BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013466
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/391 (83%), Positives = 359/391 (91%), Gaps = 9/391 (2%)
Query: 52 SVNQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANH 111
S +Q+QAP+ P + +C+GVFCLTYDLKAEEETKSWKK++N+AVSGAAGMI+NH
Sbjct: 4 SSDQIQAPL------PAKQKPECFGVFCLTYDLKAEEETKSWKKIINVAVSGAAGMISNH 57
Query: 112 LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171
LLFKLA+GEV GPDQPI+LKLLGSERS ALEGVAMELEDSL+PLLR+V IGI+PYE+F+
Sbjct: 58 LLFKLASGEVFGPDQPISLKLLGSERSFAALEGVAMELEDSLYPLLRQVSIGIDPYEIFQ 117
Query: 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231
DAEWALLIGAKPRGPGMERA LLDINGQIFAEQGKALNAVAS NVKV+VVGNPCNTNALI
Sbjct: 118 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALI 177
Query: 232 CLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAR 291
CLKNAP+IP KNFHALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+
Sbjct: 178 CLKNAPNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAK 237
Query: 292 INGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTP 351
I+G+PV E+I+D KWLE+ FT +Q RGG+LIKKWGRSSAASTAVSIVDA++SLVTP
Sbjct: 238 IHGIPVTEVIRDRKWLEDEFTNMVQT---RGGVLIKKWGRSSAASTAVSIVDAIRSLVTP 294
Query: 352 TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411
TPEGDWFS+GVYTNGNPYGIAEDIVFSMPCRSKGDGDYE VKDVIFDDYL K+I K+E E
Sbjct: 295 TPEGDWFSTGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEFVKDVIFDDYLSKKIKKSEDE 354
Query: 412 LLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 442
LLAEKKCVAHLTGEGIA CDLPEDTMLPGEM
Sbjct: 355 LLAEKKCVAHLTGEGIAVCDLPEDTMLPGEM 385
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/370 (85%), Positives = 343/370 (92%), Gaps = 3/370 (0%)
Query: 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132
DC+GVFC TYDLKAE++TKSWKK+VNIAVSGAAGMI+NHLLFKLA+GEV G DQPIALKL
Sbjct: 9 DCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKL 68
Query: 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192
LGSERS QALEGVAMELEDSL+PLLREV IGI+PYE+FED +WALLIGAKPRGPGMERA
Sbjct: 69 LGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAA 128
Query: 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252
LLDINGQIFA+QGKALNAVAS+NVKV+VVGNPCNTNALICLKNAP IPAKNFHALTRLDE
Sbjct: 129 LLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDE 188
Query: 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFT 312
NRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKE+IK KWLEE FT
Sbjct: 189 NRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFT 248
Query: 313 ETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIA 372
T+QK RGG LI+KWGRSSAASTAVSI DA+KSLVTPTPEGDWFS+GVYT GNPYGIA
Sbjct: 249 ITVQK---RGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIA 305
Query: 373 EDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDL 432
EDIVFSMPCRSKGDGDYEL DV DD+L +RI K+E ELLAEKKCVAHLTGEG A+CD+
Sbjct: 306 EDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLAEKKCVAHLTGEGNAYCDV 365
Query: 433 PEDTMLPGEM 442
PEDTMLPGE+
Sbjct: 366 PEDTMLPGEV 375
>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZE|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
Length = 327
Score = 313 bits (801), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 169/329 (51%), Positives = 223/329 (67%), Gaps = 6/329 (1%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LLGSERS QALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLGSERSFQALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP + +NF A+TRLD NRAK QLA K G D++ M
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333
T+WGNHS+T PD +A ++G P E++ D +W E+ F T+ + RG +I+ G SS
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQ---RGAAIIQARGASS 237
Query: 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 393
AAS A + ++ ++ TPEGDW S V + G YGI E IV+S P +K DG Y +V+
Sbjct: 238 AASAANAAIEHIRDWALGTPEGDWVSMAVPSQGE-YGIPEGIVYSFPVTAK-DGAYRVVE 295
Query: 394 DVIFDDYLRKRIAKTEQELLAEKKCVAHL 422
+ +++ RKR+ T QELL E + V L
Sbjct: 296 GLEINEFARKRMEITAQELLDEMEQVKAL 324
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1IZ9|B Chain B, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1Y7T|A Chain A, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|1Y7T|B Chain B, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|A Chain A, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|B Chain B, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
Length = 327
Score = 300 bits (768), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 163/329 (49%), Positives = 221/329 (67%), Gaps = 6/329 (1%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP + +NF A+TRLD NRAK QLA K G D++ M
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333
T+WGNHS+T PD +A ++G P E++ D +W E+ F T+ + RG +I+ G SS
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQ---RGAAIIQARGASS 237
Query: 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 393
AAS A + ++ ++ TPEGDW S V + G YGI E IV+S P +K DG Y +V+
Sbjct: 238 AASAANAAIEHIRDWALGTPEGDWVSMAVPSQGE-YGIPEGIVYSFPVTAK-DGAYRVVE 295
Query: 394 DVIFDDYLRKRIAKTEQELLAEKKCVAHL 422
+ +++ RKR+ T QELL E + V L
Sbjct: 296 GLEINEFARKRMEITAQELLDEMEQVKAL 324
>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
pdb|1BMD|B Chain B, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
Length = 327
Score = 300 bits (767), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 163/329 (49%), Positives = 221/329 (67%), Gaps = 6/329 (1%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP + +NF A+TRLD NRAK QLA K G D++ M
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333
T+WGNHS+T PD +A ++G P E++ D +W E+ F T+ + RG +I+ G SS
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQ---RGAAIIQARGASS 237
Query: 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 393
AAS A + ++ ++ TPEGDW S V + G YGI E IV+S P +K DG Y +V+
Sbjct: 238 AASAANAAIEHIRDWALGTPEGDWVSMAVPSQGE-YGIPEGIVYSFPVTAK-DGAYRVVE 295
Query: 394 DVIFDDYLRKRIAKTEQELLAEKKCVAHL 422
+ +++ RKR+ T QELL E + V L
Sbjct: 296 GLEINEFARKRMEITAQELLDEMEQVKAL 324
>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
pdb|1BDM|B Chain B, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
Length = 327
Score = 297 bits (761), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 162/329 (49%), Positives = 220/329 (66%), Gaps = 6/329 (1%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP + +NF A+TRLD NRAK QLA K G D++ M
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333
T+WGNHS+ PD +A ++G P E++ D +W E+ F T+ + RG +I+ G SS
Sbjct: 182 TVWGNHSSIMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQ---RGAAIIQARGASS 237
Query: 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 393
AAS A + ++ ++ TPEGDW S V + G YGI E IV+S P +K DG Y +V+
Sbjct: 238 AASAANAAIEHIRDWALGTPEGDWVSMAVPSQGE-YGIPEGIVYSFPVTAK-DGAYRVVE 295
Query: 394 DVIFDDYLRKRIAKTEQELLAEKKCVAHL 422
+ +++ RKR+ T QELL E + V L
Sbjct: 296 GLEINEFARKRMEITAQELLDEMEQVKAL 324
>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8U|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8V|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
Length = 329
Score = 277 bits (709), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 154/333 (46%), Positives = 219/333 (65%), Gaps = 8/333 (2%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELED 151
K + +AV+GAAG I LLF++A G++LG DQP+ L+LL +E++ +AL+GV ME++D
Sbjct: 3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDD 62
Query: 152 SLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
FPLL + +P F+DA+ ALL+GA+PRGPGMER LL+ N QIF QGKA++AV
Sbjct: 63 CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
ASRN+KV+VVGNP NTNA I +K+APS+PAKNF A+ RLD NRA Q+A K G +
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIE 182
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331
+ +WGNHS T D+ A+I+G VK++I D W + F T+ K RG +I G
Sbjct: 183 KLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGK---RGAAIIDARGV 239
Query: 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEL 391
SSAAS A + +D + V T G W + G+ ++G+ YGI E ++F P ++ +G+Y++
Sbjct: 240 SSAASAANAAIDHIHDWVLGT-AGKWTTMGIPSDGS-YGIPEGVIFGFPVTTE-NGEYKI 296
Query: 392 VKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTG 424
V+ + D + ++RI T ELL E+ V HL G
Sbjct: 297 VQGLSIDAFSQERINVTLNELLEEQNGVQHLLG 329
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
pdb|4MDH|B Chain B, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
Length = 334
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 146/326 (44%), Positives = 207/326 (63%), Gaps = 10/326 (3%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
L++V I + E+ F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++
Sbjct: 65 LKDV-IATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ I
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 183
Query: 276 WGNHSTTQVPDFLNARI----NGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331
WGNHS+TQ PD +A++ + V E +KD WL+ F T+Q+ RG +IK
Sbjct: 184 WGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQ---RGAAVIKARKL 240
Query: 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEL 391
SSA S A +I D ++ + TPEG++ S G+ ++GN YG+ +D+++S P K D +++
Sbjct: 241 SSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIK-DKTWKI 299
Query: 392 VKDVIFDDYLRKRIAKTEQELLAEKK 417
V+ + +D+ R+++ T +EL EK+
Sbjct: 300 VEGLPINDFSREKMDLTAKELAEEKE 325
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
Length = 333
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 146/326 (44%), Positives = 207/326 (63%), Gaps = 10/326 (3%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 63
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
L++V I + E+ F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++
Sbjct: 64 LKDV-IATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 122
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ I
Sbjct: 123 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 182
Query: 276 WGNHSTTQVPDFLNARI----NGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331
WGNHS+TQ PD +A++ + V E +KD WL+ F T+Q+ RG +IK
Sbjct: 183 WGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQ---RGAAVIKARKL 239
Query: 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEL 391
SSA S A +I D ++ + TPEG++ S G+ ++GN YG+ +D+++S P K D +++
Sbjct: 240 SSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIK-DKTWKI 298
Query: 392 VKDVIFDDYLRKRIAKTEQELLAEKK 417
V+ + +D+ R+++ T +EL EK+
Sbjct: 299 VEGLPINDFSREKMDLTAKELAEEKE 324
>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|C Chain C, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|D Chain D, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
Length = 331
Score = 261 bits (668), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 150/324 (46%), Positives = 209/324 (64%), Gaps = 6/324 (1%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV+GAAG IA LLF++A G++LG DQP+ L+LL ++ A++GV MEL+D FPLL
Sbjct: 12 VAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLA 71
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
V I +P F+DA+ ALL+GA+PR GMER LL N +IF QG ALN VASR+VKV
Sbjct: 72 GVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKV 131
Query: 219 IVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGN 278
+VVGNP NTNA I +K+AP +P KNF A+ RLD NRA QLA K+G + + +WGN
Sbjct: 132 LVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGN 191
Query: 279 HSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTA 338
HS T PDF A G + ++I D W + F T+ K RG +I+ G SSAAS A
Sbjct: 192 HSPTMYPDFRFATAEGESLLKLINDDVWNRDTFIPTVGK---RGAAIIEARGLSSAASAA 248
Query: 339 VSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFD 398
+ +D ++ V T G W + G+ ++G+ YGI EDI++ +P + +G+Y+ V+ + D
Sbjct: 249 NAAIDHVRDWVLGT-NGKWVTMGIPSDGS-YGIPEDIIYGVPVICE-NGEYKRVEGLEID 305
Query: 399 DYLRKRIAKTEQELLAEKKCVAHL 422
+ R+++ T ELL E+ VAHL
Sbjct: 306 AFSREKMDGTLAELLEERDGVAHL 329
>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4H7P|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4I1I|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
pdb|4I1I|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
Length = 345
Score = 247 bits (631), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 148/334 (44%), Positives = 207/334 (61%), Gaps = 6/334 (1%)
Query: 84 LKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE 143
L+A+ + V +AV+GAAG I L+ +A G +LGP P+ L+LL E +L+AL
Sbjct: 12 LEAQTQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALA 71
Query: 144 GVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAE 203
GV ELED FPLL +V + +P F+ A++ GA PR GMER LL++N +IF E
Sbjct: 72 GVEAELEDCAFPLLDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKE 131
Query: 204 QGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS-IPAKNFHALTRLDENRAKCQLALK 262
QG+A+ AVA+ + +V+VVGNP NTNALI LK+A + ++ A+TRLD NRA LA K
Sbjct: 132 QGEAIAAVAASDCRVVVVGNPANTNALILLKSAQGKLNPRHVTAMTRLDHNRALSLLARK 191
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRG 322
AGV +V N+ IWGNHS+TQVPD +A I P +E IKD L++ F +Q VR RG
Sbjct: 192 AGVPVSQVRNVIIWGNHSSTQVPDTDSAVIGTTPAREAIKDDA-LDDDF---VQVVRGRG 247
Query: 323 GLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCR 382
+I+ G SSA S A + VD + + TPEG + S GVY++ NPYG+ ++FS PC
Sbjct: 248 AEIIQLRGLSSAMSAAKAAVDHVHDWIHGTPEGVYVSMGVYSDENPYGVPSGLIFSFPCT 307
Query: 383 SKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEK 416
G++ +V + D ++R+A T EL E+
Sbjct: 308 CHA-GEWTVVSGKLNGDLGKQRLASTIAELQEER 340
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 131/293 (44%), Gaps = 22/293 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPD----QPIALKLLGSERSLQALEGVAMELEDSLF 154
+ + GAAGMI +++ + AA L P+ P A+ LEGVA E+ F
Sbjct: 11 LTIVGAAGMIGSNMA-QTAAMMRLTPNLCLYDPFAV----------GLEGVAEEIRHCGF 59
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
L + + E DA++ + G PR GM R LL N +I A+ GK + +
Sbjct: 60 EGLN-LTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPD 118
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
VI++ NP + L+ L + P++ L LD R + +LA G+ V+N
Sbjct: 119 CKHVIIIFNPADITGLVTLIYSGLKPSQ-VTTLAGLDSTRLQSELAKHFGIKQSLVTNTR 177
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSA 334
+G H A++NG P+ ++I K E + E Q+V G +IK GRSS
Sbjct: 178 TYGGHGEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRSSF 237
Query: 335 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDG 387
S + ++ +++ + E + +G Y N + E I+ +M DG
Sbjct: 238 QSPSYVSIEMIRAAM--GGEAFRWPAGCYVNVPGF---EHIMMAMETTITKDG 285
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 132/299 (44%), Gaps = 18/299 (6%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + + GA+G + + L A E D L L+G E S+ LEG+ ++ D+L
Sbjct: 1 MKVTIIGASGRVGSATAL-LLAKEPFMKD----LVLIGREHSINKLEGLREDIYDALAGT 55
Query: 157 LREVKIGINPYE---LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
+ I + E + ++++ ++ PR GM R L N +I + K + +
Sbjct: 56 RSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC- 114
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
+ K+ V+ NP + L ++ + F T LD R K +A GV D+V
Sbjct: 115 -DTKIFVITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRT- 172
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333
I G H + VP I G+P++ K ++ E E I+ V+ +G +I+ G S
Sbjct: 173 RIIGEHGDSMVPLLSATSIGGIPIQ---KFERFKELPIDEIIEDVKTKGEQIIRLKG-GS 228
Query: 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELV 392
A +I++ ++ +V E + Y +G GI D+ +P + DG E+V
Sbjct: 229 EFGPAAAILNVVRCIV--NNEKRLLTLSAYVDGEFDGI-RDVCIGVPVKIGRDGIEEVV 284
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 9/210 (4%)
Query: 131 KLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRG 185
K LG +EGV A++L + + KI G N YE ++++ ++ PR
Sbjct: 36 KDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNYEYLQNSDVVIITAGVPRK 95
Query: 186 PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245
P M R+ LL +N +I + + N VI + NP + + K IPA
Sbjct: 96 PNMTRSDLLTVNAKIVGSVAENVGKYCP-NAFVICITNPLDA-MVYYFKEKSGIPANKVC 153
Query: 246 ALTR-LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH 304
++ LD R +C L+ GV VS + + G H +P + I G+ + + ++
Sbjct: 154 GMSGVLDSARFRCNLSRALGVKPSDVSAIVV-GGHGDEMIPLTSSVTIGGILLSDFVEQG 212
Query: 305 KWLEEGFTETIQKVRLRGGLLIKKWGRSSA 334
K E I+K GG +++ SA
Sbjct: 213 KITHSQINEIIKKTAFGGGEIVELLKTGSA 242
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 108/239 (45%), Gaps = 20/239 (8%)
Query: 122 LGPDQPIALKLLGSERSL-------QALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174
+G AL + G R + + EG A++L P R I Y + ++
Sbjct: 11 VGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGT-PFTRRANIYAGDYADLKGSD 69
Query: 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK 234
++ P+ PG R LL N ++ E + ++ A ++ VIVV NP + LK
Sbjct: 70 VVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSI-VIVVTNPVDVLTYFFLK 128
Query: 235 NAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING 294
+ P K F + T LD R + +A G F + ++ + G H ++VP + A I G
Sbjct: 129 ESGMDPRKVFGSGTVLDTARLRTLIAQHCG-FSPRSVHVYVIGEHGDSEVPVWSGAMIGG 187
Query: 295 LPVKEIIK-----DHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSL 348
+P++ + + D K LE F E ++ +I++ G + A A+++ D ++S+
Sbjct: 188 IPLQNMCQVCQKCDSKILEN-FAEKTKRAAYE---IIERKGATHYA-IALAVADIVESI 241
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 100/211 (47%), Gaps = 13/211 (6%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
+G A+++ +S L + K+ G N Y +++ ++ PR PGM R LL +N I
Sbjct: 39 QGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVVITAGLPRKPGMTREDLLSMNAGIV 98
Query: 202 AE-QGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQL 259
E G+ + S+N ++VV NP + + + + +P + + LD R + +
Sbjct: 99 REVTGRIME--HSKNPIIVVVSNPLDIMTHVAWQKS-GLPKERVIGMAGVLDSARFRSFI 155
Query: 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVR 319
A++ GV V+ + G H VP + G+PV ++I E E +++ R
Sbjct: 156 AMELGVSMQDVT-ACVLGGHGDAMVPVVKYTTVAGIPVADLIS-----AERIAELVERTR 209
Query: 320 LRGGLLIKKWGRSSA-ASTAVSIVDAMKSLV 349
G ++ + SA S A S+V+ ++S+V
Sbjct: 210 TGGAEIVNHLKQGSAFYSPATSVVEMVESIV 240
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 97/232 (41%), Gaps = 13/232 (5%)
Query: 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222
G N Y ED++ ++ PR PGM R LL N +I + S + +IVV
Sbjct: 60 GTNDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQF-VEGSPDSTIIVVA 118
Query: 223 NPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQLALKAGVFYDKVSNMTIWGNHST 281
NP + + + A P + LD R + +A + V V + + G H
Sbjct: 119 NPLDVMTYVAYE-ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQAL-LMGGHGD 176
Query: 282 TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSI 341
T VP + G+PV ++I D + E +++ + GG ++ G S+ + +
Sbjct: 177 TMVPLPRYTTVGGIPVPQLIDDAR-----IEEIVERTKGAGGEIVDLMGTSAWYAPGAAA 231
Query: 342 VDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 393
+ ++++ Y +G YG+ +D+ +P + G E+++
Sbjct: 232 AEMTEAILKDNKR--ILPCAAYCDGE-YGL-DDLFIGVPVKLGAGGVEEVIE 279
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|B Chain B, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|C Chain C, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|D Chain D, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
Length = 308
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 114/264 (43%), Gaps = 16/264 (6%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
+G A++L + L +++I G N YE ++ L+ R PGM R LL+ N
Sbjct: 37 QGEALDLAHAAAELGVDIRISGSNSYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTM 96
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRAKCQL 259
A+ + + A A ++ V++ NP + + K P F + LD R +
Sbjct: 97 ADLAEKIKAYA-KDAIVVITTNPVDAMTYVMYKKTGFPRERVIGFSGI--LDSARMAYYI 153
Query: 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVR 319
+ K GV + V N + G H P + + G+P++ ++ + +EE +ET+
Sbjct: 154 SQKLGVSFKSV-NAIVLGMHGQKMFPVPRLSSVGGVPLEHLMSKEE-IEEVVSETVNA-- 209
Query: 320 LRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSM 379
G + + G SS A +V ++++ + + +Y G YG DIV +
Sbjct: 210 --GAKITELRGYSSNYGPAAGLVLTVEAIKRDSKR--IYPYSLYLQGE-YGY-NDIVAEV 263
Query: 380 PCRSKGDGDYELVKDVIFDDYLRK 403
P G +++ + +D RK
Sbjct: 264 PAVIGKSGIERIIELPLTEDEKRK 287
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|B Chain B, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|C Chain C, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|D Chain D, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 321
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 91/229 (39%), Gaps = 11/229 (4%)
Query: 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222
G N Y+ E+++ ++ PR PG R LL IN ++ G+ + N VI +
Sbjct: 64 GTNDYKDLENSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKH-NCPNAFVICIT 122
Query: 223 NPCN--TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHS 280
NP + N L P K LD R + LA + V +V + G H
Sbjct: 123 NPLDIXVNXLQKFSGVPD--NKIVGXAGVLDSARFRTFLADELNVSVQQVQ-AYVXGGHG 179
Query: 281 TTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIK--KWGRSSAASTA 338
T VP + + G+ +++++K+ K +E + + R GG ++ K G + A A
Sbjct: 180 DTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALLKTGSAYYAPAA 239
Query: 339 VSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDG 387
I A L + YG+ ED+ +P +G
Sbjct: 240 AGIQXAESFL---KDKKXILPCAAKVKAGXYGLDEDLFVGVPTEISANG 285
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 110/252 (43%), Gaps = 10/252 (3%)
Query: 144 GVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAE 203
G AM++ L P + ++ + Y +D + ++ R PG R L N I E
Sbjct: 47 GEAMDINHGL-PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKE 105
Query: 204 QGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKA 263
+ + + V ++VV NP + + K + K + T LD R + L+ K
Sbjct: 106 VTQNIMKYYNHGV-ILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKL 164
Query: 264 GVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--WLEEGFTETIQKVRLR 321
GV V I G H +Q+P + I G + E I D K + EE + + V+
Sbjct: 165 GVDVKNVHGYII-GEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTA 223
Query: 322 GGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 381
G +IK G ++ AVSI +++L+ + + G NG YGI ED+ S+P
Sbjct: 224 GATIIKNKG-ATYYGIAVSINTIVETLL--KNQNTIRTVGTVING-MYGI-EDVAISLPS 278
Query: 382 RSKGDGDYELVK 393
+G E+++
Sbjct: 279 IVNSEGVQEVLQ 290
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 8/187 (4%)
Query: 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222
G N Y E A+ ++ PR PGM R LL IN ++ + G + A VI +
Sbjct: 66 GANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAF-VICIT 124
Query: 223 NPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQLALKAGVFYDKVSNMTIWGNHST 281
NP + + L+ +PA + LD R + L+ + V + V+ + + G H
Sbjct: 125 NPLDA-MVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVT-VFVLGGHGD 182
Query: 282 TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRG----GLLIKKWGRSSAAST 337
+ VP + + G+P+ +++K ++ + IQ+ R G GLL + A++
Sbjct: 183 SMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLLKTGSAFYAPAAS 242
Query: 338 AVSIVDA 344
A+ + ++
Sbjct: 243 AIQMAES 249
>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOV|B Chain B, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOW|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
pdb|1SOW|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
Length = 328
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 97/236 (41%), Gaps = 14/236 (5%)
Query: 165 NPYELFEDAEWALLIGAKPRGPGME-----RAGLLDINGQIFAEQGKALNAVASRNVKVI 219
N YE ++ ++ + PG R LL N +I E + + VI
Sbjct: 69 NQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAF-VI 127
Query: 220 VVGNPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQLALKAGVFYDKVSNMTIWGN 278
VV NP + + C A +P + LD R + +A + + + T+ G
Sbjct: 128 VVTNPLDC-MVKCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDI-QATVIGT 185
Query: 279 HSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSA-AST 337
H +P +NG P++E IK K E E +++ + GG +++ G+ SA +
Sbjct: 186 HGDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRLLGQGSAYYAP 245
Query: 338 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 393
A+S + ++ + E VY G YG+ D+ +P G G ++++
Sbjct: 246 ALSAITMAQAFL--KDEKRVLPCSVYCQGE-YGL-HDMFIGLPAVIGGGGIEQVIE 297
>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
pdb|3CZM|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
Length = 326
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 97/236 (41%), Gaps = 14/236 (5%)
Query: 165 NPYELFEDAEWALLIGAKPRGPGME-----RAGLLDINGQIFAEQGKALNAVASRNVKVI 219
N YE ++ ++ + PG R LL N +I E + + VI
Sbjct: 69 NQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAF-VI 127
Query: 220 VVGNPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQLALKAGVFYDKVSNMTIWGN 278
VV NP + + C A +P + LD R + +A + + + T+ G
Sbjct: 128 VVTNPLDC-MVKCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDI-QATVIGT 185
Query: 279 HSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSA-AST 337
H +P +NG P++E IK K E E +++ + GG +++ G+ SA +
Sbjct: 186 HGDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRLLGQGSAYYAP 245
Query: 338 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 393
A+S + ++ + E VY G YG+ D+ +P G G ++++
Sbjct: 246 ALSAITMAQAFL--KDEKRVLPCSVYCQGE-YGL-HDMFIGLPAVIGGGGIEQVIE 297
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 12/204 (5%)
Query: 128 IALKLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAK 182
+A K LG L +EGV A++L ++ +V++ G N Y +++ ++
Sbjct: 21 LAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGA 80
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAK 242
PR PGM R L+ +N I + A S N +I+V NP + + + + +
Sbjct: 81 PRKPGMSREDLIKVNADI-TRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKER 139
Query: 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK 302
LD R + +A++AGV + V M + G H VP + I+G+PV E I
Sbjct: 140 VIGQAGVLDAARYRTFIAMEAGVSVEDVQAM-LMGGHGDEMVPLPRFSTISGIPVSEFIA 198
Query: 303 DHKWLEEGFTETIQKVRLRGGLLI 326
+ + +++ R GG ++
Sbjct: 199 PDR-----LAQIVERTRKGGGEIV 217
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 10/189 (5%)
Query: 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222
G N Y D++ ++ PR PGM R LL N I E + S+N +IVV
Sbjct: 60 GSNDYADTADSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMK-HSKNPIIIVVS 118
Query: 223 NPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQLALKAGVFYDKVSNMTIWGNHST 281
NP + + + +P + + LD R + +A++ GV + N + G H
Sbjct: 119 NPLDIMTHVAWVRS-GLPKERVIGMAGVLDAARFRSFIAMELGVSMQDI-NACVLGGHGD 176
Query: 282 TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSA-ASTAVS 340
VP + G+P+ +++ E + +++ R G +++ + SA + A S
Sbjct: 177 AMVPVVKYTTVAGIPISDLLP-----AETIDKLVERTRNGGAEIVEHLKQGSAFYAPASS 231
Query: 341 IVDAMKSLV 349
+V+ ++S+V
Sbjct: 232 VVEMVESIV 240
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 12/204 (5%)
Query: 128 IALKLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAK 182
+A K LG L +EGV A++L ++ +V++ G N Y +++ ++
Sbjct: 21 LAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGA 80
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAK 242
PR PGM R L+ +N I + A S N +I+V NP + + + + +
Sbjct: 81 PRKPGMSREDLIKVNADI-TRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKER 139
Query: 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK 302
LD R + +A++AGV V M + G H VP + I+G+PV E I
Sbjct: 140 VIGQAGVLDAARYRTFIAMEAGVSVQDVQAM-LMGGHGDEMVPLPRFSTISGIPVSEFIA 198
Query: 303 DHKWLEEGFTETIQKVRLRGGLLI 326
+ + +++ R GG ++
Sbjct: 199 PDR-----LAQIVERTRKGGGEIV 217
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 12/204 (5%)
Query: 128 IALKLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAK 182
+A K LG L +EGV A++L ++ +V++ G N Y +++ ++
Sbjct: 21 LAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGA 80
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAK 242
PR PGM R L+ +N I + A S N +I+V NP + + + + +
Sbjct: 81 PRKPGMSREDLIKVNADI-TRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKER 139
Query: 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK 302
LD R + +A++AGV V M + G H VP + I+G+PV E I
Sbjct: 140 VIGQAGVLDAARYRTFIAMEAGVSVKDVQAM-LMGGHGDEMVPLPRFSTISGIPVSEFIA 198
Query: 303 DHKWLEEGFTETIQKVRLRGGLLI 326
+ + +++ R GG ++
Sbjct: 199 PDR-----LAQIVERTRKGGGEIV 217
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 12/204 (5%)
Query: 128 IALKLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAK 182
+A K LG L +EGV A++L ++ +V++ G N Y +++ ++
Sbjct: 21 LAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGA 80
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAK 242
PR PGM R L+ +N I + A S N +I+V NP + + + + +
Sbjct: 81 PRKPGMSREDLIKVNADI-TRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKER 139
Query: 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK 302
LD R + +A++AGV + V M + G H VP + I+G+PV E I
Sbjct: 140 VIGQAGVLDAARYRTFIAMEAGVSVEDVQAM-LMGGHGDEMVPLPRFSCISGIPVSEFIA 198
Query: 303 DHKWLEEGFTETIQKVRLRGGLLI 326
+ + +++ R GG ++
Sbjct: 199 PDR-----LAQIVERTRKGGGEIV 217
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 97/210 (46%), Gaps = 11/210 (5%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
+G A+++ +S L + K+ G N Y +++ ++ PR PGM R LL N I
Sbjct: 39 QGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIV 98
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQLA 260
E + S+N +IVV NP + + + +P + + LD R + +A
Sbjct: 99 KEVTDNIMK-HSKNPIIIVVSNPLDIMTHVAWVRS-GLPKERVIGMAGVLDAARFRSFIA 156
Query: 261 LKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRL 320
++ GV + N + G H VP + G+P+ +++ E + +++ R
Sbjct: 157 MELGVSMQDI-NACVLGGHGDAMVPVVKYTTVAGIPISDLLP-----AETIDKLVERTRN 210
Query: 321 RGGLLIKKWGRSSA-ASTAVSIVDAMKSLV 349
G +++ + SA + A S+V+ ++S+V
Sbjct: 211 GGAEIVEHLKQGSAFYAPASSVVEMVESIV 240
>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|B Chain B, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|C Chain C, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|D Chain D, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
Length = 331
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 107/256 (41%), Gaps = 21/256 (8%)
Query: 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231
D+EW+ R LL N +I E G+ + + +IVV NP + +
Sbjct: 96 DSEWS-------------RNDLLPFNSKIIREIGQNIKKYCPKTF-IIVVTNPLDCMVKV 141
Query: 232 CLKNAPSIPAKNFHALT-RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNA 290
+ A +P + LD R + +A V V T+ G H VP
Sbjct: 142 -MXEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV-QATVIGTHGDCMVPLVRYI 199
Query: 291 RINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVT 350
+NG P+++ IKD E+ E + ++ GG +++ G+ SA + AM +
Sbjct: 200 TVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFL 259
Query: 351 PTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQ 410
E VY NG YG+ +D+ +P G G E V ++ ++ +K+ K+
Sbjct: 260 -NDEKRVIPCSVYCNGE-YGL-KDMFIGLPAVIGGAG-IERVIELELNEEEKKQFQKSVD 315
Query: 411 ELLAEKKCVAHLTGEG 426
+++A K VA L G
Sbjct: 316 DVMALNKAVAALQAPG 331
>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form
pdb|1PZF|A Chain A, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|B Chain B, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|C Chain C, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|D Chain D, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZH|A Chain A, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|B Chain B, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|C Chain C, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|D Chain D, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
Length = 331
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 107/256 (41%), Gaps = 21/256 (8%)
Query: 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231
D+EW+ R LL N +I E G+ + + +IVV NP + +
Sbjct: 96 DSEWS-------------RNDLLPFNSKIIREIGQNIKKYCPKTF-IIVVTNPLDCMVKV 141
Query: 232 CLKNAPSIPAKNFHALT-RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNA 290
+ A +P + LD R + +A V V T+ G H VP
Sbjct: 142 -MCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV-QATVIGTHGDCMVPLVRYI 199
Query: 291 RINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVT 350
+NG P+++ IKD E+ E + ++ GG +++ G+ SA + AM +
Sbjct: 200 TVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFL 259
Query: 351 PTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQ 410
E VY NG YG+ +D+ +P G G E V ++ ++ +K+ K+
Sbjct: 260 -NDEKRVIPCSVYCNGE-YGL-KDMFIGLPAVIGGAG-IERVIELELNEEEKKQFQKSVD 315
Query: 411 ELLAEKKCVAHLTGEG 426
+++A K VA L G
Sbjct: 316 DVMALNKAVAALQAPG 331
>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|C Chain C, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|D Chain D, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
Length = 329
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 107/256 (41%), Gaps = 21/256 (8%)
Query: 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231
D+EW+ R LL N +I E G+ + + +IVV NP + +
Sbjct: 94 DSEWS-------------RNDLLPFNSKIIREIGQNIKKYCPKTF-IIVVTNPLDCMVKV 139
Query: 232 CLKNAPSIPAKNFHALT-RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNA 290
+ A +P + LD R + +A V V T+ G H VP
Sbjct: 140 -MCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV-QATVIGTHGDCMVPLVRYI 197
Query: 291 RINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVT 350
+NG P+++ IKD E+ E + ++ GG +++ G+ SA + AM +
Sbjct: 198 TVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFL 257
Query: 351 PTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQ 410
E VY NG YG+ +D+ +P G G E V ++ ++ +K+ K+
Sbjct: 258 -NDEKRVIPCSVYCNGE-YGL-KDMFIGLPAVIGGAG-IERVIELELNEEEKKQFQKSVD 313
Query: 411 ELLAEKKCVAHLTGEG 426
+++A K VA L G
Sbjct: 314 DVMALNKAVAALQAPG 329
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 123/289 (42%), Gaps = 17/289 (5%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
K VN AG + + F L +Q I +L+ + + + G M+L
Sbjct: 3 KHVNKVALIGAGFVGSSYAFALI-------NQGITDELVVIDVNKEKAMGDVMDLNHGKA 55
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
+ VK YE +DA+ + + PG R L++ N +IF +G +AS
Sbjct: 56 FAPQPVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIF--KGIVSEVMASG 113
Query: 215 NVKVIVVG-NPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
+ +V NP + K + + + T LD R + L+ G V +
Sbjct: 114 FDGIFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNV-HA 172
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEII-KDHKWLEEGFTETIQKVRLRGGLLIKKWGRS 332
I G H T++P + +A + G+PV E++ K+ + +E + + V+ +I+K G +
Sbjct: 173 HIIGEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKG-A 231
Query: 333 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 381
+ A+S+ K+++ E + Y +G YG A+D+ +P
Sbjct: 232 TYYGVAMSLARITKAIL--HNENSILTVSTYLDGQ-YG-ADDVYIGVPA 276
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 122/289 (42%), Gaps = 17/289 (5%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
K VN AG + + F L +Q I +L+ + + + G M+L
Sbjct: 3 KHVNKVALIGAGFVGSSYAFALI-------NQGITDELVVIDVNKEKAMGDVMDLNHGKA 55
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
+ VK YE +DA+ + + PG R L++ N +IF +G +AS
Sbjct: 56 FAPQPVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIF--KGIVSEVMASG 113
Query: 215 NVKVIVVG-NPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
+ +V NP + K + + + T LD R + L+ G V
Sbjct: 114 FDGIFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAH 173
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEII-KDHKWLEEGFTETIQKVRLRGGLLIKKWGRS 332
I G H T++P + +A + G+PV E++ K+ + +E + + V+ +I+K G +
Sbjct: 174 II-GEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKG-A 231
Query: 333 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 381
+ A+S+ K+++ E + Y +G YG A+D+ +P
Sbjct: 232 TYYGVAMSLARITKAIL--HNENSILTVSTYLDGQ-YG-ADDVYIGVPA 276
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 9/240 (3%)
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
+G A++LED+L P KI Y +DA+ ++ P+ PG R L++ N +I
Sbjct: 48 KGDAIDLEDAL-PFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILK 106
Query: 203 EQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
+ + N +V NP + K + + + T LD R + +A
Sbjct: 107 SIVDPI-VDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKM 165
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL-EEGFTETIQKVRLR 321
V V + I G H T+ P + +A I G+ + E +K H + E+ + + VR +
Sbjct: 166 VNVDARSV-HAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNK 224
Query: 322 GGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 381
+IK G ++ A ++ K+++ E VY +G YG+ DI P
Sbjct: 225 AYEIIKLKG-ATFYGIATALARISKAIL--NDENAVLPLSVYMDGQ-YGL-NDIYIGTPA 279
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 12/180 (6%)
Query: 144 GVAMELEDSLFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
GVA +L S P +K G +P E A+ L+ R PG +RA L ++N I
Sbjct: 44 GVAADL--SHIPTHVSIKGYAGEDPTPALEGADVVLISAGVARKPGXDRADLFNVNAGIV 101
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAKCQ 258
+ + AV N + ++ NP NT I LK A + +T LD R++
Sbjct: 102 KSLAERI-AVVCPNACIGIITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETF 160
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV--KEIIKDHKWLEEGFTETIQ 316
+A G +V I G+ T +P L +++ G+ +EI K ++ TE ++
Sbjct: 161 VAELKGQDPGEVRVPVIGGHSGVTILP--LLSQVEGVEFSDEEIAALTKRIQNAGTEVVE 218
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 4/148 (2%)
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
P+ ++ + DA+ +L + PG R LL+ N IF E + A
Sbjct: 50 PVSHGTRVWHGGHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPD 109
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
V ++V NP + + + AP P + T LD R + +A AGV
Sbjct: 110 AV-LLVTSNPVDLLTDLATQLAPGQPV--IGSGTVLDSARFRHLMAQHAGVDGTHAHGY- 165
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIK 302
+ G H ++V + +A + G+PV + ++
Sbjct: 166 VLGEHGDSEVLAWSSAMVAGMPVADFMQ 193
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
P V + Y E A +L + PG R LLD N Q+FA+ + A
Sbjct: 50 PFAHPVWVRAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPE 109
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
V ++V NP + + + + P + + T LD R + LA V V +
Sbjct: 110 AV-LLVATNPVDVXTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSV-HAY 167
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEI 300
+ G H ++V + +A++ G+P+ E
Sbjct: 168 VLGEHGDSEVLVWSSAQVGGVPLLEF 193
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 134/319 (42%), Gaps = 26/319 (8%)
Query: 80 LTYDLKAEEETKSWKKMVNIAVSGAAGM-IANHLLFKLAAGEVLGPDQPIALKLLGSERS 138
L Y+L EE+T K + + GA GM A +L K A E+ D I KL G
Sbjct: 7 LIYNLLKEEQTPQNK--ITVVGVGAVGMACAISILMKDLADELALVD-VIEDKLKGEMMD 63
Query: 139 LQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 197
LQ SLF LR KI Y + +++ ++ + G R L+ N
Sbjct: 64 LQ---------HGSLF--LRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRN 112
Query: 198 GQIFAEQGKALNAVA-SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAK 256
IF + N V S N K+++V NP + + K + + + LD R +
Sbjct: 113 VNIF--KFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFR 170
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD--HKWLEEGFTET 314
+ + GV + + + G H + VP + + G+ +K + D +E + E
Sbjct: 171 YLMGERLGV-HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEV 229
Query: 315 IQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAED 374
++V +IK G +S A +S+ D +S++ S+ + YGI +D
Sbjct: 230 HKQVVESAYEVIKLKGYTSWA-IGLSVADLAESIMKNLRRVHPVSTMI---KGLYGIKDD 285
Query: 375 IVFSMPCRSKGDGDYELVK 393
+ S+PC +G +LVK
Sbjct: 286 VFLSVPCILGQNGISDLVK 304
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 134/319 (42%), Gaps = 26/319 (8%)
Query: 80 LTYDLKAEEETKSWKKMVNIAVSGAAGM-IANHLLFKLAAGEVLGPDQPIALKLLGSERS 138
L Y+L EE+T K + + GA GM A +L K A E+ D I KL G
Sbjct: 7 LIYNLLKEEQTPQNK--ITVVGVGAVGMACAISILMKDLADELALVD-VIEDKLKGEMMD 63
Query: 139 LQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 197
LQ SLF LR KI Y + +++ ++ + G R L+ N
Sbjct: 64 LQ---------HGSLF--LRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRN 112
Query: 198 GQIFAEQGKALNAVA-SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAK 256
IF + N V S N K+++V NP + + K + + + LD R +
Sbjct: 113 VNIF--KFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFR 170
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD--HKWLEEGFTET 314
+ + GV + + + G H + VP + + G+ +K + D +E + E
Sbjct: 171 YLMGERLGV-HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEV 229
Query: 315 IQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAED 374
++V +IK G +S A +S+ D +S++ S+ + YGI +D
Sbjct: 230 HKQVVESAYEVIKLKGYTSWA-IGLSVADLAESIMKNLRRVHPVSTMI---KGLYGIKDD 285
Query: 375 IVFSMPCRSKGDGDYELVK 393
+ S+PC +G +LVK
Sbjct: 286 VFLSVPCILGQNGISDLVK 304
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 101/240 (42%), Gaps = 9/240 (3%)
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
+G A++L ++L P KI Y +DA+ ++ P+ PG R L++ N +I
Sbjct: 47 KGDAIDLSNAL-PFTSPKKIYSAEYSDAKDADLVVITAGAPKQPGETRLDLVNKNLKILK 105
Query: 203 EQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
+ + N+ +V NP + K + + + T LD R + +A
Sbjct: 106 SIVDPI-VDSGFNLIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEM 164
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL-EEGFTETIQKVRLR 321
V V + I G H T+ P + +A I G+ + E +K H + E+ + + VR
Sbjct: 165 VNVDARSV-HAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDA 223
Query: 322 GGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 381
+IK G ++ A ++ K+++ E VY +G YGI D+ P
Sbjct: 224 AYEIIKLKG-ATFYGIATALARISKAIL--NDENAVLPLSVYMDGQ-YGI-NDLYIGTPA 278
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
P V + Y E A +L + PG R LLD N Q+FA+ + A
Sbjct: 50 PFAHPVWVRAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPE 109
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
V ++V NP + + + + P + + T LD R + LA V V +
Sbjct: 110 AV-LLVATNPVDVMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSV-HAY 167
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEI 300
+ G H ++V + +A++ G+P+ E
Sbjct: 168 VLGEHGDSEVLVWSSAQVGGVPLLEF 193
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
P V + Y E A +L + PG R LLD N Q+FA+ + A
Sbjct: 50 PFAHPVWVRAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPE 109
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
V ++V NP + + + + P + + T LD R + LA V V +
Sbjct: 110 AV-LLVATNPVDVMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSV-HAY 167
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEI 300
+ G H ++V + +A++ G+P+ E
Sbjct: 168 VLGEHGDSEVLVWSSAQVGGVPLLEF 193
>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LLD|B Chain B, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LTH|T Chain T, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
pdb|1LTH|R Chain R, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
Length = 319
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 144/327 (44%), Gaps = 22/327 (6%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
K +AV GA G + + L F A G + I L+ + ER ++A E + M+ S +
Sbjct: 6 KPTKLAVIGA-GAVGSTLAFAAAQ---RGIAREIVLEDIAKER-VEA-EVLDMQHGSSFY 59
Query: 155 PLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
P V I G + E+ DA+ ++ + PG R L+ I L VA
Sbjct: 60 P---TVSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAP 116
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
N +++ NP + + K + F + T LD R + +A + GV V +
Sbjct: 117 -NAIYMLITNPVDIATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNV-HA 174
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKE--IIKDHKWLEEGFTETI-QKVRLRGGLLIKKWG 330
I G H ++VP + +A I G+P+ + + H L+ E I Q+V+ +I G
Sbjct: 175 YIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGKG 234
Query: 331 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYE 390
++ A +S VD +++++ T SS + + +GI+ DI S+P G
Sbjct: 235 ATNYA-IGMSGVDIIEAVLHDTNRILPVSSMLK---DFHGIS-DICMSVPTLLNRQGVNN 289
Query: 391 LVKDVIFDDYLR--KRIAKTEQELLAE 415
+ + D L KR A+T +E A+
Sbjct: 290 TINTPVSDKELAALKRSAETLKETAAQ 316
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FM3|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FNZ|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FNZ|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FRM|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|C Chain C, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|D Chain D, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
Length = 321
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 75/191 (39%), Gaps = 27/191 (14%)
Query: 143 EGVAMELEDSLFPLLREVK-IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
+G A+++ S+ K IG N Y ++ ++ + P P +R+ LL N +I
Sbjct: 42 QGKALDITHSMVMFGSTSKVIGTNDYADISGSDVVIITASIPGRPKDDRSELLFGNARI- 100
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRL----------- 250
L++VA V C +IC+ N + +F ++ L
Sbjct: 101 ------LDSVAEG------VKKYCPNAFVICITNPLDVMVSHFQKVSGLPHNKVCGMAGV 148
Query: 251 -DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
D +R + +A GV VS + G H VP + + G+P+ IK +E
Sbjct: 149 LDSSRFRTFIAQHFGVNASDVS-ANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQE 207
Query: 310 GFTETIQKVRL 320
E + R+
Sbjct: 208 QIDEIVCHTRI 218
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 6/148 (4%)
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
P V + Y E A +L + PG R LLD N Q+FA+ + A
Sbjct: 50 PFAHPVWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPE 109
Query: 215 NVKVIVVGNPCN--TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN 272
V ++V NP + T L P P + + T LD R + LA V V +
Sbjct: 110 AV-LLVATNPVDVMTQVAYALSGLP--PGRVVGSGTILDTARFRALLAEYLRVAPQSV-H 165
Query: 273 MTIWGNHSTTQVPDFLNARINGLPVKEI 300
+ G H ++V + +A++ G+P+ E
Sbjct: 166 AYVLGEHGDSEVLVWSSAQVGGVPLLEF 193
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 100/240 (41%), Gaps = 9/240 (3%)
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
+G A++L ++L P KI Y +DA+ ++ P+ PG R L++ N +I
Sbjct: 48 KGDAIDLSNAL-PFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILK 106
Query: 203 EQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
+ + N +V NP + K + + + T LD R + +A
Sbjct: 107 SIVDPI-VDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEM 165
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL-EEGFTETIQKVRLR 321
V V + I G H T+ P + +A I G+ + E +K H + E+ + + VR
Sbjct: 166 VNVDARSV-HAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDA 224
Query: 322 GGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 381
+IK G ++ A ++ K+++ E VY +G YG+ DI P
Sbjct: 225 AYEIIKLKG-ATFYGIATALARISKAIL--NDENAVLPLSVYMDGQ-YGL-NDIYIGTPA 279
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 111/261 (42%), Gaps = 29/261 (11%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE----GVAMELEDS 152
+ +AV GAAG I L +L P GSE SL + GVA++L S
Sbjct: 1 MKVAVLGAAGGIGQALAL------LLKTQLPS-----GSELSLYDIAPVTPGVAVDL--S 47
Query: 153 LFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA 210
P ++K G + E A+ L+ R PGM+R+ L ++N I + +
Sbjct: 48 HIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAK 107
Query: 211 VASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY 267
+ + ++ NP NT I LK A +T LD R+ +A G
Sbjct: 108 TCPKAC-IGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQP 166
Query: 268 DKVSNMTIWGNHSTTQVPDFLNARINGLPV--KEIIKDHKWLEEGFTETIQKVRLRGGLL 325
+V I G+ T +P L +++ G+ +E+ K ++ TE ++ + GG
Sbjct: 167 GEVEVPVIGGHSGVTILP--LLSQVPGVSFTEQEVADLTKRIQNAGTEVVE-AKAGGGSA 223
Query: 326 IKKWGRSSAASTAVSIVDAMK 346
G+ +AA +S+V A++
Sbjct: 224 TLSMGQ-AAARFGLSLVRALQ 243
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
Length = 318
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 110/262 (41%), Gaps = 10/262 (3%)
Query: 143 EGVAMELEDS-LFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
+G A++LED+ F +++ G Y +DA+ ++ P+ PG R L++ N I
Sbjct: 44 KGDALDLEDAQAFTAPKKIYSG--EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNIL 101
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLAL 261
+ K + + +V NP + K + + + T LD +R + L
Sbjct: 102 SSIVKPVVDSGFDGI-FLVAANPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGK 160
Query: 262 KAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLR 321
+ V V + I G H ++ + A I PV+++ K+ ++ + VR +
Sbjct: 161 QFNVDPRSV-DAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNK 219
Query: 322 GGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 381
+I G ++ +++ K+++ E G Y +G YG+ DI P
Sbjct: 220 AYDIINLKG-ATFYGIGTALMRISKAIL--RDENAVLPVGAYMDGQ-YGL-NDIYIGTPA 274
Query: 382 RSKGDGDYELVKDVIFDDYLRK 403
G G ++++ + D L+K
Sbjct: 275 IIGGTGLKQIIESPLSADELKK 296
>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide).
pdb|2EWD|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide)
Length = 317
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 27/191 (14%)
Query: 143 EGVAMELEDSLFPLLREVK-IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
+G A+++ S+ K IG + Y ++ ++ + P P +R+ LL N +I
Sbjct: 42 QGKALDITHSMVMFGSTSKVIGTDDYADISGSDVVIITASIPGRPKDDRSELLFGNARI- 100
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRL----------- 250
L++VA V C +IC+ N + +F ++ L
Sbjct: 101 ------LDSVAEG------VKKYCPNAFVICITNPLDVMVSHFQKVSGLPHNKVCGMAGV 148
Query: 251 -DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
D +R + +A GV VS + G H VP + + G+P+ IK +E
Sbjct: 149 LDSSRFRTFIAQHFGVNASDVS-ANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQE 207
Query: 310 GFTETIQKVRL 320
E + R+
Sbjct: 208 QIDEIVCHTRI 218
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 112/263 (42%), Gaps = 33/263 (12%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE----GVAMELEDS 152
+ +AV GAAG I L +L P GSE SL + GVA++L S
Sbjct: 1 MKVAVLGAAGGIGQALAL------LLKTQLPS-----GSELSLYDIAPVTPGVAVDL--S 47
Query: 153 LFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA 210
P ++K G + E A+ L+ R PGM+R+ L ++N I +
Sbjct: 48 HIPTAVKIKGFSGEDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVK---NLVQQ 104
Query: 211 VASRNVK--VIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAKCQLALKAGV 265
VA K + ++ NP NT I LK A +T LD R+ +A G
Sbjct: 105 VAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK 164
Query: 266 FYDKVSNMTIWGNHSTTQVPDFLNARINGLPV--KEIIKDHKWLEEGFTETIQKVRLRGG 323
+V I G+ T +P L +++ G+ +E+ K ++ TE ++ + GG
Sbjct: 165 QPGEVEVPVIGGHSGVTILP--LLSQVPGVSFTEQEVADLTKRIQNAGTEVVE-AKAGGG 221
Query: 324 LLIKKWGRSSAASTAVSIVDAMK 346
G+ +AA +S+V A++
Sbjct: 222 SATLSMGQ-AAARFGLSLVRALQ 243
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 110/261 (42%), Gaps = 29/261 (11%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE----GVAMELEDS 152
+ +AV GAAG I L +L P GSE SL + GVA++L S
Sbjct: 1 MKVAVLGAAGGIGQALAL------LLKTQLPS-----GSELSLYDIAPVTPGVAVDL--S 47
Query: 153 LFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA 210
P ++K G + E A+ L+ R PGM+R+ L ++N I + +
Sbjct: 48 HIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAK 107
Query: 211 VASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY 267
+ + ++ NP NT I LK A +T LD + +A G
Sbjct: 108 TCPKAC-IGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQP 166
Query: 268 DKVSNMTIWGNHSTTQVPDFLNARINGLPV--KEIIKDHKWLEEGFTETIQKVRLRGGLL 325
+V I G+ T +P L +++ G+ +E+ K ++ TE ++ + GG
Sbjct: 167 GEVEVPVIGGHSGVTILP--LLSQVPGVSFTEQEVADLTKRIQNAGTEVVE-AKAGGGSA 223
Query: 326 IKKWGRSSAASTAVSIVDAMK 346
G+ +AA +S+V A++
Sbjct: 224 TLSMGQ-AAARFGLSLVRALQ 243
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 144 GVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
G AM+L + + + KI G Y L + +E ++ R PGM R L N I
Sbjct: 40 GEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIK 99
Query: 203 EQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQL 259
+ K + A + K++VV NP + I K + + F +LD R K +L
Sbjct: 100 DIAKKIVENAPES-KILVVTNPMDVMTYIMWKESGKPRNEVFGMGNQLDSQRLKERL 155
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 113/260 (43%), Gaps = 20/260 (7%)
Query: 142 LEGVAMELED-SLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQ 199
L+G M+L+ SLF LR KI Y + +++ ++ + G R L+ N
Sbjct: 57 LKGEMMDLQHGSLF--LRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 200 IFAEQGKALNAVA-SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
IF + N V S + K++VV NP + + K + + + LD R +
Sbjct: 115 IF--KFIIPNVVKYSPHCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYL 172
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL-----EEGFTE 313
+ + GV + + I G H + VP + + G+ +K + H L +E + +
Sbjct: 173 MGERLGV-HALSCHGWILGEHGDSSVPVWSGMNVAGVSLKTL---HPELGTDADKEQWKQ 228
Query: 314 TIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAE 373
++V +IK G ++ A +S+ D +S++ S+ + YGI E
Sbjct: 229 VHKQVVDSAYEVIKLKGYTTWA-IGLSVADLAESIMKNLRRVHPISTML---KGLYGIKE 284
Query: 374 DIVFSMPCRSKGDGDYELVK 393
D+ S+PC +G ++VK
Sbjct: 285 DVFLSVPCVLGQNGISDVVK 304
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 97/248 (39%), Gaps = 19/248 (7%)
Query: 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226
YE ++ ++ PR PG R L N I + +L+ + + NP +
Sbjct: 66 YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS-LTTSNPVD 124
Query: 227 TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM--TIWGNHSTTQV 284
+ + RLD R + L+ + F V N+ TI G H QV
Sbjct: 125 LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEE---FDAPVQNVEGTILGEHGDAQV 181
Query: 285 PDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDA 344
P F R++G + + + L E+ V R G +WG A +
Sbjct: 182 PVFSKVRVDGTDPEFSGDEKEQLLGDLQESAMDVIERKGA--TEWG------PARGVAHM 233
Query: 345 MKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKR 404
+++++ T G+ + V G +G ED F +P R +G E+V+ DDY +
Sbjct: 234 VEAILHDT--GEVLPASVKLEGE-FG-HEDTAFGVPVRLGSNGVEEIVE-WDLDDYEQDL 288
Query: 405 IAKTEQEL 412
+A ++L
Sbjct: 289 MADAAEKL 296
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 97/248 (39%), Gaps = 19/248 (7%)
Query: 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226
YE ++ ++ PR PG R L N I + +L+ + + NP +
Sbjct: 65 YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS-LTTSNPVD 123
Query: 227 TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM--TIWGNHSTTQV 284
+ + RLD R + L+ + F V N+ TI G H QV
Sbjct: 124 LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEE---FDAPVQNVEGTILGEHGDAQV 180
Query: 285 PDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDA 344
P F R++G + + + L E+ V R G +WG A +
Sbjct: 181 PVFSKVRVDGTDPEFSGDEKEQLLGDLQESAMDVIERKGA--TEWG------PARGVAHM 232
Query: 345 MKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKR 404
+++++ T G+ + V G +G ED F +P R +G E+V+ DDY +
Sbjct: 233 VEAILHDT--GEVLPASVKLEGE-FG-HEDTAFGVPVRLGSNGVEEIVE-WDLDDYEQDL 287
Query: 405 IAKTEQEL 412
+A ++L
Sbjct: 288 MADAAEKL 295
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D0O|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D4P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
pdb|3D4P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
Length = 317
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 84/195 (43%), Gaps = 8/195 (4%)
Query: 125 DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPR 184
+Q I +L+ + + + G M+L+ + V++ Y DA+ ++ +
Sbjct: 27 NQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAAQ 86
Query: 185 GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTNALICLKNAPSIPAKN 243
PG R L+ N +IF + +AS+ + +V NP + A K + +
Sbjct: 87 KPGETRLDLVSKNLKIF--KSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERV 144
Query: 244 FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD 303
+ T LD R + L+ V V + I G H T++P + +A I G P+K +++
Sbjct: 145 IGSGTILDSARFRLLLSEAFDVAPRSV-DAQIIGEHGDTELPVWSHANIAGQPLKTLLEQ 203
Query: 304 H----KWLEEGFTET 314
+E+ F +T
Sbjct: 204 RPEGKAQIEQIFVQT 218
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 93/254 (36%), Gaps = 33/254 (12%)
Query: 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226
YE ++ ++ PR PG R L N I + +L+ + + NP +
Sbjct: 65 YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS-LTTSNPVD 123
Query: 227 TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM--TIWGNHSTTQV 284
+ + RLD R + L+ + F V N+ TI G H QV
Sbjct: 124 LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEE---FDAPVQNVEGTILGEHGDAQV 180
Query: 285 PDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDA 344
P F R++G + + + L E+ V R G +WG + + V +
Sbjct: 181 PVFSKVRVDGTDPEFSGDEKEQLLGDLQESAMDVIERKGA--TEWGPARGVAHMVEAILH 238
Query: 345 MKSLVTPTP---EGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYL 401
V P EG++ ED F +P R +G E+V+ DDY
Sbjct: 239 DTGRVLPASVKLEGEFGH-------------EDTAFGVPVRLGSNGVEEIVE-WDLDDY- 283
Query: 402 RKRIAKTEQELLAE 415
EQ+L+A+
Sbjct: 284 -------EQDLMAD 290
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 111/260 (42%), Gaps = 20/260 (7%)
Query: 142 LEGVAMELED-SLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQ 199
L+G M+L+ SLF LR KI Y + ++ ++ + G R L+ N
Sbjct: 58 LKGEMMDLQHGSLF--LRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVN 115
Query: 200 IFAEQGKALNAVA-SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
IF + N V S N K++VV NP + + K + + + LD R +
Sbjct: 116 IF--KFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYL 173
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL-----EEGFTE 313
+ + GV + + I G H + VP + + G+ +K + H L +E +
Sbjct: 174 MGERLGV-HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNL---HPELGTDADKEHWKA 229
Query: 314 TIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAE 373
++V +IK G +S A +S+ D +S++ S+ + YGI E
Sbjct: 230 VHKEVVDSAYEVIKLKGYTSWA-IGLSVADLAESIMKNLRRVHPISTMI---KGLYGIKE 285
Query: 374 DIVFSMPCRSKGDGDYELVK 393
++ S+PC +G ++VK
Sbjct: 286 NVFLSVPCILGQNGISDVVK 305
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
pdb|3H3J|B Chain B, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
Length = 317
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 84/195 (43%), Gaps = 8/195 (4%)
Query: 125 DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPR 184
+Q I +L+ + + + G M+L+ + V++ Y DA+ ++ +
Sbjct: 27 NQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGARQ 86
Query: 185 GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTNALICLKNAPSIPAKN 243
PG R L+ N +IF + +AS+ + +V NP + A K + +
Sbjct: 87 KPGETRLDLVSKNLKIF--KSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERV 144
Query: 244 FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD 303
+ T LD R + L+ V V + I G H T++P + +A I G P+K +++
Sbjct: 145 IGSGTILDSARFRLLLSEAFDVAPRSV-DAQIIGEHGDTELPVWSHANIAGQPLKTLLEQ 203
Query: 304 H----KWLEEGFTET 314
+E+ F +T
Sbjct: 204 RPEGKAQIEQIFVQT 218
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 110/278 (39%), Gaps = 23/278 (8%)
Query: 128 IALKLLGSERSL-----QALEGVAMELED-SLFPLLREVKIGINPYELFEDAEWALLIGA 181
I LK L E +L L G A++L+ SLF ++ G Y + +++ ++
Sbjct: 38 ILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFG-KDYNVSANSKLVIITAG 96
Query: 182 KPRGPGMERAGLLDINGQIFAEQGKALNAVASRN---VKVIVVGNPCNTNALICLKNAPS 238
G R LL N I KA+ +N K+IVV NP + + K +
Sbjct: 97 ARMVSGQTRLDLLQRNVAIM----KAIVPGVIQNSPDCKIIVVTNPVDILTYVVWKISGF 152
Query: 239 IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVK 298
+ + LD R + + K GV + G H + VP + + G+ +K
Sbjct: 153 PVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVL-GEHGDSSVPIWSGVNVAGVTLK 211
Query: 299 EI---IKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEG 355
+ I K + + + K + GG + ++ + +S+ D +S++
Sbjct: 212 SLNPAIGTDK--NKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRV 269
Query: 356 DWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 393
++ V +GI E++ S+PC G + VK
Sbjct: 270 HPVTTLVK---GFHGIKEEVFLSIPCVLGESGITDFVK 304
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 116/281 (41%), Gaps = 15/281 (5%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
L+G M+L+ L + Y + +++ ++ + G R L+ N IF
Sbjct: 58 LKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIF 117
Query: 202 AEQGKALNAVA-SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLA 260
+ N V S K+++V NP + + K + + + LD R + +
Sbjct: 118 --KFIIPNVVKYSPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMG 175
Query: 261 LKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVK----EIIKDHKWLEEGFTETIQ 316
+ GV + + + G H + VP + + G+ +K ++ D +E + + +
Sbjct: 176 ERLGV-HPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDAD--KEQWKDVHK 232
Query: 317 KVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIV 376
+V +IK G +S A +S+ D +S++ S+ + YGI ED+
Sbjct: 233 QVVDSAYEVIKLKGYTSWA-IGLSVADLAESIMKNLRRVHPISTMI---KGLYGIKEDVF 288
Query: 377 FSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKK 417
S+PC +G ++VK + D R+ K+ L +K
Sbjct: 289 LSVPCILGQNGISDVVKVTLTPDE-EARLKKSADTLWGIQK 328
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 116/281 (41%), Gaps = 15/281 (5%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
L+G M+L+ L + Y + +++ ++ + G R L+ N IF
Sbjct: 57 LKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIF 116
Query: 202 AEQGKALNAVA-SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLA 260
+ N V S K+++V NP + + K + + + LD R + +
Sbjct: 117 --KFIIPNVVKYSPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMG 174
Query: 261 LKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVK----EIIKDHKWLEEGFTETIQ 316
+ GV + + + G H + VP + + G+ +K ++ D +E + + +
Sbjct: 175 ERLGV-HPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDAD--KEQWKDVHK 231
Query: 317 KVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIV 376
+V +IK G +S A +S+ D +S++ S+ + YGI ED+
Sbjct: 232 QVVDSAYEVIKLKGYTSWA-IGLSVADLAESIMKNLRRVHPISTMI---KGLYGIKEDVF 287
Query: 377 FSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKK 417
S+PC +G ++VK + D R+ K+ L +K
Sbjct: 288 LSVPCILGQNGISDVVKVTLTPDE-EARLKKSADTLWGIQK 327
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
Length = 317
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 9/198 (4%)
Query: 105 AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI 164
AG + +F L +Q IA +++ + + G AM+ + V I
Sbjct: 14 AGFVGASYVFALM-------NQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66
Query: 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224
Y+ DA+ ++ + PG R L+D N IF +++ A + + +V NP
Sbjct: 67 GDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGL-FLVATNP 125
Query: 225 CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV 284
+ K + + + T LD R + L V V I G H T++
Sbjct: 126 VDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYII-GEHGDTEL 184
Query: 285 PDFLNARINGLPVKEIIK 302
P + A I +P++++++
Sbjct: 185 PVWSQAYIGVMPIRKLVE 202
>pdb|2KA5|A Chain A, Nmr Structure Of The Protein Tm1081
Length = 125
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 368 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRK 403
PY I +D+V MP + + L K +FD++L K
Sbjct: 15 PYKIVDDVVILMPNKELNIENAHLFKKWVFDEFLNK 50
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|B Chain B, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|C Chain C, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|D Chain D, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|E Chain E, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|F Chain F, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|G Chain G, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|H Chain H, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
Length = 316
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 9/198 (4%)
Query: 105 AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI 164
AG + +F L +Q IA +++ + + G AM+ + V I
Sbjct: 14 AGFVGASYVFALM-------NQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66
Query: 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224
Y+ DA+ ++ + PG R L+D N IF +++ A + + +V NP
Sbjct: 67 GDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGL-FLVATNP 125
Query: 225 CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV 284
+ K + + + T LD R + L V V I G H T++
Sbjct: 126 VDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYII-GEHGDTEL 184
Query: 285 PDFLNARINGLPVKEIIK 302
P + A I +P++++++
Sbjct: 185 PVWSQAYIGVMPIRKLVE 202
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 60/303 (19%), Positives = 120/303 (39%), Gaps = 26/303 (8%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAK 182
I LK L E +L L+G AM+L+ L + Y + +++ ++
Sbjct: 39 ILLKDLTDELALVDVMEDKLKGEAMDLQHGSLFLKTHKIVADKDYSVTANSKVVVVTAGA 98
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVA-SRNVKVIVVGNPCNTNALICLKNAPSIPA 241
+ G R L+ N IF + N + S N ++VV NP + + K +
Sbjct: 99 RQQEGESRLNLVQRNVNIF--KFIIPNIIKYSPNCILLVVSNPVDILTYVAWKLSGLPRN 156
Query: 242 KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII 301
+ + T LD R + + K G+ I G H + VP + + G+ ++ +
Sbjct: 157 RVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVI-GEHGDSSVPVWSGVNVAGVFLQGLN 215
Query: 302 KD-------HKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPE 354
D W +++ K+ + + K ++ + +S D +S++ +
Sbjct: 216 PDMGTDKDKEDW------KSVHKMVVDSAYEVIKLKGYTSWAIGMSAADLCQSILKNLRK 269
Query: 355 GDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLA 414
S+ V +G+ E++ S+PC G ++V + D K++ K+ + L
Sbjct: 270 CHPVSTLVK---GMHGVNEEVFLSVPCILGNSGLTDVVHMTLKSDE-EKQLVKSAETLWG 325
Query: 415 EKK 417
+K
Sbjct: 326 VQK 328
>pdb|3UPU|A Chain A, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
pdb|3UPU|B Chain B, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
pdb|3UPU|C Chain C, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
Length = 459
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 283 QVPDFLNARINGLPVKEIIKDH----KWLEEGFTETIQKVR-LRGGLLIKKW 329
Q P F +I+G PV EII ++ + +E +T T K R + G LI+ W
Sbjct: 292 QEPLFKTYKIDGKPVSEIIFNNGQLVRIIEAEYTSTFVKARGVPGEYLIRHW 343
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 109/264 (41%), Gaps = 16/264 (6%)
Query: 142 LEGVAMELED-SLFPLLREVKIGINP-YELFEDAEWALLIGAKPRGPGMERAGLLDINGQ 199
L+G M+L+ SLF L+ KI N Y + +++ ++ + G R L+ N
Sbjct: 59 LKGEMMDLQHGSLF--LQTPKIVANKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVN 116
Query: 200 IFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQL 259
+F + S N +IVV NP + + K + + + LD R + +
Sbjct: 117 VFKFIIPQI-VKYSPNCIIIVVSNPVDILTYVAWKLSGLPKHRVIGSGCNLDSARFRYLM 175
Query: 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVK----EIIKDHKWLEEGFTETI 315
K GV + + I G H + V + + G+ ++ E+ D+ E + E
Sbjct: 176 GEKLGV-HPSSCHGWILGEHGDSSVAVWSGVNVAGVVLQQLNPEMGTDND--SENWKEVH 232
Query: 316 QKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDI 375
+ V +IK G ++ A +S+ D ++S++ S+ V YGI ++
Sbjct: 233 KMVVESAYEVIKLKGYTNWA-IGLSVADLIESMLKNLSRIHPVSTMVQ---GMYGIENEV 288
Query: 376 VFSMPCRSKGDGDYELVKDVIFDD 399
S+PC G ++ + DD
Sbjct: 289 FLSLPCVLNARGLTSVINQKLKDD 312
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 95/248 (38%), Gaps = 19/248 (7%)
Query: 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226
YE ++ ++ PR PG R L N I + +L+ + + NP +
Sbjct: 66 YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS-LTTSNPVD 124
Query: 227 TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM--TIWGNHSTTQV 284
+ + RLD R + L+ + F V N+ TI G H QV
Sbjct: 125 LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEE---FDAPVQNVEGTILGEHGDAQV 181
Query: 285 PDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDA 344
P F ++G + + + L E+ V R G +WG A +
Sbjct: 182 PVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERKGA--TEWG------PARGVAHM 233
Query: 345 MKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKR 404
+++++ T G+ + V G +G ED F +P +G E+V+ DDY +
Sbjct: 234 VEAILHDT--GEVLPASVKLEGE-FG-HEDTAFGVPVSLGSNGVEEIVE-WDLDDYEQDL 288
Query: 405 IAKTEQEL 412
+A ++L
Sbjct: 289 MADAAEKL 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,895,566
Number of Sequences: 62578
Number of extensions: 540726
Number of successful extensions: 1478
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1391
Number of HSP's gapped (non-prelim): 76
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)