RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013465
(442 letters)
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc,
magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB:
2bz0_A
Length = 196
Score = 368 bits (946), Expect = e-128
Identities = 93/192 (48%), Positives = 121/192 (63%), Gaps = 1/192 (0%)
Query: 220 VDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGS 279
+ R + A++PT WG F + + G +H+A+V GDI +L RVHSECLTGD S
Sbjct: 3 LKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFS 62
Query: 280 ARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEEL 339
RCDCG QL A+ QI GRG+L+Y R EGR IGL +K+RAY LQD G DTVEAN +L
Sbjct: 63 LRCDCGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQL 121
Query: 340 GLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKR 399
G D R++ + A M + LGV ++L+TNNP K L G+ + RVPLI N+
Sbjct: 122 GFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEH 181
Query: 400 YLETKRAKMGHI 411
YL+TK KMGH+
Sbjct: 182 YLDTKAEKMGHL 193
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
riboflavine biosynthesis, skeletal rearrangement,
antimicrobial target; 1.40A {Escherichia coli} SCOP:
d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Length = 217
Score = 349 bits (899), Expect = e-121
Identities = 98/191 (51%), Positives = 133/191 (69%), Gaps = 2/191 (1%)
Query: 30 FVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQK 89
V+V+DDEDRENEGD+I A+ T E MA ++HG+GIVC+ + + ++LDLP+MV
Sbjct: 28 GVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVEN- 86
Query: 90 ENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREG 149
N T FTVT++A G TTGVSA DR TTV + +KP D NRPGH+FPL+ + G
Sbjct: 87 -NTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAG 145
Query: 150 GVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADL 209
GVL R GHTEA++DL LAGF PA VLCE+ +DDG+MAR P+ EFA + N+ +++I DL
Sbjct: 146 GVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDL 205
Query: 210 IRYRRKRDKLV 220
+ YR+ ++
Sbjct: 206 VAYRQAHERKA 216
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin
biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase,
synthetic gene, ISO; 1.60A {Candida albicans} SCOP:
d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Length = 204
Score = 345 bits (887), Expect = e-119
Identities = 97/187 (51%), Positives = 130/187 (69%), Gaps = 3/187 (1%)
Query: 30 FVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQK 89
F++V+DDEDRENEGDLIMAA+L T E MAF+V++ +G VCV + E +L+LP M+A
Sbjct: 20 FLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLA-- 77
Query: 90 ENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREG 149
++ TA+T+T D GTTTG+SA DRA T +LA+ +SKP DF +PGHI PL+ G
Sbjct: 78 NRSDRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPG 137
Query: 150 GVLKRAGHTEASVDLAVLAGFDPAAVLCEVV-DDDGSMARLPKLREFAKRENLKIISIAD 208
+ KR GHTEA+V L+ LAG PA V+CE+V D+DG M RL +F K+ +KII+I
Sbjct: 138 LLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIININQ 197
Query: 209 LIRYRRK 215
L+ Y K
Sbjct: 198 LVEYISK 204
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A
{Mycobacterium tuberculosis} PDB: 3mgz_A 3mk5_A
Length = 206
Score = 344 bits (885), Expect = e-119
Identities = 103/190 (54%), Positives = 135/190 (71%), Gaps = 4/190 (2%)
Query: 30 FVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQK 89
V+V+DDEDRENEGDLI AA+ ATPE +AF+V++ +G +CV + G +RL L M A
Sbjct: 19 AVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYA-- 76
Query: 90 ENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREG 149
N +K TA+TVTVDA++G TG+SA DRATT+ LA S DF RPGH+ PL+ ++G
Sbjct: 77 VNQDKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDG 136
Query: 150 GVLKRAGHTEASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREFAKRENLKIISIA 207
GVL+R GHTEA+VDLA +AG PA +CE+V D+GSMA +LR FA L +I+IA
Sbjct: 137 GVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALITIA 196
Query: 208 DLIRYRRKRD 217
DLI +RRK +
Sbjct: 197 DLIEWRRKHE 206
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin
biosynthesi antimicrobial target, structure-based
design, isomerase; 0.98A {Magnaporthe grisea} SCOP:
d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Length = 233
Score = 344 bits (884), Expect = e-118
Identities = 93/209 (44%), Positives = 126/209 (60%), Gaps = 14/209 (6%)
Query: 30 FVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQK 89
FVVV+DD RENE DLI+AA+ T E MAF+V+H +G++C + E LDLP MV
Sbjct: 27 FVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLPQMVT-- 84
Query: 90 ENDEKLCTAFTVTVDAKH-GTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYRE 148
N + TA+TV+VDA+H TTTG+SA DRA LA+ D++P F RPGH+FPL+
Sbjct: 85 HNADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVA 144
Query: 149 GGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDG-----------SMARLPKLREFAK 197
GGV R GHTEA V+L LAG P AV+ E+VDD M R + FA+
Sbjct: 145 GGVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRAAPGMLRGDECVAFAR 204
Query: 198 RENLKIISIADLIRYRRKRDKLVDRSSAA 226
R LK+ +I D+I + K + ++ + +
Sbjct: 205 RWGLKVCTIEDMIAHVEKTEGKLETNGSG 233
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A
{Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB:
1pvy_A* 1pvw_A
Length = 227
Score = 313 bits (804), Expect = e-106
Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 23/210 (10%)
Query: 30 FVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQK 89
++V D ++RE E D+++A+Q TPE + + K G++C ++ + +L +P MV
Sbjct: 16 IILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDIL 75
Query: 90 E----------------NDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLAS------ 127
E ++F++T++ T TG++ DRA T+ LA
Sbjct: 76 EFASQKFKVLRELYPNDIPYDEKSSFSITINH-RKTFTGITDNDRAFTIKKLAELVKEGR 134
Query: 128 RDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMA 187
+ +F PG + L+ EG V R GHTE +V LA LA P +CE++ DDG+
Sbjct: 135 FNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVPITTICEMMGDDGNAM 194
Query: 188 RLPKLREFAKRENLKIISIADLIRYRRKRD 217
+ + +A++ NL +S ++I Y +
Sbjct: 195 SKNETKRYAEKHNLIYLSGEEIINYYLDKY 224
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 2e-05
Identities = 58/455 (12%), Positives = 120/455 (26%), Gaps = 135/455 (29%)
Query: 5 LIWIALQKVFLLSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHG 64
L W L K +E + V++ R N +M+ + + +
Sbjct: 67 LFWTLLSK-------------QEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTR-- 110
Query: 65 TGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFT-------VTVDAKHGTT-TGVSAR 116
I D + V++ + KL A V + G +G
Sbjct: 111 MYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQALLELRPAKNVLI---DGVLGSG---- 162
Query: 117 DRATTVLTLAS-RDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAV 175
T + L K IF L + + + +
Sbjct: 163 ---KTWVALDVCLSYKVQCKM-DFKIFWLNL---------KNCNSPETV-----LEMLQK 204
Query: 176 LCEVVDDDGS-----MARLPKLREFAKRENLKIISIADLIRYRRKRDKLV---DRSSAAR 227
L +D + + + + + E + L++ + + L+ + +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAE------LRRLLKSKPYENCLLVLLNVQN--- 255
Query: 228 IPTMWGPFTAYC-------YRSILDGI-----EHIAMVKGDIGDGQDILVRVHSECLTGD 275
W F C ++ + D + HI++ + D + + + L
Sbjct: 256 -AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 276 IFGSARCDC-GDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVE 334
R + L++ I + +R N + D +
Sbjct: 315 PQDLPREVLTTNPRRLSI--IAES-------IR---------DGLATWDNWKHVNCDKLT 356
Query: 335 ANEELGL----PVDSREYGIGAQMLRDLGV---------RTMKLMTNNPSKYVGLKGYGL 381
E L P + R+ L V + L+ + K
Sbjct: 357 TIIESSLNVLEPAEYRKM------FDRLSVFPPSAHIPTILLSLIWFDVIKSD------- 403
Query: 382 AVAGRVPLITPIKKENKRYLETKRAKMG--HIYGL 414
V ++ + K +K L K+ K I +
Sbjct: 404 -----VMVV--VNKLHKYSLVEKQPKESTISIPSI 431
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 5e-05
Identities = 72/457 (15%), Positives = 138/457 (30%), Gaps = 142/457 (31%)
Query: 6 IWIA---LQKVFLLS-PRPLKTFAKER-------L------FVVVVDDEDRENEGDLIMA 48
+ LQ+ F P P + FA + L +V + + + + D ++
Sbjct: 26 SFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN 85
Query: 49 AQLATPEAMAFIVKHGTGI--VCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAK 106
L E ++ G I + + E+ D L+ ++ L + + A+
Sbjct: 86 LCLTEFEN-CYL--EGNDIHALAAKLLQEN----DTTLVKTKE-----LIKNY---ITAR 130
Query: 107 HGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVD-LA 165
++ + L A + IF GG G+T+ + L
Sbjct: 131 I--MAKRPFDKKSNSALFRAVGEGNAQLVA----IF------GG----QGNTDDYFEELR 174
Query: 166 VLAGFD-PAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIA----DLIRYRRKRDKLV 220
L + ++ +++ A L E R L + +++ +
Sbjct: 175 DL--YQTYHVLVGDLIK---FSAET--LSELI-RTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 221 DRSSAARIPTMWGP------FTAYCYRSILDGI---EHIAMVKGDIGDGQDILV-RVHSE 270
D+ IP P Y + L G E + +KG G Q ++ +E
Sbjct: 227 DKDYLLSIPISC-PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 271 CLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVY--LRGHEGRGIGLGHKLRAYNLQDD 328
+ + F + I VL + +R +E L L+
Sbjct: 286 TDSWESF----------FVSVRKAIT-----VLFFIGVRCYEAYPN---TSLPPSILE-- 325
Query: 329 GRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVP 388
D++E NE G+P + M L + L +
Sbjct: 326 --DSLENNE--GVP---------SPM---LSIS-------------NLT--------QEQ 348
Query: 389 LITPIKKENKRYLETKRAKMGHIY-GLESNGRLTNLI 424
+ + K N +L + + L NG NL+
Sbjct: 349 VQDYVNKTNS-HLPAGK----QVEISL-VNGA-KNLV 378
Score = 43.5 bits (102), Expect = 1e-04
Identities = 59/378 (15%), Positives = 109/378 (28%), Gaps = 171/378 (45%)
Query: 9 ALQKVFLLSPRPLKTFAKERLFVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIV 68
A+ +F + R + + L +++D NEG P M
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG---------VPSPM----------- 338
Query: 69 CVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDA-KHGTTTGVSARDRATTVLTLAS 127
+S+ E++ + + A K V ++L
Sbjct: 339 -LSISNLTQEQV------------QDYVNKTNSHLPAGKQ-----VE--------ISL-- 370
Query: 128 RDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEV-VDDDGSM 186
N ++ V+ +G ++ L G + L +
Sbjct: 371 -------VNGAKNL---------VV--SGPPQS------LYGLNLT--LRKAKAPSGLDQ 404
Query: 187 ARLPKLREFAKRENLKI------ISI----------ADLIRYRRKRDKLVDRSSAARIPT 230
+R+P F++R+ LK ++ +DLI ++ + + +IP
Sbjct: 405 SRIP----FSERK-LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP- 458
Query: 231 MWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLAL 290
V D DG D+ RV S ++ I DC +
Sbjct: 459 ----------------------VY-DTFDGSDL--RVLSGSISERI-----VDC-----I 483
Query: 291 AMQQI--EAA-----------------GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRD 331
+ E G GVL + R +G G+ + + A
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVLTH-RNKDGTGVRV---IVA--------G 531
Query: 332 TVEANEELGLPVDSREYG 349
T++ N P D +YG
Sbjct: 532 TLDIN-----PDD--DYG 542
Score = 39.3 bits (91), Expect = 0.003
Identities = 51/307 (16%), Positives = 89/307 (28%), Gaps = 92/307 (29%)
Query: 184 GS----M----------ARLPKLREFAK---RENLKIISIADLIRYRRKRDKLVDRSSAA 226
GS M A+ + A ++ SI D++ +
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQ--DVWNRADNHFKDTYGF-SILDIVINNPVNLTIH------ 1675
Query: 227 RIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVH---SECLTGDIFGSARCD 283
F + I + + AM+ I DG+ ++ +E T F S +
Sbjct: 1676 --------FGGEKGKRIREN--YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 284 CGD----QLAL------AMQQIEAAGRGVL-VYLRGHEGRGIG----LGHKLRAYNLQDD 328
Q AL A + +++ G GH +G L +++
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS---LGEYAALASLADVMSIES- 1781
Query: 329 GRDTVEANEELGLPVDSREYGIGAQ--MLRDLGVRTMKLMTN-NPSKYVGLKGYGLAVAG 385
VE V R G+ Q + RD R+ M NP + V +
Sbjct: 1782 ---LVEV-------VFYR--GMTMQVAVPRDELGRSNYGMIAINPGR-VAA---SFSQEA 1825
Query: 386 RVPLITPIKKENKRYLETKRAKM----------GHIYGLESNGRLTNLINGNGKPSIKSS 435
++ + K +E G + L+ +TN++N I
Sbjct: 1826 LQYVVERVGKRTGWLVEI--VNYNVENQQYVAAGDLRALD---TVTNVLNFIKLQKIDII 1880
Query: 436 SDTVSDS 442
S S
Sbjct: 1881 ELQKSLS 1887
Score = 33.9 bits (77), Expect = 0.14
Identities = 55/310 (17%), Positives = 91/310 (29%), Gaps = 129/310 (41%)
Query: 25 AKERLFVVVVDDED---RENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLD 81
A++ V + D ++ G I+ IV + + + GE +R+
Sbjct: 1642 AQD-----VWNRADNHFKDTYGFSILD-----------IVINNPVNLTIHFGGEKGKRI- 1684
Query: 82 LPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNR---- 137
+EN + F VD K T + +T T S G +
Sbjct: 1685 -------RENYSAMI--FETIVDGKLKTEKIFKEINEHSTSYTFRSEK---GLLSATQFT 1732
Query: 138 -PGHIFPLKY------REGGVLKR----AGHT--E--ASVDLAVLAGFDPAAVLCEVVDD 182
P + ++ + G++ AGH+ E A LA LA
Sbjct: 1733 QPA-LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA---LASLAD------------- 1775
Query: 183 DGSMARLPKLREFAKRENLKIISIADLIR---YR-RKRDKLVDRSSAARIPTMWGPFTAY 238
++SI L+ YR V R R + Y
Sbjct: 1776 --------------------VMSIESLVEVVFYRGMTMQVAVPRDELGR--------SNY 1807
Query: 239 CYRSILDGIEHIAMVKGDIGDG------QDILVRVHSECLTGDIFGSARCDCGDQLA--- 289
G+ IA+ G + Q ++ RV TG + ++
Sbjct: 1808 -------GM--IAINPGRVAASFSQEALQYVVERVGKR--TGWL-----V----EIVNYN 1847
Query: 290 LAMQQIEAAG 299
+ QQ AAG
Sbjct: 1848 VENQQYVAAG 1857
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase;
2.50A {Porcine transmissible gastroenteritiscoronavirus}
Length = 211
Score = 30.1 bits (67), Expect = 1.1
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 234 PFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCG 285
F CY + + +G GD + +L + ++ T I +A+C CG
Sbjct: 53 DFVNLCYAAT-------TLARGHSGDAEYLLELMLNDYSTAKIVLAAKCGCG 97
>2r5v_A PCZA361.1; dioxygenase, non-heme iron, vancomycin, oxidoreductase;
HET: HHH; 2.30A {Amycolatopsis orientalis}
Length = 357
Score = 29.8 bits (66), Expect = 1.9
Identities = 22/125 (17%), Positives = 34/125 (27%), Gaps = 9/125 (7%)
Query: 55 EAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVS 114
A A++ HG G+ ++M D+ A + A T +
Sbjct: 63 PAAAYLQTHGDGVADIAMATSDVAA-------AYEAAVRAGAEAVRAPGQHSEAAVTTAT 115
Query: 115 ARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAG-FDPA 173
V TL RD + PG + G + + AG P
Sbjct: 116 IGGFGDVVHTLIQRDGTSAEL-PPGFTGSMDVTNHGKGDVDLLGIDHFAICLNAGDLGPT 174
Query: 174 AVLCE 178
E
Sbjct: 175 VEYYE 179
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 3.9
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 182 DDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARI 228
D S + RE AK++ + + +R+ +++ RI
Sbjct: 102 DAASKVMEQEWREKAKKD------LEE--WNQRQSEQVEKNKINNRI 140
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 28.3 bits (64), Expect = 5.5
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 19/50 (38%)
Query: 120 TTVLT--LASRDSKPGDFNRPGHIFPL--KYRE---------GGVLKRAG 156
T V+ ++ P F PL YR+ L+R
Sbjct: 39 TAVMVTAVSKTKPSPSQF------MPLVVDYRQKAAAAGRIPTNYLRREV 82
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural
genomics of infectious diseases (csgid national
institute of allergy and infectious diseases; 1.70A
{Streptococcus pneumoniae}
Length = 265
Score = 27.7 bits (62), Expect = 8.6
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 82 LPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHI 141
PL+ + + TV V G+ TG+S + + ++ D +
Sbjct: 15 QPLVEVAADEFGTIHVGKTVNVQG-GGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASAL 73
Query: 142 FPLK 145
K
Sbjct: 74 VDHK 77
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET:
ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A*
3nu8_A* 3nu7_A* 3nub_A*
Length = 367
Score = 27.5 bits (62), Expect = 8.7
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 184 GSMARLPKLREFAKRENLKII 204
G A + A + + +I
Sbjct: 134 GQCADFDAINAIASKYGIPVI 154
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter,
phosphate transport receptor; HET: MSE; 1.55A
{Lactobacillus brevis}
Length = 264
Score = 27.3 bits (61), Expect = 9.1
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 82 LPLMVAQKENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKP 132
PL+ A E + V GT TG+S + + +
Sbjct: 15 QPLVEAAGEQYTGEHLGTFINVQG-GGTGTGLSQIQEGAVQIGNSDLFAGE 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.399
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,022,310
Number of extensions: 465657
Number of successful extensions: 1239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1218
Number of HSP's successfully gapped: 26
Length of query: 442
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 345
Effective length of database: 3,993,456
Effective search space: 1377742320
Effective search space used: 1377742320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)