 YLETKRAKMGHIYGLE 415
YL+TK KMGH+ L+
Sbjct: 182 YLKTKAEKMGHLLSLD 197
>gnl|CDD|223878 COG0807, RibA, GTP cyclohydrolase II [Coenzyme metabolism].
Length = 193
Score = 283 bits (727), Expect = 5e-95
Identities = 112/193 (58%), Positives = 143/193 (74%), Gaps = 2/193 (1%)
Query: 218 KLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIF 277
LV+R + A++PT G F YR +DG EH+A+VKGDI + +LVRVHSECLTGD+
Sbjct: 1 PLVERVAEAKLPTELGEFRIVGYRDKIDGKEHLALVKGDISA-EPVLVRVHSECLTGDVL 59
Query: 278 GSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANE 337
GS RCDCG+QL A+++I G GV+VYLR EGRGIGL +K+RAY LQD G DTVEAN
Sbjct: 60 GSLRCDCGEQLEAALRRIAEEGSGVVVYLR-QEGRGIGLLNKIRAYALQDKGADTVEANL 118
Query: 338 ELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKEN 397
LG P D R+YGIGAQ+L+DLG++ ++L+TNNP K GL+G+G+ V RVPLI EN
Sbjct: 119 ALGFPADERDYGIGAQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLIVGANPEN 178
Query: 398 KRYLETKRAKMGH 410
+ YL+TK+ KMGH
Sbjct: 179 EFYLKTKKEKMGH 191
>gnl|CDD|216196 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II. GTP
cyclohydrolase II catalyzes the first committed step in
the biosynthesis of riboflavin.
Length = 169
Score = 281 bits (722), Expect = 1e-94
Identities = 110/170 (64%), Positives = 132/170 (77%), Gaps = 1/170 (0%)
Query: 220 VDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGS 279
V+R + A +PT +G F YR ++DG EH+A+VKGDI + +LVRVHSECLTGD+FGS
Sbjct: 1 VERVAEAPLPTRFGEFRLVAYRDLVDGKEHLALVKGDISPDEPVLVRVHSECLTGDVFGS 60
Query: 280 ARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEEL 339
RCDCG+QL A+++I GRGVLVYLR EGRGIGL +KL+AY LQD G DTVEAN L
Sbjct: 61 LRCDCGEQLEKALRRIAEEGRGVLVYLR-QEGRGIGLLNKLKAYALQDQGLDTVEANLAL 119
Query: 340 GLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 389
G P D R+YGIGAQ+LRDLGVR M+L+TNNP K VGL+GYGL V RVPL
Sbjct: 120 GFPDDLRDYGIGAQILRDLGVRKMRLLTNNPRKIVGLEGYGLEVVERVPL 169
>gnl|CDD|171535 PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II-like protein;
Provisional.
Length = 369
Score = 269 bits (690), Expect = 4e-87
Identities = 152/360 (42%), Positives = 207/360 (57%), Gaps = 12/360 (3%)
Query: 31 VVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKE 90
V++VDDEDRENEGDL++AA+ +A+ F+ + G++C+++ E +RL L MV
Sbjct: 19 VLLVDDEDRENEGDLLLAAERCDAQAINFMAREARGLICLTLTDEHCQRLGLEQMVPS-- 76
Query: 91 NDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGG 150
N TAFTV+++A G TTG+SA DRA TV + +++P D +PGHIFPL+ REGG
Sbjct: 77 NGSVFSTAFTVSIEAATGVTTGISAADRARTVAAAVAPNARPEDLVQPGHIFPLRAREGG 136
Query: 151 VLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLI 210
VL RAGHTEA DLA LAGF PA+V+ EV++DDG+MAR P L FA + +KI +IADLI
Sbjct: 137 VLTRAGHTEAGCDLARLAGFSPASVIVEVMNDDGTMARRPDLEVFAAKHGIKIGTIADLI 196
Query: 211 RYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSE 270
YR + + R +PT+ G F Y ++G H+AMV GDI Q LVRVH
Sbjct: 197 HYRLSTEHTIKRIGERELPTVHGTFRLVTYEDRIEGGVHMAMVMGDIRREQPTLVRVHVI 256
Query: 271 CLTGDIFGSARCDCGD-QLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDG 329
D+ G+ + L A+Q++ G GV+V L HE L R L
Sbjct: 257 DPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANHESSQALLE---RIPQLTQPP 313
Query: 330 RDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 389
R + + E G GAQ+L+DLGV ++ + P KY GL GY L V +P
Sbjct: 314 RQYQRSQSRI-----YSEVGTGAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVESIPF 367
>gnl|CDD|129596 TIGR00505, ribA, GTP cyclohydrolase II. Several members of the
family are bifunctional, involving both ribA and ribB
function. In these cases, ribA tends to be on the
C-terminal end of the protein and ribB tends to be on
the N-terminal. The function of archaeal members of the
family has not been demonstrated and is assigned
tentatively [Biosynthesis of cofactors, prosthetic
groups, and carriers, Riboflavin, FMN, and FAD].
Length = 191
Score = 249 bits (637), Expect = 1e-81
Identities = 100/191 (52%), Positives = 130/191 (68%), Gaps = 1/191 (0%)
Query: 221 DRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSA 280
+R + A++PT +G F + G +H+A+VKGDI D+LVR+HSECLTGD S
Sbjct: 1 ERVAEAKLPTPYGDFYMVGFEEPATGKDHVALVKGDISAHTDVLVRIHSECLTGDALHSL 60
Query: 281 RCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELG 340
RCDCG QL A++QI GRGVL+YLR EGRGIGL +KLRAY LQD G DTV+AN LG
Sbjct: 61 RCDCGFQLEAALKQIAEEGRGVLIYLR-QEGRGIGLINKLRAYALQDKGYDTVQANLMLG 119
Query: 341 LPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRY 400
P D R++ + A +L DLGV+ ++L+TNNP K LK G+ + RVPLI + N+ Y
Sbjct: 120 FPADERDFSLCADILEDLGVKKVRLLTNNPKKIEILKKAGINIVERVPLIVGRNENNEGY 179
Query: 401 LETKRAKMGHI 411
L+TK KMGH+
Sbjct: 180 LDTKAEKMGHL 190
>gnl|CDD|235119 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 217
Score = 248 bits (634), Expect = 1e-80
Identities = 99/184 (53%), Positives = 134/184 (72%), Gaps = 2/184 (1%)
Query: 31 VVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKE 90
V+V+DDEDRENEGD+I AA+ T E MA ++HG+GIVC+ + E ++LDLP+MV +
Sbjct: 29 VMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMV--EN 86
Query: 91 NDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGG 150
N + TAFTVT++A G TTGVSA DR TT+ + +KP D NRPGH+FPL+ + GG
Sbjct: 87 NTSQYGTAFTVTIEAAEGVTTGVSAADRITTIRAAIADGAKPSDLNRPGHVFPLRAQPGG 146
Query: 151 VLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLI 210
VL R GHTEA++DL LAG PA VLCE+ +DDG+MAR P+ FAK+ N+ +++I DL+
Sbjct: 147 VLTRRGHTEATIDLMTLAGLKPAGVLCELTNDDGTMARAPECIAFAKQHNMPVLTIEDLV 206
Query: 211 RYRR 214
YR+
Sbjct: 207 AYRQ 210
>gnl|CDD|232999 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase.
Several members of the family are bifunctional,
involving both ribA and ribB function. In these cases,
ribA tends to be on the C-terminal end of the protein
and ribB tends to be on the N-terminal [Biosynthesis of
cofactors, prosthetic groups, and carriers, Riboflavin,
FMN, and FAD].
Length = 199
Score = 243 bits (621), Expect = 5e-79
Identities = 103/189 (54%), Positives = 133/189 (70%), Gaps = 3/189 (1%)
Query: 26 KERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLM 85
K+ V+V DDEDRENEGDLI+AA+ TPE +AF+ +H G++CV++ + ++LDLP M
Sbjct: 13 KKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMRRHAGGLICVAITPDIADKLDLPPM 72
Query: 86 VAQKENDEKLCTAFTVTVDAKHG-TTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPL 144
V N TA T T+ H T TG+SA DRA T+ + KP DF RPGH+FPL
Sbjct: 73 VDI--NTSASGTASTFTITVAHRKTFTGISANDRALTIRAALADVVKPSDFRRPGHVFPL 130
Query: 145 KYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKII 204
+ +GGVL R GHTEASVDLA LAG PA V+CE+++DDG+MAR P+L E+AK+ NLK+I
Sbjct: 131 RAADGGVLTRGGHTEASVDLAELAGLKPAGVICEMMNDDGTMARKPELMEYAKKHNLKLI 190
Query: 205 SIADLIRYR 213
SI DLI YR
Sbjct: 191 SIEDLIEYR 199
>gnl|CDD|167278 PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 214
Score = 232 bits (593), Expect = 1e-74
Identities = 98/188 (52%), Positives = 135/188 (71%), Gaps = 2/188 (1%)
Query: 31 VVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKE 90
V+V+DDEDRENEGDLI A+ TPE MA ++++G+GIVC+ + E ++LDLP MV
Sbjct: 29 VLVLDDEDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCITDELCQQLDLPPMVQHNT 88
Query: 91 NDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGG 150
+ K TAFTVT++A G +TGVSA DR TT+ + ++KP D +RPGH+FPL+ GG
Sbjct: 89 SVNK--TAFTVTIEAAKGVSTGVSAADRVTTIQAAIADNAKPSDLHRPGHVFPLRAANGG 146
Query: 151 VLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLI 210
VL R GHTEA+VDLA LAG+ A V+CE+ +DDG+MAR P++ EFAK+ +++I DL+
Sbjct: 147 VLTRRGHTEAAVDLARLAGYKEAGVICEITNDDGTMARTPEIVEFAKKFGYAVVTIEDLV 206
Query: 211 RYRRKRDK 218
YR K +
Sbjct: 207 EYRLKYNI 214
>gnl|CDD|179162 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 218
Score = 203 bits (517), Expect = 3e-63
Identities = 91/192 (47%), Positives = 132/192 (68%), Gaps = 2/192 (1%)
Query: 26 KERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLM 85
+E V+++DDEDRENEGD+I + + T MA +++ +GIVC+ + ++L+LP M
Sbjct: 25 REGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCLTDAQADKLELPPM 84
Query: 86 VAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLK 145
V N+ TAFTV+++AKHG TTGVSA+DR TT+ T A+ +KP D RPGH+FPL+
Sbjct: 85 VV--NNNSANQTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLR 142
Query: 146 YREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIIS 205
R GGVL R GHTE +VDL +AG PA VLCE+ + DG+MA+ P++ F K N+ +++
Sbjct: 143 ARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGTMAKTPEIIAFGKLHNMPVLT 202
Query: 206 IADLIRYRRKRD 217
I D++ YR + D
Sbjct: 203 IEDMVMYRNQFD 214
>gnl|CDD|134031 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 230
Score = 191 bits (486), Expect = 2e-58
Identities = 90/186 (48%), Positives = 125/186 (67%), Gaps = 2/186 (1%)
Query: 31 VVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKE 90
V+++DD DRENE DLI+AA T MA +++ G+GIVC+ + GE L+RL+LP MV
Sbjct: 34 VILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETLDRLELPPMVDS-- 91
Query: 91 NDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGG 150
N + TAFTV+++A+ G TTGVSA DR TT+ + ++ GD PGH+FPL+ + GG
Sbjct: 92 NRSRYSTAFTVSIEAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPGHVFPLRAQPGG 151
Query: 151 VLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLI 210
VL R GHTE SVDLA LAG PA VLCE+++ DG+M R L +A +E L ++I +L
Sbjct: 152 VLTRRGHTEGSVDLAALAGLRPAGVLCELMNADGTMMRGASLERYAAKEGLVALAIDELA 211
Query: 211 RYRRKR 216
+ + R
Sbjct: 212 AHLQAR 217
>gnl|CDD|236340 PRK08815, PRK08815, GTP cyclohydrolase; Provisional.
Length = 375
Score = 171 bits (436), Expect = 2e-49
Identities = 93/256 (36%), Positives = 135/256 (52%), Gaps = 20/256 (7%)
Query: 160 ASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRD-- 217
+V++A LA PA V + D + FA + +++ADL
Sbjct: 123 GAVEIARLALLLPAMVAVPLPVHDEAA--------FA---GCQALALADLDAGCATSAAA 171
Query: 218 --KLVDRSSAARIPTMWGPFTAYC-YRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTG 274
+LV R +P T + +R + + +A+V G + VRVHS CLTG
Sbjct: 172 GYELVTR---TPVPLRGLGMTEFVVFRGGVAQRDQVAIVVGQPDLSSAVPVRVHSSCLTG 228
Query: 275 DIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVE 334
D+FGS +CDCGDQL + +++ G GVL+YL EGRG G+ K+RAY Q G DT++
Sbjct: 229 DLFGSLKCDCGDQLRHGLAKLKELGGGVLLYL-DQEGRGNGIAAKMRAYGYQHAGLDTID 287
Query: 335 ANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIK 394
A+ +LG D R YG MLR LG+ ++L+TNNP+K L+ G+ V R+ + I
Sbjct: 288 ADAQLGFGPDERRYGSAVAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIRVTGRIT 347
Query: 395 KENKRYLETKRAKMGH 410
EN+RYL TK + GH
Sbjct: 348 AENERYLRTKADRAGH 363
>gnl|CDD|235601 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Validated.
Length = 219
Score = 76.6 bits (189), Expect = 4e-16
Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 29/199 (14%)
Query: 31 VVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLM---VA 87
V++ D + RE E D++ A T +++ + K+ G++C + + + L L + +
Sbjct: 16 VLIYDFDGREEEVDMVFYAGAVTWKSIYTLRKNAGGLICYATSNSEGKTLGLNFLAEILK 75
Query: 88 QKENDEKLCT--------AFTVTVDAKH-GTTTGVSARDRATT------VLTLASRDSKP 132
+ E KL AF++ V+ H T TG+S DRA T V+ LA + +
Sbjct: 76 RHELYRKLVKKPSYGDEPAFSLWVN--HVKTKTGISDYDRALTIRELHKVVELAKTNPEE 133
Query: 133 ------GDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSM 186
+F PGH+ L R G+ +R GHTE S+ LA AG +P+AV+ E++D+ S+
Sbjct: 134 AREEFYENFYSPGHVPILIGR--GIRERRGHTELSIALAQAAGLEPSAVIAEMLDEKLSL 191
Query: 187 ARLPKLREFAKRENLKIIS 205
K ++ AK ++
Sbjct: 192 -SKEKAKKIAKNLGFPLVE 209
>gnl|CDD|235959 PRK07198, PRK07198, hypothetical protein; Validated.
Length = 418
Score = 47.7 bits (114), Expect = 7e-06
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 15/147 (10%)
Query: 256 DIGDGQ-DILVRVHSECLTGDIFGSARCDCGDQLALAMQQ-IEAA---GRGVLVYLRGHE 310
D+ D + ++ RVH EC D+FGS C C L +++ I A G G++VY R E
Sbjct: 232 DLADPETELTCRVHDECNGSDVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYNR-KE 290
Query: 311 GRGIGLGHKLRAYNL---QDDGRDTVE---ANEELGLPV-DSREYGIGAQMLRDLGVRTM 363
GR +G K YN Q G DT A E V D R + +L LG+R +
Sbjct: 291 GRALGEVTKFLVYNARKRQVGG-DTAATYFARTECVAGVQDMRFQELMPDVLHWLGIRRI 349
Query: 364 -KLMTNNPSKYVGLKGYGLAVAGRVPL 389
+L++ + KY + G G+ V RVP+
Sbjct: 350 HRLVSMSNMKYDAITGSGIEVGERVPI 376
>gnl|CDD|173952 cd08193, HVD, 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the
oxidation of 5-hydroxyvalerate to 5-oxovalerate with
NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD)
is an iron-containing (type III) NAD-dependent alcohol
dehydrogenase. It plays a role in the cyclopentanol
metabolism biochemical pathway. It catalyzes the
oxidation of 5-hydroxyvalerate to 5-oxovalerate with
NAD+ as cofactor. This cyclopentanol (cpn) degradation
pathway is present in some bacteria which can use
cyclopentanol as sole carbon source. In Comamonas sp.
strain NCIMB 9872, this enzyme is encoded by the CpnD
gene.
Length = 376
Score = 32.9 bits (76), Expect = 0.30
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 337 EELGLPVDSREYGIGAQMLRDLGVRTMK---LMTNNP 370
+LG+P RE G+ L L MK L+ NNP
Sbjct: 327 ADLGIPQRLREVGVTEDDLPMLAEDAMKQTRLLVNNP 363
>gnl|CDD|215932 pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase.
Length = 323
Score = 29.9 bits (68), Expect = 3.1
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 333 VEANEELGLPVDSREYGIGAQMLRDLGVRTMK--LMTNNP 370
E +LGLP + GI + L L ++ + NP
Sbjct: 276 PELLRDLGLPTSLSDLGITEEDLDKLAEAALRDGCLLTNP 315
>gnl|CDD|183361 PRK11890, PRK11890, phosphate acetyltransferase; Provisional.
Length = 312
Score = 29.2 bits (66), Expect = 4.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 39 RENEGDLIMAAQLATPEAMAFIVKHGTGI 67
RE E + +M L T E M+ +V TG+
Sbjct: 93 REGEAEALMKGSLHTDELMSAVVARDTGL 121
>gnl|CDD|220506 pfam09989, DUF2229, CoA enzyme activase uncharacterized domain
(DUF2229). Members of this family include various
bacterial hypothetical proteins, as well as CoA enzyme
activases. The exact function of this domain has not, as
yet, been defined.
Length = 218
Score = 27.9 bits (63), Expect = 9.5
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 11/59 (18%)
Query: 294 QIEAAGRGVLVYLRGHEGRGIGL-GHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIG 351
+ G L YL +GI L G Y++ D E N G+P GI
Sbjct: 163 DLRKKGEEALAYLEEEGKKGIVLLGR---PYHIYDP-----EIN--HGIPEKLTSLGIA 211
>gnl|CDD|234375 TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase,
nitrilotriacetate monooxygenase family. This model
represents a distinctive clade, in which all
characterized members are FMN-binding, within the larger
family of luciferase-like monooxygenases (LLM), among
which there are both FMN- and F420-binding enzymes. A
well-characterized member is nitrilotriacetate
monooxygenase from Aminobacter aminovorans
(Chelatobacter heintzii), where nitrilotriacetate is a
chelating agent used in detergents [Unknown function,
Enzymes of unknown specificity].
Length = 422
Score = 28.2 bits (64), Expect = 9.8
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 148 EGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIA 207
EGG+ +G T +DL+ +D A L ++ + G +R + E A+RENL ++
Sbjct: 293 EGGLALLSGWT--GIDLS---QYDLDAPLPDLPTEAGQKSRFDLILELARRENL---TLR 344
Query: 208 DLIRY 212
L
Sbjct: 345 QLAER 349
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.399
Gapped
Lambda K H
0.267 0.0808 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,116,484
Number of extensions: 2350625
Number of successful extensions: 2200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2155
Number of HSP's successfully gapped: 39
Length of query: 442
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 342
Effective length of database: 6,502,202
Effective search space: 2223753084
Effective search space used: 2223753084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)