RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013465
(442 letters)
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Escherichia coli [TaxId:
562]}
Length = 209
Score = 219 bits (559), Expect = 2e-70
Identities = 97/188 (51%), Positives = 132/188 (70%), Gaps = 2/188 (1%)
Query: 30 FVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQK 89
V+V+DDEDRENEGD+I A+ T E MA ++HG+GIVC+ + + ++LDLP+M +
Sbjct: 24 GVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMM--VE 81
Query: 90 ENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREG 149
N T FTVT++A G TTGVSA DR TTV + +KP D NRPGH+FPL+ + G
Sbjct: 82 NNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAG 141
Query: 150 GVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADL 209
GVL R GHTEA++DL LAGF PA VLCE+ +DDG+MAR P+ EFA + N+ +++I DL
Sbjct: 142 GVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDL 201
Query: 210 IRYRRKRD 217
+ YR+ +
Sbjct: 202 VAYRQAHE 209
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Archaeon
Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 219
Score = 216 bits (552), Expect = 4e-69
Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 23/205 (11%)
Query: 30 FVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQK 89
++V D ++RE E D+++A+Q TPE + + K G++C ++ + +L +P MV
Sbjct: 15 IILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDIL 74
Query: 90 E----------------NDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLAS------ 127
E ++F++T++ + T TG++ DRA T+ LA
Sbjct: 75 EFASQKFKVLRELYPNDIPYDEKSSFSITINHR-KTFTGITDNDRAFTIKKLAELVKEGR 133
Query: 128 RDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDGSMA 187
+ +F PG + L+ EG V R GHTE +V LA LA P +CE++ DDG+
Sbjct: 134 FNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVPITTICEMMGDDGNAM 193
Query: 188 RLPKLREFAKRENLKIISIADLIRY 212
+ + +A++ NL +S ++I Y
Sbjct: 194 SKNETKRYAEKHNLIYLSGEEIINY 218
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Magnaporthe grisea
[TaxId: 148305]}
Length = 216
Score = 210 bits (535), Expect = 1e-66
Identities = 85/202 (42%), Positives = 113/202 (55%), Gaps = 12/202 (5%)
Query: 30 FVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQK 89
FVVV+DD RENE DLI+AA+ T E MAF+V+H +G++C + E LDLP MV
Sbjct: 16 FVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLPQMVTHN 75
Query: 90 ENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREG 149
+ +V TTTG+SA DRA LA+ D++P F RPGH+FPL+ G
Sbjct: 76 ADPRGTAYTVSVDA-EHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAG 134
Query: 150 GVLKRAGHTEASVDLAVLAGFDPAAVLCEVVDDDG-----------SMARLPKLREFAKR 198
GV R GHTEA V+L LAG P AV+ E+VDD M R + FA+R
Sbjct: 135 GVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARR 194
Query: 199 ENLKIISIADLIRYRRKRDKLV 220
LK+ +I D+I + K + +
Sbjct: 195 WGLKVCTIEDMIAHVEKTEGKL 216
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Candida albicans [TaxId:
5476]}
Length = 202
Score = 207 bits (527), Expect = 1e-65
Identities = 97/187 (51%), Positives = 130/187 (69%), Gaps = 3/187 (1%)
Query: 30 FVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQK 89
F++V+DDEDRENEGDLIMAA+L T E MAF+V++ +G VCV + E +L+LP M+A
Sbjct: 18 FLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLAN- 76
Query: 90 ENDEKLCTAFTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREG 149
++ TA+T+T D GTTTG+SA DRA T +LA+ +SKP DF +PGHI PL+ G
Sbjct: 77 -RSDRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPG 135
Query: 150 GVLKRAGHTEASVDLAVLAGFDPAAVLCEVV-DDDGSMARLPKLREFAKRENLKIISIAD 208
+ KR GHTEA+V L+ LAG PA V+CE+V D+DG M RL +F K+ +KII+I
Sbjct: 136 LLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIININQ 195
Query: 209 LIRYRRK 215
L+ Y K
Sbjct: 196 LVEYISK 202
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA
{Escherichia coli [TaxId: 562]}
Length = 174
Score = 188 bits (479), Expect = 6e-59
Identities = 84/171 (49%), Positives = 109/171 (63%), Gaps = 1/171 (0%)
Query: 220 VDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGS 279
+ R + A++PT WG F + + G +H+A+V GDI +L RVHSECLTGD S
Sbjct: 3 LKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFS 62
Query: 280 ARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEEL 339
RCDCG QL A+ QI GRG+L+Y R EGR IGL +K+RAY LQD G DTVEAN +L
Sbjct: 63 LRCDCGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQL 121
Query: 340 GLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLI 390
G D R++ + A M + LGV ++L+TNNP K L G+ + RVPLI
Sbjct: 122 GFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLI 172
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 31.7 bits (71), Expect = 0.18
Identities = 32/226 (14%), Positives = 58/226 (25%), Gaps = 30/226 (13%)
Query: 186 MARLPKLREFAKRENLKII-------SIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAY 238
MA + + E A +KI A I+ + + V +
Sbjct: 194 MANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTM 253
Query: 239 CYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAA 298
+ + D V G A D A+A+ EA
Sbjct: 254 SGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDM---EAMAIGLREAM 310
Query: 299 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSRE----------- 347
+ + + L++ G VE + +D+R
Sbjct: 311 QYEYIEHRVKQ--------VRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFP 362
Query: 348 -YGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITP 392
+ A + + GVR+M+ + + V L P
Sbjct: 363 AQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIP 408
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli
[TaxId: 562]}
Length = 385
Score = 31.1 bits (69), Expect = 0.28
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 316 LGHKLRAYNLQDDGRDTVEA----NEELGLPVDSREYGIGAQMLRDLGVRTMK--LMTNN 369
+G K+ +L++ VEA N ++G+P R+ G+ + + L + N
Sbjct: 306 MGVKVEGMSLEEARNAAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAALDDVCTGGN 365
Query: 370 P 370
P
Sbjct: 366 P 366
>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima
[TaxId: 2336]}
Length = 364
Score = 28.4 bits (62), Expect = 1.6
Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 10/153 (6%)
Query: 225 AARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDC 284
R+ +M A L +E+ + K + + + G
Sbjct: 190 TGRLGSMTAYALARLCYETL--LEYGVLAKRSVEEKSVTPALEKIVEANTLLSGLGFESG 247
Query: 285 GDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEA-NEELGLPV 343
G A A+ YL G IG+ L + + V + EE+GLP
Sbjct: 248 GLAAAHAIHNGLTVLENTHKYLHGE-KVAIGVLASLFLTDKPRKMIEEVYSFCEEVGLPT 306
Query: 344 DSREYGIGA---QMLRDLGVRTMK---LMTNNP 370
E G+ + L + + + N P
Sbjct: 307 TLAEIGLDGVSDEDLMKVAEKACDKNETIHNEP 339
>d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia
coli [TaxId: 562]}
Length = 390
Score = 27.7 bits (60), Expect = 3.1
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 336 NEELGLPVDSREYGIGAQMLRDLGVRTMK---LMTNNP 370
E+LG+P +YG+ + L + +
Sbjct: 337 FEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGEN 374
>d1p5dx2 c.84.1.1 (X:155-258) Phosphomannomutase/phosphoglucomutase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 104
Score = 26.2 bits (57), Expect = 3.3
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Query: 99 FTVTVDAKHGTTTGVSARDRATTVLTLASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHT 158
V VD +G ++ + ++ + D N P H E LK
Sbjct: 19 MKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEV-DGNFPNHHPDPGKPE--NLKDLIAK 75
Query: 159 EASVDLAVLAGFDPAAVLCEVVDDDGSM 186
+ + + FD VV + G++
Sbjct: 76 VKAENADLGLAFDGDGDRVGVVTNTGTI 103
>d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId:
562]}
Length = 89
Score = 25.1 bits (55), Expect = 5.8
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 101 VTVDAKHGTTTGVSARDRATTVLTLASRDSK 131
+VDA G T TT +++ S D++
Sbjct: 51 ASVDASSGQVTLKEK---GTTTISVISSDNQ 78
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A
(TM0820) {Thermotoga maritima [TaxId: 2336]}
Length = 398
Score = 26.6 bits (57), Expect = 7.9
Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 321 RAYNLQDDGRDTVEA--------NEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNP 370
+ + + +G + + +++G PV ++ GI + + + M L+ N
Sbjct: 314 KIFGFEGEGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEKNL 371
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.399
Gapped
Lambda K H
0.267 0.0633 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,640,106
Number of extensions: 79456
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 17
Length of query: 442
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 354
Effective length of database: 1,199,356
Effective search space: 424572024
Effective search space used: 424572024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)