Query 013466
Match_columns 442
No_of_seqs 185 out of 1464
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:08:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00112 malate dehydrogenase 100.0 2E-105 5E-110 824.9 42.9 435 4-442 3-444 (444)
2 TIGR01757 Malate-DH_plant mala 100.0 5.1E-89 1.1E-93 694.4 39.6 384 55-442 2-387 (387)
3 COG0039 Mdh Malate/lactate deh 100.0 1.5E-70 3.3E-75 541.9 33.4 310 97-423 1-311 (313)
4 PRK05442 malate dehydrogenase; 100.0 1.7E-70 3.6E-75 550.8 33.5 325 93-423 1-326 (326)
5 TIGR01759 MalateDH-SF1 malate 100.0 1.6E-69 3.4E-74 543.1 34.2 320 94-418 1-322 (323)
6 cd05295 MDH_like Malate dehydr 100.0 1.7E-67 3.6E-72 543.7 34.0 317 92-419 119-450 (452)
7 KOG1496 Malate dehydrogenase [ 100.0 6.9E-68 1.5E-72 493.6 25.2 327 93-424 1-331 (332)
8 cd01338 MDH_choloroplast_like 100.0 4.3E-67 9.3E-72 525.8 32.8 321 95-421 1-322 (322)
9 cd05290 LDH_3 A subgroup of L- 100.0 5.6E-67 1.2E-71 521.8 33.0 301 98-415 1-305 (307)
10 cd00704 MDH Malate dehydrogena 100.0 5.6E-67 1.2E-71 525.2 32.5 317 97-419 1-322 (323)
11 TIGR01758 MDH_euk_cyt malate d 100.0 1.2E-65 2.5E-70 515.8 31.8 318 98-420 1-323 (324)
12 PLN02602 lactate dehydrogenase 100.0 2.3E-65 5E-70 517.4 32.6 305 97-418 38-347 (350)
13 TIGR01771 L-LDH-NAD L-lactate 100.0 4.8E-65 1E-69 506.6 30.9 297 101-414 1-299 (299)
14 PRK00066 ldh L-lactate dehydro 100.0 1.7E-64 3.8E-69 506.2 34.7 307 94-418 4-312 (315)
15 cd05293 LDH_1 A subgroup of L- 100.0 2.4E-64 5.2E-69 504.2 34.3 304 96-416 3-310 (312)
16 PLN00135 malate dehydrogenase 100.0 2.1E-64 4.5E-69 502.5 31.5 302 116-423 2-308 (309)
17 TIGR01756 LDH_protist lactate 100.0 2E-64 4.3E-69 503.9 31.1 305 113-423 2-312 (313)
18 cd01336 MDH_cytoplasmic_cytoso 100.0 5.9E-64 1.3E-68 504.2 32.2 320 95-419 1-324 (325)
19 cd05291 HicDH_like L-2-hydroxy 100.0 3.5E-63 7.5E-68 495.6 34.0 304 97-417 1-305 (306)
20 KOG1495 Lactate dehydrogenase 100.0 3.6E-62 7.9E-67 462.2 29.5 305 96-417 20-328 (332)
21 PTZ00117 malate dehydrogenase; 100.0 1.2E-60 2.6E-65 479.6 36.2 311 95-423 4-318 (319)
22 cd00300 LDH_like L-lactate deh 100.0 5.4E-61 1.2E-65 478.4 31.8 297 99-416 1-299 (300)
23 cd05292 LDH_2 A subgroup of L- 100.0 5.3E-60 1.1E-64 472.9 34.0 303 97-417 1-306 (308)
24 PTZ00082 L-lactate dehydrogena 100.0 1.3E-58 2.7E-63 464.8 35.1 307 94-418 4-319 (321)
25 TIGR01772 MDH_euk_gproteo mala 100.0 6E-59 1.3E-63 464.3 31.5 296 98-424 1-311 (312)
26 cd01337 MDH_glyoxysomal_mitoch 100.0 7.8E-59 1.7E-63 462.7 30.6 295 97-422 1-309 (310)
27 TIGR01763 MalateDH_bact malate 100.0 2.4E-58 5.2E-63 460.0 32.6 299 97-418 2-304 (305)
28 cd05294 LDH-like_MDH_nadp A la 100.0 6E-58 1.3E-62 458.1 32.1 304 97-417 1-307 (309)
29 PRK06223 malate dehydrogenase; 100.0 5.7E-56 1.2E-60 443.4 34.2 300 96-418 2-305 (307)
30 PTZ00325 malate dehydrogenase; 100.0 5.9E-56 1.3E-60 444.0 33.3 301 93-424 5-318 (321)
31 cd01339 LDH-like_MDH L-lactate 100.0 3.9E-55 8.4E-60 436.3 32.7 295 99-416 1-299 (300)
32 PRK05086 malate dehydrogenase; 100.0 2.2E-54 4.9E-59 432.6 32.1 298 97-424 1-311 (312)
33 PLN00106 malate dehydrogenase 100.0 5E-53 1.1E-57 423.3 31.8 293 95-417 17-322 (323)
34 cd00650 LDH_MDH_like NAD-depen 100.0 8.6E-51 1.9E-55 397.9 28.6 258 99-416 1-262 (263)
35 KOG1494 NAD-dependent malate d 100.0 3.6E-48 7.8E-53 368.7 23.2 305 94-425 26-341 (345)
36 PF02866 Ldh_1_C: lactate/mala 100.0 1E-35 2.2E-40 274.3 18.8 171 248-422 1-173 (174)
37 cd05197 GH4_glycoside_hydrolas 100.0 5.4E-31 1.2E-35 273.4 28.3 288 97-406 1-378 (425)
38 PF00056 Ldh_1_N: lactate/mala 100.0 5.3E-32 1.1E-36 241.4 14.8 141 97-245 1-141 (141)
39 PRK15076 alpha-galactosidase; 100.0 1.2E-29 2.6E-34 264.0 31.0 284 96-406 1-372 (431)
40 cd05296 GH4_P_beta_glucosidase 100.0 9.4E-29 2E-33 256.3 30.2 284 97-406 1-367 (419)
41 cd05298 GH4_GlvA_pagL_like Gly 100.0 4.4E-27 9.5E-32 244.7 29.8 285 97-406 1-381 (437)
42 cd05297 GH4_alpha_glucosidase_ 100.0 6.8E-27 1.5E-31 243.5 29.5 286 97-406 1-375 (423)
43 COG1486 CelF Alpha-galactosida 99.9 3.8E-25 8.2E-30 226.3 27.1 289 95-408 2-386 (442)
44 PF02056 Glyco_hydro_4: Family 99.7 3.9E-17 8.4E-22 151.0 12.3 156 98-265 1-183 (183)
45 PF02737 3HCDH_N: 3-hydroxyacy 98.3 1.4E-06 3E-11 80.9 7.6 101 98-225 1-115 (180)
46 PRK07819 3-hydroxybutyryl-CoA 98.3 3.9E-06 8.4E-11 83.5 9.7 106 94-226 3-123 (286)
47 PRK07066 3-hydroxybutyryl-CoA 98.2 7.1E-06 1.5E-10 82.9 10.6 111 96-232 7-127 (321)
48 COG1250 FadB 3-hydroxyacyl-CoA 98.1 1.4E-05 3E-10 80.0 9.2 146 96-266 3-177 (307)
49 PRK08293 3-hydroxybutyryl-CoA 98.1 2E-05 4.4E-10 78.2 10.2 104 96-225 3-121 (287)
50 PRK05808 3-hydroxybutyryl-CoA 98.1 1.2E-05 2.7E-10 79.5 8.2 104 96-226 3-120 (282)
51 PF01210 NAD_Gly3P_dh_N: NAD-d 98.0 1.9E-05 4.2E-10 71.5 8.0 99 98-222 1-103 (157)
52 TIGR01915 npdG NADPH-dependent 98.0 4.9E-05 1.1E-09 72.5 11.1 103 97-226 1-105 (219)
53 PRK06035 3-hydroxyacyl-CoA deh 98.0 5.3E-05 1.1E-09 75.4 10.7 103 96-223 3-122 (291)
54 PRK06130 3-hydroxybutyryl-CoA 98.0 4.9E-05 1.1E-09 76.2 10.5 106 94-223 2-116 (311)
55 PRK11730 fadB multifunctional 97.9 4.1E-05 8.8E-10 85.4 10.7 105 96-227 313-431 (715)
56 PF03807 F420_oxidored: NADP o 97.9 2E-05 4.4E-10 64.8 6.3 95 98-224 1-96 (96)
57 TIGR02437 FadB fatty oxidation 97.9 5.2E-05 1.1E-09 84.5 11.4 105 95-226 312-430 (714)
58 COG2085 Predicted dinucleotide 97.9 0.00012 2.7E-09 69.1 12.0 96 96-225 1-96 (211)
59 PRK07530 3-hydroxybutyryl-CoA 97.9 4.6E-05 1E-09 75.8 9.4 100 95-219 3-116 (292)
60 TIGR02441 fa_ox_alpha_mit fatt 97.9 5.7E-05 1.2E-09 84.4 10.9 143 96-266 335-509 (737)
61 PRK11154 fadJ multifunctional 97.9 5.6E-05 1.2E-09 84.3 10.7 107 96-226 309-427 (708)
62 TIGR02440 FadJ fatty oxidation 97.9 8.5E-05 1.9E-09 82.7 11.9 104 96-226 304-422 (699)
63 PLN02545 3-hydroxybutyryl-CoA 97.9 6.4E-05 1.4E-09 74.9 9.8 101 94-219 2-116 (295)
64 PRK09260 3-hydroxybutyryl-CoA 97.8 0.00011 2.5E-09 72.9 10.0 98 97-218 2-113 (288)
65 PRK08268 3-hydroxy-acyl-CoA de 97.8 0.00011 2.3E-09 78.9 9.6 100 94-218 5-118 (507)
66 TIGR02279 PaaC-3OHAcCoADH 3-hy 97.7 0.00012 2.6E-09 78.4 8.7 104 96-226 5-122 (503)
67 KOG2304 3-hydroxyacyl-CoA dehy 97.6 4.7E-05 1E-09 72.3 4.2 111 94-226 9-134 (298)
68 PF03721 UDPG_MGDP_dh_N: UDP-g 97.6 0.00031 6.8E-09 65.5 8.7 106 97-222 1-120 (185)
69 PRK07531 bifunctional 3-hydrox 97.6 0.00046 1E-08 73.9 11.0 105 96-226 4-118 (495)
70 PRK00094 gpsA NAD(P)H-dependen 97.6 0.00059 1.3E-08 68.4 11.0 105 96-226 1-109 (325)
71 PRK12439 NAD(P)H-dependent gly 97.5 0.00057 1.2E-08 69.7 10.7 108 93-227 4-116 (341)
72 PRK07680 late competence prote 97.5 0.00088 1.9E-08 66.0 11.1 100 97-226 1-100 (273)
73 PF03446 NAD_binding_2: NAD bi 97.4 0.00072 1.6E-08 61.5 8.5 92 96-222 1-94 (163)
74 PRK14620 NAD(P)H-dependent gly 97.4 0.0013 2.7E-08 66.5 10.8 104 97-226 1-110 (326)
75 TIGR03376 glycerol3P_DH glycer 97.4 0.0015 3.3E-08 66.7 11.3 108 98-222 1-116 (342)
76 COG0240 GpsA Glycerol-3-phosph 97.3 0.0015 3.3E-08 65.8 9.9 114 96-237 1-125 (329)
77 PRK06129 3-hydroxyacyl-CoA deh 97.3 0.0024 5.2E-08 64.1 11.3 75 96-180 2-90 (308)
78 PF11975 Glyco_hydro_4C: Famil 97.3 0.0018 4E-08 62.4 10.0 66 337-408 138-203 (232)
79 PLN03209 translocon at the inn 97.2 0.0062 1.3E-07 66.0 14.8 119 94-223 78-208 (576)
80 PTZ00345 glycerol-3-phosphate 97.2 0.003 6.5E-08 65.1 11.9 107 94-222 9-129 (365)
81 PRK12491 pyrroline-5-carboxyla 97.2 0.0029 6.3E-08 62.6 11.2 70 97-181 3-72 (272)
82 COG1004 Ugd Predicted UDP-gluc 97.2 0.0028 6E-08 65.2 11.2 96 97-212 1-110 (414)
83 PF10727 Rossmann-like: Rossma 97.1 0.0014 3.1E-08 57.5 7.1 102 96-231 10-115 (127)
84 PRK12921 2-dehydropantoate 2-r 97.1 0.0022 4.7E-08 63.8 9.1 106 97-230 1-110 (305)
85 PRK07679 pyrroline-5-carboxyla 97.1 0.0047 1E-07 61.1 11.3 100 96-226 3-103 (279)
86 TIGR03026 NDP-sugDHase nucleot 97.1 0.0037 8.1E-08 65.3 10.9 110 97-222 1-120 (411)
87 PRK08655 prephenate dehydrogen 97.1 0.0063 1.4E-07 64.3 12.7 93 97-223 1-93 (437)
88 PRK06522 2-dehydropantoate 2-r 97.1 0.0033 7.2E-08 62.3 10.1 104 97-230 1-108 (304)
89 PRK07634 pyrroline-5-carboxyla 97.1 0.0059 1.3E-07 58.8 11.4 72 95-180 3-74 (245)
90 PRK14618 NAD(P)H-dependent gly 97.1 0.0044 9.5E-08 62.7 10.9 75 96-180 4-82 (328)
91 PRK06928 pyrroline-5-carboxyla 97.0 0.0057 1.2E-07 60.6 11.1 101 96-225 1-101 (277)
92 PLN02688 pyrroline-5-carboxyla 97.0 0.0046 1E-07 60.4 10.4 98 97-225 1-98 (266)
93 PRK08229 2-dehydropantoate 2-r 97.0 0.0036 7.8E-08 63.4 9.8 105 96-228 2-113 (341)
94 PRK11880 pyrroline-5-carboxyla 97.0 0.0049 1.1E-07 60.3 10.3 96 96-225 2-97 (267)
95 COG0345 ProC Pyrroline-5-carbo 97.0 0.0035 7.7E-08 61.7 9.1 70 96-180 1-70 (266)
96 PLN02353 probable UDP-glucose 97.0 0.0038 8.2E-08 66.5 10.0 119 96-227 1-133 (473)
97 COG0300 DltE Short-chain dehyd 96.9 0.016 3.5E-07 57.0 13.0 116 94-223 4-143 (265)
98 COG1748 LYS9 Saccharopine dehy 96.9 0.006 1.3E-07 63.1 10.3 75 96-181 1-77 (389)
99 PRK07417 arogenate dehydrogena 96.9 0.0061 1.3E-07 60.3 10.0 66 97-181 1-66 (279)
100 PF01118 Semialdhyde_dh: Semia 96.9 0.0051 1.1E-07 53.1 8.3 98 98-223 1-98 (121)
101 PRK15057 UDP-glucose 6-dehydro 96.8 0.027 5.9E-07 58.6 14.8 76 97-183 1-84 (388)
102 KOG1502 Flavonol reductase/cin 96.8 0.013 2.8E-07 59.2 11.2 121 95-225 5-130 (327)
103 PLN02695 GDP-D-mannose-3',5'-e 96.7 0.0032 7E-08 64.8 6.9 128 73-223 1-137 (370)
104 PRK07502 cyclohexadienyl dehyd 96.7 0.02 4.2E-07 57.4 12.3 70 96-181 6-75 (307)
105 PLN02166 dTDP-glucose 4,6-dehy 96.7 0.018 3.8E-07 60.9 12.2 113 94-223 118-234 (436)
106 PF01488 Shikimate_DH: Shikima 96.7 0.0053 1.2E-07 54.1 7.0 75 96-183 12-86 (135)
107 PRK12549 shikimate 5-dehydroge 96.6 0.0092 2E-07 59.4 9.0 73 96-179 127-199 (284)
108 PRK11064 wecC UDP-N-acetyl-D-m 96.5 0.015 3.2E-07 61.0 10.3 113 96-228 3-126 (415)
109 PF13460 NAD_binding_10: NADH( 96.5 0.025 5.4E-07 51.4 10.7 90 99-222 1-97 (183)
110 PRK14619 NAD(P)H-dependent gly 96.4 0.015 3.3E-07 58.3 9.3 80 96-224 4-84 (308)
111 CHL00194 ycf39 Ycf39; Provisio 96.4 0.015 3.3E-07 58.2 9.2 108 97-222 1-109 (317)
112 PTZ00431 pyrroline carboxylate 96.4 0.017 3.7E-07 56.6 9.1 61 97-179 4-64 (260)
113 COG1893 ApbA Ketopantoate redu 96.4 0.012 2.7E-07 59.2 8.3 108 97-229 1-108 (307)
114 COG0287 TyrA Prephenate dehydr 96.4 0.042 9.1E-07 54.7 11.8 106 96-234 3-110 (279)
115 PRK05708 2-dehydropantoate 2-r 96.3 0.028 6E-07 56.5 10.5 124 96-249 2-128 (305)
116 PRK06476 pyrroline-5-carboxyla 96.2 0.028 6.2E-07 54.8 9.9 70 97-181 1-70 (258)
117 TIGR03589 PseB UDP-N-acetylglu 96.2 0.02 4.3E-07 57.7 9.0 112 96-222 4-124 (324)
118 PLN02206 UDP-glucuronate decar 96.2 0.037 8E-07 58.5 11.3 112 95-223 118-233 (442)
119 PRK14982 acyl-ACP reductase; P 96.2 0.02 4.4E-07 58.4 8.9 97 96-228 155-252 (340)
120 PRK06249 2-dehydropantoate 2-r 96.2 0.021 4.5E-07 57.5 8.7 125 95-249 4-130 (313)
121 PTZ00142 6-phosphogluconate de 96.2 0.027 5.8E-07 60.0 9.9 100 96-224 1-103 (470)
122 PLN02427 UDP-apiose/xylose syn 96.2 0.045 9.7E-07 56.3 11.3 115 95-223 13-136 (386)
123 TIGR01745 asd_gamma aspartate- 96.1 0.039 8.5E-07 56.8 10.4 72 97-181 1-73 (366)
124 PLN02778 3,5-epimerase/4-reduc 96.1 0.066 1.4E-06 53.4 11.8 88 96-211 9-101 (298)
125 PRK15182 Vi polysaccharide bio 96.1 0.024 5.2E-07 59.7 8.9 75 95-185 5-89 (425)
126 COG2084 MmsB 3-hydroxyisobutyr 96.1 0.026 5.6E-07 56.2 8.5 66 97-181 1-66 (286)
127 COG2910 Putative NADH-flavin r 96.0 0.028 6E-07 52.3 8.0 105 97-223 1-105 (211)
128 PF01073 3Beta_HSD: 3-beta hyd 96.0 0.014 3.1E-07 57.8 6.7 113 101-225 2-117 (280)
129 PLN00198 anthocyanidin reducta 96.0 0.036 7.9E-07 55.8 9.7 114 96-222 9-130 (338)
130 TIGR00872 gnd_rel 6-phosphoglu 96.0 0.029 6.3E-07 56.1 8.8 96 97-225 1-96 (298)
131 PRK15181 Vi polysaccharide bio 96.0 0.11 2.4E-06 52.8 13.1 118 95-222 14-140 (348)
132 TIGR01505 tartro_sem_red 2-hyd 96.0 0.023 5E-07 56.4 8.0 63 98-180 1-63 (291)
133 cd05213 NAD_bind_Glutamyl_tRNA 96.0 0.033 7.2E-07 56.1 9.2 103 95-228 177-279 (311)
134 PLN02256 arogenate dehydrogena 96.0 0.094 2E-06 52.8 12.3 92 95-223 35-128 (304)
135 COG1712 Predicted dinucleotide 96.0 0.053 1.1E-06 51.9 9.6 97 97-226 1-97 (255)
136 PRK08507 prephenate dehydrogen 95.9 0.074 1.6E-06 52.4 11.2 67 97-181 1-67 (275)
137 TIGR02354 thiF_fam2 thiamine b 95.9 0.058 1.3E-06 51.0 9.9 34 96-134 21-54 (200)
138 KOG1205 Predicted dehydrogenas 95.9 0.098 2.1E-06 52.0 11.8 119 96-228 12-155 (282)
139 PRK06598 aspartate-semialdehyd 95.9 0.059 1.3E-06 55.6 10.6 73 96-181 1-74 (369)
140 PRK06545 prephenate dehydrogen 95.9 0.1 2.2E-06 53.7 12.3 69 97-181 1-69 (359)
141 PRK06728 aspartate-semialdehyd 95.8 0.051 1.1E-06 55.6 9.8 75 94-181 3-77 (347)
142 PLN02650 dihydroflavonol-4-red 95.8 0.057 1.2E-06 54.7 10.1 116 96-223 5-128 (351)
143 PRK10675 UDP-galactose-4-epime 95.8 0.096 2.1E-06 52.5 11.6 116 97-223 1-124 (338)
144 PRK11559 garR tartronate semia 95.8 0.046 1E-06 54.3 9.0 65 96-180 2-66 (296)
145 PLN02662 cinnamyl-alcohol dehy 95.7 0.068 1.5E-06 53.1 10.2 115 96-222 4-126 (322)
146 PRK13304 L-aspartate dehydroge 95.7 0.078 1.7E-06 52.2 10.2 70 96-181 1-70 (265)
147 PLN02383 aspartate semialdehyd 95.7 0.05 1.1E-06 55.7 9.1 73 95-181 6-78 (344)
148 PRK15461 NADH-dependent gamma- 95.7 0.042 9.2E-07 54.9 8.5 65 96-180 1-65 (296)
149 PLN02214 cinnamoyl-CoA reducta 95.7 0.069 1.5E-06 54.2 10.1 109 96-222 10-126 (342)
150 PRK05671 aspartate-semialdehyd 95.7 0.068 1.5E-06 54.6 9.9 74 94-181 2-75 (336)
151 cd01487 E1_ThiF_like E1_ThiF_l 95.6 0.029 6.3E-07 51.8 6.6 32 98-134 1-32 (174)
152 PRK08267 short chain dehydroge 95.6 0.042 9E-07 52.9 8.0 117 96-224 1-137 (260)
153 PF02719 Polysacc_synt_2: Poly 95.6 0.014 3.1E-07 58.2 4.7 122 99-229 1-139 (293)
154 cd00757 ThiF_MoeB_HesA_family 95.6 0.057 1.2E-06 51.8 8.8 79 96-181 21-120 (228)
155 PF02558 ApbA: Ketopantoate re 95.6 0.068 1.5E-06 47.3 8.7 121 99-249 1-125 (151)
156 PF00899 ThiF: ThiF family; I 95.5 0.04 8.7E-07 48.3 6.8 78 97-181 3-101 (135)
157 PRK08269 3-hydroxybutyryl-CoA 95.5 0.053 1.2E-06 54.8 8.6 54 159-228 64-119 (314)
158 PRK11908 NAD-dependent epimera 95.5 0.032 7E-07 56.4 7.0 107 96-223 1-118 (347)
159 cd01065 NAD_bind_Shikimate_DH 95.4 0.067 1.4E-06 47.5 7.9 74 96-183 19-92 (155)
160 TIGR01777 yfcH conserved hypot 95.4 0.033 7.2E-07 54.2 6.5 96 99-211 1-100 (292)
161 PF01113 DapB_N: Dihydrodipico 95.4 0.055 1.2E-06 47.0 7.1 74 97-179 1-74 (124)
162 PRK07102 short chain dehydroge 95.4 0.15 3.3E-06 48.4 10.8 46 96-150 1-46 (243)
163 PLN02989 cinnamyl-alcohol dehy 95.4 0.1 2.3E-06 52.0 10.1 116 96-223 5-129 (325)
164 TIGR03466 HpnA hopanoid-associ 95.4 0.044 9.6E-07 54.3 7.3 111 97-223 1-113 (328)
165 PRK08125 bifunctional UDP-gluc 95.3 0.05 1.1E-06 60.4 8.2 109 94-223 313-432 (660)
166 PRK08040 putative semialdehyde 95.3 0.086 1.9E-06 53.8 9.2 73 95-181 3-75 (336)
167 COG4221 Short-chain alcohol de 95.3 0.11 2.3E-06 50.4 9.3 115 97-223 7-140 (246)
168 PRK11150 rfaD ADP-L-glycero-D- 95.3 0.12 2.6E-06 51.1 10.1 108 99-223 2-116 (308)
169 PLN02896 cinnamyl-alcohol dehy 95.2 0.27 5.9E-06 49.8 12.7 113 96-223 10-138 (353)
170 KOG2711 Glycerol-3-phosphate d 95.2 0.12 2.6E-06 52.3 9.6 131 93-242 18-167 (372)
171 cd01483 E1_enzyme_family Super 95.2 0.18 4E-06 44.4 10.0 77 98-181 1-98 (143)
172 PLN02583 cinnamoyl-CoA reducta 95.2 0.14 3E-06 50.8 10.2 116 96-223 6-128 (297)
173 PRK10538 malonic semialdehyde 95.2 0.07 1.5E-06 51.1 7.7 113 97-224 1-135 (248)
174 COG1086 Predicted nucleoside-d 95.2 0.26 5.6E-06 53.1 12.4 124 95-229 249-387 (588)
175 PLN02240 UDP-glucose 4-epimera 95.1 0.31 6.7E-06 49.0 12.7 117 96-223 5-132 (352)
176 PRK07231 fabG 3-ketoacyl-(acyl 95.1 0.29 6.3E-06 46.4 11.8 46 96-150 5-50 (251)
177 PRK14874 aspartate-semialdehyd 95.1 0.11 2.4E-06 52.9 9.3 72 96-181 1-72 (334)
178 PRK06196 oxidoreductase; Provi 95.1 0.29 6.2E-06 48.9 12.2 114 96-223 26-156 (315)
179 PRK12939 short chain dehydroge 95.1 0.26 5.6E-06 46.7 11.4 75 96-183 7-95 (250)
180 COG0136 Asd Aspartate-semialde 95.1 0.071 1.5E-06 54.0 7.7 73 96-181 1-75 (334)
181 TIGR02622 CDP_4_6_dhtase CDP-g 95.1 0.11 2.3E-06 52.8 9.2 113 96-223 4-127 (349)
182 PRK08644 thiamine biosynthesis 95.1 0.084 1.8E-06 50.3 7.9 78 96-180 28-125 (212)
183 PRK12746 short chain dehydroge 95.1 0.4 8.7E-06 45.7 12.7 25 97-121 7-31 (254)
184 PRK07326 short chain dehydroge 95.1 0.37 8.1E-06 45.4 12.4 45 97-150 7-51 (237)
185 PRK07825 short chain dehydroge 95.1 0.39 8.5E-06 46.5 12.8 114 96-223 5-137 (273)
186 PRK13394 3-hydroxybutyrate deh 95.0 0.18 4E-06 48.2 10.2 114 96-223 7-144 (262)
187 PRK06194 hypothetical protein; 95.0 0.25 5.4E-06 48.2 11.2 46 96-150 6-51 (287)
188 PRK12490 6-phosphogluconate de 95.0 0.12 2.5E-06 51.7 8.9 64 97-180 1-67 (299)
189 PLN02572 UDP-sulfoquinovose sy 95.0 0.1 2.3E-06 55.1 8.9 27 95-121 46-72 (442)
190 PLN02968 Probable N-acetyl-gam 94.9 0.14 3E-06 53.2 9.6 27 95-121 37-63 (381)
191 PLN02712 arogenate dehydrogena 94.9 0.28 6E-06 54.7 12.5 93 94-223 50-144 (667)
192 PRK08265 short chain dehydroge 94.9 0.092 2E-06 50.8 7.8 45 96-149 6-50 (261)
193 TIGR03206 benzo_BadH 2-hydroxy 94.9 0.35 7.7E-06 45.8 11.7 113 96-223 3-139 (250)
194 PRK12480 D-lactate dehydrogena 94.9 0.089 1.9E-06 53.5 7.9 89 97-223 147-235 (330)
195 PLN02350 phosphogluconate dehy 94.8 0.12 2.7E-06 55.3 9.2 102 95-224 5-109 (493)
196 PRK14806 bifunctional cyclohex 94.8 0.25 5.4E-06 55.5 12.1 95 97-223 4-98 (735)
197 PRK11199 tyrA bifunctional cho 94.8 0.11 2.4E-06 53.8 8.5 79 96-223 98-176 (374)
198 cd01078 NAD_bind_H4MPT_DH NADP 94.8 0.12 2.5E-06 48.1 7.9 74 96-181 28-106 (194)
199 TIGR02356 adenyl_thiF thiazole 94.8 0.12 2.6E-06 48.8 7.9 79 96-181 21-120 (202)
200 PRK08339 short chain dehydroge 94.8 0.54 1.2E-05 45.6 12.8 114 97-224 9-145 (263)
201 TIGR01035 hemA glutamyl-tRNA r 94.7 0.075 1.6E-06 55.8 7.2 104 96-228 180-283 (417)
202 PLN02986 cinnamyl-alcohol dehy 94.7 0.5 1.1E-05 47.1 12.8 113 96-222 5-127 (322)
203 TIGR02371 ala_DH_arch alanine 94.7 0.12 2.6E-06 52.4 8.2 75 94-180 126-200 (325)
204 PRK07806 short chain dehydroge 94.7 0.24 5.2E-06 47.1 9.9 25 97-121 7-31 (248)
205 PRK08213 gluconate 5-dehydroge 94.7 0.47 1E-05 45.5 12.0 115 96-223 12-149 (259)
206 PRK06180 short chain dehydroge 94.6 0.17 3.7E-06 49.4 9.0 26 96-121 4-29 (277)
207 PRK09599 6-phosphogluconate de 94.6 0.13 2.9E-06 51.3 8.4 63 97-179 1-66 (301)
208 TIGR01214 rmlD dTDP-4-dehydror 94.6 0.11 2.3E-06 50.8 7.6 96 98-223 1-100 (287)
209 TIGR00873 gnd 6-phosphoglucona 94.6 0.097 2.1E-06 55.8 7.7 102 98-229 1-107 (467)
210 PRK12827 short chain dehydroge 94.6 0.61 1.3E-05 44.0 12.6 119 96-224 6-148 (249)
211 cd05311 NAD_bind_2_malic_enz N 94.6 0.29 6.2E-06 47.1 10.2 101 96-226 25-132 (226)
212 PRK12429 3-hydroxybutyrate deh 94.6 0.44 9.5E-06 45.4 11.5 113 96-223 4-140 (258)
213 PRK06153 hypothetical protein; 94.6 0.061 1.3E-06 55.6 5.7 54 75-133 152-208 (393)
214 PRK05650 short chain dehydroge 94.5 0.51 1.1E-05 45.7 12.0 112 97-223 1-136 (270)
215 COG0569 TrkA K+ transport syst 94.5 0.041 8.9E-07 52.9 4.2 69 97-181 1-75 (225)
216 PRK07478 short chain dehydroge 94.5 0.65 1.4E-05 44.4 12.5 113 96-223 6-143 (254)
217 PRK07814 short chain dehydroge 94.5 0.39 8.4E-06 46.4 11.0 114 96-223 10-147 (263)
218 PRK07069 short chain dehydroge 94.5 0.62 1.3E-05 44.2 12.3 114 98-224 1-139 (251)
219 PRK13302 putative L-aspartate 94.5 0.25 5.5E-06 48.8 9.8 72 95-181 5-76 (271)
220 PRK05479 ketol-acid reductoiso 94.4 0.19 4.1E-06 51.1 9.0 66 95-180 16-81 (330)
221 PRK09987 dTDP-4-dehydrorhamnos 94.4 0.096 2.1E-06 52.0 6.8 99 97-222 1-103 (299)
222 cd01485 E1-1_like Ubiquitin ac 94.4 0.23 5E-06 46.7 8.9 77 97-180 20-121 (198)
223 PRK06901 aspartate-semialdehyd 94.4 0.21 4.6E-06 50.5 9.0 69 96-181 3-73 (322)
224 PRK07024 short chain dehydroge 94.4 0.36 7.9E-06 46.4 10.5 45 96-149 2-46 (257)
225 PRK00258 aroE shikimate 5-dehy 94.3 0.19 4.1E-06 49.7 8.6 75 96-184 123-197 (278)
226 PLN02780 ketoreductase/ oxidor 94.3 0.54 1.2E-05 47.4 12.0 47 96-151 53-99 (320)
227 PRK05653 fabG 3-ketoacyl-(acyl 94.3 0.48 1E-05 44.5 11.0 46 96-150 5-50 (246)
228 cd05312 NAD_bind_1_malic_enz N 94.3 0.037 8E-07 54.9 3.4 133 97-254 26-173 (279)
229 PRK12744 short chain dehydroge 94.3 0.66 1.4E-05 44.5 12.1 25 97-121 9-33 (257)
230 PRK05866 short chain dehydroge 94.3 0.48 1.1E-05 46.9 11.5 112 97-223 41-178 (293)
231 PRK08085 gluconate 5-dehydroge 94.3 0.37 7.9E-06 46.1 10.3 47 96-151 9-55 (254)
232 PRK08291 ectoine utilization p 94.3 0.16 3.4E-06 51.6 8.1 75 95-180 131-205 (330)
233 PRK13940 glutamyl-tRNA reducta 94.3 0.089 1.9E-06 55.2 6.3 73 96-183 181-253 (414)
234 PRK12937 short chain dehydroge 94.2 0.15 3.2E-06 48.3 7.4 27 95-121 4-30 (245)
235 PRK08643 acetoin reductase; Va 94.2 0.64 1.4E-05 44.4 11.9 114 97-224 3-140 (256)
236 PLN00141 Tic62-NAD(P)-related 94.2 0.094 2E-06 50.5 6.1 27 95-121 16-42 (251)
237 PRK07424 bifunctional sterol d 94.2 0.26 5.7E-06 51.6 9.8 102 96-210 178-290 (406)
238 PRK07904 short chain dehydroge 94.2 0.6 1.3E-05 45.1 11.7 116 95-223 7-146 (253)
239 PRK07454 short chain dehydroge 94.2 0.78 1.7E-05 43.4 12.3 115 95-224 5-143 (241)
240 PRK08340 glucose-1-dehydrogena 94.2 0.66 1.4E-05 44.6 11.9 73 97-183 1-87 (259)
241 PRK00045 hemA glutamyl-tRNA re 94.2 0.17 3.6E-06 53.3 8.3 106 95-228 181-286 (423)
242 KOG0409 Predicted dehydrogenas 94.2 0.14 3.1E-06 51.0 7.1 101 96-219 35-152 (327)
243 PRK07523 gluconate 5-dehydroge 94.2 0.6 1.3E-05 44.7 11.5 114 96-224 10-147 (255)
244 PLN02657 3,8-divinyl protochlo 94.2 0.8 1.7E-05 47.6 13.2 28 94-121 58-85 (390)
245 PRK12825 fabG 3-ketoacyl-(acyl 94.1 1.1 2.3E-05 42.1 13.0 27 95-121 5-31 (249)
246 PRK06181 short chain dehydroge 94.1 0.79 1.7E-05 44.0 12.3 74 97-183 2-89 (263)
247 PRK05565 fabG 3-ketoacyl-(acyl 94.1 1.1 2.4E-05 42.2 13.0 26 96-121 5-30 (247)
248 PRK12475 thiamine/molybdopteri 94.1 0.17 3.8E-06 51.6 7.8 79 96-181 24-125 (338)
249 PRK07774 short chain dehydroge 94.0 0.61 1.3E-05 44.3 11.2 26 96-121 6-31 (250)
250 PRK09186 flagellin modificatio 94.0 0.81 1.8E-05 43.6 12.1 45 96-149 4-48 (256)
251 PRK06101 short chain dehydroge 94.0 0.17 3.8E-06 48.1 7.4 41 96-145 1-41 (240)
252 cd01491 Ube1_repeat1 Ubiquitin 94.0 0.24 5.2E-06 49.5 8.5 77 97-180 20-113 (286)
253 PRK07832 short chain dehydroge 94.0 0.99 2.1E-05 43.8 12.8 118 97-224 1-139 (272)
254 PRK07890 short chain dehydroge 94.0 0.86 1.9E-05 43.4 12.2 78 96-183 5-93 (258)
255 PRK08618 ornithine cyclodeamin 94.0 0.17 3.7E-06 51.3 7.6 76 95-181 126-201 (325)
256 TIGR01181 dTDP_gluc_dehyt dTDP 94.0 0.17 3.6E-06 49.7 7.5 113 98-222 1-124 (317)
257 TIGR01296 asd_B aspartate-semi 94.0 0.21 4.6E-06 51.0 8.4 70 98-181 1-70 (339)
258 PRK09072 short chain dehydroge 94.0 0.56 1.2E-05 45.2 10.9 74 96-183 5-91 (263)
259 PRK06128 oxidoreductase; Provi 94.0 1.1 2.4E-05 44.3 13.3 117 96-223 55-192 (300)
260 PLN00203 glutamyl-tRNA reducta 93.9 0.16 3.6E-06 54.7 7.7 73 96-181 266-338 (519)
261 PRK08664 aspartate-semialdehyd 93.9 0.3 6.5E-06 50.0 9.3 26 96-121 3-28 (349)
262 PRK15059 tartronate semialdehy 93.9 0.19 4.1E-06 50.2 7.7 63 97-180 1-63 (292)
263 PRK07453 protochlorophyllide o 93.9 0.55 1.2E-05 46.9 11.1 45 96-149 6-50 (322)
264 PRK06197 short chain dehydroge 93.9 0.64 1.4E-05 46.0 11.4 115 96-223 16-152 (306)
265 PLN02712 arogenate dehydrogena 93.9 0.61 1.3E-05 52.0 12.2 94 95-224 368-462 (667)
266 PRK08945 putative oxoacyl-(acy 93.8 1.2 2.6E-05 42.3 12.8 118 95-223 11-152 (247)
267 COG0451 WcaG Nucleoside-diphos 93.8 0.22 4.7E-06 48.9 7.8 100 98-210 2-105 (314)
268 PRK12747 short chain dehydroge 93.8 1.3 2.7E-05 42.3 13.0 26 96-121 4-29 (252)
269 PRK06182 short chain dehydroge 93.8 0.24 5.1E-06 48.1 7.9 110 96-223 3-133 (273)
270 PRK09291 short chain dehydroge 93.7 1.1 2.3E-05 42.8 12.3 25 97-121 3-27 (257)
271 PRK06141 ornithine cyclodeamin 93.7 0.23 4.9E-06 50.2 7.9 74 95-181 124-198 (314)
272 PRK00048 dihydrodipicolinate r 93.7 1.7 3.6E-05 42.6 13.8 67 96-179 1-67 (257)
273 PF01370 Epimerase: NAD depend 93.7 0.23 5.1E-06 46.5 7.6 111 99-223 1-116 (236)
274 PRK13301 putative L-aspartate 93.7 0.34 7.5E-06 47.7 8.8 96 97-226 3-99 (267)
275 PRK12384 sorbitol-6-phosphate 93.7 0.85 1.8E-05 43.6 11.6 116 97-224 3-142 (259)
276 PRK07109 short chain dehydroge 93.7 1.1 2.4E-05 45.3 13.0 112 97-223 9-144 (334)
277 TIGR02355 moeB molybdopterin s 93.6 0.35 7.6E-06 47.0 8.8 25 96-121 24-48 (240)
278 PRK05717 oxidoreductase; Valid 93.6 0.17 3.6E-06 48.6 6.5 26 96-121 10-35 (255)
279 PRK08223 hypothetical protein; 93.6 0.24 5.3E-06 49.4 7.7 33 96-133 27-59 (287)
280 PRK07688 thiamine/molybdopteri 93.6 0.23 5E-06 50.8 7.7 34 96-134 24-57 (339)
281 COG0373 HemA Glutamyl-tRNA red 93.6 0.16 3.4E-06 53.1 6.5 73 95-183 177-249 (414)
282 TIGR02197 heptose_epim ADP-L-g 93.5 0.43 9.4E-06 47.0 9.5 110 99-223 1-114 (314)
283 PRK06138 short chain dehydroge 93.5 0.93 2E-05 43.0 11.5 26 96-121 5-30 (252)
284 PRK07985 oxidoreductase; Provi 93.5 0.9 1.9E-05 45.0 11.7 25 97-121 50-74 (294)
285 TIGR01850 argC N-acetyl-gamma- 93.5 0.45 9.8E-06 48.7 9.8 25 97-121 1-25 (346)
286 PRK10217 dTDP-glucose 4,6-dehy 93.5 0.28 6.1E-06 49.5 8.3 103 96-210 1-114 (355)
287 cd01492 Aos1_SUMO Ubiquitin ac 93.5 0.17 3.7E-06 47.6 6.2 33 96-133 21-53 (197)
288 PF00185 OTCace: Aspartate/orn 93.5 0.56 1.2E-05 42.5 9.4 76 96-181 2-82 (158)
289 PRK06172 short chain dehydroge 93.5 0.85 1.9E-05 43.5 11.2 46 96-150 7-52 (253)
290 PRK06407 ornithine cyclodeamin 93.5 0.27 5.9E-06 49.4 8.0 74 95-179 116-189 (301)
291 PRK06482 short chain dehydroge 93.5 0.3 6.4E-06 47.5 8.1 25 97-121 3-27 (276)
292 PRK05867 short chain dehydroge 93.5 1.5 3.2E-05 41.9 12.8 75 96-183 9-97 (253)
293 TIGR02415 23BDH acetoin reduct 93.4 0.55 1.2E-05 44.7 9.8 111 98-222 2-136 (254)
294 PRK11863 N-acetyl-gamma-glutam 93.4 0.44 9.4E-06 48.2 9.3 26 96-121 2-27 (313)
295 PRK05993 short chain dehydroge 93.4 0.24 5.1E-06 48.4 7.2 26 96-121 4-29 (277)
296 TIGR02992 ectoine_eutC ectoine 93.4 0.29 6.3E-06 49.6 8.1 74 95-180 128-202 (326)
297 PF02423 OCD_Mu_crystall: Orni 93.4 0.25 5.3E-06 49.9 7.5 73 95-179 127-199 (313)
298 TIGR01809 Shik-DH-AROM shikima 93.4 0.2 4.3E-06 49.8 6.7 71 96-180 125-198 (282)
299 PRK06940 short chain dehydroge 93.4 0.91 2E-05 44.4 11.4 90 98-200 4-103 (275)
300 smart00859 Semialdhyde_dh Semi 93.4 0.39 8.5E-06 41.1 7.7 24 98-121 1-24 (122)
301 PRK08251 short chain dehydroge 93.3 1.6 3.5E-05 41.3 12.8 77 97-184 3-93 (248)
302 PRK05690 molybdopterin biosynt 93.3 0.32 6.9E-06 47.4 8.0 25 96-121 32-56 (245)
303 PRK06718 precorrin-2 dehydroge 93.3 0.3 6.4E-06 46.2 7.5 68 96-181 10-79 (202)
304 PRK00436 argC N-acetyl-gamma-g 93.3 0.44 9.4E-06 48.8 9.3 26 96-121 2-27 (343)
305 PRK06139 short chain dehydroge 93.3 0.87 1.9E-05 46.2 11.4 75 96-183 7-95 (330)
306 cd00762 NAD_bind_malic_enz NAD 93.3 0.07 1.5E-06 52.2 3.3 134 97-254 26-174 (254)
307 PRK05884 short chain dehydroge 93.3 0.35 7.5E-06 45.8 7.9 43 97-148 1-43 (223)
308 PRK12936 3-ketoacyl-(acyl-carr 93.2 0.37 8E-06 45.5 8.1 111 96-224 6-140 (245)
309 PRK12829 short chain dehydroge 93.2 1.9 4.1E-05 41.1 13.2 27 95-121 10-36 (264)
310 PRK07666 fabG 3-ketoacyl-(acyl 93.2 1.8 4E-05 40.8 12.9 75 96-183 7-95 (239)
311 PRK07067 sorbitol dehydrogenas 93.2 0.46 9.9E-06 45.5 8.8 44 97-149 7-50 (257)
312 PRK12826 3-ketoacyl-(acyl-carr 93.2 1.3 2.9E-05 41.7 11.9 46 96-150 6-51 (251)
313 PLN02253 xanthoxin dehydrogena 93.2 2 4.3E-05 41.7 13.3 26 96-121 18-43 (280)
314 PRK08219 short chain dehydroge 93.1 0.49 1.1E-05 44.0 8.7 24 96-119 3-26 (227)
315 PRK06124 gluconate 5-dehydroge 93.1 1.3 2.8E-05 42.3 11.8 47 95-150 10-56 (256)
316 PRK05876 short chain dehydroge 93.1 1 2.2E-05 44.1 11.3 113 97-223 7-143 (275)
317 PRK09242 tropinone reductase; 93.1 1.5 3.3E-05 41.9 12.3 115 96-223 9-147 (257)
318 PRK08818 prephenate dehydrogen 93.1 0.49 1.1E-05 49.0 9.3 86 96-223 4-89 (370)
319 PRK07340 ornithine cyclodeamin 93.1 0.29 6.2E-06 49.2 7.4 72 95-180 124-196 (304)
320 TIGR00465 ilvC ketol-acid redu 93.1 0.5 1.1E-05 47.8 9.1 65 96-180 3-67 (314)
321 PRK05557 fabG 3-ketoacyl-(acyl 93.0 1.9 4.2E-05 40.4 12.7 27 95-121 4-30 (248)
322 TIGR03325 BphB_TodD cis-2,3-di 93.0 0.17 3.8E-06 48.7 5.6 26 96-121 5-30 (262)
323 PRK12828 short chain dehydroge 93.0 0.59 1.3E-05 43.7 9.1 26 96-121 7-32 (239)
324 PRK07074 short chain dehydroge 93.0 1.8 3.9E-05 41.3 12.6 44 97-149 3-46 (257)
325 PLN02260 probable rhamnose bio 93.0 1.1 2.4E-05 49.7 12.5 97 94-221 378-479 (668)
326 PRK08063 enoyl-(acyl carrier p 92.9 1.9 4.2E-05 40.8 12.7 25 97-121 5-29 (250)
327 PRK05597 molybdopterin biosynt 92.9 0.27 5.8E-06 50.6 7.1 79 96-181 28-127 (355)
328 PRK06125 short chain dehydroge 92.9 2 4.3E-05 41.2 12.8 114 96-223 7-140 (259)
329 TIGR00507 aroE shikimate 5-deh 92.9 0.54 1.2E-05 46.2 8.9 73 96-183 117-189 (270)
330 PRK07035 short chain dehydroge 92.9 1 2.2E-05 42.9 10.7 45 97-150 9-53 (252)
331 TIGR01472 gmd GDP-mannose 4,6- 92.8 0.41 8.9E-06 48.3 8.2 25 97-121 1-25 (343)
332 PRK05855 short chain dehydroge 92.8 0.98 2.1E-05 48.4 11.6 113 97-223 316-452 (582)
333 PRK07677 short chain dehydroge 92.8 2.4 5.2E-05 40.4 13.1 113 97-223 2-138 (252)
334 TIGR01724 hmd_rel H2-forming N 92.8 0.7 1.5E-05 46.8 9.5 59 108-181 31-90 (341)
335 PRK05875 short chain dehydroge 92.7 1.8 3.9E-05 41.9 12.4 46 96-150 7-52 (276)
336 PRK06198 short chain dehydroge 92.7 1.9 4E-05 41.2 12.3 26 96-121 6-31 (260)
337 PRK06823 ornithine cyclodeamin 92.7 0.48 1E-05 47.9 8.5 73 95-179 127-199 (315)
338 PRK07063 short chain dehydroge 92.7 1.9 4.1E-05 41.3 12.4 115 96-223 7-145 (260)
339 PF03435 Saccharop_dh: Sacchar 92.7 0.18 3.8E-06 52.1 5.5 73 99-182 1-77 (386)
340 PRK09135 pteridine reductase; 92.6 0.88 1.9E-05 42.9 9.8 25 97-121 7-31 (249)
341 PLN02686 cinnamoyl-CoA reducta 92.6 0.39 8.4E-06 49.3 7.8 108 94-211 51-169 (367)
342 PRK08263 short chain dehydroge 92.6 0.32 6.9E-06 47.3 6.9 25 97-121 4-28 (275)
343 PRK08703 short chain dehydroge 92.5 2.6 5.5E-05 39.8 12.9 44 97-149 7-50 (239)
344 PRK10084 dTDP-glucose 4,6 dehy 92.5 0.4 8.6E-06 48.4 7.7 103 97-211 1-114 (352)
345 PRK08277 D-mannonate oxidoredu 92.5 1.6 3.5E-05 42.3 11.8 46 96-150 10-55 (278)
346 KOG1430 C-3 sterol dehydrogena 92.5 0.37 8E-06 49.6 7.4 106 94-211 2-116 (361)
347 PRK05865 hypothetical protein; 92.5 0.2 4.3E-06 57.1 5.9 103 97-225 1-105 (854)
348 PLN02653 GDP-mannose 4,6-dehyd 92.5 1.1 2.4E-05 45.0 10.8 107 96-211 6-124 (340)
349 PRK15116 sulfur acceptor prote 92.4 0.41 8.8E-06 47.4 7.3 34 96-134 30-63 (268)
350 PRK07589 ornithine cyclodeamin 92.4 0.44 9.5E-06 48.9 7.8 73 96-180 129-201 (346)
351 PRK07201 short chain dehydroge 92.4 1.6 3.6E-05 47.9 12.9 103 97-211 1-115 (657)
352 cd00401 AdoHcyase S-adenosyl-L 92.4 0.55 1.2E-05 49.3 8.6 90 96-224 202-291 (413)
353 PRK07062 short chain dehydroge 92.4 2.2 4.8E-05 41.0 12.4 114 97-223 9-146 (265)
354 COG0289 DapB Dihydrodipicolina 92.4 0.75 1.6E-05 45.2 8.9 74 96-178 2-75 (266)
355 PRK06500 short chain dehydroge 92.4 0.61 1.3E-05 44.2 8.3 25 97-121 7-31 (249)
356 PRK08762 molybdopterin biosynt 92.4 0.44 9.6E-06 49.3 7.9 79 96-181 135-234 (376)
357 PF04321 RmlD_sub_bind: RmlD s 92.4 0.47 1E-05 47.0 7.8 98 97-222 1-100 (286)
358 PRK06200 2,3-dihydroxy-2,3-dih 92.4 0.45 9.8E-06 45.8 7.5 44 96-148 6-49 (263)
359 PRK08642 fabG 3-ketoacyl-(acyl 92.3 0.83 1.8E-05 43.3 9.2 26 96-121 5-30 (253)
360 PRK05872 short chain dehydroge 92.3 2.4 5.1E-05 41.9 12.7 46 96-150 9-54 (296)
361 PRK06924 short chain dehydroge 92.3 0.28 6E-06 46.7 5.8 26 96-121 1-26 (251)
362 PRK12742 oxidoreductase; Provi 92.2 0.94 2E-05 42.6 9.4 26 96-121 6-31 (237)
363 PRK06199 ornithine cyclodeamin 92.1 0.54 1.2E-05 48.8 8.2 76 95-179 154-230 (379)
364 PRK06914 short chain dehydroge 92.1 1.7 3.7E-05 42.2 11.3 25 97-121 4-28 (280)
365 TIGR02853 spore_dpaA dipicolin 92.1 0.72 1.6E-05 46.0 8.8 67 96-180 151-217 (287)
366 PRK07574 formate dehydrogenase 92.1 0.55 1.2E-05 48.9 8.2 92 97-222 193-284 (385)
367 PRK06947 glucose-1-dehydrogena 92.1 1.9 4.2E-05 40.8 11.5 25 97-121 3-27 (248)
368 PRK06113 7-alpha-hydroxysteroi 92.1 1.9 4.1E-05 41.2 11.5 46 96-150 11-56 (255)
369 PRK07576 short chain dehydroge 92.1 1.7 3.8E-05 42.0 11.3 46 96-150 9-54 (264)
370 PRK06701 short chain dehydroge 92.1 0.54 1.2E-05 46.5 7.8 136 76-223 22-182 (290)
371 PRK08324 short chain dehydroge 92.0 2 4.4E-05 48.0 13.1 45 97-150 423-467 (681)
372 PRK13303 L-aspartate dehydroge 92.0 1.2 2.7E-05 43.8 10.1 25 96-121 1-25 (265)
373 cd00755 YgdL_like Family of ac 92.0 0.39 8.4E-06 46.5 6.4 33 96-133 11-43 (231)
374 PRK08589 short chain dehydroge 92.0 3.1 6.7E-05 40.4 13.0 115 96-224 6-142 (272)
375 PRK14027 quinate/shikimate deh 92.0 0.47 1E-05 47.3 7.2 74 96-180 127-202 (283)
376 PRK07097 gluconate 5-dehydroge 92.0 2.3 4.9E-05 41.0 11.9 114 96-224 10-147 (265)
377 PRK06179 short chain dehydroge 92.0 1.5 3.3E-05 42.2 10.7 26 96-121 4-29 (270)
378 TIGR01963 PHB_DH 3-hydroxybuty 91.9 2.2 4.8E-05 40.3 11.7 25 97-121 2-26 (255)
379 PRK06057 short chain dehydroge 91.9 2.6 5.7E-05 40.2 12.3 26 96-121 7-32 (255)
380 COG0677 WecC UDP-N-acetyl-D-ma 91.9 0.94 2E-05 47.0 9.3 78 96-184 9-96 (436)
381 TIGR03736 PRTRC_ThiF PRTRC sys 91.9 2.2 4.8E-05 41.6 11.6 27 94-121 9-35 (244)
382 PRK08300 acetaldehyde dehydrog 91.9 2 4.2E-05 43.3 11.5 25 95-120 3-27 (302)
383 PRK05476 S-adenosyl-L-homocyst 91.9 0.57 1.2E-05 49.3 8.0 92 95-225 211-302 (425)
384 PRK05786 fabG 3-ketoacyl-(acyl 91.9 3.5 7.5E-05 38.7 12.8 25 97-121 6-30 (238)
385 PRK05599 hypothetical protein; 91.8 1.5 3.2E-05 42.0 10.4 113 98-224 2-138 (246)
386 PRK12935 acetoacetyl-CoA reduc 91.8 2.3 5.1E-05 40.2 11.7 26 96-121 6-31 (247)
387 PLN02260 probable rhamnose bio 91.8 0.67 1.5E-05 51.5 8.9 114 96-223 6-132 (668)
388 PRK08862 short chain dehydroge 91.8 3.5 7.5E-05 39.2 12.8 46 96-150 5-50 (227)
389 PRK12320 hypothetical protein; 91.7 0.29 6.4E-06 54.6 6.0 100 97-222 1-101 (699)
390 PRK05600 thiamine biosynthesis 91.7 0.58 1.3E-05 48.4 7.8 79 96-181 41-140 (370)
391 PRK08416 7-alpha-hydroxysteroi 91.6 2.4 5.1E-05 40.8 11.6 47 96-150 8-54 (260)
392 PRK15469 ghrA bifunctional gly 91.6 0.57 1.2E-05 47.4 7.4 90 97-222 137-226 (312)
393 PRK12743 oxidoreductase; Provi 91.6 4.8 0.0001 38.5 13.6 25 97-121 3-27 (256)
394 TIGR01832 kduD 2-deoxy-D-gluco 91.6 2.9 6.3E-05 39.6 12.0 26 96-121 5-30 (248)
395 PRK12557 H(2)-dependent methyl 91.5 1.2 2.5E-05 45.7 9.7 56 109-179 32-88 (342)
396 PRK12823 benD 1,6-dihydroxycyc 91.5 3 6.5E-05 39.9 12.1 26 96-121 8-33 (260)
397 PF00106 adh_short: short chai 91.5 3.7 8.1E-05 36.2 12.0 114 98-225 2-137 (167)
398 PLN03129 NADP-dependent malic 91.5 0.17 3.8E-06 54.8 3.7 131 97-254 322-469 (581)
399 COG1090 Predicted nucleoside-d 91.5 1.1 2.4E-05 44.4 8.9 94 99-211 1-99 (297)
400 KOG1201 Hydroxysteroid 17-beta 91.4 1.6 3.6E-05 43.6 10.2 117 96-223 38-173 (300)
401 TIGR01692 HIBADH 3-hydroxyisob 91.4 0.64 1.4E-05 46.1 7.6 61 101-181 1-61 (288)
402 PRK08264 short chain dehydroge 91.4 0.41 9E-06 45.1 5.9 26 96-121 6-31 (238)
403 PF03949 Malic_M: Malic enzyme 91.3 0.94 2E-05 44.5 8.3 131 97-249 26-169 (255)
404 PRK13243 glyoxylate reductase; 91.3 0.35 7.5E-06 49.3 5.6 90 97-222 151-240 (333)
405 PRK09134 short chain dehydroge 91.3 2.5 5.5E-05 40.4 11.4 26 96-121 9-34 (258)
406 PRK06949 short chain dehydroge 91.2 0.64 1.4E-05 44.3 7.1 46 96-150 9-54 (258)
407 KOG4777 Aspartate-semialdehyde 91.2 0.17 3.6E-06 49.4 2.9 79 97-181 4-86 (361)
408 PRK05693 short chain dehydroge 91.2 3.4 7.4E-05 39.9 12.3 26 96-121 1-26 (274)
409 TIGR01179 galE UDP-glucose-4-e 91.1 1.9 4.2E-05 42.3 10.6 109 98-222 1-120 (328)
410 PRK07060 short chain dehydroge 91.1 2.5 5.3E-05 39.8 11.0 26 96-121 9-34 (245)
411 TIGR00936 ahcY adenosylhomocys 91.0 0.79 1.7E-05 48.0 8.0 91 95-224 194-284 (406)
412 PRK07878 molybdopterin biosynt 91.0 0.73 1.6E-05 48.0 7.7 25 96-121 42-66 (392)
413 PRK07411 hypothetical protein; 91.0 0.75 1.6E-05 47.9 7.8 79 96-181 38-137 (390)
414 cd01075 NAD_bind_Leu_Phe_Val_D 90.9 0.71 1.5E-05 43.5 6.9 66 96-181 28-94 (200)
415 PRK06077 fabG 3-ketoacyl-(acyl 90.9 2.9 6.2E-05 39.6 11.2 26 96-121 6-31 (252)
416 PRK08628 short chain dehydroge 90.8 4.8 0.0001 38.3 12.8 25 97-121 8-32 (258)
417 PF02826 2-Hacid_dh_C: D-isome 90.8 1 2.2E-05 41.4 7.8 93 96-224 36-129 (178)
418 KOG1014 17 beta-hydroxysteroid 90.7 0.36 7.9E-06 48.3 4.9 114 99-224 52-188 (312)
419 PRK06935 2-deoxy-D-gluconate 3 90.7 0.78 1.7E-05 44.0 7.2 26 96-121 15-40 (258)
420 PRK07201 short chain dehydroge 90.7 2.4 5.2E-05 46.6 11.9 113 96-223 371-509 (657)
421 PRK08226 short chain dehydroge 90.7 2.1 4.6E-05 41.0 10.2 26 96-121 6-31 (263)
422 cd01489 Uba2_SUMO Ubiquitin ac 90.7 0.87 1.9E-05 46.0 7.7 31 98-133 1-31 (312)
423 KOG1429 dTDP-glucose 4-6-dehyd 90.6 0.38 8.3E-06 47.8 4.8 74 96-181 27-100 (350)
424 COG0002 ArgC Acetylglutamate s 90.6 0.52 1.1E-05 48.0 6.0 27 95-121 1-27 (349)
425 PLN02494 adenosylhomocysteinas 90.6 0.71 1.5E-05 49.1 7.2 93 96-227 254-346 (477)
426 COG0078 ArgF Ornithine carbamo 90.5 1.4 3E-05 44.1 8.7 76 95-179 152-228 (310)
427 TIGR03693 ocin_ThiF_like putat 90.5 0.88 1.9E-05 49.8 7.9 83 95-183 128-215 (637)
428 PRK08936 glucose-1-dehydrogena 90.5 4.1 8.8E-05 39.1 12.0 26 96-121 7-32 (261)
429 COG1091 RfbD dTDP-4-dehydrorha 90.4 0.71 1.5E-05 45.9 6.6 95 97-222 1-99 (281)
430 PF01408 GFO_IDH_MocA: Oxidore 90.4 0.73 1.6E-05 38.8 6.0 68 97-181 1-71 (120)
431 PRK13535 erythrose 4-phosphate 90.4 2.9 6.3E-05 42.7 11.2 25 96-121 1-25 (336)
432 PRK12749 quinate/shikimate deh 90.3 1.7 3.7E-05 43.4 9.3 73 96-180 124-204 (288)
433 PLN02928 oxidoreductase family 90.3 0.52 1.1E-05 48.3 5.8 102 97-222 160-262 (347)
434 PRK08217 fabG 3-ketoacyl-(acyl 90.3 4.7 0.0001 38.0 12.1 26 96-121 5-30 (253)
435 TIGR00978 asd_EA aspartate-sem 90.2 1.5 3.2E-05 44.8 9.0 26 97-122 1-26 (341)
436 COG2423 Predicted ornithine cy 90.2 0.77 1.7E-05 46.8 6.9 74 95-179 129-202 (330)
437 PRK08605 D-lactate dehydrogena 90.2 0.41 8.9E-06 48.7 4.9 63 96-180 146-208 (332)
438 PRK07775 short chain dehydroge 90.2 4.1 8.9E-05 39.6 11.9 26 96-121 10-35 (274)
439 cd01488 Uba3_RUB Ubiquitin act 89.9 0.68 1.5E-05 46.4 6.1 23 98-121 1-23 (291)
440 PRK08278 short chain dehydroge 89.9 5.1 0.00011 39.0 12.3 26 96-121 6-31 (273)
441 PRK12824 acetoacetyl-CoA reduc 89.9 5.7 0.00012 37.3 12.3 25 97-121 3-27 (245)
442 TIGR01851 argC_other N-acetyl- 89.9 1.5 3.3E-05 44.3 8.5 25 97-121 2-26 (310)
443 PRK06046 alanine dehydrogenase 89.9 1 2.3E-05 45.6 7.6 74 95-180 128-201 (326)
444 TIGR01746 Thioester-redct thio 89.7 4.9 0.00011 40.0 12.3 117 98-222 1-135 (367)
445 PRK12367 short chain dehydroge 89.6 2.3 5E-05 41.1 9.5 25 97-121 15-39 (245)
446 PRK08306 dipicolinate synthase 89.6 1.7 3.6E-05 43.6 8.7 67 96-180 152-218 (296)
447 COG0169 AroE Shikimate 5-dehyd 89.5 1.7 3.6E-05 43.4 8.4 72 96-180 126-198 (283)
448 PF07991 IlvN: Acetohydroxy ac 89.4 0.7 1.5E-05 42.3 5.3 64 96-179 4-67 (165)
449 PRK04207 glyceraldehyde-3-phos 89.4 1.2 2.7E-05 45.4 7.8 78 96-181 1-87 (341)
450 PRK12938 acetyacetyl-CoA reduc 89.3 5.9 0.00013 37.4 11.9 25 97-121 4-28 (246)
451 COG1052 LdhA Lactate dehydroge 89.3 0.96 2.1E-05 46.0 6.7 63 96-180 146-208 (324)
452 PLN02858 fructose-bisphosphate 89.1 1.5 3.2E-05 52.9 9.2 67 95-181 323-389 (1378)
453 PF05368 NmrA: NmrA-like famil 89.0 1.9 4E-05 40.8 8.3 68 99-181 1-73 (233)
454 TIGR01829 AcAcCoA_reduct aceto 88.9 6.2 0.00013 36.9 11.7 24 98-121 2-25 (242)
455 COG4007 Predicted dehydrogenas 88.8 3.8 8.2E-05 40.3 10.0 88 96-210 1-109 (340)
456 PTZ00075 Adenosylhomocysteinas 88.8 0.91 2E-05 48.4 6.4 90 96-224 254-343 (476)
457 PRK06484 short chain dehydroge 88.7 1.2 2.5E-05 47.7 7.3 118 96-224 269-402 (520)
458 PF03059 NAS: Nicotianamine sy 88.7 1.7 3.6E-05 43.3 7.7 104 96-220 121-228 (276)
459 PRK01710 murD UDP-N-acetylmura 88.7 2.1 4.5E-05 45.4 9.1 118 90-225 8-126 (458)
460 PRK14851 hypothetical protein; 88.7 1.3 2.9E-05 49.4 7.8 33 96-133 43-75 (679)
461 PRK07877 hypothetical protein; 88.6 0.95 2.1E-05 50.8 6.7 33 96-133 107-139 (722)
462 PRK06114 short chain dehydroge 88.5 1.8 4E-05 41.4 7.9 26 96-121 8-33 (254)
463 PRK06523 short chain dehydroge 88.4 1.6 3.5E-05 41.7 7.4 25 97-121 10-34 (260)
464 PRK07831 short chain dehydroge 88.4 7 0.00015 37.4 11.9 46 96-150 17-63 (262)
465 PLN02358 glyceraldehyde-3-phos 88.4 3.2 7E-05 42.5 9.8 25 94-119 3-27 (338)
466 PRK08177 short chain dehydroge 88.3 0.94 2E-05 42.5 5.6 26 96-121 1-26 (225)
467 TIGR02632 RhaD_aldol-ADH rhamn 88.3 2 4.4E-05 48.0 9.1 45 97-150 415-459 (676)
468 TIGR03649 ergot_EASG ergot alk 88.3 0.47 1E-05 46.4 3.7 24 98-121 1-24 (285)
469 PRK06463 fabG 3-ketoacyl-(acyl 88.2 2.6 5.6E-05 40.3 8.7 26 96-121 7-32 (255)
470 PRK13529 malate dehydrogenase; 88.1 0.55 1.2E-05 50.9 4.2 138 97-254 296-450 (563)
471 PRK07856 short chain dehydroge 88.0 1.2 2.7E-05 42.5 6.3 26 96-121 6-31 (252)
472 PTZ00317 NADP-dependent malic 88.0 0.52 1.1E-05 50.9 4.0 136 97-254 298-449 (559)
473 PLN03139 formate dehydrogenase 88.0 1.6 3.5E-05 45.4 7.5 92 97-222 200-291 (386)
474 PLN02858 fructose-bisphosphate 87.9 2.1 4.6E-05 51.6 9.4 65 96-180 4-68 (1378)
475 PRK07889 enoyl-(acyl carrier p 87.9 3.4 7.3E-05 39.8 9.3 25 97-121 8-34 (256)
476 PRK12548 shikimate 5-dehydroge 87.8 1.8 3.9E-05 43.1 7.5 74 96-180 126-207 (289)
477 PRK07578 short chain dehydroge 87.7 1.7 3.7E-05 39.9 6.9 23 97-119 1-23 (199)
478 TIGR01289 LPOR light-dependent 87.7 5 0.00011 40.1 10.7 115 97-223 4-143 (314)
479 TIGR01327 PGDH D-3-phosphoglyc 87.7 1.2 2.6E-05 48.3 6.6 63 97-180 139-201 (525)
480 PRK15438 erythronate-4-phospha 87.7 0.98 2.1E-05 46.9 5.7 25 96-121 116-140 (378)
481 TIGR00036 dapB dihydrodipicoli 87.6 2.7 6E-05 41.3 8.6 25 96-120 1-25 (266)
482 PRK06398 aldose dehydrogenase; 87.5 0.74 1.6E-05 44.4 4.5 25 97-121 7-31 (258)
483 KOG2666 UDP-glucose/GDP-mannos 87.5 3.7 8.1E-05 41.5 9.2 81 96-185 1-91 (481)
484 TIGR01830 3oxo_ACP_reduc 3-oxo 87.4 4 8.6E-05 38.1 9.3 23 99-121 1-23 (239)
485 PRK14852 hypothetical protein; 87.4 1.6 3.4E-05 50.4 7.5 32 96-132 332-363 (989)
486 PRK00257 erythronate-4-phospha 87.4 1.5 3.3E-05 45.6 6.8 25 96-121 116-140 (381)
487 PRK09496 trkA potassium transp 87.3 1.8 4E-05 45.3 7.6 68 97-181 1-74 (453)
488 PRK09310 aroDE bifunctional 3- 87.2 1.5 3.2E-05 47.0 6.9 67 96-180 332-398 (477)
489 PRK07792 fabG 3-ketoacyl-(acyl 87.1 5.9 0.00013 39.4 10.8 26 96-121 12-37 (306)
490 TIGR01408 Ube1 ubiquitin-activ 87.0 4.7 0.0001 47.1 11.2 76 97-179 25-117 (1008)
491 PRK09730 putative NAD(P)-bindi 87.0 6.9 0.00015 36.7 10.8 25 97-121 2-26 (247)
492 PLN02306 hydroxypyruvate reduc 86.9 1.7 3.6E-05 45.4 6.9 20 97-117 166-185 (386)
493 PRK06719 precorrin-2 dehydroge 86.9 4.9 0.00011 36.4 9.1 67 96-181 13-79 (157)
494 PRK14106 murD UDP-N-acetylmura 86.8 2.4 5.1E-05 44.6 8.1 112 96-225 5-117 (450)
495 PRK06436 glycerate dehydrogena 86.8 0.93 2E-05 45.6 4.9 94 97-229 123-218 (303)
496 TIGR00518 alaDH alanine dehydr 86.6 0.95 2.1E-05 46.8 4.9 72 95-183 166-241 (370)
497 TIGR01532 E4PD_g-proteo D-eryt 86.4 5 0.00011 40.9 9.9 22 98-120 1-22 (325)
498 COG0111 SerA Phosphoglycerate 86.3 1.2 2.7E-05 45.2 5.5 62 97-179 143-204 (324)
499 KOG1203 Predicted dehydrogenas 86.2 1.2 2.6E-05 46.5 5.4 30 92-121 75-104 (411)
500 PRK08261 fabG 3-ketoacyl-(acyl 86.1 7.4 0.00016 40.8 11.5 25 97-121 211-235 (450)
No 1
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=2.5e-105 Score=824.94 Aligned_cols=435 Identities=83% Similarity=1.282 Sum_probs=406.1
Q ss_pred eeeecCCC-----ccccceeccccccccccccCccccccCCCCCCCCCCeeEEEeccc-ccccccccCCCCCCCCCccee
Q 013466 4 VAQLSPSS-----YTETTRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPTISCSVNQV-QAPVAVEQDDPKSKTNDCYGV 77 (442)
Q Consensus 4 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v 77 (442)
||+++++. .+++++++++|+++++++++.|+|+.|+|++|.++++|+|||+++ |+|+++++++++.| +|||||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (444)
T PLN00112 3 VAELSTPKVTSPFLNTSSRLRSSQLGLSRTHLSNHFRRALLPRRRATNARISCSVNQASQAPAAVQEKGVKTK-KECYGV 81 (444)
T ss_pred chhccccccccccccchhhccccccccccccccccccccccccccccccceeeccccccCCCccccccccccC-CCceEE
Confidence 56666553 568889999999999999999999999999999999999999999 88888888887666 999999
Q ss_pred eEEeecccchHHhhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc
Q 013466 78 FCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL 157 (442)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~ 157 (442)
||++||+++|++.+.|+++.||+||||+|+||+++++.|+.+++|+.||++.++++++|+++++++|++|||+|+.+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~ 161 (444)
T PLN00112 82 FCLTYDLKAEEETKSWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLL 161 (444)
T ss_pred EEEEEecccchhhhcCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999889999999999999999998888987777789999999999999999987776
Q ss_pred ccEEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCC
Q 013466 158 REVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP 237 (442)
Q Consensus 158 ~~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~ 237 (442)
.++++++++|++++|||+||+++|.||+|||+|.|++..|++|+++++++|+++++|++++|++|||||+||+++++.++
T Consensus 162 ~~v~i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg 241 (444)
T PLN00112 162 REVSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAP 241 (444)
T ss_pred CceEEecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcC
Confidence 67888899999999999999999999999999999999999999999999999546999999999999999999999998
Q ss_pred CCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHH
Q 013466 238 SIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317 (442)
Q Consensus 238 ~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~ 317 (442)
.+|+|+||+||.||++||+++||+++|+++++|++++||||||++|||+||+++|+|+|+.+++.+.+|+.+ ++.++
T Consensus 242 ~~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V~G~pl~e~i~~~~~~~~---ei~~~ 318 (444)
T PLN00112 242 NIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGLPVKEVITDHKWLEE---EFTPK 318 (444)
T ss_pred CCCcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEECCccHHHhhccccchHH---HHHHH
Confidence 787899999999999999999999999999999777999999999999999999999999999876666444 45556
Q ss_pred HhhhhHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCC
Q 013466 318 VRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIF 397 (442)
Q Consensus 318 v~~~g~eii~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L 397 (442)
++++|++|+++||+++|+++|.+++++|++|+.|+|+++|+|+|++++|++||+++|+|||+||++|++|+++++++++|
T Consensus 319 v~~~g~~Ii~~kG~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el~L 398 (444)
T PLN00112 319 VQKRGGVLIKKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDVEI 398 (444)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCCCC
Confidence 66799999999999998899999999999999988999999999999994499989999999999999999999966999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccC-CCCCCCCCCC
Q 013466 398 DDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDL-PEDTMLPGEM 442 (442)
Q Consensus 398 ~~~E~~~L~~sa~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 442 (442)
+++|+++|++|+++|.+|++|+.|++|+..+.|++ |+||||||||
T Consensus 399 ~~~E~~~l~~Sa~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (444)
T PLN00112 399 DDYLRERIKKSEAELLAEKRCVAHLTGEGGAFCDLRPEDTMLPGEM 444 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccccCCCCC
Confidence 99999999999999999999999999999999999 8999999998
No 2
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=5.1e-89 Score=694.45 Aligned_cols=384 Identities=77% Similarity=1.239 Sum_probs=355.6
Q ss_pred ccccccccccCCCCCCCCCcceeeEEeecccchHH--hhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEe
Q 013466 55 QVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEE--TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132 (442)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l 132 (442)
..|+|+.|.|++++.. +.|||||||+||++++.+ .+.|+++.||+||||+|+||+++++.|+.+++++++++|.|+|
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L 80 (387)
T TIGR01757 2 AKQVQAGVATAEAAAT-KKCYGVFCLSYDLKNEDKSLTKSWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKL 80 (387)
T ss_pred chhhhcccchhhHHhh-hcceEEEEEEeecCcchhHHHhcCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEE
Confidence 3588888777777764 899999999999999987 4557789999999988999999999999999999888999999
Q ss_pred ccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhh
Q 013466 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA 212 (442)
Q Consensus 133 ~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a 212 (442)
+|+|+++++++|++|||+|+.+++..++++++++|++++|||+||+++|.||+||++|.|++..|++|++++++.|++++
T Consensus 81 ~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a 160 (387)
T TIGR01757 81 LGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVA 160 (387)
T ss_pred eccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999866666788888999999999999999999999999999999999999999999999987
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccc
Q 013466 213 SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI 292 (442)
Q Consensus 213 ~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I 292 (442)
+|++++|++|||+|+||+++++.++.+|+|+||+||.||++||+++||+++++++++|+++|||||||++|||+||+++|
T Consensus 161 ~~~~iviVVsNPvDv~t~v~~k~sg~~~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a~V 240 (387)
T TIGR01757 161 SKNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKI 240 (387)
T ss_pred CCCeEEEEcCCcHHHHHHHHHHHcCCCcccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCCcEEecceeeEE
Confidence 79999999999999999999999987777999999999999999999999999999997569999999999999999999
Q ss_pred cCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCC
Q 013466 293 NGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIA 372 (442)
Q Consensus 293 ~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip 372 (442)
+|+|+.+++++..|. +.++.++++++|++|+++||+++|+++|.+++++|++|+.|+|+++++|+|++++|+.||++
T Consensus 241 ~G~pl~~~~~~~~~~---~~ei~~~v~~~g~eIi~~KG~t~~~s~a~ai~~~i~ai~~g~d~~~il~vsv~~~Ge~YGi~ 317 (387)
T TIGR01757 241 GGRPAKEVIKDTKWL---EEEFTPTVQKRGGALIKKWGRSSAASTAVSIADAIKSLVVPTPEGDWFSTGVYTDGNPYGIA 317 (387)
T ss_pred CCEEhHHhcccccch---HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCcccCCC
Confidence 999999987655554 34556667779999999999999888999999999999999899999999999999229998
Q ss_pred CceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCCCCC
Q 013466 373 EDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 442 (442)
Q Consensus 373 ~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (442)
+|+|||+||++|++|+++++.+++|+++|+++|++|+++|++|++++.+++++++..|-.|+|||+|||.
T Consensus 318 ~gv~~S~Pvvig~~Gv~~Iv~~l~L~~~E~~~l~~Sa~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (387)
T TIGR01757 318 EGLVFSMPCRSKGDGDYELATDVSMDDFLRERIRKSEDELLKEKECVAHLIGEGNAYCAVPEDTMLPGEN 387 (387)
T ss_pred CCEEEEEEEEEeCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCcccCCCCC
Confidence 9999999999999999999657999999999999999999999999999999999999999999999995
No 3
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.5e-70 Score=541.93 Aligned_cols=310 Identities=29% Similarity=0.437 Sum_probs=280.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-CcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~~~eal~dADi 175 (442)
+||+|||| |+||+++++.|+..++.++ +.| + |+++++++|.++||.|+.+.....+.++. ++|++++|||+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~e---l~L--i--Di~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDi 72 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSE---LVL--I--DINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADI 72 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccce---EEE--E--EcccccccchhcchhhcchhccCceEEecCCChhhhcCCCE
Confidence 59999997 9999999999976665433 555 3 44578999999999999866656677766 67999999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccchhhHHHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRA 255 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs~R~ 255 (442)
||++||.||||||+|.||+..|++|+++++++|+++| ||++++++|||+|+|||+++++++.+++|+||+||.||++||
T Consensus 73 VvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNPvD~~ty~~~k~sg~p~~rvig~gt~LDsaR~ 151 (313)
T COG0039 73 VVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARF 151 (313)
T ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCcHHHHHHHHHHhcCCCccceecccchHHHHHH
Confidence 9999999999999999999999999999999999996 999999999999999999999996544589999999999999
Q ss_pred HHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCchH
Q 013466 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAA 335 (442)
Q Consensus 256 ~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss~~ 335 (442)
+++||+++|+++++|+. ||+||||++|||+||+++|+|+|+.++++. +..+++++++++++++|++|++.||+++++
T Consensus 152 ~~~lae~~~v~~~~V~~-~ViGeHGdt~vp~~S~a~v~G~pl~~~~~~--~~~~~~~~i~~~v~~~g~eII~~kG~~t~~ 228 (313)
T COG0039 152 RTFLAEKLGVSPKDVHA-YVIGEHGDTMVPLWSQATVGGKPLEELLKE--DTEEDLEELIERVRNAGAEIIEAKGAGTYY 228 (313)
T ss_pred HHHHHHHhCCChhHcee-eEeccCCCceEEeeeeeeECCEEHHHHhhc--ccHhHHHHHHHHHHhhHHHHHHccCccchh
Confidence 99999999999999996 999999999999999999999999999864 334567888889999999999999775567
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHHH
Q 013466 336 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAE 415 (442)
Q Consensus 336 s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~ 415 (442)
++|.+++++.++|+ +|+++|+|+++|++| +|| ++|+|||+||++|++|+++++ ++.|+++|+++|++|++.|+++
T Consensus 229 ~~A~a~a~~~~ail--~d~~~vl~~s~~l~G-~yg-~~dv~~gvP~~lg~~Gv~~ii-e~~l~~~E~~~l~~s~~~lk~~ 303 (313)
T COG0039 229 GPAAALARMVEAIL--RDEKRVLPVSVYLDG-EYG-VEDVYFGVPAVLGKNGVEEIL-ELLLSDDEQEKLDKSAEELKKN 303 (313)
T ss_pred hHHHHHHHHHHHHH--cCCCceEEEEEeecC-ccC-cCCeEEEeeEEEcCCCcEEEe-cCCCCHHHHHHHHHHHHHHHHH
Confidence 79999999999999 578999999999999 799 589999999999999999999 6999999999999999999999
Q ss_pred HHHHHHhh
Q 013466 416 KKCVAHLT 423 (442)
Q Consensus 416 ~~~~~~~~ 423 (442)
++.+..+.
T Consensus 304 i~~~~~~~ 311 (313)
T COG0039 304 IELVKELV 311 (313)
T ss_pred HHHHHHhh
Confidence 99988765
No 4
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-70 Score=550.75 Aligned_cols=325 Identities=52% Similarity=0.837 Sum_probs=291.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (442)
|++|.||+||||+|+||+++++.|+..++++.++++.|+|+|+..++++++|+++||+|+.+++..++++++++|++++|
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 46789999999779999999999999999985566677777766566789999999999986665567888899999999
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhh
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LD 251 (442)
||+||+++|.|||||++|.|++..|++|+++++++|+++++|++++|++|||+|+||+++++.+|++|+ |+||+ |.||
T Consensus 81 aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LD 159 (326)
T PRK05442 81 ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAM-TRLD 159 (326)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEee-eHHH
Confidence 999999999999999999999999999999999999998768999999999999999999999977887 88999 9999
Q ss_pred HHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 252 s~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
++||+++||++++++|++|++.+||||||++|||+||+++|+|+|+.+++.+.+|. ..++.+++++++++|++.||+
T Consensus 160 s~R~r~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~~v~g~pl~~~~~~~~~~---~~~i~~~v~~~g~~Ii~~kG~ 236 (326)
T PRK05442 160 HNRALSQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHATIDGKPAAEVINDQAWL---EDTFIPTVQKRGAAIIEARGA 236 (326)
T ss_pred HHHHHHHHHHHhCcChHHeEEeEEEECCcCceeeccccCEECCEEHHHHccchhhH---HHHHHHHHHhhHHHHHhCcCC
Confidence 99999999999999999999745699999999999999999999999987543332 456667777799999999999
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
++|+.++..+++.+++|+.+.++++++|+|++++| +||+|+|+|||+||++| +|+++++.+++|+++|+++|++|++.
T Consensus 237 t~~~~a~~~~~~iv~ail~~~~~~~i~~~sv~~~g-~ygi~~~v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l~~s~~~ 314 (326)
T PRK05442 237 SSAASAANAAIDHVRDWVLGTPEGDWVSMGVPSDG-SYGIPEGLIFGFPVTCE-NGEYEIVQGLEIDDFSREKIDATLAE 314 (326)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecC-ccCCcCCeEEEEEEEEc-CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99875555568888888853228999999999999 89999999999999999 99999976799999999999999999
Q ss_pred HHHHHHHHHHhh
Q 013466 412 LLAEKKCVAHLT 423 (442)
Q Consensus 412 l~~~~~~~~~~~ 423 (442)
|+++++++.|++
T Consensus 315 l~~~~~~~~~~~ 326 (326)
T PRK05442 315 LEEERDAVKHLL 326 (326)
T ss_pred HHHHHHHHHhhC
Confidence 999999999874
No 5
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=1.6e-69 Score=543.06 Aligned_cols=320 Identities=58% Similarity=0.897 Sum_probs=286.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
+++.||+||||+|+||+++++.|+.+++++-++++.|+|+|+..+.++++|+++||+|+.+++..+++++.++|++++||
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~da 80 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDV 80 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCC
Confidence 46899999997799999999999999998855556677776655557799999999999866655677878999999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCC-CeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhh
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR-NVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p-~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LD 251 (442)
|+||+++|.||||||+|.|++..|++|+++++++|++++ | ++++|++|||+|+||+++++.++++|+ |+||+ |.||
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~-~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LD 158 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVA-KKDVKVLVVGNPANTNALIASKNAPDIPPKNFSAM-TRLD 158 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHH
Confidence 999999999999999999999999999999999999996 7 999999999999999999999955776 88997 9999
Q ss_pred HHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 252 s~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
++||+++||+++|++|++|++.+||||||++|+|+||+++|+|+|+.+++.+..|+ +.++.+++++++++|++.||+
T Consensus 159 s~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~pl~~~~~~~~~~---~~~i~~~v~~~g~~Ii~~kG~ 235 (323)
T TIGR01759 159 HNRAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKDDKWL---EGEFIPTVQQRGAAVIEARGA 235 (323)
T ss_pred HHHHHHHHHHHhCcChHHeEEeEEEecCCCceeeccccCEECCccHHHHhcchhhH---HHHHHHHHHhhHHHHHhccCC
Confidence 99999999999999999997667999999999999999999999999987653332 556777788899999999999
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
++|+++|.++++.+++|+.+.++++++|+|++++|++||+|+|+|||+||++|++|+++++++++|+++|+++|++|++.
T Consensus 236 t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l~L~~~E~~~l~~sa~~ 315 (323)
T TIGR01759 236 SSAASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKLDATEDE 315 (323)
T ss_pred cchHHHHHHHHHHHHHHHcCCCCCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHH
Confidence 99988889999999999953323899999999999559999999999999999999999995599999999999999999
Q ss_pred HHHHHHH
Q 013466 412 LLAEKKC 418 (442)
Q Consensus 412 l~~~~~~ 418 (442)
|++++++
T Consensus 316 lk~~~~~ 322 (323)
T TIGR01759 316 LLEEKEE 322 (323)
T ss_pred HHHHHhc
Confidence 9999865
No 6
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.7e-67 Score=543.65 Aligned_cols=317 Identities=30% Similarity=0.435 Sum_probs=288.7
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC
Q 013466 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (442)
Q Consensus 92 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~ 171 (442)
.++++.+|+|.||+|+||+++++.|+++.+|+.||+|.|+|+|++.++++++|++|||+|++++++.++.+++++|++++
T Consensus 119 ~~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~~~ea~~ 198 (452)
T cd05295 119 SKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFK 198 (452)
T ss_pred cCCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEECCHHHhC
Confidence 35668999999999999999999999999999999999999988778899999999999999887777888899999999
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCC--CeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccc
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR--NVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALT 248 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p--~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT 248 (442)
|||+||+++|.||+|||+|.|++..|++|+++++++|++++ | ++++|++|||+|+||++++++++++|+ |+||+||
T Consensus 199 daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a-~~~~~VlVv~tNPvD~~t~i~~k~apgiP~~rVig~gt 277 (452)
T cd05295 199 DAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNA-KEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVAR 277 (452)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEecc
Confidence 99999999999999999999999999999999999999996 7 889999999999999999999988987 7888888
Q ss_pred hhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccC------------cchhhhhhhccCChHHHHHHHH
Q 013466 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING------------LPVKEIIKDHKWLEEGFTETIQ 316 (442)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G------------~p~~~~i~~~~~~~~e~~~~~~ 316 (442)
||++|++++||+++|+++++|++++||||||++|||+||+++|+| +|+.+++.+..|..+++.+.++
T Consensus 278 -lds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~v~ 356 (452)
T cd05295 278 -LQENRAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATLK 356 (452)
T ss_pred -hHHHHHHHHHHHHhCcCHHHceeeEEEEccCCceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHHHHH
Confidence 779999999999999999999878999999999999999999987 9999998766665555555444
Q ss_pred HHhhhhHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCC
Q 013466 317 KVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVI 396 (442)
Q Consensus 317 ~v~~~g~eii~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~ 396 (442)
.+++ .++| ++++++|.++++++++|+.++++++|+|+||+++| +||+|+|++||+||+++++|++.+. +++
T Consensus 357 ---~rg~---~rkg-sT~~siA~A~~~iv~ail~~t~~~~ilsvsv~sdG-~YGip~gv~~S~Pviig~~Gve~V~-~L~ 427 (452)
T cd05295 357 ---SLSS---SLNH-EAAISPAHAIATTLSYWYHGSPPGEIFSLGVISEG-WYGIPEGIVFSMPVKFQNGSWEVVT-DLE 427 (452)
T ss_pred ---HHHH---hccC-ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeecc-ccCCcCCEEEEEEEEEeCCeEEEEe-CCC
Confidence 3666 4444 55677999999999999976556899999999999 7999999999999999999998887 799
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 013466 397 FDDYLRKRIAKTEQELLAEKKCV 419 (442)
Q Consensus 397 L~~~E~~~L~~sa~~l~~~~~~~ 419 (442)
|+++|+++|++|+++|.+|++.+
T Consensus 428 L~e~E~~kL~~S~~eL~~E~~~~ 450 (452)
T cd05295 428 LSEILREVLKRITSDLIQEKLVA 450 (452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999876
No 7
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=6.9e-68 Score=493.58 Aligned_cols=327 Identities=49% Similarity=0.722 Sum_probs=317.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (442)
|+++++|.|.||+|+||+++++.++.+.+|+.||||.|+++|+.+....++|+.|+|+||++|++..|..+++..++|+|
T Consensus 1 ~~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkd 80 (332)
T KOG1496|consen 1 MKEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKD 80 (332)
T ss_pred CCCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhhhcccChhhhhcc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccchhhH
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs 252 (442)
.|+.|+.++.||++||+|.|++..|.+|+++.++++++|++|+++||+++||+|+++.++.++++.+|.++|...|+||.
T Consensus 81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTRLDh 160 (332)
T KOG1496|consen 81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTRLDH 160 (332)
T ss_pred CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhhhhhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccC----cchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh
Q 013466 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING----LPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK 328 (442)
Q Consensus 253 ~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G----~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~ 328 (442)
+|+..+||.++|++.++|.+++|||||+.+|+|++.+++|++ +|+.+.++|+.|.+.+|.+.+++ ||..+|++
T Consensus 161 NRA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQk---RGaavi~a 237 (332)
T KOG1496|consen 161 NRALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQK---RGAAVIKA 237 (332)
T ss_pred hhHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHh---cchHhhhh
Confidence 999999999999999999999999999999999999999986 89999999999999999887776 99999999
Q ss_pred cCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHH
Q 013466 329 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKT 408 (442)
Q Consensus 329 kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~s 408 (442)
|+.+|++|+|.+++++|++|+.|+++++|++++||++|+ ||+|+|..||+||++.+ |-|+++..++++++-++++..+
T Consensus 238 rk~SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDGs-Ygip~gli~SfPv~~k~-g~wkiVqgl~iddf~r~km~~t 315 (332)
T KOG1496|consen 238 RKLSSAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDGS-YGIPDGLIFSFPVTIKN-GDWKIVQGLPIDDFSREKMDLT 315 (332)
T ss_pred hhhhhhhhHHHhHhhhhhheecCCCCccEEEEeeecCCC-CCCCCCeEEEcceEecC-CceEEEcCcchhHHHHHhhhhh
Confidence 999999999999999999999999999999999999995 99999999999999975 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 013466 409 EQELLAEKKCVAHLTG 424 (442)
Q Consensus 409 a~~l~~~~~~~~~~~~ 424 (442)
+++|.+|++++.++++
T Consensus 316 ~~EL~eEkd~a~~~l~ 331 (332)
T KOG1496|consen 316 AKELKEEKDLAYSCLS 331 (332)
T ss_pred HHHHHHhHHHHHHhhc
Confidence 9999999999998875
No 8
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=4.3e-67 Score=525.80 Aligned_cols=321 Identities=58% Similarity=0.905 Sum_probs=288.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+++||+||||+|+||+++++.|+.+++++.++++.|+|+|+..+.++++|+++||+|+.+++..++++++++|++++|||
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD 80 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDAD 80 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCC
Confidence 46899999977999999999999999998556777888877666777999999999998666556788889999999999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~ 253 (442)
+||+++|.||+||++|.|++..|++|+++++++|++++.|++++|++|||+|+||+++++.+|++|+ |+||+ |.||++
T Consensus 81 ivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~-t~LDs~ 159 (322)
T cd01338 81 WALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAM-TRLDHN 159 (322)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEe-hHHHHH
Confidence 9999999999999999999999999999999999999524999999999999999999999976876 88999 999999
Q ss_pred HHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCc
Q 013466 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333 (442)
Q Consensus 254 R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss 333 (442)
||++++|+++|+++++|++.+|||+||++++|+||+++++|+|+.+++.+.+|. +.++.+++++++++|+++||+++
T Consensus 160 Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~~~---~~~i~~~v~~~g~~Ii~~kG~t~ 236 (322)
T cd01338 160 RAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRAWL---EDEFIPTVQKRGAAIIKARGASS 236 (322)
T ss_pred HHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEECCEeHHHhcChHhhH---HHHHHHHHHhhHHHHHhCcCCcc
Confidence 999999999999999999756799999999999999999999998876543332 45666777789999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHH
Q 013466 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELL 413 (442)
Q Consensus 334 ~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~ 413 (442)
|+.++.++++.+++|+.+.+++.++|+|++++| +||+|+|+|||+||++|++|+++++ +++|+++|+++|++|++.|+
T Consensus 237 ~~~~a~a~~~iv~ail~~~~~~~i~~~sv~~~g-~yg~~~~v~~s~P~~ig~~Gv~~i~-~l~L~~~E~~~l~~s~~~l~ 314 (322)
T cd01338 237 AASAANAAIDHMRDWVLGTPEGDWFSMAVPSDG-SYGIPEGLIFSFPVRSKGGGYEIVE-GLEIDDFAREKIDATLAELL 314 (322)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEEEEEccC-ccCCCCCeEEEEEEEEeCCEEEEEe-CCCCCHHHHHHHHHHHHHHH
Confidence 875557899999999854333699999999999 8999999999999999999999998 69999999999999999999
Q ss_pred HHHHHHHH
Q 013466 414 AEKKCVAH 421 (442)
Q Consensus 414 ~~~~~~~~ 421 (442)
+|++.+.|
T Consensus 315 ~~~~~~~~ 322 (322)
T cd01338 315 EEREAVKH 322 (322)
T ss_pred HHHHHhhC
Confidence 99998765
No 9
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=5.6e-67 Score=521.76 Aligned_cols=301 Identities=21% Similarity=0.285 Sum_probs=269.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc--ccEEEecCcccccCCCcE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINPYELFEDAEW 175 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~--~~v~i~~~~~eal~dADi 175 (442)
||+|||| |+||+++|+.|+..+++++ +.|+ |+++++++|+++||+|+. ++. .++++++++|++++|||+
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~e---lvL~----Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~y~~~~~aDi 71 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSE---IVLI----DVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGDYDDCADADI 71 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCE---EEEE----eCCcchhhHHHHHHHhhh-ccCCCCCEEEEECCHHHhCCCCE
Confidence 7999996 9999999999999999875 6663 556788999999999986 333 357777889999999999
Q ss_pred EEEeCCcCCCCCCc--HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccchhhHH
Q 013466 176 ALLIGAKPRGPGME--RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDEN 253 (442)
Q Consensus 176 VIi~ag~~~kpg~~--r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs~ 253 (442)
||+++|.||||||+ |+|++..|++|+++++++|++++ |++++|++|||+|+||+++++.++..++|+||+||.||++
T Consensus 72 vvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPvDv~t~~~~k~sg~p~~rviG~gt~LDs~ 150 (307)
T cd05290 72 IVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPLDIAVYIAATEFDYPANKVIGTGTMLDTA 150 (307)
T ss_pred EEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcHHHHHHHHHHHhCcChhheecccchHHHH
Confidence 99999999999999 79999999999999999999996 9999999999999999999999954444999999999999
Q ss_pred HHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCc
Q 013466 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333 (442)
Q Consensus 254 R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss 333 (442)
||+++||+++|+++++|++ |||||||++|||+||+++|+|+|+.+++........+++++.++++++|++|++.||.++
T Consensus 151 R~~~~la~~l~v~~~~V~~-~ViGeHGds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~KG~t~ 229 (307)
T cd05290 151 RLRRIVADKYGVDPKNVTG-YVLGEHGSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRKGWTN 229 (307)
T ss_pred HHHHHHHHHhCCCcccEEE-EEEecCCCceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHccCeeh
Confidence 9999999999999999997 899999999999999999999999998753111223467788888889999999999988
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHH
Q 013466 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELL 413 (442)
Q Consensus 334 ~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~ 413 (442)
|+ .|.++++.+.+|+ .|++.++|+|++++| +|| ++|+|||+||++|++|+++++ +++|+++|+++|++|++.|+
T Consensus 230 ~~-ia~a~~~ii~ail--~d~~~v~~vsv~~~G-~yg-~~~v~~svP~~ig~~Gv~~i~-~l~L~~~E~~~l~~s~~~i~ 303 (307)
T cd05290 230 AG-IAKSASRLIKAIL--LDERSILPVCTLLSG-EYG-LSDVALSLPTVIGAKGIERVL-EIPLDEWELEKLHKSAKAIR 303 (307)
T ss_pred HH-HHHHHHHHHHHHH--hCCCeEEEEEEeeCC-ccC-CCCEEEEEEEEEeCCCceEec-CCCCCHHHHHHHHHHHHHHH
Confidence 75 5667777777777 578999999999999 799 589999999999999999999 59999999999999999998
Q ss_pred HH
Q 013466 414 AE 415 (442)
Q Consensus 414 ~~ 415 (442)
+.
T Consensus 304 ~~ 305 (307)
T cd05290 304 ET 305 (307)
T ss_pred HH
Confidence 74
No 10
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=5.6e-67 Score=525.19 Aligned_cols=317 Identities=50% Similarity=0.733 Sum_probs=283.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.||+||||+|+||+++++.|+.++++++++.+.|+|+|++.+.++++|+++||.|+.+++...++++.++|++++|||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 38999998899999999999999999876677787776654448899999999999766665667778899999999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHHH
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R~ 255 (442)
|++||.|++||++|.|++..|++|+++++++|+++|+|++++|++|||+|+||+++++.++.+|+ |+||+ |.||++||
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~vig~-t~LDs~R~ 159 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKNFTAL-TRLDHNRA 159 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHHHHHH
Confidence 99999999999999999999999999999999999559999999999999999999999965576 77866 99999999
Q ss_pred HHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChH-HHHHHHHHHhhhhHHHHHhcCCCch
Q 013466 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE-GFTETIQKVRLRGGLLIKKWGRSSA 334 (442)
Q Consensus 256 ~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~-e~~~~~~~v~~~g~eii~~kG~ss~ 334 (442)
|++||++++++|++|++++||||||++|+|+||+++|+|+|+.++... .++++ ..+++.+++++++++|+++||+++|
T Consensus 160 r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~~~~~~~~~-~~~~~~~~~~i~~~v~~~~~~Ii~~kg~t~~ 238 (323)
T cd00704 160 KAQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVVYGPGGTEWVLD-LLDEEWLNDEFVKTVQKRGAAIIKKRGASSA 238 (323)
T ss_pred HHHHHHHhCcCHHHceeeeEEecccCceeeccccceecCccHHHhccc-ccChHHHHHHHHHHHHhhHHHHHhccCcchh
Confidence 999999999999999767899999999999999999999999887532 12222 2456677788899999999999998
Q ss_pred HHHHHHHHHHHHHhhcCCCCC--cEEEEeeeeCCCcc-CCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 335 ASTAVSIVDAMKSLVTPTPEG--DWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 335 ~s~A~~i~~aI~~~l~~~d~~--~v~~~sv~~~G~~y-gip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
+++|.++++.+++|+. |++ +++|+|++++| +| |+|+|+|||+||++|++||++++ +++|+++|+++|++|++.
T Consensus 239 ~~~a~a~~~iv~ail~--~~~~~~v~~~s~~~~g-~y~gi~~~v~~s~P~~ig~~Gv~~v~-~l~L~~~E~~~l~~s~~~ 314 (323)
T cd00704 239 ASAAKAIADHVKDWLF--GTPPGEIVSMGVYSPG-NPYGIPPGIVFSFPCTCKGGGWHVVE-DLKLNDWLREKLKATEEE 314 (323)
T ss_pred HHHHHHHHHHHHHHHh--CCCCCcEEEEEEEeCC-ccCCCCCceEEEEEEEEcCCEEEEec-CCCCCHHHHHHHHHHHHH
Confidence 8789999999999995 555 99999999999 79 99999999999999999999988 799999999999999999
Q ss_pred HHHHHHHH
Q 013466 412 LLAEKKCV 419 (442)
Q Consensus 412 l~~~~~~~ 419 (442)
|+++++++
T Consensus 315 l~~~~~~~ 322 (323)
T cd00704 315 LIEEKEIA 322 (323)
T ss_pred HHHHHHhh
Confidence 99998875
No 11
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=1.2e-65 Score=515.82 Aligned_cols=318 Identities=47% Similarity=0.702 Sum_probs=281.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVI 177 (442)
||+||||+|+||+++++.|+.+++++.++++.|+|+|++.+.++++|+++||.|+.+++...+..++++|++++|||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 69999988999999999999999986334556777766656667999999999998655555554557799999999999
Q ss_pred EeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccchhhHHHHHH
Q 013466 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKC 257 (442)
Q Consensus 178 i~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs~R~~~ 257 (442)
+++|.|+++|++|.+++..|++|+++++++|+++++|++++|++|||+|+||+++++.++++|+|+||+||.||++||++
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~gt~LDs~R~r~ 160 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALA 160 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEeeehHHHHHHH
Confidence 99999999999999999999999999999999995599999999999999999999999888889999999999999999
Q ss_pred HHHHHhCCCcCcccceEEEeecCCCccccccccccc-C---cchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCc
Q 013466 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN-G---LPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333 (442)
Q Consensus 258 ~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~-G---~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss 333 (442)
+||+++|+++++|++++||||||++|||+||+++|+ | +|+.+++.+.+|+ ..++.+++++++++|++.+|++.
T Consensus 161 ~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~---~~~i~~~v~~~g~~Ii~~k~~~t 237 (324)
T TIGR01758 161 QVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATVTKGGKQKPVREAIKDDAYL---DGEFITTVQQRGAAIIRARKLSS 237 (324)
T ss_pred HHHHHhCCChhhceEeEEEECCCCCcccccccceecCCCCccCHHHHhcchhhH---HHHHHHHHHhCHHHHHhccCCCH
Confidence 999999999999976799999999999999999999 9 9999987653342 44566677779999999777555
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCc-cCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHH
Q 013466 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP-YGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQEL 412 (442)
Q Consensus 334 ~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~-ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l 412 (442)
.+++|.++++.+++|+.|.|++.++|+|++++| + ||+|+|+|||+||++|++|+ +++.+++|+++|+++|++|++.|
T Consensus 238 ~~~ia~~~~~i~~ai~~~~~~~~i~~vs~~~~g-~~yg~~~~v~~s~P~~ig~g~~-~~i~el~L~~~E~~~l~~s~~~l 315 (324)
T TIGR01758 238 ALSAAKAAVDQMHDWVLGTPEGTFVSMGVYSDG-SPYGVPKGLIFSFPVTCKNGEW-KIVEGLCVDDSSRKKLALTAKEL 315 (324)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEEEeecCC-cccCCCCceEEEEEEEEcCCeE-EEecCCCCCHHHHHHHHHHHHHH
Confidence 567899999999999988789999999999999 8 99989999999999995555 54546999999999999999999
Q ss_pred HHHHHHHH
Q 013466 413 LAEKKCVA 420 (442)
Q Consensus 413 ~~~~~~~~ 420 (442)
+++++++.
T Consensus 316 k~~~~~~~ 323 (324)
T TIGR01758 316 EEERDEAL 323 (324)
T ss_pred HHHHHHhh
Confidence 99998763
No 12
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=2.3e-65 Score=517.38 Aligned_cols=305 Identities=21% Similarity=0.310 Sum_probs=273.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-CcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~~~eal~dADi 175 (442)
+||+|||| |+||+++++.|+..+++++ +.|+ |+++++++|+++||+|+. ++...+.++. ++|++++|||+
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~e---l~Li----Di~~~~~~g~a~DL~~~~-~~~~~~~i~~~~dy~~~~daDi 108 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADE---LALV----DVNPDKLRGEMLDLQHAA-AFLPRTKILASTDYAVTAGSDL 108 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCE---EEEE----eCCCchhhHHHHHHHhhh-hcCCCCEEEeCCCHHHhCCCCE
Confidence 69999996 9999999999999999875 6663 456788999999999997 4443356653 68999999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R 254 (442)
||+++|.||+|||+|.|++.+|++|+++++++|+++| |++++|++|||+|++|++++++++ +|+ |+||+||.||++|
T Consensus 109 VVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~-p~~ivivvtNPvdv~t~~~~k~sg-~p~~rviG~gt~LDs~R 186 (350)
T PLN02602 109 CIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYS-PDTILLIVSNPVDVLTYVAWKLSG-FPANRVIGSGTNLDSSR 186 (350)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCchHHHHHHHHHHhC-CCHHHEEeecchHHHHH
Confidence 9999999999999999999999999999999999995 999999999999999999999995 776 8899999999999
Q ss_pred HHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhc--cCChHHHHHHHHHHhhhhHHHHHhcCCC
Q 013466 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KWLEEGFTETIQKVRLRGGLLIKKWGRS 332 (442)
Q Consensus 255 ~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~--~~~~~e~~~~~~~v~~~g~eii~~kG~s 332 (442)
++++||+++|+++++|++ +||||||+++||+||+++|+|+|+.+++.+. .++++++.++.+++++++++|++.||.+
T Consensus 187 ~r~~lA~~l~v~~~~V~~-~ViGeHGds~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~KG~t 265 (350)
T PLN02602 187 FRFLIADHLDVNAQDVQA-YIVGEHGDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLKGYT 265 (350)
T ss_pred HHHHHHHHhCCCccceee-eEEecCCCceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999997 8999999999999999999999999987542 3445667888999999999999999988
Q ss_pred chHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCC-CceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 333 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIA-EDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 333 s~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip-~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
+|+ +|.++++++.+++ +|++.++|+|++++| +||+| +++|||+||++|++|+++++ +++|+++|+++|++|+++
T Consensus 266 ~~g-ia~a~a~ii~ail--~d~~~v~~vsv~~~g-~Yg~~~~~v~~s~P~~ig~~Gi~~i~-~l~L~~~E~~~l~~sa~~ 340 (350)
T PLN02602 266 SWA-IGYSVASLVRSLL--RDQRRIHPVSVLAKG-FHGIDEGDVFLSLPAQLGRNGVLGVV-NVHLTDEEAERLRKSAKT 340 (350)
T ss_pred HHH-HHHHHHHHHHHHH--hcCCCeEEEEEeccc-ccCCCCCCcEEEEEEEEeCCeeEEEe-cCCCCHHHHHHHHHHHHH
Confidence 764 6677777777777 589999999999999 79994 89999999999999999999 699999999999999999
Q ss_pred HHHHHHH
Q 013466 412 LLAEKKC 418 (442)
Q Consensus 412 l~~~~~~ 418 (442)
|++..+.
T Consensus 341 l~~~~~~ 347 (350)
T PLN02602 341 LWEVQSQ 347 (350)
T ss_pred HHHHHHH
Confidence 9976554
No 13
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=4.8e-65 Score=506.59 Aligned_cols=297 Identities=23% Similarity=0.331 Sum_probs=268.0
Q ss_pred EEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEEEeC
Q 013466 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIG 180 (442)
Q Consensus 101 IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIi~a 180 (442)
|||| |+||+++++.|+..+++++ |.|+ |+++++++|+++||+|+.+.+..+++++.++|++++|||+||+++
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~e---l~L~----Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVita 72 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADE---IVLI----DINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITA 72 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCE---EEEE----eCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECC
Confidence 6895 9999999999999999875 6663 556788999999999998555456788888999999999999999
Q ss_pred CcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHHHHHHH
Q 013466 181 AKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKCQL 259 (442)
Q Consensus 181 g~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R~~~~l 259 (442)
|.||||||+|.|++.+|++|+++++++|++++ |++++|++|||+|+||+++++++ ++|+ |+||+||.||++|+++++
T Consensus 73 g~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP~d~~t~~~~~~s-g~p~~~viG~gt~LDs~R~~~~l 150 (299)
T TIGR01771 73 GAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVATNPVDILTYVAWKLS-GFPKNRVIGSGTVLDTARLRYLL 150 (299)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHh-CCCHHHEEeccchHHHHHHHHHH
Confidence 99999999999999999999999999999985 99999999999999999999998 5776 889999999999999999
Q ss_pred HHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccC-ChHHHHHHHHHHhhhhHHHHHhcCCCchHHHH
Q 013466 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW-LEEGFTETIQKVRLRGGLLIKKWGRSSAASTA 338 (442)
Q Consensus 260 A~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~-~~~e~~~~~~~v~~~g~eii~~kG~ss~~s~A 338 (442)
|+++|+++++|++ +||||||++|||+||+++|+|+|+.+++.+... ...++.++.++++.+|++|++.||+++|+ +|
T Consensus 151 a~~l~v~~~~V~~-~v~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kG~t~~~-~a 228 (299)
T TIGR01771 151 AEKLGVDPQSVHA-YIIGEHGDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKGATYYG-IG 228 (299)
T ss_pred HHHhCcCcCeEEE-EEEecCCCceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcCCeeeHH-HH
Confidence 9999999999996 899999999999999999999999998754211 12346678888999999999999998876 56
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHH
Q 013466 339 VSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLA 414 (442)
Q Consensus 339 ~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~ 414 (442)
.++++++++|+ .|+++++|+|++++| +||+ +|+|||+||++|++|+++++ +++|+++|+++|++|++.|++
T Consensus 229 ~a~~~~i~ail--~d~~~v~~~s~~~~g-~yg~-~~~~~s~P~~ig~~Gv~~i~-~l~L~~~E~~~l~~s~~~ik~ 299 (299)
T TIGR01771 229 MAVARIVEAIL--HDENRVLPVSAYLDG-EYGI-KDVYIGVPAVLGRNGVEEII-ELPLSDEEKEAFQKSAETLKK 299 (299)
T ss_pred HHHHHHHHHHH--cCCCcEEEEEEEecc-cCCC-CCEEEEEEEEEeCCeeEEEc-cCCCCHHHHHHHHHHHHHHhC
Confidence 68888888888 578999999999999 7998 68999999999999999999 699999999999999999873
No 14
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=1.7e-64 Score=506.16 Aligned_cols=307 Identities=23% Similarity=0.352 Sum_probs=276.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
+..+||+|||| |+||+++++.|+..+++++ |.|+ |+++++++|+++||+|+. ++..++++++++|++++||
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~e---l~L~----D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~~~~~~a 74 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADE---LVII----DINKEKAEGDAMDLSHAV-PFTSPTKIYAGDYSDCKDA 74 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCE---EEEE----eCCCchhHHHHHHHHhhc-cccCCeEEEeCCHHHhCCC
Confidence 34579999996 9999999999999999764 6663 557788999999999998 5545678888999999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhH
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs 252 (442)
|+||+++|.||+|||+|.|++..|++|++++++.+++++ |++++|++|||+|++|+++++++ ++|+ |+||+||.||+
T Consensus 75 divIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP~d~~~~~~~k~s-g~p~~~viG~gt~LDs 152 (315)
T PRK00066 75 DLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNPVDILTYATWKLS-GFPKERVIGSGTSLDS 152 (315)
T ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCcHHHHHHHHHHHh-CCCHHHEeecCchHHH
Confidence 999999999999999999999999999999999999995 99999999999999999999998 4776 78999999999
Q ss_pred HHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccC-ChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW-LEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 253 ~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~-~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
+|+++++|+++|+++++|++ +||||||++++|+||+++|+|+|+.+++.+..| ..++++++.++++++++++++.||+
T Consensus 153 ~R~~~~la~~l~v~~~~V~~-~viGeHG~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kg~ 231 (315)
T PRK00066 153 ARFRYMLSEKLDVDPRSVHA-YIIGEHGDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKKGA 231 (315)
T ss_pred HHHHHHHHHHhCCCcccEEE-EEEecCCCcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 99999999999999999996 899999999999999999999999999876444 3456788888999999999999999
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
++|+ .|.++++.+.+++ .|++.++|+|++++| +|| ++++|||+||++|++|+++++ +++|+++|+++|++|+++
T Consensus 232 t~~~-~a~~~~~i~~ail--~~~~~v~~~sv~~~g-~yg-~~~v~~S~Pv~ig~~Gv~~i~-~l~L~~~E~~~L~~s~~~ 305 (315)
T PRK00066 232 TYYG-IAMALARITKAIL--NNENAVLPVSAYLEG-QYG-EEDVYIGVPAVVNRNGIREIV-ELPLNDDEKQKFAHSADV 305 (315)
T ss_pred ehHH-HHHHHHHHHHHHH--cCCCeEEEEEEEecc-ccC-CCCEEEEeEEEEeCCcEEEEc-CCCCCHHHHHHHHHHHHH
Confidence 8874 5666666677666 488999999999999 799 589999999999999999999 699999999999999999
Q ss_pred HHHHHHH
Q 013466 412 LLAEKKC 418 (442)
Q Consensus 412 l~~~~~~ 418 (442)
|++.++.
T Consensus 306 l~~~~~~ 312 (315)
T PRK00066 306 LKEIMDE 312 (315)
T ss_pred HHHHHHH
Confidence 9987664
No 15
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.4e-64 Score=504.17 Aligned_cols=304 Identities=21% Similarity=0.310 Sum_probs=271.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dAD 174 (442)
.+||+|||| |+||+++++.|+..++.++ |.| + |+++++++|+++||+|+. ++.....+. +++|++++|||
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~e---l~L--i--D~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~~~~ad 73 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADE---LVL--V--DVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSVTANSK 73 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCE---EEE--E--eCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHHhCCCC
Confidence 469999996 9999999999999998764 666 3 455688999999999998 443222443 57899999999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~ 253 (442)
+||+++|.|++|||+|.|++.+|++|++++++.|++++ |++++|++|||+|++|+++++++ ++|+ |+||+||.||++
T Consensus 74 ivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP~d~~t~~~~k~s-g~p~~~viG~gt~Ld~~ 151 (312)
T cd05293 74 VVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYS-PNAILLVVSNPVDIMTYVAWKLS-GLPKHRVIGSGCNLDSA 151 (312)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEccChHHHHHHHHHHHh-CCCHHHEEecCchHHHH
Confidence 99999999999999999999999999999999999995 99999999999999999999998 5765 889999999999
Q ss_pred HHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhc--cCChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KWLEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 254 R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~--~~~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
|++++||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++... ....++++++.++++++|++|++.||.
T Consensus 152 R~~~~la~~l~v~~~~v~~-~v~GeHG~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg~ 230 (312)
T cd05293 152 RFRYLIAERLGVAPSSVHG-WIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKGY 230 (312)
T ss_pred HHHHHHHHHhCCChhhEEE-EEeecCCCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999996 9999999999999999999999999987432 122345788889999999999999998
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
++|+ +|.++++.+.+|+ +|++.+++++++++| +||+|+|++||+||++|++|+++++ .++|+++|+++|++|++.
T Consensus 231 t~~~-~a~a~~~ii~ail--~d~~~~~~vsv~~~g-~yg~~~d~~~svP~~ig~~Gi~~i~-~l~L~~~E~~~l~~s~~~ 305 (312)
T cd05293 231 TSWA-IGLSVADLVDAIL--RNTGRVHSVSTLVKG-LHGIEDEVFLSLPCILGENGITHVI-KQPLTEEEQEKLQKSADT 305 (312)
T ss_pred chHH-HHHHHHHHHHHHH--cCCCeEEEEEEEeCC-ccCCCCCeEEEEeEEEeCCceEEEe-cCCCCHHHHHHHHHHHHH
Confidence 8875 6778888888888 578899999999999 7999999999999999999999999 599999999999999999
Q ss_pred HHHHH
Q 013466 412 LLAEK 416 (442)
Q Consensus 412 l~~~~ 416 (442)
|++..
T Consensus 306 i~~~~ 310 (312)
T cd05293 306 LWEVQ 310 (312)
T ss_pred HHHHh
Confidence 98754
No 16
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=2.1e-64 Score=502.54 Aligned_cols=302 Identities=41% Similarity=0.628 Sum_probs=269.4
Q ss_pred HHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHH
Q 013466 116 LAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLD 195 (442)
Q Consensus 116 L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~ 195 (442)
|+++++|+.++++.|+|+|++.++++++|++|||.|+..++...+++++++|++++|||+||+++|.||+||++|.|++.
T Consensus 2 ~~~g~~~g~~~~~~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~ 81 (309)
T PLN00135 2 IARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMS 81 (309)
T ss_pred cccccccCCCCeEEEEEecCcccccchhhHHHHHHhhhHHhcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHH
Confidence 56788999889999999987776699999999999998555545665566699999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEE
Q 013466 196 INGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275 (442)
Q Consensus 196 ~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~V 275 (442)
.|++|++++++.|+++++|++++|++|||+|+||+++++.++.+++|+||+||.||++||+++||+++|+++++|+++||
T Consensus 82 ~N~~I~~~i~~~i~~~~~p~aivivvsNPvDv~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V 161 (309)
T PLN00135 82 KNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVII 161 (309)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCcHHHHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEE
Confidence 99999999999999964599999999999999999999999766669999999999999999999999999999955699
Q ss_pred EeecCCCcccccccccc----cCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh-cCCCchHHHHHHHHHHHHHhhc
Q 013466 276 WGNHSTTQVPDFLNARI----NGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK-WGRSSAASTAVSIVDAMKSLVT 350 (442)
Q Consensus 276 iG~HG~t~vp~~S~a~I----~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~-kG~ss~~s~A~~i~~aI~~~l~ 350 (442)
|||||++|||+||+++| +|+|+.+++.+.+|+ ..++.++++.++++|++. +|++ ++++|.++++.+++|+.
T Consensus 162 lGeHG~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~---~~~i~~~v~~~g~~Ii~~~kg~t-~~~ia~a~~~iv~ai~~ 237 (309)
T PLN00135 162 WGNHSSTQYPDVNHATVKTPSGEKPVRELVADDAWL---NGEFITTVQQRGAAIIKARKLSS-ALSAASSACDHIRDWVL 237 (309)
T ss_pred EEcCCCceeeccccceEecCCCCcCHHHHhCchhhH---HHHHHHHHHHHHHHHHHccCccH-HHHHHHHHHHHHHHHHh
Confidence 99999999999999999 999999987543342 456667777899999997 5544 45688899999999886
Q ss_pred CCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013466 351 PTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLT 423 (442)
Q Consensus 351 ~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~ 423 (442)
+.|++.++|+|++++| +||+|+|+|||+||+++++|++.++ +++|+++|+++|++|+++|+++++.+.+.+
T Consensus 238 ~~~~~~v~~vsv~~~g-~YGi~~~v~~s~P~vlg~~gve~v~-~l~L~~~E~~~l~~S~~~lk~~~~~~~~~~ 308 (309)
T PLN00135 238 GTPEGTWVSMGVYSDG-SYGVPPGLIYSFPVTCEKGEWSIVQ-GLSIDEFSRKKMDATAKELKEEKELAYSCL 308 (309)
T ss_pred CCcCCeEEEEEEEecC-ccCCcCCeEEEEEEEEECCEEEEec-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5478999999999999 7999899999999999999998887 699999999999999999999999997654
No 17
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=2e-64 Score=503.85 Aligned_cols=305 Identities=33% Similarity=0.551 Sum_probs=268.9
Q ss_pred HHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEEEeCCcCCCCCCcHHh
Q 013466 113 LFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192 (442)
Q Consensus 113 a~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~d 192 (442)
.+.|+.+++|+ |+++.|+|+|++.++++++|+++||.|+.++......++++.+++++|||+||+++|.|||||++|.|
T Consensus 2 ~~~~~~g~~~g-~~~~~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~d 80 (313)
T TIGR01756 2 SHWIANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRAD 80 (313)
T ss_pred cceeccCcccC-CCeEEEEEecCCCccchhHhHHHHHHHhccccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHH
Confidence 46788899999 89999999988877899999999999998444333334444447999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHH-HHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCccc
Q 013466 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL-KNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271 (442)
Q Consensus 193 ll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~-k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~ 271 (442)
++..|++|+++++++|++++.|++++|++|||+|+||++++ +.+ ++|+++||+||.||++||+++||++++++|++|+
T Consensus 81 ll~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~~~~s-g~p~~vig~gt~LDsaR~r~~la~~l~v~~~~V~ 159 (313)
T TIGR01756 81 LLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLHAP-KLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIY 159 (313)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHHHHcC-CCCHHHEEecccHHHHHHHHHHHHHhCcChhhee
Confidence 99999999999999999997456899999999999999994 665 7888899999999999999999999999999998
Q ss_pred ceEEEeecCCCcccccccccc--cCcchhhh--hhhccCChHHHHHHHHHHhhhhHHHHHhcCCCchHHHHHHHHHHHHH
Q 013466 272 NMTIWGNHSTTQVPDFLNARI--NGLPVKEI--IKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKS 347 (442)
Q Consensus 272 ~~~ViG~HG~t~vp~~S~a~I--~G~p~~~~--i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss~~s~A~~i~~aI~~ 347 (442)
+.+||||||++|||+||+++| +|+|+..+ +.+ +| ...++.+++++++++|++.||+++|+.+|.++++.+++
T Consensus 160 ~~~V~GeHG~s~vp~~S~~~V~~~G~~~~~~~~~~~-~~---~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~a 235 (313)
T TIGR01756 160 HVVVWGNHAESMVADLTHAEFTKNGKHQKVFDELCR-DY---PEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKA 235 (313)
T ss_pred eeEEEECCCCceeecccccEEecCCeehhHhhhcCc-Hh---HHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHH
Confidence 767999999999999999999 99987654 221 12 35567777888999999999999988788899999999
Q ss_pred hhcCCCCCcEEEEeeeeCC-CccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013466 348 LVTPTPEGDWFSSGVYTNG-NPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLT 423 (442)
Q Consensus 348 ~l~~~d~~~v~~~sv~~~G-~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~ 423 (442)
|+.++|+++++|+|++++| .+||+|+|+|||+||++|++|+++++++++|+++|+++|++|+++|++|++++.+++
T Consensus 236 il~~~~~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l~L~~~E~~~l~~Sa~~l~~e~~~~~~~~ 312 (313)
T TIGR01756 236 WLFGTRPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQTEKDLFEERETALKAL 312 (313)
T ss_pred HhcCCCCCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9977788999999999953 279998899999999999999999995599999999999999999999999987654
No 18
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=5.9e-64 Score=504.18 Aligned_cols=320 Identities=50% Similarity=0.759 Sum_probs=280.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
++.||+|+||+|+||+++++.|+..++++.++...|+++|.+.+.++++|+++|+.|+.+++..++++..+.+++++|||
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aD 80 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVD 80 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCC
Confidence 46899999988999999999999999986222234455555445567899999999997665556666666689999999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccchhhHHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENR 254 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs~R 254 (442)
+||++||.|+++|++|.+++..|++|++++++.|+++++|++++|++|||+|+||+++++.++++|+++||+||.||++|
T Consensus 81 iVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~ig~gt~LDs~R 160 (325)
T cd01336 81 VAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNR 160 (325)
T ss_pred EEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHHEEeeehHHHHH
Confidence 99999999999999999999999999999999999996589999999999999999999998789887799999999999
Q ss_pred HHHHHHHHhCCCcCcccceEEEeecCCCccccccccccc----CcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcC
Q 013466 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN----GLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWG 330 (442)
Q Consensus 255 ~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~----G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG 330 (442)
|+++||+++++++++|++.+||||||++|||+||+++|+ |+|+.+++++..|. +.++.+++++++++|++.++
T Consensus 161 ~r~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~---~~~i~~~v~~~g~~Ii~~~~ 237 (325)
T cd01336 161 AKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVELNGKGKPAREAVKDDAWL---NGEFISTVQKRGAAVIKARK 237 (325)
T ss_pred HHHHHHHHhCcChhhceEeEEEEcCCCCeeeccccceeecCCCCccHHHHhcccchh---HHHHHHHHHhhHHHHHHccc
Confidence 999999999999999987679999999999999999999 99999987654443 45566677779999999644
Q ss_pred CCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHH
Q 013466 331 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQ 410 (442)
Q Consensus 331 ~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~ 410 (442)
++.+++.|.++++.+++|+.+.+++.++|+|++++| +||+|+|+|||+||++|++||++++ +++|+++|+++|++|++
T Consensus 238 g~t~~~~a~~~~~i~~ail~~~~~~~v~~vs~~~~g-~yg~~~~v~~s~P~~ig~~Gv~~i~-~~~L~~~E~~~l~~s~~ 315 (325)
T cd01336 238 LSSAMSAAKAICDHVHDWWFGTPEGEFVSMGVYSDG-SYGVPEGLIFSFPVTCKNGKWKIVQ-GLSIDDFSREKIDATAK 315 (325)
T ss_pred cchHHHHHHHHHHHHHHHHcCCCCCeEEEEEEecCC-CcCCCCceEEEEEEEEeCCEEEEec-CCCCCHHHHHHHHHHHH
Confidence 444556888899999999854346899999999999 8999999999999999999999998 79999999999999999
Q ss_pred HHHHHHHHH
Q 013466 411 ELLAEKKCV 419 (442)
Q Consensus 411 ~l~~~~~~~ 419 (442)
.|++|++.+
T Consensus 316 ~l~~e~~~~ 324 (325)
T cd01336 316 ELVEEKETA 324 (325)
T ss_pred HHHHHHHhh
Confidence 999999865
No 19
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=3.5e-63 Score=495.56 Aligned_cols=304 Identities=23% Similarity=0.353 Sum_probs=274.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||+|||+ |+||+++++.|+..++..+ |.|+ |+++++++++++||+|+.......+.+..+++++++|||+|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~e---i~l~----D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIV 72 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADE---LVLI----DINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIV 72 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCE---EEEE----eCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEE
Confidence 38999995 9999999999999998654 6663 55678899999999998743334556667889999999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHHH
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R~ 255 (442)
|+++|.||+|||+|.|++.+|++|+++++++|++++ |++++|++|||+|+||+++++++ ++|+ |+||+||.||++|+
T Consensus 73 Iitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP~d~~~~~~~~~~-g~p~~~v~g~gt~LDs~R~ 150 (306)
T cd05291 73 VITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNPVDVITYVVQKLS-GLPKNRVIGTGTSLDTARL 150 (306)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHh-CcCHHHEeeccchHHHHHH
Confidence 999999999999999999999999999999999995 99999999999999999999997 6776 88999999999999
Q ss_pred HHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCchH
Q 013466 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAA 335 (442)
Q Consensus 256 ~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss~~ 335 (442)
+++||+++|+++++|++ +||||||++++|+||+++|+|+|+.+++.+..|..+++.++.++++++|++|++.||.++|+
T Consensus 151 ~~~la~~l~v~~~~v~~-~V~G~Hg~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~t~~~ 229 (306)
T cd05291 151 RRALAEKLNVDPRSVHA-YVLGEHGDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGKGATYYG 229 (306)
T ss_pred HHHHHHHHCCCcccceE-EEEecCCCceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHccCccHHH
Confidence 99999999999999997 99999999999999999999999999987666777778899999999999999999988865
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHHH
Q 013466 336 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAE 415 (442)
Q Consensus 336 s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~ 415 (442)
+|.++++.+++|+ .|++.++|+|++++| +|| ++|+|||+||++|++|+++++ +++|+++|+++|++|+++|++.
T Consensus 230 -~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg-~~~v~~s~P~~ig~~Gv~~i~-~~~l~~~E~~~l~~s~~~l~~~ 303 (306)
T cd05291 230 -IATALARIVKAIL--NDENAILPVSAYLDG-EYG-EKDVYIGVPAIIGRNGVEEVI-ELDLTEEEQEKFEKSADIIKEN 303 (306)
T ss_pred -HHHHHHHHHHHHH--cCCCEEEEEEEEecc-ccC-CCCEEEEEEEEEeCCCEEEEE-CCCCCHHHHHHHHHHHHHHHHH
Confidence 5567777788877 588999999999999 799 589999999999999999998 6999999999999999999976
Q ss_pred HH
Q 013466 416 KK 417 (442)
Q Consensus 416 ~~ 417 (442)
.+
T Consensus 304 ~~ 305 (306)
T cd05291 304 IK 305 (306)
T ss_pred hh
Confidence 43
No 20
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.6e-62 Score=462.23 Aligned_cols=305 Identities=21% Similarity=0.314 Sum_probs=275.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dAD 174 (442)
..||.|+|+ |+||.+.++.++..++.++ ++|. |.++++++|.+|||+|.. +++..-++. ..+|.+.+|+|
T Consensus 20 ~~KItVVG~-G~VGmAca~siL~k~Lade---l~lv----Dv~~dklkGE~MDLqH~s-~f~~~~~V~~~~Dy~~sa~S~ 90 (332)
T KOG1495|consen 20 HNKITVVGV-GQVGMACAISILLKGLADE---LVLV----DVNEDKLKGEMMDLQHGS-AFLSTPNVVASKDYSVSANSK 90 (332)
T ss_pred CceEEEEcc-chHHHHHHHHHHHhhhhhc---eEEE----ecCcchhhhhhhhhcccc-ccccCCceEecCcccccCCCc
Confidence 579999995 9999999999999999876 7774 556789999999999998 666544443 34899999999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~ 253 (442)
+||+|||...++|++|++++++|..|++.+.+++.+| +|++++|++|||+|+|||+.||.+ ++|+ |+||+||.|||+
T Consensus 91 lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVDilTYv~wKLS-gfP~nRViGsGcnLDsa 168 (332)
T KOG1495|consen 91 LVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVDILTYVTWKLS-GFPKNRVIGSGCNLDSA 168 (332)
T ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchHHHHHHHHHHc-CCcccceeccCcCccHH
Confidence 9999999999999999999999999999999999999 699999999999999999999999 5776 999999999999
Q ss_pred HHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhc--cCChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KWLEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 254 R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~--~~~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
|||++++++||++|+++++ ||+|||||+.||.||.+.|.|.++.++..+- ..+++.+.++-+++.+.+||||+.||+
T Consensus 169 RFryLi~~~Lg~~pss~hg-wIiGEHGdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklKGy 247 (332)
T KOG1495|consen 169 RFRYLIGNRLGVHPSSCHG-WIIGEHGDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLKGY 247 (332)
T ss_pred HHHHHHHHHhCCCcccceE-EEeeccCCccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999997 9999999999999999999999999987553 346678888889999999999999999
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
|+|+ .+.++++.+.+++ .|.+.++|+|+...| .|||.+|+|+|+||++|++|+..++ ..+|+++|.++|++|++.
T Consensus 248 Tswa-Iglsva~l~~ail--~n~~~i~~Vst~~kg-~~gI~~dVflSlPc~l~~~Gi~~vv-~~~Lt~~E~akL~kSa~t 322 (332)
T KOG1495|consen 248 TSWA-IGLSVADLAQAIL--RNLRRIHPVSTMVKG-LYGIDDDVFLSLPCLLGANGITHVV-KQKLTDEEVAKLKKSAKT 322 (332)
T ss_pred hHHH-HHHHHHHHHHHHH--hCcCceeeeeecccc-ccCCCCceEEecceeecCCchhhhh-cccCCHHHHHHHHHHHHH
Confidence 9985 5666666666666 589999999999999 7999999999999999999999999 799999999999999999
Q ss_pred HHHHHH
Q 013466 412 LLAEKK 417 (442)
Q Consensus 412 l~~~~~ 417 (442)
|.+..+
T Consensus 323 l~~~q~ 328 (332)
T KOG1495|consen 323 LLEAQK 328 (332)
T ss_pred HHHHHH
Confidence 987443
No 21
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-60 Score=479.55 Aligned_cols=311 Identities=24% Similarity=0.357 Sum_probs=277.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dA 173 (442)
+.+||+|||| |+||+++++.|+..++ . ++.|+ |+++++++|.++|+.|+.........+. +++|++++||
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~---~l~L~----Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~A 74 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL-G---DVVLY----DVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDS 74 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC-C---eEEEE----ECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCC
Confidence 4569999996 9999999999999886 3 26664 4455678899999999863222334443 4688999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCC-cceeeccchhhH
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP-AKNFHALTRLDE 252 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p-~kvig~gT~LDs 252 (442)
|+||+++|.|++||++|.|++..|+++++++++.|+++| |++|+|++|||+|++++++++.+ ++| .|+||+||.||+
T Consensus 75 DiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~di~t~~~~~~s-~~p~~rviG~gt~lds 152 (319)
T PTZ00117 75 DVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPLDCMVKVFQEKS-GIPSNKICGMAGVLDS 152 (319)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHHHHHHHHHHhh-CCCcccEEEecchHHH
Confidence 999999999999999999999999999999999999996 99999999999999999999988 677 499999999999
Q ss_pred HHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh--cC
Q 013466 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK--WG 330 (442)
Q Consensus 253 ~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~--kG 330 (442)
+|++++||+++|+++++|+. +|+||||+++||+||+++|+|+|+.+++++..|..++++++.++++.++++|++. ||
T Consensus 153 ~R~~~~la~~l~v~~~~v~~-~viGeHg~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~~kg 231 (319)
T PTZ00117 153 SRFRCNLAEKLGVSPGDVSA-VVIGGHGDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLLKKG 231 (319)
T ss_pred HHHHHHHHHHhCCCcccceE-EEeecCCCcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999996 8999999999999999999999999998776688788899999999999999997 45
Q ss_pred CCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHH
Q 013466 331 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQ 410 (442)
Q Consensus 331 ~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~ 410 (442)
.+. +++|.++++.+.+|+ .|+++++|+|++++| +||+ +|+|||+||++|++|+++++ +++|+++|+++|++|++
T Consensus 232 ~t~-~~~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~-~~~~~s~P~~ig~~Gv~~i~-~l~l~~~E~~~l~~s~~ 305 (319)
T PTZ00117 232 SAF-FAPAAAIVAMIEAYL--KDEKRVLVCSVYLNG-QYNC-KNLFVGVPVVIGGKGIEKVI-ELELNAEEKELFDKSIE 305 (319)
T ss_pred ChH-HHHHHHHHHHHHHHh--cCCCeEEEEEEEecc-ccCC-CCeEEEEEEEEeCCeEEEEe-CCCCCHHHHHHHHHHHH
Confidence 443 568888999999888 478999999999999 7999 49999999999999999999 59999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 013466 411 ELLAEKKCVAHLT 423 (442)
Q Consensus 411 ~l~~~~~~~~~~~ 423 (442)
.|++.++.+.+|+
T Consensus 306 ~l~~~~~~~~~~~ 318 (319)
T PTZ00117 306 SIQELTQKAKALI 318 (319)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988875
No 22
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=5.4e-61 Score=478.40 Aligned_cols=297 Identities=24% Similarity=0.338 Sum_probs=266.1
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCcEEE
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEWAL 177 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dADiVI 177 (442)
|+|||| |+||+++++.|+..+++++ +.|+ |+++++++|+++||+|+...+ ..+++. +++|++++|||+||
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~e---l~l~----D~~~~~~~g~~~DL~~~~~~~-~~~~i~~~~~~~~l~~aDiVI 71 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASE---LVLV----DVNEEKAKGDALDLSHASAFL-ATGTIVRGGDYADAADADIVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCE---EEEE----eCCccHHHHHHHhHHHhcccc-CCCeEEECCCHHHhCCCCEEE
Confidence 689996 9999999999999999865 6663 556788999999999998543 334443 46699999999999
Q ss_pred EeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHHHH
Q 013466 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAK 256 (442)
Q Consensus 178 i~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R~~ 256 (442)
+++|.|++|||+|.+++.+|++|+++++++|+++| |++++|++|||+|++|++++++++ +|+ |+||+||.||++|++
T Consensus 72 itag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d~~~~~~~~~sg-~~~~kviG~gt~lDs~r~~ 149 (300)
T cd00300 72 ITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVDILTYVAQKLSG-LPKNRVIGSGTLLDSARFR 149 (300)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHHHHHHHHHHHhC-cCHHHEEecCCcHHHHHHH
Confidence 99999999999999999999999999999999996 999999999999999999999995 765 899999999999999
Q ss_pred HHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCchHH
Q 013466 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAAS 336 (442)
Q Consensus 257 ~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss~~s 336 (442)
+++|+++|+++++|++ +||||||+++||+||+++|+|+|+.+++++.+ ++++++.++++++++++++.||+++| +
T Consensus 150 ~~la~~l~v~~~~v~~-~viGeHg~s~v~~~S~~~v~g~p~~~~~~~~~---~~~~~l~~~v~~~~~~ii~~kg~t~~-~ 224 (300)
T cd00300 150 SLLAEKLDVDPQSVHA-YVLGEHGDSQVVAWSTATVGGLPLEELAPFTK---LDLEAIEEEVRTSGYEIIRLKGATNY-G 224 (300)
T ss_pred HHHHHHhCCCcccEEE-EEEeccCCceeeeeeeeEECCEEHHHhhcccH---HHHHHHHHHHHHHHHHHHHccCcchH-H
Confidence 9999999999999997 89999999999999999999999999876533 34566677788899999999998886 4
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHHHH
Q 013466 337 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEK 416 (442)
Q Consensus 337 ~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~ 416 (442)
+|.++++.+++|+ +|+++++|+|++++| +|| ++++|||+||++|++|+++++ +++|+++|+++|++|+++|++..
T Consensus 225 ~a~a~~~~~~ai~--~~~~~v~~~s~~~~g-~yg-~~~~~~s~Pv~ig~~Gi~~i~-~l~L~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd00300 225 IATAIADIVKSIL--LDERRVLPVSAVQEG-QYG-IEDVALSVPAVVGREGVVRIL-EIPLTEDEEAKLQKSAEALKEVL 299 (300)
T ss_pred HHHHHHHHHHHHH--cCCCeEEEEEEEecC-ccC-CCCEEEEEEEEEeCCCeEEEe-cCCCCHHHHHHHHHHHHHHHHHh
Confidence 7888888888888 578999999999999 899 589999999999999999999 69999999999999999998753
No 23
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=5.3e-60 Score=472.91 Aligned_cols=303 Identities=23% Similarity=0.344 Sum_probs=272.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|||+ |.||+++++.|+..++..+ +.|+ |++++++++.++|+.|+. ++..+..+.++++++++|||+|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~e---v~l~----D~~~~~~~g~a~dl~~~~-~~~~~~~i~~~d~~~l~~aDiV 71 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASE---IVLV----DINKAKAEGEAMDLAHGT-PFVKPVRIYAGDYADCKGADVV 71 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCE---EEEE----ECCchhhhhHHHHHHccc-cccCCeEEeeCCHHHhCCCCEE
Confidence 58999996 9999999999999998654 6663 556778899999999986 4444456667889999999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHHH
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R~ 255 (442)
|++++.|++||++|.+++..|+++++++++.|++++ |++++++++||+|+|++++++.+ ++|+ |+||+||.||++|+
T Consensus 72 iita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~-~~giiiv~tNP~d~~~~~~~~~s-g~p~~~viG~gt~LDs~R~ 149 (308)
T cd05292 72 VITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYA-PDAILLVVTNPVDVLTYVAYKLS-GLPPNRVIGSGTVLDTARF 149 (308)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHH-CcCHHHeecccchhhHHHH
Confidence 999999999999999999999999999999999995 99999999999999999999999 5776 88999999999999
Q ss_pred HHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhc--cCChHHHHHHHHHHhhhhHHHHHhcCCCc
Q 013466 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KWLEEGFTETIQKVRLRGGLLIKKWGRSS 333 (442)
Q Consensus 256 ~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~--~~~~~e~~~~~~~v~~~g~eii~~kG~ss 333 (442)
+++||+++++++++|++ +||||||+++||+||+++|+|+|+.+++.+. .++.++++++.+++++++++|++.||.++
T Consensus 150 ~~~la~~~~v~~~~v~~-~viGeHg~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~kg~t~ 228 (308)
T cd05292 150 RYLLGEHLGVDPRSVHA-YIIGEHGDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKGATY 228 (308)
T ss_pred HHHHHHHhCCCccceec-eeeccCCCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcCCccH
Confidence 99999999999999996 8999999999999999999999999987542 34556688888999999999999999887
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHH
Q 013466 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELL 413 (442)
Q Consensus 334 ~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~ 413 (442)
|+ +|.++++.+++|+ .|++.++|+|++++| +||+ +++|||+||+||++|+++++ +++|+++|+++|++|++.|+
T Consensus 229 ~~-~a~a~~~i~~ail--~~~~~v~~~s~~~~g-~yg~-~~~~~s~P~~ig~~Gv~~i~-~~~L~~~E~~~l~~s~~~i~ 302 (308)
T cd05292 229 YA-IGLALARIVEAIL--RDENSVLTVSSLLDG-QYGI-KDVALSLPCIVGRSGVERVL-PPPLSEEEEEALRASAEVLK 302 (308)
T ss_pred HH-HHHHHHHHHHHHH--cCCCcEEEEEEEEcc-cCCC-CCEEEEEEEEEeCCceEEec-CCCCCHHHHHHHHHHHHHHH
Confidence 64 5667777777777 588999999999999 7998 79999999999999999999 59999999999999999999
Q ss_pred HHHH
Q 013466 414 AEKK 417 (442)
Q Consensus 414 ~~~~ 417 (442)
+.++
T Consensus 303 ~~~~ 306 (308)
T cd05292 303 EAIE 306 (308)
T ss_pred HHHh
Confidence 8655
No 24
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-58 Score=464.78 Aligned_cols=307 Identities=20% Similarity=0.306 Sum_probs=268.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFED 172 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~d 172 (442)
.+++||+|||| |+||+++++.++..++. .+.|+ |++++++++.++|+.|.........++. +++|++++|
T Consensus 4 ~~~~KI~IIGa-G~vG~~ia~~la~~gl~----~i~Lv----Di~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~~ 74 (321)
T PTZ00082 4 IKRRKISLIGS-GNIGGVMAYLIVLKNLG----DVVLF----DIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIAG 74 (321)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCC----eEEEE----eCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhCC
Confidence 44579999995 99999999999998873 25563 4455678899999999853222234444 478899999
Q ss_pred CcEEEEeCCcCCCCCC-----cHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCC-cceeec
Q 013466 173 AEWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP-AKNFHA 246 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~-----~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p-~kvig~ 246 (442)
||+||+++|.|++||+ +|.+++..|++++++++++|+++| |++++|++|||+|++++++++.+ ++| .|+||+
T Consensus 75 aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~di~t~~~~~~s-g~p~~rviGl 152 (321)
T PTZ00082 75 SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPLDVMVKLLQEHS-GLPKNKVCGM 152 (321)
T ss_pred CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHhc-CCChhhEEEe
Confidence 9999999999999999 999999999999999999999996 99999999999999999999988 566 599999
Q ss_pred cchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHH
Q 013466 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLI 326 (442)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii 326 (442)
||.||++|++++||+++|+++++|++ +|+||||+++||+||+++|+|+|+.+++....+..+++.++.++++++|++|+
T Consensus 153 gt~lds~R~~~~la~~l~v~~~~v~~-~viGeHg~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~ 231 (321)
T PTZ00082 153 AGVLDSSRLRTYIAEKLGVNPRDVHA-SVIGAHGDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIV 231 (321)
T ss_pred cCcccHHHHHHHHHHHhCCCccccee-eEEecCCCceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999996 99999999999999999999999999875433455678888999999999999
Q ss_pred Hh--cCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHH
Q 013466 327 KK--WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKR 404 (442)
Q Consensus 327 ~~--kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~ 404 (442)
+. +|.+. +++|.++++.+++|+ .|++.++|+|++++| +||+ +|+|+|+||+||++|+++++ +++|+++|+++
T Consensus 232 ~~~gkg~t~-~~ia~a~~~i~~ail--~d~~~v~~vs~~~~g-~yg~-~~v~~s~P~~ig~~Gv~~i~-~~~l~~~E~~~ 305 (321)
T PTZ00082 232 DLLGTGSAY-FAPAAAAIEMAEAYL--KDKKRVLPCSAYLEG-QYGH-KDIYMGTPAVIGANGVEKII-ELDLTPEEQKK 305 (321)
T ss_pred hhcCCCccH-HHHHHHHHHHHHHHH--cCCCcEEEEEEEecc-cCCC-CCeEEEEEEEEeCCeEEEEe-CCCCCHHHHHH
Confidence 95 45555 457777777777777 588999999999999 7999 79999999999999999999 59999999999
Q ss_pred HHHHHHHHHHHHHH
Q 013466 405 IAKTEQELLAEKKC 418 (442)
Q Consensus 405 L~~sa~~l~~~~~~ 418 (442)
|++|++.|++..+.
T Consensus 306 l~~sa~~i~~~~~~ 319 (321)
T PTZ00082 306 FDESIKEVKRLEAL 319 (321)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999986554
No 25
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=6e-59 Score=464.26 Aligned_cols=296 Identities=22% Similarity=0.236 Sum_probs=248.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-Cc--ccccCCCc
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP--YELFEDAE 174 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~~--~eal~dAD 174 (442)
||+||||+|+||+++++.|+.+++.++ +.| +|+ ++ ++|++|||+|+.. ..+++.++ ++ |++++|||
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~e---lvL--~Di--~~--a~g~a~DL~~~~~--~~~i~~~~~~~~~~~~~~daD 69 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSE---LSL--YDI--AG--AAGVAADLSHIPT--AASVKGFSGEEGLENALKGAD 69 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcE---EEE--ecC--CC--CcEEEchhhcCCc--CceEEEecCCCchHHHcCCCC
Confidence 799999779999999999999988754 555 433 33 6799999999862 22344323 33 99999999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH----HHHHHHHHCCCCCc-ceeeccch
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT----NALICLKNAPSIPA-KNFHALTR 249 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~----lt~~~~k~s~~~p~-kvig~gT~ 249 (442)
+||+++|.||+||++|.|++..|++|+++++++|++++ |++++|++|||+|+ +|+++++.+ ++|+ |+||+|+
T Consensus 70 ivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPvDv~~~i~t~~~~~~s-g~p~~rViG~g~- 146 (312)
T TIGR01772 70 VVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPVNSTVPIAAEVLKKKG-VYDPNKLFGVTT- 146 (312)
T ss_pred EEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCchhhHHHHHHHHHHHhc-CCChHHEEeeec-
Confidence 99999999999999999999999999999999999995 99999999999998 888888888 5665 8999986
Q ss_pred hhHHHHHHHHHHHhCCCcCcccceEEEeecCC-CcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh
Q 013466 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK 328 (442)
Q Consensus 250 LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~-t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~ 328 (442)
||++||+++||+++|+++++|+. |||||||+ +|||+||++++ .+. +.++++.++.++++++|++|++.
T Consensus 147 LDsaR~r~~la~~l~v~~~~v~~-~ViGeHg~~s~vp~~S~~~~--~~~--------~~~~~~~~i~~~v~~~g~~Ii~~ 215 (312)
T TIGR01772 147 LDIVRANTFVAELKGKDPMEVNV-PVIGGHSGETIIPLISQCPG--KVL--------FTEDQLEALIHRIQNAGTEVVKA 215 (312)
T ss_pred chHHHHHHHHHHHhCCCHHHeEE-EEEEecCCCccccccccccc--cCC--------CCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999995 99999996 99999999984 232 22334677888888899999996
Q ss_pred ---cCCCch--HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCC-CCCHHHH
Q 013466 329 ---WGRSSA--ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLR 402 (442)
Q Consensus 329 ---kG~ss~--~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~-~L~~~E~ 402 (442)
+|.++| +.++..++++|..++ .|++.++|++ +++| +||. +|+|||+||++|++|+++++ ++ +|+++|+
T Consensus 216 k~gkg~t~~~ia~a~~~iv~ail~~~--~d~~~v~~~s-~~~g-~yg~-~~v~~s~P~~ig~~Gv~~i~-~~~~L~~~E~ 289 (312)
T TIGR01772 216 KAGAGSATLSMAFAGARFVLSLVRGL--KGEEGVVECA-YVES-DGVT-EATFFATPLLLGKNGVEKRL-GIGKLSSFEE 289 (312)
T ss_pred ccCCCChhHHHHHHHHHHHHHHHHhh--CCCccEEEEE-EEcc-CCCc-CceEEEEEEEEcCCeeEEEE-ccCCCCHHHH
Confidence 455554 333344555555544 3678899965 9999 7996 89999999999999999999 57 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 013466 403 KRIAKTEQELLAEKKCVAHLTG 424 (442)
Q Consensus 403 ~~L~~sa~~l~~~~~~~~~~~~ 424 (442)
++|++|++.|++..+.+..|..
T Consensus 290 ~~l~~S~~~i~~~~~~g~~~~~ 311 (312)
T TIGR01772 290 KMLNGALPELKKNIKKGEEFVA 311 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998888764
No 26
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=7.8e-59 Score=462.74 Aligned_cols=295 Identities=23% Similarity=0.308 Sum_probs=250.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc---ccccCCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP---YELFEDA 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~---~eal~dA 173 (442)
+||+||||+|+||+++++.|+.+++.++ +.| + |++ +++|+++||+|+... ..++...++ |++++||
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~e---lvL--i--Di~--~a~g~alDL~~~~~~--~~i~~~~~~~~~y~~~~da 69 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSE---LAL--Y--DIV--NTPGVAADLSHINTP--AKVTGYLGPEELKKALKGA 69 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcE---EEE--E--ecC--ccceeehHhHhCCCc--ceEEEecCCCchHHhcCCC
Confidence 5999999779999999999999998764 555 4 333 789999999999721 234432133 8999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHH----HHHHHHHCCCCCc-ceeeccc
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN----ALICLKNAPSIPA-KNFHALT 248 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l----t~~~~k~s~~~p~-kvig~gT 248 (442)
|+||+++|.||+||++|+|++..|++|+++++++|++++ |++|+|++|||+|+| ++++++.+ ++|+ |+||+|+
T Consensus 70 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvDv~~~i~t~~~~~~s-~~p~~rviG~~~ 147 (310)
T cd01337 70 DVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNPVNSTVPIAAEVLKKAG-VYDPKRLFGVTT 147 (310)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchhhHHHHHHHHHHHhc-CCCHHHEEeeec
Confidence 999999999999999999999999999999999999995 999999999999998 77888888 4665 8999976
Q ss_pred hhhHHHHHHHHHHHhCCCcCcccceEEEeec-CCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHH
Q 013466 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIK 327 (442)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~H-G~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~ 327 (442)
|||+|++++||+++|+++++|+ .+||||| |++|||+||++.+ +.+ ++++++.++.++++++|++|++
T Consensus 148 -LDs~R~~~~la~~l~v~~~~V~-~~v~GeHsGds~vp~~S~~~~----~~~------~~~~~~~~i~~~v~~~g~~Ii~ 215 (310)
T cd01337 148 -LDVVRANTFVAELLGLDPAKVN-VPVIGGHSGVTILPLLSQCQP----PFT------FDQEEIEALTHRIQFGGDEVVK 215 (310)
T ss_pred -hHHHHHHHHHHHHhCcCHHHEE-EEEEecCCCCceecccccccc----ccc------CCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 4999999 8999999999974 222 2334577888889999999999
Q ss_pred hc---CCCchHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCC-CCCHHHH
Q 013466 328 KW---GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLR 402 (442)
Q Consensus 328 ~k---G~ss~~s~A~~i~~aI~~~l~~-~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~-~L~~~E~ 402 (442)
.| |.++ +++|.++++++++|+.. .+++.+++++ +++| + |. +|+|||+||++|++|+++++ ++ +|+++|+
T Consensus 216 ~k~gkg~t~-~~~a~a~~~iv~aIl~~~~~~~~~~~~s-~~~~-~-g~-~~v~~s~P~~ig~~Gv~~i~-~l~~L~~~E~ 289 (310)
T cd01337 216 AKAGAGSAT-LSMAYAGARFANSLLRGLKGEKGVIECA-YVES-D-VT-EAPFFATPVELGKNGVEKNL-GLGKLNDYEK 289 (310)
T ss_pred CccCCCCcc-hhHHHHHHHHHHHHHHhcCCCcceEEEE-EEec-c-CC-CceEEEEEEEEeCCeEEEEe-CCCCCCHHHH
Confidence 74 5554 55888888888888843 3456788887 8777 3 65 79999999999999999998 58 6999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013466 403 KRIAKTEQELLAEKKCVAHL 422 (442)
Q Consensus 403 ~~L~~sa~~l~~~~~~~~~~ 422 (442)
++|++|++.|++..+.+..|
T Consensus 290 ~~l~~S~~~i~~~~~~g~~~ 309 (310)
T cd01337 290 KLLEAALPELKKNIEKGVDF 309 (310)
T ss_pred HHHHHHHHHHHHHHhhhccc
Confidence 99999999999988776655
No 27
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=2.4e-58 Score=460.02 Aligned_cols=299 Identities=22% Similarity=0.368 Sum_probs=259.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dADi 175 (442)
+||+|||+ |.||+.+|+.|+..++. + +.|+ |++++...|.++|+.|.........+++ ++++++++|||+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~---Vvlv----Di~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDi 72 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-D---LVLL----DVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDI 72 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-e---EEEE----eCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCE
Confidence 59999995 99999999999998874 2 6664 3355677889999988652211122342 567888999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R 254 (442)
||+++|.|++||++|.|++..|.+++++++++|.+++ |++++|++|||+|+||+++++.++ +|+ |+||+||.|||+|
T Consensus 73 VIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~t~~~~~~sg-~~~~rviG~g~~lds~R 150 (305)
T TIGR01763 73 VVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAMTYVAWQKSG-FPKERVIGQAGVLDSAR 150 (305)
T ss_pred EEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHHC-cCHHHEEEeccchHHHH
Confidence 9999999999999999999999999999999999995 999999999999999999999984 665 8999999999999
Q ss_pred HHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh--cCCC
Q 013466 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK--WGRS 332 (442)
Q Consensus 255 ~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~--kG~s 332 (442)
++++||+++++++++|+. +||||||++|||+||+++|+|+|+.+++.+ +++.++.++++.+|++|++. ||.+
T Consensus 151 ~~~~la~~l~v~~~~v~~-~v~GeHg~s~~~~wS~~~i~g~~~~~~~~~-----~~~~~l~~~v~~~g~~ii~~~~kg~t 224 (305)
T TIGR01763 151 FRTFIAMELGVSVQDVTA-CVLGGHGDAMVPLVRYSTVAGIPVADLISA-----ERIAEIVERTRKGGGEIVNLLKQGSA 224 (305)
T ss_pred HHHHHHHHhCcCHHHeee-eEEecCCCcEEeeeeeeEECCEEHHHhcCH-----HHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 999999999999999996 899999999999999999999999998542 34677888888899999996 4556
Q ss_pred chHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHH
Q 013466 333 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQEL 412 (442)
Q Consensus 333 s~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l 412 (442)
.| ++|.++++.+.+++ .|++.++|+|++++| +||+ +|+|+|+||++|++|+++++ +++|+++|+++|++|++.|
T Consensus 225 ~~-~~a~~~~~i~~ai~--~~~~~v~~~s~~~~~-~yg~-~~v~~s~P~~ig~~Gv~~i~-~~~l~~~E~~~l~~s~~~i 298 (305)
T TIGR01763 225 YY-APAASVVEMVEAIL--KDRKRVLPCAAYLDG-QYGI-DGIYVGVPVILGKNGVEHIY-ELKLDQSELALLNKSAKIV 298 (305)
T ss_pred HH-HHHHHHHHHHHHHh--CCCCeEEEEEEEecc-cCCC-CceEEEEEEEEeCCeEEEEe-CCCCCHHHHHHHHHHHHHH
Confidence 54 46666666666666 588999999999999 7998 89999999999999999999 5999999999999999999
Q ss_pred HHHHHH
Q 013466 413 LAEKKC 418 (442)
Q Consensus 413 ~~~~~~ 418 (442)
++..++
T Consensus 299 ~~~~~~ 304 (305)
T TIGR01763 299 DENCKM 304 (305)
T ss_pred HHHHhc
Confidence 986553
No 28
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=6e-58 Score=458.09 Aligned_cols=304 Identities=23% Similarity=0.369 Sum_probs=265.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dADi 175 (442)
|||+|+||+|.+|+++++.|+..+++++ |.| +|.+.+.+++++.++|++|+........+++ ++++++++|||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~---v~l--vd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDi 75 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKE---INL--ISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDI 75 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCE---EEE--EECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCE
Confidence 6999999889999999999999998754 555 3333345889999999998753222223343 346899999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R 254 (442)
||+++|.|++||++|.+++..|+++++++++.|++++ |++++|+++||+|++|+++++.++ +|+ |+||+||.||++|
T Consensus 76 Viitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~~t~~~~~~~g-~~~~~viG~gt~LDs~R 153 (309)
T cd05294 76 VIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDVMTYKALKESG-FDKNRVFGLGTHLDSLR 153 (309)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHhcC-CCHHHEeeccchHHHHH
Confidence 9999999999999999999999999999999999986 999999999999999999999996 766 8999999999999
Q ss_pred HHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCch
Q 013466 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSA 334 (442)
Q Consensus 255 ~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss~ 334 (442)
++++||+++++++++|++ +|+||||++|||+||+++|+|+|+.+++... +++++++.++++++|++|++.||+++|
T Consensus 154 ~~~~la~~l~v~~~~v~~-~viGeHg~s~~~~~S~~~i~g~~~~~~~~~~---~~~~~~i~~~v~~~g~~i~~~kg~t~~ 229 (309)
T cd05294 154 FKVAIAKHFNVHISEVHT-RIIGEHGDSMVPLISSTSIGGIPIKRFPEYK---DFDVEKIVETVKNAGQNIISLKGGSEY 229 (309)
T ss_pred HHHHHHHHHCcChHHeEE-EEEecCCCceEeeeeecEECCEEHHHhhccc---HHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 999999999999999996 9999999999999999999999999986421 234667778888899999999999876
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCcc-CCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHH
Q 013466 335 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELL 413 (442)
Q Consensus 335 ~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~y-gip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~ 413 (442)
++|.++++.+.+|+ +|++.++|++|+++| +| |++ |+++|+||++|++|+++++ .++|+++|+++|++|++.|+
T Consensus 230 -~~a~~~~~ii~ail--~~~~~v~~vsv~~~g-~~~~~~-~~~~svP~~ig~~Gv~~i~-~l~l~~~E~~~l~~s~~~i~ 303 (309)
T cd05294 230 -GPASAISNLVRTIA--NDERRILTVSTYLEG-EIDGIR-DVCIGVPVKLGKNGIEEIV-PIEMDDDEREAFRKSAEIVK 303 (309)
T ss_pred -hHHHHHHHHHHHHH--CCCCeEEEEEEEECC-ccCCCC-CeEEEeEEEEcCCccEEEe-CCCCCHHHHHHHHHHHHHHH
Confidence 46666677777777 578999999999999 56 996 9999999999999999999 59999999999999999998
Q ss_pred HHHH
Q 013466 414 AEKK 417 (442)
Q Consensus 414 ~~~~ 417 (442)
+..+
T Consensus 304 ~~~~ 307 (309)
T cd05294 304 KYTR 307 (309)
T ss_pred HHHh
Confidence 7544
No 29
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=5.7e-56 Score=443.41 Aligned_cols=300 Identities=22% Similarity=0.378 Sum_probs=262.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dAD 174 (442)
|+||+|||| |.||+++++.++..++. + +.|+ |++++++++.++|+.|.........+++ ++++++++|||
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-e---v~L~----D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aD 72 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-D---VVLF----DIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSD 72 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-E---EEEE----ECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCC
Confidence 579999996 99999999999998764 3 6664 4466788999999998753333334554 46789999999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~ 253 (442)
+||+++|.|++||++|.+++.+|++++++++++|++++ |++++|++|||+|++|+++++++ ++|+ |+||+||.||++
T Consensus 73 iVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d~~~~~~~~~s-~~~~~~viG~gt~lds~ 150 (307)
T PRK06223 73 VVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVDAMTYVALKES-GFPKNRVIGMAGVLDSA 150 (307)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHh-CCCcccEEEeCCCcHHH
Confidence 99999999999999999999999999999999999996 99999999999999999999998 5665 899999999999
Q ss_pred HHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh--cCC
Q 013466 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK--WGR 331 (442)
Q Consensus 254 R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~--kG~ 331 (442)
|++++||+++++++++|++ +|+||||++++|+||+++|+|.|+.+++. ++.++++.++++.+++++++. +|+
T Consensus 151 r~~~~la~~l~v~~~~v~~-~viGehg~s~~p~~S~~~v~g~~~~~~~~-----~~~~~~l~~~v~~~~~~ii~~~~kg~ 224 (307)
T PRK06223 151 RFRTFIAEELNVSVKDVTA-FVLGGHGDSMVPLVRYSTVGGIPLEDLLS-----KEKLDEIVERTRKGGAEIVGLLKTGS 224 (307)
T ss_pred HHHHHHHHHhCcChhhCcc-cEEcCCCCcceEchhhCEECCEEHHHhCC-----hHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 9999999999999999996 89999999999999999999999998742 334667777788899999986 665
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
+. ++.|..+++.+.+++ .|++.+++++++++| +||+ +|++||+||++|++|+++++ ++.|+++|+++|++|++.
T Consensus 225 t~-~~~A~~~~~ii~ail--~~~~~~~~~~v~~~g-~yg~-~~~~~s~P~~i~~~Gv~~i~-~~~l~~~e~~~l~~s~~~ 298 (307)
T PRK06223 225 AY-YAPAASIAEMVEAIL--KDKKRVLPCSAYLEG-EYGV-KDVYVGVPVKLGKNGVEKII-ELELDDEEKAAFDKSVEA 298 (307)
T ss_pred hh-HHHHHHHHHHHHHHH--cCCCcEEEEEEEecC-cCCC-CCeEEEeEEEEeCCeEEEEe-CCCCCHHHHHHHHHHHHH
Confidence 54 446777788888877 478999999999999 6999 99999999999999999998 699999999999999999
Q ss_pred HHHHHHH
Q 013466 412 LLAEKKC 418 (442)
Q Consensus 412 l~~~~~~ 418 (442)
|++.++.
T Consensus 299 l~~~~~~ 305 (307)
T PRK06223 299 VKKLIEA 305 (307)
T ss_pred HHHHHHh
Confidence 9986653
No 30
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=5.9e-56 Score=444.02 Aligned_cols=301 Identities=23% Similarity=0.258 Sum_probs=258.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec--Cc-ccc
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NP-YEL 169 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~--~~-~ea 169 (442)
..+|.||+||||+|+||+++++.|+..++.++ +.| +|+ ++++++++||+|+.. ...+...+ ++ |++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~e---lvL--~Di----~~~~g~a~Dl~~~~~--~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSE---LSL--YDI----VGAPGVAADLSHIDT--PAKVTGYADGELWEKA 73 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCE---EEE--Eec----CCCcccccchhhcCc--CceEEEecCCCchHHH
Confidence 45688999999889999999999998887654 555 433 457899999999863 22333222 23 899
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHH----HHCCCCCc-cee
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL----KNAPSIPA-KNF 244 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~----k~s~~~p~-kvi 244 (442)
++|||+||+++|.|++||++|.+++..|++++++++++|.++ +|+++++++|||+|+++++++ +.+ ++|+ |+|
T Consensus 74 l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv~~~~~~~~~~~~s-g~p~~~vi 151 (321)
T PTZ00325 74 LRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNSTVPIAAETLKKAG-VYDPRKLF 151 (321)
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHhhhhhcc-CCChhhee
Confidence 999999999999999999999999999999999999999998 599999999999999999985 766 5665 899
Q ss_pred eccchhhHHHHHHHHHHHhCCCcCcccceEEEeecCC-CcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhH
Q 013466 245 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGG 323 (442)
Q Consensus 245 g~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~-t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~ 323 (442)
|+|+ |||+||+++||+++|++|++|++ |||||||+ +|||+||++ |+|+. .+++.++.++++++|+
T Consensus 152 G~g~-LDs~R~r~~la~~l~v~~~~V~~-~VlGeHGd~s~v~~~S~~---g~~l~---------~~~~~~i~~~v~~~g~ 217 (321)
T PTZ00325 152 GVTT-LDVVRARKFVAEALGMNPYDVNV-PVVGGHSGVTIVPLLSQT---GLSLP---------EEQVEQITHRVQVGGD 217 (321)
T ss_pred echh-HHHHHHHHHHHHHhCcChhheEE-EEEeecCCcccccchhcc---CCCCC---------HHHHHHHHHHHHHHHH
Confidence 9985 99999999999999999999995 99999999 899999998 77753 2346778888888999
Q ss_pred HHHHhc---CCCchHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCH
Q 013466 324 LLIKKW---GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDD 399 (442)
Q Consensus 324 eii~~k---G~ss~~s~A~~i~~aI~~~l~~-~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~ 399 (442)
+|++.| |++. ++.|.++++.+++|+.. +|++.+++++ +++| +||+ +|+|||+||++|++|++++++.++|++
T Consensus 218 ~Ii~~k~~kg~t~-~g~a~a~~~i~~ail~~~~~~~~v~~~~-~~~g-~yg~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~ 293 (321)
T PTZ00325 218 EVVKAKEGAGSAT-LSMAYAAAEWSTSVLKALRGDKGIVECA-FVES-DMRP-ECPFFSSPVELGKEGVERVLPIGPLNA 293 (321)
T ss_pred HHHhcccCCCCch-HHHHHHHHHHHHHHHhhcCCCCCeEEEE-EEec-CCCC-CCeEEEEEEEEcCCeeEEEcCCCCCCH
Confidence 999976 4444 55788888888888753 3578899985 9999 7997 899999999999999999994399999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 013466 400 YLRKRIAKTEQELLAEKKCVAHLTG 424 (442)
Q Consensus 400 ~E~~~L~~sa~~l~~~~~~~~~~~~ 424 (442)
+|+++|++|++.|++.++.+..|.+
T Consensus 294 ~E~~~l~~S~~~i~~~~~~~~~~~~ 318 (321)
T PTZ00325 294 YEEELLEAAVPDLKKNIEKGLEFAR 318 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988875
No 31
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=3.9e-55 Score=436.35 Aligned_cols=295 Identities=24% Similarity=0.375 Sum_probs=256.4
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCcEEE
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEWAL 177 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dADiVI 177 (442)
|+|||| |.||+.+++.|+..++. + +.|+ |++++++++.++|+.|.........++. ++++++++|||+||
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-e---V~L~----Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVI 71 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-D---VVLL----DIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-E---EEEE----eCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEE
Confidence 689996 99999999999998875 3 6664 3345678899999998753222234443 35689999999999
Q ss_pred EeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHHHH
Q 013466 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAK 256 (442)
Q Consensus 178 i~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R~~ 256 (442)
+++|.|++||++|.+++..|.+++++++++|++++ |++++|++|||+|++|+++++++ ++|+ |+||+||.||++|++
T Consensus 72 it~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~di~t~~~~~~s-~~~~~rviGlgt~lds~r~~ 149 (300)
T cd01339 72 ITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLDVMTYVAYKAS-GFPRNRVIGMAGVLDSARFR 149 (300)
T ss_pred EecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHh-CCCHHHEEEecchHHHHHHH
Confidence 99999999999999999999999999999999996 99999999999999999999998 5654 999999999999999
Q ss_pred HHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhc--CCCch
Q 013466 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKW--GRSSA 334 (442)
Q Consensus 257 ~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~k--G~ss~ 334 (442)
++||+++++++++|++ +|+|+||++++|+||+++|+|.|+.+++.+ ++++++.++++.++++|++.| |+++|
T Consensus 150 ~~la~~l~v~~~~v~~-~v~G~hg~~~~~~~s~~~v~g~~~~~~~~~-----~~~~~~~~~v~~~~~~ii~~k~~g~t~~ 223 (300)
T cd01339 150 YFIAEELGVSVKDVQA-MVLGGHGDTMVPLPRYSTVGGIPLTELITK-----EEIDEIVERTRNGGAEIVNLLKTGSAYY 223 (300)
T ss_pred HHHHHHhCCCccceEE-EEEeCCCCcceecceecEECCEEHHHhcCh-----HHHHHHHHHHHHHHHHHHhhcCCCchhH
Confidence 9999999999999996 899999999999999999999999988643 346778888888999999966 66665
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHH
Q 013466 335 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLA 414 (442)
Q Consensus 335 ~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~ 414 (442)
+.|.++++.+.+++ .|++.++|+|++++| +||++ ++|||+||++|++|+++++ ++.|+++|+++|++|++.|++
T Consensus 224 -~~a~~~~~i~~ail--~~~~~i~~~s~~~~g-~yg~~-~~~~s~P~~ig~~G~~~~~-~l~l~~~E~~~l~~s~~~l~~ 297 (300)
T cd01339 224 -APAAAIAEMVEAIL--KDKKRVLPCSAYLEG-EYGIK-DIFVGVPVVLGKNGVEKII-ELDLTDEEKEAFDKSVESVKE 297 (300)
T ss_pred -HHHHHHHHHHHHHH--cCCCcEEEEEEEecc-ccCCC-CeEEEEEEEEeCCeEEEEe-CCCCCHHHHHHHHHHHHHHHH
Confidence 35666666666666 478999999999999 79995 9999999999999999999 699999999999999999987
Q ss_pred HH
Q 013466 415 EK 416 (442)
Q Consensus 415 ~~ 416 (442)
..
T Consensus 298 ~~ 299 (300)
T cd01339 298 LI 299 (300)
T ss_pred Hh
Confidence 53
No 32
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-54 Score=432.62 Aligned_cols=298 Identities=21% Similarity=0.241 Sum_probs=251.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCc-ccccCCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INP-YELFEDA 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~-~eal~dA 173 (442)
|||+||||+|+||+++++.|.. .+... ++.| + |++ +..+++++|++|.. ....++.. .++ +++++|+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~---el~L--~--d~~-~~~~g~alDl~~~~--~~~~i~~~~~~d~~~~l~~~ 70 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGS---ELSL--Y--DIA-PVTPGVAVDLSHIP--TAVKIKGFSGEDPTPALEGA 70 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCcc---EEEE--E--ecC-CCCcceehhhhcCC--CCceEEEeCCCCHHHHcCCC
Confidence 6999999889999999999866 44433 2555 3 333 23678999999853 11233321 233 8999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHH----HHCCCCCc-ceeeccc
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL----KNAPSIPA-KNFHALT 248 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~----k~s~~~p~-kvig~gT 248 (442)
|+||+++|.+++||++|.+++..|++++++++++|++++ |+++++++|||+|+||++++ +.+ ++|+ |+||+|+
T Consensus 71 DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivivvsNP~D~~t~~~~~~~~~~s-g~p~~rvig~~~ 148 (312)
T PRK05086 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGIITNPVNTTVAIAAEVLKKAG-VYDKNKLFGVTT 148 (312)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchHHHHHHHHHHHHHhc-CCCHHHEEeeec
Confidence 999999999999999999999999999999999999995 99999999999999999987 877 5765 8999986
Q ss_pred hhhHHHHHHHHHHHhCCCcCcccceEEEeecCC-CcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHH
Q 013466 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIK 327 (442)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~-t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~ 327 (442)
||++|++++||+++|+++++|+. +||||||+ +|||+||++ +|.|+.+ +++.++.++++++|++|++
T Consensus 149 -Lds~R~~~~ia~~l~~~~~~v~~-~v~GeHg~~s~~p~~S~~--~g~~l~~---------~~~~~i~~~v~~~g~~ii~ 215 (312)
T PRK05086 149 -LDVIRSETFVAELKGKQPGEVEV-PVIGGHSGVTILPLLSQV--PGVSFTE---------QEVADLTKRIQNAGTEVVE 215 (312)
T ss_pred -HHHHHHHHHHHHHhCCChhheEE-EEEEecCCCceecccccc--CCccCCH---------HHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999995 99999975 999999999 8888732 3467788888889999999
Q ss_pred hc---CCCchHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHH
Q 013466 328 KW---GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRK 403 (442)
Q Consensus 328 ~k---G~ss~~s~A~~i~~aI~~~l~~-~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~ 403 (442)
.| |.+ ++++|.++++.+.+|+.+ .|+++++|++ +++| + |. +|+|||+||++|++|++++++.++|+++|++
T Consensus 216 ~k~~~g~t-~~~~a~a~~~~v~ai~~~~~~~~~v~~~~-~~~~-~-g~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~ 290 (312)
T PRK05086 216 AKAGGGSA-TLSMGQAAARFGLSLVRALQGEQGVVECA-YVEG-D-GK-YARFFAQPVLLGKNGVEERLPIGTLSAFEQN 290 (312)
T ss_pred cccCCCCc-hhhHHHHHHHHHHHHHhcCCCCCcEEEEE-EEec-c-CC-cceEEEEEEEEcCCeeEEEcCCCCCCHHHHH
Confidence 77 444 456888888888888865 4588899976 8888 4 75 7899999999999999999953399999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 013466 404 RIAKTEQELLAEKKCVAHLTG 424 (442)
Q Consensus 404 ~L~~sa~~l~~~~~~~~~~~~ 424 (442)
+|++|++.|+++++.+..|.+
T Consensus 291 ~l~~s~~~i~~~~~~g~~~~~ 311 (312)
T PRK05086 291 ALEGMLDTLKKDIALGEEFVN 311 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999988864
No 33
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=5e-53 Score=423.26 Aligned_cols=293 Identities=23% Similarity=0.266 Sum_probs=246.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc---ccccC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP---YELFE 171 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~---~eal~ 171 (442)
.+.||+||||+|+||+++++.|+.++++++ +.| +|+ ++ ++|+++||+|+... ..+...+++ |++++
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~e---l~L--~Di--~~--~~g~a~Dl~~~~~~--~~i~~~~~~~d~~~~l~ 85 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSE---LHL--YDI--AN--TPGVAADVSHINTP--AQVRGFLGDDQLGDALK 85 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCE---EEE--Eec--CC--CCeeEchhhhCCcC--ceEEEEeCCCCHHHHcC
Confidence 357999999889999999999999999864 555 433 33 78999999999742 133322234 89999
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh----HHHHHHHHHCCCCCc-ceeec
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN----TNALICLKNAPSIPA-KNFHA 246 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd----~lt~~~~k~s~~~p~-kvig~ 246 (442)
|||+||+++|.|++||++|.|++..|++|++++++++++++ |+++++++|||+| ++++++++.++ +|+ |+||+
T Consensus 86 ~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD~~~~i~t~~~~~~s~-~p~~~viG~ 163 (323)
T PLN00106 86 GADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVNSTVPIAAEVLKKAGV-YDPKKLFGV 163 (323)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCccccHHHHHHHHHHcCC-CCcceEEEE
Confidence 99999999999999999999999999999999999999995 9999999999999 89998988885 555 89999
Q ss_pred cchhhHHHHHHHHHHHhCCCcCcccceEEEeecC-CCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHH
Q 013466 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHS-TTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLL 325 (442)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG-~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~ei 325 (442)
++ ||++|+++++|+++|+++.+|++ +|+|||| ++|||+||++++ ..+ +..+++.++.++++++|++|
T Consensus 164 ~~-LDs~Rl~~~lA~~lgv~~~~V~~-~ViGeHg~~s~vp~~S~~~~----~~~------~~~~~~~~i~~~v~~~g~~I 231 (323)
T PLN00106 164 TT-LDVVRANTFVAEKKGLDPADVDV-PVVGGHAGITILPLLSQATP----KVS------FTDEEIEALTKRIQNGGTEV 231 (323)
T ss_pred ec-chHHHHHHHHHHHhCCChhheEE-EEEEeCCCccEeeehhccee----ccc------CCHHHHHHHHHHHHHHHHHH
Confidence 85 99999999999999999999996 9999996 599999999964 222 23345778888899999999
Q ss_pred HHhc---CCCchHHHHHHHHHHHHHhhcCC-CCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHH
Q 013466 326 IKKW---GRSSAASTAVSIVDAMKSLVTPT-PEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYL 401 (442)
Q Consensus 326 i~~k---G~ss~~s~A~~i~~aI~~~l~~~-d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E 401 (442)
++.| |.+. ++.|.++++++++|+.+. +++.++|++ +.+| +| .+++|||+||+||++|++++++.++|+++|
T Consensus 232 i~~k~~kg~t~-~~~a~a~~~ii~ail~~~~~~~~v~~~s-~~~~-~~--~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E 306 (323)
T PLN00106 232 VEAKAGAGSAT-LSMAYAAARFADACLRGLNGEADVVECS-YVQS-EV--TELPFFASKVRLGRNGVEEVLGLGPLSEYE 306 (323)
T ss_pred HhCccCCCCch-HHHHHHHHHHHHHHHhccCCCceEEEEE-EECc-cc--CCceEEEEEEEEcCCeeEEEcCCCCCCHHH
Confidence 9964 5544 568888888888888532 377899999 7777 55 234999999999999999999433999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013466 402 RKRIAKTEQELLAEKK 417 (442)
Q Consensus 402 ~~~L~~sa~~l~~~~~ 417 (442)
+++|++|++.|+++++
T Consensus 307 ~~~l~~S~~~i~~~~~ 322 (323)
T PLN00106 307 QKGLEALKPELKASIE 322 (323)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998654
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=8.6e-51 Score=397.89 Aligned_cols=258 Identities=34% Similarity=0.512 Sum_probs=226.4
Q ss_pred EEEEcCCCchHHHHHHHHHHcC--CCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC-cccEEEecCcccccCCCcE
Q 013466 99 IAVSGAAGMIANHLLFKLAAGE--VLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAEW 175 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~--l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~-~~~v~i~~~~~eal~dADi 175 (442)
|+||||+|.+|+++++.|+..+ ... +|.| + |++++++++.++||+|..... ..+++.+++.|++++|||+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~---el~L--~--D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDi 73 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAI---ELVL--Y--DIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADV 73 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcce---EEEE--E--eCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCE
Confidence 6899977999999999999988 432 2545 4 445588999999999997544 3456665556999999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R 254 (442)
||+++|.|++||++|.+++.+|++++++++++|+++| |++|+|++|||+|.+|+++++++ ++|+ |+||+|| ||++|
T Consensus 74 Vv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~~t~~~~~~s-g~~~~kviG~~~-ld~~r 150 (263)
T cd00650 74 VIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVDIITYLVWRYS-GLPKEKVIGLGT-LDPIR 150 (263)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHh-CCCchhEEEeec-chHHH
Confidence 9999999999999999999999999999999999996 99999999999999999999999 5654 8999999 99999
Q ss_pred HHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCch
Q 013466 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSA 334 (442)
Q Consensus 255 ~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss~ 334 (442)
+++++|+++++++++|+ .+|||+||++++|+||+++ +
T Consensus 151 ~~~~la~~l~v~~~~v~-~~v~G~hg~~~~~~~s~~~------------------------------------------~ 187 (263)
T cd00650 151 FRRILAEKLGVDPDDVK-VYILGEHGGSQVPDWSTVR------------------------------------------I 187 (263)
T ss_pred HHHHHHHHhCCCccceE-EEEEEcCCCceEeccccch------------------------------------------H
Confidence 99999999999999999 5999999999999999875 1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHH
Q 013466 335 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLA 414 (442)
Q Consensus 335 ~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~ 414 (442)
+..+..++++ |+ +|++.++|++++++| +||+|+|++||+||++|++|++++++ ++|+++|+++|+++++.++.
T Consensus 188 a~~~~~ii~a---i~--~~~~~~~~v~v~~~g-~ygi~~~~~~s~P~~i~~~Gi~~~~~-~~l~~~e~~~l~~s~~~~~~ 260 (263)
T cd00650 188 ATSIADLIRS---LL--NDEGEILPVGVRNNG-QIGIPDDVVVSVPCIVGKNGVEEPIE-VGLTDFELEKLQKSADTLKK 260 (263)
T ss_pred HHHHHHHHHH---HH--cCCCEEEEEEEEeCC-ccCCcCCEEEEEEEEEeCCceEEEec-CCCCHHHHHHHHHHHHHHHH
Confidence 2334455444 44 578999999999999 79998999999999999999999994 89999999999999999987
Q ss_pred HH
Q 013466 415 EK 416 (442)
Q Consensus 415 ~~ 416 (442)
.+
T Consensus 261 ~~ 262 (263)
T cd00650 261 EL 262 (263)
T ss_pred Hh
Confidence 54
No 35
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.6e-48 Score=368.65 Aligned_cols=305 Identities=23% Similarity=0.279 Sum_probs=257.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec---Cccccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---NPYELF 170 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~---~~~eal 170 (442)
.++.||+|+||+|+||+.++.+|..++++++ +.| ||+ ..+.|++.||+|+.+. ..++.++ +.++++
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~---LaL--YDi----~~~~GVaaDlSHI~T~--s~V~g~~g~~~L~~al 94 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLKLNPLVSE---LAL--YDI----ANTPGVAADLSHINTN--SSVVGFTGADGLENAL 94 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHhcCcccce---eee--eec----ccCCcccccccccCCC--CceeccCChhHHHHHh
Confidence 3468999999999999999999999999875 555 443 3578999999999754 3444444 357899
Q ss_pred CCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHH---HHHCCCCCcceeecc
Q 013466 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHAL 247 (442)
Q Consensus 171 ~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~---~k~s~~~p~kvig~g 247 (442)
++||+|||.||.||||||+|.||+..|+-|+++++..+.+.| |++.+.++|||+|...+++ +|..|.+++|.+.+.
T Consensus 95 ~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~c-P~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGV 173 (345)
T KOG1494|consen 95 KGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCC-PNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGV 173 (345)
T ss_pred cCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhC-ccceeEeecCcccccchHHHHHHHHcCCCCccceece
Confidence 999999999999999999999999999999999999999986 9999999999999887775 688889998777788
Q ss_pred chhhHHHHHHHHHHHhCCCc-CcccceEEEeecC-CCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHH
Q 013466 248 TRLDENRAKCQLALKAGVFY-DKVSNMTIWGNHS-TTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLL 325 (442)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~p-~~V~~~~ViG~HG-~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~ei 325 (442)
|.||..|+++++++.++++| ++++ ++|+|+|. .|.+|++|+.+ |... ++.+++++++.++|..|.|+
T Consensus 174 TtLDvVRA~tFv~~~~~~~p~~~v~-VPVIGGHaG~TIlPLlSQ~~----p~~~------~~~~~~~~Lt~RiQ~gGtEV 242 (345)
T KOG1494|consen 174 TTLDVVRANTFVAEVLNLDPAEDVD-VPVIGGHAGITIIPLLSQCK----PPFR------FTDDEIEALTHRIQNGGTEV 242 (345)
T ss_pred ehhhhhhHHHHHHHHhCCCchhcCC-cceecCcCCceEeeecccCC----Cccc------CCHHHHHHHHHHHHhCCceE
Confidence 99999999999999999999 5577 79999998 89999999986 4433 56778999999999999999
Q ss_pred HHhc-CCCch-HHHHHHHHHHHHHhhcCC-CCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHH
Q 013466 326 IKKW-GRSSA-ASTAVSIVDAMKSLVTPT-PEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR 402 (442)
Q Consensus 326 i~~k-G~ss~-~s~A~~i~~aI~~~l~~~-d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~ 402 (442)
++.| |..|+ +|+|++-+++..+++.+. .+..++.|+ |+....+++ .||+.|+++|++|++++....+|+++|+
T Consensus 243 V~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~eca-fV~s~~~~~---~fFaspv~Lg~~Gv~~v~~l~~lsd~E~ 318 (345)
T KOG1494|consen 243 VKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECA-FVASPVTEL---PFFATPVTLGKKGVEEVLGLGKLSDYEE 318 (345)
T ss_pred EEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEe-EEeccccCc---cceeceEEecCCceeeecCCCccCHHHH
Confidence 9854 66666 677776666665555542 345677776 444424655 5999999999999999998899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 013466 403 KRIAKTEQELLAEKKCVAHLTGE 425 (442)
Q Consensus 403 ~~L~~sa~~l~~~~~~~~~~~~~ 425 (442)
+.|+++..+|++.++.+..|...
T Consensus 319 ~~l~~~~~eLk~sI~KGv~F~~~ 341 (345)
T KOG1494|consen 319 KALEAAKPELKKSIEKGVTFVKS 341 (345)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhh
Confidence 99999999999999999998764
No 36
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=100.00 E-value=1e-35 Score=274.25 Aligned_cols=171 Identities=29% Similarity=0.425 Sum_probs=156.3
Q ss_pred chhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhh-ccCChHHHHHHHHHHhhhhHHHH
Q 013466 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD-HKWLEEGFTETIQKVRLRGGLLI 326 (442)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~-~~~~~~e~~~~~~~v~~~g~eii 326 (442)
|+||++||+++||+++|++|++|+ +|||||||+++||+||+++|+|+|+.++.+. ..+..++..++.++++.++++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~-~~ViGeHg~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVN-AYVIGEHGDSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEE-EEEEBSSSTTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceE-EEEEecCCcceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 789999999999999999999999 5999999999999999999999999888765 45677788899999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCc-eEEEEEEEEcCCCceeeccCCCCCHHHHHHH
Q 013466 327 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAED-IVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 405 (442)
Q Consensus 327 ~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~d-v~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L 405 (442)
+.||+++++++|.++++.+.+|+ .|.+.++|+|++++| +||++++ +|||+||++|++|+++++++++|+++|+++|
T Consensus 80 ~~k~g~t~~s~A~a~~~~v~ail--~~~~~i~~~sv~~~g-~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l 156 (174)
T PF02866_consen 80 KAKGGSTSYSIAAAAARIVEAIL--KDERRILPVSVYLDG-EYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQEKL 156 (174)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHH--TTHTEEEEEEEEEES-GGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHHHH
T ss_pred eeccccCcCCHHHHHHHHHHHHh--hcccccccceecccc-ccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHHHH
Confidence 99955555778999999999999 467999999999999 6999766 9999999999999999995599999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013466 406 AKTEQELLAEKKCVAHL 422 (442)
Q Consensus 406 ~~sa~~l~~~~~~~~~~ 422 (442)
++|+++|+++++.+.+|
T Consensus 157 ~~sa~~l~~~i~~~~~f 173 (174)
T PF02866_consen 157 KESAKELKKEIEKGLEF 173 (174)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999876
No 37
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=100.00 E-value=5.4e-31 Score=273.40 Aligned_cols=288 Identities=17% Similarity=0.170 Sum_probs=205.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCC----CCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGP----DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~----~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (442)
+||+|||| ||+.++.|+..-+-.. ..+|.|+|+|.++. +....++..+.+.. ....++..++|..+|++|
T Consensus 1 ~KI~iIGg----GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl-~~v~~l~~~~~~~~-g~~~~v~~ttD~~~Al~g 74 (425)
T cd05197 1 VKIAIIGG----GSSFTPELVSGLLKTPEELPISEVTLYDIDEERL-DIILTIAKRYVEEV-GADIKFEKTMDLEDAIID 74 (425)
T ss_pred CEEEEECC----chHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHH-HHHHHHHHHHHHhh-CCCeEEEEeCCHHHHhCC
Confidence 69999998 5555555554332221 13566655443222 22334455444332 222467888999999999
Q ss_pred CcEEEEe---CC---------cCCCCCC--------cHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHH
Q 013466 173 AEWALLI---GA---------KPRGPGM--------ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC 232 (442)
Q Consensus 173 ADiVIi~---ag---------~~~kpg~--------~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~ 232 (442)
|||||.+ +| +|.|.|. -......+|++++.++++.|+++| |+||+|++|||+|++|+++
T Consensus 75 ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin~TNP~di~t~a~ 153 (425)
T cd05197 75 ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLNFTNPAGEVTEAV 153 (425)
T ss_pred CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEecCChHHHHHHHH
Confidence 9999985 34 2345543 146677899999999999999996 9999999999999999999
Q ss_pred HHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEe-ecCCCcccccccccccCcchhhhhh----hcc--
Q 013466 233 LKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIK----DHK-- 305 (442)
Q Consensus 233 ~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG-~HG~t~vp~~S~a~I~G~p~~~~i~----~~~-- 305 (442)
++.++ ..|+||+|+. +.|+++++|+.+|+++++|+. +|+| ||| ++||.++++|+|+...+. +..
T Consensus 154 ~~~~p--~~rviG~c~~--~~r~~~~ia~~lgv~~~~v~~-~v~GlnHg----~~~s~~~~~G~~l~p~l~~~~~~~~~~ 224 (425)
T cd05197 154 RRYVP--PEKAVGLCNV--PIGVMEIVAKLLGESEEKVDW-QYAGLNHG----IWLNRVRYNGGDVTPKLDEWVEEKSKD 224 (425)
T ss_pred HHhCC--CCcEEEECCC--HHHHHHHHHHHhCCCHHHeEE-EEEeccCe----EeeEeEEECCeecHHHHHHHHhccCcc
Confidence 98752 2499999999 999999999999999999995 9999 997 999999999988874432 100
Q ss_pred -------------CCh--------------------HH-HHHHHHH----------HhhhhH---HH------------H
Q 013466 306 -------------WLE--------------------EG-FTETIQK----------VRLRGG---LL------------I 326 (442)
Q Consensus 306 -------------~~~--------------------~e-~~~~~~~----------v~~~g~---ei------------i 326 (442)
|.. ++ +.+.++. +..... +. +
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~ 304 (425)
T cd05197 225 WKTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVEL 304 (425)
T ss_pred ccccccccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChhhh
Confidence 000 00 0100000 000000 00 1
Q ss_pred HhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHH
Q 013466 327 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 406 (442)
Q Consensus 327 ~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~ 406 (442)
..++...++..|..|+++|. +|++.++.++|.++|.+-++|+|.++++||+++++|+.++. ..+|.+..+..++
T Consensus 305 ~~r~~~~~~e~a~~ii~ai~-----~~~~~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~-vg~lp~~~~~Li~ 378 (425)
T cd05197 305 IKRGGRKYSEAAIPLIRALL-----NDNGARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIK-VGPLDRFVKGLLR 378 (425)
T ss_pred hhcCCcccHHHHHHHHHHHH-----cCCCeEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceecc-cCCCCHHHHHHHH
Confidence 12244445788888988887 58899999999999988899999999999999999999876 5678776655544
No 38
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=99.98 E-value=5.3e-32 Score=241.40 Aligned_cols=141 Identities=31% Similarity=0.461 Sum_probs=126.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||+||||+|+||+++++.|+++++.++ |.| + |+++++++|+++||+|+.+....++.++.++|++++|||+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~e---i~L--~--D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADE---IVL--I--DINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSE---EEE--E--ESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCc---eEE--e--ccCcccceeeehhhhhhhhhcccccccccccccccccccEE
Confidence 6999999889999999999999998865 666 3 55667999999999999866556778888999999999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceee
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig 245 (442)
|+++|.||+||++|.+++..|++|+++++++|++++ |+++++++|||+|++|++++++++..|+|+||
T Consensus 74 vitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd~~t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 74 VITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVDVMTYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp EETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHHHHHHHHHHHHTSSGGGEEE
T ss_pred EEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHHHHHHHHHHhhCcCcccCcC
Confidence 999999999999999999999999999999999996 99999999999999999999999644458887
No 39
>PRK15076 alpha-galactosidase; Provisional
Probab=99.97 E-value=1.2e-29 Score=264.04 Aligned_cols=284 Identities=15% Similarity=0.111 Sum_probs=205.8
Q ss_pred CCEEEEEcCCCchHHHHHH--HHH-HcCCCCCCCceEEEeccccchhhhHH-HHHHHHhcccCC--CcccEEEecCcccc
Q 013466 96 MVNIAVSGAAGMIANHLLF--KLA-AGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFP--LLREVKIGINPYEL 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~--~L~-~~~l~~~~~~I~L~l~d~d~~~~~l~-g~a~DL~~~~~~--~~~~v~i~~~~~ea 169 (442)
|+||+|||| |.+|++.++ .++ ..++.+ .+|.|+ |+++++++ +.++ +++.... ...+++.+++.+++
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~--~evvLv----Did~er~~~~~~l-~~~~~~~~~~~~~i~~ttD~~ea 72 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRD--AEIALM----DIDPERLEESEIV-ARKLAESLGASAKITATTDRREA 72 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCC--CEEEEE----CCCHHHHHHHHHH-HHHHHHhcCCCeEEEEECCHHHH
Confidence 479999996 999999877 666 344433 236664 33445555 3444 4444311 12356666666899
Q ss_pred cCCCcEEEEeCCcC-CCCC--------------CcHHhH--------HHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 170 FEDAEWALLIGAKP-RGPG--------------MERAGL--------LDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 170 l~dADiVIi~ag~~-~kpg--------------~~r~dl--------l~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
++|||+||++++.+ ++++ ++|.+. +.+|++++++++++|+++| |+||+|++|||+|
T Consensus 73 l~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~-p~a~iin~tNP~d 151 (431)
T PRK15076 73 LQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVC-PDALLLNYVNPMA 151 (431)
T ss_pred hCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHC-CCeEEEEcCChHH
Confidence 99999999998876 4555 567787 9999999999999999996 9999999999999
Q ss_pred HHHHHHHHHCCCCC-cceeecc-chhhHHHHHHHHHHHhCCCcCcccceEEEe-ecCCCcccccccccccCcchhhhhhh
Q 013466 227 TNALICLKNAPSIP-AKNFHAL-TRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD 303 (442)
Q Consensus 227 ~lt~~~~k~s~~~p-~kvig~g-T~LDs~R~~~~lA~~lgv~p~~V~~~~ViG-~HG~t~vp~~S~a~I~G~p~~~~i~~ 303 (442)
++|+++++ +| .|+||+| +.+|+. +.+|+.+|+++++|+. ++.| || +.|+.+.+.+|+++...+.+
T Consensus 152 ivt~~~~~----~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~-~~~GlNH----~~W~~~~~~~G~D~~p~l~~ 219 (431)
T PRK15076 152 MNTWAMNR----YPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRY-RCAGINH----MAWYLELERKGEDLYPELRA 219 (431)
T ss_pred HHHHHHhc----CCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEE-EEEeecc----hhhheeeeECCcchHHHHHH
Confidence 99999873 33 4999999 999988 6899999999999995 8899 99 89999999888766533211
Q ss_pred ---------------------------------c--cCC----h-HHHHHHHH---HHhhhh-------HHHH-HhcCC-
Q 013466 304 ---------------------------------H--KWL----E-EGFTETIQ---KVRLRG-------GLLI-KKWGR- 331 (442)
Q Consensus 304 ---------------------------------~--~~~----~-~e~~~~~~---~v~~~g-------~eii-~~kG~- 331 (442)
+ .|. . +++..... ....+. .+.. ...+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (431)
T PRK15076 220 AAAEGQTRCQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAE 299 (431)
T ss_pred HHhccCchhcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCC
Confidence 0 011 0 11111100 000011 1111 22233
Q ss_pred ----CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHH
Q 013466 332 ----SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 406 (442)
Q Consensus 332 ----ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~ 406 (442)
..++..|..|+++|. +|++.++.++|.++|..-++|+|.++++||.++++|+.++. ..+|.+..+..++
T Consensus 300 ~~~~~~~~e~a~~ii~ai~-----~~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~-~g~lP~~~~~l~~ 372 (431)
T PRK15076 300 RIEIKRSREYASTIIEAIE-----TGEPSVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTK-VGDLPPQLAALNR 372 (431)
T ss_pred ccccccchHHHHHHHHHHh-----cCCceEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeee-cCCCCHHHHHHHH
Confidence 224677888888877 58889999999999988899999999999999999999986 5688887777654
No 40
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.97 E-value=9.4e-29 Score=256.26 Aligned_cols=284 Identities=17% Similarity=0.171 Sum_probs=203.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-----CCCCCCCceEEEeccccchhhhHHH---HHHHHhcccCCCcccEEEecCccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG-----EVLGPDQPIALKLLGSERSLQALEG---VAMELEDSLFPLLREVKIGINPYE 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~-----~l~~~~~~I~L~l~d~d~~~~~l~g---~a~DL~~~~~~~~~~v~i~~~~~e 168 (442)
+||+|||| ||+.++.|+.. ..++ ..+|.|+ |+|. +++++. .+.++.+.. ....++..+++..+
T Consensus 1 ~KI~iIGa----GS~~tp~li~~l~~~~~~l~-~~ei~L~--Did~-~~rl~~v~~~~~~~~~~~-~~~~~v~~t~d~~~ 71 (419)
T cd05296 1 MKLTIIGG----GSSYTPELIEGLIRRYEELP-VTELVLV--DIDE-EEKLEIVGALAKRMVKKA-GLPIKVHLTTDRRE 71 (419)
T ss_pred CEEEEECC----chHhHHHHHHHHHhccccCC-CCEEEEe--cCCh-HHHHHHHHHHHHHHHHhh-CCCeEEEEeCCHHH
Confidence 69999998 44444444433 2222 1346664 4442 455543 333333222 12236777899999
Q ss_pred ccCCCcEEEEeCCcCCCCCCcHHh--------------------HHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHH
Q 013466 169 LFEDAEWALLIGAKPRGPGMERAG--------------------LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~r~d--------------------ll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l 228 (442)
|++|||+||++.+.++.+++++.+ ...+|++++.+++++|+++| |+||+|++|||+|++
T Consensus 72 al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~-Pda~lin~TNP~~iv 150 (419)
T cd05296 72 ALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELA-PDAWLINFTNPAGIV 150 (419)
T ss_pred HhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHC-CCeEEEEecCHHHHH
Confidence 999999999987766655554443 47899999999999999996 999999999999999
Q ss_pred HHHHHHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEe-ecCCCcccccccccccCcchhhhhhh----
Q 013466 229 ALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD---- 303 (442)
Q Consensus 229 t~~~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG-~HG~t~vp~~S~a~I~G~p~~~~i~~---- 303 (442)
|+++++.+ +.|+||+|+. +.|+++++|+.+|+++++|+. +|+| || +-|+.+.+.+|+++...+.+
T Consensus 151 t~a~~k~~---~~rviGlc~~--~~r~~~~ia~~lg~~~~~v~~-~v~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~ 220 (419)
T cd05296 151 TEAVLRHT---GDRVIGLCNV--PIGLQRRIAELLGVDPEDVFI-DYAGLNH----LGWLRRVLLDGEDVLPELLEDLAA 220 (419)
T ss_pred HHHHHHhc---cCCEEeeCCc--HHHHHHHHHHHhCCCHHHceE-EEEeccc----ceeeeeeeECCcccHHHHHHHhhh
Confidence 99998876 4699999988 699999999999999999995 9999 99 88999998888766542211
Q ss_pred -------ccCCh--------------------HH-HHHHHHHHhhhh-------HH---------------HHHhcCCCc
Q 013466 304 -------HKWLE--------------------EG-FTETIQKVRLRG-------GL---------------LIKKWGRSS 333 (442)
Q Consensus 304 -------~~~~~--------------------~e-~~~~~~~v~~~g-------~e---------------ii~~kG~ss 333 (442)
..|.. ++ .++....-..++ .+ .+..+++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~~ 300 (419)
T cd05296 221 LLSFEEGLLFGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGAG 300 (419)
T ss_pred ccccccccchHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCcc
Confidence 00110 11 111010000011 01 112345555
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHH
Q 013466 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 406 (442)
Q Consensus 334 ~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~ 406 (442)
|+..|..++++|. +|++.++.++|.++|..-++|+|.++++||.++++|+.++- ..+|.+..+..++
T Consensus 301 y~e~a~~ii~ai~-----~~~~~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~-vg~lP~~~~~l~~ 367 (419)
T cd05296 301 YSEAALALISAIY-----NDKGDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLP-VGPLPPAILGLIQ 367 (419)
T ss_pred hHHHHHHHHHHHh-----cCCCcEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceecc-CCCCCHHHHHHHH
Confidence 6788888988887 58889999999999988899999999999999999999875 5678887776654
No 41
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.96 E-value=4.4e-27 Score=244.68 Aligned_cols=285 Identities=14% Similarity=0.125 Sum_probs=196.3
Q ss_pred CEEEEEcCCCchHHHHHHHHH----HcC-CCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC
Q 013466 97 VNIAVSGAAGMIANHLLFKLA----AGE-VLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~----~~~-l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~ 171 (442)
|||+|||| ||+.++.|+ ... .++ ..+|+|+|+|.++. +....++..+.+.. ....++..++|..+|++
T Consensus 1 ~KI~iIGa----GS~~tp~li~~l~~~~~~l~-~~ei~L~DId~~rl-~~v~~l~~~~~~~~-g~~~~v~~Ttdr~eAl~ 73 (437)
T cd05298 1 FKIVIAGG----GSTYTPGIVKSLLDRKEDFP-LRELVLYDIDAERQ-EKVAEAVKILFKEN-YPEIKFVYTTDPEEAFT 73 (437)
T ss_pred CeEEEECC----cHHHHHHHHHHHHhCcccCC-CCEEEEECCCHHHH-HHHHHHHHHHHHhh-CCCeEEEEECCHHHHhC
Confidence 69999998 444555444 331 122 14567755443221 22344555444332 22346788899999999
Q ss_pred CCcEEEEe---CC---------cCCCCCC---c-----HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHH
Q 013466 172 DAEWALLI---GA---------KPRGPGM---E-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231 (442)
Q Consensus 172 dADiVIi~---ag---------~~~kpg~---~-----r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~ 231 (442)
|||+||.+ +| +|.|+|+ + ......||++++.++++.|+++| |+||+|++|||++++|++
T Consensus 74 gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~-pda~lin~tNP~~~vt~~ 152 (437)
T cd05298 74 DADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWILNYSNPAAIVAEA 152 (437)
T ss_pred CCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHH
Confidence 99999985 34 2445554 2 35677899999999999999996 999999999999999999
Q ss_pred HHHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEe-ecCCCccccccccccc-Ccchhhhhh----hcc
Q 013466 232 CLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARIN-GLPVKEIIK----DHK 305 (442)
Q Consensus 232 ~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG-~HG~t~vp~~S~a~I~-G~p~~~~i~----~~~ 305 (442)
+++..+ ..|+||.|.. ..-++..+|+.+|+++++|+. -+.| || +.|+.+.+.+ |+++...+. +..
T Consensus 153 ~~~~~~--~~kviGlC~~--~~~~~~~la~~lg~~~~~v~~-~~~GlNH----~~w~~~~~~~~G~D~~p~l~e~~~~~~ 223 (437)
T cd05298 153 LRRLFP--NARILNICDM--PIAIMDSMAAILGLDRKDLEP-DYFGLNH----FGWFTKIYDKQGEDLLPKLREHVKENG 223 (437)
T ss_pred HHHHCC--CCCEEEECCc--HHHHHHHHHHHhCCCHHHceE-EEEeecc----hhhhhheEECCCCchHHHHHHHHhccC
Confidence 988732 2489999988 777889999999999999994 7799 99 8889999888 887664332 111
Q ss_pred CC--------------hHH-----H------------------H-HHHHHHh-----------hhhHHHH----------
Q 013466 306 WL--------------EEG-----F------------------T-ETIQKVR-----------LRGGLLI---------- 326 (442)
Q Consensus 306 ~~--------------~~e-----~------------------~-~~~~~v~-----------~~g~eii---------- 326 (442)
|. .+- + . +..++.. ....+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~ 303 (437)
T cd05298 224 YLPPDSDEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETG 303 (437)
T ss_pred CCcccccccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcC
Confidence 11 000 0 0 0001100 0000110
Q ss_pred -----HhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCcc-CCCCceEEEEEEEEcCCCceeeccCCCCCHH
Q 013466 327 -----KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDY 400 (442)
Q Consensus 327 -----~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~y-gip~dv~~svPv~lg~~Gv~~i~~~~~L~~~ 400 (442)
+.++. .|+..+..++++|. +|++.++++||+++| .| ++|+|+++|+||+||++|+.++. ..+|.+.
T Consensus 304 ~~~~~~~~~~-~ya~~a~~ii~aI~-----~d~~~~~~vnv~n~G-~i~nL~~d~~vevP~~v~~~Gi~pi~-vg~lP~~ 375 (437)
T cd05298 304 TAEGSTFHVD-VHGEYIVDLAASIA-----YNTKERFLVIVENNG-AIPNLPDDAMVEVPAYIGSNGPEPLV-VGKIPTF 375 (437)
T ss_pred Chhhhhhhcc-chHHHHHHHHHHHH-----cCCCeEEEEEeecCC-ccCCCCCCcEEEEEEEEeCCCceecc-cCCCCHH
Confidence 01111 13555666666665 589999999999999 56 47899999999999999999986 5688887
Q ss_pred HHHHHH
Q 013466 401 LRKRIA 406 (442)
Q Consensus 401 E~~~L~ 406 (442)
....++
T Consensus 376 ~~~l~~ 381 (437)
T cd05298 376 YKGLME 381 (437)
T ss_pred HHHHHH
Confidence 777654
No 42
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.96 E-value=6.8e-27 Score=243.49 Aligned_cols=286 Identities=17% Similarity=0.109 Sum_probs=211.8
Q ss_pred CEEEEEcCCCchHHHHHH--HHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC--CcccEEEecCcccccC
Q 013466 97 VNIAVSGAAGMIANHLLF--KLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LLREVKIGINPYELFE 171 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~--~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~--~~~~v~i~~~~~eal~ 171 (442)
+||+|||| |.+|++++. .++.. .+.+ .+|.|+ |+++++++....++.+.... ...+++.+++.+++++
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g--~eV~L~----Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~ 73 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSG--STIALM----DIDEERLETVEILAKKIVEELGAPLKIEATTDRREALD 73 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCC--CEEEEE----CCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhc
Confidence 58999996 999999877 56544 4333 246664 45567788888777655321 2235666777789999
Q ss_pred CCcEEEEeCCcCCCCCCcH----------------------HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHH
Q 013466 172 DAEWALLIGAKPRGPGMER----------------------AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r----------------------~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt 229 (442)
|||+||++.+.+..++.++ .....+|++++.++++.+.++| |++|++++|||++++|
T Consensus 74 ~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~-p~a~~i~~tNPv~i~t 152 (423)
T cd05297 74 GADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELC-PDAWLLNYANPMAELT 152 (423)
T ss_pred CCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHC-CCCEEEEcCChHHHHH
Confidence 9999999887655555444 5677899999999999999996 9999999999999999
Q ss_pred HHHHHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEe-ecCCCcccccccccccCcchhhhhhh---c-
Q 013466 230 LICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD---H- 304 (442)
Q Consensus 230 ~~~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG-~HG~t~vp~~S~a~I~G~p~~~~i~~---~- 304 (442)
+++++.++ .|+||+|+. +.|+++.+|+.+|+++++|+. +++| || +.||...+.+|+++...+.+ .
T Consensus 153 ~~~~k~~~---~rviG~c~~--~~~~~~~~a~~l~~~~~~v~~-~~~GlNH----~~w~~~~~~~G~d~~p~l~~~~~~~ 222 (423)
T cd05297 153 WALNRYTP---IKTVGLCHG--VQGTAEQLAKLLGEPPEEVDY-QVAGINH----MAWLLKFEYNGEDLYPLLDEWIEEG 222 (423)
T ss_pred HHHHHhCC---CCEEEECCc--HHHHHHHHHHHhCCCHHHeEE-EEEeecc----HhhhhhheECCcchHHHHHHHHhcc
Confidence 99999885 599999988 999999999999999999995 8999 99 88999998888766543321 0
Q ss_pred --------cCC-----------h---H---H------HH-HHHHHHh----h-------hh---HH-H----------HH
Q 013466 305 --------KWL-----------E---E---G------FT-ETIQKVR----L-------RG---GL-L----------IK 327 (442)
Q Consensus 305 --------~~~-----------~---~---e------~~-~~~~~v~----~-------~g---~e-i----------i~ 327 (442)
.|. . . + .. +.+.... . .. +. . ..
T Consensus 223 ~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (423)
T cd05297 223 SEEWDQLSPVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEE 302 (423)
T ss_pred CccchhcccchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhccchhcchh
Confidence 010 0 0 0 00 0000000 0 00 00 0 01
Q ss_pred hcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHH
Q 013466 328 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 406 (442)
Q Consensus 328 ~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~ 406 (442)
..+...++..|..++++|. +|++.++.++|.++|..-++|+|.++++||.++++|++++- ..+|.+..+..++
T Consensus 303 ~~~~~~~~e~a~~ii~ai~-----~~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~-~g~lp~~~~~l~~ 375 (423)
T cd05297 303 LDPVKRSGEYASPIIEALV-----TGKPRRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEK-IGPLPPQLAALIR 375 (423)
T ss_pred ccccccchHHHHHHHHHHh-----cCCceEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceecc-cCCCCHHHHHHHH
Confidence 1222234677888888887 58899999999999988899999999999999999999876 5788777666554
No 43
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.94 E-value=3.8e-25 Score=226.25 Aligned_cols=289 Identities=18% Similarity=0.203 Sum_probs=204.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCC----CceEEEeccccchhhhHH---HHHHHHhcccCCCcccEEEecCcc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPD----QPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPY 167 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~----~~I~L~l~d~d~~~~~l~---g~a~DL~~~~~~~~~~v~i~~~~~ 167 (442)
++.||+|||| ||+..+.++.+.+...+ .++.| +|+| +++++ .++..+-+.. ....++..+++..
T Consensus 2 ~~~KI~iIGg----GSt~tp~~v~g~l~~~e~l~~~el~L--~Did--~~r~~~i~~~~~~~v~~~-g~~~kv~~ttd~~ 72 (442)
T COG1486 2 KKFKIVIIGG----GSTYTPKLLLGDLARTEELPVRELAL--YDID--EERLKIIAILAKKLVEEA-GAPVKVEATTDRR 72 (442)
T ss_pred CcceEEEECC----CccccHHHHHHHHhcCccCCcceEEE--EeCC--HHHHHHHHHHHHHHHHhh-CCCeEEEEecCHH
Confidence 4579999998 66666666655553321 24555 4443 34444 1222222221 2224677789999
Q ss_pred cccCCCcEEEEe---CC---------cCCCCCCc--------HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH
Q 013466 168 ELFEDAEWALLI---GA---------KPRGPGME--------RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (442)
Q Consensus 168 eal~dADiVIi~---ag---------~~~kpg~~--------r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~ 227 (442)
+||+|||||+.+ +| +|.|+|.- ......|+++++-+|++.|+++| |+||+|++|||+.+
T Consensus 73 eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~-P~Aw~lNytNP~~~ 151 (442)
T COG1486 73 EALEGADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVC-PNAWMLNYTNPAAI 151 (442)
T ss_pred HHhcCCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhC-CCceEEeccChHHH
Confidence 999999999985 33 35566642 34455799999999999999997 99999999999999
Q ss_pred HHHHHHHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCc-CcccceEEEe-ecCCCcccccccccccCcchhhhhhh--
Q 013466 228 NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY-DKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD-- 303 (442)
Q Consensus 228 lt~~~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p-~~V~~~~ViG-~HG~t~vp~~S~a~I~G~p~~~~i~~-- 303 (442)
+|.++.+..+. -|+||.|.. ..-....||+.||+.+ ++++ .-+.| || +.||..++.+|.++..-+.+
T Consensus 152 vTeAv~r~~~~--~K~VGlCh~--~~g~~~~lAe~L~~~~~~~l~-~~~aGlNH----~~w~~~~~~~G~d~~p~l~~~~ 222 (442)
T COG1486 152 VTEAVRRLYPK--IKIVGLCHG--PIGIAMELAEVLGLEPREDLR-YRVAGLNH----MVWILRVRDDGEDLYPELLEAL 222 (442)
T ss_pred HHHHHHHhCCC--CcEEeeCCc--hHHHHHHHHHHhCCCchhcee-EEEeechh----hhhhhHhhhcCccchHHHHHHH
Confidence 99999987742 299999988 7888899999999975 9999 47799 99 89999999888655432211
Q ss_pred --c--------------cCCh---------------------HHHH----HHH-------HHHhhhhHH-----------
Q 013466 304 --H--------------KWLE---------------------EGFT----ETI-------QKVRLRGGL----------- 324 (442)
Q Consensus 304 --~--------------~~~~---------------------~e~~----~~~-------~~v~~~g~e----------- 324 (442)
. .|.. .++. ... +.+.++.-+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~ 302 (442)
T COG1486 223 EEGGSPSEPENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELK 302 (442)
T ss_pred hccccCCccccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhh
Confidence 0 0000 0000 000 000000000
Q ss_pred ----HHHhcCCC--chHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCC
Q 013466 325 ----LIKKWGRS--SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFD 398 (442)
Q Consensus 325 ----ii~~kG~s--s~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~ 398 (442)
..++++.+ .++..|..|+++|. +|++.++.++|.++|.+-++|+|.++++||+++++|++++. ...|.
T Consensus 303 ~~p~~~~~~~~~~~~~~e~a~~ii~Ai~-----~~~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~-~g~lP 376 (442)
T COG1486 303 EKPEELEKRIGAGKYSSEYASNIINAIE-----NNKPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLA-VGDLP 376 (442)
T ss_pred cCchhhhhcCCcccccHHHHHHHHHHHh-----cCCceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCcccc-cCCCC
Confidence 01233443 45778889988888 68999999999999998999999999999999999999977 79999
Q ss_pred HHHHHHHHHH
Q 013466 399 DYLRKRIAKT 408 (442)
Q Consensus 399 ~~E~~~L~~s 408 (442)
+.-+..++..
T Consensus 377 ~~~~~l~~~~ 386 (442)
T COG1486 377 EFVKGLMHTN 386 (442)
T ss_pred HHHHHHHHHH
Confidence 9888866543
No 44
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.72 E-value=3.9e-17 Score=150.98 Aligned_cols=156 Identities=19% Similarity=0.131 Sum_probs=110.2
Q ss_pred EEEEEcCCCchHHH--HHHHHHHcCCCCCCCceEEEeccccchhhhHH---HHHHHHhcccCCCcccEEEecCcccccCC
Q 013466 98 NIAVSGAAGMIANH--LLFKLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYELFED 172 (442)
Q Consensus 98 KI~IIGA~G~VG~~--la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~---g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (442)
||+|||| |.+-+. +...|...+-++. .+|.|+| +| +++++ ..+..+.... ....++..++|..+|++|
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~-~ei~L~D--id--~~RL~~~~~~~~~~~~~~-~~~~~v~~ttd~~eAl~g 73 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELSG-SEIVLMD--ID--EERLEIVERLARRMVEEA-GADLKVEATTDRREALEG 73 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTSTE-EEEEEE---SC--HHHHHHHHHHHHHHHHHC-TTSSEEEEESSHHHHHTT
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCCC-cEEEEEc--CC--HHHHHHHHHHHHHHHHhc-CCCeEEEEeCCHHHHhCC
Confidence 8999997 555444 2223444343432 3455544 33 34444 4444444333 223467889999999999
Q ss_pred CcEEEEeC---C---------cCCCCCCc----------HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHH
Q 013466 173 AEWALLIG---A---------KPRGPGME----------RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (442)
Q Consensus 173 ADiVIi~a---g---------~~~kpg~~----------r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~ 230 (442)
||+||.+. | .|.|.|.. ......|+++++.++++.|+++| |+||+||+|||+..+|.
T Consensus 74 ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~-PdAw~iNytNP~~~vt~ 152 (183)
T PF02056_consen 74 ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELC-PDAWLINYTNPMGIVTE 152 (183)
T ss_dssp ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHT-TTSEEEE-SSSHHHHHH
T ss_pred CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEeccChHHHHHH
Confidence 99999963 2 46777653 35677899999999999999997 99999999999999999
Q ss_pred HHHHHCCCCCcceeeccchhhHHHHHHHHHHHhCC
Q 013466 231 ICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGV 265 (442)
Q Consensus 231 ~~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv 265 (442)
++.+..+.. |++|.|.. ..-+...+|+.||.
T Consensus 153 a~~r~~~~~--k~vGlCh~--~~~~~~~la~~L~~ 183 (183)
T PF02056_consen 153 ALSRYTPKI--KVVGLCHG--PQGTRRQLAKLLGM 183 (183)
T ss_dssp HHHHHSTTS--EEEEE-SH--HHHHHHHHHHHHT-
T ss_pred HHHHhCCCC--CEEEECCC--HHHHHHHHHHHhCc
Confidence 999987544 89999988 67788889998873
No 45
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.33 E-value=1.4e-06 Score=80.90 Aligned_cols=101 Identities=19% Similarity=0.164 Sum_probs=63.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHH---HHHHH-Hhcc----cC------CCcccEEEe
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE---GVAME-LEDS----LF------PLLREVKIG 163 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~---g~a~D-L~~~----~~------~~~~~v~i~ 163 (442)
||+|||| |.+|..++..++..|. ++.|++. +.+.++ ....+ +... .. ....+++++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~-----~V~l~d~----~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 70 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY-----EVTLYDR----SPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT 70 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS-----EEEEE-S----SHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC-----cEEEEEC----ChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc
Confidence 7999996 9999999999999985 4777543 333322 12111 1100 00 012367776
Q ss_pred cCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 164 ~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
++ ++++.|||+||-+. .++.++-+++...|.+++.|++++ .||..
T Consensus 71 ~d-l~~~~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTS 115 (180)
T PF02737_consen 71 TD-LEEAVDADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTS 115 (180)
T ss_dssp SS-GGGGCTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--S
T ss_pred cC-HHHHhhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCC
Confidence 54 55666999999873 235788889999999998788887 67654
No 46
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.27 E-value=3.9e-06 Score=83.55 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=67.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHH----HhcccC-C---------Cccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME----LEDSLF-P---------LLRE 159 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~D----L~~~~~-~---------~~~~ 159 (442)
..+.||+|||| |.+|..+|..++..|. ++.|++. +.+.++..... +..... . ...+
T Consensus 3 ~~~~~V~ViGa-G~mG~~iA~~~a~~G~-----~V~l~d~----~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~ 72 (286)
T PRK07819 3 DAIQRVGVVGA-GQMGAGIAEVCARAGV-----DVLVFET----TEELATAGRNRIEKSLERAVSRGKLTERERDAALAR 72 (286)
T ss_pred CCccEEEEEcc-cHHHHHHHHHHHhCCC-----EEEEEEC----CHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhC
Confidence 34569999995 9999999999999885 3667543 33333321111 110000 0 1124
Q ss_pred EEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhh-CCCeEEEEeCCchh
Q 013466 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA-SRNVKVIVVGNPCN 226 (442)
Q Consensus 160 v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a-~p~a~vivvtNPvd 226 (442)
++.+ ++++++++||+||-+. .++.++-+++-..+.++| .|++++ +||...
T Consensus 73 l~~~-~~~~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~ 123 (286)
T PRK07819 73 LRFT-TDLGDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSS 123 (286)
T ss_pred eEee-CCHHHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCC
Confidence 5554 4568899999999883 335677777777888886 577777 666543
No 47
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.22 E-value=7.1e-06 Score=82.94 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=70.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHH-------HHhcc-cC--CCcccEEEecC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-------ELEDS-LF--PLLREVKIGIN 165 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~-------DL~~~-~~--~~~~~v~i~~~ 165 (442)
..||+|||| |.+|+.++..++..|. ++.+++. +.+.++.... .+... .. ....+++..++
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~-----~V~l~D~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 76 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGL-----DVVAWDP----APGAEAALRANVANAWPALERQGLAPGASPARLRFVAT 76 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC-----eEEEEeC----CHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCC
Confidence 468999995 9999999999999885 3666543 3232221111 11100 00 01124566566
Q ss_pred cccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHH
Q 013466 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC 232 (442)
Q Consensus 166 ~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~ 232 (442)
..+++++||+|+-+.- +|.++-+++-..+.+++.|++ |+.||.......-+
T Consensus 77 l~~av~~aDlViEavp--------------E~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s~l 127 (321)
T PRK07066 77 IEACVADADFIQESAP--------------EREALKLELHERISRAAKPDA--IIASSTSGLLPTDF 127 (321)
T ss_pred HHHHhcCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHHHH
Confidence 6688999999998732 345667777788888886777 55888875543333
No 48
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.08 E-value=1.4e-05 Score=80.02 Aligned_cols=146 Identities=16% Similarity=0.131 Sum_probs=88.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH-hccc-----CC-----CcccEEEec
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL-EDSL-----FP-----LLREVKIGI 164 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL-~~~~-----~~-----~~~~v~i~~ 164 (442)
.+||+|||| |.+|..+|+.++..|+ ++.|.+...+. .++..+..... .... .. .+..++. +
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~-----~V~l~D~~~~~-~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~-~ 74 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY-----DVVLKDISPEA-LERALAYIEKNLEKLVEKGKLTEEEADAALARITP-T 74 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC-----ceEEEeCCHHH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccc-c
Confidence 469999996 9999999999999664 37775433111 11111111111 1100 00 0112232 4
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCccee
Q 013466 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNF 244 (442)
Q Consensus 165 ~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvi 244 (442)
.++++++|||+||-+ .-+|.++-+++-..+.++++|++++ .||...+.-..+.+.. ..|.|++
T Consensus 75 ~~~~~l~~~DlVIEA--------------v~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl~it~ia~~~-~rper~i 137 (307)
T COG1250 75 TDLAALKDADLVIEA--------------VVEDLELKKQVFAELEALAKPDAIL--ASNTSSLSITELAEAL-KRPERFI 137 (307)
T ss_pred CchhHhccCCEEEEe--------------ccccHHHHHHHHHHHHhhcCCCcEE--eeccCCCCHHHHHHHh-CCchhEE
Confidence 467799999999987 3456788899999999998889988 8998754332232333 2333443
Q ss_pred e------------------ccchhhHHHHHHHHHHHhCCC
Q 013466 245 H------------------ALTRLDENRAKCQLALKAGVF 266 (442)
Q Consensus 245 g------------------~gT~LDs~R~~~~lA~~lgv~ 266 (442)
| --|.-++...-..+++++|-.
T Consensus 138 G~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 138 GLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred EEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 3 344446666666777887733
No 49
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.07 E-value=2e-05 Score=78.23 Aligned_cols=104 Identities=21% Similarity=0.265 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHH---Hhcc---cCCC---------cccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME---LEDS---LFPL---------LREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~D---L~~~---~~~~---------~~~v 160 (442)
+.||+|||+ |.+|..++..|+..|. ++.+++. +.+.++..... +.+. .... ..++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~-----~V~l~d~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF-----DVTIYDI----SDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRI 72 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC-----eEEEEeC----CHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCe
Confidence 469999995 9999999999998874 3666543 33333221111 1100 0000 1245
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 161 ~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+.+++..+++++||+||.+.. .+.++.+++.+.+.+++.++++| ++|..
T Consensus 73 ~~~~d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~sntS 121 (287)
T PRK08293 73 TLTTDLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF--ATNSS 121 (287)
T ss_pred EEeCCHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE--EECcc
Confidence 666665678999999999833 23556677777777776566655 44543
No 50
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.05 E-value=1.2e-05 Score=79.47 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHH-------HHHHHhccc-C------CCcccEE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-------VAMELEDSL-F------PLLREVK 161 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g-------~a~DL~~~~-~------~~~~~v~ 161 (442)
+.||+|||+ |.+|..++..++..|. ++.++ |++.+.++. ...++.+.. . ....+++
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g~-----~V~~~----d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~ 72 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAGY-----DVVMV----DISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT 72 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCCC-----ceEEE----eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 468999995 9999999999999885 36664 333344321 101111100 0 0012455
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 162 i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
.++ +++++++||+||++.- .+..+.+++...+.+++++++++ +||-..
T Consensus 73 ~~~-~~~~~~~aDlVi~av~--------------e~~~~k~~~~~~l~~~~~~~~il--~s~ts~ 120 (282)
T PRK05808 73 GTT-DLDDLKDADLVIEAAT--------------ENMDLKKKIFAQLDEIAKPEAIL--ATNTSS 120 (282)
T ss_pred EeC-CHHHhccCCeeeeccc--------------ccHHHHHHHHHHHHhhCCCCcEE--EECCCC
Confidence 544 5678999999999832 23455567777778877667776 555544
No 51
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.01 E-value=1.9e-05 Score=71.48 Aligned_cols=99 Identities=23% Similarity=0.258 Sum_probs=62.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC-C---CcccEEEecCcccccCCC
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-P---LLREVKIGINPYELFEDA 173 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~-~---~~~~v~i~~~~~eal~dA 173 (442)
||+|+|| |+.|.++|..|...+. ++.|+ .++.+.++.+-.+-....+ + +..++.+++|..+++++|
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~-----~V~l~----~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH-----EVTLW----GRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE-----EEEEE----TSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-----EEEEE----eccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcc
Confidence 8999996 9999999999999883 36664 3333444433222111110 1 124678888888999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
|+||++.- .+.++++.++|..+..++..+++++
T Consensus 71 d~IiiavP----------------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 71 DIIIIAVP----------------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp SEEEE-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred cEEEeccc----------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 99998732 2446777777777754455665544
No 52
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.01 E-value=4.9e-05 Score=72.55 Aligned_cols=103 Identities=21% Similarity=0.124 Sum_probs=65.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC--CCcccEEEecCcccccCCCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~--~~~~~v~i~~~~~eal~dAD 174 (442)
|||+|||++|++|.+++..|+..+. ++.+. +++.++++..+.++.+... ....++.. ++..++++++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~-----~V~v~----~r~~~~~~~l~~~~~~~~~~~g~~~~~~~-~~~~ea~~~aD 70 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN-----KIIIG----SRDLEKAEEAAAKALEELGHGGSDIKVTG-ADNAEAAKRAD 70 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-----EEEEE----EcCHHHHHHHHHHHHhhccccCCCceEEE-eChHHHHhcCC
Confidence 5899998569999999999998772 35553 5556666666555433210 11111222 35678899999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+||++.. .+.+.++.+.+.... .+.+||-++||.+
T Consensus 71 vVilavp----------------~~~~~~~l~~l~~~l-~~~vvI~~~ngi~ 105 (219)
T TIGR01915 71 VVILAVP----------------WDHVLKTLESLRDEL-SGKLVISPVVPLA 105 (219)
T ss_pred EEEEECC----------------HHHHHHHHHHHHHhc-cCCEEEEeccCce
Confidence 9999844 123344444454432 3468889999975
No 53
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.95 E-value=5.3e-05 Score=75.36 Aligned_cols=103 Identities=14% Similarity=0.174 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhc-----------ccC------CCcc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED-----------SLF------PLLR 158 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~-----------~~~------~~~~ 158 (442)
..||+|||| |.+|..++..|+..|. +|.++ |++.+.++.....+.. ... ....
T Consensus 3 i~~I~ViGa-G~mG~~iA~~la~~G~-----~V~l~----d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~ 72 (291)
T PRK06035 3 IKVIGVVGS-GVMGQGIAQVFARTGY-----DVTIV----DVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMA 72 (291)
T ss_pred CcEEEEECc-cHHHHHHHHHHHhcCC-----eEEEE----eCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHh
Confidence 468999995 9999999999999885 36664 3344444321111110 000 0011
Q ss_pred cEEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 159 ~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++..++ +++++++||+||.+.. .+.++.+++.+.+.+++.++++++..|.
T Consensus 73 ~i~~~~-~~~~~~~aDlVieav~--------------e~~~~k~~~~~~l~~~~~~~~il~S~ts 122 (291)
T PRK06035 73 RIRTST-SYESLSDADFIVEAVP--------------EKLDLKRKVFAELERNVSPETIIASNTS 122 (291)
T ss_pred CcEeeC-CHHHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEEEEcCC
Confidence 234443 4478999999999843 1245566667777877767777654444
No 54
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.95 E-value=4.9e-05 Score=76.18 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=61.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhccc---C------CCcccEEEec
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL---F------PLLREVKIGI 164 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~---~------~~~~~v~i~~ 164 (442)
+++.||+|||+ |.+|..++..|+..|. ++.++ |++.+.++.....+.+.. . ....+++.++
T Consensus 2 ~~~~~I~vIGa-G~mG~~iA~~l~~~g~-----~V~~~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 71 (311)
T PRK06130 2 NPIQNLAIIGA-GTMGSGIAALFARKGL-----QVVLI----DVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEA 71 (311)
T ss_pred CCccEEEEECC-CHHHHHHHHHHHhCCC-----eEEEE----ECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeC
Confidence 34579999995 9999999999998774 25554 334444443322111100 0 0112345555
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 165 ~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+..+++++||+||++.-. ..++..++...+..++.++++|+..++
T Consensus 72 ~~~~~~~~aDlVi~av~~--------------~~~~~~~v~~~l~~~~~~~~ii~s~ts 116 (311)
T PRK06130 72 GLAAAVSGADLVIEAVPE--------------KLELKRDVFARLDGLCDPDTIFATNTS 116 (311)
T ss_pred CHHHHhccCCEEEEeccC--------------cHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 555679999999998321 123444555556665545665544443
No 55
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.95 E-value=4.1e-05 Score=85.44 Aligned_cols=105 Identities=18% Similarity=0.221 Sum_probs=71.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHH---HHH----HHh-cccC------CCcccEE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAM----ELE-DSLF------PLLREVK 161 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g---~a~----DL~-~~~~------~~~~~v~ 161 (442)
..||+|||| |.+|..++..++..|+ ++.|++.+ .+.++. ... .+. .... ....+++
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~~G~-----~V~l~d~~----~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 382 (715)
T PRK11730 313 VKQAAVLGA-GIMGGGIAYQSASKGV-----PVIMKDIN----QKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIR 382 (715)
T ss_pred cceEEEECC-chhHHHHHHHHHhCCC-----eEEEEeCC----HHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE
Confidence 468999996 9999999999999886 47775443 333221 111 111 0000 0113455
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH
Q 013466 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (442)
Q Consensus 162 i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~ 227 (442)
.+ .++++++|||+||-+ .-++.++-+++-..+.++++|++++ .||....
T Consensus 383 ~~-~~~~~~~~aDlViEa--------------v~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl 431 (715)
T PRK11730 383 PT-LDYAGFERVDVVVEA--------------VVENPKVKAAVLAEVEQKVREDTIL--ASNTSTI 431 (715)
T ss_pred Ee-CCHHHhcCCCEEEec--------------ccCcHHHHHHHHHHHHhhCCCCcEE--EEcCCCC
Confidence 55 467899999999987 2346788889999999998778777 8887653
No 56
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.95 E-value=2e-05 Score=64.78 Aligned_cols=95 Identities=22% Similarity=0.250 Sum_probs=63.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-CcccccCCCcEE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEWA 176 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~~~eal~dADiV 176 (442)
||+|||+ |++|.+++..|+..+. .. .+|.+. .+++.+++...+.++. +.... +..+++++||+|
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~-~~-~~v~~~---~~r~~~~~~~~~~~~~---------~~~~~~~~~~~~~~advv 65 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGI-KP-HEVIIV---SSRSPEKAAELAKEYG---------VQATADDNEEAAQEADVV 65 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS--G-GEEEEE---EESSHHHHHHHHHHCT---------TEEESEEHHHHHHHTSEE
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC-Cc-eeEEee---ccCcHHHHHHHHHhhc---------cccccCChHHhhccCCEE
Confidence 8999995 9999999999999986 22 234432 2667777765554432 22323 578899999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
|++.-. +.+.++.+.+... .++..+|-++||
T Consensus 66 ilav~p----------------~~~~~v~~~i~~~-~~~~~vis~~ag 96 (96)
T PF03807_consen 66 ILAVKP----------------QQLPEVLSEIPHL-LKGKLVISIAAG 96 (96)
T ss_dssp EE-S-G----------------GGHHHHHHHHHHH-HTTSEEEEESTT
T ss_pred EEEECH----------------HHHHHHHHHHhhc-cCCCEEEEeCCC
Confidence 998431 3355566666333 378888888876
No 57
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.94 E-value=5.2e-05 Score=84.50 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=71.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHH---HHHHHHhccc------C-----CCcccE
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMELEDSL------F-----PLLREV 160 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~---g~a~DL~~~~------~-----~~~~~v 160 (442)
...||+|||| |.+|..++..++..|+ ++.|++.+ .+.++ ..+.++.+.. . ....++
T Consensus 312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~-----~V~l~d~~----~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 381 (714)
T TIGR02437 312 DVKQAAVLGA-GIMGGGIAYQSASKGT-----PIVMKDIN----QHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGI 381 (714)
T ss_pred ccceEEEECC-chHHHHHHHHHHhCCC-----eEEEEeCC----HHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCe
Confidence 3468999996 9999999999999886 47775443 33222 1111111000 0 011245
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 161 ~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+.++ ++++++|||+||-+. -++.++-+++-..+.++|+|++++ .||...
T Consensus 382 ~~~~-~~~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~ 430 (714)
T TIGR02437 382 TPTL-SYAGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTST 430 (714)
T ss_pred EEeC-CHHHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCC
Confidence 5554 578899999999883 346788889999999998788877 888765
No 58
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.93 E-value=0.00012 Score=69.07 Aligned_cols=96 Identities=24% Similarity=0.252 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
||+|+|+| +|++|++++..++..+. ++.+- ..+.++.+++.+..+.-. + ......++.+.||+
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~-----eV~ig---s~r~~~~~~a~a~~l~~~-------i-~~~~~~dA~~~aDV 63 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGH-----EVIIG---SSRGPKALAAAAAALGPL-------I-TGGSNEDAAALADV 63 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCC-----eEEEe---cCCChhHHHHHHHhhccc-------c-ccCChHHHHhcCCE
Confidence 67999999 59999999999999884 35542 234455666665555421 2 23457899999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
||++.- + +-+.++.+.+...- .+-+||-.|||.
T Consensus 64 VvLAVP------------~----~a~~~v~~~l~~~~-~~KIvID~tnp~ 96 (211)
T COG2085 64 VVLAVP------------F----EAIPDVLAELRDAL-GGKIVIDATNPI 96 (211)
T ss_pred EEEecc------------H----HHHHhHHHHHHHHh-CCeEEEecCCCc
Confidence 999844 1 33444455555432 367899999994
No 59
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.91 E-value=4.6e-05 Score=75.76 Aligned_cols=100 Identities=15% Similarity=0.179 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh--------cccCC------CcccE
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE--------DSLFP------LLREV 160 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~--------~~~~~------~~~~v 160 (442)
+..||+|||+ |.+|..++..|+..|. ++.++ |++.+.++.....+. ....+ ...++
T Consensus 3 ~~~kI~vIGa-G~mG~~iA~~la~~G~-----~V~l~----d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 72 (292)
T PRK07530 3 AIKKVGVIGA-GQMGNGIAHVCALAGY-----DVLLN----DVSADRLEAGLATINGNLARQVAKGKISEEARAAALARI 72 (292)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 3569999995 9999999999999875 36664 344444443221111 01000 00234
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEE
Q 013466 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219 (442)
Q Consensus 161 ~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vi 219 (442)
+.+ ++++++++||+||.+... +.++.+.+.+.|.+++.++++++
T Consensus 73 ~~~-~~~~~~~~aD~Vieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 73 STA-TDLEDLADCDLVIEAATE--------------DETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred Eee-CCHHHhcCCCEEEEcCcC--------------CHHHHHHHHHHHHhhCCCCcEEE
Confidence 554 456789999999998321 12344455556677666677664
No 60
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.90 E-value=5.7e-05 Score=84.45 Aligned_cols=143 Identities=17% Similarity=0.120 Sum_probs=88.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHH---HHHHHhccc------CC-----CcccEE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAMELEDSL------FP-----LLREVK 161 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g---~a~DL~~~~------~~-----~~~~v~ 161 (442)
..||+|||| |.+|..++..++..|+ ++.|++. +.+.++. ...+..+.. .+ ...+++
T Consensus 335 i~~v~ViGa-G~MG~gIA~~~a~~G~-----~V~l~d~----~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~ 404 (737)
T TIGR02441 335 VKTLAVLGA-GLMGAGIAQVSVDKGL-----KTVLKDA----TPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLT 404 (737)
T ss_pred ccEEEEECC-CHhHHHHHHHHHhCCC-----cEEEecC----CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 468999996 9999999999999886 4777543 3333221 111111110 00 113455
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc
Q 013466 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA 241 (442)
Q Consensus 162 i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~ 241 (442)
.+ .++++++|||+||-+ .-+|.++-+++-..+.++++|++++ .||....-...+.... ..|.
T Consensus 405 ~~-~~~~~~~~aDlViEA--------------v~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la~~~-~~p~ 466 (737)
T TIGR02441 405 PT-LDYSGFKNADMVIEA--------------VFEDLSLKHKVIKEVEAVVPPHCII--ASNTSALPIKDIAAVS-SRPE 466 (737)
T ss_pred Ee-CCHHHhccCCeehhh--------------ccccHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHHhhc-CCcc
Confidence 54 467899999999987 3346788889999999998788877 7887653322222222 2233
Q ss_pred ceee------------------ccchhhHHHHHHHHHHHhCCC
Q 013466 242 KNFH------------------ALTRLDENRAKCQLALKAGVF 266 (442)
Q Consensus 242 kvig------------------~gT~LDs~R~~~~lA~~lgv~ 266 (442)
|++| ..|.-++.-.-..+++.+|-.
T Consensus 467 r~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~ 509 (737)
T TIGR02441 467 KVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKV 509 (737)
T ss_pred ceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCe
Confidence 4433 345555544455567777743
No 61
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.90 E-value=5.6e-05 Score=84.30 Aligned_cols=107 Identities=11% Similarity=0.154 Sum_probs=71.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-HcCCCCCCCceEEEeccccchhhhHHHHHHHHhccc------C-----CCcccEEEe
Q 013466 96 MVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL------F-----PLLREVKIG 163 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~-~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~------~-----~~~~~v~i~ 163 (442)
..||+|||| |.+|..++..++ ..|+ ++.|++.+.+. .++......++.+.. . ....+++++
T Consensus 309 i~~v~ViGa-G~mG~giA~~~a~~~G~-----~V~l~d~~~~~-l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 381 (708)
T PRK11154 309 VNKVGVLGG-GLMGGGIAYVTATKAGL-----PVRIKDINPQG-INHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT 381 (708)
T ss_pred ccEEEEECC-chhhHHHHHHHHHHcCC-----eEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe
Confidence 468999996 999999999998 7675 47775443221 111111111111100 0 011356665
Q ss_pred cCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 164 ~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+ ++++++|||+||-+ .-+|.++-+++-..+.++++|++++ .||...
T Consensus 382 ~-~~~~~~~aDlViEa--------------v~E~~~~K~~v~~~le~~~~~~~il--asnTS~ 427 (708)
T PRK11154 382 T-DYRGFKHADVVIEA--------------VFEDLALKQQMVAEVEQNCAPHTIF--ASNTSS 427 (708)
T ss_pred C-ChHHhccCCEEeec--------------ccccHHHHHHHHHHHHhhCCCCcEE--EECCCC
Confidence 4 56899999999987 3346788999999999998888887 788765
No 62
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.89 E-value=8.5e-05 Score=82.69 Aligned_cols=104 Identities=13% Similarity=0.203 Sum_probs=69.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhhHHH---HH-HHHhccc-----CC-----CcccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEG---VA-MELEDSL-----FP-----LLREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~d~d~~~~~l~g---~a-~DL~~~~-----~~-----~~~~v 160 (442)
..||+|||| |.+|..++..++. .|+ ++.|++.+ .+.++. .+ ..|.... .+ ...++
T Consensus 304 i~~v~ViGa-G~mG~~iA~~~a~~~G~-----~V~l~d~~----~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 373 (699)
T TIGR02440 304 IKKVGILGG-GLMGGGIASVTATKAGI-----PVRIKDIN----PQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALI 373 (699)
T ss_pred ccEEEEECC-cHHHHHHHHHHHHHcCC-----eEEEEeCC----HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCe
Confidence 468999996 9999999999884 675 47775443 232221 11 1111110 00 11345
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 161 ~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+.++ ++++++|||+||-+. -++.++-+++-..|.++++|++++ .||...
T Consensus 374 ~~~~-~~~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~ 422 (699)
T TIGR02440 374 TGTT-DYRGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSS 422 (699)
T ss_pred EEeC-ChHHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCC
Confidence 5554 568999999999872 345788889999999998778776 788765
No 63
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=97.88 E-value=6.4e-05 Score=74.88 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=59.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHH-------HHHHhccc-C-C-----Cccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV-------AMELEDSL-F-P-----LLRE 159 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~-------a~DL~~~~-~-~-----~~~~ 159 (442)
.++.||+|||+ |.+|..++..|+..|. +|.++ |++.+.++.. ..++.... . . ....
T Consensus 2 ~~~~~V~vIG~-G~mG~~iA~~l~~~G~-----~V~~~----d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 71 (295)
T PLN02545 2 AEIKKVGVVGA-GQMGSGIAQLAAAAGM-----DVWLL----DSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGR 71 (295)
T ss_pred CCcCEEEEECC-CHHHHHHHHHHHhcCC-----eEEEE----eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 34578999995 9999999999999874 36564 3343433211 11121110 0 0 0012
Q ss_pred EEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEE
Q 013466 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219 (442)
Q Consensus 160 v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vi 219 (442)
... +++++++++||+||.+.- .+.++...+...+.+++.++++|+
T Consensus 72 ~~~-~~~~~~~~~aD~Vieav~--------------e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 72 IRC-TTNLEELRDADFIIEAIV--------------ESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred eEe-eCCHHHhCCCCEEEEcCc--------------cCHHHHHHHHHHHHhhCCCCcEEE
Confidence 333 345688999999999832 234555555555666665677653
No 64
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.80 E-value=0.00011 Score=72.88 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=58.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhc----cc----C------CCcccEEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----SL----F------PLLREVKI 162 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~----~~----~------~~~~~v~i 162 (442)
.||+|||+ |.+|..++..|+..|. ++.+++ ++.+.++.....+.. .. . ....+++.
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~-----~V~~~d----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 71 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF-----QTTLVD----IKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY 71 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC-----cEEEEe----CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 58999995 9999999999998874 366643 344444322211110 00 0 00123556
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEE
Q 013466 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218 (442)
Q Consensus 163 ~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~v 218 (442)
+.+..+++++||+||.+... +..+.+.+...+.+++.+++++
T Consensus 72 ~~~~~~~~~~aD~Vi~avpe--------------~~~~k~~~~~~l~~~~~~~~il 113 (288)
T PRK09260 72 SLDLKAAVADADLVIEAVPE--------------KLELKKAVFETADAHAPAECYI 113 (288)
T ss_pred eCcHHHhhcCCCEEEEeccC--------------CHHHHHHHHHHHHhhCCCCcEE
Confidence 66666899999999988431 2344444555566666566655
No 65
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=97.75 E-value=0.00011 Score=78.94 Aligned_cols=100 Identities=13% Similarity=0.054 Sum_probs=61.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHH---HHHHhcc-c-CC---------Cccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV---AMELEDS-L-FP---------LLRE 159 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~---a~DL~~~-~-~~---------~~~~ 159 (442)
.+..||+|||| |.+|..++..++..|+ ++.++ |++.+.++.. ..++.+. . .. ...+
T Consensus 5 ~~i~~V~VIGa-G~MG~gIA~~la~aG~-----~V~l~----D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~ 74 (507)
T PRK08268 5 PSIATVAVIGA-GAMGAGIAQVAAQAGH-----TVLLY----DARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALAR 74 (507)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC-----eEEEE----eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC
Confidence 34578999995 9999999999999885 36664 3344444321 1111100 0 00 1123
Q ss_pred EEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEE
Q 013466 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218 (442)
Q Consensus 160 v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~v 218 (442)
++.++ +++++++||+||.+.- ++.++-+.+-..+.+++.+++++
T Consensus 75 i~~~~-~~~~~~~aDlViEav~--------------E~~~vK~~vf~~l~~~~~~~ail 118 (507)
T PRK08268 75 LRPVE-ALADLADCDLVVEAIV--------------ERLDVKQALFAQLEAIVSPDCIL 118 (507)
T ss_pred eEEeC-CHHHhCCCCEEEEcCc--------------ccHHHHHHHHHHHHhhCCCCcEE
Confidence 55544 5678999999998732 23455555556678877677776
No 66
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=97.69 E-value=0.00012 Score=78.45 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHH----HHHhccc-CC---------CcccEE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA----MELEDSL-FP---------LLREVK 161 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a----~DL~~~~-~~---------~~~~v~ 161 (442)
..||+|||+ |.+|..++..++..|. ++.++ |++.+.++... ..+.... .. ...+++
T Consensus 5 ~~kV~VIGa-G~MG~gIA~~la~aG~-----~V~l~----d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~ 74 (503)
T TIGR02279 5 VVTVAVIGA-GAMGAGIAQVAASAGH-----QVLLY----DIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLI 74 (503)
T ss_pred ccEEEEECc-CHHHHHHHHHHHhCCC-----eEEEE----eCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccE
Confidence 468999995 9999999999999885 36664 44444443211 1111000 00 112355
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 162 i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
.++ +++++++||+||.+.- ++.++-+.+-..+.+++.+++++ .||...
T Consensus 75 ~~~-~~~~l~~aDlVIEav~--------------E~~~vK~~vf~~l~~~~~~~~Il--asnTSt 122 (503)
T TIGR02279 75 PVT-DLHALADAGLVIEAIV--------------ENLEVKKALFAQLEELCPADTII--ASNTSS 122 (503)
T ss_pred EeC-CHHHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EECCCC
Confidence 544 5688999999998732 23455666666688887666664 666554
No 67
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.64 E-value=4.7e-05 Score=72.26 Aligned_cols=111 Identities=19% Similarity=0.204 Sum_probs=76.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC------C---------Ccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF------P---------LLR 158 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~------~---------~~~ 158 (442)
.++..|+|||| |.+|+.+|+..+..|+ ++.|++.+.|.-....+++...+.+... + .+.
T Consensus 9 ~~~~~V~ivGa-G~MGSGIAQv~a~sg~-----~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ 82 (298)
T KOG2304|consen 9 AEIKNVAIVGA-GQMGSGIAQVAATSGL-----NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLD 82 (298)
T ss_pred ccccceEEEcc-cccchhHHHHHHhcCC-----ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHH
Confidence 44678999996 9999999999999987 4677543322222222333333322210 0 012
Q ss_pred cEEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 159 ~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
.+..+++-..++.|||+||-+ +-+|++|-+++-+.|.+.|.+++++ .||...
T Consensus 83 ri~~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~il--~tNTSS 134 (298)
T KOG2304|consen 83 RIKTSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSSTIL--ATNTSS 134 (298)
T ss_pred HHHHcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccceEE--eecccc
Confidence 445667778899999998866 6789999999999999998677776 788764
No 68
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.57 E-value=0.00031 Score=65.51 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=58.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC--------------cccEEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--------------LREVKI 162 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~--------------~~~v~i 162 (442)
|||+||| .|.||..+|..|+..|. .+.- + |.++++.+.+ .....++ ..+.+.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~-----~V~g--~--D~~~~~v~~l----~~g~~p~~E~~l~~ll~~~~~~~~l~~ 66 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGH-----QVIG--V--DIDEEKVEAL----NNGELPIYEPGLDELLKENVSAGRLRA 66 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS-----EEEE--E---S-HHHHHHH----HTTSSSS-CTTHHHHHHHHHHTTSEEE
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCC-----EEEE--E--eCChHHHHHH----hhccccccccchhhhhccccccccchh
Confidence 7999999 59999999999999985 2333 3 4444544433 2222121 135677
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 163 ~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+++..+++++||++|++.+.|.+++.+ .| ...+.+.++.|.++..++.+|++=|
T Consensus 67 t~~~~~ai~~adv~~I~VpTP~~~~~~-~D-----ls~v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 67 TTDIEEAIKDADVVFICVPTPSDEDGS-PD-----LSYVESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp ESEHHHHHHH-SEEEE----EBETTTS-BE-----THHHHHHHHHHHHHHCSCEEEEESS
T ss_pred hhhhhhhhhccceEEEecCCCccccCC-cc-----HHHHHHHHHHHHHHHhhcceEEEcc
Confidence 777778899999999999888755321 11 1234444444444444445544433
No 69
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.56 E-value=0.00046 Score=73.92 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=61.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH-------h---cccCCCcccEEEecC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL-------E---DSLFPLLREVKIGIN 165 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL-------~---~~~~~~~~~v~i~~~ 165 (442)
.+||+|||+ |.+|..++..|+..|. ++.++ |++.+.++.....+ . ........++++..+
T Consensus 4 i~kIavIG~-G~MG~~iA~~la~~G~-----~V~v~----D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~ 73 (495)
T PRK07531 4 IMKAACIGG-GVIGGGWAARFLLAGI-----DVAVF----DPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCAS 73 (495)
T ss_pred cCEEEEECc-CHHHHHHHHHHHhCCC-----eEEEE----eCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCC
Confidence 358999995 9999999999999885 36664 34444443321111 0 000000123556566
Q ss_pred cccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 166 ~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
..+++++||+|+.+.. .+.++.+++...+.+++.++++ +.+|...
T Consensus 74 ~~ea~~~aD~Vieavp--------------e~~~vk~~l~~~l~~~~~~~~i--I~SsTsg 118 (495)
T PRK07531 74 LAEAVAGADWIQESVP--------------ERLDLKRRVLAEIDAAARPDAL--IGSSTSG 118 (495)
T ss_pred HHHHhcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcE--EEEcCCC
Confidence 6678999999998732 1234444455556666645554 4555554
No 70
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.55 E-value=0.00059 Score=68.39 Aligned_cols=105 Identities=21% Similarity=0.252 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC----CCcccEEEecCcccccC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF----PLLREVKIGINPYELFE 171 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~----~~~~~v~i~~~~~eal~ 171 (442)
|+||+|||+ |.+|..++..|+..+. ++.++ +++.+.++....+..+... .....+....+..+.++
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~-----~V~~~----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH-----DVTLW----ARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----EEEEE----ECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 579999995 9999999999998764 25553 4444555544332111110 00113444455556888
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
++|+||++... +.+.++.+.+..+..++.+++.++|-++
T Consensus 71 ~~D~vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 71 DADLILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CCCEEEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 99999998441 1234444455554456778888887654
No 71
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.53 E-value=0.00057 Score=69.70 Aligned_cols=108 Identities=14% Similarity=0.039 Sum_probs=69.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC-C----CcccEEEecCcc
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-P----LLREVKIGINPY 167 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~-~----~~~~v~i~~~~~ 167 (442)
.++++||+|||| |.+|..++..|...+. +.++. ++++..+.+..+-....+ + +..++..+++..
T Consensus 4 ~~~~mkI~IiGa-Ga~G~alA~~La~~g~------v~l~~----~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~ 72 (341)
T PRK12439 4 AKREPKVVVLGG-GSWGTTVASICARRGP------TLQWV----RSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFA 72 (341)
T ss_pred ccCCCeEEEECC-CHHHHHHHHHHHHCCC------EEEEe----CCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHH
Confidence 356789999995 9999999999998762 44532 233433333221100110 1 112456666667
Q ss_pred cccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH
Q 013466 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~ 227 (442)
++++++|+||++.- .+.++++.+.+..+.+++..++.++|-.+.
T Consensus 73 ~a~~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 73 EAANCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred HHHhcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 78999999999833 244666666666655567788899987653
No 72
>PRK07680 late competence protein ComER; Validated
Probab=97.49 E-value=0.00088 Score=66.00 Aligned_cols=100 Identities=11% Similarity=0.188 Sum_probs=63.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|||+ |.+|..++..|...+.+.. ..+.+ .+++.++++....++ + .+....+..+.++++|+|
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~-~~v~v----~~r~~~~~~~~~~~~-----~---g~~~~~~~~~~~~~aDiV 66 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKP-SQLTI----TNRTPAKAYHIKERY-----P---GIHVAKTIEEVISQSDLI 66 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCc-ceEEE----ECCCHHHHHHHHHHc-----C---CeEEECCHHHHHHhCCEE
Confidence 48999995 9999999999998875422 23444 255555554332211 1 244555566778999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
|++.- .+.+.++.+.+..+..++.+|+.++|.+.
T Consensus 67 ilav~----------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 67 FICVK----------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred EEecC----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 99842 12244444555544345678899999764
No 73
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.39 E-value=0.00072 Score=61.48 Aligned_cols=92 Identities=18% Similarity=0.196 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||+||| .|.+|+.++..|+..+. ++..+ |++.++++.... . ......+..+.+++||+
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~-----~v~~~----d~~~~~~~~~~~----~------g~~~~~s~~e~~~~~dv 60 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGY-----EVTVY----DRSPEKAEALAE----A------GAEVADSPAEAAEQADV 60 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT-----EEEEE----ESSHHHHHHHHH----T------TEEEESSHHHHHHHBSE
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCC-----eEEee----ccchhhhhhhHH----h------hhhhhhhhhhHhhcccc
Confidence 68999999 59999999999999885 35443 455555553322 1 14555667889999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHH--HHhhhCCCeEEEEeC
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKA--LNAVASRNVKVIVVG 222 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~--I~~~a~p~a~vivvt 222 (442)
||++.. +.+.++++... +.....++.++|..+
T Consensus 61 vi~~v~---------------~~~~v~~v~~~~~i~~~l~~g~iiid~s 94 (163)
T PF03446_consen 61 VILCVP---------------DDDAVEAVLFGENILAGLRPGKIIIDMS 94 (163)
T ss_dssp EEE-SS---------------SHHHHHHHHHCTTHGGGS-TTEEEEE-S
T ss_pred eEeecc---------------cchhhhhhhhhhHHhhccccceEEEecC
Confidence 998733 23445555554 444333455555544
No 74
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.37 E-value=0.0013 Score=66.50 Aligned_cols=104 Identities=14% Similarity=0.267 Sum_probs=65.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC----CCcccEEEecCccccc-C
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF----PLLREVKIGINPYELF-E 171 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~----~~~~~v~i~~~~~eal-~ 171 (442)
|||+|||| |.+|..++..|...+. +|.|+ +++.+.++.+..+-.+..+ .+..++..+++..+++ .
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~-----~V~l~----~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 70 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI-----SVNLW----GRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD 70 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-----eEEEE----ecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC
Confidence 58999996 9999999999998873 36663 4444444444332111110 1112456666666666 5
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHh-hhCCCeEEEEeCCchh
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA-VASRNVKVIVVGNPCN 226 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~-~a~p~a~vivvtNPvd 226 (442)
++|+||++.- ..-+.++.+.+.. +..++..++.++|=.+
T Consensus 71 ~~Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 71 NATCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred CCCEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 8999999843 2345555555554 4346777888888763
No 75
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.36 E-value=0.0015 Score=66.69 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=65.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCC---CceEEEeccccc-hhhhHHHHHHHHhcccC----CCcccEEEecCcccc
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPD---QPIALKLLGSER-SLQALEGVAMELEDSLF----PLLREVKIGINPYEL 169 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~---~~I~L~l~d~d~-~~~~l~g~a~DL~~~~~----~~~~~v~i~~~~~ea 169 (442)
||+|||| |+.|.++|..|...+...++ .+|.|+..+.++ +++..+.+-.+.+...+ .+..+++.+++..++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 6999995 99999999999987732221 357776543221 12222222222111111 112457777777889
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+++||+||++.- .+.++++++.+..+-.++..++.++
T Consensus 80 l~~ADiIIlAVP----------------s~~i~~vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 80 AKGADILVFVIP----------------HQFLEGICKQLKGHVKPNARAISCI 116 (342)
T ss_pred HhcCCEEEEECC----------------hHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 999999998732 3566777777776543455565555
No 76
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.27 E-value=0.0015 Score=65.84 Aligned_cols=114 Identities=17% Similarity=0.124 Sum_probs=76.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC------cccEEEecCcccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL------LREVKIGINPYEL 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~------~~~v~i~~~~~ea 169 (442)
++||+|+|| |.=|.+++..|+..+. ++.|...+ ++....+-.+ |....+ ..++..++|..++
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~-----~V~lw~r~----~~~~~~i~~~--~~N~~yLp~i~lp~~l~at~Dl~~a 68 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGH-----EVRLWGRD----EEIVAEINET--RENPKYLPGILLPPNLKATTDLAEA 68 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCC-----eeEEEecC----HHHHHHHHhc--CcCccccCCccCCcccccccCHHHH
Confidence 479999995 9999999999999883 47776443 2222222221 122112 2356778888999
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC-----CchhHHHHHHHHHCC
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-----NPCNTNALICLKNAP 237 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt-----NPvd~lt~~~~k~s~ 237 (442)
+++||+||++.- .+.+++++++++.+..++.+++.++ +....+..++.+..+
T Consensus 69 ~~~ad~iv~avP----------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~ 125 (329)
T COG0240 69 LDGADIIVIAVP----------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELP 125 (329)
T ss_pred HhcCCEEEEECC----------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcC
Confidence 999999999733 3667777777765545677887776 344566677666553
No 77
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.26 E-value=0.0024 Score=64.08 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=46.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHH-------HHHhcccC-------CCcccEE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA-------MELEDSLF-------PLLREVK 161 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a-------~DL~~~~~-------~~~~~v~ 161 (442)
++||+|||+ |.+|..++..|+..|. +|.++ |++.+.++... ..+.+... ....+++
T Consensus 2 ~~~V~VIG~-G~mG~~iA~~la~~G~-----~V~v~----d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~ 71 (308)
T PRK06129 2 MGSVAIIGA-GLIGRAWAIVFARAGH-----EVRLW----DADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIR 71 (308)
T ss_pred CcEEEEECc-cHHHHHHHHHHHHCCC-----eeEEE----eCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeE
Confidence 458999995 9999999999999875 36664 33433333211 01111100 0112356
Q ss_pred EecCcccccCCCcEEEEeC
Q 013466 162 IGINPYELFEDAEWALLIG 180 (442)
Q Consensus 162 i~~~~~eal~dADiVIi~a 180 (442)
.+.+..+++++||+|+.+.
T Consensus 72 ~~~~~~~a~~~ad~Vi~av 90 (308)
T PRK06129 72 VTDSLADAVADADYVQESA 90 (308)
T ss_pred EECcHHHhhCCCCEEEECC
Confidence 6666567899999999874
No 78
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases. It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.
Probab=97.25 E-value=0.0018 Score=62.37 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHH
Q 013466 337 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKT 408 (442)
Q Consensus 337 ~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~s 408 (442)
.|..++++|. +|++.++.++|.++|.+-++|+|.++.+||+|+++|+.++. ...|.+..+..++..
T Consensus 138 ~a~~~i~~i~-----~~~~~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~-~g~lP~~~~~li~~~ 203 (232)
T PF11975_consen 138 YAEAAIEAIY-----NDKPKRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVA-VGPLPPAIAGLIQQV 203 (232)
T ss_dssp HHHHHHHHHH-----HSSEEEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB--SB---HHHHHHHHHH
T ss_pred hHHHHHHHHh-----cCCCeEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEecc-CCCCCHHHHHHHHHH
Confidence 3455556564 47888999999999988999999999999999999999866 689998888866543
No 79
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.24 E-value=0.0062 Score=65.98 Aligned_cols=119 Identities=14% Similarity=0.073 Sum_probs=68.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhccc-----CCCcccEEEe---cC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-----FPLLREVKIG---IN 165 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~-----~~~~~~v~i~---~~ 165 (442)
++...|.|+||+|+||..++..|+..|. .|.+. .++.+++.....++.+.. .....++.+. ..
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-----~Vval----~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF-----RVRAG----VRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 3446899999999999999999998774 24442 445555554443332210 0000112211 11
Q ss_pred c----ccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 166 P----YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 166 ~----~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+ .+++.++|+||.++|.......+-...+..|..-...+++.+.+. + -+.||+++-
T Consensus 149 D~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~a-g-VgRIV~VSS 208 (576)
T PLN03209 149 KPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVA-K-VNHFILVTS 208 (576)
T ss_pred CHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHh-C-CCEEEEEcc
Confidence 1 345789999999888654322222233555666677777777664 2 345666653
No 80
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.24 E-value=0.003 Score=65.11 Aligned_cols=107 Identities=10% Similarity=0.089 Sum_probs=67.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC----CCCCCceEEEeccccchhhhHHHHHHHHhc--ccC------CCcccEE
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV----LGPDQPIALKLLGSERSLQALEGVAMELED--SLF------PLLREVK 161 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l----~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~--~~~------~~~~~v~ 161 (442)
.+.+||+|||| |.-|.++|..|...+. |+. ++.|+..+.+.+.. .++.++++ ... .+..++.
T Consensus 9 ~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~--~V~lw~~~~~~~~~---~~~~~in~~~~N~~ylp~~~Lp~ni~ 82 (365)
T PTZ00345 9 CGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHN--EVRMWVLEEIVEGE---KLSDIINTKHENVKYLPGIKLPDNIV 82 (365)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCC--eEEEEEecccccch---HHHHHHHhcCCCcccCCCCcCCCceE
Confidence 34579999995 9999999999998763 332 47776554322111 22333332 111 1234677
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHh--hhCCCeEEEEeC
Q 013466 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA--VASRNVKVIVVG 222 (442)
Q Consensus 162 i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~--~a~p~a~vivvt 222 (442)
.+++..+++++||+||++.- .+.++++++.++. +..++.++|.++
T Consensus 83 ~tsdl~eav~~aDiIvlAVP----------------sq~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 83 AVSDLKEAVEDADLLIFVIP----------------HQFLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred EecCHHHHHhcCCEEEEEcC----------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence 88887889999999998733 3567777777776 332344555444
No 81
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.22 E-value=0.0029 Score=62.57 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=46.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||+|||+ |++|.+++..|+..+.+.. ..|.. .|++.++++....++ . +.+..+..+.+++||+|
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~-~~I~v----~~r~~~~~~~l~~~~-----g----~~~~~~~~e~~~~aDiI 67 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSP-DQIIC----SDLNVSNLKNASDKY-----G----ITITTNNNEVANSADIL 67 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCC-ceEEE----ECCCHHHHHHHHHhc-----C----cEEeCCcHHHHhhCCEE
Confidence 58999995 9999999999999886432 23444 355555554322111 1 33445566778999999
Q ss_pred EEeCC
Q 013466 177 LLIGA 181 (442)
Q Consensus 177 Ii~ag 181 (442)
|++..
T Consensus 68 iLavk 72 (272)
T PRK12491 68 ILSIK 72 (272)
T ss_pred EEEeC
Confidence 98743
No 82
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.22 E-value=0.0028 Score=65.16 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=62.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC--------------cccEEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--------------LREVKI 162 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~--------------~~~v~i 162 (442)
|||+||| +|=||...+-.|++.|. ++.. +|+| +.+.+. |.+...|. ..+.+.
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GH-----eVv~--vDid--~~KV~~----ln~g~~PI~EpgLe~ll~~~~~~gRl~f 66 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGH-----EVVC--VDID--ESKVEL----LNKGISPIYEPGLEELLKENLASGRLRF 66 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCC-----eEEE--EeCC--HHHHHH----HhCCCCCCcCccHHHHHHhccccCcEEE
Confidence 6999999 69999999999999773 2444 3333 344332 22222121 124778
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhh
Q 013466 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA 212 (442)
Q Consensus 163 ~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a 212 (442)
+++-.++++++|+++|+.|.|.++.. -.| ...+...++.|.++.
T Consensus 67 Ttd~~~a~~~adv~fIavgTP~~~dg-~aD-----l~~V~ava~~i~~~~ 110 (414)
T COG1004 67 TTDYEEAVKDADVVFIAVGTPPDEDG-SAD-----LSYVEAVAKDIGEIL 110 (414)
T ss_pred EcCHHHHHhcCCEEEEEcCCCCCCCC-Ccc-----HHHHHHHHHHHHhhc
Confidence 88878899999999999998877622 222 345556666666553
No 83
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.13 E-value=0.0014 Score=57.46 Aligned_cols=102 Identities=21% Similarity=0.213 Sum_probs=54.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
.+||+|||| |+||.+|+..|...+. +|.- + ..++.+..+..+..+. ...+ .+..+.+++||+
T Consensus 10 ~l~I~iIGa-GrVG~~La~aL~~ag~-----~v~~--v-~srs~~sa~~a~~~~~--------~~~~-~~~~~~~~~aDl 71 (127)
T PF10727_consen 10 RLKIGIIGA-GRVGTALARALARAGH-----EVVG--V-YSRSPASAERAAAFIG--------AGAI-LDLEEILRDADL 71 (127)
T ss_dssp --EEEEECT-SCCCCHHHHHHHHTTS-----EEEE--E-SSCHH-HHHHHHC--T--------T------TTGGGCC-SE
T ss_pred ccEEEEECC-CHHHHHHHHHHHHCCC-----eEEE--E-EeCCcccccccccccc--------cccc-cccccccccCCE
Confidence 579999996 9999999999999884 2322 1 2444433332221111 2222 345788999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhh-CCCeEEEEeCC---chhHHHHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA-SRNVKVIVVGN---PCNTNALI 231 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a-~p~a~vivvtN---Pvd~lt~~ 231 (442)
+|++... ..+.+++++|..+. ...+.+++-+- +.+++..+
T Consensus 72 v~iavpD----------------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~ 115 (127)
T PF10727_consen 72 VFIAVPD----------------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA 115 (127)
T ss_dssp EEE-S-C----------------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred EEEEech----------------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence 9998431 34777777777641 02345555553 34666554
No 84
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.10 E-value=0.0022 Score=63.80 Aligned_cols=106 Identities=15% Similarity=0.084 Sum_probs=60.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHH-HhcccCCC-cc--cEEEecCcccccCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFPL-LR--EVKIGINPYELFED 172 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~D-L~~~~~~~-~~--~v~i~~~~~eal~d 172 (442)
|||+|+|+ |.+|..++..|...+. .+.++ ++ .++++..... +. ..... .. .....++..+..++
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~-----~V~~~----~r-~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR-----DVTFL----VR-PKRAKALRERGLV-IRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC-----ceEEE----ec-HHHHHHHHhCCeE-EEeCCCeEEecceeecCHHHccCC
Confidence 58999995 9999999999998763 36663 33 3344432210 00 00000 00 11122333344589
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHH
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~ 230 (442)
+|+||++...+ -+.++.+.+..+..++..|+.+.|.++....
T Consensus 69 ~d~vilavk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~ 110 (305)
T PRK12921 69 FDLVILAVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQ 110 (305)
T ss_pred CCEEEEEeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHH
Confidence 99999984421 1333444444443467788889998865443
No 85
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.09 E-value=0.0047 Score=61.07 Aligned_cols=100 Identities=26% Similarity=0.247 Sum_probs=59.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh-hhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~-~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
.|||+|||+ |++|.+++..|+..+.... ..+.+ + +++. ++++..+.++ .+.+..+..+.+++||
T Consensus 3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~-~~v~v--~--~r~~~~~~~~l~~~~---------g~~~~~~~~e~~~~aD 67 (279)
T PRK07679 3 IQNISFLGA-GSIAEAIIGGLLHANVVKG-EQITV--S--NRSNETRLQELHQKY---------GVKGTHNKKELLTDAN 67 (279)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCc-ceEEE--E--CCCCHHHHHHHHHhc---------CceEeCCHHHHHhcCC
Confidence 369999995 9999999999998874332 12433 2 4432 3344332211 1344455567789999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+||++.. | +.+.++...+..+..++.+||.+.+-+.
T Consensus 68 vVilav~----p------------~~~~~vl~~l~~~~~~~~liIs~~aGi~ 103 (279)
T PRK07679 68 ILFLAMK----P------------KDVAEALIPFKEYIHNNQLIISLLAGVS 103 (279)
T ss_pred EEEEEeC----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 9999733 1 2233333444443335667777655543
No 86
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.08 E-value=0.0037 Score=65.29 Aligned_cols=110 Identities=12% Similarity=0.095 Sum_probs=61.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC----------cccEEEecCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL----------LREVKIGINP 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~----------~~~v~i~~~~ 166 (442)
|||+||| +|.+|..++..|+..|. ++..+ |++.++++.+.........+. ..+++.+++.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~-----~V~~~----d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~ 70 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGH-----EVTGV----DIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDY 70 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCC-----eEEEE----ECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCH
Confidence 4899999 59999999999998774 25453 444455443321100000000 1125555555
Q ss_pred ccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.+++++||+||++.+.|..... .. +...+.+....+.++..++.++++.|
T Consensus 71 ~~~~~~advvii~vpt~~~~~~-~~-----d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 71 EDAIRDADVIIICVPTPLKEDG-SP-----DLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred HHHHhhCCEEEEEeCCCCCCCC-Cc-----ChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 6789999999999776654311 11 12334444444444433455555444
No 87
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.07 E-value=0.0063 Score=64.25 Aligned_cols=93 Identities=15% Similarity=0.168 Sum_probs=57.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+||||.|.+|..++..|...|. .+.++ +++.+.+...+.++ .+....+..+++.+||+|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~-----~V~v~----~r~~~~~~~~a~~~---------gv~~~~~~~e~~~~aDvV 62 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF-----EVIVT----GRDPKKGKEVAKEL---------GVEYANDNIDAAKDADIV 62 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC-----EEEEE----ECChHHHHHHHHHc---------CCeeccCHHHHhccCCEE
Confidence 5899998679999999999998774 25443 44444433333322 123334556789999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
|++... ..+.++.+.+..+..++++++.+++
T Consensus 63 Ilavp~----------------~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 63 IISVPI----------------NVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred EEecCH----------------HHHHHHHHHHHhhCCCCCEEEEccc
Confidence 998441 1222333333333346677777775
No 88
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.07 E-value=0.0033 Score=62.29 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=60.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC-cccEE---EecCcccccCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVK---IGINPYELFED 172 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~-~~~v~---i~~~~~eal~d 172 (442)
|||+|||| |.+|..++..|...|. ++.+. +++.+.++....+ .. .. ..... ....+.+.+++
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~-----~V~~~----~r~~~~~~~~~~~---g~-~~~~~~~~~~~~~~~~~~~~~~ 66 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH-----DVTLV----ARRGAHLDALNEN---GL-RLEDGEITVPVLAADDPAELGP 66 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----eEEEE----ECChHHHHHHHHc---CC-cccCCceeecccCCCChhHcCC
Confidence 58999995 9999999999998763 36664 3333333322211 10 00 01111 11233444599
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHH
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~ 230 (442)
+|+||++.... -+.++.+.+..+.+++..|+...|..+..-.
T Consensus 67 ~d~vila~k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~ 108 (304)
T PRK06522 67 QDLVILAVKAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLEE 108 (304)
T ss_pred CCEEEEecccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHHH
Confidence 99999984421 1233444444443467788899998765443
No 89
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.06 E-value=0.0059 Score=58.79 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=44.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+.+||+|||+ |++|.+++..|+..+.... +.+.+ ++ +.+.++++..+..+ .+..+.+..+.++++|
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~-~~i~~--~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~D 68 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYI-EEIIV--SN-RSNVEKLDQLQARY---------NVSTTTDWKQHVTSVD 68 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCc-CeEEE--EC-CCCHHHHHHHHHHc---------CcEEeCChHHHHhcCC
Confidence 4579999995 9999999999988763221 11322 21 22334444332211 1334455667789999
Q ss_pred EEEEeC
Q 013466 175 WALLIG 180 (442)
Q Consensus 175 iVIi~a 180 (442)
+||++.
T Consensus 69 iViiav 74 (245)
T PRK07634 69 TIVLAM 74 (245)
T ss_pred EEEEec
Confidence 999873
No 90
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.05 E-value=0.0044 Score=62.67 Aligned_cols=75 Identities=27% Similarity=0.290 Sum_probs=48.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhccc----CCCcccEEEecCcccccC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYELFE 171 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~----~~~~~~v~i~~~~~eal~ 171 (442)
+|||+|||+ |.+|..++..|+..|. ++.++ +++.++++.......... ..+..++..+.+..++++
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~-----~V~~~----~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGV-----PVRLW----ARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALA 73 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc
Confidence 679999995 9999999999998774 35553 444455444432211100 011122555556667889
Q ss_pred CCcEEEEeC
Q 013466 172 DAEWALLIG 180 (442)
Q Consensus 172 dADiVIi~a 180 (442)
++|+||++.
T Consensus 74 ~aD~Vi~~v 82 (328)
T PRK14618 74 GADFAVVAV 82 (328)
T ss_pred CCCEEEEEC
Confidence 999999873
No 91
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.02 E-value=0.0057 Score=60.57 Aligned_cols=101 Identities=22% Similarity=0.273 Sum_probs=57.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||+|||+ |.+|.+++..|...+.+.. ..+.++ +.+ ..++++.. .... + .+.++.+..+.++++|+
T Consensus 1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~-~~V~~~--~r~-~~~~~~~l----~~~~-~---~~~~~~~~~e~~~~aDv 67 (277)
T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVATP-EEIILY--SSS-KNEHFNQL----YDKY-P---TVELADNEAEIFTKCDH 67 (277)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCc-ccEEEE--eCC-cHHHHHHH----HHHc-C---CeEEeCCHHHHHhhCCE
Confidence 568999995 9999999999998874322 134442 211 12222222 1111 1 23444555677899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
||++.. .+.+.++.+.+..+..++..|+.+.|-+
T Consensus 68 Vilavp----------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 68 SFICVP----------------PLAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred EEEecC----------------HHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 998743 1234444444444322344566666644
No 92
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.02 E-value=0.0046 Score=60.39 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=59.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+||| .|++|..++..|+..+...+ ..|.+ + .+++.++++.. .+. .+.+..+..+.+++||+|
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~~-~~i~v--~-~~r~~~~~~~~----~~~------g~~~~~~~~e~~~~aDvV 65 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVPP-SRIST--A-DDSNPARRDVF----QSL------GVKTAASNTEVVKSSDVI 65 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCCc-ceEEE--E-eCCCHHHHHHH----HHc------CCEEeCChHHHHhcCCEE
Confidence 6899999 59999999999998875332 12333 2 14454554322 111 134445566778999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
|++.. | +.+.++...+.....++.++|..++..
T Consensus 66 il~v~-~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 66 ILAVK-P---------------QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred EEEEC-c---------------HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 99842 2 224444444444334566666665554
No 93
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.00 E-value=0.0036 Score=63.38 Aligned_cols=105 Identities=20% Similarity=0.108 Sum_probs=59.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC-C------cccEEEecCccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-L------LREVKIGINPYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~-~------~~~v~i~~~~~e 168 (442)
|+||+|||+ |.||..++..|...|. ++.++ +++. ..+....+-...... . ..++... .+.+
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~-----~V~~~----~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 69 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA-----DVTLI----GRAR-IGDELRAHGLTLTDYRGRDVRVPPSAIAFS-TDPA 69 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC-----cEEEE----ecHH-HHHHHHhcCceeecCCCcceecccceeEec-cChh
Confidence 469999995 9999999999999874 36663 3322 112111100000000 0 0112233 3457
Q ss_pred ccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHH
Q 013466 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l 228 (442)
+++++|+||++...+. ..++.+.+..+..++.+|+..+|..+..
T Consensus 70 ~~~~~D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 70 ALATADLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred hccCCCEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 8899999999854221 1223344444445677888889987644
No 94
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.99 E-value=0.0049 Score=60.28 Aligned_cols=96 Identities=22% Similarity=0.236 Sum_probs=59.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||+|||+ |.+|..++..|...+.. . ..+.+ .+++.+.++.....+ .+.+..+..+.+.++|+
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~-~-~~v~v----~~r~~~~~~~~~~~~---------g~~~~~~~~~~~~~adv 65 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVP-A-KDIIV----SDPSPEKRAALAEEY---------GVRAATDNQEAAQEADV 65 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCC-c-ceEEE----EcCCHHHHHHHHHhc---------CCeecCChHHHHhcCCE
Confidence 579999995 99999999999987741 1 12444 255555544332211 12333445567889999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
||++.. ...+.++.+.+..+. +..|+.++|-.
T Consensus 66 Vil~v~----------------~~~~~~v~~~l~~~~--~~~vvs~~~gi 97 (267)
T PRK11880 66 VVLAVK----------------PQVMEEVLSELKGQL--DKLVVSIAAGV 97 (267)
T ss_pred EEEEcC----------------HHHHHHHHHHHHhhc--CCEEEEecCCC
Confidence 999843 233555555555542 45677777755
No 95
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.98 E-value=0.0035 Score=61.71 Aligned_cols=70 Identities=26% Similarity=0.332 Sum_probs=49.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||++||+ |++|.+++..|...+.+.. +.|.+ .+++.+++...+.++ +. ..+.+..++...+|+
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~-~~I~v----~~~~~e~~~~l~~~~-----g~----~~~~~~~~~~~~adv 65 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPP-EEIIV----TNRSEEKRAALAAEY-----GV----VTTTDNQEAVEEADV 65 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCc-ceEEE----eCCCHHHHHHHHHHc-----CC----cccCcHHHHHhhCCE
Confidence 579999995 9999999999999995543 23544 477766665333322 21 124566788999999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
||++.
T Consensus 66 v~Lav 70 (266)
T COG0345 66 VFLAV 70 (266)
T ss_pred EEEEe
Confidence 99873
No 96
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.98 E-value=0.0038 Score=66.51 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC---------CcccEEEecCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP---------LLREVKIGINP 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~---------~~~~v~i~~~~ 166 (442)
||||+||| +|.||..++-.|+..|. + -.+..+ |.++++.+.+-.......-+ ...+.+.+++.
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~-g--~~V~gv----D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~ 72 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCP-D--IEVVVV----DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDV 72 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCC-C--CeEEEE----ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCH
Confidence 57999999 59999999999998752 1 124443 34445554332211110000 01236677766
Q ss_pred ccccCCCcEEEEeCCcCCCCCC----cHHhHHHHHHHHHHHHHHHHHhhhCCCeE-EEEeCCchhH
Q 013466 167 YELFEDAEWALLIGAKPRGPGM----ERAGLLDINGQIFAEQGKALNAVASRNVK-VIVVGNPCNT 227 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~kpg~----~r~dll~~N~~Ii~~i~~~I~~~a~p~a~-vivvtNPvd~ 227 (442)
.+++++||++|++.+.|.++.. ...| ..-+.+.++.|.++..++.+ |+--|-|..+
T Consensus 73 ~~~i~~advi~I~V~TP~~~~g~~~~~~~D-----ls~v~~a~~~i~~~l~~~~lVv~~STvp~Gt 133 (473)
T PLN02353 73 EKHVAEADIVFVSVNTPTKTRGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (473)
T ss_pred HHHHhcCCEEEEEeCCCCCCCCCcCCCCCc-----HHHHHHHHHHHHhhCCCCcEEEEeCCCCCCh
Confidence 7789999999999998864321 1222 23455555666665433333 2223566643
No 97
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.92 E-value=0.016 Score=57.05 Aligned_cols=116 Identities=20% Similarity=0.124 Sum_probs=77.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC-------
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------- 165 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~------- 165 (442)
+++..+.|.||+++||..++..|+..|. ++.| +.|++++|+.++.+|++.. . ..+.+ ..|
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-----~liL----vaR~~~kL~~la~~l~~~~-~--v~v~vi~~DLs~~~~~ 71 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-----NLIL----VARREDKLEALAKELEDKT-G--VEVEVIPADLSDPEAL 71 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCcHHHHHHHHHHHHHhh-C--ceEEEEECcCCChhHH
Confidence 3456899999999999999999999885 3555 4788999999999998653 1 12322 112
Q ss_pred ------cccccCCCcEEEEeCCcCCC------CCCcHHhHHHHHHHHHHHHH----HHHHhhhCCCeEEEEeCC
Q 013466 166 ------PYELFEDAEWALLIGAKPRG------PGMERAGLLDINGQIFAEQG----KALNAVASRNVKVIVVGN 223 (442)
Q Consensus 166 ------~~eal~dADiVIi~ag~~~k------pg~~r~dll~~N~~Ii~~i~----~~I~~~a~p~a~vivvtN 223 (442)
..+..-+.|+.|..||...- +..+-.+++.-|+--+..+. +.+.+. ..|.||+++-
T Consensus 72 ~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~--~~G~IiNI~S 143 (265)
T COG0300 72 ERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVER--GAGHIINIGS 143 (265)
T ss_pred HHHHHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 11222368999999886531 22244567777765554444 455552 3567777764
No 98
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.89 E-value=0.006 Score=63.13 Aligned_cols=75 Identities=21% Similarity=0.246 Sum_probs=48.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE--ecCcccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i--~~~~~eal~dA 173 (442)
|+||.|||| |+||+.++..|++.+. + +|.+ .|++.+++...+... +.... ...+.+ .....+.+++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~---~V~i----AdRs~~~~~~i~~~~-~~~v~-~~~vD~~d~~al~~li~~~ 69 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-G---EVTI----ADRSKEKCARIAELI-GGKVE-ALQVDAADVDALVALIKDF 69 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-c---eEEE----EeCCHHHHHHHHhhc-cccce-eEEecccChHHHHHHHhcC
Confidence 679999996 9999999999999886 2 3666 366766665443321 11000 001111 12246889999
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+||.++.
T Consensus 70 d~VIn~~p 77 (389)
T COG1748 70 DLVINAAP 77 (389)
T ss_pred CEEEEeCC
Confidence 99999866
No 99
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.88 E-value=0.0061 Score=60.32 Aligned_cols=66 Identities=21% Similarity=0.232 Sum_probs=42.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+||| .|.+|..++..|...+. .|.++ |++.+.++. +.+.. .+.....+.+++++||+|
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~-----~V~~~----d~~~~~~~~-a~~~g--------~~~~~~~~~~~~~~aDlV 61 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGH-----TVYGV----SRRESTCER-AIERG--------LVDEASTDLSLLKDCDLV 61 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHH-HHHCC--------CcccccCCHhHhcCCCEE
Confidence 4899999 59999999999998764 25553 444444432 22111 011123345678999999
Q ss_pred EEeCC
Q 013466 177 LLIGA 181 (442)
Q Consensus 177 Ii~ag 181 (442)
|++..
T Consensus 62 ilavp 66 (279)
T PRK07417 62 ILALP 66 (279)
T ss_pred EEcCC
Confidence 99843
No 100
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.87 E-value=0.0051 Score=53.07 Aligned_cols=98 Identities=20% Similarity=0.177 Sum_probs=55.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVI 177 (442)
||+|+||+|.+|..++..|...+-+. +. .++....+..+.-.. ..... ....+..+...+.+.+.++|+||
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e----~~-~~~~~~~~~g~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~Dvvf 71 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFE----LV-ALVSSSRSAGKPLSE---VFPHP-KGFEDLSVEDADPEELSDVDVVF 71 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEE----EE-EEEESTTTTTSBHHH---TTGGG-TTTEEEBEEETSGHHHTTESEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCcc----EE-EeeeeccccCCeeeh---hcccc-ccccceeEeecchhHhhcCCEEE
Confidence 79999999999999999999966432 21 222222111111111 11000 11124445445678889999999
Q ss_pred EeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 178 i~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++.+ ....+++++.+.+ .+.+||-.+.
T Consensus 72 ~a~~----------------~~~~~~~~~~~~~---~g~~ViD~s~ 98 (121)
T PF01118_consen 72 LALP----------------HGASKELAPKLLK---AGIKVIDLSG 98 (121)
T ss_dssp E-SC----------------HHHHHHHHHHHHH---TTSEEEESSS
T ss_pred ecCc----------------hhHHHHHHHHHhh---CCcEEEeCCH
Confidence 9855 2455666666644 3556655553
No 101
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=96.84 E-value=0.027 Score=58.56 Aligned_cols=76 Identities=11% Similarity=0.144 Sum_probs=46.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC--------cccEEEecCccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--------LREVKIGINPYE 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~--------~~~v~i~~~~~e 168 (442)
|||+||| +|.||..++..++. |. ++..+ |+++++++..........-+. ..+.+.+++..+
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA~-G~-----~Vigv----D~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~ 69 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIAQ-NH-----EVVAL----DILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE 69 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHHh-CC-----cEEEE----ECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh
Confidence 5899999 59999999987775 52 25553 444555543322111110000 113444455577
Q ss_pred ccCCCcEEEEeCCcC
Q 013466 169 LFEDAEWALLIGAKP 183 (442)
Q Consensus 169 al~dADiVIi~ag~~ 183 (442)
+.++||+||++...|
T Consensus 70 ~~~~ad~vii~Vpt~ 84 (388)
T PRK15057 70 AYRDADYVIIATPTD 84 (388)
T ss_pred hhcCCCEEEEeCCCC
Confidence 889999999987765
No 102
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.76 E-value=0.013 Score=59.17 Aligned_cols=121 Identities=12% Similarity=0.029 Sum_probs=76.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcc----cEEEecCccccc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR----EVKIGINPYELF 170 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~----~v~i~~~~~eal 170 (442)
..++|+|.||+|.||++++..|+++|+. ....+ . ...++++ ..+..+|+... ..+. ++.-...-.+++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~----V~gtV-R-~~~~~k~-~~~L~~l~~a~-~~l~l~~aDL~d~~sf~~ai 76 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYT----VRGTV-R-DPEDEKK-TEHLRKLEGAK-ERLKLFKADLLDEGSFDKAI 76 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCE----EEEEE-c-Ccchhhh-HHHHHhcccCc-ccceEEeccccccchHHHHH
Confidence 4579999999999999999999999972 12221 1 1222222 23566666443 2111 111112236789
Q ss_pred CCCcEEEEeCCcCCCCCC-cHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 171 EDAEWALLIGAKPRGPGM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 171 ~dADiVIi~ag~~~kpg~-~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
++||.|+.+|....-... ...++++-+++-...+.+.+.+. +..+=+|+|.-+
T Consensus 77 ~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~--~sVkrvV~TSS~ 130 (327)
T KOG1502|consen 77 DGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKT--KSVKRVVYTSST 130 (327)
T ss_pred hCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhcc--CCcceEEEeccH
Confidence 999999999764321122 24567888888888999998885 366656666543
No 103
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=96.73 E-value=0.0032 Score=64.77 Aligned_cols=128 Identities=17% Similarity=0.243 Sum_probs=71.9
Q ss_pred CcceeeEEeecccchHHhhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcc
Q 013466 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS 152 (442)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~ 152 (442)
|.||.++|.- +..++ .+..+.+||.|+||+|.||++++..|...|. .|... ++..... +...
T Consensus 1 ~~~~~~~~~~-~~~~~--~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~-----~V~~v----~r~~~~~------~~~~ 62 (370)
T PLN02695 1 ESYGAYTLAE-LEREP--YWPSEKLRICITGAGGFIASHIARRLKAEGH-----YIIAS----DWKKNEH------MSED 62 (370)
T ss_pred CCccccchhh-cCCCC--CCCCCCCEEEEECCccHHHHHHHHHHHhCCC-----EEEEE----Eeccccc------cccc
Confidence 4688777643 22222 2444568999999999999999999998774 24332 2211110 0000
Q ss_pred cCCCcccEEEecC------cccccCCCcEEEEeCCcCCCCCC---cHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 153 LFPLLREVKIGIN------PYELFEDAEWALLIGAKPRGPGM---ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 153 ~~~~~~~v~i~~~------~~eal~dADiVIi~ag~~~kpg~---~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
. ....+. ..| ..+.++++|+||.+++.....+. .....+..|......+.+.+.+. +.. .++.++.
T Consensus 63 ~--~~~~~~-~~Dl~d~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~-~vk-~~V~~SS 137 (370)
T PLN02695 63 M--FCHEFH-LVDLRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARIN-GVK-RFFYASS 137 (370)
T ss_pred c--ccceEE-ECCCCCHHHHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHh-CCC-EEEEeCc
Confidence 0 000111 111 12346789999998864321111 22334667888888888888774 232 5555554
No 104
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.71 E-value=0.02 Score=57.43 Aligned_cols=70 Identities=23% Similarity=0.259 Sum_probs=44.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
.+||+||| +|.+|..++..|...+... .|.++ |++.+.++ .+.++ .. ...+..+..+.+++||+
T Consensus 6 ~~~I~IIG-~G~mG~sla~~l~~~g~~~---~V~~~----dr~~~~~~-~a~~~-----g~--~~~~~~~~~~~~~~aDv 69 (307)
T PRK07502 6 FDRVALIG-IGLIGSSLARAIRRLGLAG---EIVGA----DRSAETRA-RAREL-----GL--GDRVTTSAAEAVKGADL 69 (307)
T ss_pred CcEEEEEe-eCHHHHHHHHHHHhcCCCc---EEEEE----ECCHHHHH-HHHhC-----CC--CceecCCHHHHhcCCCE
Confidence 36899999 5999999999999877421 24443 44444443 22211 11 11223445677899999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
||++..
T Consensus 70 Viiavp 75 (307)
T PRK07502 70 VILCVP 75 (307)
T ss_pred EEECCC
Confidence 999854
No 105
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=96.68 E-value=0.018 Score=60.85 Aligned_cols=113 Identities=13% Similarity=0.101 Sum_probs=68.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC-cccccC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN-PYELFE 171 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~-~~eal~ 171 (442)
++.|||.|+||+|.||++++..|+..|. .|...+.+.....+.+ ..+. .. + .+... .| ..+.+.
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~-----~V~~ldr~~~~~~~~~----~~~~-~~-~---~~~~~~~Di~~~~~~ 183 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD-----EVIVIDNFFTGRKENL----VHLF-GN-P---RFELIRHDVVEPILL 183 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC-----EEEEEeCCCCccHhHh----hhhc-cC-C---ceEEEECcccccccc
Confidence 4568999999999999999999999874 2443221111011111 1111 00 0 12211 11 234577
Q ss_pred CCcEEEEeCCcCC--CCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 172 DAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 172 dADiVIi~ag~~~--kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++|+||.+|+... ....+..+.+..|+.-...+.+.+.+. + ..+|.++.
T Consensus 184 ~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~-g--~r~V~~SS 234 (436)
T PLN02166 184 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-G--ARFLLTST 234 (436)
T ss_pred CCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHh-C--CEEEEECc
Confidence 8999999887432 122345677889999999999988875 3 36666664
No 106
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.68 E-value=0.0053 Score=54.14 Aligned_cols=75 Identities=21% Similarity=0.128 Sum_probs=52.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|.|+|| |++|..+++.|...|. +.|.+ .+|+.++++.++..+.... ..+.-..+..+.+.++|+
T Consensus 12 ~~~vlviGa-Gg~ar~v~~~L~~~g~----~~i~i----~nRt~~ra~~l~~~~~~~~----~~~~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 12 GKRVLVIGA-GGAARAVAAALAALGA----KEITI----VNRTPERAEALAEEFGGVN----IEAIPLEDLEEALQEADI 78 (135)
T ss_dssp TSEEEEESS-SHHHHHHHHHHHHTTS----SEEEE----EESSHHHHHHHHHHHTGCS----EEEEEGGGHCHHHHTESE
T ss_pred CCEEEEECC-HHHHHHHHHHHHHcCC----CEEEE----EECCHHHHHHHHHHcCccc----cceeeHHHHHHHHhhCCe
Confidence 579999996 9999999999999886 23655 4788888887777662111 112223445567889999
Q ss_pred EEEeCCcC
Q 013466 176 ALLIGAKP 183 (442)
Q Consensus 176 VIi~ag~~ 183 (442)
||.+.+.+
T Consensus 79 vI~aT~~~ 86 (135)
T PF01488_consen 79 VINATPSG 86 (135)
T ss_dssp EEE-SSTT
T ss_pred EEEecCCC
Confidence 99985544
No 107
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.61 E-value=0.0092 Score=59.43 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=52.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||.|+|| |++|.++++.|+..|.- .|.+ .|++.+++++++.++.+.. +. ..+....+.++.++++|+
T Consensus 127 ~k~vlIlGa-GGaaraia~aL~~~G~~----~I~I----~nR~~~ka~~la~~l~~~~-~~-~~~~~~~~~~~~~~~aDi 195 (284)
T PRK12549 127 LERVVQLGA-GGAGAAVAHALLTLGVE----RLTI----FDVDPARAAALADELNARF-PA-ARATAGSDLAAALAAADG 195 (284)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCCC----EEEE----ECCCHHHHHHHHHHHHhhC-CC-eEEEeccchHhhhCCCCE
Confidence 468999995 99999999999988852 3655 3677788898888886542 21 112111223567899999
Q ss_pred EEEe
Q 013466 176 ALLI 179 (442)
Q Consensus 176 VIi~ 179 (442)
||.+
T Consensus 196 VIna 199 (284)
T PRK12549 196 LVHA 199 (284)
T ss_pred EEEC
Confidence 9987
No 108
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.54 E-value=0.015 Score=61.05 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC----------cccEEEecC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL----------LREVKIGIN 165 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~----------~~~v~i~~~ 165 (442)
++||+||| .|.||..++..|+..|. ++..+ |+++++++.+.....+...+- ....+.++
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~-----~V~~~----D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~- 71 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQK-----QVIGV----DINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT- 71 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCC-----EEEEE----eCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec-
Confidence 57999999 59999999999999873 25443 445555554321110000000 01122322
Q ss_pred cccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC-CchhHH
Q 013466 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTN 228 (442)
Q Consensus 166 ~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt-NPvd~l 228 (442)
++++||+||++...|.++.. .. +...+.+....|.++..++.+||+-| -|....
T Consensus 72 ---~~~~aDvvii~vptp~~~~~-~~-----dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt 126 (415)
T PRK11064 72 ---TPEPADAFLIAVPTPFKGDH-EP-----DLTYVEAAAKSIAPVLKKGDLVILESTSPVGAT 126 (415)
T ss_pred ---ccccCCEEEEEcCCCCCCCC-Cc-----ChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHH
Confidence 24589999999887653321 11 12334444455555544555555544 455433
No 109
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.53 E-value=0.025 Score=51.42 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=58.9
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC-------cccccC
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-------PYELFE 171 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~-------~~eal~ 171 (442)
|.|+||+|.+|..++..|+..+. +|... -++.++++. . + ++.+... ..++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-----~V~~~----~R~~~~~~~--------~-~---~~~~~~~d~~d~~~~~~al~ 59 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-----EVTAL----VRSPSKAED--------S-P---GVEIIQGDLFDPDSVKAALK 59 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-----EEEEE----ESSGGGHHH--------C-T---TEEEEESCTTCHHHHHHHHT
T ss_pred eEEECCCChHHHHHHHHHHHCCC-----EEEEE----ecCchhccc--------c-c---ccccceeeehhhhhhhhhhh
Confidence 78999999999999999999883 24442 344455443 1 1 2222211 256789
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++|.||.+.|.+.+ + ...++.+.+.+++. +. ..++.++
T Consensus 60 ~~d~vi~~~~~~~~------~-----~~~~~~~~~a~~~~-~~-~~~v~~s 97 (183)
T PF13460_consen 60 GADAVIHAAGPPPK------D-----VDAAKNIIEAAKKA-GV-KRVVYLS 97 (183)
T ss_dssp TSSEEEECCHSTTT------H-----HHHHHHHHHHHHHT-TS-SEEEEEE
T ss_pred hcchhhhhhhhhcc------c-----cccccccccccccc-cc-ccceeee
Confidence 99999999875543 1 56777888888774 32 2455444
No 110
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.43 E-value=0.015 Score=58.33 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=53.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
.+||+|||+ |.+|.+++..|...|. +|.++ +++.. .+..+++++||+
T Consensus 4 ~m~I~iiG~-G~~G~~lA~~l~~~G~-----~V~~~----~r~~~-----------------------~~~~~~~~~adv 50 (308)
T PRK14619 4 PKTIAILGA-GAWGSTLAGLASANGH-----RVRVW----SRRSG-----------------------LSLAAVLADADV 50 (308)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCC-----EEEEE----eCCCC-----------------------CCHHHHHhcCCE
Confidence 468999995 9999999999999874 35553 22211 123467789999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhh-hCCCeEEEEeCCc
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV-ASRNVKVIVVGNP 224 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~-a~p~a~vivvtNP 224 (442)
||++.- .+.++++++.+..+ ..++.+++..++.
T Consensus 51 vi~~vp----------------~~~~~~v~~~l~~~~~~~~~ivi~~s~g 84 (308)
T PRK14619 51 IVSAVS----------------MKGVRPVAEQVQALNLPPETIIVTATKG 84 (308)
T ss_pred EEEECC----------------hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence 999833 12355555556542 2467788888873
No 111
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.40 E-value=0.015 Score=58.18 Aligned_cols=108 Identities=12% Similarity=0.058 Sum_probs=59.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC-cccEEEecCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~-~~~v~i~~~~~eal~dADi 175 (442)
|||.|+||+|.+|++++..|...|. +|... .++..... .+.+..... ..++.-.....++++++|+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~-----~V~~l----~R~~~~~~----~l~~~~v~~v~~Dl~d~~~l~~al~g~d~ 67 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY-----QVRCL----VRNLRKAS----FLKEWGAELVYGDLSLPETLPPSFKGVTA 67 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----eEEEE----EcChHHhh----hHhhcCCEEEECCCCCHHHHHHHHCCCCE
Confidence 5899999999999999999998874 24331 33322221 111110000 0000000112567899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
||.+++... .+..+....|..-...+.+++++. +-. .+|.+|
T Consensus 68 Vi~~~~~~~---~~~~~~~~~~~~~~~~l~~aa~~~-gvk-r~I~~S 109 (317)
T CHL00194 68 IIDASTSRP---SDLYNAKQIDWDGKLALIEAAKAA-KIK-RFIFFS 109 (317)
T ss_pred EEECCCCCC---CCccchhhhhHHHHHHHHHHHHHc-CCC-EEEEec
Confidence 998765321 112234455666667777777764 333 455555
No 112
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=96.37 E-value=0.017 Score=56.60 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=41.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||+|||+ |++|.+++..|...+.+.. +.+.. + +++.+.+ .+....++.+.++++|+|
T Consensus 4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~-~~i~~--~--~~~~~~~----------------~~~~~~~~~~~~~~~D~V 61 (260)
T PTZ00431 4 IRVGFIGL-GKMGSALAYGIENSNIIGK-ENIYY--H--TPSKKNT----------------PFVYLQSNEELAKTCDII 61 (260)
T ss_pred CEEEEECc-cHHHHHHHHHHHhCCCCCc-ceEEE--E--CCChhcC----------------CeEEeCChHHHHHhCCEE
Confidence 68999995 9999999999998876543 23444 2 3332221 112334556678899999
Q ss_pred EEe
Q 013466 177 LLI 179 (442)
Q Consensus 177 Ii~ 179 (442)
|++
T Consensus 62 ila 64 (260)
T PTZ00431 62 VLA 64 (260)
T ss_pred EEE
Confidence 987
No 113
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.37 E-value=0.012 Score=59.18 Aligned_cols=108 Identities=20% Similarity=0.211 Sum_probs=66.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|+|| |.||+.++..|.+.+ - .+.+... ++..+++...-..+.+... ..........+.+.+..+|+|
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g-~----~V~~~~R--~~~~~~l~~~GL~i~~~~~-~~~~~~~~~~~~~~~~~~Dlv 71 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAG-H----DVTLLVR--SRRLEALKKKGLRIEDEGG-NFTTPVVAATDAEALGPADLV 71 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCC-C----eEEEEec--HHHHHHHHhCCeEEecCCC-ccccccccccChhhcCCCCEE
Confidence 69999995 999999999999988 2 1444221 2111333322222322221 001123345567888899999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHH
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt 229 (442)
|++...- -..+..+.+..+.+++++|+.+-|=....-
T Consensus 72 iv~vKa~----------------q~~~al~~l~~~~~~~t~vl~lqNG~g~~e 108 (307)
T COG1893 72 IVTVKAY----------------QLEEALPSLAPLLGPNTVVLFLQNGLGHEE 108 (307)
T ss_pred EEEeccc----------------cHHHHHHHhhhcCCCCcEEEEEeCCCcHHH
Confidence 9984421 134555666666678889999999876655
No 114
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.36 E-value=0.042 Score=54.66 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHH-HHHHHHhcccCCCcccEEEecC-cccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGIN-PYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~-g~a~DL~~~~~~~~~~v~i~~~-~~eal~dA 173 (442)
++||+|+| .|.||..++..|...|.. +.+.. .|++.+.++ +..+++.|. ...+ ..++.++|
T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~~~g~~-----v~i~g--~d~~~~~~~~a~~lgv~d~---------~~~~~~~~~~~~a 65 (279)
T COG0287 3 SMKVGIVG-LGLMGGSLARALKEAGLV-----VRIIG--RDRSAATLKAALELGVIDE---------LTVAGLAEAAAEA 65 (279)
T ss_pred CcEEEEEC-CchHHHHHHHHHHHcCCe-----EEEEe--ecCcHHHHHHHhhcCcccc---------cccchhhhhcccC
Confidence 57999999 599999999999999974 44433 344433322 111222111 1122 26889999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHH
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK 234 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k 234 (442)
|+||++.- +....++.+++..+..++++|.-++--=......+.+
T Consensus 66 D~VivavP----------------i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~ 110 (279)
T COG0287 66 DLVIVAVP----------------IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEK 110 (279)
T ss_pred CEEEEecc----------------HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHH
Confidence 99999844 2233333433343335678887776443333333333
No 115
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.33 E-value=0.028 Score=56.47 Aligned_cols=124 Identities=16% Similarity=0.126 Sum_probs=68.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHH--HhcccCCCcccEEEecCcccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--LEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~D--L~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
.|||+|+|| |.||..++..|...|. ++.+. ++..+.++.+-.+ +.-........+.+...+.+.....
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~-----~V~lv----~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~ 71 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL-----PVRLI----LRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPI 71 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC-----CeEEE----EechHHHHHHhhcCCeEEeeCCcceeeccCCCCccccccc
Confidence 368999996 9999999999998773 36663 3333344322211 1000000001111212223445688
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCC-cceeeccch
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP-AKNFHALTR 249 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p-~kvig~gT~ 249 (442)
|+||++... .. ..+..+.+..+.++++.++.+-|=++..-.+. +. ++ .+++++.+.
T Consensus 72 D~viv~vK~------------~~----~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~-~~---~~~~~v~~g~~~ 128 (305)
T PRK05708 72 HRLLLACKA------------YD----AEPAVASLAHRLAPGAELLLLQNGLGSQDAVA-AR---VPHARCIFASST 128 (305)
T ss_pred CEEEEECCH------------Hh----HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHH-Hh---CCCCcEEEEEee
Confidence 999998441 11 22333445555568889999999887654433 22 23 356655443
No 116
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.25 E-value=0.028 Score=54.76 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=45.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|||+ |++|..++..|...+.-. +.+.+ .+++.++++..+..+ + .+.+..+..+.+++||+|
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~--~~i~v----~~r~~~~~~~l~~~~-----~---~~~~~~~~~~~~~~aDvV 65 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADV--SEIIV----SPRNAQIAARLAERF-----P---KVRIAKDNQAVVDRSDVV 65 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCCh--heEEE----ECCCHHHHHHHHHHc-----C---CceEeCCHHHHHHhCCEE
Confidence 48999995 999999999999877411 12333 255556555333221 1 134445556678899999
Q ss_pred EEeCC
Q 013466 177 LLIGA 181 (442)
Q Consensus 177 Ii~ag 181 (442)
|++..
T Consensus 66 ilav~ 70 (258)
T PRK06476 66 FLAVR 70 (258)
T ss_pred EEEeC
Confidence 99844
No 117
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=96.25 E-value=0.02 Score=57.70 Aligned_cols=112 Identities=10% Similarity=0.029 Sum_probs=66.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-c------Cccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I------NPYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~------~~~e 168 (442)
.++|.|+||+|.||++++..|+..+-.. .|.+. +++.........++.. .++.+. . ...+
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~---~V~~~----~r~~~~~~~~~~~~~~------~~~~~v~~Dl~d~~~l~~ 70 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPK---KIIIY----SRDELKQWEMQQKFPA------PCLRFFIGDVRDKERLTR 70 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCc---EEEEE----cCChhHHHHHHHHhCC------CcEEEEEccCCCHHHHHH
Confidence 4689999999999999999999865211 24332 2222222222222211 012111 1 1234
Q ss_pred ccCCCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 169 LFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 169 al~dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++++.|+||..+|....+ ..+..+.+..|..-...+.+.+.+. +. ..|+.++
T Consensus 71 ~~~~iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~-~~-~~iV~~S 124 (324)
T TIGR03589 71 ALRGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDN-GV-KRVVALS 124 (324)
T ss_pred HHhcCCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEEe
Confidence 577899999988864322 2244567888988888888887774 22 3555555
No 118
>PLN02206 UDP-glucuronate decarboxylase
Probab=96.22 E-value=0.037 Score=58.53 Aligned_cols=112 Identities=12% Similarity=0.142 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC-cccccCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN-PYELFED 172 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~-~~eal~d 172 (442)
+.+||.|+||+|.||++++..|+..|. .|.. + |+..........+. ...+ ++.. ..| ....+.+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-----~V~~--l--d~~~~~~~~~~~~~--~~~~---~~~~i~~D~~~~~l~~ 183 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-----SVIV--V--DNFFTGRKENVMHH--FSNP---NFELIRHDVVEPILLE 183 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-----EEEE--E--eCCCccchhhhhhh--ccCC---ceEEEECCccChhhcC
Confidence 457999999999999999999999874 2433 1 11101111111111 0001 1222 112 2345678
Q ss_pred CcEEEEeCCcCC--CCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 173 AEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 173 ADiVIi~ag~~~--kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+|+||.+|+... ....+-.+.+..|+.....+.+.+.+. + ..+|.++.
T Consensus 184 ~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~-g--~r~V~~SS 233 (442)
T PLN02206 184 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-G--ARFLLTST 233 (442)
T ss_pred CCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHh-C--CEEEEECC
Confidence 999999887432 111234567788998889999888774 2 36776664
No 119
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.22 E-value=0.02 Score=58.41 Aligned_cols=97 Identities=24% Similarity=0.337 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
..+|.|+||+|.||+.++..|... +. . .+.+ .+++.++++..+.++.+.. + .+..+++.++|
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv-~---~lil----v~R~~~rl~~La~el~~~~------i---~~l~~~l~~aD 217 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGV-A---ELLL----VARQQERLQELQAELGGGK------I---LSLEEALPEAD 217 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCC-C---EEEE----EcCCHHHHHHHHHHhcccc------H---HhHHHHHccCC
Confidence 469999999899999999999854 32 1 2444 3566677776666553221 1 13457899999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l 228 (442)
+|+.+++.+...-.+..++ .+..+++-++-|=|+-
T Consensus 218 iVv~~ts~~~~~~I~~~~l-------------------~~~~~viDiAvPRDVd 252 (340)
T PRK14982 218 IVVWVASMPKGVEIDPETL-------------------KKPCLMIDGGYPKNLD 252 (340)
T ss_pred EEEECCcCCcCCcCCHHHh-------------------CCCeEEEEecCCCCCC
Confidence 9999888664211222211 2567888888886654
No 120
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.18 E-value=0.021 Score=57.46 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC-cccEEEecCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~-~~~v~i~~~~~eal~dA 173 (442)
.++||+|||| |.||..++..|...|. ++.+...+ . .+........+....... ...+.+. ...++...+
T Consensus 4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~-----~V~~~~r~--~-~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 73 (313)
T PRK06249 4 ETPRIGIIGT-GAIGGFYGAMLARAGF-----DVHFLLRS--D-YEAVRENGLQVDSVHGDFHLPPVQAY-RSAEDMPPC 73 (313)
T ss_pred cCcEEEEECC-CHHHHHHHHHHHHCCC-----eEEEEEeC--C-HHHHHhCCeEEEeCCCCeeecCceEE-cchhhcCCC
Confidence 3579999995 9999999999998763 36554322 1 111110000010000000 0012222 234467889
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccch
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTR 249 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~ 249 (442)
|+||++.-... ..+..+.+..+.++++.++...|=.+..-.+ .+. +|. +++++.+.
T Consensus 74 D~vilavK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l-~~~---~~~~~v~~g~~~ 130 (313)
T PRK06249 74 DWVLVGLKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLGVEEQL-REI---LPAEHLLGGLCF 130 (313)
T ss_pred CEEEEEecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCCcHHHH-HHH---CCCCcEEEEeee
Confidence 99999843211 1233333444445788888898877643332 232 233 56655443
No 121
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.16 E-value=0.027 Score=60.04 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=61.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC---C
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---D 172 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~---d 172 (442)
|.+|+||| .|.+|..++..|+..|. .|.++ |++.++.+.......+. . ..+....+..+.++ +
T Consensus 1 ~~~IgvIG-LG~MG~~lA~nL~~~G~-----~V~v~----dr~~~~~~~l~~~~~~~--g--~~i~~~~s~~e~v~~l~~ 66 (470)
T PTZ00142 1 MSDIGLIG-LAVMGQNLALNIASRGF-----KISVY----NRTYEKTEEFVKKAKEG--N--TRVKGYHTLEELVNSLKK 66 (470)
T ss_pred CCEEEEEe-EhHHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHhhhhc--C--CcceecCCHHHHHhcCCC
Confidence 45899999 59999999999999885 25553 55556655443221110 0 12333344444443 5
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+|+||+..- +.+.++++.+.+..+..++.+||..+|=
T Consensus 67 ~d~Iil~v~---------------~~~~v~~vi~~l~~~L~~g~iIID~gn~ 103 (470)
T PTZ00142 67 PRKVILLIK---------------AGEAVDETIDNLLPLLEKGDIIIDGGNE 103 (470)
T ss_pred CCEEEEEeC---------------ChHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 898877632 1244555555555554578889999974
No 122
>PLN02427 UDP-apiose/xylose synthase
Probab=96.15 E-value=0.045 Score=56.33 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=62.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-C------cc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N------PY 167 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~------~~ 167 (442)
++|||.|+||+|.||++++..|+..+-. .|.. + +++.+..... .++... ....++++.. | ..
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~----~V~~--l--~r~~~~~~~l-~~~~~~--~~~~~~~~~~~Dl~d~~~l~ 81 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPH----KVLA--L--DVYNDKIKHL-LEPDTV--PWSGRIQFHRINIKHDSRLE 81 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCC----EEEE--E--ecCchhhhhh-hccccc--cCCCCeEEEEcCCCChHHHH
Confidence 3579999999999999999999986421 2332 2 3222222211 001000 0001222211 1 23
Q ss_pred cccCCCcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++++++|+||.+|+...-.. .+..+.+..|..-...+.+...+. + ..+|.++.
T Consensus 82 ~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~-~--~r~v~~SS 136 (386)
T PLN02427 82 GLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN-N--KRLIHFST 136 (386)
T ss_pred HHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhc-C--CEEEEEee
Confidence 56788999999987532111 122344556765556666666553 2 35666664
No 123
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=96.12 E-value=0.039 Score=56.78 Aligned_cols=72 Identities=10% Similarity=0.115 Sum_probs=44.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-CcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~~~eal~dADi 175 (442)
+||+|+||+|.||+.+...|....-|.. ..++++...+. .|...... .....+.. .+.+++++.|+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~---~~~~~~ss~~s----~g~~~~f~------~~~~~v~~~~~~~~~~~vDi 67 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDA---IRPVFFSTSQL----GQAAPSFG------GTTGTLQDAFDIDALKALDI 67 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCcc---ccEEEEEchhh----CCCcCCCC------CCcceEEcCcccccccCCCE
Confidence 4899999999999999999985554532 34554543322 11111111 11223332 23358999999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
|++++|
T Consensus 68 vffa~g 73 (366)
T TIGR01745 68 IITCQG 73 (366)
T ss_pred EEEcCC
Confidence 999876
No 124
>PLN02778 3,5-epimerase/4-reductase
Probab=96.10 E-value=0.066 Score=53.40 Aligned_cols=88 Identities=8% Similarity=0.049 Sum_probs=57.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
.|||.|+||+|.+|++++..|...|. ++.+.. .+ ....+.+..|+.+ .+.|+
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~-----~V~~~~--~~--~~~~~~v~~~l~~-------------------~~~D~ 60 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGI-----DFHYGS--GR--LENRASLEADIDA-------------------VKPTH 60 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCC-----EEEEec--Cc--cCCHHHHHHHHHh-------------------cCCCE
Confidence 46999999999999999999998774 243211 11 1112222223321 15799
Q ss_pred EEEeCCcCCCCC-----CcHHhHHHHHHHHHHHHHHHHHhh
Q 013466 176 ALLIGAKPRGPG-----MERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 176 VIi~ag~~~kpg-----~~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
||.+|+....+. ....+.+..|......+++.+.+.
T Consensus 61 ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~ 101 (298)
T PLN02778 61 VFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRER 101 (298)
T ss_pred EEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999887543222 234567788888888888888775
No 125
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=96.07 E-value=0.024 Score=59.66 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc----------ccEEEec
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL----------REVKIGI 164 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~----------~~v~i~~ 164 (442)
++|||+||| .|.||..++..|+. + + ++..+ |+++++.+.+. ....+.. .....+
T Consensus 5 ~~mkI~vIG-lGyvGlpmA~~la~-~-~----~V~g~----D~~~~~ve~l~----~G~~~~~e~~~~~l~~~g~l~~t- 68 (425)
T PRK15182 5 DEVKIAIIG-LGYVGLPLAVEFGK-S-R----QVVGF----DVNKKRILELK----NGVDVNLETTEEELREARYLKFT- 68 (425)
T ss_pred CCCeEEEEC-cCcchHHHHHHHhc-C-C----EEEEE----eCCHHHHHHHH----CcCCCCCCCCHHHHHhhCCeeEE-
Confidence 358999999 69999999999887 3 2 24443 44555555433 2221110 123343
Q ss_pred CcccccCCCcEEEEeCCcCCC
Q 013466 165 NPYELFEDAEWALLIGAKPRG 185 (442)
Q Consensus 165 ~~~eal~dADiVIi~ag~~~k 185 (442)
.+.+++++||++|++.+.|.+
T Consensus 69 ~~~~~~~~advvii~Vptp~~ 89 (425)
T PRK15182 69 SEIEKIKECNFYIITVPTPIN 89 (425)
T ss_pred eCHHHHcCCCEEEEEcCCCCC
Confidence 456789999999999887753
No 126
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.06 E-value=0.026 Score=56.24 Aligned_cols=66 Identities=15% Similarity=0.264 Sum_probs=45.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||++|| .|.+|+.++..|+..|. ++..+ |++.++.... +... .........++.++||+|
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~-----~v~v~----~r~~~ka~~~---~~~~------Ga~~a~s~~eaa~~aDvV 61 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGH-----EVTVY----NRTPEKAAEL---LAAA------GATVAASPAEAAAEADVV 61 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCC-----EEEEE----eCChhhhhHH---HHHc------CCcccCCHHHHHHhCCEE
Confidence 5899999 79999999999999995 24443 4554553222 2111 122334567999999999
Q ss_pred EEeCC
Q 013466 177 LLIGA 181 (442)
Q Consensus 177 Ii~ag 181 (442)
|....
T Consensus 62 itmv~ 66 (286)
T COG2084 62 ITMLP 66 (286)
T ss_pred EEecC
Confidence 98744
No 127
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.04 E-value=0.028 Score=52.32 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=59.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+||||+|.+|+.++.....+|. +...+ -+|..++... + ..+-....+---+...+++++-|+|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH----eVTAi-----vRn~~K~~~~----~-~~~i~q~Difd~~~~a~~l~g~DaV 66 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH----EVTAI-----VRNASKLAAR----Q-GVTILQKDIFDLTSLASDLAGHDAV 66 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC----eeEEE-----EeChHhcccc----c-cceeecccccChhhhHhhhcCCceE
Confidence 6999999999999999999999996 23344 2333333210 0 0000000111012234889999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
|-+-|.+. ++.+- .-.+....+...++.. -...+++++-
T Consensus 67 IsA~~~~~-~~~~~-----~~~k~~~~li~~l~~a--gv~RllVVGG 105 (211)
T COG2910 67 ISAFGAGA-SDNDE-----LHSKSIEALIEALKGA--GVPRLLVVGG 105 (211)
T ss_pred EEeccCCC-CChhH-----HHHHHHHHHHHHHhhc--CCeeEEEEcC
Confidence 98755332 22211 1123355555566652 3567777775
No 128
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=96.03 E-value=0.014 Score=57.79 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=67.4
Q ss_pred EEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC--CCcccEEEecCcccccCCCcEEEE
Q 013466 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFEDAEWALL 178 (442)
Q Consensus 101 IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~--~~~~~v~i~~~~~eal~dADiVIi 178 (442)
|+||+|.+|++++..|+..+-.. .|.. +|......... ++.+... ....+++-..+..++++++|+||.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~---~Vr~--~d~~~~~~~~~----~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H 72 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIY---EVRV--LDRSPPPKFLK----DLQKSGVKEYIQGDITDPESLEEALEGVDVVFH 72 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCce---EEEE--cccccccccch----hhhcccceeEEEeccccHHHHHHHhcCCceEEE
Confidence 89999999999999999988421 2333 32222111111 1111110 000122222334689999999999
Q ss_pred eCCcCCCCC-CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 179 IGAKPRGPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 179 ~ag~~~kpg-~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+|....-.+ ..+..+...|++=.+.+.++..+. +.+-+|+|.-+
T Consensus 73 ~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~---~VkrlVytSS~ 117 (280)
T PF01073_consen 73 TAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKA---GVKRLVYTSSI 117 (280)
T ss_pred eCccccccCcccHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEEcCc
Confidence 987533233 356678888999999999887773 44444455443
No 129
>PLN00198 anthocyanidin reductase; Provisional
Probab=96.02 E-value=0.036 Score=55.76 Aligned_cols=114 Identities=14% Similarity=0.128 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC------ccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------PYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~------~~e 168 (442)
++||.|+||+|.||++++..|+..|. .|.+...+. +..... .++.... .. .++.+ ..| ..+
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~-----~V~~~~r~~----~~~~~~-~~~~~~~-~~-~~~~~~~~Dl~d~~~~~~ 76 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGY-----AVNTTVRDP----ENQKKI-AHLRALQ-EL-GDLKIFGADLTDEESFEA 76 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCC-----EEEEEECCC----CCHHHH-HHHHhcC-CC-CceEEEEcCCCChHHHHH
Confidence 56899999999999999999999774 243322221 111111 1111100 00 11221 111 234
Q ss_pred ccCCCcEEEEeCCcCCCCCCc-HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~-r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.++++|+||..|+.......+ ..+++..|..-...+.+.+.+.. .-..+++++
T Consensus 77 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~-~~~~~v~~S 130 (338)
T PLN00198 77 PIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAK-SVKRVILTS 130 (338)
T ss_pred HHhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcC-CccEEEEee
Confidence 578899999988743211112 23456788888888888877742 223555554
No 130
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.02 E-value=0.029 Score=56.10 Aligned_cols=96 Identities=13% Similarity=0.095 Sum_probs=56.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+||| .|.+|..++..|...+. ++.++ |++.++++..... ... . .....+..+.++++|+|
T Consensus 1 M~Ig~IG-lG~mG~~la~~L~~~g~-----~V~~~----dr~~~~~~~l~~~--g~~-~----~~s~~~~~~~~~~~dvI 63 (298)
T TIGR00872 1 MQLGLIG-LGRMGANIVRRLAKRGH-----DCVGY----DHDQDAVKAMKED--RTT-G----VANLRELSQRLSAPRVV 63 (298)
T ss_pred CEEEEEc-chHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHc--CCc-c----cCCHHHHHhhcCCCCEE
Confidence 4899999 59999999999998774 25553 5555655543321 110 0 00001113356789999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
|++.- . ..++++.+.+.....++.++|..+|..
T Consensus 64 i~~vp-----~-----------~~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 64 WVMVP-----H-----------GIVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred EEEcC-----c-----------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 98732 1 134444444544444667888887753
No 131
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=96.00 E-value=0.11 Score=52.76 Aligned_cols=118 Identities=14% Similarity=0.028 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-C------cc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N------PY 167 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~------~~ 167 (442)
+++||.|+||+|.||++++..|+..+. .|...+.........+......+.+. . ..++.... | ..
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~-----~V~~~d~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~Di~d~~~l~ 85 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQ-----TVIGLDNFSTGYQHNLDDVRTSVSEE--Q-WSRFIFIQGDIRKFTDCQ 85 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCC-----EEEEEeCCCCcchhhhhhhhhccccc--c-CCceEEEEccCCCHHHHH
Confidence 357999999999999999999998773 24332211110011111110000000 0 01222221 2 12
Q ss_pred cccCCCcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 168 ELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+.++++|+||..|+.+..+. .+..+....|..-...+.+.+.+. +.. .++.++
T Consensus 86 ~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~-~~v~~S 140 (348)
T PRK15181 86 KACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDA-HVS-SFTYAA 140 (348)
T ss_pred HHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEee
Confidence 34788999999987543221 234556778888888888888774 222 455554
No 132
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.00 E-value=0.023 Score=56.40 Aligned_cols=63 Identities=10% Similarity=0.156 Sum_probs=42.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVI 177 (442)
||+||| .|.+|..++..|+..|. +|.++ |++.++++.. .+. . .....+..+++++||+||
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~~G~-----~V~~~----dr~~~~~~~~----~~~--g----~~~~~~~~~~~~~aDivi 60 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAKAGY-----QLHVT----TIGPEVADEL----LAA--G----AVTAETARQVTEQADVIF 60 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHHCCC-----eEEEE----cCCHHHHHHH----HHC--C----CcccCCHHHHHhcCCEEE
Confidence 699999 59999999999998774 25553 5555554432 111 1 122244568899999999
Q ss_pred EeC
Q 013466 178 LIG 180 (442)
Q Consensus 178 i~a 180 (442)
++.
T Consensus 61 ~~v 63 (291)
T TIGR01505 61 TMV 63 (291)
T ss_pred Eec
Confidence 984
No 133
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.00 E-value=0.033 Score=56.08 Aligned_cols=103 Identities=20% Similarity=0.219 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
..+||+|||+ |.+|..++..|...+.. .|.+ .+++.++++..+..+.. .+....+..+.+.++|
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~----~V~v----~~r~~~ra~~la~~~g~-------~~~~~~~~~~~l~~aD 240 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVA----EITI----ANRTYERAEELAKELGG-------NAVPLDELLELLNEAD 240 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHcCC-------eEEeHHHHHHHHhcCC
Confidence 3579999996 99999999999875531 3555 36666666666555431 1222233567789999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l 228 (442)
+||.+.+.|.- ..++.... ........+++-+++|-|+=
T Consensus 241 vVi~at~~~~~------------~~~~~~~~---~~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 241 VVISATGAPHY------------AKIVERAM---KKRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred EEEECCCCCch------------HHHHHHHH---hhCCCCCeEEEEeCCCCCCc
Confidence 99998775431 12222222 11112467899999998754
No 134
>PLN02256 arogenate dehydrogenase
Probab=95.97 E-value=0.094 Score=52.77 Aligned_cols=92 Identities=18% Similarity=0.153 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc-CCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal-~dA 173 (442)
+++||+||| .|.+|..++..|...|. .|.. + +++.. ...+.++ . +....+..+.+ .++
T Consensus 35 ~~~kI~IIG-~G~mG~slA~~L~~~G~-----~V~~--~--d~~~~--~~~a~~~-----g----v~~~~~~~e~~~~~a 93 (304)
T PLN02256 35 RKLKIGIVG-FGNFGQFLAKTFVKQGH-----TVLA--T--SRSDY--SDIAAEL-----G----VSFFRDPDDFCEEHP 93 (304)
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhCCC-----EEEE--E--ECccH--HHHHHHc-----C----CeeeCCHHHHhhCCC
Confidence 457999999 59999999999988662 2443 2 33321 1222221 1 12233334444 479
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHH-HhhhCCCeEEEEeCC
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKAL-NAVASRNVKVIVVGN 223 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I-~~~a~p~a~vivvtN 223 (442)
|+||++... ..+.++.+.+ ..+..++++|+.++.
T Consensus 94 DvVilavp~----------------~~~~~vl~~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 94 DVVLLCTSI----------------LSTEAVLRSLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred CEEEEecCH----------------HHHHHHHHhhhhhccCCCCEEEecCC
Confidence 999998441 2234444444 222346788877776
No 135
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=95.96 E-value=0.053 Score=51.92 Aligned_cols=97 Identities=15% Similarity=0.228 Sum_probs=66.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||+|||+ |.||..++..+-.+. .+- +.+.+ .|++.+++.....-+.. +..++..+.+.+.|+|
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~-~~~-e~v~v----~D~~~ek~~~~~~~~~~---------~~~s~ide~~~~~Dlv 64 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGR-VDF-ELVAV----YDRDEEKAKELEASVGR---------RCVSDIDELIAEVDLV 64 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCC-cce-eEEEE----ecCCHHHHHHHHhhcCC---------CccccHHHHhhcccee
Confidence 58999996 999999998877665 221 12333 25555655533221111 1115566777999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
|-+|+ .+.+++++.++-+. +.|.+|+-++--+|
T Consensus 65 VEaAS----------------~~Av~e~~~~~L~~-g~d~iV~SVGALad 97 (255)
T COG1712 65 VEAAS----------------PEAVREYVPKILKA-GIDVIVMSVGALAD 97 (255)
T ss_pred eeeCC----------------HHHHHHHhHHHHhc-CCCEEEEechhccC
Confidence 99988 57899999888875 58999888876554
No 136
>PRK08507 prephenate dehydrogenase; Validated
Probab=95.94 E-value=0.074 Score=52.39 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=40.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+||| .|.+|..++..|...+... .|.. + |++.+.++. +.++ .. +.... +.+.+.+||+|
T Consensus 1 m~I~iIG-~G~mG~sla~~l~~~g~~~---~v~~--~--d~~~~~~~~-~~~~-----g~---~~~~~-~~~~~~~aD~V 62 (275)
T PRK08507 1 MKIGIIG-LGLMGGSLGLALKEKGLIS---KVYG--Y--DHNELHLKK-ALEL-----GL---VDEIV-SFEELKKCDVI 62 (275)
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCCCC---EEEE--E--cCCHHHHHH-HHHC-----CC---CcccC-CHHHHhcCCEE
Confidence 4899999 5999999999999887521 2333 3 444444432 2221 11 11112 23335569999
Q ss_pred EEeCC
Q 013466 177 LLIGA 181 (442)
Q Consensus 177 Ii~ag 181 (442)
|++..
T Consensus 63 ilavp 67 (275)
T PRK08507 63 FLAIP 67 (275)
T ss_pred EEeCc
Confidence 99843
No 137
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.93 E-value=0.058 Score=50.96 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=27.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG 134 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d 134 (442)
..||+|+|+ |++|+.++..|+..|+- .+.|.|.|
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gvg----~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGIG----KLILVDFD 54 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCCC----EEEEECCC
Confidence 469999996 99999999999999962 25565443
No 138
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.92 E-value=0.098 Score=52.03 Aligned_cols=119 Identities=17% Similarity=0.143 Sum_probs=80.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc---------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP--------- 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~--------- 166 (442)
.+.|.|.||+.+||.++|+.|+..|.- +++ .-+..++++-++.++.....+ . ++.+...|
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~~-----l~l----var~~rrl~~v~~~l~~~~~~-~-~v~~~~~Dvs~~~~~~~ 80 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGAK-----LVL----VARRARRLERVAEELRKLGSL-E-KVLVLQLDVSDEESVKK 80 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCc-----eEE----eehhhhhHHHHHHHHHHhCCc-C-ccEEEeCccCCHHHHHH
Confidence 357889999999999999999998862 333 244556777777777755422 2 23221111
Q ss_pred -----ccccCCCcEEEEeCCcCCCCCC-------cHHhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCchhHH
Q 013466 167 -----YELFEDAEWALLIGAKPRGPGM-------ERAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~kpg~-------~r~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l 228 (442)
...+.+.|+.|..||..+ .+. .....++.| +-+.+...+.+.+. + +|.|++++....-+
T Consensus 81 ~~~~~~~~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r-~-~GhIVvisSiaG~~ 155 (282)
T KOG1205|consen 81 FVEWAIRHFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKR-N-DGHIVVISSIAGKM 155 (282)
T ss_pred HHHHHHHhcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhc-C-CCeEEEEecccccc
Confidence 245789999999999887 432 123355555 55667777888875 3 79999998766544
No 139
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.90 E-value=0.059 Score=55.61 Aligned_cols=73 Identities=12% Similarity=0.217 Sum_probs=42.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~~~eal~dAD 174 (442)
|+||+|+||+|.+|..+...|+...-|.. ..+.++.... ..+...++.+ ....+ ...+.+.++++|
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~---~~l~~~ss~~----sg~~~~~f~g------~~~~v~~~~~~~~~~~~D 67 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDL---IEPVFFSTSQ----AGGAAPSFGG------KEGTLQDAFDIDALKKLD 67 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCc---CcEEEecchh----hCCcccccCC------CcceEEecCChhHhcCCC
Confidence 57999999999999999986666665532 1233333221 1111111111 11222 223356789999
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+|+++++
T Consensus 68 ivf~a~~ 74 (369)
T PRK06598 68 IIITCQG 74 (369)
T ss_pred EEEECCC
Confidence 9999865
No 140
>PRK06545 prephenate dehydrogenase; Validated
Probab=95.89 E-value=0.1 Score=53.69 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=42.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.||+||| +|.||.+++..|...+. ++.++.+ +.+...+. .+ .. . ... -...++..+++++||+|
T Consensus 1 ~~I~iIG-~GliG~siA~~L~~~G~-----~v~i~~~--~~~~~~~~-~a--~~-~--~~~--~~~~~~~~~~~~~aDlV 64 (359)
T PRK06545 1 RTVLIVG-LGLIGGSLALAIKAAGP-----DVFIIGY--DPSAAQLA-RA--LG-F--GVI--DELAADLQRAAAEADLI 64 (359)
T ss_pred CeEEEEE-eCHHHHHHHHHHHhcCC-----CeEEEEe--CCCHHHHH-HH--hc-C--CCC--cccccCHHHHhcCCCEE
Confidence 3799999 59999999999999875 2555443 33222111 11 11 0 110 11234456778999999
Q ss_pred EEeCC
Q 013466 177 LLIGA 181 (442)
Q Consensus 177 Ii~ag 181 (442)
|++.-
T Consensus 65 ilavP 69 (359)
T PRK06545 65 VLAVP 69 (359)
T ss_pred EEeCC
Confidence 99843
No 141
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.84 E-value=0.051 Score=55.64 Aligned_cols=75 Identities=24% Similarity=0.341 Sum_probs=47.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
.+.+||+||||+|.+|..+...|.....|.- -.|.++.++++..+ ...+. . .+..+..-+.++++++
T Consensus 3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v---~~l~~~aS~~saGk----~~~~~----~--~~l~v~~~~~~~~~~~ 69 (347)
T PRK06728 3 EKGYHVAVVGATGAVGQKIIELLEKETKFNI---AEVTLLSSKRSAGK----TVQFK----G--REIIIQEAKINSFEGV 69 (347)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCc---ccEEEEECcccCCC----CeeeC----C--cceEEEeCCHHHhcCC
Confidence 3457999999999999999999996665532 12444444432222 11111 1 1344543456778999
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+|+++++
T Consensus 70 Divf~a~~ 77 (347)
T PRK06728 70 DIAFFSAG 77 (347)
T ss_pred CEEEECCC
Confidence 99999764
No 142
>PLN02650 dihydroflavonol-4-reductase
Probab=95.81 E-value=0.057 Score=54.68 Aligned_cols=116 Identities=10% Similarity=0.099 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ec------Cccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI------NPYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~------~~~e 168 (442)
.++|.|+||+|.||++++..|+..|. .|.+... +.+.+.... ++.... ....++.+ .. ...+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~-----~V~~~~r----~~~~~~~~~-~~~~~~-~~~~~~~~v~~Dl~d~~~~~~ 73 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY-----TVRATVR----DPANVKKVK-HLLDLP-GATTRLTLWKADLAVEGSFDD 73 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC-----EEEEEEc----CcchhHHHH-HHHhcc-CCCCceEEEEecCCChhhHHH
Confidence 45899999999999999999998774 2433222 222222221 111100 00001111 11 1235
Q ss_pred ccCCCcEEEEeCCcCCCCCCc-HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~-r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.++++|+||..|+.......+ ..+.+..|..-...+.+.+.+. +.-..|+.++-
T Consensus 74 ~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~~~~r~v~~SS 128 (351)
T PLN02650 74 AIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKA-KTVRRIVFTSS 128 (351)
T ss_pred HHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhc-CCceEEEEecc
Confidence 677899999988743211112 2356777888888888887764 22235666553
No 143
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=95.80 E-value=0.096 Score=52.45 Aligned_cols=116 Identities=15% Similarity=0.062 Sum_probs=63.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcc----cccC-
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY----ELFE- 171 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~----eal~- 171 (442)
|||.|+||+|.||++++..|+..+. .+.+...... ..........++.+.. . .-+..-..+. ++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~~~~~~-~~~~~~~~~~~~~~~~--~-~~~~~Dl~d~~~~~~~~~~ 71 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH-----DVVILDNLCN-SKRSVLPVIERLGGKH--P-TFVEGDIRNEALLTEILHD 71 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC-----eEEEEecCCC-chHhHHHHHHHhcCCC--c-eEEEccCCCHHHHHHHHhc
Confidence 5899999999999999999998764 2443211111 1111111111111110 0 0011111112 2333
Q ss_pred -CCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 172 -DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 172 -dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++|+||..++..... .....+.+..|......+.+.+.+. + -..++.++.
T Consensus 72 ~~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~v~~Ss 124 (338)
T PRK10675 72 HAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-N-VKNLIFSSS 124 (338)
T ss_pred CCCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHc-C-CCEEEEecc
Confidence 589999988754321 1234567788988888898888774 2 234555554
No 144
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.76 E-value=0.046 Score=54.27 Aligned_cols=65 Identities=11% Similarity=0.199 Sum_probs=42.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||+||| .|.+|..++..|+..+. ++.+ + |++.++.+.. ... .+....+..+.+++||+
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~~~g~-----~v~~--~--d~~~~~~~~~----~~~------g~~~~~~~~e~~~~~d~ 61 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLLKAGY-----SLVV--Y--DRNPEAVAEV----IAA------GAETASTAKAVAEQCDV 61 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHH----HHC------CCeecCCHHHHHhcCCE
Confidence 35899999 59999999999998763 2444 2 4454444322 111 12233445677899999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
||++.
T Consensus 62 vi~~v 66 (296)
T PRK11559 62 IITML 66 (296)
T ss_pred EEEeC
Confidence 99984
No 145
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=95.75 E-value=0.068 Score=53.06 Aligned_cols=115 Identities=15% Similarity=0.034 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-------cCccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-------~~~~e 168 (442)
.+||.|+||+|.||++++..|+..|. .+.....+ ..... ....+.... ....++.+. ....+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~-----~V~~~~r~----~~~~~-~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~ 72 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY-----TVKATVRD----PNDPK-KTEHLLALD-GAKERLHLFKANLLEEGSFDS 72 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC-----EEEEEEcC----CCchh-hHHHHHhcc-CCCCceEEEeccccCcchHHH
Confidence 36899999999999999999999875 24332222 11111 111111100 000112211 11235
Q ss_pred ccCCCcEEEEeCCcCCCCCCc-HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~-r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+++++|+||..++........ ..+.+..|+.-...+.+.+.+..+. ..++.++
T Consensus 73 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~~v~~S 126 (322)
T PLN02662 73 VVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSV-KRVVVTS 126 (322)
T ss_pred HHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEcc
Confidence 678999999988743211112 2356778888888888877663111 2455554
No 146
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.71 E-value=0.078 Score=52.20 Aligned_cols=70 Identities=24% Similarity=0.378 Sum_probs=43.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||+|||+ |.+|..++..|...+. +. +.+.+ .|++.++++..+.++ ......+..+.+.++|+
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~-~~-elv~v----~d~~~~~a~~~a~~~---------~~~~~~~~~ell~~~Dv 64 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRI-NA-ELYAF----YDRNLEKAENLASKT---------GAKACLSIDELVEDVDL 64 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCC-Ce-EEEEE----ECCCHHHHHHHHHhc---------CCeeECCHHHHhcCCCE
Confidence 479999995 9999999999887541 10 11222 255555554332211 12333444555689999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
|++++.
T Consensus 65 Vvi~a~ 70 (265)
T PRK13304 65 VVECAS 70 (265)
T ss_pred EEEcCC
Confidence 999864
No 147
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.70 E-value=0.05 Score=55.71 Aligned_cols=73 Identities=22% Similarity=0.308 Sum_probs=45.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+.+||+|+||+|.+|..++..|...+.- ...|..+...++..+. .+.. . .++.+..-+.+++.++|
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP----~~~l~~las~rsaGk~----~~~~----~--~~~~v~~~~~~~~~~~D 71 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFP----YSSLKMLASARSAGKK----VTFE----G--RDYTVEELTEDSFDGVD 71 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCC----cceEEEEEccCCCCCe----eeec----C--ceeEEEeCCHHHHcCCC
Confidence 3579999999999999999999875532 1344334334332211 1111 1 13344333456789999
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+||++.+
T Consensus 72 ~vf~a~p 78 (344)
T PLN02383 72 IALFSAG 78 (344)
T ss_pred EEEECCC
Confidence 9999865
No 148
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.70 E-value=0.042 Score=54.86 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=44.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|.||+||| .|.+|..++..|+..+. .+.++ |++.++++.... . ......+..+++++||+
T Consensus 1 m~~Ig~IG-lG~mG~~mA~~l~~~G~-----~V~v~----d~~~~~~~~~~~----~------g~~~~~s~~~~~~~aDv 60 (296)
T PRK15461 1 MAAIAFIG-LGQMGSPMASNLLKQGH-----QLQVF----DVNPQAVDALVD----K------GATPAASPAQAAAGAEF 60 (296)
T ss_pred CCeEEEEe-eCHHHHHHHHHHHHCCC-----eEEEE----cCCHHHHHHHHH----c------CCcccCCHHHHHhcCCE
Confidence 35899999 59999999999998874 25443 455555543221 1 11233455678899999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
||++.
T Consensus 61 Vi~~v 65 (296)
T PRK15461 61 VITML 65 (296)
T ss_pred EEEec
Confidence 99873
No 149
>PLN02214 cinnamoyl-CoA reductase
Probab=95.69 E-value=0.069 Score=54.21 Aligned_cols=109 Identities=12% Similarity=0.076 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHH-HHHHHHhcccCCCcccEEEe-c------Ccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIG-I------NPY 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~-g~a~DL~~~~~~~~~~v~i~-~------~~~ 167 (442)
+++|.|+||+|.||++++..|+..|. .|.... ++.+... .....+.... .++.+. . ...
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~-----~V~~~~----r~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~d~~~~~ 76 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY-----TVKGTV----RNPDDPKNTHLRELEGGK----ERLILCKADLQDYEALK 76 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-----EEEEEe----CCchhhhHHHHHHhhCCC----CcEEEEecCcCChHHHH
Confidence 56899999999999999999998874 243322 2222211 1111121110 112211 1 124
Q ss_pred cccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++++++|+||.+++... ....+.+..|..-...+.+.+.+. +.. .|+++|
T Consensus 77 ~~~~~~d~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~-~v~-r~V~~S 126 (342)
T PLN02214 77 AAIDGCDGVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEA-KVK-RVVITS 126 (342)
T ss_pred HHHhcCCEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhc-CCC-EEEEec
Confidence 56789999999987432 234556778888888888887764 222 455444
No 150
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.68 E-value=0.068 Score=54.58 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=44.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
.+|+||+|+||+|.+|..++..|...+. . ...|..+-..... |.-..+.. ....+..-+.++++++
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~h-P---~~~l~~v~s~~~a----G~~l~~~~------~~l~~~~~~~~~~~~v 67 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDF-P---VGTLHLLASSESA----GHSVPFAG------KNLRVREVDSFDFSQV 67 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCC-C---ceEEEEEECcccC----CCeeccCC------cceEEeeCChHHhcCC
Confidence 4568999999999999999999996553 1 1344444322111 11111111 1233332233457899
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+|+++.+
T Consensus 68 D~vFla~p 75 (336)
T PRK05671 68 QLAFFAAG 75 (336)
T ss_pred CEEEEcCC
Confidence 99999754
No 151
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.65 E-value=0.029 Score=51.75 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=25.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG 134 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d 134 (442)
||.|+|+ |++|+.++..|+..|+- .+.|.|.|
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg----~i~lvD~D 32 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVG----NLKLVDFD 32 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCC----eEEEEeCC
Confidence 6899995 99999999999999862 26665544
No 152
>PRK08267 short chain dehydrogenase; Provisional
Probab=95.65 E-value=0.042 Score=52.91 Aligned_cols=117 Identities=18% Similarity=0.078 Sum_probs=62.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec--Ccccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYEL---- 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~--~~~ea---- 169 (442)
|++|.|+||+|+||..++..|+..|. .+.+. +++.+.++....++...... ...+.++. +..+.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGW-----RVGAY----DINEAGLAALAAELGAGNAW-TGALDVTDRAAWDAALADF 70 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHHhcCCceE-EEEecCCCHHHHHHHHHHH
Confidence 35799999999999999999999874 24442 45555555444443311100 00111110 00111
Q ss_pred ----cCCCcEEEEeCCcCCCCCC---c---HHhHHHHHHHHHHHH----HHHHHhhhCCCeEEEEeCCc
Q 013466 170 ----FEDAEWALLIGAKPRGPGM---E---RAGLLDINGQIFAEQ----GKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 170 ----l~dADiVIi~ag~~~kpg~---~---r~dll~~N~~Ii~~i----~~~I~~~a~p~a~vivvtNP 224 (442)
....|+||.++|....... + -...+..|..-...+ .+.+++ .+.+.+++++-.
T Consensus 71 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~~~iv~isS~ 137 (260)
T PRK08267 71 AAATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKA--TPGARVINTSSA 137 (260)
T ss_pred HHHcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh--CCCCEEEEeCch
Confidence 3356999999886532211 1 233455665533333 333443 245666666643
No 153
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=95.63 E-value=0.014 Score=58.16 Aligned_cols=122 Identities=22% Similarity=0.195 Sum_probs=67.3
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC-C-CcccEEEecC-------cccc
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-P-LLREVKIGIN-------PYEL 169 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~-~-~~~~v~i~~~-------~~ea 169 (442)
|.|.||+|.||+.++..|+..+.. .|.+ + |+++..+..+..+|..... + ....+....+ ....
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~----~lil--~--d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~ 72 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPK----KLIL--F--DRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRI 72 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-S----EEEE--E--ES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCC----eEEE--e--CCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHH
Confidence 679999999999999999987641 2444 3 6667788877777742210 1 1001111111 2456
Q ss_pred cC--CCcEEEEeCCcCCCCCCc--HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC----CchhHHH
Q 013466 170 FE--DAEWALLIGAKPRGPGME--RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG----NPCNTNA 229 (442)
Q Consensus 170 l~--dADiVIi~ag~~~kpg~~--r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt----NPvd~lt 229 (442)
++ +.|+|+.+|..-.-|-++ -.+.+..|+-=-+.+++...++ +-+-.|.+-| ||.++|.
T Consensus 73 ~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~-~v~~~v~ISTDKAv~PtnvmG 139 (293)
T PF02719_consen 73 FEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEH-GVERFVFISTDKAVNPTNVMG 139 (293)
T ss_dssp TT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHT-T-SEEEEEEECGCSS--SHHH
T ss_pred HhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEccccccCCCCcHHH
Confidence 77 999999998754333333 3556777766667777777775 3555555543 6666653
No 154
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.62 E-value=0.057 Score=51.85 Aligned_cols=79 Identities=22% Similarity=0.109 Sum_probs=47.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v 160 (442)
..||.|+|+ |++|+.++..|+..|+- .+.|.|.|. |....+++..+..|.... |.. ++
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gvg----~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~-~i 93 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGVG----KLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN-PDV-EI 93 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCC----EEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC-CCC-EE
Confidence 359999995 99999999999999962 255543221 222235555555554332 211 22
Q ss_pred EEec-----C-cccccCCCcEEEEeCC
Q 013466 161 KIGI-----N-PYELFEDAEWALLIGA 181 (442)
Q Consensus 161 ~i~~-----~-~~eal~dADiVIi~ag 181 (442)
.... . ..+.++++|+||.+..
T Consensus 94 ~~~~~~i~~~~~~~~~~~~DvVi~~~d 120 (228)
T cd00757 94 EAYNERLDAENAEELIAGYDLVLDCTD 120 (228)
T ss_pred EEecceeCHHHHHHHHhCCCEEEEcCC
Confidence 2211 1 1245789999998855
No 155
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.62 E-value=0.068 Score=47.33 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=66.9
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc-ccE--EEecCcc-cccCCCc
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REV--KIGINPY-ELFEDAE 174 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~-~~v--~i~~~~~-eal~dAD 174 (442)
|+|+|| |.||..++..|.+.+. ++.+. .+.. .++....+=-....... ..+ ......+ +.....|
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~-----~V~l~----~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 69 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH-----DVTLV----SRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYD 69 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC-----EEEEE----ESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTES
T ss_pred CEEECc-CHHHHHHHHHHHHCCC-----ceEEE----Eccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCc
Confidence 789995 9999999999998664 36663 3333 33332111000100110 011 1112222 5788999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccch
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR 249 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~ 249 (442)
+||++.... -..+..+.++.+..+++.|+.+-|=.+..-.+. +..+ +++++++.+.
T Consensus 70 ~viv~vKa~----------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~-~~~~--~~~v~~g~~~ 125 (151)
T PF02558_consen 70 LVIVAVKAY----------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLA-EYFP--RPRVLGGVTT 125 (151)
T ss_dssp EEEE-SSGG----------------GHHHHHHHHCTGEETTEEEEEESSSSSHHHHHH-CHST--GSGEEEEEEE
T ss_pred EEEEEeccc----------------chHHHHHHHhhccCCCcEEEEEeCCCCcHHHHH-HHcC--CCcEEEEEEe
Confidence 999985421 133455556677668889999999776654333 2221 2366655544
No 156
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.54 E-value=0.04 Score=48.26 Aligned_cols=78 Identities=22% Similarity=0.192 Sum_probs=47.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREVK 161 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v~ 161 (442)
.||+|+|+ |.+|+.++..|+..|+ + .+.|.|.|. |....+++..+..|.... |.. +++
T Consensus 3 ~~v~iiG~-G~vGs~va~~L~~~Gv-~---~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n-p~~-~v~ 75 (135)
T PF00899_consen 3 KRVLIIGA-GGVGSEVAKNLARSGV-G---KITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN-PDV-EVE 75 (135)
T ss_dssp -EEEEEST-SHHHHHHHHHHHHHTT-S---EEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS-TTS-EEE
T ss_pred CEEEEECc-CHHHHHHHHHHHHhCC-C---ceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhc-Cce-eee
Confidence 58999995 9999999999999997 2 355544321 111235555555555433 322 333
Q ss_pred EecCc------ccccCCCcEEEEeCC
Q 013466 162 IGINP------YELFEDAEWALLIGA 181 (442)
Q Consensus 162 i~~~~------~eal~dADiVIi~ag 181 (442)
..... .+.++++|+||.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~d~vi~~~d 101 (135)
T PF00899_consen 76 AIPEKIDEENIEELLKDYDIVIDCVD 101 (135)
T ss_dssp EEESHCSHHHHHHHHHTSSEEEEESS
T ss_pred eeecccccccccccccCCCEEEEecC
Confidence 32222 355779999998744
No 157
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.54 E-value=0.053 Score=54.77 Aligned_cols=54 Identities=7% Similarity=-0.033 Sum_probs=38.7
Q ss_pred cEEEecC--cccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHH
Q 013466 159 EVKIGIN--PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (442)
Q Consensus 159 ~v~i~~~--~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l 228 (442)
+++++++ .++++++||+||.+. .+|.++-+++-..|.+++.|++++ .||.....
T Consensus 64 ~i~~~~~~~~~~a~~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~ 119 (314)
T PRK08269 64 RIAVVARDGAADALADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFL 119 (314)
T ss_pred CeEeecCcchHHHhccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCC
Confidence 5666654 568899999999883 235566777777788888778877 77765433
No 158
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.52 E-value=0.032 Score=56.40 Aligned_cols=107 Identities=10% Similarity=0.100 Sum_probs=61.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC---c----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN---P---- 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~---~---- 166 (442)
||||.|+||+|.||++++..|+.. +. .|.. + ++..+... ++... + .+.+. .| +
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~-----~V~~--~--~r~~~~~~----~~~~~--~---~~~~~~~Dl~~~~~~~ 62 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW-----EVYG--M--DMQTDRLG----DLVNH--P---RMHFFEGDITINKEWI 62 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC-----eEEE--E--eCcHHHHH----HhccC--C---CeEEEeCCCCCCHHHH
Confidence 568999999999999999999875 32 2433 2 33222211 11111 0 12211 11 1
Q ss_pred ccccCCCcEEEEeCCcCC--CCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 YELFEDAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~--kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.++++|+||.+++... ....+-......|..-...+.+.+.+. + ..++.++.
T Consensus 63 ~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~-~--~~~v~~SS 118 (347)
T PRK11908 63 EYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G--KHLVFPST 118 (347)
T ss_pred HHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhc-C--CeEEEEec
Confidence 235689999998876432 112233344566777777778777763 2 46665554
No 159
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.43 E-value=0.067 Score=47.46 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=48.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|+|+|+ |.+|..++..|...+ .. .+.+. +++.++++..+.++.... ... ...+..+.++++|+
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~---~v~v~----~r~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~Dv 84 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELG-AA---KIVIV----NRTLEKAKALAERFGELG----IAI-AYLDLEELLAEADL 84 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC-CC---EEEEE----cCCHHHHHHHHHHHhhcc----cce-eecchhhccccCCE
Confidence 568999996 999999999999876 21 25552 555666665555543210 011 12345566899999
Q ss_pred EEEeCCcC
Q 013466 176 ALLIGAKP 183 (442)
Q Consensus 176 VIi~ag~~ 183 (442)
||++...+
T Consensus 85 vi~~~~~~ 92 (155)
T cd01065 85 IINTTPVG 92 (155)
T ss_pred EEeCcCCC
Confidence 99986543
No 160
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=95.42 E-value=0.033 Score=54.19 Aligned_cols=96 Identities=19% Similarity=0.209 Sum_probs=59.8
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEEE
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALL 178 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIi 178 (442)
|.|+||+|.||++++..|+..+. .|... +++.........+ ... . . ......++++++|+||.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~~~~~--~~~-~----~-~~~~~~~~~~~~D~Vvh 63 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH-----EVTIL----TRSPPAGANTKWE--GYK-P----W-APLAESEALEGADAVIN 63 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC-----EEEEE----eCCCCCCCcccce--eee-c----c-cccchhhhcCCCCEEEE
Confidence 57999999999999999998763 24332 2222221110000 000 0 0 01234578899999999
Q ss_pred eCCcCCCCC--C--cHHhHHHHHHHHHHHHHHHHHhh
Q 013466 179 IGAKPRGPG--M--ERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 179 ~ag~~~kpg--~--~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
.++.+...+ . ....+...|+...+.+.+.+.+.
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~ 100 (292)
T TIGR01777 64 LAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAA 100 (292)
T ss_pred CCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 988654322 1 23456677888899999988875
No 161
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.41 E-value=0.055 Score=47.02 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=42.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|+|++|.+|..++..+....- +.|.-. +++...... ..|+.+...-....+.++.+..+.+..+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~------~~lv~~-v~~~~~~~~--g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPG------FELVGA-VDRKPSAKV--GKDVGELAGIGPLGVPVTDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTT------EEEEEE-EETTTSTTT--TSBCHHHCTSST-SSBEBS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCC------cEEEEE-EecCCcccc--cchhhhhhCcCCcccccchhHHHhcccCCEE
Confidence 6999999889999999999998543 222211 243331111 1222222100112456667778888899998
Q ss_pred EEe
Q 013466 177 LLI 179 (442)
Q Consensus 177 Ii~ 179 (442)
|-.
T Consensus 72 IDf 74 (124)
T PF01113_consen 72 IDF 74 (124)
T ss_dssp EEE
T ss_pred EEc
Confidence 865
No 162
>PRK07102 short chain dehydrogenase; Provisional
Probab=95.39 E-value=0.15 Score=48.42 Aligned_cols=46 Identities=30% Similarity=0.350 Sum_probs=32.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
|++|.|+||+|++|..++..|+..|. .+.+. +++.+.++....++.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~-----~Vi~~----~r~~~~~~~~~~~~~ 46 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA-----RLYLA----ARDVERLERLADDLR 46 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 46899999999999999999998874 24442 444455555555543
No 163
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=95.39 E-value=0.1 Score=52.00 Aligned_cols=116 Identities=13% Similarity=0.029 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-c------Cccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I------NPYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~------~~~e 168 (442)
.++|.|+||+|.||++++..|+..|. .+.+...+. +...... .+.... ....++.+. . ...+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-----~V~~~~r~~----~~~~~~~-~~~~~~-~~~~~~~~~~~D~~d~~~~~~ 73 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY-----TINATVRDP----KDRKKTD-HLLALD-GAKERLKLFKADLLDEGSFEL 73 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-----EEEEEEcCC----cchhhHH-HHHhcc-CCCCceEEEeCCCCCchHHHH
Confidence 46899999999999999999998874 244422221 2221111 111000 000112211 1 1134
Q ss_pred ccCCCcEEEEeCCcCCCC-CC-cHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFEDAEWALLIGAKPRGP-GM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~dADiVIi~ag~~~kp-g~-~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+++.|+||..+|..... .. .-...+..|..-...+.+.+.+.. ....|++++-
T Consensus 74 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~-~~~~iv~~SS 129 (325)
T PLN02989 74 AIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVS-SVKRVILTSS 129 (325)
T ss_pred HHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcC-CceEEEEecc
Confidence 567899999998853211 11 123456778877778887776642 2245555553
No 164
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.38 E-value=0.044 Score=54.26 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=64.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe--cCcccccCCCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~--~~~~eal~dAD 174 (442)
+||.|+||+|.+|++++..|+..+. .+... +++.+... ++.+.... .....+. ....+.++++|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~----~~~~~~~~-~~~~D~~~~~~l~~~~~~~d 66 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE-----EVRVL----VRPTSDRR----NLEGLDVE-IVEGDLRDPASLRKAVAGCR 66 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC-----EEEEE----EecCcccc----ccccCCce-EEEeeCCCHHHHHHHHhCCC
Confidence 4899999999999999999998874 24432 33322221 11111000 0000111 11235677899
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+||..++.......+.......|......+++.+.+. + -..++.++.
T Consensus 67 ~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~v~~SS 113 (328)
T TIGR03466 67 ALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEA-G-VERVVYTSS 113 (328)
T ss_pred EEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHh-C-CCeEEEEec
Confidence 9999876432222344566778888888888877764 2 225555554
No 165
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=95.32 E-value=0.05 Score=60.37 Aligned_cols=109 Identities=13% Similarity=0.106 Sum_probs=65.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC------
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------ 165 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~------ 165 (442)
++++||.|+||+|.||++++..|... +. .|.. + +++..... ++... + ++.+. .|
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-----~V~~--l--~r~~~~~~----~~~~~--~---~~~~~~gDl~d~~~ 374 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNY-----EVYG--L--DIGSDAIS----RFLGH--P---RFHFVEGDISIHSE 374 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCc-----EEEE--E--eCCchhhh----hhcCC--C---ceEEEeccccCcHH
Confidence 34679999999999999999999974 43 1332 1 22221111 11100 0 11111 11
Q ss_pred -cccccCCCcEEEEeCCcCC--CCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 166 -PYELFEDAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 166 -~~eal~dADiVIi~ag~~~--kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
..++++++|+||..|+... .......+.+..|+.-...+.+++.+. + -.++.++.
T Consensus 375 ~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~-~--~~~V~~SS 432 (660)
T PRK08125 375 WIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKY-N--KRIIFPST 432 (660)
T ss_pred HHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhc-C--CeEEEEcc
Confidence 1245789999999877432 222344567788888888888888875 3 35555554
No 166
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=95.31 E-value=0.086 Score=53.82 Aligned_cols=73 Identities=25% Similarity=0.206 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+.+||+|+||+|.+|..+...|.....- ...|..+..+.+..+.- .+. . ....+..-+..++.++|
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP----~~~l~~laS~~saG~~~----~~~----~--~~~~v~~~~~~~~~~~D 68 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFP----VGELYALASEESAGETL----RFG----G--KSVTVQDAAEFDWSQAQ 68 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCC----ceEEEEEEccCcCCceE----EEC----C--cceEEEeCchhhccCCC
Confidence 4579999999999999999999985331 13444444443222111 111 1 13444322344568999
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+|+++.+
T Consensus 69 vvf~a~p 75 (336)
T PRK08040 69 LAFFVAG 75 (336)
T ss_pred EEEECCC
Confidence 9999764
No 167
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=95.31 E-value=0.11 Score=50.43 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=76.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec---------Ccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NPY 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~---------~~~ 167 (442)
+-|.|.||++++|.+++..|+..|. ++.| ..+..++|+.++.++.+.. .+...+.++- ...
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~-----~vvl----~aRR~drL~~la~~~~~~~-~~~~~~DVtD~~~~~~~i~~~~ 76 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA-----KVVL----AARREERLEALADEIGAGA-ALALALDVTDRAAVEAAIEALP 76 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC-----eEEE----EeccHHHHHHHHHhhccCc-eEEEeeccCCHHHHHHHHHHHH
Confidence 3577999999999999999999886 3555 4788899999999998411 0101122211 135
Q ss_pred cccCCCcEEEEeCCcCCCCCC------cHHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ELFEDAEWALLIGAKPRGPGM------ERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kpg~------~r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..||.-+..-. +=.++++.|++ .++.+.+.+.+. ..+.||+++-
T Consensus 77 ~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r--~~G~IiN~~S 140 (246)
T COG4221 77 EEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER--KSGHIINLGS 140 (246)
T ss_pred HhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc--CCceEEEecc
Confidence 668899999999886442111 12346677765 345555666663 5778888885
No 168
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=95.30 E-value=0.12 Score=51.13 Aligned_cols=108 Identities=18% Similarity=0.160 Sum_probs=60.5
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhH-HHHHHHHhcccCCCcccEEEecC-ccc-----ccC
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL-EGVAMELEDSLFPLLREVKIGIN-PYE-----LFE 171 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l-~g~a~DL~~~~~~~~~~v~i~~~-~~e-----al~ 171 (442)
|.|+||+|.||++++..|+..|. +.+.+. +........ .-...|+.|.. . . .+ ..+ .+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~----~~v~~~--~~~~~~~~~~~~~~~~~~d~~-~------~-~~~~~~~~~~~~~~ 67 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI----TDILVV--DNLKDGTKFVNLVDLDIADYM-D------K-EDFLAQIMAGDDFG 67 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC----ceEEEe--cCCCcchHHHhhhhhhhhhhh-h------H-HHHHHHHhcccccC
Confidence 68999999999999999998774 124332 211100000 00112222211 0 0 00 011 223
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++|+||.+|+.+..+..+....+..|......+.+.+.+. + ..++.++-
T Consensus 68 ~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~-~--~~~i~~SS 116 (308)
T PRK11150 68 DIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-E--IPFLYASS 116 (308)
T ss_pred CccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHc-C--CcEEEEcc
Confidence 6899999887543333344456788888888888887774 2 35655553
No 169
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.24 E-value=0.27 Score=49.82 Aligned_cols=113 Identities=12% Similarity=0.017 Sum_probs=60.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC------ccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------PYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~------~~e 168 (442)
.+||.|+||+|.||++++..|+..|. .|.+. +++.........++.. ..++.+. .| ..+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~-----~V~~~----~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~ 75 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGY-----TVHAT----LRDPAKSLHLLSKWKE-----GDRLRLFRADLQEEGSFDE 75 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCChHHHHHHHHhhcc-----CCeEEEEECCCCCHHHHHH
Confidence 46899999999999999999998774 24432 2222222222222211 0122221 11 134
Q ss_pred ccCCCcEEEEeCCcCCCC---C-CcHH-----hHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFEDAEWALLIGAKPRGP---G-MERA-----GLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~dADiVIi~ag~~~kp---g-~~r~-----dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++++.|+||..|+...-. . .+-. ..+..|..-...+.+.+.+. ..-..|++++-
T Consensus 76 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~-~~~~~~v~~SS 138 (353)
T PLN02896 76 AVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKS-KTVKRVVFTSS 138 (353)
T ss_pred HHcCCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhc-CCccEEEEEec
Confidence 567899999988754211 1 1111 22333445556666666553 11235555553
No 170
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=95.23 E-value=0.12 Score=52.35 Aligned_cols=131 Identities=12% Similarity=0.085 Sum_probs=77.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCC-C-CCceEEEeccccchhh--hHHHHHHHHhcccCC------CcccEEE
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLG-P-DQPIALKLLGSERSLQ--ALEGVAMELEDSLFP------LLREVKI 162 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~-~-~~~I~L~l~d~d~~~~--~l~g~a~DL~~~~~~------~~~~v~i 162 (442)
.+.+.||+||| +|+=|++++..+...-.-. . +..+....++...+.+ ++..+... .|.... +..++..
T Consensus 18 ~~~~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~-~heN~KYlpg~~lP~NvvA 95 (372)
T KOG2711|consen 18 ERDPLKVCIVG-SGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINS-RHENVKYLPGIKLPENVVA 95 (372)
T ss_pred hcCceEEEEEc-cChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhcc-ccccccccCCccCCCCeEe
Confidence 34568999999 5999999998877543211 1 2356666665444332 22222111 111111 1246777
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc---------hhHHHHHHH
Q 013466 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP---------CNTNALICL 233 (442)
Q Consensus 163 ~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP---------vd~lt~~~~ 233 (442)
.+|..++++|||++|+..- -+.+.+++++|..+-.|++..|-.+.= +..++.++.
T Consensus 96 v~dl~ea~~dADilvf~vP----------------hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~ 159 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVP----------------HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIH 159 (372)
T ss_pred cchHHHHhccCCEEEEeCC----------------hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHH
Confidence 8889999999999999732 255667777777776666666544432 244555555
Q ss_pred HHCCCCCcc
Q 013466 234 KNAPSIPAK 242 (442)
Q Consensus 234 k~s~~~p~k 242 (442)
+.. ++|-.
T Consensus 160 ~~l-gI~~~ 167 (372)
T KOG2711|consen 160 RAL-GIPCS 167 (372)
T ss_pred HHh-CCCce
Confidence 554 34433
No 171
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.22 E-value=0.18 Score=44.43 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=45.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc---------------ccchhhhHHHHHHHHhcccCCCcccEEE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG---------------SERSLQALEGVAMELEDSLFPLLREVKI 162 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d---------------~d~~~~~l~g~a~DL~~~~~~~~~~v~i 162 (442)
||.|+|+ |++|+.++..|+..|+ + .+.|.|.| .+....+++..+..++... |. .++..
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv-~---~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~-v~i~~ 73 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV-G---KITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PG-VNVTA 73 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC-C---EEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CC-cEEEE
Confidence 6899995 9999999999999997 2 25554332 1122234444444444332 21 12222
Q ss_pred ec---Cc---ccccCCCcEEEEeCC
Q 013466 163 GI---NP---YELFEDAEWALLIGA 181 (442)
Q Consensus 163 ~~---~~---~eal~dADiVIi~ag 181 (442)
.. .. .+.+++.|+||.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~diVi~~~d 98 (143)
T cd01483 74 VPEGISEDNLDDFLDGVDLVIDAID 98 (143)
T ss_pred EeeecChhhHHHHhcCCCEEEECCC
Confidence 11 11 355889999998844
No 172
>PLN02583 cinnamoyl-CoA reductase
Probab=95.18 E-value=0.14 Score=50.79 Aligned_cols=116 Identities=11% Similarity=0.095 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC------ccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------PYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~------~~e 168 (442)
..+|.|+||+|.||++++..|+..|. .+.+... +...........++.... .++.. ..| ..+
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~-----~V~~~~R--~~~~~~~~~~~~~l~~~~----~~~~~~~~Dl~d~~~~~~ 74 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY-----TVHAAVQ--KNGETEIEKEIRGLSCEE----ERLKVFDVDPLDYHSILD 74 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-----EEEEEEc--CchhhhHHHHHHhcccCC----CceEEEEecCCCHHHHHH
Confidence 35799999999999999999999875 2433211 111122222222221100 11211 111 246
Q ss_pred ccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+++++|.|+..++.+........+++..|..-...+.+.+.+..+ -..|++++-
T Consensus 75 ~l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~-v~riV~~SS 128 (297)
T PLN02583 75 ALKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDT-IEKVVFTSS 128 (297)
T ss_pred HHcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCC-ccEEEEecc
Confidence 788999988655433211112345678888888888887776421 134555543
No 173
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.17 E-value=0.07 Score=51.09 Aligned_cols=113 Identities=12% Similarity=0.143 Sum_probs=61.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc----------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP---------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~---------- 166 (442)
|+|.|+||+|++|..++..|+..|. .+.+. +++.+.++....++.... .-+..-..+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~----~~~~~Dl~~~~~i~~~~~~ 67 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH-----KVIAT----GRRQERLQELKDELGDNL----YIAQLDVRNRAAIEEMLAS 67 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHhccce----EEEEecCCCHHHHHHHHHH
Confidence 5799999999999999999998774 24442 455555554433221100 001110111
Q ss_pred -ccccCCCcEEEEeCCcCC--CCC--CcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 -YELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 -~eal~dADiVIi~ag~~~--kpg--~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+.+.|+||..+|... .|- .+. .+.+..|..- .+.+.+.+.+. ..+.+++++..
T Consensus 68 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~isS~ 135 (248)
T PRK10538 68 LPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER--NHGHIINIGST 135 (248)
T ss_pred HHHHcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEECCc
Confidence 122357999999887532 221 122 2234555443 44444555442 34567777653
No 174
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.17 E-value=0.26 Score=53.14 Aligned_cols=124 Identities=19% Similarity=0.170 Sum_probs=82.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC-------cc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-------PY 167 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~-------~~ 167 (442)
+.+.|-|.||+|.+|+.+...++..+. ..|.+ + ++++-++..+.++|.+.. +. .+.+...+ -.
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p----~~i~l--~--~~~E~~~~~i~~el~~~~-~~-~~~~~~igdVrD~~~~~ 318 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNP----KEIIL--F--SRDEYKLYLIDMELREKF-PE-LKLRFYIGDVRDRDRVE 318 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcCC----CEEEE--e--cCchHHHHHHHHHHHhhC-CC-cceEEEecccccHHHHH
Confidence 346899999999999999999998764 23544 3 556677777778887642 21 12222222 25
Q ss_pred cccCC--CcEEEEeCCcCCCCCCcH--HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC----CchhHHH
Q 013466 168 ELFED--AEWALLIGAKPRGPGMER--AGLLDINGQIFAEQGKALNAVASRNVKVIVVG----NPCNTNA 229 (442)
Q Consensus 168 eal~d--ADiVIi~ag~~~kpg~~r--~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt----NPvd~lt 229 (442)
.++++ .|+|+.+|..-.-|-++. .+-...|+-=-.+++++..+. +-...|++-| ||.|+|.
T Consensus 319 ~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~-~V~~~V~iSTDKAV~PtNvmG 387 (588)
T COG1086 319 RAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKN-GVKKFVLISTDKAVNPTNVMG 387 (588)
T ss_pred HHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHh-CCCEEEEEecCcccCCchHhh
Confidence 67888 999999998777776654 455666665566677766664 3455555544 7777664
No 175
>PLN02240 UDP-glucose 4-epimerase
Probab=95.14 E-value=0.31 Score=49.04 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-c--Ccc----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I--NPY----E 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~--~~~----e 168 (442)
.+||.|+||+|.+|++++..|+..+. .|.+............. ...++.... . .++... . .+. +
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-----~V~~~~~~~~~~~~~~~-~~~~~~~~~-~--~~~~~~~~D~~~~~~l~~ 75 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGY-----KVVVIDNLDNSSEEALR-RVKELAGDL-G--DNLVFHKVDLRDKEALEK 75 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEEeCCCcchHHHHH-HHHHhhccc-C--ccceEEecCcCCHHHHHH
Confidence 46999999999999999999998773 24332110010111111 111111000 0 111111 1 112 2
Q ss_pred ccC--CCcEEEEeCCcCCC-CC-CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFE--DAEWALLIGAKPRG-PG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~--dADiVIi~ag~~~k-pg-~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.++ +.|+||.+++.... .. ......+..|......+.+.+.+. +. ..++.++.
T Consensus 76 ~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~~v~~Ss 132 (352)
T PLN02240 76 VFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKH-GC-KKLVFSSS 132 (352)
T ss_pred HHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEEcc
Confidence 233 68999998875421 11 234556788888888888877663 22 24555654
No 176
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.12 E-value=0.29 Score=46.40 Aligned_cols=46 Identities=26% Similarity=0.281 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
..+|.|+||+|.+|..++..|+..|. .+.+ .+++.+.+.....++.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 50 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA-----RVVV----TDRNEEAAERVAAEIL 50 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHh
Confidence 46899999999999999999998874 2444 2555555554544444
No 177
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.11 E-value=0.11 Score=52.91 Aligned_cols=72 Identities=26% Similarity=0.297 Sum_probs=42.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||+|+||+|.+|..++..|...+.- .+.|..+-.+.+.. ...++.. ..+.+..-+..+++++|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp----~~~l~~l~s~~~~g----~~l~~~g------~~i~v~d~~~~~~~~vDv 66 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFP----VDKLRLLASARSAG----KELSFKG------KELKVEDLTTFDFSGVDI 66 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCC----cceEEEEEccccCC----CeeeeCC------ceeEEeeCCHHHHcCCCE
Confidence 479999999999999999999885431 12232232222211 1111111 123333223356789999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
||++.|
T Consensus 67 Vf~A~g 72 (334)
T PRK14874 67 ALFSAG 72 (334)
T ss_pred EEECCC
Confidence 999866
No 178
>PRK06196 oxidoreductase; Provisional
Probab=95.11 E-value=0.29 Score=48.90 Aligned_cols=114 Identities=10% Similarity=0.022 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec---------Cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~---------~~ 166 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.++++....++.... .+ ...++. ..
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~-----~Vv~~----~R~~~~~~~~~~~l~~v~-~~--~~Dl~d~~~v~~~~~~~ 93 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA-----HVIVP----ARRPDVAREALAGIDGVE-VV--MLDLADLESVRAFAERF 93 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhhhCe-EE--EccCCCHHHHHHHHHHH
Confidence 35899999999999999999999874 24442 445555554444443211 00 111110 00
Q ss_pred ccccCCCcEEEEeCCcCCCCCC---c-HHhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 YELFEDAEWALLIGAKPRGPGM---E-RAGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~kpg~---~-r~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+...|+||..+|....+.. + -...+..|. .+.+.+.+.+.+. ..+.|++++-
T Consensus 94 ~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~--~~~~iV~vSS 156 (315)
T PRK06196 94 LDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAG--AGARVVALSS 156 (315)
T ss_pred HhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCeEEEECC
Confidence 1223578999999885432211 1 122344443 3455666666653 3467777764
No 179
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.10 E-value=0.26 Score=46.72 Aligned_cols=75 Identities=13% Similarity=0.030 Sum_probs=47.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e---- 168 (442)
.++|.|+||+|+||..++..|+..|. .+.+. +++.+.+.....++.... .++.+. .| +.+
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 73 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA-----TVAFN----DGLAAEARELAAALEAAG----GRAHAIAADLADPASVQR 73 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 36899999999999999999998774 24442 445555555555554221 122221 11 121
Q ss_pred -------ccCCCcEEEEeCCcC
Q 013466 169 -------LFEDAEWALLIGAKP 183 (442)
Q Consensus 169 -------al~dADiVIi~ag~~ 183 (442)
.+...|+||..+|..
T Consensus 74 ~~~~~~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 74 FFDAAAAALGGLDGLVNNAGIT 95 (250)
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 125789999988754
No 180
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.10 E-value=0.071 Score=54.03 Aligned_cols=73 Identities=25% Similarity=0.282 Sum_probs=44.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec--CcccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~--~~~eal~dA 173 (442)
++||+|+||+|.||+.+...|.... |.- ..+.++-+.++..+ ...++..- ...+.. -+..+++++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~-f~~---~~~~~~AS~rSaG~---~~~~f~~~------~~~v~~~~~~~~~~~~~ 67 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERH-FPF---EELVLLASARSAGK---KYIEFGGK------SIGVPEDAADEFVFSDV 67 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcC-CCc---ceEEEEecccccCC---ccccccCc------cccCccccccccccccC
Confidence 4699999999999999999999853 221 12444444443221 11222211 112212 356778899
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+|++++|
T Consensus 68 Divf~~ag 75 (334)
T COG0136 68 DIVFFAAG 75 (334)
T ss_pred CEEEEeCc
Confidence 99999876
No 181
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=95.09 E-value=0.11 Score=52.76 Aligned_cols=113 Identities=12% Similarity=0.023 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c----cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P----YE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~----~e 168 (442)
.++|.|+||+|.||++++..|+..|. .|... +++..........+... . ++. +..| + .+
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~--~---~~~~~~~Dl~~~~~~~~ 69 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA-----EVYGY----SLDPPTSPNLFELLNLA--K---KIEDHFGDIRDAAKLRK 69 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC-----EEEEE----eCCCccchhHHHHHhhc--C---CceEEEccCCCHHHHHH
Confidence 46899999999999999999998773 24332 22222211111111100 0 111 1111 1 23
Q ss_pred ccCC--CcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~d--ADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+++ .|+||.+++.+... ..+-...+..|..-...+.+.+.+. +....++++|.
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~-~~~~~iv~~SS 127 (349)
T TIGR02622 70 AIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAI-GSVKAVVNVTS 127 (349)
T ss_pred HHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhc-CCCCEEEEEec
Confidence 3443 59999988854211 1123456677888788888877664 22345666664
No 182
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.08 E-value=0.084 Score=50.31 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=47.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc--------------cchhhhHHHHHHHHhcccCCCcccEE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--------------ERSLQALEGVAMELEDSLFPLLREVK 161 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~--------------d~~~~~l~g~a~DL~~~~~~~~~~v~ 161 (442)
..||+|||+ |++|+.++..|+..|+- .+.|.|.|. |....+++..+..|.... +. .++.
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~Gvg----~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln-p~-v~v~ 100 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARSGVG----NLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN-PF-VEIE 100 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCCC----eEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC-CC-CEEE
Confidence 469999995 99999999999999972 266655431 112235554444444332 21 1222
Q ss_pred Ee-----cC-cccccCCCcEEEEeC
Q 013466 162 IG-----IN-PYELFEDAEWALLIG 180 (442)
Q Consensus 162 i~-----~~-~~eal~dADiVIi~a 180 (442)
.. .. ..+.++++|+||.+.
T Consensus 101 ~~~~~i~~~~~~~~~~~~DvVI~a~ 125 (212)
T PRK08644 101 AHNEKIDEDNIEELFKDCDIVVEAF 125 (212)
T ss_pred EEeeecCHHHHHHHHcCCCEEEECC
Confidence 21 11 125678999998773
No 183
>PRK12746 short chain dehydrogenase; Provisional
Probab=95.08 E-value=0.4 Score=45.72 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+|.|+||+|.||++++..|+..|.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~ 31 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGA 31 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 6899999999999999999998774
No 184
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.08 E-value=0.37 Score=45.35 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=32.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
.+|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.+.....++.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l~ 51 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGY-----KVAI----TARDQKELEEAAAELN 51 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC-----EEEE----eeCCHHHHHHHHHHHh
Confidence 5899999999999999999998764 2444 2445555554555554
No 185
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.06 E-value=0.39 Score=46.50 Aligned_cols=114 Identities=14% Similarity=-0.027 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec---------Cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~---------~~ 166 (442)
.++|.|+||+|+||..++..|+..|. .+.+. +++.+.++....++....+ ....++. .-
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~~~~~---~~~D~~~~~~~~~~~~~~ 72 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-----RVAIG----DLDEALAKETAAELGLVVG---GPLDVTDPASFAAFLDAV 72 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHhccceE---EEccCCCHHHHHHHHHHH
Confidence 35899999999999999999998774 24442 4555665544444431110 0011110 01
Q ss_pred ccccCCCcEEEEeCCcCCCCC-C--c---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 YELFEDAEWALLIGAKPRGPG-M--E---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~kpg-~--~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+.+.|++|..+|...... . + -...+..|.. +.+.+.+.+.+. ..+.|++++-
T Consensus 73 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~--~~g~iv~isS 137 (273)
T PRK07825 73 EADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR--GRGHVVNVAS 137 (273)
T ss_pred HHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEEEcC
Confidence 122457899999988643211 1 1 1223445543 444455555552 4567777764
No 186
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.00 E-value=0.18 Score=48.16 Aligned_cols=114 Identities=17% Similarity=0.147 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~e---- 168 (442)
.++|.|+||+|.||.+++..|+..|. .+.+. +++.+..+....++.+.. .++. +..| +.+
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 73 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA-----AVAIA----DLNQDGANAVADEINKAG----GKAIGVAMDVTNEDAVNA 73 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----eEEEE----eCChHHHHHHHHHHHhcC----ceEEEEECCCCCHHHHHH
Confidence 46899999999999999999999875 25442 444555554555554321 1222 1221 111
Q ss_pred -------ccCCCcEEEEeCCcCCC-C-----CCcHHhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 -------LFEDAEWALLIGAKPRG-P-----GMERAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~k-p-----g~~r~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...|+||..+|.... + ..+-.+.+..|..- .+.+.+.+.+.. ..+.|++++-
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~~~iv~~ss 144 (262)
T PRK13394 74 GIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDD-RGGVVIYMGS 144 (262)
T ss_pred HHHHHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CCcEEEEEcc
Confidence 22458999998875321 1 11122334455443 555555552222 4456666663
No 187
>PRK06194 hypothetical protein; Provisional
Probab=95.00 E-value=0.25 Score=48.24 Aligned_cols=46 Identities=22% Similarity=0.122 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
+++|.|+||+|+||++++..|+..|. .+.+. +++.+.++....++.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~ 51 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM-----KLVLA----DVQQDALDRAVAELR 51 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-----EEEEE----eCChHHHHHHHHHHH
Confidence 36899999999999999999999874 24442 445555565555554
No 188
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.95 E-value=0.12 Score=51.74 Aligned_cols=64 Identities=9% Similarity=0.110 Sum_probs=39.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC---C
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED---A 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d---A 173 (442)
|||+||| .|.+|..++..|...+. +|.++ |++.++++.. .+. ......+..+.+++ +
T Consensus 1 m~Ig~IG-lG~mG~~mA~~L~~~g~-----~v~v~----dr~~~~~~~~----~~~------g~~~~~s~~~~~~~~~~a 60 (299)
T PRK12490 1 MKLGLIG-LGKMGGNMAERLREDGH-----EVVGY----DVNQEAVDVA----GKL------GITARHSLEELVSKLEAP 60 (299)
T ss_pred CEEEEEc-ccHHHHHHHHHHHhCCC-----EEEEE----ECCHHHHHHH----HHC------CCeecCCHHHHHHhCCCC
Confidence 4899999 59999999999998764 24443 5555554432 111 12233333444444 6
Q ss_pred cEEEEeC
Q 013466 174 EWALLIG 180 (442)
Q Consensus 174 DiVIi~a 180 (442)
|+||++.
T Consensus 61 dvVi~~v 67 (299)
T PRK12490 61 RTIWVMV 67 (299)
T ss_pred CEEEEEe
Confidence 8998873
No 189
>PLN02572 UDP-sulfoquinovose synthase
Probab=94.95 E-value=0.1 Score=55.09 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+++||.|+||+|.||++++..|+..|.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~ 72 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGY 72 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 356899999999999999999998774
No 190
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.94 E-value=0.14 Score=53.24 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++||+|+||+|.+|..+...|...+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~ 63 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPD 63 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCC
Confidence 456999999999999999999998854
No 191
>PLN02712 arogenate dehydrogenase
Probab=94.93 E-value=0.28 Score=54.67 Aligned_cols=93 Identities=23% Similarity=0.185 Sum_probs=53.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc-CC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-ED 172 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal-~d 172 (442)
.+++||+||| .|.+|..++..|...|. .|..+ +++.... .+.++ . +....+..+.+ ++
T Consensus 50 ~~~~kIgIIG-~G~mG~slA~~L~~~G~-----~V~~~----dr~~~~~--~A~~~-----G----v~~~~d~~e~~~~~ 108 (667)
T PLN02712 50 TTQLKIAIIG-FGNYGQFLAKTLISQGH-----TVLAH----SRSDHSL--AARSL-----G----VSFFLDPHDLCERH 108 (667)
T ss_pred CCCCEEEEEc-cCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHH--HHHHc-----C----CEEeCCHHHHhhcC
Confidence 4467999999 59999999999998763 24442 3332221 22221 1 22333444434 57
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHH-hhhCCCeEEEEeCC
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALN-AVASRNVKVIVVGN 223 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~-~~a~p~a~vivvtN 223 (442)
||+||++.- ...+.++.+.+. .+..++++|+.++.
T Consensus 109 aDvViLavP----------------~~~~~~vl~~l~~~~l~~g~iVvDv~S 144 (667)
T PLN02712 109 PDVILLCTS----------------IISTENVLKSLPLQRLKRNTLFVDVLS 144 (667)
T ss_pred CCEEEEcCC----------------HHHHHHHHHhhhhhcCCCCeEEEECCC
Confidence 999999833 122333333332 22346778887764
No 192
>PRK08265 short chain dehydrogenase; Provisional
Probab=94.90 E-value=0.092 Score=50.79 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=32.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL 149 (442)
..++.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~ 50 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA-----RVAIV----DIDADNGAAVAASL 50 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHh
Confidence 35899999999999999999999875 25553 44545455444433
No 193
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=94.88 E-value=0.35 Score=45.83 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e---- 168 (442)
..+|.|+||+|+||+.++..|+..+. .+.+. +++.+.......++.... .++.+. .| +.+
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~-----~v~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~ 69 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA-----KVAVF----DLNREAAEKVAADIRAKG----GNAQAFACDITDRDSVDT 69 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEEe----cCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 46899999999999999999999774 25442 344455554444443221 112211 11 111
Q ss_pred -------ccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHHHHHHHH----HHHHhhhCCCeEEEEeCC
Q 013466 169 -------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQG----KALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~kpg---~~r---~dll~~N~~Ii~~i~----~~I~~~a~p~a~vivvtN 223 (442)
.+...|+||..+|...... .+. ...+..|..-...+. +.+.+. ..+.+++++.
T Consensus 70 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~ii~iss 139 (250)
T TIGR03206 70 AVAAAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVER--GAGRIVNIAS 139 (250)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCeEEEEECc
Confidence 1235899999887532111 122 223555655444443 344342 3456666664
No 194
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=94.87 E-value=0.089 Score=53.54 Aligned_cols=89 Identities=12% Similarity=0.090 Sum_probs=52.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||+||| .|.||..++..|...|. .|..+ |++.+... +. .....+..+.+++||+|
T Consensus 147 ~~VgIIG-~G~IG~~vA~~L~~~G~-----~V~~~----d~~~~~~~----~~----------~~~~~~l~ell~~aDiV 202 (330)
T PRK12480 147 MTVAIIG-TGRIGAATAKIYAGFGA-----TITAY----DAYPNKDL----DF----------LTYKDSVKEAIKDADII 202 (330)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEEEE----eCChhHhh----hh----------hhccCCHHHHHhcCCEE
Confidence 5899999 59999999999987553 24443 33322211 00 11223457889999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++... ... .+..++. ...+.. .++++++|+++=
T Consensus 203 il~lP-----~t~------~t~~li~--~~~l~~-mk~gavlIN~aR 235 (330)
T PRK12480 203 SLHVP-----ANK------ESYHLFD--KAMFDH-VKKGAILVNAAR 235 (330)
T ss_pred EEeCC-----CcH------HHHHHHh--HHHHhc-CCCCcEEEEcCC
Confidence 98733 111 1112221 122333 357889998883
No 195
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=94.84 E-value=0.12 Score=55.30 Aligned_cols=102 Identities=15% Similarity=0.181 Sum_probs=59.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC---
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--- 171 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--- 171 (442)
.+.+|++|| .|.+|..++..|+..|. ++.++ |++.++.+..+..... . .. ..+....+..+..+
T Consensus 5 ~~~~IG~IG-LG~MG~~mA~nL~~~G~-----~V~V~----NRt~~k~~~l~~~~~~-~-Ga-~~~~~a~s~~e~v~~l~ 71 (493)
T PLN02350 5 ALSRIGLAG-LAVMGQNLALNIAEKGF-----PISVY----NRTTSKVDETVERAKK-E-GN-LPLYGFKDPEDFVLSIQ 71 (493)
T ss_pred CCCCEEEEe-eHHHHHHHHHHHHhCCC-----eEEEE----CCCHHHHHHHHHhhhh-c-CC-cccccCCCHHHHHhcCC
Confidence 467899999 79999999999999885 35553 5565665544321111 0 00 01122233334333
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+|+||+.... .+.+.++...+.....++.++|..||-
T Consensus 72 ~~dvIi~~v~~---------------~~aV~~Vi~gl~~~l~~G~iiID~sT~ 109 (493)
T PLN02350 72 KPRSVIILVKA---------------GAPVDQTIKALSEYMEPGDCIIDGGNE 109 (493)
T ss_pred CCCEEEEECCC---------------cHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 49999987321 233444433344433467788888864
No 196
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=94.82 E-value=0.25 Score=55.49 Aligned_cols=95 Identities=19% Similarity=0.157 Sum_probs=56.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.||+||| .|.+|..++..|...+... .|..+ |++.++++. +.++. . ......+..++++++|+|
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~~---~V~~~----d~~~~~~~~-a~~~g--~-----~~~~~~~~~~~~~~aDvV 67 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLAR---EVVAV----DRRAKSLEL-AVSLG--V-----IDRGEEDLAEAVSGADVI 67 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCCC---EEEEE----ECChhHHHH-HHHCC--C-----CCcccCCHHHHhcCCCEE
Confidence 6899999 5999999999999877421 24443 444444432 22211 1 001223445678999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
|++... +.+.++.+.+..+.+++.+|+.++.
T Consensus 68 ilavp~----------------~~~~~vl~~l~~~~~~~~ii~d~~s 98 (735)
T PRK14806 68 VLAVPV----------------LAMEKVLADLKPLLSEHAIVTDVGS 98 (735)
T ss_pred EECCCH----------------HHHHHHHHHHHHhcCCCcEEEEcCC
Confidence 998541 2344555555555445666655543
No 197
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=94.80 E-value=0.11 Score=53.75 Aligned_cols=79 Identities=9% Similarity=0.172 Sum_probs=50.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||+|||+.|.+|..++..|...|. ++.++ |++. . ....+.+++||+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~-----~V~~~----d~~~---------~--------------~~~~~~~~~aDl 145 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGY-----QVRIL----EQDD---------W--------------DRAEDILADAGM 145 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCC-----eEEEe----CCCc---------c--------------hhHHHHHhcCCE
Confidence 47999999679999999999999874 25553 2210 0 112456789999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
||++.-. ....+++ +.+.. ..|+++|+-++-
T Consensus 146 VilavP~------------~~~~~~~----~~l~~-l~~~~iv~Dv~S 176 (374)
T PRK11199 146 VIVSVPI------------HLTEEVI----ARLPP-LPEDCILVDLTS 176 (374)
T ss_pred EEEeCcH------------HHHHHHH----HHHhC-CCCCcEEEECCC
Confidence 9998431 1113334 33444 357888877764
No 198
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=94.78 E-value=0.12 Score=48.14 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=48.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCc----cccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INP----YELF 170 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~----~eal 170 (442)
..||.|+||+|.+|..++..|+..+. .+.+ .+++.++++..+.++.+.. . ..+... ..+ .+++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~-----~V~l----~~R~~~~~~~l~~~l~~~~-~--~~~~~~~~~~~~~~~~~~ 95 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGA-----RVVL----VGRDLERAQKAADSLRARF-G--EGVGAVETSDDAARAAAI 95 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHhhc-C--CcEEEeeCCCHHHHHHHH
Confidence 46999999889999999999998662 2544 2566677776666554221 1 122221 112 4678
Q ss_pred CCCcEEEEeCC
Q 013466 171 EDAEWALLIGA 181 (442)
Q Consensus 171 ~dADiVIi~ag 181 (442)
+++|+||.+..
T Consensus 96 ~~~diVi~at~ 106 (194)
T cd01078 96 KGADVVFAAGA 106 (194)
T ss_pred hcCCEEEECCC
Confidence 99999887644
No 199
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.77 E-value=0.12 Score=48.82 Aligned_cols=79 Identities=18% Similarity=0.095 Sum_probs=47.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v 160 (442)
..||.|+|+ |++|+.++..|+..|+- .+.|.|.|. |....+++..+..|.... |.. ++
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv~----~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v-~i 93 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGVG----TIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN-SDI-QV 93 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCC----eEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC-CCC-EE
Confidence 469999995 99999999999999962 255544331 111234555555555432 221 22
Q ss_pred EEec------CcccccCCCcEEEEeCC
Q 013466 161 KIGI------NPYELFEDAEWALLIGA 181 (442)
Q Consensus 161 ~i~~------~~~eal~dADiVIi~ag 181 (442)
.... +..+.++++|+||.+..
T Consensus 94 ~~~~~~i~~~~~~~~~~~~D~Vi~~~d 120 (202)
T TIGR02356 94 TALKERVTAENLELLINNVDLVLDCTD 120 (202)
T ss_pred EEehhcCCHHHHHHHHhCCCEEEECCC
Confidence 2211 11345889999988744
No 200
>PRK08339 short chain dehydrogenase; Provisional
Probab=94.76 E-value=0.54 Score=45.60 Aligned_cols=114 Identities=11% Similarity=0.049 Sum_probs=65.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc-----
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----- 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e----- 168 (442)
..+.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.... + .++.. ..| +.+
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-~--~~~~~~~~Dv~~~~~i~~~ 76 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGA-----DVILL----SRNEENLKKAREKIKSES-N--VDVSYIVADLTKREDLERT 76 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhhc-C--CceEEEEecCCCHHHHHHH
Confidence 4689999999999999999999884 25553 445556665555554221 1 01111 111 111
Q ss_pred -----ccCCCcEEEEeCCcCCCC---CCcHH---hHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -----LFEDAEWALLIGAKPRGP---GMERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -----al~dADiVIi~ag~~~kp---g~~r~---dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|++|..+|.+... ..+.. ..+..| ..+.+.+.+.+.+. ..+.||+++-.
T Consensus 77 ~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~--~~g~Ii~isS~ 145 (263)
T PRK08339 77 VKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERK--GFGRIIYSTSV 145 (263)
T ss_pred HHHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEcCc
Confidence 124579999988865321 12221 223344 34566666776653 35677777653
No 201
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=94.75 E-value=0.075 Score=55.82 Aligned_cols=104 Identities=17% Similarity=0.176 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|+|+|+ |.+|..++..|...|.. .|.+ .+++.+++...+.++... .....+..+.+.++|+
T Consensus 180 ~~~VlViGa-G~iG~~~a~~L~~~G~~----~V~v----~~rs~~ra~~la~~~g~~-------~i~~~~l~~~l~~aDv 243 (417)
T TIGR01035 180 GKKALLIGA-GEMGELVAKHLLRKGVG----KILI----ANRTYERAEDLAKELGGE-------AVKFEDLEEYLAEADI 243 (417)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCC----EEEE----EeCCHHHHHHHHHHcCCe-------EeeHHHHHHHHhhCCE
Confidence 469999996 99999999999987742 2555 255556666555544311 1111245678899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l 228 (442)
||.+.+.|. |-.+. +.+.. ....-....+++-+++|-|+=
T Consensus 244 Vi~aT~s~~-~ii~~--------e~l~~----~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 244 VISSTGAPH-PIVSK--------EDVER----ALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred EEECCCCCC-ceEcH--------HHHHH----HHhcCCCCeEEEEeCCCCCCC
Confidence 999866443 11111 11211 111101246899999997654
No 202
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=94.72 E-value=0.5 Score=47.07 Aligned_cols=113 Identities=14% Similarity=0.046 Sum_probs=61.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC-------ccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-------PYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~-------~~e 168 (442)
.++|.|+||+|.||++++..|+..|. .|..... +....+.. ..+.... ....++.+... ..+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~~~r----~~~~~~~~-~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~ 73 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY-----TVKATVR----DLTDRKKT-EHLLALD-GAKERLKLFKADLLEESSFEQ 73 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEEEC----CCcchHHH-HHHHhcc-CCCCceEEEecCCCCcchHHH
Confidence 35899999999999999999998774 2433211 11111111 1111100 00012222111 234
Q ss_pred ccCCCcEEEEeCCcCCCCCC--cHHhHHHHHHHHHHHHHHHHHhhhCCCe-EEEEeC
Q 013466 169 LFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAVASRNV-KVIVVG 222 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~--~r~dll~~N~~Ii~~i~~~I~~~a~p~a-~vivvt 222 (442)
+++++|+||.+|+... +.. ...+++..|..-...+.+.+.+. ++. .||.++
T Consensus 74 ~~~~~d~vih~A~~~~-~~~~~~~~~~~~~nv~gt~~ll~~~~~~--~~v~rvV~~S 127 (322)
T PLN02986 74 AIEGCDAVFHTASPVF-FTVKDPQTELIDPALKGTINVLNTCKET--PSVKRVILTS 127 (322)
T ss_pred HHhCCCEEEEeCCCcC-CCCCCchhhhhHHHHHHHHHHHHHHHhc--CCccEEEEec
Confidence 5778999999987432 111 22345677877777777776653 222 455554
No 203
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=94.66 E-value=0.12 Score=52.44 Aligned_cols=75 Identities=21% Similarity=0.183 Sum_probs=52.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
+...+++|||+ |.+|...+..|....-+ +.|.++ +++.++++..+.++.+. . .++....+..+++++|
T Consensus 126 ~~~~~lgiiG~-G~qA~~~l~al~~~~~~---~~v~V~----~r~~~~~~~~~~~~~~~--g--~~v~~~~~~~eav~~a 193 (325)
T TIGR02371 126 KDSSVLGIIGA-GRQAWTQLEALSRVFDL---EEVSVY----CRTPSTREKFALRASDY--E--VPVRAATDPREAVEGC 193 (325)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCC---CEEEEE----CCCHHHHHHHHHHHHhh--C--CcEEEeCCHHHHhccC
Confidence 34579999995 99999877666553222 345553 66777777777766532 1 2466667788999999
Q ss_pred cEEEEeC
Q 013466 174 EWALLIG 180 (442)
Q Consensus 174 DiVIi~a 180 (442)
|+|+.+-
T Consensus 194 DiVitaT 200 (325)
T TIGR02371 194 DILVTTT 200 (325)
T ss_pred CEEEEec
Confidence 9999853
No 204
>PRK07806 short chain dehydrogenase; Provisional
Probab=94.65 E-value=0.24 Score=47.09 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|+||.+++..|+..|.
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~ 31 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGA 31 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCC
Confidence 5899999999999999999998774
No 205
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=94.65 E-value=0.47 Score=45.51 Aligned_cols=115 Identities=14% Similarity=0.088 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe---cCcccc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---INPYEL--- 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~---~~~~ea--- 169 (442)
.++|.|+||+|.||++++..|+..|. .+.+. +++.+.++....++.... .++.+. ..+.+.
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~i~~~~----~~~~~~~~Dl~d~~~i~~ 78 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA-----RVVLS----ARKAEELEEAAAHLEALG----IDALWIAADVADEADIER 78 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CeEEEEEccCCCHHHHHH
Confidence 46899999999999999999998774 24442 444455554444443211 111111 112222
Q ss_pred --------cCCCcEEEEeCCcCCCCCC------cHHhHHHHHHHHHHHHHHHHHhh---hCCCeEEEEeCC
Q 013466 170 --------FEDAEWALLIGAKPRGPGM------ERAGLLDINGQIFAEQGKALNAV---ASRNVKVIVVGN 223 (442)
Q Consensus 170 --------l~dADiVIi~ag~~~kpg~------~r~dll~~N~~Ii~~i~~~I~~~---a~p~a~vivvtN 223 (442)
+...|.||..+|....... .-...+..|..-...+.+.+..+ ..+.+.+++++.
T Consensus 79 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 79 LAEETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 2467999998875321111 11233456655455555444332 123466777765
No 206
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.65 E-value=0.17 Score=49.40 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+++|.|+||+|+||.+++..|+..|.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~ 29 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH 29 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC
Confidence 45799999999999999999998774
No 207
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.65 E-value=0.13 Score=51.32 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=39.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC---CC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---DA 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~---dA 173 (442)
|||+||| .|.+|..++..|+..+. ++.++ |+++++++.. .+. .+....+..+.++ ++
T Consensus 1 m~Ig~IG-lG~MG~~mA~~L~~~g~-----~v~v~----dr~~~~~~~~----~~~------g~~~~~~~~e~~~~~~~~ 60 (301)
T PRK09599 1 MQLGMIG-LGRMGGNMARRLLRGGH-----EVVGY----DRNPEAVEAL----AEE------GATGADSLEELVAKLPAP 60 (301)
T ss_pred CEEEEEc-ccHHHHHHHHHHHHCCC-----eEEEE----ECCHHHHHHH----HHC------CCeecCCHHHHHhhcCCC
Confidence 4899999 59999999999998774 25553 5555555433 111 1223233333444 46
Q ss_pred cEEEEe
Q 013466 174 EWALLI 179 (442)
Q Consensus 174 DiVIi~ 179 (442)
|+||++
T Consensus 61 dvvi~~ 66 (301)
T PRK09599 61 RVVWLM 66 (301)
T ss_pred CEEEEE
Confidence 998886
No 208
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=94.64 E-value=0.11 Score=50.78 Aligned_cols=96 Identities=16% Similarity=0.224 Sum_probs=59.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC--CcE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--AEW 175 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d--ADi 175 (442)
||.|+||+|.||++++..|...|. ++.. + ++. ..|+.+.. ...+++++ .|+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-----~v~~--~--~r~-------~~d~~~~~-----------~~~~~~~~~~~d~ 53 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-----VVVA--L--TSS-------QLDLTDPE-----------ALERLLRAIRPDA 53 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-----EEEE--e--CCc-------ccCCCCHH-----------HHHHHHHhCCCCE
Confidence 689999999999999999998763 2433 1 221 12222111 11233444 499
Q ss_pred EEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 176 ALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 176 VIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
||.+++....+. .....++..|......+++.+.+. + ..++.++.
T Consensus 54 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~--~~~v~~Ss 100 (287)
T TIGR01214 54 VVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARH-G--ARLVHIST 100 (287)
T ss_pred EEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEee
Confidence 999887543222 134456778888888888887764 2 25555553
No 209
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=94.63 E-value=0.097 Score=55.80 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=59.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcc---cccCCCc
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY---ELFEDAE 174 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~---eal~dAD 174 (442)
+|+||| .|.+|..++..|+..|. +|.++ |++.++++....+.... ..+....+.. +.++.+|
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~~~G~-----~V~v~----drt~~~~~~l~~~~~~g-----~~~~~~~s~~e~v~~l~~~d 65 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMADHGF-----TVSVY----NRTPEKTDEFLAEHAKG-----KKIVGAYSIEEFVQSLERPR 65 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHHhcCC-----eEEEE----eCCHHHHHHHHhhccCC-----CCceecCCHHHHHhhcCCCC
Confidence 489999 69999999999999885 25553 55656665443211100 0122222222 2456789
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC--chhHHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN--Pvd~lt 229 (442)
+||+..-. .+.+.++...+..+..++.+||..+| |.++..
T Consensus 66 vIil~v~~---------------~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~ 107 (467)
T TIGR00873 66 KIMLMVKA---------------GAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTER 107 (467)
T ss_pred EEEEECCC---------------cHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHH
Confidence 88886321 13344444555554446778898987 555443
No 210
>PRK12827 short chain dehydrogenase; Provisional
Probab=94.63 E-value=0.61 Score=44.02 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--cccc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL--- 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~ea--- 169 (442)
.++|.|+||+|++|..++..|+..|. .+.+......++.+.++....++.... .++.+. .| +.+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 76 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA-----DVIVLDIHPMRGRAEADAVAAGIEAAG----GKALGLAFDVRDFAATRA 76 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----eEEEEcCcccccHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 46899999999999999999998774 244422112223344443433332211 122221 11 1211
Q ss_pred --------cCCCcEEEEeCCcCC-CCC--CcH---HhHHHHHHHHHHHHHHHHH----hhhCCCeEEEEeCCc
Q 013466 170 --------FEDAEWALLIGAKPR-GPG--MER---AGLLDINGQIFAEQGKALN----AVASRNVKVIVVGNP 224 (442)
Q Consensus 170 --------l~dADiVIi~ag~~~-kpg--~~r---~dll~~N~~Ii~~i~~~I~----~~a~p~a~vivvtNP 224 (442)
....|.||..+|... ++- .+. ...+..|..-...+.+.+. +.. ....+++++-.
T Consensus 77 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~iv~~sS~ 148 (249)
T PRK12827 77 ALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRAR-RGGRIVNIASV 148 (249)
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-CCeEEEEECCc
Confidence 246899999888543 111 111 2245566665555665554 111 23456666543
No 211
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.59 E-value=0.29 Score=47.14 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=56.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch----hhh---HHHHHHHHhcccCCCcccEEEecCccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS----LQA---LEGVAMELEDSLFPLLREVKIGINPYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~----~~~---l~g~a~DL~~~~~~~~~~v~i~~~~~e 168 (442)
-.||.|+|| |.+|..++..|...|+-. +.|.+. |++ .++ +.....++.+.. .. .. ...+..+
T Consensus 25 ~~rvlvlGA-GgAg~aiA~~L~~~G~~~--~~i~iv----dr~gl~~~~r~~~L~~~~~~la~~~-~~-~~--~~~~l~~ 93 (226)
T cd05311 25 EVKIVINGA-GAAGIAIARLLLAAGAKP--ENIVVV----DSKGVIYEGREDDLNPDKNEIAKET-NP-EK--TGGTLKE 93 (226)
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCcCc--ceEEEE----eCCCccccccchhhhHHHHHHHHHh-cc-Cc--ccCCHHH
Confidence 369999996 999999999999887620 136553 333 222 222222222111 00 01 1123458
Q ss_pred ccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+++++|+||-+.+ +|+-- .++.+.+. ++.+++.++||..
T Consensus 94 ~l~~~dvlIgaT~----~G~~~-----------~~~l~~m~----~~~ivf~lsnP~~ 132 (226)
T cd05311 94 ALKGADVFIGVSR----PGVVK-----------KEMIKKMA----KDPIVFALANPVP 132 (226)
T ss_pred HHhcCCEEEeCCC----CCCCC-----------HHHHHhhC----CCCEEEEeCCCCC
Confidence 8899999988754 45411 12222222 4567777889964
No 212
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.57 E-value=0.44 Score=45.35 Aligned_cols=113 Identities=14% Similarity=0.085 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
..+|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.... .++.+ ..| +.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 70 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA-----KVVI----ADLNDEAAAAAAEALQKAG----GKAIGVAMDVTDEEAINA 70 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 35899999999999999999998774 2444 2455555555555553211 11211 111 11
Q ss_pred ------cccCCCcEEEEeCCcCCC-CC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ------ELFEDAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~k-pg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+.+.|+||..+|.... +. .+. .+.+..|.. +++.+.+.+.+. ....|++++.
T Consensus 71 ~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~iss 140 (258)
T PRK12429 71 GIDYAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQ--GGGRIINMAS 140 (258)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhc--CCeEEEEEcc
Confidence 123468999998875321 11 111 122333433 255555555553 3456666664
No 213
>PRK06153 hypothetical protein; Provisional
Probab=94.55 E-value=0.061 Score=55.63 Aligned_cols=54 Identities=20% Similarity=0.056 Sum_probs=35.1
Q ss_pred ceeeEEeecccchHH-h--hhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEec
Q 013466 75 YGVFCLTYDLKAEEE-T--KSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (442)
Q Consensus 75 ~~v~~~~~~~~~~~~-~--~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (442)
=+||+-.--+..... . ...-+..||+|||+ |++|+.++..|+..|+ + +|.|.|.
T Consensus 152 ~svf~y~dt~s~R~~i~~~q~kL~~~~VaIVG~-GG~GS~Va~~LAR~GV-g---eI~LVD~ 208 (393)
T PRK06153 152 DSVFNYPDTASSRAGIGALSAKLEGQRIAIIGL-GGTGSYILDLVAKTPV-R---EIHLFDG 208 (393)
T ss_pred CCceehhhhhccccChHHHHHHHhhCcEEEEcC-CccHHHHHHHHHHcCC-C---EEEEECC
Confidence 478875433333311 0 11123469999995 9999999999999997 2 3666443
No 214
>PRK05650 short chain dehydrogenase; Provisional
Probab=94.54 E-value=0.51 Score=45.69 Aligned_cols=112 Identities=11% Similarity=0.062 Sum_probs=61.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--ccc-----
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE----- 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~e----- 168 (442)
++|.|+||+|+||..++..|+..|. .+.+. +++.+.++....++.... .++. +..| +.+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~-----~V~~~----~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~ 67 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW-----RLALA----DVNEEGGEETLKLLREAG----GDGFYQRCDVRDYSQLTAL 67 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CceEEEEccCCCHHHHHHH
Confidence 3689999999999999999999875 25443 344455555544454221 1111 1111 111
Q ss_pred ------ccCCCcEEEEeCCcCCC-C--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 ------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 ------al~dADiVIi~ag~~~k-p--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...|+||..+|.... + ..+. ...+..|.. +.+.+.+.+.+. ..+.|++++.
T Consensus 68 ~~~i~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~vsS 136 (270)
T PRK05650 68 AQACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQ--KSGRIVNIAS 136 (270)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 22468999998885431 1 1111 123455533 344444555553 3456666664
No 215
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.52 E-value=0.041 Score=52.90 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=43.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCc-----cccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INP-----YELF 170 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~-----~eal 170 (442)
|+|+|+|| |.+|++++..|...|. .+.+ +|.++++++....|-.+. .+... ..+ ..-+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~-----~Vv~----Id~d~~~~~~~~~~~~~~------~~v~gd~t~~~~L~~agi 64 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH-----NVVL----IDRDEERVEEFLADELDT------HVVIGDATDEDVLEEAGI 64 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC-----ceEE----EEcCHHHHHHHhhhhcce------EEEEecCCCHHHHHhcCC
Confidence 68999995 9999999999999874 3556 355556655432221111 12221 112 2348
Q ss_pred CCCcEEEEeCC
Q 013466 171 EDAEWALLIGA 181 (442)
Q Consensus 171 ~dADiVIi~ag 181 (442)
.++|.++.+-|
T Consensus 65 ~~aD~vva~t~ 75 (225)
T COG0569 65 DDADAVVAATG 75 (225)
T ss_pred CcCCEEEEeeC
Confidence 88999988744
No 216
>PRK07478 short chain dehydrogenase; Provisional
Probab=94.50 E-value=0.65 Score=44.40 Aligned_cols=113 Identities=18% Similarity=0.073 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
..++.|+||+|+||..++..|+..|. .+.+. +++.+.++....++.+.. .++.. ..| +.
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 72 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA-----KVVVG----ARRQAELDQLVAEIRAEG----GEAVALAGDVRDEAYAKA 72 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 35899999999999999999999874 24442 455566666655554321 11211 111 11
Q ss_pred ------cccCCCcEEEEeCCcC--CCCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ------ELFEDAEWALLIGAKP--RGPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~--~kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..+|.. ..+- .+. ...+..|.. ..+.+.+.+.+. ..+.+++++.
T Consensus 73 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~--~~~~iv~~sS 143 (254)
T PRK07478 73 LVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR--GGGSLIFTST 143 (254)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 1234689999988853 2221 122 233555643 444555555552 3566766664
No 217
>PRK07814 short chain dehydrogenase; Provisional
Probab=94.49 E-value=0.39 Score=46.41 Aligned_cols=114 Identities=14% Similarity=0.098 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ec--Ccccc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYEL--- 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~--~~~ea--- 169 (442)
..+|.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++.... .++.+ .. .+++.
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~-----~Vi~~----~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~ 76 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGA-----DVLIA----ARTESQLDEVAEQIRAAG----RRAHVVAADLAHPEATAG 76 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 46899999999999999999998774 24442 445555555555554211 11221 11 12222
Q ss_pred --------cCCCcEEEEeCCcCCC-C-C-Cc---HHhHHHHHHHHHHHHH----HHHHhhhCCCeEEEEeCC
Q 013466 170 --------FEDAEWALLIGAKPRG-P-G-ME---RAGLLDINGQIFAEQG----KALNAVASRNVKVIVVGN 223 (442)
Q Consensus 170 --------l~dADiVIi~ag~~~k-p-g-~~---r~dll~~N~~Ii~~i~----~~I~~~a~p~a~vivvtN 223 (442)
+...|+||..+|.... + . .+ -.+.+..|..-...+. +.+.+.. ..+.+++++.
T Consensus 77 ~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~g~iv~~sS 147 (263)
T PRK07814 77 LAGQAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHS-GGGSVINISS 147 (263)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhc-CCeEEEEEcc
Confidence 3468999998875321 1 1 11 1233445544333333 3333322 4566777765
No 218
>PRK07069 short chain dehydrogenase; Validated
Probab=94.48 E-value=0.62 Score=44.19 Aligned_cols=114 Identities=12% Similarity=0.071 Sum_probs=64.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch-hhhHHHHHHHHhcccCCCcccEE-EecC--c-------
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVK-IGIN--P------- 166 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~-~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~------- 166 (442)
||.|+||+|+||.+++..|+..|. .+.+. +++ .+.++....++.+.... ..+. +..| +
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~ 69 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA-----KVFLT----DINDAAGLDAFAAEINAAHGE--GVAFAAVQDVTDEAQWQAL 69 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-----EEEEE----eCCcchHHHHHHHHHHhcCCC--ceEEEEEeecCCHHHHHHH
Confidence 589999999999999999998774 24442 333 34455554444322100 0011 1111 1
Q ss_pred ----ccccCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 ----YELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~kpg---~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|+||..+|...... .+ -...+..|.. ..+.+.+.+.+. ..+.|++++..
T Consensus 70 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~ii~~ss~ 139 (251)
T PRK07069 70 LAQAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRAS--QPASIVNISSV 139 (251)
T ss_pred HHHHHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc--CCcEEEEecCh
Confidence 122456899999888543211 11 1234556665 566666776653 34566666643
No 219
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=94.46 E-value=0.25 Score=48.79 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=43.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+++||+|||+ |.||..++..|... ..+ +.+.-+ .|++.++++..+..+.. .....+..+.+.++|
T Consensus 5 ~~irIGIIG~-G~IG~~~a~~L~~~-~~~----~el~aV-~dr~~~~a~~~a~~~g~--------~~~~~~~eell~~~D 69 (271)
T PRK13302 5 PELRVAIAGL-GAIGKAIAQALDRG-LPG----LTLSAV-AVRDPQRHADFIWGLRR--------PPPVVPLDQLATHAD 69 (271)
T ss_pred CeeEEEEECc-cHHHHHHHHHHHhc-CCC----eEEEEE-ECCCHHHHHHHHHhcCC--------CcccCCHHHHhcCCC
Confidence 4589999995 99999999988764 111 222211 24555555544332210 112244556678899
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+|++++.
T Consensus 70 ~Vvi~tp 76 (271)
T PRK13302 70 IVVEAAP 76 (271)
T ss_pred EEEECCC
Confidence 9999865
No 220
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=94.44 E-value=0.19 Score=51.15 Aligned_cols=66 Identities=15% Similarity=0.062 Sum_probs=41.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+.+||+|||. |.+|.+++..|...|+ ++.+.+. ...+....+.+. . +.. .+..++++.||
T Consensus 16 ~gktIgIIG~-GsmG~AlA~~L~~sG~-----~Vvv~~r----~~~~s~~~A~~~-----G----~~~-~s~~eaa~~AD 75 (330)
T PRK05479 16 KGKKVAIIGY-GSQGHAHALNLRDSGV-----DVVVGLR----EGSKSWKKAEAD-----G----FEV-LTVAEAAKWAD 75 (330)
T ss_pred CCCEEEEEee-HHHHHHHHHHHHHCCC-----EEEEEEC----CchhhHHHHHHC-----C----Cee-CCHHHHHhcCC
Confidence 3468999995 9999999999998875 2443221 111112122211 1 122 25678899999
Q ss_pred EEEEeC
Q 013466 175 WALLIG 180 (442)
Q Consensus 175 iVIi~a 180 (442)
+|+++.
T Consensus 76 VVvLaV 81 (330)
T PRK05479 76 VIMILL 81 (330)
T ss_pred EEEEcC
Confidence 999973
No 221
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=94.43 E-value=0.096 Score=52.05 Aligned_cols=99 Identities=17% Similarity=0.076 Sum_probs=58.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--CCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--dAD 174 (442)
|||.|+||+|.||++++..|...+. +.. + ++.... ...|+.+.. ...+.++ +.|
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g~------V~~--~--~~~~~~---~~~Dl~d~~-----------~~~~~~~~~~~D 56 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLGN------LIA--L--DVHSTD---YCGDFSNPE-----------GVAETVRKIRPD 56 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccCC------EEE--e--cccccc---ccCCCCCHH-----------HHHHHHHhcCCC
Confidence 5899999999999999999987662 322 1 221110 111222111 1123344 489
Q ss_pred EEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 175 iVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+||.+++..... ..+.......|+.-...+++.+.+. + .+++.+|
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~-g--~~~v~~S 103 (299)
T PRK09987 57 VIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEV-G--AWVVHYS 103 (299)
T ss_pred EEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEc
Confidence 999988753211 1223334567888888888888774 2 3555555
No 222
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.38 E-value=0.23 Score=46.75 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=46.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc-----------------ccchhhhHHHHHHHHhcccCCCccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG-----------------SERSLQALEGVAMELEDSLFPLLRE 159 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d-----------------~d~~~~~l~g~a~DL~~~~~~~~~~ 159 (442)
.||.|+|+ |++|+.++..|+..|+ + .+.|.|.| .|....+++..+..|.+.. |.. +
T Consensus 20 s~VlviG~-gglGsevak~L~~~GV-g---~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lN-p~v-~ 92 (198)
T cd01485 20 AKVLIIGA-GALGAEIAKNLVLAGI-D---SITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELN-PNV-K 92 (198)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC-C---EEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHC-CCC-E
Confidence 59999995 9999999999999997 2 35554433 1112234444444454433 321 2
Q ss_pred EEEec--------CcccccCCCcEEEEeC
Q 013466 160 VKIGI--------NPYELFEDAEWALLIG 180 (442)
Q Consensus 160 v~i~~--------~~~eal~dADiVIi~a 180 (442)
+.... +..+-++++|+||.+.
T Consensus 93 i~~~~~~~~~~~~~~~~~~~~~dvVi~~~ 121 (198)
T cd01485 93 LSIVEEDSLSNDSNIEEYLQKFTLVIATE 121 (198)
T ss_pred EEEEecccccchhhHHHHHhCCCEEEECC
Confidence 32211 1234578999999773
No 223
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.38 E-value=0.21 Score=50.46 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=45.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCce-EEEecccc-chhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPI-ALKLLGSE-RSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I-~L~l~d~d-~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
.++|+| ||+|.||..+...|-+++. . + .|+++.+. +. .|. ...+. ..++.+..-+.+++++.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~f-p----v~~l~l~~s~~~s----~gk-----~i~f~-g~~~~V~~l~~~~f~~v 66 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDL-E----IEQISIVEIEPFG----EEQ-----GIRFN-NKAVEQIAPEEVEWADF 66 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCC-c----hhheeeccccccc----CCC-----EEEEC-CEEEEEEECCccCcccC
Confidence 368999 9999999999999998885 2 2 24444332 11 111 11111 13556655567799999
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|++++ +|
T Consensus 67 Dia~f-ag 73 (322)
T PRK06901 67 NYVFF-AG 73 (322)
T ss_pred CEEEE-cC
Confidence 99999 65
No 224
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.36 E-value=0.36 Score=46.36 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL 149 (442)
+++|.|+||+|+||..++..|++.|. .+.+ .+++.+.++....++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~ 46 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-----TLGL----VARRTDALQAFAARL 46 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHhc
Confidence 35899999999999999999998774 2444 244555555444444
No 225
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.34 E-value=0.19 Score=49.71 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=51.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|.|+|| |++|.+++..|...+.. .|.+ .+++.++++..+.++.... .+.+..+..+.+.++|+
T Consensus 123 ~k~vlVlGa-Gg~a~ai~~aL~~~g~~----~V~v----~~R~~~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~~Di 188 (278)
T PRK00258 123 GKRILILGA-GGAARAVILPLLDLGVA----EITI----VNRTVERAEELAKLFGALG-----KAELDLELQEELADFDL 188 (278)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHhhhcc-----ceeecccchhccccCCE
Confidence 468999996 99999999999987752 2555 3667777777766654221 12221233577899999
Q ss_pred EEEeCCcCC
Q 013466 176 ALLIGAKPR 184 (442)
Q Consensus 176 VIi~ag~~~ 184 (442)
||.+.....
T Consensus 189 vInaTp~g~ 197 (278)
T PRK00258 189 IINATSAGM 197 (278)
T ss_pred EEECCcCCC
Confidence 998754433
No 226
>PLN02780 ketoreductase/ oxidoreductase
Probab=94.33 E-value=0.54 Score=47.40 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=37.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~ 151 (442)
...+.|+||+|+||.+++..|+..|. .|.+ .+++.++++..+.++..
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~-----~Vil----~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL-----NLVL----VARNPDKLKDVSDSIQS 99 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----CEEE----EECCHHHHHHHHHHHHH
Confidence 45788999999999999999999875 2555 36677788877777753
No 227
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.31 E-value=0.48 Score=44.48 Aligned_cols=46 Identities=26% Similarity=0.327 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
+++|.|+||+|.+|..++..|+..|. .+.+ .+++.+.++....++.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~ 50 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA-----KVVI----YDSNEEAAEALAAELR 50 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCChhHHHHHHHHHH
Confidence 46899999999999999999998775 2433 2455555554444444
No 228
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=94.30 E-value=0.037 Score=54.87 Aligned_cols=133 Identities=15% Similarity=0.114 Sum_probs=78.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc----CCCCCC--CceEEEeccccc--hhhh--HHHHHHHHhcccCCCcccEEEecCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG----EVLGPD--QPIALKLLGSER--SLQA--LEGVAMELEDSLFPLLREVKIGINP 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~----~l~~~~--~~I~L~l~d~d~--~~~~--l~g~a~DL~~~~~~~~~~v~i~~~~ 166 (442)
.||.|.|| |..|..++..|+.. |+-.++ +.|.+ +|.+- ..++ +...-..+.+.. . . ....+.
T Consensus 26 ~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~--vD~~Gll~~~r~~l~~~~~~~a~~~-~---~-~~~~~L 97 (279)
T cd05312 26 QRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWL--VDSKGLLTKDRKDLTPFKKPFARKD-E---E-KEGKSL 97 (279)
T ss_pred cEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEE--EcCCCeEeCCCCcchHHHHHHHhhc-C---c-ccCCCH
Confidence 69999996 99999999988876 642111 23433 33321 0111 222222222111 0 0 123567
Q ss_pred ccccC--CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch---hHHHHHHHHHCCCCCc
Q 013466 167 YELFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSIPA 241 (442)
Q Consensus 167 ~eal~--dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv---d~lt~~~~k~s~~~p~ 241 (442)
.|+++ ++|++|=+.+. +|. +-+++.+.|.+++ ++.+|+-.+||. +....-+++.+.+ +
T Consensus 98 ~e~i~~v~ptvlIG~S~~---~g~-----------ft~evv~~Ma~~~-~~PIIFaLSNPt~~~E~~pe~a~~~t~G--~ 160 (279)
T cd05312 98 LEVVKAVKPTVLIGLSGV---GGA-----------FTEEVVRAMAKSN-ERPIIFALSNPTSKAECTAEDAYKWTDG--R 160 (279)
T ss_pred HHHHHhcCCCEEEEeCCC---CCC-----------CCHHHHHHHHhcC-CCCEEEECCCcCCccccCHHHHHHhhcC--C
Confidence 89999 89998866542 231 2245666677775 889999999997 4566666666533 3
Q ss_pred ceeeccchhhHHH
Q 013466 242 KNFHALTRLDENR 254 (442)
Q Consensus 242 kvig~gT~LDs~R 254 (442)
.+|++|+-.+...
T Consensus 161 ai~ATGsPf~pv~ 173 (279)
T cd05312 161 ALFASGSPFPPVE 173 (279)
T ss_pred EEEEeCCCCCCee
Confidence 5788887655443
No 229
>PRK12744 short chain dehydrogenase; Provisional
Probab=94.30 E-value=0.66 Score=44.49 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|+||.+++..|+..|.
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~ 33 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGA 33 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998774
No 230
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.29 E-value=0.48 Score=46.91 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=62.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--cc------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY------ 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~------ 167 (442)
.+|.|+||+|+||..++..|+..|. .|.+ .+++.+.++....++.... ..+. +..| +.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~-----~Vi~----~~R~~~~l~~~~~~l~~~~----~~~~~~~~Dl~d~~~v~~~ 107 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGA-----TVVA----VARREDLLDAVADRITRAG----GDAMAVPCDLSDLDAVDAL 107 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHH
Confidence 5899999999999999999998874 2544 2555666665555553211 0111 1111 11
Q ss_pred -----cccCCCcEEEEeCCcCC-CCCCc----H---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 -----ELFEDAEWALLIGAKPR-GPGME----R---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 -----eal~dADiVIi~ag~~~-kpg~~----r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|+||..+|... .+-.+ . ...+..|. .+.+.+.+.+.+. ..+.+++++.
T Consensus 108 ~~~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS 178 (293)
T PRK05866 108 VADVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLER--GDGHIINVAT 178 (293)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcEEEEECC
Confidence 12347899999887542 11111 1 12344443 2344555555553 3456666664
No 231
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=94.29 E-value=0.37 Score=46.13 Aligned_cols=47 Identities=23% Similarity=0.174 Sum_probs=33.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~ 151 (442)
..++.|+||+|+||.+++..|+..|. .+.+. +++.+.+.....++.+
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~-----~vvl~----~r~~~~~~~~~~~l~~ 55 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA-----EIIIN----DITAERAELAVAKLRQ 55 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC-----EEEEE----cCCHHHHHHHHHHHHh
Confidence 45899999999999999999998774 25452 4455556555555543
No 232
>PRK08291 ectoine utilization protein EutC; Validated
Probab=94.29 E-value=0.16 Score=51.62 Aligned_cols=75 Identities=21% Similarity=0.153 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
...+|+|||+ |..|...+..+....-+. .|.++ +++.++++..+.++++.. + ..+....+..+++++||
T Consensus 131 ~~~~v~IiGa-G~~a~~~~~al~~~~~~~---~V~v~----~R~~~~a~~l~~~~~~~~-g--~~v~~~~d~~~al~~aD 199 (330)
T PRK08291 131 DASRAAVIGA-GEQARLQLEALTLVRPIR---EVRVW----ARDAAKAEAYAADLRAEL-G--IPVTVARDVHEAVAGAD 199 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCC---EEEEE----cCCHHHHHHHHHHHhhcc-C--ceEEEeCCHHHHHccCC
Confidence 3569999995 999999888777532222 36663 677788888887775321 1 23455556678899999
Q ss_pred EEEEeC
Q 013466 175 WALLIG 180 (442)
Q Consensus 175 iVIi~a 180 (442)
+|+.+.
T Consensus 200 iVi~aT 205 (330)
T PRK08291 200 IIVTTT 205 (330)
T ss_pred EEEEee
Confidence 998863
No 233
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.26 E-value=0.089 Score=55.23 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=51.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||.|||| |.+|..++..|...|.- .|.+ .+++.++++.++..+... .+....+.++.+.+||+
T Consensus 181 ~kkvlviGa-G~~a~~va~~L~~~g~~----~I~V----~nRt~~ra~~La~~~~~~------~~~~~~~l~~~l~~aDi 245 (414)
T PRK13940 181 SKNVLIIGA-GQTGELLFRHVTALAPK----QIML----ANRTIEKAQKITSAFRNA------SAHYLSELPQLIKKADI 245 (414)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCC----EEEE----ECCCHHHHHHHHHHhcCC------eEecHHHHHHHhccCCE
Confidence 368999995 99999999999987752 3555 477777777666654311 12222344788999999
Q ss_pred EEEeCCcC
Q 013466 176 ALLIGAKP 183 (442)
Q Consensus 176 VIi~ag~~ 183 (442)
||.+-+.|
T Consensus 246 VI~aT~a~ 253 (414)
T PRK13940 246 IIAAVNVL 253 (414)
T ss_pred EEECcCCC
Confidence 99986655
No 234
>PRK12937 short chain dehydrogenase; Provisional
Probab=94.25 E-value=0.15 Score=48.26 Aligned_cols=27 Identities=26% Similarity=0.195 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+..+|.|+||+|.+|++++..|+..|.
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~ 30 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF 30 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 346899999999999999999999875
No 235
>PRK08643 acetoin reductase; Validated
Probab=94.23 E-value=0.64 Score=44.41 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=62.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------- 166 (442)
.++.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++.+.. .++.. ..| +
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~ 69 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF-----KVAIV----DYNEETAQAAADKLSKDG----GKAIAVKADVSDRDQVFAA 69 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CeEEEEECCCCCHHHHHHH
Confidence 4788999999999999999998874 24442 444455555555554321 01111 111 1
Q ss_pred ----ccccCCCcEEEEeCCcCC-CCCC--cH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 ----YELFEDAEWALLIGAKPR-GPGM--ER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~-kpg~--~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|+||.++|... .+.. +. ...+..|.. +.+.+.+.+.+. .+++.+++++..
T Consensus 70 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~~iv~~sS~ 140 (256)
T PRK08643 70 VRQVVDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKL-GHGGKIINATSQ 140 (256)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCCEEEEECcc
Confidence 122346899999887532 2211 11 223444543 233334444442 245677777753
No 236
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.23 E-value=0.094 Score=50.54 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++||.|+||+|.+|..++..|+..+.
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~ 42 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF 42 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC
Confidence 467999999999999999999998763
No 237
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=94.23 E-value=0.26 Score=51.58 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=55.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc----ccccC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELFE 171 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~----~eal~ 171 (442)
.++|.|+||+|++|.+++..|+..|. .+.+. +++.+.+... +.+..... ..+..-..+ .+.+.
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~G~-----~Vi~l----~r~~~~l~~~---~~~~~~~v-~~v~~Dvsd~~~v~~~l~ 244 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQGA-----KVVAL----TSNSDKITLE---INGEDLPV-KTLHWQVGQEAALAELLE 244 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHH---HhhcCCCe-EEEEeeCCCHHHHHHHhC
Confidence 46899999999999999999998774 24432 3333333221 11111000 011111112 23467
Q ss_pred CCcEEEEeCCcCCCCCCcH---HhHHHHHHH----HHHHHHHHHHh
Q 013466 172 DAEWALLIGAKPRGPGMER---AGLLDINGQ----IFAEQGKALNA 210 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r---~dll~~N~~----Ii~~i~~~I~~ 210 (442)
+.|++|..+|.......+. .+.++.|.. +++.+.+.+++
T Consensus 245 ~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~ 290 (406)
T PRK07424 245 KVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKT 290 (406)
T ss_pred CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999887543222222 234555544 45555555554
No 238
>PRK07904 short chain dehydrogenase; Provisional
Probab=94.23 E-value=0.6 Score=45.06 Aligned_cols=116 Identities=10% Similarity=0.070 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhh-HHHHHHHHhcccCCCcccEEEe-cC--cc---
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA-LEGVAMELEDSLFPLLREVKIG-IN--PY--- 167 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~-l~g~a~DL~~~~~~~~~~v~i~-~~--~~--- 167 (442)
+.++|.|+||+|++|.+++..|+..+-. .+.+. +++.+. ++..+.++.... . .++.+. .| ++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~----~V~~~----~r~~~~~~~~~~~~l~~~~-~--~~v~~~~~D~~~~~~~ 75 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA----RVVLA----ALPDDPRRDAAVAQMKAAG-A--SSVEVIDFDALDTDSH 75 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC----eEEEE----eCCcchhHHHHHHHHHhcC-C--CceEEEEecCCChHHH
Confidence 4568999999999999999999987522 24442 444443 555555554321 0 012111 11 11
Q ss_pred ----cc---cCCCcEEEEeCCcCCCCCC---cH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ----EL---FEDAEWALLIGAKPRGPGM---ER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 ----ea---l~dADiVIi~ag~~~kpg~---~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+. ..+.|++|..+|....... +. .+.+..|.. +.+.+.+.+.+. ..+.|++++-
T Consensus 76 ~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~--~~~~iv~isS 146 (253)
T PRK07904 76 PKVIDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQ--GFGQIIAMSS 146 (253)
T ss_pred HHHHHHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 11 1379999987776432111 11 123566643 234566666653 3456666654
No 239
>PRK07454 short chain dehydrogenase; Provisional
Probab=94.21 E-value=0.78 Score=43.39 Aligned_cols=115 Identities=21% Similarity=0.173 Sum_probs=62.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc---
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e--- 168 (442)
+++++.|+||+|++|..++..|++.|. .|.+. +++.+.++....++.... .++.. ..| +++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~ 71 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW-----DLALV----ARSQDALEALAAELRSTG----VKAAAYSIDLSNPEAIA 71 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhCC----CcEEEEEccCCCHHHHH
Confidence 456899999999999999999998875 24442 445454444444343211 11211 111 111
Q ss_pred --------ccCCCcEEEEeCCcCCC-C--CCc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 --------LFEDAEWALLIGAKPRG-P--GME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 --------al~dADiVIi~ag~~~k-p--g~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|+||..+|.... + ..+ -...+..|.. +++.+.+.+.+. ..+.+++++..
T Consensus 72 ~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~isS~ 143 (241)
T PRK07454 72 PGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRAR--GGGLIINVSSI 143 (241)
T ss_pred HHHHHHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc--CCcEEEEEccH
Confidence 23458999998885431 1 111 1223444443 344444444442 34566666643
No 240
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.20 E-value=0.66 Score=44.60 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=46.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--cc------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY------ 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~------ 167 (442)
|+|.|+||+|++|..++..|+..|. .+.+ .+++.+.++....++.+.. ++. +..| +.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-----~~~~~~~Dv~d~~~~~~~ 66 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA-----RVVI----SSRNEENLEKALKELKEYG-----EVYAVKADLSDKDDLKNL 66 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhcC-----CceEEEcCCCCHHHHHHH
Confidence 5899999999999999999999874 2444 2455566665555554211 111 1111 11
Q ss_pred -----cccCCCcEEEEeCCcC
Q 013466 168 -----ELFEDAEWALLIGAKP 183 (442)
Q Consensus 168 -----eal~dADiVIi~ag~~ 183 (442)
+.+..-|++|..+|..
T Consensus 67 ~~~~~~~~g~id~li~naG~~ 87 (259)
T PRK08340 67 VKEAWELLGGIDALVWNAGNV 87 (259)
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 2245789999988853
No 241
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=94.20 E-value=0.17 Score=53.30 Aligned_cols=106 Identities=21% Similarity=0.253 Sum_probs=63.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+..+|+|+|| |.+|..++..|...|. ..|.+ .+++.+++...+.++.. .+....+..+.+.++|
T Consensus 181 ~~~~vlViGa-G~iG~~~a~~L~~~G~----~~V~v----~~r~~~ra~~la~~~g~-------~~~~~~~~~~~l~~aD 244 (423)
T PRK00045 181 SGKKVLVIGA-GEMGELVAKHLAEKGV----RKITV----ANRTLERAEELAEEFGG-------EAIPLDELPEALAEAD 244 (423)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHCCC----CeEEE----EeCCHHHHHHHHHHcCC-------cEeeHHHHHHHhccCC
Confidence 3469999995 9999999999987764 13555 35666666656554421 1111134457788999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l 228 (442)
+||.+.+.|. |-.+. ..++.. +...-....+++-+++|-|+=
T Consensus 245 vVI~aT~s~~-~~i~~--------~~l~~~---~~~~~~~~~vviDla~Prdid 286 (423)
T PRK00045 245 IVISSTGAPH-PIIGK--------GMVERA---LKARRHRPLLLVDLAVPRDIE 286 (423)
T ss_pred EEEECCCCCC-cEEcH--------HHHHHH---HhhccCCCeEEEEeCCCCCCc
Confidence 9999866432 11111 112221 111102467899999997654
No 242
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=94.19 E-value=0.14 Score=51.02 Aligned_cols=101 Identities=17% Similarity=0.334 Sum_probs=66.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|+.|| .|++|++++..|+..|. .+..+ |++.++.. +|++.- .++...+.|..++||+
T Consensus 35 ~~~iGFIG-LG~MG~~M~~nLik~G~-----kVtV~----dr~~~k~~----~f~~~G------a~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 35 KTRIGFIG-LGNMGSAMVSNLIKAGY-----KVTVY----DRTKDKCK----EFQEAG------ARVANSPAEVAEDSDV 94 (327)
T ss_pred cceeeEEe-eccchHHHHHHHHHcCC-----EEEEE----eCcHHHHH----HHHHhc------hhhhCCHHHHHhhcCE
Confidence 56999999 79999999999999886 36665 33434433 344332 2344457899999999
Q ss_pred EEEeCCcCC----------------CCCCcH-HhHHHHHHHHHHHHHHHHHhhhCCCeEEE
Q 013466 176 ALLIGAKPR----------------GPGMER-AGLLDINGQIFAEQGKALNAVASRNVKVI 219 (442)
Q Consensus 176 VIi~ag~~~----------------kpg~~r-~dll~~N~~Ii~~i~~~I~~~a~p~a~vi 219 (442)
||...+.|- .+|..- .|.-..-....++|.+.+.. .+++++
T Consensus 95 vitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~---~~~~~v 152 (327)
T KOG0409|consen 95 VITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN---KGGRFV 152 (327)
T ss_pred EEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh---CCCeEE
Confidence 998765431 122211 23334445678888888876 366763
No 243
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.18 E-value=0.6 Score=44.67 Aligned_cols=114 Identities=16% Similarity=0.045 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------ 166 (442)
..+|.|+||+|.+|..++..|+..|. .|.+. +++++.++....++.+.. .++.. ..| +
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~i~~~~----~~~~~~~~D~~~~~~~~~ 76 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA-----EVILN----GRDPAKLAAAAESLKGQG----LSAHALAFDVTDHDAVRA 76 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHHHHHhcC----ceEEEEEccCCCHHHHHH
Confidence 35899999999999999999998774 25542 445555554444443221 01111 111 1
Q ss_pred -----ccccCCCcEEEEeCCcCC-CCC--Cc---HHhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 -----YELFEDAEWALLIGAKPR-GPG--ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~-kpg--~~---r~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|+||..+|... .|- .+ -.+.+..|..- ++.+.+.+.+. ..+.+++++..
T Consensus 77 ~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~g~iv~iss~ 147 (255)
T PRK07523 77 AIDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIAR--GAGKIINIASV 147 (255)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--CCeEEEEEccc
Confidence 122345799999887542 111 11 12344566543 33344444332 34677777753
No 244
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.17 E-value=0.8 Score=47.56 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+.+||.|+||+|.||++++..|+..|.
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~ 85 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY 85 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 4467999999999999999999998774
No 245
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.13 E-value=1.1 Score=42.11 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++++|.|+||+|.+|..++..|++.|.
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~ 31 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA 31 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 356899999999999999999999875
No 246
>PRK06181 short chain dehydrogenase; Provisional
Probab=94.10 E-value=0.79 Score=43.96 Aligned_cols=74 Identities=22% Similarity=0.211 Sum_probs=45.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-C--ccc-----
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--PYE----- 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~--~~e----- 168 (442)
.+|.|+||+|++|..++..|+..+. .+.+. +++.+.++....++.... .++.+.. | +++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-----~Vi~~----~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~~~~ 68 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-----QLVLA----ARNETRLASLAQELADHG----GEALVVPTDVSDAEACERL 68 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHH
Confidence 4799999999999999999998774 24442 444455554444444321 1222221 1 121
Q ss_pred ------ccCCCcEEEEeCCcC
Q 013466 169 ------LFEDAEWALLIGAKP 183 (442)
Q Consensus 169 ------al~dADiVIi~ag~~ 183 (442)
.+.+.|+||.++|..
T Consensus 69 ~~~~~~~~~~id~vi~~ag~~ 89 (263)
T PRK06181 69 IEAAVARFGGIDILVNNAGIT 89 (263)
T ss_pred HHHHHHHcCCCCEEEECCCcc
Confidence 123689999988753
No 247
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.08 E-value=1.1 Score=42.18 Aligned_cols=26 Identities=27% Similarity=0.171 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+.+|.|+||+|+||..++..|+..|.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~ 30 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA 30 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 45899999999999999999998774
No 248
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.05 E-value=0.17 Score=51.64 Aligned_cols=79 Identities=11% Similarity=0.077 Sum_probs=47.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cc--hhhhHHHHHHHHhcccCCCcc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ER--SLQALEGVAMELEDSLFPLLR 158 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~--~~~~l~g~a~DL~~~~~~~~~ 158 (442)
..||.|||+ |++|+.++..|+..|+ + .|.|.|.|. |. ...+++..+..|.... +. .
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGv-g---~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in-p~-v 96 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGI-G---KLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN-SE-V 96 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-C---EEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC-CC-c
Confidence 358999995 9999999999999996 2 256644432 00 0124444444444332 21 1
Q ss_pred cEEEec------CcccccCCCcEEEEeCC
Q 013466 159 EVKIGI------NPYELFEDAEWALLIGA 181 (442)
Q Consensus 159 ~v~i~~------~~~eal~dADiVIi~ag 181 (442)
++.... +..+.++++|+||.+..
T Consensus 97 ~i~~~~~~~~~~~~~~~~~~~DlVid~~D 125 (338)
T PRK12475 97 EIVPVVTDVTVEELEELVKEVDLIIDATD 125 (338)
T ss_pred EEEEEeccCCHHHHHHHhcCCCEEEEcCC
Confidence 222211 12456899999998743
No 249
>PRK07774 short chain dehydrogenase; Provisional
Probab=94.05 E-value=0.61 Score=44.28 Aligned_cols=26 Identities=31% Similarity=0.183 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|.||.+++..|+..|.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~ 31 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA 31 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999999774
No 250
>PRK09186 flagellin modification protein A; Provisional
Probab=94.05 E-value=0.81 Score=43.57 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL 149 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~-----~v~~~----~r~~~~~~~~~~~l 48 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG-----IVIAA----DIDKEALNELLESL 48 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----ecChHHHHHHHHHH
Confidence 46899999999999999999998874 24442 44555666555555
No 251
>PRK06101 short chain dehydrogenase; Provisional
Probab=94.03 E-value=0.17 Score=48.13 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHH
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV 145 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~ 145 (442)
|.+|.|+||+|++|..++..|+..|. .+.+ .+++.++++..
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~-----~V~~----~~r~~~~~~~~ 41 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGW-----QVIA----CGRNQSVLDEL 41 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHH
Confidence 35799999999999999999998774 2544 24555555433
No 252
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.02 E-value=0.24 Score=49.48 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=48.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREVK 161 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v~ 161 (442)
.||.|+|+ |++|..++..|+..|+- .|.|+|.|. |....+++..+..|.... |. .++.
T Consensus 20 s~VLIvG~-gGLG~EiaKnLalaGVg----~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN-p~-V~V~ 92 (286)
T cd01491 20 SNVLISGL-GGLGVEIAKNLILAGVK----SVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-PY-VPVT 92 (286)
T ss_pred CcEEEEcC-CHHHHHHHHHHHHcCCC----eEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC-CC-CEEE
Confidence 59999995 99999999999999972 366654321 111234444444444332 32 2343
Q ss_pred EecC--cccccCCCcEEEEeC
Q 013466 162 IGIN--PYELFEDAEWALLIG 180 (442)
Q Consensus 162 i~~~--~~eal~dADiVIi~a 180 (442)
...+ +.+.+++.|+||.+.
T Consensus 93 ~~~~~~~~~~l~~fdvVV~~~ 113 (286)
T cd01491 93 VSTGPLTTDELLKFQVVVLTD 113 (286)
T ss_pred EEeccCCHHHHhcCCEEEEec
Confidence 3322 467899999998873
No 253
>PRK07832 short chain dehydrogenase; Provisional
Probab=94.02 E-value=0.99 Score=43.78 Aligned_cols=118 Identities=16% Similarity=0.117 Sum_probs=61.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc--ccEEEec---------C
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGI---------N 165 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~--~~v~i~~---------~ 165 (442)
+++.|+||+|++|..++..|+..|. .+.+. +++.+.++....++........ ....++. .
T Consensus 1 k~vlItGas~giG~~la~~la~~G~-----~vv~~----~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA-----ELFLT----DRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAAD 71 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHH
Confidence 3789999999999999999998774 24442 4444555555555542210000 0011110 0
Q ss_pred cccccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 166 PYELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 166 ~~eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
..+.+...|+||..+|...... .+. ...+..|..- .+.+.+.+.+. +..+.|++++-.
T Consensus 72 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~~~g~ii~isS~ 139 (272)
T PRK07832 72 IHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAA-GRGGHLVNVSSA 139 (272)
T ss_pred HHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCcEEEEEccc
Confidence 1123456899999888543111 121 2234445443 33333334332 234677777654
No 254
>PRK07890 short chain dehydrogenase; Provisional
Probab=94.00 E-value=0.86 Score=43.44 Aligned_cols=78 Identities=21% Similarity=0.175 Sum_probs=46.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcc--------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~-------- 167 (442)
.++|.|+||+|.||.+++..|+..|. .|.+. +++.+.++....++.... ....-+..-..+.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~ 74 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA-----DVVLA----ARTAERLDEVAAEIDDLG-RRALAVPTDITDEDQCANLVA 74 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHHHHHHhC-CceEEEecCCCCHHHHHHHHH
Confidence 46899999999999999999999885 25442 445555555555554211 0000011111111
Q ss_pred ---cccCCCcEEEEeCCcC
Q 013466 168 ---ELFEDAEWALLIGAKP 183 (442)
Q Consensus 168 ---eal~dADiVIi~ag~~ 183 (442)
+.+...|+||..+|..
T Consensus 75 ~~~~~~g~~d~vi~~ag~~ 93 (258)
T PRK07890 75 LALERFGRVDALVNNAFRV 93 (258)
T ss_pred HHHHHcCCccEEEECCccC
Confidence 2235689999988853
No 255
>PRK08618 ornithine cyclodeaminase; Validated
Probab=94.00 E-value=0.17 Score=51.28 Aligned_cols=76 Identities=16% Similarity=0.199 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
...+|+|||+ |.+|...+..++...-+ +.|.++ +++.++++..+.++.+.. + .++....+..+++++||
T Consensus 126 ~~~~v~iiGa-G~~a~~~~~al~~~~~~---~~v~v~----~r~~~~a~~~~~~~~~~~-~--~~~~~~~~~~~~~~~aD 194 (325)
T PRK08618 126 DAKTLCLIGT-GGQAKGQLEAVLAVRDI---ERVRVY----SRTFEKAYAFAQEIQSKF-N--TEIYVVNSADEAIEEAD 194 (325)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhcCCc---cEEEEE----CCCHHHHHHHHHHHHHhc-C--CcEEEeCCHHHHHhcCC
Confidence 3578999995 99998877766542222 235553 667788887777775321 2 23455555677899999
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+|+.+-.
T Consensus 195 iVi~aT~ 201 (325)
T PRK08618 195 IIVTVTN 201 (325)
T ss_pred EEEEccC
Confidence 9998643
No 256
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=94.00 E-value=0.17 Score=49.68 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=61.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--c----cccc
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--P----YELF 170 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~----~eal 170 (442)
||.|+||+|.+|.+++..|+..+.- -.+.+ ++........+ ...++... + .+.+. .| + .+++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~---~~v~~--~~~~~~~~~~~-~~~~~~~~--~---~~~~~~~Dl~~~~~~~~~~ 69 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPD---AEVIV--LDKLTYAGNLE-NLADLEDN--P---RYRFVKGDIGDRELVSRLF 69 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCC---CEEEE--ecCCCcchhhh-hhhhhccC--C---CcEEEEcCCcCHHHHHHHH
Confidence 5899999999999999999886521 01333 22110001111 11112111 0 11111 11 1 3445
Q ss_pred CC--CcEEEEeCCcCCC--CCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 171 ED--AEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 171 ~d--ADiVIi~ag~~~k--pg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++ +|+||.+++.... ....-...+..|..-...+++.+.+. ..+..++.++
T Consensus 70 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~i~~S 124 (317)
T TIGR01181 70 TEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKY-WHEFRFHHIS 124 (317)
T ss_pred hhcCCCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCceEEEee
Confidence 65 8999998874321 11223445677888888888887774 2455666655
No 257
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=93.99 E-value=0.21 Score=50.98 Aligned_cols=70 Identities=27% Similarity=0.388 Sum_probs=41.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVI 177 (442)
||+|+||+|.+|..++..|...+. . .+.|..+..+.+... ...+.. .+..+..-+.++++++|+||
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~h-p---~~~l~~~as~~~~g~----~~~~~~------~~~~~~~~~~~~~~~~D~v~ 66 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNF-P---IDKLVLLASDRSAGR----KVTFKG------KELEVNEAKIESFEGIDIAL 66 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCC-C---hhhEEEEeccccCCC----eeeeCC------eeEEEEeCChHHhcCCCEEE
Confidence 699999999999999999987543 1 234433322222111 111110 12333322356789999999
Q ss_pred EeCC
Q 013466 178 LIGA 181 (442)
Q Consensus 178 i~ag 181 (442)
++.|
T Consensus 67 ~a~g 70 (339)
T TIGR01296 67 FSAG 70 (339)
T ss_pred ECCC
Confidence 9876
No 258
>PRK09072 short chain dehydrogenase; Provisional
Probab=93.97 E-value=0.56 Score=45.16 Aligned_cols=74 Identities=19% Similarity=0.136 Sum_probs=45.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
..+|.|+||+|++|..++..|+..|. .|.+. +++.+.++....++.+. . ++.. ..| +.+
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~--~---~~~~~~~D~~d~~~~~~ 70 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA-----RLLLV----GRNAEKLEALAARLPYP--G---RHRWVVADLTSEAGREA 70 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHhcC--C---ceEEEEccCCCHHHHHH
Confidence 45899999999999999999998874 25442 44555555444444211 1 1211 111 111
Q ss_pred ------ccCCCcEEEEeCCcC
Q 013466 169 ------LFEDAEWALLIGAKP 183 (442)
Q Consensus 169 ------al~dADiVIi~ag~~ 183 (442)
.+...|+||..+|..
T Consensus 71 ~~~~~~~~~~id~lv~~ag~~ 91 (263)
T PRK09072 71 VLARAREMGGINVLINNAGVN 91 (263)
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 135689999998864
No 259
>PRK06128 oxidoreductase; Provisional
Probab=93.97 E-value=1.1 Score=44.29 Aligned_cols=117 Identities=15% Similarity=0.050 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------ 166 (442)
.++|.|+||+|+||.+++..|+..|. .+.+... +.....++.....+.... .++.. ..| +
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~-----~V~i~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v~~ 123 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA-----DIALNYL--PEEEQDAAEVVQLIQAEG----RKAVALPGDLKDEAFCRQ 123 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC-----EEEEEeC--CcchHHHHHHHHHHHHcC----CeEEEEecCCCCHHHHHH
Confidence 35899999999999999999998774 2444322 212222333333333211 11111 111 1
Q ss_pred -----ccccCCCcEEEEeCCcCC--CCC--Cc---HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 -----YELFEDAEWALLIGAKPR--GPG--ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~--kpg--~~---r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+...|++|..+|... .+. .+ -...+..|+.-...+.+.+..+...++.|++++.
T Consensus 124 ~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 124 LVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 122456899999988532 221 12 2334566655444455554443223457777664
No 260
>PLN00203 glutamyl-tRNA reductase
Probab=93.93 E-value=0.16 Score=54.75 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=48.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||+|||| |.+|..++..|...|. ..|.+ .+++.++++..+..+.... ..+....+..+++.++|+
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~----~~V~V----~nRs~era~~La~~~~g~~----i~~~~~~dl~~al~~aDV 332 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGC----TKMVV----VNRSEERVAALREEFPDVE----IIYKPLDEMLACAAEADV 332 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCC----CeEEE----EeCCHHHHHHHHHHhCCCc----eEeecHhhHHHHHhcCCE
Confidence 469999996 9999999999998774 23555 3667677776655442110 011112345678999999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
||.+-+
T Consensus 333 VIsAT~ 338 (519)
T PLN00203 333 VFTSTS 338 (519)
T ss_pred EEEccC
Confidence 988644
No 261
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.93 E-value=0.3 Score=50.04 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++||+|+||+|.+|..++..|...+.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~ 28 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPW 28 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCC
Confidence 57999999999999999999987554
No 262
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=93.91 E-value=0.19 Score=50.20 Aligned_cols=63 Identities=10% Similarity=0.128 Sum_probs=40.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+||| .|.+|..++..|+..|. ++.++ |++.. .+. +... . .....+..++.++||+|
T Consensus 1 m~Ig~IG-lG~MG~~ma~~L~~~G~-----~v~v~----~~~~~-~~~----~~~~--g----~~~~~s~~~~~~~advV 59 (292)
T PRK15059 1 MKLGFIG-LGIMGTPMAINLARAGH-----QLHVT----TIGPV-ADE----LLSL--G----AVSVETARQVTEASDII 59 (292)
T ss_pred CeEEEEc-cCHHHHHHHHHHHHCCC-----eEEEE----eCCHh-HHH----HHHc--C----CeecCCHHHHHhcCCEE
Confidence 4899999 59999999999999884 24443 22221 221 2111 1 22234456778999999
Q ss_pred EEeC
Q 013466 177 LLIG 180 (442)
Q Consensus 177 Ii~a 180 (442)
|++.
T Consensus 60 i~~v 63 (292)
T PRK15059 60 FIMV 63 (292)
T ss_pred EEeC
Confidence 9873
No 263
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=93.89 E-value=0.55 Score=46.94 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=33.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL 149 (442)
..+|.|+||+|+||.+++..|+..|. .|.+. +++.++++....++
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~-----~V~~~----~r~~~~~~~~~~~l 50 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGW-----HVIMA----CRNLKKAEAAAQEL 50 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHh
Confidence 45799999999999999999998873 25442 45555665555555
No 264
>PRK06197 short chain dehydrogenase; Provisional
Probab=93.87 E-value=0.64 Score=46.04 Aligned_cols=115 Identities=16% Similarity=0.115 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. .++.+.++....++.... + ..++.+ ..| +.
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~-----~vi~~----~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dl~d~~~v~~ 84 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGA-----HVVLA----VRNLDKGKAAAARITAAT-P-GADVTLQELDLTSLASVRA 84 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHHhC-C-CCceEEEECCCCCHHHHHH
Confidence 46899999999999999999999874 24442 344444444444443211 1 011221 111 11
Q ss_pred ------cccCCCcEEEEeCCcCCCCC-Cc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ------ELFEDAEWALLIGAKPRGPG-ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~kpg-~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|+||..+|....+. .+ -...+..|.. +.+.+.+.+.+. ..+.|++++.
T Consensus 85 ~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~--~~~~iV~vSS 152 (306)
T PRK06197 85 AADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV--PGSRVVTVSS 152 (306)
T ss_pred HHHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC--CCCEEEEECC
Confidence 12346899999887532111 11 1122444433 355666666653 3467777764
No 265
>PLN02712 arogenate dehydrogenase
Probab=93.87 E-value=0.61 Score=52.01 Aligned_cols=94 Identities=18% Similarity=0.105 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC-CC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~-dA 173 (442)
+++||+||| .|.||..++..|...|. .|..+ |++... + .+.++ . +....+..+.+. ++
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~~G~-----~V~~~----dr~~~~-~-~a~~~-----G----v~~~~~~~el~~~~a 426 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVKQGH-----TVLAY----SRSDYS-D-EAQKL-----G----VSYFSDADDLCEEHP 426 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHHCcC-----EEEEE----ECChHH-H-HHHHc-----C----CeEeCCHHHHHhcCC
Confidence 468999999 59999999999998663 24443 333221 1 12211 1 122333344454 59
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
|+||++.-. ....+++.++.. ....++++++-++.-
T Consensus 427 DvVILavP~------------~~~~~vi~~l~~---~~lk~g~ivvDv~Sv 462 (667)
T PLN02712 427 EVILLCTSI------------LSTEKVLKSLPF---QRLKRSTLFVDVLSV 462 (667)
T ss_pred CEEEECCCh------------HHHHHHHHHHHH---hcCCCCcEEEECCCc
Confidence 999998331 112334444321 122467888877654
No 266
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=93.80 E-value=1.2 Score=42.33 Aligned_cols=118 Identities=19% Similarity=0.140 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc--ccEEEecCc------
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINP------ 166 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~--~~v~i~~~~------ 166 (442)
+.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.+.....++.+...... ....+...+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~-----~Vi~~----~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 81 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGA-----TVILL----GRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQ 81 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----cEEEE----eCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHH
Confidence 456899999999999999999998774 24442 4455555556556653321100 001111001
Q ss_pred -----ccccCCCcEEEEeCCcCC--CC--CCcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 -----YELFEDAEWALLIGAKPR--GP--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~--kp--g~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+...|+||..+|... .+ ..+. ...+..|..- .+.+.+.+.+ .+.+.|++++.
T Consensus 82 ~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~--~~~~~iv~~ss 152 (247)
T PRK08945 82 LADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLK--SPAASLVFTSS 152 (247)
T ss_pred HHHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHh--CCCCEEEEEcc
Confidence 123346899999887532 22 1222 2234455432 3333334444 24566666665
No 267
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=93.79 E-value=0.22 Score=48.90 Aligned_cols=100 Identities=23% Similarity=0.223 Sum_probs=58.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC-cEE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA-EWA 176 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA-DiV 176 (442)
+|.|+||+|.||++++..|++.|. .+... ++......... .+..+.. ....-.....+.+++. |.|
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~~~---~~~~~~~-~d~~~~~~~~~~~~~~~d~v 68 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH-----DVRGL----DRLRDGLDPLL---SGVEFVV-LDLTDRDLVDELAKGVPDAV 68 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC-----eEEEE----eCCCccccccc---cccceee-ecccchHHHHHHHhcCCCEE
Confidence 499999999999999999999754 23332 22222111110 0000000 0000001123455566 999
Q ss_pred EEeCCcCCCCCCcH---HhHHHHHHHHHHHHHHHHHh
Q 013466 177 LLIGAKPRGPGMER---AGLLDINGQIFAEQGKALNA 210 (442)
Q Consensus 177 Ii~ag~~~kpg~~r---~dll~~N~~Ii~~i~~~I~~ 210 (442)
|..++....++..+ .++...|..-.+.+.++..+
T Consensus 69 ih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~ 105 (314)
T COG0451 69 IHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARA 105 (314)
T ss_pred EEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 99888655444432 34788999999999988887
No 268
>PRK12747 short chain dehydrogenase; Provisional
Probab=93.79 E-value=1.3 Score=42.32 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+++.|+||+|+||.+++..|+..|.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~ 29 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA 29 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999999874
No 269
>PRK06182 short chain dehydrogenase; Validated
Probab=93.75 E-value=0.24 Score=48.13 Aligned_cols=110 Identities=14% Similarity=0.053 Sum_probs=59.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccc-------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE------- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~e------- 168 (442)
.++|.|+||+|++|.+++..|+..|. .+.+ .+++.+++.....+ .. .. ....+ .+.+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~l~~~~~~---~~-~~-~~~Dv--~~~~~~~~~~~ 66 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY-----TVYG----AARRVDKMEDLASL---GV-HP-LSLDV--TDEASIKAAVD 66 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHhC---CC-eE-EEeeC--CCHHHHHHHHH
Confidence 45899999999999999999998774 2443 24444544432210 00 00 01111 1111
Q ss_pred ----ccCCCcEEEEeCCcCCC-C--CC---cHHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 ----LFEDAEWALLIGAKPRG-P--GM---ERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 ----al~dADiVIi~ag~~~k-p--g~---~r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
...+.|++|..+|.... + .. +-...+..|.. +++.+.+.+++. ..+.+++++.
T Consensus 67 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~--~~g~iv~isS 133 (273)
T PRK06182 67 TIIAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQ--RSGRIINISS 133 (273)
T ss_pred HHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhc--CCCEEEEEcc
Confidence 12378999998885421 1 11 12233445543 355555666553 2456666664
No 270
>PRK09291 short chain dehydrogenase; Provisional
Probab=93.74 E-value=1.1 Score=42.78 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|+||..++..|+..|.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~ 27 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH 27 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 4799999999999999999998874
No 271
>PRK06141 ornithine cyclodeaminase; Validated
Probab=93.74 E-value=0.23 Score=50.16 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
...+|+|||+ |.+|...+..+.. .+. +.|.++ +++.++++..+.++.+. . .++....+..+++++|
T Consensus 124 ~~~~v~iiG~-G~~a~~~~~al~~~~~~----~~V~V~----~Rs~~~a~~~a~~~~~~--g--~~~~~~~~~~~av~~a 190 (314)
T PRK06141 124 DASRLLVVGT-GRLASLLALAHASVRPI----KQVRVW----GRDPAKAEALAAELRAQ--G--FDAEVVTDLEAAVRQA 190 (314)
T ss_pred CCceEEEECC-cHHHHHHHHHHHhcCCC----CEEEEE----cCCHHHHHHHHHHHHhc--C--CceEEeCCHHHHHhcC
Confidence 3579999995 9999999886665 442 235553 67778888888777532 1 1355555667799999
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+|+.+..
T Consensus 191 DIVi~aT~ 198 (314)
T PRK06141 191 DIISCATL 198 (314)
T ss_pred CEEEEeeC
Confidence 99976533
No 272
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=93.71 E-value=1.7 Score=42.58 Aligned_cols=67 Identities=27% Similarity=0.335 Sum_probs=39.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||+|+|++|.+|..++..+...+-+ +.+.+. |++.++.... .. ..+..+.+..+.++++|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~---elvav~----d~~~~~~~~~------~~----~~i~~~~dl~~ll~~~Dv 63 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDL---ELVAAV----DRPGSPLVGQ------GA----LGVAITDDLEAVLADADV 63 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCC---EEEEEE----ecCCcccccc------CC----CCccccCCHHHhccCCCE
Confidence 579999997799999999888764322 112232 3333332211 11 123334444556678999
Q ss_pred EEEe
Q 013466 176 ALLI 179 (442)
Q Consensus 176 VIi~ 179 (442)
||..
T Consensus 64 Vid~ 67 (257)
T PRK00048 64 LIDF 67 (257)
T ss_pred EEEC
Confidence 9865
No 273
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=93.71 E-value=0.23 Score=46.47 Aligned_cols=111 Identities=18% Similarity=0.109 Sum_probs=64.0
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHH-HHhcccCCCcccEEEecCcccccCCC--cE
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-ELEDSLFPLLREVKIGINPYELFEDA--EW 175 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~-DL~~~~~~~~~~v~i~~~~~eal~dA--Di 175 (442)
|.|+||+|.||+.++..|...+.. .+.+ ...+ . ........ ++......+ .-.....+.+++. |.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~----v~~~--~~~~-~-~~~~~~~~~~~~~~~~dl----~~~~~~~~~~~~~~~d~ 68 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHE----VIVL--SRSS-N-SESFEEKKLNVEFVIGDL----TDKEQLEKLLEKANIDV 68 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTE----EEEE--ESCS-T-GGHHHHHHTTEEEEESET----TSHHHHHHHHHHHTESE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCc----cccc--cccc-c-ccccccccceEEEEEeec----cccccccccccccCceE
Confidence 789999999999999999998852 1222 2112 1 11111110 111000000 0001123455555 99
Q ss_pred EEEeCCcCCC--CCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 176 ALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 176 VIi~ag~~~k--pg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
||.+++.+.. ....-.+.+..|......+.+.+.+.. . ..++.++.
T Consensus 69 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~~i~~sS 116 (236)
T PF01370_consen 69 VIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAG-V-KRFIFLSS 116 (236)
T ss_dssp EEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-T-SEEEEEEE
T ss_pred EEEeecccccccccccccccccccccccccccccccccc-c-cccccccc
Confidence 9999886431 112456778889999999999999863 3 46666654
No 274
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=93.70 E-value=0.34 Score=47.72 Aligned_cols=96 Identities=19% Similarity=0.146 Sum_probs=62.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccc-cCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL-FEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~ea-l~dADi 175 (442)
+||+|||. |.||..++..|..+... .+.|..+ .+++.++.+..+. . +.+..+..+- ....|+
T Consensus 3 ~rvgiIG~-GaIG~~va~~l~~~~~~----~~~l~~V-~~~~~~~~~~~~~----~-------~~~~~~l~~ll~~~~Dl 65 (267)
T PRK13301 3 HRIAFIGL-GAIASDVAAGLLADAAQ----PCQLAAL-TRNAADLPPALAG----R-------VALLDGLPGLLAWRPDL 65 (267)
T ss_pred eEEEEECc-cHHHHHHHHHHhcCCCC----ceEEEEE-ecCCHHHHHHhhc----c-------CcccCCHHHHhhcCCCE
Confidence 69999995 99999999998776432 1333333 3444444443321 1 1233333332 478999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
||-+|+ .+.+++++..+-+. +.|.+++-++==.|
T Consensus 66 VVE~A~----------------~~av~e~~~~iL~~-g~dlvv~SvGALaD 99 (267)
T PRK13301 66 VVEAAG----------------QQAIAEHAEGCLTA-GLDMIICSAGALAD 99 (267)
T ss_pred EEECCC----------------HHHHHHHHHHHHhc-CCCEEEEChhHhcC
Confidence 999998 58899999988875 46777766665454
No 275
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=93.69 E-value=0.85 Score=43.64 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=62.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ec--Cccc-----
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYE----- 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~--~~~e----- 168 (442)
.+|.|+||+|.||.+++..|++.|. .+.+. +++...++....++.... .. .++.. .. .+.+
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~-----~vi~~----~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~i~~~ 71 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY-----RVAVA----DINSEKAANVAQEINAEY-GE-GMAYGFGADATSEQSVLAL 71 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHHhc-CC-ceeEEEEccCCCHHHHHHH
Confidence 3699999999999999999999874 24442 444444544444443211 00 01111 11 1111
Q ss_pred ------ccCCCcEEEEeCCcCCCCC---CcHH---hHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 ------LFEDAEWALLIGAKPRGPG---MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 ------al~dADiVIi~ag~~~kpg---~~r~---dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|+||..+|.+.... .+.. ..+..|.. +++.+.+.+.+. +.++.+++++..
T Consensus 72 ~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~~~~~iv~~ss~ 142 (259)
T PRK12384 72 SRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRD-GIQGRIIQINSK 142 (259)
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhC-CCCcEEEEecCc
Confidence 1246799999988654221 1222 22334433 344555555543 235677777664
No 276
>PRK07109 short chain dehydrogenase; Provisional
Probab=93.68 E-value=1.1 Score=45.31 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=63.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--ccc-----
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE----- 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~e----- 168 (442)
.+|.|+||+|+||..++..|+..|. .+.+ .+++.+.++....++.... .++. +..| +.+
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~-----~Vvl----~~R~~~~l~~~~~~l~~~g----~~~~~v~~Dv~d~~~v~~~ 75 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGA-----KVVL----LARGEEGLEALAAEIRAAG----GEALAVVADVADAEAVQAA 75 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHHH
Confidence 5899999999999999999999874 2544 2555666666665554221 1121 1111 222
Q ss_pred ------ccCCCcEEEEeCCcCC-CC--CCcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 ------LFEDAEWALLIGAKPR-GP--GMER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 ------al~dADiVIi~ag~~~-kp--g~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...|++|..+|... .+ ..+. ...+..| ....+.+.+.+.+. ..+.|++++.
T Consensus 76 ~~~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~--~~g~iV~isS 144 (334)
T PRK07109 76 ADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPR--DRGAIIQVGS 144 (334)
T ss_pred HHHHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEeCC
Confidence 2346899999887532 11 1111 1223333 33445555555552 3466777664
No 277
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.65 E-value=0.35 Score=46.99 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..||.|+|+ |++|+.++..|+..|+
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gv 48 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGV 48 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999996
No 278
>PRK05717 oxidoreductase; Validated
Probab=93.63 E-value=0.17 Score=48.62 Aligned_cols=26 Identities=27% Similarity=-0.005 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|+||.+++..|+..|.
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~ 35 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGW 35 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC
Confidence 35899999999999999999998774
No 279
>PRK08223 hypothetical protein; Validated
Probab=93.59 E-value=0.24 Score=49.37 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEec
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (442)
..||.|||+ |++|+.++..|+..|+- .|.|.|.
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGVG----~i~lvD~ 59 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGIG----KFTIADF 59 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCCC----eEEEEeC
Confidence 359999996 99999999999999972 2555443
No 280
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.58 E-value=0.23 Score=50.76 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=27.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG 134 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d 134 (442)
..||.|||| |++|+.++..|+..|+ + .|.|+|.|
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGv-g---~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGV-G---KVTIVDRD 57 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-C---eEEEEeCC
Confidence 469999996 9999999999999996 2 36665543
No 281
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=93.57 E-value=0.16 Score=53.15 Aligned_cols=73 Identities=25% Similarity=0.278 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+..||.|||| |-+|.-++..|...|+. .|.+ .+++.++++.+|.++. . .+.-..+..+.+.++|
T Consensus 177 ~~~~vlvIGA-Gem~~lva~~L~~~g~~----~i~I----aNRT~erA~~La~~~~-~------~~~~l~el~~~l~~~D 240 (414)
T COG0373 177 KDKKVLVIGA-GEMGELVAKHLAEKGVK----KITI----ANRTLERAEELAKKLG-A------EAVALEELLEALAEAD 240 (414)
T ss_pred ccCeEEEEcc-cHHHHHHHHHHHhCCCC----EEEE----EcCCHHHHHHHHHHhC-C------eeecHHHHHHhhhhCC
Confidence 3468999996 99999999999999973 2554 4788888888877776 1 2222345688999999
Q ss_pred EEEEeCCcC
Q 013466 175 WALLIGAKP 183 (442)
Q Consensus 175 iVIi~ag~~ 183 (442)
+||.+-+.|
T Consensus 241 vVissTsa~ 249 (414)
T COG0373 241 VVISSTSAP 249 (414)
T ss_pred EEEEecCCC
Confidence 999976655
No 282
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=93.54 E-value=0.43 Score=46.97 Aligned_cols=110 Identities=17% Similarity=0.120 Sum_probs=60.1
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccc----ccCCCc
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----LFEDAE 174 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~e----al~dAD 174 (442)
|.|+||+|.||++++..|...+.. .+.+. +.......+.. +.... ....+........ .+.+.|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~----~v~~~--~~~~~~~~~~~----~~~~~--~~~d~~~~~~~~~~~~~~~~~~D 68 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT----DILVV--DNLRDGHKFLN----LADLV--IADYIDKEDFLDRLEKGAFGKIE 68 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc----eEEEE--ecCCCchhhhh----hhhee--eeccCcchhHHHHHHhhccCCCC
Confidence 579999999999999999988741 14332 11111111111 11000 0000110000111 235799
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+||..|+.+.....+.......|..-...+.+.+.+. + ..++.+|.
T Consensus 69 ~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~--~~~v~~SS 114 (314)
T TIGR02197 69 AIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEK-G--IPFIYASS 114 (314)
T ss_pred EEEECccccCccccchHHHHHHHHHHHHHHHHHHHHh-C--CcEEEEcc
Confidence 9999988543222344556778888888888887774 2 34665653
No 283
>PRK06138 short chain dehydrogenase; Provisional
Probab=93.54 E-value=0.93 Score=42.98 Aligned_cols=26 Identities=19% Similarity=0.008 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..+|.|+||+|.||++++..|+..|.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~ 30 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA 30 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC
Confidence 45899999999999999999998774
No 284
>PRK07985 oxidoreductase; Provisional
Probab=93.54 E-value=0.9 Score=44.98 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=23.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++.|+||+|+||.+++..|+..|.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~ 74 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGA 74 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC
Confidence 5899999999999999999999874
No 285
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=93.52 E-value=0.45 Score=48.73 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=22.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+||+|+||+|.+|..++..|...+.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~ 25 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE 25 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC
Confidence 5899999999999999999987644
No 286
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=93.52 E-value=0.28 Score=49.55 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=56.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c----cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P----YE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~----~e 168 (442)
|+||.|+||+|.||++++..|+..|. +.+.+. ++.... +....+.+.. .. .++.+ ..| + .+
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~----~~v~~~----~~~~~~--~~~~~~~~~~-~~-~~~~~~~~Dl~d~~~~~~ 68 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETS----DAVVVV----DKLTYA--GNLMSLAPVA-QS-ERFAFEKVDICDRAELAR 68 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCC----CEEEEE----ecCccc--cchhhhhhcc-cC-CceEEEECCCcChHHHHH
Confidence 46899999999999999999998774 123332 211110 0001111100 00 01111 111 1 23
Q ss_pred ccC--CCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHh
Q 013466 169 LFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNA 210 (442)
Q Consensus 169 al~--dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~ 210 (442)
.++ +.|+||.++|..... .......+..|..-...+.+.+.+
T Consensus 69 ~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~ 114 (355)
T PRK10217 69 VFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARA 114 (355)
T ss_pred HHhhcCCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHH
Confidence 344 389999998854321 112345667788777777777665
No 287
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=93.51 E-value=0.17 Score=47.60 Aligned_cols=33 Identities=9% Similarity=0.031 Sum_probs=26.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEec
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (442)
..||.|+|+ |++|+.++..|+..|+- .|.|.|.
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~GVg----~i~lvD~ 53 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSGIG----SLTILDD 53 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcCCC----EEEEEEC
Confidence 359999995 99999999999999972 3666543
No 288
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=93.51 E-value=0.56 Score=42.53 Aligned_cols=76 Identities=17% Similarity=0.043 Sum_probs=46.0
Q ss_pred CCEEEEEcC-CCchHHHHHHHHHHcCCCCCCCceEEEeccccchh--h--hHHHHHHHHhcccCCCcccEEEecCccccc
Q 013466 96 MVNIAVSGA-AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--Q--ALEGVAMELEDSLFPLLREVKIGINPYELF 170 (442)
Q Consensus 96 ~~KI~IIGA-~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~--~--~l~g~a~DL~~~~~~~~~~v~i~~~~~eal 170 (442)
..||++||- -++|..+++..+..-|. .++++...... . ..-..+.+..... ..+++++.+..+++
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~-------~~~~~~P~~~~~~~~~~~~~~~~~~~~~~---g~~i~~~~~~~e~l 71 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGM-------EVVLIAPEGLRYPPDPEVLEKAKKNAKKN---GGKITITDDIEEAL 71 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTS-------EEEEESSGGGGGSHHHHHHHHHHHHHHHH---TTEEEEESSHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCC-------EEEEECCCcccCCCCHHHHHHHHHHHHHh---CCCeEEEeCHHHhc
Confidence 469999994 37999999999998664 24433322210 1 1111222221111 13678887778999
Q ss_pred CCCcEEEEeCC
Q 013466 171 EDAEWALLIGA 181 (442)
Q Consensus 171 ~dADiVIi~ag 181 (442)
++||+|....-
T Consensus 72 ~~aDvvy~~~~ 82 (158)
T PF00185_consen 72 KGADVVYTDRW 82 (158)
T ss_dssp TT-SEEEEESS
T ss_pred CCCCEEEEcCc
Confidence 99999988744
No 289
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.50 E-value=0.85 Score=43.47 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
..+|.|+||+|.||..++..|+..|. .+.+. +++.+.++....++.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~ 52 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA-----KVVVA----DRDAAGGEETVALIR 52 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 46899999999999999999998774 25452 455555555554553
No 290
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=93.50 E-value=0.27 Score=49.36 Aligned_cols=74 Identities=18% Similarity=0.162 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
...+++|||+ |..|...+..++.-.-+ +.|.++ +++.++++..+.++.+.. ..++.+..+..+++++||
T Consensus 116 da~~l~iiGa-G~QA~~~~~a~~~v~~i---~~v~v~----~r~~~~a~~f~~~~~~~~---~~~v~~~~~~~eav~~aD 184 (301)
T PRK06407 116 NVENFTIIGS-GFQAETQLEGMASVYNP---KRIRVY----SRNFDHARAFAERFSKEF---GVDIRPVDNAEAALRDAD 184 (301)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhcCCC---CEEEEE----CCCHHHHHHHHHHHHHhc---CCcEEEeCCHHHHHhcCC
Confidence 4579999995 99999877777763323 346563 667788888888877531 125666677889999999
Q ss_pred EEEEe
Q 013466 175 WALLI 179 (442)
Q Consensus 175 iVIi~ 179 (442)
+|+.+
T Consensus 185 IV~ta 189 (301)
T PRK06407 185 TITSI 189 (301)
T ss_pred EEEEe
Confidence 99875
No 291
>PRK06482 short chain dehydrogenase; Provisional
Probab=93.49 E-value=0.3 Score=47.45 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|+||++++..|+..|.
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~ 27 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD 27 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC
Confidence 4799999999999999999998874
No 292
>PRK05867 short chain dehydrogenase; Provisional
Probab=93.46 E-value=1.5 Score=41.92 Aligned_cols=75 Identities=19% Similarity=0.148 Sum_probs=47.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------ 166 (442)
..++.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.+.. .++.. ..| +
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~ 75 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA-----QVAIA----ARHLDALEKLADEIGTSG----GKVVPVCCDVSQHQQVTS 75 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----cCCHHHHHHHHHHHHhcC----CeEEEEEccCCCHHHHHH
Confidence 35799999999999999999999875 25552 445566665655554321 11111 111 1
Q ss_pred -----ccccCCCcEEEEeCCcC
Q 013466 167 -----YELFEDAEWALLIGAKP 183 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~ 183 (442)
.+.+...|++|..+|..
T Consensus 76 ~~~~~~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 76 MLDQVTAELGGIDIAVCNAGII 97 (253)
T ss_pred HHHHHHHHhCCCCEEEECCCCC
Confidence 12235789999988754
No 293
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=93.43 E-value=0.55 Score=44.67 Aligned_cols=111 Identities=13% Similarity=0.152 Sum_probs=60.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cccc-----
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL----- 169 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~ea----- 169 (442)
++.|+||+|.||.+++..|++.|. .+.+. +++.+.++....++.... .++.. ..| +.+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~-----~v~~~----~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~i~~~~ 68 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF-----AVAVA----DLNEETAKETAKEINQAG----GKAVAYKLDVSDKDQVFSAI 68 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCHHHHHHHH
Confidence 688999999999999999999874 24442 334444554444444221 11221 111 1222
Q ss_pred ------cCCCcEEEEeCCcCC-CC--CCcHH---hHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeC
Q 013466 170 ------FEDAEWALLIGAKPR-GP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 170 ------l~dADiVIi~ag~~~-kp--g~~r~---dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+...|+||..+|... .+ ..+.. ..+..|.. +++.+.+.+.+. +..+.+++++
T Consensus 69 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~~iv~~s 136 (254)
T TIGR02415 69 DQAAEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQ-GHGGKIINAA 136 (254)
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhC-CCCeEEEEec
Confidence 345799999887532 12 22222 22444432 334445555553 2446666665
No 294
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=93.42 E-value=0.44 Score=48.22 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++||+|+||+|.+|..+...|...+.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~ 27 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSD 27 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCC
Confidence 57999999999999999999998774
No 295
>PRK05993 short chain dehydrogenase; Provisional
Probab=93.38 E-value=0.24 Score=48.40 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+.+|.|+||+|++|.+++..|+..|.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~ 29 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW 29 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 35799999999999999999998774
No 296
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=93.38 E-value=0.29 Score=49.64 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
...+++|||+ |..|...+..|+. .++ +.|.++ +++.++++..+.++.+.. + .++....+..+++.+|
T Consensus 128 ~~~~v~iiGa-G~qA~~~~~al~~~~~i----~~v~V~----~R~~~~a~~~a~~~~~~~-g--~~v~~~~~~~~av~~a 195 (326)
T TIGR02992 128 DSSVVAIFGA-GMQARLQLEALTLVRDI----RSARIW----ARDSAKAEALALQLSSLL-G--IDVTAATDPRAAMSGA 195 (326)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHhCCc----cEEEEE----CCCHHHHHHHHHHHHhhc-C--ceEEEeCCHHHHhccC
Confidence 3569999995 9999998888874 442 235553 677788888887775321 1 2344555567789999
Q ss_pred cEEEEeC
Q 013466 174 EWALLIG 180 (442)
Q Consensus 174 DiVIi~a 180 (442)
|+|+.+-
T Consensus 196 DiVvtaT 202 (326)
T TIGR02992 196 DIIVTTT 202 (326)
T ss_pred CEEEEec
Confidence 9999863
No 297
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=93.38 E-value=0.25 Score=49.94 Aligned_cols=73 Identities=26% Similarity=0.201 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
...+++|||+ |..+..-+..++.-.-+ +.|.++ +++.++++..+.++++ . ...+....+..+++++||
T Consensus 127 ~~~~l~viGa-G~QA~~~~~a~~~~~~i---~~v~v~----~r~~~~~~~~~~~~~~-~---~~~v~~~~~~~~av~~aD 194 (313)
T PF02423_consen 127 DARTLGVIGA-GVQARWHLRALAAVRPI---KEVRVY----SRSPERAEAFAARLRD-L---GVPVVAVDSAEEAVRGAD 194 (313)
T ss_dssp T--EEEEE---SHHHHHHHHHHHHHS-----SEEEEE-----SSHHHHHHHHHHHHC-C---CTCEEEESSHHHHHTTSS
T ss_pred CCceEEEECC-CHHHHHHHHHHHHhCCc---eEEEEE----ccChhHHHHHHHhhcc-c---cccceeccchhhhcccCC
Confidence 3579999995 99999877766643223 346663 6777888989998886 2 235777777889999999
Q ss_pred EEEEe
Q 013466 175 WALLI 179 (442)
Q Consensus 175 iVIi~ 179 (442)
+|+.+
T Consensus 195 ii~ta 199 (313)
T PF02423_consen 195 IIVTA 199 (313)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 98875
No 298
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=93.37 E-value=0.2 Score=49.83 Aligned_cols=71 Identities=17% Similarity=0.048 Sum_probs=48.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-Ee--cCcccccCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IG--INPYELFED 172 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~--~~~~eal~d 172 (442)
..+|.|||| |++|.++++.|...|.- .|.+ .+|+.++++.++.++.... .+. +. .+..+.+.+
T Consensus 125 ~k~vlvlGa-GGaarai~~aL~~~G~~----~i~I----~nRt~~ka~~La~~~~~~~-----~~~~~~~~~~~~~~~~~ 190 (282)
T TIGR01809 125 GFRGLVIGA-GGTSRAAVYALASLGVT----DITV----INRNPDKLSRLVDLGVQVG-----VITRLEGDSGGLAIEKA 190 (282)
T ss_pred CceEEEEcC-cHHHHHHHHHHHHcCCC----eEEE----EeCCHHHHHHHHHHhhhcC-----cceeccchhhhhhcccC
Confidence 458999995 99999999999988852 3655 3677788887776654221 111 11 112356688
Q ss_pred CcEEEEeC
Q 013466 173 AEWALLIG 180 (442)
Q Consensus 173 ADiVIi~a 180 (442)
+|+||.+-
T Consensus 191 ~DiVInaT 198 (282)
T TIGR01809 191 AEVLVSTV 198 (282)
T ss_pred CCEEEECC
Confidence 99999863
No 299
>PRK06940 short chain dehydrogenase; Provisional
Probab=93.36 E-value=0.91 Score=44.37 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=44.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC-cccEEEecCc---c------
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINP---Y------ 167 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~-~~~v~i~~~~---~------ 167 (442)
.+.|.| +|+||.+++..|. .|. .|.+. +++.+.++....++.+..... .....++ +. .
T Consensus 4 ~~lItG-a~gIG~~la~~l~-~G~-----~Vv~~----~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~-d~~~i~~~~~~~ 71 (275)
T PRK06940 4 VVVVIG-AGGIGQAIARRVG-AGK-----KVLLA----DYNEENLEAAAKTLREAGFDVSTQEVDVS-SRESVKALAATA 71 (275)
T ss_pred EEEEEC-CChHHHHHHHHHh-CCC-----EEEEE----eCCHHHHHHHHHHHHhcCCeEEEEEeecC-CHHHHHHHHHHH
Confidence 344555 5999999999985 442 25553 444455554444443211000 0011111 10 0
Q ss_pred cccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHH
Q 013466 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQI 200 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kpg~~r~dll~~N~~I 200 (442)
+.+...|++|..+|... +..+-...+..|..-
T Consensus 72 ~~~g~id~li~nAG~~~-~~~~~~~~~~vN~~g 103 (275)
T PRK06940 72 QTLGPVTGLVHTAGVSP-SQASPEAILKVDLYG 103 (275)
T ss_pred HhcCCCCEEEECCCcCC-chhhHHHHHHHhhHH
Confidence 11346899999988642 112223445566443
No 300
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=93.35 E-value=0.39 Score=41.07 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
||+|+|++|.+|..++..|....-
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~ 24 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPD 24 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCC
Confidence 689999889999999998888643
No 301
>PRK08251 short chain dehydrogenase; Provisional
Probab=93.35 E-value=1.6 Score=41.33 Aligned_cols=77 Identities=19% Similarity=0.222 Sum_probs=47.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec---Cc-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---NP------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~---~~------- 166 (442)
.++.|+||+|++|.+++..|+..+. .+.+. +++.+++.....++.... + ..++.+.. .+
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~-----~v~~~----~r~~~~~~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~ 71 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR-----DLALC----ARRTDRLEELKAELLARY-P-GIKVAVAALDVNDHDQVFEV 71 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHHHHHhhC-C-CceEEEEEcCCCCHHHHHHH
Confidence 4799999999999999999998773 25442 445555555555544221 1 01222211 11
Q ss_pred ----ccccCCCcEEEEeCCcCC
Q 013466 167 ----YELFEDAEWALLIGAKPR 184 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~ 184 (442)
.+.+...|+||..+|...
T Consensus 72 ~~~~~~~~~~id~vi~~ag~~~ 93 (248)
T PRK08251 72 FAEFRDELGGLDRVIVNAGIGK 93 (248)
T ss_pred HHHHHHHcCCCCEEEECCCcCC
Confidence 123456899999988643
No 302
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.35 E-value=0.32 Score=47.40 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..||.|+|+ |++|+.++..|+..|+
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gv 56 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGV 56 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCC
Confidence 469999996 9999999999999996
No 303
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.33 E-value=0.3 Score=46.19 Aligned_cols=68 Identities=15% Similarity=0.098 Sum_probs=40.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE--ecCcccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i--~~~~~eal~dA 173 (442)
..||.|||+ |.||...+..|...|- .|.+. .-+.. +.+. ++.+.. .+.. ..-.++.+.++
T Consensus 10 ~k~vLVIGg-G~va~~ka~~Ll~~ga-----~V~VI--s~~~~-~~l~----~l~~~~-----~i~~~~~~~~~~~l~~a 71 (202)
T PRK06718 10 NKRVVIVGG-GKVAGRRAITLLKYGA-----HIVVI--SPELT-ENLV----KLVEEG-----KIRWKQKEFEPSDIVDA 71 (202)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----eEEEE--cCCCC-HHHH----HHHhCC-----CEEEEecCCChhhcCCc
Confidence 469999996 9999999999998773 25552 21211 1122 222111 1222 22246689999
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+||.+-+
T Consensus 72 dlViaaT~ 79 (202)
T PRK06718 72 FLVIAATN 79 (202)
T ss_pred eEEEEcCC
Confidence 99888744
No 304
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=93.31 E-value=0.44 Score=48.77 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
|+||+|+||+|.+|..++..|...+.
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~ 27 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPE 27 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCC
Confidence 57999999999999999999986543
No 305
>PRK06139 short chain dehydrogenase; Provisional
Probab=93.30 E-value=0.87 Score=46.17 Aligned_cols=75 Identities=17% Similarity=0.077 Sum_probs=48.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
..+|.|+||+|+||..++..|+..|. .+.+ .+++++.++....++.... .++.+ ..| +.+
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~-----~Vvl----~~R~~~~l~~~~~~~~~~g----~~~~~~~~Dv~d~~~v~~ 73 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA-----RLVL----AARDEEALQAVAEECRALG----AEVLVVPTDVTDADQVKA 73 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEEeeCCCHHHHHH
Confidence 35899999999999999999999874 2544 2556677776666654321 11211 111 111
Q ss_pred -------ccCCCcEEEEeCCcC
Q 013466 169 -------LFEDAEWALLIGAKP 183 (442)
Q Consensus 169 -------al~dADiVIi~ag~~ 183 (442)
.+...|++|..+|..
T Consensus 74 ~~~~~~~~~g~iD~lVnnAG~~ 95 (330)
T PRK06139 74 LATQAASFGGRIDVWVNNVGVG 95 (330)
T ss_pred HHHHHHHhcCCCCEEEECCCcC
Confidence 135679999998854
No 306
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=93.29 E-value=0.07 Score=52.18 Aligned_cols=134 Identities=11% Similarity=0.080 Sum_probs=79.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCC---CCC---CceEEEeccccc--hhhh--HHHHHHHHhcccCCCcccEEEecCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVL---GPD---QPIALKLLGSER--SLQA--LEGVAMELEDSLFPLLREVKIGINP 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~---~~~---~~I~L~l~d~d~--~~~~--l~g~a~DL~~~~~~~~~~v~i~~~~ 166 (442)
.||.|.|| |..|..++..|+..+.- +++ +.+.+ +|..- ..++ +...-..+.+ +.++-....+.
T Consensus 26 ~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~--vD~~Gll~~~r~~l~~~~~~~~~----~~~~~~~~~~L 98 (254)
T cd00762 26 HKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWX--VDRKGLLVKNRKETCPNEYHLAR----FANPERESGDL 98 (254)
T ss_pred cEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEE--ECCCCeEeCCCCccCHHHHHHHH----HcCcccccCCH
Confidence 69999996 99999999988876542 111 23444 33220 0111 1111111110 11111123567
Q ss_pred ccccC--CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch---hHHHHHHHHHCCCCCc
Q 013466 167 YELFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSIPA 241 (442)
Q Consensus 167 ~eal~--dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv---d~lt~~~~k~s~~~p~ 241 (442)
.|+++ ++|++|=+.+.| |. +-+++.+.|.+++ ++.+|.-.+||. +....-+++.+.+ +
T Consensus 99 ~eav~~~kptvlIG~S~~~---g~-----------ft~evv~~Ma~~~-~~PIIFaLSNPt~~aE~tpe~a~~~t~G--~ 161 (254)
T cd00762 99 EDAVEAAKPDFLIGVSRVG---GA-----------FTPEVIRAXAEIN-ERPVIFALSNPTSKAECTAEEAYTATEG--R 161 (254)
T ss_pred HHHHHhhCCCEEEEeCCCC---CC-----------CCHHHHHHHhhcC-CCCEEEECCCcCCccccCHHHHHhhcCC--C
Confidence 89999 999988665533 31 2245666677775 889999999997 4566667776632 4
Q ss_pred ceeeccchhhHHH
Q 013466 242 KNFHALTRLDENR 254 (442)
Q Consensus 242 kvig~gT~LDs~R 254 (442)
.+|++|.....+.
T Consensus 162 ai~AtGspf~pv~ 174 (254)
T cd00762 162 AIFASGSPFHPVE 174 (254)
T ss_pred EEEEECCCCCCcc
Confidence 6888888755554
No 307
>PRK05884 short chain dehydrogenase; Provisional
Probab=93.25 E-value=0.35 Score=45.79 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=30.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHH
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME 148 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~D 148 (442)
||+.|+||+|+||.+++..|+..|. .+.+. +++.++++..+.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~-----~v~~~----~r~~~~~~~~~~~ 43 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH-----KVTLV----GARRDDLEVAAKE 43 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHh
Confidence 4899999999999999999998774 24442 4455555544433
No 308
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=93.23 E-value=0.37 Score=45.48 Aligned_cols=111 Identities=21% Similarity=0.199 Sum_probs=60.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e---- 168 (442)
..++.|+||+|++|..++..|+..+. .+.+. +++.+.++....++.. ++.+. .| +.+
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~-----~v~~~----~~~~~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~ 69 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGA-----IVGLH----GTRVEKLEALAAELGE-------RVKIFPANLSDRDEVKA 69 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----cCCHHHHHHHHHHhCC-------ceEEEEccCCCHHHHHH
Confidence 46899999999999999999998874 24442 3444555544433321 11111 11 111
Q ss_pred -------ccCCCcEEEEeCCcCCC-CCC-----cHHhHHHHHHHHH----HHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -------LFEDAEWALLIGAKPRG-PGM-----ERAGLLDINGQIF----AEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~k-pg~-----~r~dll~~N~~Ii----~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|+||..+|.... +.. +-...+..|..-. +.+.+.+.+. ..+.+++++..
T Consensus 70 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~~sS~ 140 (245)
T PRK12936 70 LGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRR--RYGRIINITSV 140 (245)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHh--CCCEEEEECCH
Confidence 23468999998885421 111 1123345554433 3333333332 45677777754
No 309
>PRK12829 short chain dehydrogenase; Provisional
Probab=93.23 E-value=1.9 Score=41.14 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+.++|.|+||+|++|++++..|+..|.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~ 36 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA 36 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 347999999999999999999998874
No 310
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.22 E-value=1.8 Score=40.77 Aligned_cols=75 Identities=23% Similarity=0.234 Sum_probs=46.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~----- 167 (442)
..+|.|+||+|++|.+++..|+..|. .|.+. +++.+.++....++... + .++.+. .| +.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~-----~Vi~~----~r~~~~~~~~~~~~~~~--~--~~~~~~~~D~~~~~~~~~ 73 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV-----NVGLL----ARTEENLKAVAEEVEAY--G--VKVVIATADVSDYEEVTA 73 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHHh--C--CeEEEEECCCCCHHHHHH
Confidence 35799999999999999999998874 25452 44444444444455321 1 122221 11 11
Q ss_pred ------cccCCCcEEEEeCCcC
Q 013466 168 ------ELFEDAEWALLIGAKP 183 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~ 183 (442)
+.+.+.|+||.++|..
T Consensus 74 ~~~~~~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 74 AIEQLKNELGSIDILINNAGIS 95 (239)
T ss_pred HHHHHHHHcCCccEEEEcCccc
Confidence 1234789999988754
No 311
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=93.21 E-value=0.46 Score=45.54 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=32.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL 149 (442)
.+|.|+||+|.+|.+++..|+..|. .+.+. +++.+.++....++
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~ 50 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGA-----RVVIA----DIKPARARLAALEI 50 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC-----EEEEE----cCCHHHHHHHHHHh
Confidence 4799999999999999999999874 25442 44555555554444
No 312
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.20 E-value=1.3 Score=41.72 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=32.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.+.....++.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l~ 51 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA-----EVIV----VDICGDDAAATAELVE 51 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 45899999999999999999998874 2444 2444444444444443
No 313
>PLN02253 xanthoxin dehydrogenase
Probab=93.15 E-value=2 Score=41.74 Aligned_cols=26 Identities=15% Similarity=0.048 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|+||.+++..|+..|.
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~ 43 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGA 43 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC
Confidence 35799999999999999999998874
No 314
>PRK08219 short chain dehydrogenase; Provisional
Probab=93.14 E-value=0.49 Score=44.04 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAG 119 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~ 119 (442)
+++|.|+||+|.+|..++..|+..
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~ 26 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT 26 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh
Confidence 468999999999999999999976
No 315
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=93.14 E-value=1.3 Score=42.31 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=34.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
+.++|.|+||+|+||..++..|+..|. .+.+. +++.+.+.....++.
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~ 56 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-----HVLVN----GRNAATLEAAVAALR 56 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-----eEEEE----eCCHHHHHHHHHHHH
Confidence 356899999999999999999998774 25552 444555555555554
No 316
>PRK05876 short chain dehydrogenase; Provisional
Probab=93.13 E-value=1 Score=44.12 Aligned_cols=113 Identities=13% Similarity=0.065 Sum_probs=62.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY------ 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~------ 167 (442)
+.+.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++.... .++.. ..| +.
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~-----~Vv~~----~r~~~~l~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~~ 73 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGA-----RVVLG----DVDKPGLRQAVNHLRAEG----FDVHGVMCDVRHREEVTHL 73 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CeEEEEeCCCCCHHHHHHH
Confidence 4689999999999999999999875 25442 444555665555554221 01211 111 11
Q ss_pred -----cccCCCcEEEEeCCcCCC-C--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 -----ELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 -----eal~dADiVIi~ag~~~k-p--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..+|.... + ..+. ...+..|.. +.+.+.+.+.+. +..+.+++++.
T Consensus 74 ~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~-~~~g~iv~isS 143 (275)
T PRK05876 74 ADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQ-GTGGHVVFTAS 143 (275)
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCCEEEEeCC
Confidence 123457999999886431 1 1122 223445543 344444444443 23466777764
No 317
>PRK09242 tropinone reductase; Provisional
Probab=93.11 E-value=1.5 Score=41.86 Aligned_cols=115 Identities=14% Similarity=0.140 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------ 166 (442)
.+++.|+||+|+||..++..|+..|. .|.+. +++.+.++....++.+.. +. .++.. ..| +
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~-----~v~~~----~r~~~~~~~~~~~l~~~~-~~-~~~~~~~~Dl~~~~~~~~ 77 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA-----DVLIV----ARDADALAQARDELAEEF-PE-REVHGLAADVSDDEDRRA 77 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHHHHHhhC-CC-CeEEEEECCCCCHHHHHH
Confidence 35899999999999999999998774 24442 445566666666654331 10 11211 111 1
Q ss_pred -----ccccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 -----YELFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~-kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+...|+||..+|... .+. .+. ...+..|.. +++...+.+.+. +.+.+++++.
T Consensus 78 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~ii~~sS 147 (257)
T PRK09242 78 ILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH--ASSAIVNIGS 147 (257)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCceEEEECc
Confidence 223456899999887532 121 121 123344433 344444445442 4466666664
No 318
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.10 E-value=0.49 Score=49.00 Aligned_cols=86 Identities=13% Similarity=0.129 Sum_probs=51.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||+|||.+|-||..++..|.... + ..++-+ |++ |.. ..+..+.+++||+
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~--~----~~V~g~--D~~------------d~~---------~~~~~~~v~~aDl 54 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM--Q----LEVIGH--DPA------------DPG---------SLDPATLLQRADV 54 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC--C----CEEEEE--cCC------------ccc---------cCCHHHHhcCCCE
Confidence 4699999955999999999999752 2 223223 321 111 1234577899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
||++.- ...+.+++.++++..... +|+++|.-++-
T Consensus 55 VilavP------------v~~~~~~l~~l~~~~~~l-~~~~iVtDVgS 89 (370)
T PRK08818 55 LIFSAP------------IRHTAALIEEYVALAGGR-AAGQLWLDVTS 89 (370)
T ss_pred EEEeCC------------HHHHHHHHHHHhhhhcCC-CCCeEEEECCC
Confidence 999854 233344444444422112 36666665553
No 319
>PRK07340 ornithine cyclodeaminase; Validated
Probab=93.10 E-value=0.29 Score=49.24 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
...+|+|||+ |.+|...+..+.. .+. +.|.++ +++.++++..+.++... .. .+. ..+..+++.+|
T Consensus 124 ~~~~v~IiGa-G~qa~~~~~al~~~~~~----~~v~v~----~r~~~~a~~~a~~~~~~--~~--~~~-~~~~~~av~~a 189 (304)
T PRK07340 124 PPGDLLLIGT-GVQARAHLEAFAAGLPV----RRVWVR----GRTAASAAAFCAHARAL--GP--TAE-PLDGEAIPEAV 189 (304)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHhCCC----CEEEEE----cCCHHHHHHHHHHHHhc--CC--eeE-ECCHHHHhhcC
Confidence 4579999995 9999999998875 343 235553 66778888888777532 11 223 34567789999
Q ss_pred cEEEEeC
Q 013466 174 EWALLIG 180 (442)
Q Consensus 174 DiVIi~a 180 (442)
|+|+.+-
T Consensus 190 DiVitaT 196 (304)
T PRK07340 190 DLVVTAT 196 (304)
T ss_pred CEEEEcc
Confidence 9999863
No 320
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=93.06 E-value=0.5 Score=47.84 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=40.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
.+||+|||+ |++|.+++..|...++ .+.+.+ +.+.+.++.. .+. . +.. .+..+++++||+
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~-----~Viv~~---~~~~~~~~~a-~~~-----G----v~~-~s~~ea~~~ADi 62 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGL-----NVIVGL---RKGGASWKKA-TED-----G----FKV-GTVEEAIPQADL 62 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCC-----eEEEEE---CcChhhHHHH-HHC-----C----CEE-CCHHHHHhcCCE
Confidence 368999995 9999999999998875 133321 2222222211 111 1 122 235678899999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
|+++.
T Consensus 63 VvLaV 67 (314)
T TIGR00465 63 IMNLL 67 (314)
T ss_pred EEEeC
Confidence 99974
No 321
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.03 E-value=1.9 Score=40.39 Aligned_cols=27 Identities=26% Similarity=0.172 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+.++|.|+||+|.+|.+++..|+..|.
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~ 30 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGA 30 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC
Confidence 446899999999999999999998774
No 322
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=93.03 E-value=0.17 Score=48.74 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..++.|+||+|+||.+++..|+..|.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~ 30 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGA 30 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999999874
No 323
>PRK12828 short chain dehydrogenase; Provisional
Probab=92.98 E-value=0.59 Score=43.74 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|.||..++..|++.|.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~ 32 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA 32 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC
Confidence 46899999999999999999998874
No 324
>PRK07074 short chain dehydrogenase; Provisional
Probab=92.97 E-value=1.8 Score=41.33 Aligned_cols=44 Identities=27% Similarity=0.230 Sum_probs=31.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL 149 (442)
.+|.|+||+|.||..++..|+..|. .+.+. +++.+.++....++
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~-----~v~~~----~r~~~~~~~~~~~~ 46 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD-----RVLAL----DIDAAALAAFADAL 46 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHh
Confidence 3799999999999999999998774 24442 44555555444444
No 325
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=92.95 E-value=1.1 Score=49.75 Aligned_cols=97 Identities=7% Similarity=0.025 Sum_probs=59.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
+..|||.|+||+|.||++++..|...+. ++.+..- +.. + ...+..++.+ .+.
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~-----~v~~~~~--~l~-d-~~~v~~~i~~-------------------~~p 429 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI-----AYEYGKG--RLE-D-RSSLLADIRN-------------------VKP 429 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCC-----eEEeecc--ccc-c-HHHHHHHHHh-------------------hCC
Confidence 3457999999999999999999988663 1322111 100 0 1111111110 157
Q ss_pred cEEEEeCCcCCCCCC-----cHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEe
Q 013466 174 EWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (442)
Q Consensus 174 DiVIi~ag~~~kpg~-----~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivv 221 (442)
|+||.+|+....+.. +..+.+..|..-...+++.+.+. + +.++++
T Consensus 430 d~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~-g--~~~v~~ 479 (668)
T PLN02260 430 THVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCREN-G--LLMMNF 479 (668)
T ss_pred CEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHc-C--CeEEEE
Confidence 999998876432222 34567788999899999988875 2 344555
No 326
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.93 E-value=1.9 Score=40.78 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=23.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|+||..++..|+..|.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~ 29 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGY 29 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999999874
No 327
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.91 E-value=0.27 Score=50.56 Aligned_cols=79 Identities=20% Similarity=0.145 Sum_probs=48.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v 160 (442)
..||.|+|+ |++|+.++..|+..|+- .|.|.|.|. |....+++..+..|.... |.. ++
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~~Gvg----~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-p~v-~v 100 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAGAGVG----HITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN-PDV-KV 100 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCC----eEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC-CCc-EE
Confidence 369999996 99999999999999972 366654432 111134555555554433 321 22
Q ss_pred EEe-----cC-cccccCCCcEEEEeCC
Q 013466 161 KIG-----IN-PYELFEDAEWALLIGA 181 (442)
Q Consensus 161 ~i~-----~~-~~eal~dADiVIi~ag 181 (442)
... .. ..+.++++|+||.+..
T Consensus 101 ~~~~~~i~~~~~~~~~~~~DvVvd~~d 127 (355)
T PRK05597 101 TVSVRRLTWSNALDELRDADVILDGSD 127 (355)
T ss_pred EEEEeecCHHHHHHHHhCCCEEEECCC
Confidence 221 11 1356899999998744
No 328
>PRK06125 short chain dehydrogenase; Provisional
Probab=92.91 E-value=2 Score=41.19 Aligned_cols=114 Identities=15% Similarity=0.089 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.++|.|+||+|++|..++..|+..|. .+.+. +++.+.++....++.... . .++.. ..| +.
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~-~--~~~~~~~~D~~~~~~~~~ 74 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC-----HLHLV----ARDADALEALAADLRAAH-G--VDVAVHALDLSSPEAREQ 74 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHHHHHhhc-C--CceEEEEecCCCHHHHHH
Confidence 36899999999999999999998774 24442 445555555544444221 1 01111 111 11
Q ss_pred --cccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 --ELFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 --eal~dADiVIi~ag~~~-kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..+|... .+- .+. ...+..|.. +.+.+.+.+.+. ..+.+++++.
T Consensus 75 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~iss 140 (259)
T PRK06125 75 LAAEAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR--GSGVIVNVIG 140 (259)
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEecC
Confidence 23467899999887542 221 121 223444543 344445555552 3466776664
No 329
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=92.86 E-value=0.54 Score=46.22 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=47.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|.|+|+ |++|.+++..|+..+. .+.+. +++.++++..+.++... . .+.....+...+.++|+
T Consensus 117 ~k~vliiGa-Gg~g~aia~~L~~~g~-----~v~v~----~R~~~~~~~la~~~~~~--~---~~~~~~~~~~~~~~~Di 181 (270)
T TIGR00507 117 NQRVLIIGA-GGAARAVALPLLKADC-----NVIIA----NRTVSKAEELAERFQRY--G---EIQAFSMDELPLHRVDL 181 (270)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHhhc--C---ceEEechhhhcccCccE
Confidence 468999996 9999999999998763 25442 56666777666655421 1 12222222334568999
Q ss_pred EEEeCCcC
Q 013466 176 ALLIGAKP 183 (442)
Q Consensus 176 VIi~ag~~ 183 (442)
||.+.+..
T Consensus 182 vInatp~g 189 (270)
T TIGR00507 182 IINATSAG 189 (270)
T ss_pred EEECCCCC
Confidence 99976543
No 330
>PRK07035 short chain dehydrogenase; Provisional
Probab=92.86 E-value=1 Score=42.87 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=33.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
.+|.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~-----~Vi~~----~r~~~~~~~~~~~~~ 53 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGA-----HVIVS----SRKLDGCQAVADAIV 53 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 5799999999999999999998874 25442 445555555555554
No 331
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=92.83 E-value=0.41 Score=48.28 Aligned_cols=25 Identities=16% Similarity=0.014 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+||.|+||+|.||++++..|+..|.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~ 25 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY 25 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC
Confidence 4899999999999999999998774
No 332
>PRK05855 short chain dehydrogenase; Validated
Probab=92.81 E-value=0.98 Score=48.40 Aligned_cols=113 Identities=13% Similarity=0.066 Sum_probs=65.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--cc------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY------ 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~------ 167 (442)
.++.|+||+|+||.+++..|+..|. .+.+ .+++.+.++..+.++.... .++... .| +.
T Consensus 316 ~~~lv~G~s~giG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~~~~~ 382 (582)
T PRK05855 316 KLVVVTGAGSGIGRETALAFAREGA-----EVVA----SDIDEAAAERTAELIRAAG----AVAHAYRVDVSDADAMEAF 382 (582)
T ss_pred CEEEEECCcCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCHHHHHHH
Confidence 6899999999999999999999875 2444 2556666666665554221 112111 11 11
Q ss_pred -----cccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 -----ELFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 -----eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..+|...... .+. ...+..|. .+.+...+.+.+. +..+.|++++.
T Consensus 383 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~g~iv~~sS 452 (582)
T PRK05855 383 AEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVER-GTGGHIVNVAS 452 (582)
T ss_pred HHHHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCcEEEEECC
Confidence 12335799999988653211 121 22344553 3344445555553 24577777765
No 333
>PRK07677 short chain dehydrogenase; Provisional
Probab=92.78 E-value=2.4 Score=40.44 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=61.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc-----
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----- 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e----- 168 (442)
+++.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++.... .++.. ..| +.+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-----~Vi~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~ 68 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-----NVVIT----GRTKEKLEEAKLEIEQFP----GQVLTVQMDVRNPEDVQKM 68 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHHH
Confidence 4789999999999999999998775 24442 444455555555453221 11211 111 111
Q ss_pred ------ccCCCcEEEEeCCcCC-CC--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 ------LFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 ------al~dADiVIi~ag~~~-kp--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...|+||..+|... .+ ..+. ...+..|.. +.+.+.+.+.+. ...+.+++++-
T Consensus 69 ~~~~~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~g~ii~isS 138 (252)
T PRK07677 69 VEQIDEKFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEK-GIKGNIINMVA 138 (252)
T ss_pred HHHHHHHhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCCEEEEEEcC
Confidence 2346799999877432 12 2222 223445543 334444443332 23577777773
No 334
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=92.77 E-value=0.7 Score=46.83 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHH-HHHHHHhcccCCCcccEEEecCcccccCCCcEEEEeCC
Q 013466 108 IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGA 181 (442)
Q Consensus 108 VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~-g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIi~ag 181 (442)
-|+.+|..|+..|. ++.++ |++.++++ ..+..+.+. .+....+..++.++||+||++-.
T Consensus 31 gGspMArnLlkAGh-----eV~V~----Drnrsa~e~e~~e~Laea------GA~~AaS~aEAAa~ADVVIL~LP 90 (341)
T TIGR01724 31 GGSRMAIEFAMAGH-----DVVLA----EPNREFMSDDLWKKVEDA------GVKVVSDDKEAAKHGEIHVLFTP 90 (341)
T ss_pred CHHHHHHHHHHCCC-----EEEEE----eCChhhhhhhhhHHHHHC------CCeecCCHHHHHhCCCEEEEecC
Confidence 37889999998774 35553 44444332 222233322 13344567799999999998733
No 335
>PRK05875 short chain dehydrogenase; Provisional
Probab=92.75 E-value=1.8 Score=41.85 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=32.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
.++|.|+||+|.||.+++..|+..|. .+.+. +++.+.++....++.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~ 52 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA-----AVMIV----GRNPDKLAAAAEEIE 52 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHHHH
Confidence 36899999999999999999999875 25553 344445554444443
No 336
>PRK06198 short chain dehydrogenase; Provisional
Probab=92.73 E-value=1.9 Score=41.23 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|+||..++..|+..|.
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~ 31 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGA 31 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
No 337
>PRK06823 ornithine cyclodeaminase; Validated
Probab=92.73 E-value=0.48 Score=47.95 Aligned_cols=73 Identities=19% Similarity=0.141 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
...+++|||+ |..+..-+..+....-+ +.|.++ +++.++++..+..+++. . .++.+..+..+++++||
T Consensus 127 d~~~l~iiG~-G~qA~~~~~a~~~v~~i---~~v~v~----~r~~~~a~~~~~~~~~~--~--~~v~~~~~~~~av~~AD 194 (315)
T PRK06823 127 HVSAIGIVGT-GIQARMQLMYLKNVTDC---RQLWVW----GRSETALEEYRQYAQAL--G--FAVNTTLDAAEVAHAAN 194 (315)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhcCCC---CEEEEE----CCCHHHHHHHHHHHHhc--C--CcEEEECCHHHHhcCCC
Confidence 4679999995 99999888877764323 346663 66778888777655532 1 24666667789999999
Q ss_pred EEEEe
Q 013466 175 WALLI 179 (442)
Q Consensus 175 iVIi~ 179 (442)
+|+.+
T Consensus 195 IV~ta 199 (315)
T PRK06823 195 LIVTT 199 (315)
T ss_pred EEEEe
Confidence 99975
No 338
>PRK07063 short chain dehydrogenase; Provisional
Probab=92.71 E-value=1.9 Score=41.28 Aligned_cols=115 Identities=11% Similarity=0.003 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++...... .++.. ..| +.+
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~-----~vv~~----~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~ 75 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA-----AVALA----DLDAALAERAAAAIARDVAG--ARVLAVPADVTDAASVAA 75 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhccCC--ceEEEEEccCCCHHHHHH
Confidence 35799999999999999999999874 25442 45556666666666431101 11211 111 111
Q ss_pred -------ccCCCcEEEEeCCcCC-CC-C-CcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 -------LFEDAEWALLIGAKPR-GP-G-MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~-kp-g-~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...|++|..+|... .+ . .+. ...+..|..- .+...+.+.+. ..+.|++++-
T Consensus 76 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~isS 145 (260)
T PRK07063 76 AVAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER--GRGSIVNIAS 145 (260)
T ss_pred HHHHHHHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--CCeEEEEECC
Confidence 2346899999888532 11 1 122 1233444332 34444444442 3567777765
No 339
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=92.70 E-value=0.18 Score=52.09 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=44.2
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc----ccccCCCc
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELFEDAE 174 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~----~eal~dAD 174 (442)
|.|+|| |.||+.++..|+....+. .+.+ .|++.++++..+..+.. .....+.+...+ .+.++++|
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~---~v~v----a~r~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~l~~~~~~~d 69 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFE---EVTV----ADRNPEKAERLAEKLLG---DRVEAVQVDVNDPESLAELLRGCD 69 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE----EEEE----EESSHHHHHHHHT--TT---TTEEEEE--TTTHHHHHHHHTTSS
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCC---cEEE----EECCHHHHHHHHhhccc---cceeEEEEecCCHHHHHHHHhcCC
Confidence 789998 999999999999877532 2555 47777777766554311 111112222222 45789999
Q ss_pred EEEEeCCc
Q 013466 175 WALLIGAK 182 (442)
Q Consensus 175 iVIi~ag~ 182 (442)
+||.++|.
T Consensus 70 vVin~~gp 77 (386)
T PF03435_consen 70 VVINCAGP 77 (386)
T ss_dssp EEEE-SSG
T ss_pred EEEECCcc
Confidence 99999874
No 340
>PRK09135 pteridine reductase; Provisional
Probab=92.64 E-value=0.88 Score=42.91 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+|.|+||+|++|++++..|+..|.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~ 31 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGY 31 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998774
No 341
>PLN02686 cinnamoyl-CoA reductase
Probab=92.61 E-value=0.39 Score=49.35 Aligned_cols=108 Identities=11% Similarity=0.069 Sum_probs=58.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhccc-CC-CcccEEE-ecC-----
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FP-LLREVKI-GIN----- 165 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~-~~-~~~~v~i-~~~----- 165 (442)
.++++|.|+||+|.||++++..|+..|. .|.+.. ++.+.+... .++.... .. ....+.. ..|
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~-----~V~~~~----r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~ 120 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGY-----SVRIAV----DTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPE 120 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCC-----EEEEEe----CCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHH
Confidence 3457999999999999999999999874 243321 122222211 1221100 00 0001221 111
Q ss_pred -cccccCCCcEEEEeCCcCCCCCC--cHHhHHHHHHHHHHHHHHHHHhh
Q 013466 166 -PYELFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 166 -~~eal~dADiVIi~ag~~~kpg~--~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
..++++++|.|+.+++.....+. ....+...|..-...+.+.+.+.
T Consensus 121 ~l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~ 169 (367)
T PLN02686 121 SLHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT 169 (367)
T ss_pred HHHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence 23467889999987764322221 12344556777777777776663
No 342
>PRK08263 short chain dehydrogenase; Provisional
Probab=92.60 E-value=0.32 Score=47.33 Aligned_cols=25 Identities=8% Similarity=-0.133 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|.||.+++..|+..|.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~ 28 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD 28 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC
Confidence 4799999999999999999998774
No 343
>PRK08703 short chain dehydrogenase; Provisional
Probab=92.54 E-value=2.6 Score=39.83 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=32.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL 149 (442)
.+|.|+||+|++|.+++..|+..|. .+.+ .+++.+.++....++
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l 50 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGA-----TVIL----VARHQKKLEKVYDAI 50 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCC-----EEEE----EeCChHHHHHHHHHH
Confidence 5899999999999999999998774 2444 255556666555544
No 344
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=92.54 E-value=0.4 Score=48.39 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=56.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c----ccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P----YEL 169 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~----~ea 169 (442)
|||.|+||+|.||++++..|+..|.- .+.. ++......... ...++... .++. +..| + .++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~----~v~~--~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~Dl~d~~~~~~~ 68 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQD----SVVN--VDKLTYAGNLE-SLADVSDS-----ERYVFEHADICDRAELDRI 68 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCC----eEEE--ecCCCccchHH-HHHhcccC-----CceEEEEecCCCHHHHHHH
Confidence 58999999999999999999987641 1222 21100001111 11111100 0111 1111 1 233
Q ss_pred cC--CCcEEEEeCCcCCC--CCCcHHhHHHHHHHHHHHHHHHHHhh
Q 013466 170 FE--DAEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 170 l~--dADiVIi~ag~~~k--pg~~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
++ +.|+||.+|+.... +.....+.+..|+.-...+.+.+.++
T Consensus 69 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~ 114 (352)
T PRK10084 69 FAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNY 114 (352)
T ss_pred HHhcCCCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHh
Confidence 43 47999999886431 12223557788888888888777653
No 345
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=92.52 E-value=1.6 Score=42.27 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
..++.|+||+|++|.+++..|+..|. .+.+. +++.+.++....++.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~ 55 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA-----KVAIL----DRNQEKAEAVVAEIK 55 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 35799999999999999999998875 25442 444555555555554
No 346
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=92.52 E-value=0.37 Score=49.60 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=61.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-------cCc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INP 166 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-------~~~ 166 (442)
.++.++.|+|++|.+|.+++..|...+.. ..++++|...........-.++ ....++.- ...
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~-----~~irv~D~~~~~~~~~~e~~~~------~~~~v~~~~~D~~~~~~i 70 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELK-----LEIRVVDKTPTQSNLPAELTGF------RSGRVTVILGDLLDANSI 70 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccc-----cEEEEeccCccccccchhhhcc------cCCceeEEecchhhhhhh
Confidence 34679999999999999999999998853 2344443322112222221111 11122221 234
Q ss_pred ccccCCCcEEEEe-CC-cCCCCCCcHHhHHHHHHHHHHHHHHHHHhh
Q 013466 167 YELFEDAEWALLI-GA-KPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 167 ~eal~dADiVIi~-ag-~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
..++.++ .|++. ++ .|+..-..|......|.+=-+.+.+.+.+.
T Consensus 71 ~~a~~~~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~ 116 (361)
T KOG1430|consen 71 SNAFQGA-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKEL 116 (361)
T ss_pred hhhccCc-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHh
Confidence 7789999 55554 33 233222245555667777667777777764
No 347
>PRK05865 hypothetical protein; Provisional
Probab=92.51 E-value=0.2 Score=57.12 Aligned_cols=103 Identities=17% Similarity=0.077 Sum_probs=60.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe--cCcccccCCCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~--~~~~eal~dAD 174 (442)
|||.|+||+|.||++++..|+..|. .+... +++.... +.... .+ ....+. ....++++++|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~-----~Vv~l----~R~~~~~------~~~~v-~~-v~gDL~D~~~l~~al~~vD 63 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH-----EVVGI----ARHRPDS------WPSSA-DF-IAADIRDATAVESAMTGAD 63 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-----EEEEE----ECCchhh------cccCc-eE-EEeeCCCHHHHHHHHhCCC
Confidence 5899999999999999999998774 24332 2221110 00000 00 001111 11235678899
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+||.+++... + ....|..-...+.+.+.+. + -..+++++.+.
T Consensus 64 ~VVHlAa~~~-~------~~~vNv~GT~nLLeAa~~~-g-vkr~V~iSS~~ 105 (854)
T PRK05865 64 VVAHCAWVRG-R------NDHINIDGTANVLKAMAET-G-TGRIVFTSSGH 105 (854)
T ss_pred EEEECCCccc-c------hHHHHHHHHHHHHHHHHHc-C-CCeEEEECCcH
Confidence 9999987432 1 3456777677777777764 2 23677777664
No 348
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=92.50 E-value=1.1 Score=45.02 Aligned_cols=107 Identities=11% Similarity=-0.020 Sum_probs=56.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc-chhhhHHHHHHHHhcccCCCcccEEEe-cC--c----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQALEGVAMELEDSLFPLLREVKIG-IN--P----Y 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d-~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~----~ 167 (442)
.+||.|+||+|.||++++..|+..|. .|.+.....+ .+.+.++....+. +. ....+... .| + .
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~-----~V~~~~r~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~Dl~d~~~~~ 76 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGY-----EVHGIIRRSSNFNTQRLDHIYIDP-HP---NKARMKLHYGDLSDASSLR 76 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCC-----EEEEEecccccccccchhhhcccc-cc---ccCceEEEEecCCCHHHHH
Confidence 46899999999999999999999874 2433221111 0111222221110 00 00112111 11 1 2
Q ss_pred cccCC--CcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhh
Q 013466 168 ELFED--AEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 168 eal~d--ADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
+.+++ .|+||.+|+...... ..-...+..|..-...+.+.+.+.
T Consensus 77 ~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~ 124 (340)
T PLN02653 77 RWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLH 124 (340)
T ss_pred HHHHHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHh
Confidence 33443 599999988643221 122334566766667777777665
No 349
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.43 E-value=0.41 Score=47.38 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=27.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG 134 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d 134 (442)
..+|.|+|+ |+||+.++..|+..|+- .|.|.+.|
T Consensus 30 ~s~VlVvG~-GGVGs~vae~Lar~GVg----~itLiD~D 63 (268)
T PRK15116 30 DAHICVVGI-GGVGSWAAEALARTGIG----AITLIDMD 63 (268)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCCC----EEEEEeCC
Confidence 469999995 99999999999999962 26665543
No 350
>PRK07589 ornithine cyclodeaminase; Validated
Probab=92.43 E-value=0.44 Score=48.88 Aligned_cols=73 Identities=16% Similarity=0.093 Sum_probs=52.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+++|||+ |..+...+..++.-.-+ ++|.++ +++.++++..+.++.+. . .++....+..+++++||+
T Consensus 129 a~~l~iiGa-G~QA~~~l~a~~~vr~i---~~V~v~----~r~~~~a~~~~~~~~~~--~--~~v~~~~~~~~av~~ADI 196 (346)
T PRK07589 129 SRTMALIGN-GAQSEFQALAFKALLGI---EEIRLY----DIDPAATAKLARNLAGP--G--LRIVACRSVAEAVEGADI 196 (346)
T ss_pred CcEEEEECC-cHHHHHHHHHHHHhCCc---eEEEEE----eCCHHHHHHHHHHHHhc--C--CcEEEeCCHHHHHhcCCE
Confidence 578999995 99998877666643222 345553 66778888888887642 1 246666778899999999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
|+.+-
T Consensus 197 IvtaT 201 (346)
T PRK07589 197 ITTVT 201 (346)
T ss_pred EEEec
Confidence 99853
No 351
>PRK07201 short chain dehydrogenase; Provisional
Probab=92.43 E-value=1.6 Score=47.95 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=56.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-C----------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N---------- 165 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~---------- 165 (442)
|||.|+||+|.||++++..|+....- ..|.... .+.....+......+.+ .++.... |
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g---~~V~~l~--R~~~~~~~~~~~~~~~~------~~v~~~~~Dl~~~~~~~~~ 69 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRRE---ATVHVLV--RRQSLSRLEALAAYWGA------DRVVPLVGDLTEPGLGLSE 69 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCC---CEEEEEE--CcchHHHHHHHHHhcCC------CcEEEEecccCCccCCcCH
Confidence 48999999999999999999952211 1243321 11111222222111100 0122111 1
Q ss_pred -cccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhh
Q 013466 166 -PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 166 -~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
..+.++++|+||.+++... ......+....|..-...+.+.+.+.
T Consensus 70 ~~~~~l~~~D~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~ 115 (657)
T PRK07201 70 ADIAELGDIDHVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERL 115 (657)
T ss_pred HHHHHhcCCCEEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhc
Confidence 1223488999999887532 22334455677877777887777764
No 352
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.40 E-value=0.55 Score=49.28 Aligned_cols=90 Identities=13% Similarity=0.082 Sum_probs=55.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
-.+|+|+|+ |.||..++..+...|. .+.+. |+++.+++ .+.++ .. .+ ....++++++|+
T Consensus 202 GktVvViG~-G~IG~~va~~ak~~Ga-----~ViV~----d~d~~R~~-~A~~~-----G~--~~---~~~~e~v~~aDV 260 (413)
T cd00401 202 GKVAVVAGY-GDVGKGCAQSLRGQGA-----RVIVT----EVDPICAL-QAAME-----GY--EV---MTMEEAVKEGDI 260 (413)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----EEEEE----ECChhhHH-HHHhc-----CC--EE---ccHHHHHcCCCE
Confidence 469999995 9999999999998775 14442 44444443 33322 11 11 123477889999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
||.+.|. ..++..- .+... .+++++++++.+
T Consensus 261 VI~atG~---------------~~~i~~~--~l~~m-k~GgilvnvG~~ 291 (413)
T cd00401 261 FVTTTGN---------------KDIITGE--HFEQM-KDGAIVCNIGHF 291 (413)
T ss_pred EEECCCC---------------HHHHHHH--HHhcC-CCCcEEEEeCCC
Confidence 9988662 2223221 12332 478899999975
No 353
>PRK07062 short chain dehydrogenase; Provisional
Probab=92.39 E-value=2.2 Score=40.98 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=62.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ec--Ccc------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPY------ 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~--~~~------ 167 (442)
..+.|+||+|+||.+++..|+..|. .+.+. +++.++++....++.... +- .++.. .. .+.
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~v~~~ 77 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGA-----SVAIC----GRDEERLASAEARLREKF-PG-ARLLAARCDVLDEADVAAF 77 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHHHHhhC-CC-ceEEEEEecCCCHHHHHHH
Confidence 5799999999999999999998875 25442 455556665555554321 10 11211 11 111
Q ss_pred -----cccCCCcEEEEeCCcCCC-C--CCcHH---hHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 -----ELFEDAEWALLIGAKPRG-P--GMERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 -----eal~dADiVIi~ag~~~k-p--g~~r~---dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..+|.... + ..+.. ..+..| ....+.+.+.+.+. ..+.|++++-
T Consensus 78 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~isS 146 (265)
T PRK07062 78 AAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRAS--AAASIVCVNS 146 (265)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--CCcEEEEecc
Confidence 223567999999886431 1 11111 122233 33445555555552 3466776654
No 354
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=92.39 E-value=0.75 Score=45.19 Aligned_cols=74 Identities=19% Similarity=0.117 Sum_probs=43.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||+|.||+|.+|..+...+.+.+-+ .|.-. .++...... -.|.....---.-.+-++.+......++|+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~------~L~aa-~~~~~~~~~--g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV 72 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDL------ELVAA-FDRPGSLSL--GSDAGELAGLGLLGVPVTDDLLLVKADADV 72 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCc------eEEEE-EecCCcccc--ccchhhhccccccCceeecchhhcccCCCE
Confidence 689999999999999999999987742 22211 132222111 111111110001134455556778889999
Q ss_pred EEE
Q 013466 176 ALL 178 (442)
Q Consensus 176 VIi 178 (442)
+|=
T Consensus 73 ~ID 75 (266)
T COG0289 73 LID 75 (266)
T ss_pred EEE
Confidence 884
No 355
>PRK06500 short chain dehydrogenase; Provisional
Probab=92.38 E-value=0.61 Score=44.18 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=23.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+|.|+||+|.+|.+++..|+..|.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~ 31 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGA 31 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999999874
No 356
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.37 E-value=0.44 Score=49.30 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=47.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v 160 (442)
..||.|+|+ |++|+.++..|+..|+ + .|.|.+.|. |....+++..+..|.... +.. ++
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~~Gv-g---~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v-~v 207 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAAAGV-G---TLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN-PDV-QV 207 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC-C---eEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC-CCC-EE
Confidence 358999995 9999999999999996 2 366654431 111335555555454332 211 22
Q ss_pred EEecC------cccccCCCcEEEEeCC
Q 013466 161 KIGIN------PYELFEDAEWALLIGA 181 (442)
Q Consensus 161 ~i~~~------~~eal~dADiVIi~ag 181 (442)
..... ..+.++++|+||.+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~D~Vv~~~d 234 (376)
T PRK08762 208 EAVQERVTSDNVEALLQDVDVVVDGAD 234 (376)
T ss_pred EEEeccCChHHHHHHHhCCCEEEECCC
Confidence 22111 1235789999998744
No 357
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=92.37 E-value=0.47 Score=47.02 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=52.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||.|+||+|.+|+++...|...+. ++.. . ++. -.|+.+.. .+ ....+.. .-|+|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~-----~v~~--~--~r~-------~~dl~d~~-~~-------~~~~~~~-~pd~V 55 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY-----EVIA--T--SRS-------DLDLTDPE-AV-------AKLLEAF-KPDVV 55 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE-----EEEE--E--STT-------CS-TTSHH-HH-------HHHHHHH---SEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC-----EEEE--e--Cch-------hcCCCCHH-HH-------HHHHHHh-CCCeE
Confidence 7999999999999999999998663 1222 1 111 11111110 00 0001112 36799
Q ss_pred EEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 177 LLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 177 Ii~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
|.+++...... .+.......|......+++.+.+. ++.+|.+|
T Consensus 56 in~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~---~~~li~~S 100 (286)
T PF04321_consen 56 INCAAYTNVDACEKNPEEAYAINVDATKNLAEACKER---GARLIHIS 100 (286)
T ss_dssp EE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHC---T-EEEEEE
T ss_pred eccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHc---CCcEEEee
Confidence 99887543111 234556678888888888887763 56777666
No 358
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=92.35 E-value=0.45 Score=45.81 Aligned_cols=44 Identities=20% Similarity=0.230 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHH
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME 148 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~D 148 (442)
..+|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....+
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~ 49 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGA-----RVAVL----ERSAEKLASLRQR 49 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHH
Confidence 35899999999999999999998874 25442 4555555544433
No 359
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.32 E-value=0.83 Score=43.34 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|+||.+++..|+..|.
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G~ 30 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREGA 30 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
No 360
>PRK05872 short chain dehydrogenase; Provisional
Probab=92.29 E-value=2.4 Score=41.92 Aligned_cols=46 Identities=30% Similarity=0.276 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
..+|.|+||+|+||..++..|+..|. .+.+. +++.+.++..+.++.
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~l~~~~~~l~ 54 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA-----KLALV----DLEEAELAALAAELG 54 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhc
Confidence 35899999999999999999999884 25442 455666666655553
No 361
>PRK06924 short chain dehydrogenase; Provisional
Probab=92.26 E-value=0.28 Score=46.74 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
|++|.|+||+|++|+.++..|++.|.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~ 26 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGT 26 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCC
Confidence 35799999999999999999999874
No 362
>PRK12742 oxidoreductase; Provisional
Probab=92.24 E-value=0.94 Score=42.58 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|+||..++..|+..|.
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~ 31 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA 31 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
No 363
>PRK06199 ornithine cyclodeaminase; Validated
Probab=92.15 E-value=0.54 Score=48.82 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
....++|||+ |..+..-+..++. .+-+ +.|.++ +++.++++..+.++.+.. +...++.+..+..+++++|
T Consensus 154 da~~l~iiG~-G~QA~~~l~a~~~v~~~i---~~V~v~----~r~~~~a~~f~~~~~~~~-~~~~~v~~~~s~~eav~~A 224 (379)
T PRK06199 154 DSKVVGLLGP-GVMGKTILAAFMAVCPGI---DTIKIK----GRGQKSLDSFATWVAETY-PQITNVEVVDSIEEVVRGS 224 (379)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHhcCCc---cEEEEE----CCCHHHHHHHHHHHHHhc-CCCceEEEeCCHHHHHcCC
Confidence 3579999995 9999998887776 2223 236553 677788888888876432 1111467777788999999
Q ss_pred cEEEEe
Q 013466 174 EWALLI 179 (442)
Q Consensus 174 DiVIi~ 179 (442)
|+|+.+
T Consensus 225 DIVvta 230 (379)
T PRK06199 225 DIVTYC 230 (379)
T ss_pred CEEEEc
Confidence 999864
No 364
>PRK06914 short chain dehydrogenase; Provisional
Probab=92.15 E-value=1.7 Score=42.16 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..|.|+||+|.+|.+++..|+..|.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~ 28 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY 28 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC
Confidence 4689999999999999999998774
No 365
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.14 E-value=0.72 Score=46.01 Aligned_cols=67 Identities=16% Similarity=0.047 Sum_probs=41.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||+|+|+ |.+|..++..|...|. .|.+. +++.+++.. +.++. . ..+. ..+..+.++++|+
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G~-----~V~v~----~R~~~~~~~-~~~~g--~----~~~~-~~~l~~~l~~aDi 212 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALGA-----RVFVG----ARSSADLAR-ITEMG--L----IPFP-LNKLEEKVAEIDI 212 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHH-HHHCC--C----eeec-HHHHHHHhccCCE
Confidence 359999995 9999999999998773 25442 555444321 11111 0 0111 1234567899999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
||.+.
T Consensus 213 Vint~ 217 (287)
T TIGR02853 213 VINTI 217 (287)
T ss_pred EEECC
Confidence 99974
No 366
>PRK07574 formate dehydrogenase; Provisional
Probab=92.12 E-value=0.55 Score=48.89 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=53.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
++|+||| .|.||..++..|..-|. .|.. + |+.....+ ...++ .+....+..+.+++||+|
T Consensus 193 ktVGIvG-~G~IG~~vA~~l~~fG~-----~V~~--~--dr~~~~~~-~~~~~---------g~~~~~~l~ell~~aDvV 252 (385)
T PRK07574 193 MTVGIVG-AGRIGLAVLRRLKPFDV-----KLHY--T--DRHRLPEE-VEQEL---------GLTYHVSFDSLVSVCDVV 252 (385)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEEE--E--CCCCCchh-hHhhc---------CceecCCHHHHhhcCCEE
Confidence 6899999 59999999999987553 2332 3 33221111 11111 122234567889999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++.... . ..+-.++. .+.+... ++++++||++
T Consensus 253 ~l~lPl-----t------~~T~~li~--~~~l~~m-k~ga~lIN~a 284 (385)
T PRK07574 253 TIHCPL-----H------PETEHLFD--ADVLSRM-KRGSYLVNTA 284 (385)
T ss_pred EEcCCC-----C------HHHHHHhC--HHHHhcC-CCCcEEEECC
Confidence 997331 1 11122221 1333443 5788999887
No 367
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=92.10 E-value=1.9 Score=40.81 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|+||+.++..|+..+.
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~ 27 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGW 27 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 4899999999999999999998774
No 368
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=92.09 E-value=1.9 Score=41.22 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=33.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
.++|.|+||+|+||.+++..|+..|. .+.+ .+++.+.++..+.++.
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~-----~vv~----~~r~~~~~~~~~~~l~ 56 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGA-----SVVV----SDINADAANHVVDEIQ 56 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999999874 2444 2444455555555554
No 369
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.06 E-value=1.7 Score=41.96 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=32.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
..+|.|+||+|+||..++..|+..|. .+.+. +++.+.+.....++.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~ 54 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGA-----NVAVA----SRSQEKVDAAVAQLQ 54 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 35899999999999999999998774 24442 444445554444443
No 370
>PRK06701 short chain dehydrogenase; Provisional
Probab=92.06 E-value=0.54 Score=46.48 Aligned_cols=136 Identities=14% Similarity=0.036 Sum_probs=69.9
Q ss_pred eeeEEeecccchHH---hhh-ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhc
Q 013466 76 GVFCLTYDLKAEEE---TKS-WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (442)
Q Consensus 76 ~v~~~~~~~~~~~~---~~~-~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~ 151 (442)
|.--+||-+++-.. +.+ ..+.++|.|+||+|.||.+++..|+..|. .+.+.... . ...++.....+..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~k~iLItGasggIG~~la~~l~~~G~-----~V~l~~r~--~-~~~~~~~~~~~~~ 93 (290)
T PRK06701 22 GIESLMNPLPQFEAPNYKGSGKLKGKVALITGGDSGIGRAVAVLFAKEGA-----DIAIVYLD--E-HEDANETKQRVEK 93 (290)
T ss_pred ChhhhCCcccCCCccccccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEEeCC--c-chHHHHHHHHHHh
Confidence 66666666533111 111 12236899999999999999999998774 24443221 1 1223333333321
Q ss_pred ccCCCcccEEE-ecC--cc-----------cccCCCcEEEEeCCcCC--CCC--CcH---HhHHHHHHHHHHHHHHHHHh
Q 013466 152 SLFPLLREVKI-GIN--PY-----------ELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQIFAEQGKALNA 210 (442)
Q Consensus 152 ~~~~~~~~v~i-~~~--~~-----------eal~dADiVIi~ag~~~--kpg--~~r---~dll~~N~~Ii~~i~~~I~~ 210 (442)
. . .++.+ ..| +. +.+...|+||..+|... .+- .+. ...+..|..-...+.+.+..
T Consensus 94 ~--~--~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~ 169 (290)
T PRK06701 94 E--G--VKCLLIPGDVSDEAFCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALP 169 (290)
T ss_pred c--C--CeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1 1 11211 111 11 11235799998887532 111 111 23466666655666655554
Q ss_pred hhCCCeEEEEeCC
Q 013466 211 VASRNVKVIVVGN 223 (442)
Q Consensus 211 ~a~p~a~vivvtN 223 (442)
+-.+.+.+|+++.
T Consensus 170 ~~~~~g~iV~isS 182 (290)
T PRK06701 170 HLKQGSAIINTGS 182 (290)
T ss_pred HHhhCCeEEEEec
Confidence 3223456776665
No 371
>PRK08324 short chain dehydrogenase; Validated
Probab=92.03 E-value=2 Score=47.97 Aligned_cols=45 Identities=33% Similarity=0.296 Sum_probs=32.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
.+|.|+||+|+||..++..|+..|. .|.+. +++.+.++..+.++.
T Consensus 423 k~vLVTGasggIG~~la~~L~~~Ga-----~Vvl~----~r~~~~~~~~~~~l~ 467 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAEGA-----CVVLA----DLDEEAAEAAAAELG 467 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcC-----EEEEE----eCCHHHHHHHHHHHh
Confidence 6899999999999999999998874 25442 455555555544443
No 372
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=91.99 E-value=1.2 Score=43.76 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
|+||+|||+ |.||..++..|...+.
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~ 25 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPD 25 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCC
Confidence 579999996 9999999998887643
No 373
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.97 E-value=0.39 Score=46.45 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=26.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEec
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (442)
..||.|+|+ |++|+.++..|+..|+ + .+.|.|.
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar~GV-g---~i~LvD~ 43 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALARSGV-G---KLTLIDF 43 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCC-C---EEEEECC
Confidence 358999995 9999999999999996 2 3555443
No 374
>PRK08589 short chain dehydrogenase; Validated
Probab=91.96 E-value=3.1 Score=40.38 Aligned_cols=115 Identities=10% Similarity=0.049 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcc--------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~-------- 167 (442)
.+++.|+||+|+||.+++..|+..|. .+.+. +++ +.++..+.++.+.. .....+..-..+.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~-----~vi~~----~r~-~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~ 74 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA-----YVLAV----DIA-EAVSETVDKIKSNG-GKAKAYHVDISDEQQVKDFAS 74 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----eCc-HHHHHHHHHHHhcC-CeEEEEEeecCCHHHHHHHHH
Confidence 35799999999999999999999874 24442 444 44555555554321 0000011101111
Q ss_pred ---cccCCCcEEEEeCCcCCCCC----CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ---ELFEDAEWALLIGAKPRGPG----MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ---eal~dADiVIi~ag~~~kpg----~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|....++ .+. ...+..|. .+++.+.+.+.+ .++.|++++..
T Consensus 75 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~---~~g~iv~isS~ 142 (272)
T PRK08589 75 EIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMME---QGGSIINTSSF 142 (272)
T ss_pred HHHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH---cCCEEEEeCch
Confidence 12345799999888643211 111 12233443 334455555544 23677777653
No 375
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.96 E-value=0.47 Score=47.28 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=47.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec--CcccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~--~~~eal~dA 173 (442)
..+|.|+|| |+.|.++++.|+..|.- .|.+ .+++.++++.++.++.... +.. .+.... +..+.+.++
T Consensus 127 ~k~vlilGa-GGaarAi~~aL~~~g~~----~i~i----~nR~~~ka~~La~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 195 (283)
T PRK14027 127 LDSVVQVGA-GGVGNAVAYALVTHGVQ----KLQV----ADLDTSRAQALADVINNAV-GRE-AVVGVDARGIEDVIAAA 195 (283)
T ss_pred CCeEEEECC-cHHHHHHHHHHHHCCCC----EEEE----EcCCHHHHHHHHHHHhhcc-Ccc-eEEecCHhHHHHHHhhc
Confidence 358999996 99999999999987752 3555 3677788887776654221 110 111111 112356789
Q ss_pred cEEEEeC
Q 013466 174 EWALLIG 180 (442)
Q Consensus 174 DiVIi~a 180 (442)
|+||-+-
T Consensus 196 divINaT 202 (283)
T PRK14027 196 DGVVNAT 202 (283)
T ss_pred CEEEEcC
Confidence 9999863
No 376
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=91.96 E-value=2.3 Score=41.01 Aligned_cols=114 Identities=10% Similarity=-0.038 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------ 166 (442)
..++.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++.... .++.. ..| +
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~-----~vv~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 76 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGA-----TIVFN----DINQELVDKGLAAYRELG----IEAHGYVCDVTDEDGVQA 76 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHHHHhcC----CceEEEEcCCCCHHHHHH
Confidence 35799999999999999999998874 24442 444555555555453211 11211 111 1
Q ss_pred -----ccccCCCcEEEEeCCcCC-CCC-C-cH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 -----YELFEDAEWALLIGAKPR-GPG-M-ER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~-kpg-~-~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|++|..+|... .+- . +. ...+..|.. +.+.+.+.+.+ ...+.|++++..
T Consensus 77 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~g~iv~isS~ 147 (265)
T PRK07097 77 MVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK--KGHGKIINICSM 147 (265)
T ss_pred HHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh--cCCcEEEEEcCc
Confidence 122345799999887532 121 1 11 122334432 33344455544 245677777764
No 377
>PRK06179 short chain dehydrogenase; Provisional
Probab=91.95 E-value=1.5 Score=42.22 Aligned_cols=26 Identities=27% Similarity=0.128 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..+|.|+||+|+||.+++..|+..|.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~ 29 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY 29 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC
Confidence 35799999999999999999998874
No 378
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=91.94 E-value=2.2 Score=40.35 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|.+|+.++..|+..|.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~ 26 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA 26 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC
Confidence 4799999999999999999998774
No 379
>PRK06057 short chain dehydrogenase; Provisional
Probab=91.94 E-value=2.6 Score=40.23 Aligned_cols=26 Identities=19% Similarity=0.075 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..+|.|+||+|+||.+++..|+..|.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~ 32 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGA 32 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC
Confidence 46899999999999999999998774
No 380
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.93 E-value=0.94 Score=47.01 Aligned_cols=78 Identities=12% Similarity=0.085 Sum_probs=47.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC----------CcccEEEecC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP----------LLREVKIGIN 165 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~----------~~~~v~i~~~ 165 (442)
..+|+||| .|-||-.+|-..+..|. ++ .- .|+|..+.+.+-.--.+..-+ -..+.+.++
T Consensus 9 ~~~I~ViG-LGYVGLPlA~~fA~~G~-----~V--iG--~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTt- 77 (436)
T COG0677 9 SATIGVIG-LGYVGLPLAAAFASAGF-----KV--IG--VDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATT- 77 (436)
T ss_pred ceEEEEEc-cccccHHHHHHHHHcCC-----ce--Ee--EeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEec-
Confidence 47999999 79999999999999885 12 12 244444433221100000000 012455544
Q ss_pred cccccCCCcEEEEeCCcCC
Q 013466 166 PYELFEDAEWALLIGAKPR 184 (442)
Q Consensus 166 ~~eal~dADiVIi~ag~~~ 184 (442)
+.+.++.||++|++.-.|.
T Consensus 78 d~~~l~~~dv~iI~VPTPl 96 (436)
T COG0677 78 DPEELKECDVFIICVPTPL 96 (436)
T ss_pred ChhhcccCCEEEEEecCCc
Confidence 6788889999999876664
No 381
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.92 E-value=2.2 Score=41.65 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+..||.|||| |++|+.++..|+..|+
T Consensus 9 ~~~~~V~vvG~-GGlGs~v~~~Lar~G~ 35 (244)
T TIGR03736 9 SRPVSVVLVGA-GGTGSQVIAGLARLHH 35 (244)
T ss_pred hCCCeEEEEcC-ChHHHHHHHHHHHccc
Confidence 45689999995 9999999999998763
No 382
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=91.91 E-value=2 Score=43.31 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGE 120 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~ 120 (442)
+++||+||| +|+||..++..+...+
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~~ 27 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRSE 27 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcCC
Confidence 458999999 6999999888887643
No 383
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=91.89 E-value=0.57 Score=49.35 Aligned_cols=92 Identities=13% Similarity=0.122 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
...+|+|+|+ |.||..++..|...|. .|.+. |++..++...+++ .+ .+ .+..++++++|
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga-----~ViV~----d~dp~ra~~A~~~------G~----~v-~~l~eal~~aD 269 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGA-----RVIVT----EVDPICALQAAMD------GF----RV-MTMEEAAELGD 269 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-----EEEEE----cCCchhhHHHHhc------CC----Ee-cCHHHHHhCCC
Confidence 3469999995 9999999999998774 25553 3333333222221 11 11 12457788999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+||.+.| |..++..- .+... .+++++++++-+.
T Consensus 270 VVI~aTG---------------~~~vI~~~--~~~~m-K~GailiNvG~~d 302 (425)
T PRK05476 270 IFVTATG---------------NKDVITAE--HMEAM-KDGAILANIGHFD 302 (425)
T ss_pred EEEECCC---------------CHHHHHHH--HHhcC-CCCCEEEEcCCCC
Confidence 9988755 22333321 22222 4788999998553
No 384
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.86 E-value=3.5 Score=38.69 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+|.|+||+|+||+.++..|+..|.
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~ 30 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGA 30 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998775
No 385
>PRK05599 hypothetical protein; Provisional
Probab=91.83 E-value=1.5 Score=42.02 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=62.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c--------
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P-------- 166 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~-------- 166 (442)
.+.|+||+++||..++..|++ +. .+.+. +++.+.++..+.++...... .+. +..| +
T Consensus 2 ~vlItGas~GIG~aia~~l~~-g~-----~Vil~----~r~~~~~~~~~~~l~~~~~~---~~~~~~~Dv~d~~~v~~~~ 68 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLCH-GE-----DVVLA----ARRPEAAQGLASDLRQRGAT---SVHVLSFDAQDLDTHRELV 68 (246)
T ss_pred eEEEEeCccHHHHHHHHHHhC-CC-----EEEEE----eCCHHHHHHHHHHHHhccCC---ceEEEEcccCCHHHHHHHH
Confidence 578999999999999999984 42 25552 45667777777777532100 111 1111 1
Q ss_pred ---ccccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 ---YELFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ---~eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+..-|++|..+|...... .+. .+.+..|. .+.+.+.+.+.+. +.++.|++++.-
T Consensus 69 ~~~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-~~~g~Iv~isS~ 138 (246)
T PRK05599 69 KQTQELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQ-TAPAAIVAFSSI 138 (246)
T ss_pred HHHHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhc-CCCCEEEEEecc
Confidence 223456899999888642211 111 12233332 2333444555543 235777777754
No 386
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=91.82 E-value=2.3 Score=40.19 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..++.|+||+|.||++++..|+..+.
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~ 31 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA 31 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 35899999999999999999998774
No 387
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=91.76 E-value=0.67 Score=51.45 Aligned_cols=114 Identities=18% Similarity=0.101 Sum_probs=62.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh--hhHHHHHHHHhcccCCCcccEEEe-cC--ccc--
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--QALEGVAMELEDSLFPLLREVKIG-IN--PYE-- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~--~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e-- 168 (442)
++||.|+||+|.||++++..|+..+. +. .|.. + ++.. ..+..... .. . ..++.+. .| +.+
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~-~~--~V~~--~--d~~~~~~~~~~l~~-~~--~---~~~v~~~~~Dl~d~~~~ 72 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYP-DY--KIVV--L--DKLDYCSNLKNLNP-SK--S---SPNFKFVKGDIASADLV 72 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCC-CC--EEEE--E--eCCCccchhhhhhh-cc--c---CCCeEEEECCCCChHHH
Confidence 57999999999999999999998642 11 1322 2 2110 11111100 00 0 0122221 11 111
Q ss_pred --c--cCCCcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 --L--FEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 --a--l~dADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
. ..+.|+||.+|+...... ....+....|..-...+.+.+++. +.-..+|.+|-
T Consensus 73 ~~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~vkr~I~~SS 132 (668)
T PLN02260 73 NYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVT-GQIRRFIHVST 132 (668)
T ss_pred HHHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEEcc
Confidence 1 257999999988643211 123456677887778888877774 22235666664
No 388
>PRK08862 short chain dehydrogenase; Provisional
Probab=91.76 E-value=3.5 Score=39.20 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=33.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
...+.|+||++++|..++..|+..|. .+.+ .+++.+.++..+.++.
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~l~~~~~~i~ 50 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA-----TLIL----CDQDQSALKDTYEQCS 50 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHH
Confidence 35789999999999999999999885 2544 2555666665555443
No 389
>PRK12320 hypothetical protein; Provisional
Probab=91.71 E-value=0.29 Score=54.60 Aligned_cols=100 Identities=13% Similarity=0.112 Sum_probs=55.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dADi 175 (442)
|||.|+||+|.||++++..|+..|. .|.. + ++.... +.+....+. ...+. ....++++++|+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~-----~Vi~--l--dr~~~~-------~~~~~ve~v-~~Dl~d~~l~~al~~~D~ 63 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH-----TVSG--I--AQHPHD-------ALDPRVDYV-CASLRNPVLQELAGEADA 63 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-----EEEE--E--eCChhh-------cccCCceEE-EccCCCHHHHHHhcCCCE
Confidence 5899999999999999999998774 2333 2 221111 000000000 00010 012345678999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
||..++.. +.. -...|..-...+.+.+++. + ..++.+|
T Consensus 64 VIHLAa~~--~~~----~~~vNv~Gt~nLleAA~~~-G--vRiV~~S 101 (699)
T PRK12320 64 VIHLAPVD--TSA----PGGVGITGLAHVANAAARA-G--ARLLFVS 101 (699)
T ss_pred EEEcCccC--ccc----hhhHHHHHHHHHHHHHHHc-C--CeEEEEE
Confidence 99987642 111 1135666677777777664 2 3555555
No 390
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=91.68 E-value=0.58 Score=48.44 Aligned_cols=79 Identities=23% Similarity=0.193 Sum_probs=47.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v 160 (442)
..||.|||+ |++|+.++..|+..|+- .|.|.|.|. |....+++..+..|.... +.. ++
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~Gvg----~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n-p~v-~i 113 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASAGVG----TITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ-PDI-RV 113 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCC----EEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC-CCC-ee
Confidence 358999995 99999999999999962 255544331 111234555555554433 211 22
Q ss_pred EE-----ec-CcccccCCCcEEEEeCC
Q 013466 161 KI-----GI-NPYELFEDAEWALLIGA 181 (442)
Q Consensus 161 ~i-----~~-~~~eal~dADiVIi~ag 181 (442)
.. .. +..+.++++|+||-+..
T Consensus 114 ~~~~~~i~~~~~~~~~~~~DlVid~~D 140 (370)
T PRK05600 114 NALRERLTAENAVELLNGVDLVLDGSD 140 (370)
T ss_pred EEeeeecCHHHHHHHHhCCCEEEECCC
Confidence 21 11 12356899999987643
No 391
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=91.59 E-value=2.4 Score=40.79 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=33.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
.++|.|+||+++||.+++..|+..|. .+.+. ..++.+.++..+.++.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~-----~v~~~---~~~~~~~~~~~~~~~~ 54 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGV-----NIAFT---YNSNVEEANKIAEDLE 54 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE---cCCCHHHHHHHHHHHH
Confidence 35889999999999999999999775 24442 1234455665555554
No 392
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=91.57 E-value=0.57 Score=47.36 Aligned_cols=90 Identities=12% Similarity=0.170 Sum_probs=53.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.+|+||| .|.||..++..|..-|. .+.. + ++......+ .. ......+..+.+++||+|
T Consensus 137 ~tvgIvG-~G~IG~~vA~~l~afG~-----~V~~--~--~~~~~~~~~----~~--------~~~~~~~l~e~l~~aDvv 194 (312)
T PRK15469 137 FTIGILG-AGVLGSKVAQSLQTWGF-----PLRC--W--SRSRKSWPG----VQ--------SFAGREELSAFLSQTRVL 194 (312)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE--E--eCCCCCCCC----ce--------eecccccHHHHHhcCCEE
Confidence 6999999 59999999999997664 2333 3 222111110 00 011112457889999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++... .. ..|..++. .+.+.+. ++++++||++
T Consensus 195 v~~lP-----lt------~~T~~li~--~~~l~~m-k~ga~lIN~a 226 (312)
T PRK15469 195 INLLP-----NT------PETVGIIN--QQLLEQL-PDGAYLLNLA 226 (312)
T ss_pred EECCC-----CC------HHHHHHhH--HHHHhcC-CCCcEEEECC
Confidence 99733 11 11223332 2344554 5889999988
No 393
>PRK12743 oxidoreductase; Provisional
Probab=91.57 E-value=4.8 Score=38.52 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+|.|+||+|+||.+++..|+..|.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~ 27 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF 27 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 4799999999999999999999874
No 394
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=91.57 E-value=2.9 Score=39.58 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|.||.+++..|+..|.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~ 30 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGA 30 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999999874
No 395
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=91.55 E-value=1.2 Score=45.73 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHH-HhcccCCCcccEEEecCcccccCCCcEEEEe
Q 013466 109 ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFPLLREVKIGINPYELFEDAEWALLI 179 (442)
Q Consensus 109 G~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~D-L~~~~~~~~~~v~i~~~~~eal~dADiVIi~ 179 (442)
|..++..|+..|. +|.++ |++.+.++....+ +.. ..+++.++..+++++||+||++
T Consensus 32 G~~MA~~La~aG~-----~V~v~----Dr~~~~l~~~~~~~l~~------~Gi~~asd~~eaa~~ADvVIla 88 (342)
T PRK12557 32 GSRMAIEFAEAGH-----DVVLA----EPNRSILSEELWKKVED------AGVKVVSDDAEAAKHGEIHILF 88 (342)
T ss_pred HHHHHHHHHhCCC-----eEEEE----ECCHHHhhHHHHHHHHH------CCCEEeCCHHHHHhCCCEEEEE
Confidence 7778888888773 25554 3444432211111 211 1245556777889999999988
No 396
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=91.51 E-value=3 Score=39.85 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+++.|+||+|+||.+++..|+..|.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~ 33 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA 33 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999999874
No 397
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=91.49 E-value=3.7 Score=36.16 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=66.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch--hhhHHHHHHHHhcccCCCcccEEEec-C--c------
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSLFPLLREVKIGI-N--P------ 166 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~--~~~l~g~a~DL~~~~~~~~~~v~i~~-~--~------ 166 (442)
.+.|+||+|+||..++..|+..+-. .+.+. .++ .+.+.....++.... .++.+.. | +
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~----~v~~~----~r~~~~~~~~~l~~~l~~~~----~~~~~~~~D~~~~~~~~~ 69 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGAR----VVILT----SRSEDSEGAQELIQELKAPG----AKITFIECDLSDPESIRA 69 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTE----EEEEE----ESSCHHHHHHHHHHHHHHTT----SEEEEEESETTSHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCce----EEEEe----eecccccccccccccccccc----cccccccccccccccccc
Confidence 5789999999999999999998531 24443 333 445555555554221 1233221 1 1
Q ss_pred -----ccccCCCcEEEEeCCcCCCCCC-c-H----HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 167 -----YELFEDAEWALLIGAKPRGPGM-E-R----AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~kpg~-~-r----~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.+....-|++|..+|.....-. + . ...+..|..-...+.+.+.. . ..+.|++++-..
T Consensus 70 ~~~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~-~~g~iv~~sS~~ 137 (167)
T PF00106_consen 70 LIEEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-Q-GGGKIVNISSIA 137 (167)
T ss_dssp HHHHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-H-TTEEEEEEEEGG
T ss_pred cccccccccccccccccccccccccccccccchhhhhccccccceeeeeeehhee-c-cccceEEecchh
Confidence 2345589999999887652111 1 1 23445554444445555555 3 578888888654
No 398
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=91.48 E-value=0.17 Score=54.78 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=79.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHH-----cCCCCCC--CceEEEeccccc--hhhh---HHHHHHHHhcccCCCcccEEEec
Q 013466 97 VNIAVSGAAGMIANHLLFKLAA-----GEVLGPD--QPIALKLLGSER--SLQA---LEGVAMELEDSLFPLLREVKIGI 164 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~-----~~l~~~~--~~I~L~l~d~d~--~~~~---l~g~a~DL~~~~~~~~~~v~i~~ 164 (442)
.||.|.|| |..|..++..|+. .|+-.++ +.|.+ +|.+- ..++ +......+.+ ......
T Consensus 322 ~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~--vD~~GLi~~~r~~~l~~~k~~fa~-------~~~~~~ 391 (581)
T PLN03129 322 QRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWL--VDSKGLVTKSRKDSLQPFKKPFAH-------DHEPGA 391 (581)
T ss_pred ceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEE--EcCCCeEeCCCCccChHHHHHHHh-------hcccCC
Confidence 69999996 9999999998887 3542111 23433 33321 0111 2112111211 111225
Q ss_pred CcccccCC--CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch---hHHHHHHHHHCCCC
Q 013466 165 NPYELFED--AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSI 239 (442)
Q Consensus 165 ~~~eal~d--ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv---d~lt~~~~k~s~~~ 239 (442)
+..|++++ +|++|=+.+.+ |. +-+++.+.|.+++ ++.+|.-.+||. +....-+++.+.+
T Consensus 392 ~L~e~v~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~-~rPIIFaLSNPt~~~E~~pe~a~~~T~G- 455 (581)
T PLN03129 392 SLLEAVKAIKPTVLIGLSGVG---GT-----------FTKEVLEAMASLN-ERPIIFALSNPTSKAECTAEEAYTWTGG- 455 (581)
T ss_pred CHHHHHhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcC-CCCEEEECCCCCCCcCcCHHHHHHhhcC-
Confidence 67899999 89988665532 31 2245566667765 889999999996 6677777777633
Q ss_pred CcceeeccchhhHHH
Q 013466 240 PAKNFHALTRLDENR 254 (442)
Q Consensus 240 p~kvig~gT~LDs~R 254 (442)
+-+|.+|+-.+...
T Consensus 456 -~ai~AtGSPf~pv~ 469 (581)
T PLN03129 456 -RAIFASGSPFDPVE 469 (581)
T ss_pred -CEEEEeCCCCCCee
Confidence 34788888766554
No 399
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=91.46 E-value=1.1 Score=44.42 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=54.0
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC-CCcEEE
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DAEWAL 177 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~-dADiVI 177 (442)
|+|.|++|.||+++...|...|. .+.+. -++..+.... + +. .+..-....+... ++|+||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh-----~v~il----tR~~~~~~~~---~-~~------~v~~~~~~~~~~~~~~DavI 61 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH-----QVTIL----TRRPPKASQN---L-HP------NVTLWEGLADALTLGIDAVI 61 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC-----eEEEE----EcCCcchhhh---c-Cc------cccccchhhhcccCCCCEEE
Confidence 67999999999999999998774 24331 3333333221 1 11 1111111122222 799999
Q ss_pred EeCCcCC--CCCC-c-HHhHHHHHHHHHHHHHHHHHhh
Q 013466 178 LIGAKPR--GPGM-E-RAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 178 i~ag~~~--kpg~-~-r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
..||.|- +.+. . ...+...-+..-+.+++.|.+.
T Consensus 62 NLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~ 99 (297)
T COG1090 62 NLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAAS 99 (297)
T ss_pred ECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 9999774 3232 2 2334455566666777777753
No 400
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.44 E-value=1.6 Score=43.56 Aligned_cols=117 Identities=9% Similarity=0.006 Sum_probs=71.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec---------Cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~---------~~ 166 (442)
...|.|.||++++|..+++.++..+- .+++.++ |.+..+..+..+.+.-......+.++. .-
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~-----~~vl~Di----n~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGA-----KLVLWDI----NKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCC-----eEEEEec----cccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHH
Confidence 35888999999999999999999885 2667544 444444444444432000000111211 12
Q ss_pred ccccCCCcEEEEeCCc-CCCCCCc--HH---hHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 YELFEDAEWALLIGAK-PRGPGME--RA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ~eal~dADiVIi~ag~-~~kpg~~--r~---dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...+.|++|..||. +-++.++ +. ..++.| ..+++...+.+.+. .+|.|+.++-
T Consensus 109 k~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~--~~GHIV~IaS 173 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN--NNGHIVTIAS 173 (300)
T ss_pred HHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc--CCceEEEehh
Confidence 5678899999998885 4455432 22 123333 44678888998884 6887776653
No 401
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=91.44 E-value=0.64 Score=46.07 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=40.4
Q ss_pred EEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEEEeC
Q 013466 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIG 180 (442)
Q Consensus 101 IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIi~a 180 (442)
||| .|.+|..++..|+..+. ++.++ |++.++++.. ... ......+..++++++|+||++.
T Consensus 1 ~IG-lG~mG~~mA~~L~~~G~-----~V~v~----dr~~~~~~~l----~~~------g~~~~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIG-LGNMGGPMAANLLKAGH-----PVRVF----DLFPDAVEEA----VAA------GAQAAASPAEAAEGADRVITML 60 (288)
T ss_pred CCc-ccHhHHHHHHHHHhCCC-----eEEEE----eCCHHHHHHH----HHc------CCeecCCHHHHHhcCCEEEEeC
Confidence 589 59999999999998774 25553 4454554433 211 1233345667899999999974
Q ss_pred C
Q 013466 181 A 181 (442)
Q Consensus 181 g 181 (442)
.
T Consensus 61 p 61 (288)
T TIGR01692 61 P 61 (288)
T ss_pred C
Confidence 3
No 402
>PRK08264 short chain dehydrogenase; Validated
Probab=91.37 E-value=0.41 Score=45.13 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..+|.|+||+|++|++++..|+..|.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~ 31 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGA 31 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCc
Confidence 35899999999999999999998874
No 403
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=91.33 E-value=0.94 Score=44.45 Aligned_cols=131 Identities=15% Similarity=0.029 Sum_probs=75.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc----CCCCC--CCceEEEecccc--chhhhHHHHHHHHhcccCCCcccEEEecCccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG----EVLGP--DQPIALKLLGSE--RSLQALEGVAMELEDSLFPLLREVKIGINPYE 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~----~l~~~--~~~I~L~l~d~d--~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~e 168 (442)
.||.|+|| |..|-.++..|+.. |+-.+ .+.|.+.|..-= .+.+.+...-..+.+...+ .....+..|
T Consensus 26 ~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~----~~~~~~L~e 100 (255)
T PF03949_consen 26 QRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNP----EKDWGSLLE 100 (255)
T ss_dssp -EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSST----TT--SSHHH
T ss_pred cEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcc----cccccCHHH
Confidence 59999996 99999999999887 76210 024555431100 0112233233333332211 111156789
Q ss_pred ccCCC--cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh---HHHHHHHHHCCCCCcce
Q 013466 169 LFEDA--EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---TNALICLKNAPSIPAKN 243 (442)
Q Consensus 169 al~dA--DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd---~lt~~~~k~s~~~p~kv 243 (442)
+++++ |++|=+.+. +|. +-+++.+.|.+++ ++.+|+-.+||.. ....-+++.+.+ +-+
T Consensus 101 av~~~kPtvLIG~S~~---~g~-----------ft~evv~~Ma~~~-erPIIF~LSNPt~~aE~~peda~~~t~g--~ai 163 (255)
T PF03949_consen 101 AVKGAKPTVLIGLSGQ---GGA-----------FTEEVVRAMAKHN-ERPIIFPLSNPTPKAECTPEDAYEWTDG--RAI 163 (255)
T ss_dssp HHHCH--SEEEECSSS---TTS-----------S-HHHHHHCHHHS-SSEEEEE-SSSCGGSSS-HHHHHHTTTS--EEE
T ss_pred HHHhcCCCEEEEecCC---CCc-----------CCHHHHHHHhccC-CCCEEEECCCCCCcccCCHHHHHhhCCc--eEE
Confidence 99999 998877663 331 2356667777775 8999999999975 555566666532 134
Q ss_pred eeccch
Q 013466 244 FHALTR 249 (442)
Q Consensus 244 ig~gT~ 249 (442)
|.+|+-
T Consensus 164 ~AtGSp 169 (255)
T PF03949_consen 164 FATGSP 169 (255)
T ss_dssp EEESS-
T ss_pred EecCCc
Confidence 777765
No 404
>PRK13243 glyoxylate reductase; Reviewed
Probab=91.29 E-value=0.35 Score=49.31 Aligned_cols=90 Identities=13% Similarity=0.114 Sum_probs=52.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.+|+||| .|.||..++..|...|. .|.. + |++..... .. .. . +.. .+..+.+++||+|
T Consensus 151 ktvgIiG-~G~IG~~vA~~l~~~G~-----~V~~--~--d~~~~~~~--~~--~~---~----~~~-~~l~ell~~aDiV 208 (333)
T PRK13243 151 KTIGIIG-FGRIGQAVARRAKGFGM-----RILY--Y--SRTRKPEA--EK--EL---G----AEY-RPLEELLRESDFV 208 (333)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCC-----EEEE--E--CCCCChhh--HH--Hc---C----CEe-cCHHHHHhhCCEE
Confidence 6999999 59999999999987664 2433 3 33322211 11 11 1 111 3467789999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++..- ..+. +-.++.+ +.+... .+++++|+++
T Consensus 209 ~l~lP--~t~~---------T~~~i~~--~~~~~m-k~ga~lIN~a 240 (333)
T PRK13243 209 SLHVP--LTKE---------TYHMINE--ERLKLM-KPTAILVNTA 240 (333)
T ss_pred EEeCC--CChH---------HhhccCH--HHHhcC-CCCeEEEECc
Confidence 99743 1111 1122211 233333 5789999987
No 405
>PRK09134 short chain dehydrogenase; Provisional
Probab=91.27 E-value=2.5 Score=40.43 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|+||.+++..|+..+.
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~ 34 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGF 34 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 45899999999999999999998774
No 406
>PRK06949 short chain dehydrogenase; Provisional
Probab=91.25 E-value=0.64 Score=44.35 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=33.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
.++|.|+||+|.||++++..|+..|. .+.+. +++.++++....++.
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~-----~Vi~~----~r~~~~~~~~~~~l~ 54 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGA-----KVVLA----SRRVERLKELRAEIE 54 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 36899999999999999999998774 24442 445556655555543
No 407
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=91.22 E-value=0.17 Score=49.40 Aligned_cols=79 Identities=20% Similarity=0.215 Sum_probs=46.6
Q ss_pred CEEE-EEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc-ccchhhhHHHHHHHHhccc-CCCc-ccEEEecCcccccCC
Q 013466 97 VNIA-VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG-SERSLQALEGVAMELEDSL-FPLL-REVKIGINPYELFED 172 (442)
Q Consensus 97 ~KI~-IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d-~d~~~~~l~g~a~DL~~~~-~~~~-~~v~i~~~~~eal~d 172 (442)
.|++ |+||+|.||+-+...|...+.|+ |.. ++ +.++..+-.+.+..-.+.. .|.. ++.++...+.+.|.+
T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdhP~f~----ikv--LgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~e 77 (361)
T KOG4777|consen 4 KKSAPVLGATGAVGQRFISLLSDHPYFS----IKV--LGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNE 77 (361)
T ss_pred ccccceeeccchhHHHHHHHhccCCcce----eee--ecccccccCCceEecccchhcccccchhhhhhHhhcChhhccc
Confidence 4677 99999999999999999888764 322 31 2222222111111101110 0111 344555567889999
Q ss_pred CcEEEEeCC
Q 013466 173 AEWALLIGA 181 (442)
Q Consensus 173 ADiVIi~ag 181 (442)
||+|+...+
T Consensus 78 cDIvfsgld 86 (361)
T KOG4777|consen 78 CDIVFSGLD 86 (361)
T ss_pred ccEEEecCC
Confidence 999998755
No 408
>PRK05693 short chain dehydrogenase; Provisional
Probab=91.16 E-value=3.4 Score=39.95 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
|++|.|+||+|++|..++..|+..|.
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~ 26 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGY 26 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCC
Confidence 35799999999999999999998774
No 409
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=91.13 E-value=1.9 Score=42.27 Aligned_cols=109 Identities=17% Similarity=0.051 Sum_probs=59.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc----ccc
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----ELF 170 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----eal 170 (442)
||.|+||+|.||..++..|...+. .+.+.... . ..... ...++.+. . .+.. ..| +. +++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~-----~V~~~~~~-~--~~~~~-~~~~~~~~--~---~~~~~~~D~~~~~~~~~~~ 66 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH-----EVVVLDNL-S--NGSPE-ALKRGERI--T---RVTFVEGDLRDRELLDRLF 66 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC-----eEEEEeCC-C--ccchh-hhhhhccc--c---ceEEEECCCCCHHHHHHHH
Confidence 689999999999999999998764 24332111 1 11111 11111110 0 1111 111 11 223
Q ss_pred C--CCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 171 E--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 171 ~--dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+ +.|+||..+|....+ .....+.+..|+.....+.+.+.+. +. ..+++++
T Consensus 67 ~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~~v~~s 120 (328)
T TIGR01179 67 EEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQT-GV-KKFIFSS 120 (328)
T ss_pred HhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhc-CC-CEEEEec
Confidence 2 689999988854322 1233455677888888888877764 22 2444444
No 410
>PRK07060 short chain dehydrogenase; Provisional
Probab=91.13 E-value=2.5 Score=39.85 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~ 34 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA 34 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC
Confidence 36899999999999999999998774
No 411
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=91.03 E-value=0.79 Score=48.02 Aligned_cols=91 Identities=11% Similarity=0.115 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
...+|+|+|+ |.||..++..+...|. .+... |++..++. .+.. +.. .+ ....++++++|
T Consensus 194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga-----~ViV~----d~dp~r~~-~A~~--~G~-------~v-~~leeal~~aD 252 (406)
T TIGR00936 194 AGKTVVVAGY-GWCGKGIAMRARGMGA-----RVIVT----EVDPIRAL-EAAM--DGF-------RV-MTMEEAAKIGD 252 (406)
T ss_pred CcCEEEEECC-CHHHHHHHHHHhhCcC-----EEEEE----eCChhhHH-HHHh--cCC-------Ee-CCHHHHHhcCC
Confidence 3469999995 9999999999997664 24443 22333322 1111 111 11 12356789999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+||.+.| |..++..- .+... .+++++++++-.
T Consensus 253 VVItaTG---------------~~~vI~~~--~~~~m-K~GailiN~G~~ 284 (406)
T TIGR00936 253 IFITATG---------------NKDVIRGE--HFENM-KDGAIVANIGHF 284 (406)
T ss_pred EEEECCC---------------CHHHHHHH--HHhcC-CCCcEEEEECCC
Confidence 9988755 22334331 22222 468899998854
No 412
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=91.00 E-value=0.73 Score=48.03 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..||.|||+ |++|+.++..|+..|+
T Consensus 42 ~~~VlviG~-GGlGs~va~~La~~Gv 66 (392)
T PRK07878 42 NARVLVIGA-GGLGSPTLLYLAAAGV 66 (392)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHcCC
Confidence 359999995 9999999999999996
No 413
>PRK07411 hypothetical protein; Validated
Probab=90.97 E-value=0.75 Score=47.94 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=46.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v 160 (442)
..||.|||+ |++|+.++..|+..|+ + .|.|.|.|. |....+++..+..|.+.. +.. ++
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~~Gv-g---~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n-p~v-~v 110 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAAAGI-G---RIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN-PYC-QV 110 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC-C---EEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC-CCC-eE
Confidence 459999995 9999999999999997 2 255544321 011124444444444333 221 22
Q ss_pred EEec------CcccccCCCcEEEEeCC
Q 013466 161 KIGI------NPYELFEDAEWALLIGA 181 (442)
Q Consensus 161 ~i~~------~~~eal~dADiVIi~ag 181 (442)
.... +..+-++++|+||.+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~D~Vvd~~d 137 (390)
T PRK07411 111 DLYETRLSSENALDILAPYDVVVDGTD 137 (390)
T ss_pred EEEecccCHHhHHHHHhCCCEEEECCC
Confidence 2211 12345899999998744
No 414
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=90.89 E-value=0.71 Score=43.50 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=40.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc-CCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal-~dAD 174 (442)
.++|+|+| .|+||+.++..|...|. .|.+ .|++.++++..+.++. . ..+ +..+.+ .++|
T Consensus 28 gk~v~I~G-~G~vG~~~A~~L~~~G~-----~Vvv----~D~~~~~~~~~~~~~g-~-------~~v--~~~~l~~~~~D 87 (200)
T cd01075 28 GKTVAVQG-LGKVGYKLAEHLLEEGA-----KLIV----ADINEEAVARAAELFG-A-------TVV--APEEIYSVDAD 87 (200)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHcC-C-------EEE--cchhhccccCC
Confidence 46899999 59999999999999774 2444 2555555554433321 1 111 122333 3799
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+++.++.
T Consensus 88 v~vp~A~ 94 (200)
T cd01075 88 VFAPCAL 94 (200)
T ss_pred EEEeccc
Confidence 9986644
No 415
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.86 E-value=2.9 Score=39.57 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..+|.|+||+|.||++++..|+..+.
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~ 31 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS 31 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998774
No 416
>PRK08628 short chain dehydrogenase; Provisional
Probab=90.81 E-value=4.8 Score=38.35 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=23.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+|.|+||+|++|.+++..|+..|.
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~ 32 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGA 32 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCC
Confidence 5899999999999999999999885
No 417
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=90.80 E-value=1 Score=41.40 Aligned_cols=93 Identities=19% Similarity=0.199 Sum_probs=52.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|+||| .|.||..++..|..-|. .|.. + |+...... ...+. .+. ..+..+.++.||+
T Consensus 36 g~tvgIiG-~G~IG~~vA~~l~~fG~-----~V~~--~--d~~~~~~~----~~~~~------~~~-~~~l~ell~~aDi 94 (178)
T PF02826_consen 36 GKTVGIIG-YGRIGRAVARRLKAFGM-----RVIG--Y--DRSPKPEE----GADEF------GVE-YVSLDELLAQADI 94 (178)
T ss_dssp TSEEEEES-TSHHHHHHHHHHHHTT------EEEE--E--ESSCHHHH----HHHHT------TEE-ESSHHHHHHH-SE
T ss_pred CCEEEEEE-EcCCcCeEeeeeecCCc-----eeEE--e--cccCChhh----hcccc------cce-eeehhhhcchhhh
Confidence 36999999 59999999999998664 2433 2 33322211 01111 121 2356788999999
Q ss_pred EEEeCC-cCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 176 ALLIGA-KPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 176 VIi~ag-~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
|++... .+...++= |. +.+.+. ++++++||++--
T Consensus 95 v~~~~plt~~T~~li-------~~-------~~l~~m-k~ga~lvN~aRG 129 (178)
T PF02826_consen 95 VSLHLPLTPETRGLI-------NA-------EFLAKM-KPGAVLVNVARG 129 (178)
T ss_dssp EEE-SSSSTTTTTSB-------SH-------HHHHTS-TTTEEEEESSSG
T ss_pred hhhhhccccccceee-------ee-------eeeecc-ccceEEEeccch
Confidence 999743 22222221 11 122333 578999998843
No 418
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=90.75 E-value=0.36 Score=48.35 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=71.0
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcc---cEEEecCc------ccc
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR---EVKIGINP------YEL 169 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~---~v~i~~~~------~ea 169 (442)
.+|.||+.+||-++|..|+.+|+ .+.| +.|++++|+.++.|+++.. ..-. .+.++.++ .+.
T Consensus 52 AVVTGaTDGIGKayA~eLAkrG~-----nvvL----IsRt~~KL~~v~kEI~~~~-~vev~~i~~Dft~~~~~ye~i~~~ 121 (312)
T KOG1014|consen 52 AVVTGATDGIGKAYARELAKRGF-----NVVL----ISRTQEKLEAVAKEIEEKY-KVEVRIIAIDFTKGDEVYEKLLEK 121 (312)
T ss_pred EEEECCCCcchHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHHHh-CcEEEEEEEecCCCchhHHHHHHH
Confidence 46899999999999999999996 3555 5889999999999999775 2111 12223333 345
Q ss_pred cCCCcEEEE--eCCcCC-CCCC-------cHHhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 170 FEDAEWALL--IGAKPR-GPGM-------ERAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 170 l~dADiVIi--~ag~~~-kpg~-------~r~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+-|+=|+ .+|... -|.. +-.+.+..| ...-+-+.+.+.+ +..|.|++++--
T Consensus 122 l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~--r~~G~IvnigS~ 188 (312)
T KOG1014|consen 122 LAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVE--RKKGIIVNIGSF 188 (312)
T ss_pred hcCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhc--CCCceEEEeccc
Confidence 677777554 455432 2321 111122222 2234445566666 378888888743
No 419
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=90.68 E-value=0.78 Score=44.01 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..+|.|+||+|+||..++..|+..|.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~ 40 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGA 40 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998774
No 420
>PRK07201 short chain dehydrogenase; Provisional
Probab=90.67 E-value=2.4 Score=46.64 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ec--Cccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~--~~~e---- 168 (442)
.++|.|+||+|++|.+++..|+..|. .|.+. +++.+.++....++.... .++.+ .. .+.+
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~~~~ 437 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGA-----TVFLV----ARNGEALDELVAEIRAKG----GTAHAYTCDLTDSAAVDH 437 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHH
Confidence 35799999999999999999998874 25442 455566665555554221 11221 11 1111
Q ss_pred -------ccCCCcEEEEeCCcCCCCCC--------cHHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 -------LFEDAEWALLIGAKPRGPGM--------ERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~kpg~--------~r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...|++|..+|....... +-...+..|.. +++.+.+.+.+. ..+.|++++-
T Consensus 438 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~isS 509 (657)
T PRK07201 438 TVKDILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER--RFGHVVNVSS 509 (657)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCCEEEEECC
Confidence 23368999999886422110 11223445544 334444555542 3466777764
No 421
>PRK08226 short chain dehydrogenase; Provisional
Probab=90.67 E-value=2.1 Score=40.98 Aligned_cols=26 Identities=15% Similarity=0.048 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..++.|+||+|.||..++..|+..|.
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~ 31 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGA 31 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 36899999999999999999999874
No 422
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=90.65 E-value=0.87 Score=46.05 Aligned_cols=31 Identities=35% Similarity=0.398 Sum_probs=25.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEec
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (442)
||.|||+ |++|..++..|+..|+ + .|.|+|.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gv-g---~ItIvD~ 31 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGF-G---EIHIIDL 31 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcC-C---eEEEEcC
Confidence 6899995 9999999999999996 3 3666543
No 423
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=90.60 E-value=0.38 Score=47.78 Aligned_cols=74 Identities=24% Similarity=0.194 Sum_probs=45.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||.|+||+|.||||++-.|+..+. +.|++.-+.. +....++|....-..+....-....-++.+|-
T Consensus 27 ~lrI~itGgaGFIgSHLvdkLm~egh----~VIa~Dn~ft--------g~k~n~~~~~~~~~fel~~hdv~~pl~~evD~ 94 (350)
T KOG1429|consen 27 NLRILITGGAGFIGSHLVDKLMTEGH----EVIALDNYFT--------GRKENLEHWIGHPNFELIRHDVVEPLLKEVDQ 94 (350)
T ss_pred CcEEEEecCcchHHHHHHHHHHhcCC----eEEEEecccc--------cchhhcchhccCcceeEEEeechhHHHHHhhh
Confidence 47999999999999999999998883 3455543322 12222344331111122222223457889999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
|+..|.
T Consensus 95 IyhLAa 100 (350)
T KOG1429|consen 95 IYHLAA 100 (350)
T ss_pred hhhhcc
Confidence 987654
No 424
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=90.59 E-value=0.52 Score=47.98 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+|+||+|+||+|-.|..+...|...+-
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ 27 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD 27 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Confidence 378999999999999999999998775
No 425
>PLN02494 adenosylhomocysteinase
Probab=90.58 E-value=0.71 Score=49.15 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=55.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
-.+|+|+|+ |.||..++..+...|. .|.+. +++..++. .+.+ +.. .+ ....++++.+|+
T Consensus 254 GKtVvViGy-G~IGr~vA~~aka~Ga-----~VIV~----e~dp~r~~-eA~~--~G~-----~v---v~leEal~~ADV 312 (477)
T PLN02494 254 GKVAVICGY-GDVGKGCAAAMKAAGA-----RVIVT----EIDPICAL-QALM--EGY-----QV---LTLEDVVSEADI 312 (477)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----EEEEE----eCCchhhH-HHHh--cCC-----ee---ccHHHHHhhCCE
Confidence 469999995 9999999999987664 24442 33333322 1211 111 11 123567899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~ 227 (442)
||.+.|.. .++. ...+... .+++++++++-+.+.
T Consensus 313 VI~tTGt~---------------~vI~--~e~L~~M-K~GAiLiNvGr~~~e 346 (477)
T PLN02494 313 FVTTTGNK---------------DIIM--VDHMRKM-KNNAIVCNIGHFDNE 346 (477)
T ss_pred EEECCCCc---------------cchH--HHHHhcC-CCCCEEEEcCCCCCc
Confidence 99876521 2221 1223333 578999999986433
No 426
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=90.49 E-value=1.4 Score=44.14 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEe-ccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL-LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l-~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
+..|++.+|.+.+|+.++...-+.-|+ .+.+.- -+.+.+.+ ....+..+... ....++++.|..++++||
T Consensus 152 ~g~k~a~vGDgNNv~nSl~~~~a~~G~-----dv~ia~Pk~~~p~~~-~~~~a~~~a~~---~g~~i~~t~d~~eAv~gA 222 (310)
T COG0078 152 KGLKLAYVGDGNNVANSLLLAAAKLGM-----DVRIATPKGYEPDPE-VVEKAKENAKE---SGGKITLTEDPEEAVKGA 222 (310)
T ss_pred cCcEEEEEcCcchHHHHHHHHHHHhCC-----eEEEECCCcCCcCHH-HHHHHHHHHHh---cCCeEEEecCHHHHhCCC
Confidence 458999999877788877776666554 132210 00111111 22233332211 123788999999999999
Q ss_pred cEEEEe
Q 013466 174 EWALLI 179 (442)
Q Consensus 174 DiVIi~ 179 (442)
|+|..-
T Consensus 223 DvvyTD 228 (310)
T COG0078 223 DVVYTD 228 (310)
T ss_pred CEEEec
Confidence 998864
No 427
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=90.47 E-value=0.88 Score=49.76 Aligned_cols=83 Identities=22% Similarity=0.316 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc-chhh---hHHHHHHHHhcccCCCc-ccEEEecCcccc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQ---ALEGVAMELEDSLFPLL-REVKIGINPYEL 169 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d-~~~~---~l~g~a~DL~~~~~~~~-~~v~i~~~~~ea 169 (442)
+..||+|+| .|.+|++++..|+..|+- .|...+.|.. .|.. .+...|.|+.... ... .+.....+..+.
T Consensus 128 R~akVlVlG-~Gg~~s~lv~sL~~sG~~----~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v-~v~~i~~~~~~dl~ev 201 (637)
T TIGR03693 128 RNAKILAAG-SGDFLTKLVRSLIDSGFP----RFHAIVTDAEEHALDRIHELAEIAEETDDAL-LVQEIDFAEDQHLHEA 201 (637)
T ss_pred hcccEEEEe-cCchHHHHHHHHHhcCCC----cEEEEeccccchhhhHHHHHHHHHHHhCCCC-ceEeccCCcchhHHHh
Confidence 456999999 599999999999999974 2544333322 1112 1223333322110 000 011122345788
Q ss_pred cCCCcEEEEeCCcC
Q 013466 170 FEDAEWALLIGAKP 183 (442)
Q Consensus 170 l~dADiVIi~ag~~ 183 (442)
+++.|+||.++..|
T Consensus 202 ~~~~DiVi~vsDdy 215 (637)
T TIGR03693 202 FEPADWVLYVSDNG 215 (637)
T ss_pred hcCCcEEEEECCCC
Confidence 99999999987644
No 428
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=90.45 E-value=4.1 Score=39.06 Aligned_cols=26 Identities=4% Similarity=0.179 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..++.|+||+|.||.+++..|+..|.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~ 32 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKA 32 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999999874
No 429
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=90.40 E-value=0.71 Score=45.94 Aligned_cols=95 Identities=19% Similarity=0.269 Sum_probs=60.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--CCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--dAD 174 (442)
|||.|+|+.|++|+.|...|. .+. +-+.+ ++.. +|+.+... ..+.++ .-|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~----~v~a~-----~~~~-------~Ditd~~~-----------v~~~i~~~~PD 52 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF----EVIAT-----DRAE-------LDITDPDA-----------VLEVIRETRPD 52 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc----eEEec-----cCcc-------ccccChHH-----------HHHHHHhhCCC
Confidence 469999999999999999887 221 11222 2111 33433220 123333 358
Q ss_pred EEEEeCCcCC--CCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 175 WALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 175 iVIi~ag~~~--kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+||.+|.+.. +.-.++..-+..|+.-...+++..+++ ++++|-+|
T Consensus 53 vVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~---ga~lVhiS 99 (281)
T COG1091 53 VVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEV---GARLVHIS 99 (281)
T ss_pred EEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHh---CCeEEEee
Confidence 9999988764 333456777788998889999888875 46666665
No 430
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=90.39 E-value=0.73 Score=38.82 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=42.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--CC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DA 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--dA 173 (442)
+||+|||+ |.+|......+... +.+ +.+.+ + |++.++++..+... .+..+++..+.++ +.
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~---~v~~v--~--d~~~~~~~~~~~~~---------~~~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDF---EVVAV--C--DPDPERAEAFAEKY---------GIPVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTE---EEEEE--E--CSSHHHHHHHHHHT---------TSEEESSHHHHHHHTTE
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCc---EEEEE--E--eCCHHHHHHHHHHh---------cccchhHHHHHHHhhcC
Confidence 58999995 99999998888876 322 11223 2 55555555442222 1235566666666 79
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+|+++..
T Consensus 64 D~V~I~tp 71 (120)
T PF01408_consen 64 DAVIIATP 71 (120)
T ss_dssp SEEEEESS
T ss_pred CEEEEecC
Confidence 99999843
No 431
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=90.35 E-value=2.9 Score=42.74 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++||+|.|+ |.||..+...|..++.
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~ 25 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGR 25 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCC
Confidence 479999997 9999999999887653
No 432
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=90.27 E-value=1.7 Score=43.42 Aligned_cols=73 Identities=15% Similarity=0.041 Sum_probs=46.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch---hhhHHHHHHHHhcccCCCcccEEEec-Cc----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS---LQALEGVAMELEDSLFPLLREVKIGI-NP----Y 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~---~~~l~g~a~DL~~~~~~~~~~v~i~~-~~----~ 167 (442)
..++.|+|| |+.+.++++.|+..+.- .|.+. +++ .++++.++.++.+.. . ..+.+.. +. .
T Consensus 124 ~k~vlvlGa-GGaarAi~~~l~~~g~~----~i~i~----nRt~~~~~ka~~la~~~~~~~-~--~~~~~~~~~~~~~l~ 191 (288)
T PRK12749 124 GKTMVLLGA-GGASTAIGAQGAIEGLK----EIKLF----NRRDEFFDKALAFAQRVNENT-D--CVVTVTDLADQQAFA 191 (288)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCC----EEEEE----eCCccHHHHHHHHHHHhhhcc-C--ceEEEechhhhhhhh
Confidence 358999996 99999999999987752 36553 455 346777766664321 1 1122221 11 2
Q ss_pred cccCCCcEEEEeC
Q 013466 168 ELFEDAEWALLIG 180 (442)
Q Consensus 168 eal~dADiVIi~a 180 (442)
+++.++|+||.+-
T Consensus 192 ~~~~~aDivINaT 204 (288)
T PRK12749 192 EALASADILTNGT 204 (288)
T ss_pred hhcccCCEEEECC
Confidence 3677899999863
No 433
>PLN02928 oxidoreductase family protein
Probab=90.27 E-value=0.52 Score=48.30 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=53.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC-CCcccEEEecCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-PLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~-~~~~~v~i~~~~~eal~dADi 175 (442)
.+|+||| .|.||..++..|..-|. .|.. + |++..........+..... .+........+..+.++.||+
T Consensus 160 ktvGIiG-~G~IG~~vA~~l~afG~-----~V~~--~--dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDi 229 (347)
T PLN02928 160 KTVFILG-YGAIGIELAKRLRPFGV-----KLLA--T--RRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADI 229 (347)
T ss_pred CEEEEEC-CCHHHHHHHHHHhhCCC-----EEEE--E--CCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCE
Confidence 6999999 59999999999987664 2433 2 3321111100000000000 000000112356789999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
|++... ..+. |-.++. .+.+... .|++++|+++
T Consensus 230 Vvl~lP--lt~~---------T~~li~--~~~l~~M-k~ga~lINva 262 (347)
T PLN02928 230 VVLCCT--LTKE---------TAGIVN--DEFLSSM-KKGALLVNIA 262 (347)
T ss_pred EEECCC--CChH---------hhcccC--HHHHhcC-CCCeEEEECC
Confidence 999743 1111 112221 2334443 5889999997
No 434
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.26 E-value=4.7 Score=37.97 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..++.|+||+|.||..++..|+..|.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~ 30 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGA 30 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
No 435
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=90.25 E-value=1.5 Score=44.84 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVL 122 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~ 122 (442)
+||+|+||+|.+|..++..|...+.+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~ 26 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYF 26 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCc
Confidence 58999999999999999988876643
No 436
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=90.23 E-value=0.77 Score=46.76 Aligned_cols=74 Identities=24% Similarity=0.199 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
....++|||+ |..+..-+..+..---+ ++|.++ +++.+..+..+.++.... + ..+....+..+++++||
T Consensus 129 da~~laiIGa-G~qA~~ql~a~~~v~~~---~~I~i~----~r~~~~~e~~a~~l~~~~-~--~~v~a~~s~~~av~~aD 197 (330)
T COG2423 129 DASTLAIIGA-GAQARTQLEALKAVRDI---REIRVY----SRDPEAAEAFAARLRKRG-G--EAVGAADSAEEAVEGAD 197 (330)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhhCCc---cEEEEE----cCCHHHHHHHHHHHHhhc-C--ccceeccCHHHHhhcCC
Confidence 3568999995 99988877777653333 346663 667788888888887543 2 24555566789999999
Q ss_pred EEEEe
Q 013466 175 WALLI 179 (442)
Q Consensus 175 iVIi~ 179 (442)
+|+.+
T Consensus 198 iIvt~ 202 (330)
T COG2423 198 IVVTA 202 (330)
T ss_pred EEEEe
Confidence 99875
No 437
>PRK08605 D-lactate dehydrogenase; Validated
Probab=90.17 E-value=0.41 Score=48.72 Aligned_cols=63 Identities=21% Similarity=0.113 Sum_probs=38.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
-+||+|||+ |.||..++..|+. + ++- .|.. + |++.... .... +....+..+.+++||+
T Consensus 146 g~~VgIIG~-G~IG~~vA~~L~~-~-~g~--~V~~--~--d~~~~~~------~~~~-------~~~~~~l~ell~~aDv 203 (332)
T PRK08605 146 DLKVAVIGT-GRIGLAVAKIFAK-G-YGS--DVVA--Y--DPFPNAK------AATY-------VDYKDTIEEAVEGADI 203 (332)
T ss_pred CCEEEEECC-CHHHHHHHHHHHh-c-CCC--EEEE--E--CCCccHh------HHhh-------ccccCCHHHHHHhCCE
Confidence 369999995 9999999999953 2 221 2333 3 3322211 0100 1222356788999999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
|+++.
T Consensus 204 Ivl~l 208 (332)
T PRK08605 204 VTLHM 208 (332)
T ss_pred EEEeC
Confidence 99974
No 438
>PRK07775 short chain dehydrogenase; Provisional
Probab=90.16 E-value=4.1 Score=39.55 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++.|.|+||+|.||.+++..|+..|.
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G~ 35 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAGF 35 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 45899999999999999999998874
No 439
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=89.94 E-value=0.68 Score=46.37 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
||.|||| |++|..++..|+..|+
T Consensus 1 kVlVVGa-GGlG~eilknLal~Gv 23 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGF 23 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCC
Confidence 6899995 9999999999999996
No 440
>PRK08278 short chain dehydrogenase; Provisional
Probab=89.92 E-value=5.1 Score=38.95 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..++.|+||+|++|.+++..|+..|.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~ 31 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGA 31 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
No 441
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=89.90 E-value=5.7 Score=37.29 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+|.|+||+|++|.+++..|+..|.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~ 27 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY 27 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC
Confidence 4789999999999999999998773
No 442
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=89.86 E-value=1.5 Score=44.27 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.||+|+||+|-+|.-++..|...+.
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~ 26 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD 26 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC
Confidence 5899999999999999999998765
No 443
>PRK06046 alanine dehydrogenase; Validated
Probab=89.85 E-value=1 Score=45.60 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
...+|+|||+ |..|...+..+....-+ +.+.++ +++.++++..+.++.+.. + .++....+..+++. +|
T Consensus 128 ~~~~vgiiG~-G~qa~~h~~al~~~~~i---~~v~v~----~r~~~~~~~~~~~~~~~~-~--~~v~~~~~~~~~l~-aD 195 (326)
T PRK06046 128 DSKVVGIIGA-GNQARTQLLALSEVFDL---EEVRVY----DRTKSSAEKFVERMSSVV-G--CDVTVAEDIEEACD-CD 195 (326)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhhCCc---eEEEEE----CCCHHHHHHHHHHHHhhc-C--ceEEEeCCHHHHhh-CC
Confidence 3579999995 99999988888754322 235553 566677777776665321 1 23455555556676 99
Q ss_pred EEEEeC
Q 013466 175 WALLIG 180 (442)
Q Consensus 175 iVIi~a 180 (442)
+|+++-
T Consensus 196 iVv~aT 201 (326)
T PRK06046 196 ILVTTT 201 (326)
T ss_pred EEEEec
Confidence 999863
No 444
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=89.73 E-value=4.9 Score=40.00 Aligned_cols=117 Identities=16% Similarity=0.085 Sum_probs=59.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhh-hHHHHHHHHhcccC---CCc-ccEEEecCc------
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDSLF---PLL-REVKIGINP------ 166 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~-~l~g~a~DL~~~~~---~~~-~~v~i~~~~------ 166 (442)
+|.|+||+|.+|++++..|+..+... .|..... +.+.+ ..+.+...+..... ... .++.+..++
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~---~V~~l~R--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 75 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQA---KVICLVR--AASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRL 75 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCC---EEEEEEc--cCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccC
Confidence 58899999999999999999876211 1322111 11111 11111111111000 000 123322211
Q ss_pred -------ccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 167 -------YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 167 -------~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.+..+++|+||.+++... ....-.++...|..-...+.+...+. +.. .++.++
T Consensus 76 gl~~~~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~-~~~-~~v~iS 135 (367)
T TIGR01746 76 GLSDAEWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASG-RAK-PLHYVS 135 (367)
T ss_pred CcCHHHHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhC-CCc-eEEEEc
Confidence 223568999999887532 12233445567777677777666653 222 255544
No 445
>PRK12367 short chain dehydrogenase; Provisional
Probab=89.63 E-value=2.3 Score=41.07 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++.|+||+|++|.+++..|+..|.
T Consensus 15 k~~lITGas~gIG~ala~~l~~~G~ 39 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAKGA 39 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC
Confidence 5899999999999999999998874
No 446
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.63 E-value=1.7 Score=43.60 Aligned_cols=67 Identities=18% Similarity=0.012 Sum_probs=42.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||.|+|+ |.+|..++..|...|. .|.+. +++.++.+ .+.++. . +.....+..+.++++|+
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~Ga-----~V~v~----~r~~~~~~-~~~~~G-----~--~~~~~~~l~~~l~~aDi 213 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALGA-----NVTVG----ARKSAHLA-RITEMG-----L--SPFHLSELAEEVGKIDI 213 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHH-HHHHcC-----C--eeecHHHHHHHhCCCCE
Confidence 479999995 9999999999998763 25553 44433322 222221 1 11111234577899999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
||.+.
T Consensus 214 VI~t~ 218 (296)
T PRK08306 214 IFNTI 218 (296)
T ss_pred EEECC
Confidence 99984
No 447
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=89.45 E-value=1.7 Score=43.42 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=48.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~~~eal~dAD 174 (442)
..+|.|+|| |+.+.++++.|++.|.. .|.+ .+|+.++++.++..+.+.. . .+.. ...+.+...++|
T Consensus 126 ~~~vlilGA-GGAarAv~~aL~~~g~~----~i~V----~NRt~~ra~~La~~~~~~~-~---~~~~~~~~~~~~~~~~d 192 (283)
T COG0169 126 GKRVLILGA-GGAARAVAFALAEAGAK----RITV----VNRTRERAEELADLFGELG-A---AVEAAALADLEGLEEAD 192 (283)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHhhhcc-c---ccccccccccccccccC
Confidence 468999996 99999999999998862 3665 3777788887766665332 1 1111 112233333799
Q ss_pred EEEEeC
Q 013466 175 WALLIG 180 (442)
Q Consensus 175 iVIi~a 180 (442)
+||.+-
T Consensus 193 liINaT 198 (283)
T COG0169 193 LLINAT 198 (283)
T ss_pred EEEECC
Confidence 999863
No 448
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=89.44 E-value=0.7 Score=42.27 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=38.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|+|||. |.-|.+.+..|..+|+ ++.+-+.....+.+++ . ++.. .+ ....|+.+.||+
T Consensus 4 ~k~IAViGy-GsQG~a~AlNLrDSG~-----~V~Vglr~~s~s~~~A----~--~~Gf-------~v-~~~~eAv~~aDv 63 (165)
T PF07991_consen 4 GKTIAVIGY-GSQGHAHALNLRDSGV-----NVIVGLREGSASWEKA----K--ADGF-------EV-MSVAEAVKKADV 63 (165)
T ss_dssp TSEEEEES--SHHHHHHHHHHHHCC------EEEEEE-TTCHHHHHH----H--HTT--------EC-CEHHHHHHC-SE
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCC-----CEEEEecCCCcCHHHH----H--HCCC-------ee-ccHHHHHhhCCE
Confidence 469999996 9999999999999997 2544333211121222 2 2221 11 235799999999
Q ss_pred EEEe
Q 013466 176 ALLI 179 (442)
Q Consensus 176 VIi~ 179 (442)
|++.
T Consensus 64 V~~L 67 (165)
T PF07991_consen 64 VMLL 67 (165)
T ss_dssp EEE-
T ss_pred EEEe
Confidence 9987
No 449
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=89.43 E-value=1.2 Score=45.44 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=43.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh-c--ccCC-----Cc-ccEEEecCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE-D--SLFP-----LL-REVKIGINP 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~-~--~~~~-----~~-~~v~i~~~~ 166 (442)
|+||+|+|+ |.||..++..+...+-+. -+.+. |.+.+.....+.... + ...+ +. ..+.+..+.
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~e---Lvav~----d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~ 72 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDME---LVGVA----KTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTI 72 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcE---EEEEE----CCChHHHHHHHHhcCCCccccCccccccccCCceEEcCCh
Confidence 579999997 999999998887654321 12232 333332222222110 0 0000 10 134554445
Q ss_pred ccccCCCcEEEEeCC
Q 013466 167 YELFEDAEWALLIGA 181 (442)
Q Consensus 167 ~eal~dADiVIi~ag 181 (442)
.+.+.++|+||.+.+
T Consensus 73 ~el~~~vDVVIdaT~ 87 (341)
T PRK04207 73 EDLLEKADIVVDATP 87 (341)
T ss_pred hHhhccCCEEEECCC
Confidence 566689999999754
No 450
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=89.27 E-value=5.9 Score=37.39 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+.+.|+||+|+||.+++..|+..|.
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~ 28 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF 28 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC
Confidence 4689999999999999999999874
No 451
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=89.26 E-value=0.96 Score=45.99 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=39.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
-++++||| .|.||..++..+..-|. +|.. + ++... .+ ...++ ..+. .+..+.++.||+
T Consensus 146 gktvGIiG-~GrIG~avA~r~~~Fgm-----~v~y--~--~~~~~-~~-~~~~~---------~~~y-~~l~ell~~sDi 203 (324)
T COG1052 146 GKTLGIIG-LGRIGQAVARRLKGFGM-----KVLY--Y--DRSPN-PE-AEKEL---------GARY-VDLDELLAESDI 203 (324)
T ss_pred CCEEEEEC-CCHHHHHHHHHHhcCCC-----EEEE--E--CCCCC-hH-HHhhc---------Ccee-ccHHHHHHhCCE
Confidence 36999999 69999999999883222 2433 3 32221 11 11111 1122 237899999999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
|++..
T Consensus 204 i~l~~ 208 (324)
T COG1052 204 ISLHC 208 (324)
T ss_pred EEEeC
Confidence 99874
No 452
>PLN02858 fructose-bisphosphate aldolase
Probab=89.14 E-value=1.5 Score=52.90 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
.++||++|| .|.+|..++..|+..|. ++..+ |++.++++.. .+.. .....+..+.+++||
T Consensus 323 ~~~~IGfIG-lG~MG~~mA~~L~~~G~-----~V~v~----dr~~~~~~~l----~~~G------a~~~~s~~e~~~~aD 382 (1378)
T PLN02858 323 PVKRIGFIG-LGAMGFGMASHLLKSNF-----SVCGY----DVYKPTLVRF----ENAG------GLAGNSPAEVAKDVD 382 (1378)
T ss_pred CCCeEEEEC-chHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHH----HHcC------CeecCCHHHHHhcCC
Confidence 357999999 69999999999998874 24443 4454554432 2111 122344567889999
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+||++..
T Consensus 383 vVi~~V~ 389 (1378)
T PLN02858 383 VLVIMVA 389 (1378)
T ss_pred EEEEecC
Confidence 9999754
No 453
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=89.01 E-value=1.9 Score=40.84 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=40.4
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC----cccccCCC
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN----PYELFEDA 173 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~----~~eal~dA 173 (442)
|+|+||+|++|..++..|...+. +|..... +.+.+. +..|.+. + ..+. ...+ ..++|+|+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-----~V~~l~R--~~~~~~----~~~l~~~--g--~~vv~~d~~~~~~l~~al~g~ 65 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-----SVRALVR--DPSSDR----AQQLQAL--G--AEVVEADYDDPESLVAALKGV 65 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-----CEEEEES--SSHHHH----HHHHHHT--T--TEEEES-TT-HHHHHHHHTTC
T ss_pred CEEECCccHHHHHHHHHHHhCCC-----CcEEEEe--ccchhh----hhhhhcc--c--ceEeecccCCHHHHHHHHcCC
Confidence 78999999999999999999553 3544222 211122 2223322 1 1111 1111 25679999
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|.|+++-+
T Consensus 66 d~v~~~~~ 73 (233)
T PF05368_consen 66 DAVFSVTP 73 (233)
T ss_dssp SEEEEESS
T ss_pred ceEEeecC
Confidence 99998755
No 454
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=88.86 E-value=6.2 Score=36.95 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+.|+||+|++|..++..|+..|.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~ 25 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGY 25 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC
Confidence 578999999999999999998774
No 455
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=88.84 E-value=3.8 Score=40.32 Aligned_cols=88 Identities=22% Similarity=0.217 Sum_probs=53.6
Q ss_pred CCEEEEEcCCCc--------------------hHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHH-HHHHhcccC
Q 013466 96 MVNIAVSGAAGM--------------------IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV-AMELEDSLF 154 (442)
Q Consensus 96 ~~KI~IIGA~G~--------------------VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~-a~DL~~~~~ 154 (442)
++||+|-|| |+ =|+.+|...+..|. .++|- |.|.+-.+-. -..++|+
T Consensus 1 ~mkv~vyga-gnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGH-----DVVLa----ePn~d~~dd~~w~~vedA-- 68 (340)
T COG4007 1 MMKVAVYGA-GNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGH-----DVVLA----EPNRDIMDDEHWKRVEDA-- 68 (340)
T ss_pred CceEEEEcC-CccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCC-----cEEee----cCCccccCHHHHHHHHhc--
Confidence 478888885 65 26667777777663 36663 4443332211 1112332
Q ss_pred CCcccEEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHh
Q 013466 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA 210 (442)
Q Consensus 155 ~~~~~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~ 210 (442)
.+.+++|+.++.+.+.+.|+.--. | +.+..|.++|...+.+
T Consensus 69 ----GV~vv~dD~eaa~~~Ei~VLFTPF----G-------k~T~~Iarei~~hvpE 109 (340)
T COG4007 69 ----GVEVVSDDAEAAEHGEIHVLFTPF----G-------KATFGIAREILEHVPE 109 (340)
T ss_pred ----CcEEecCchhhhhcceEEEEeccc----c-------hhhHHHHHHHHhhCcC
Confidence 478889999999999998875221 1 2345777777765444
No 456
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=88.81 E-value=0.91 Score=48.39 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=54.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
-.+|+|+|. |.||..++..|...|. .|.++ +++..+.. .+.. +. +.. ....+.++.||+
T Consensus 254 GKtVgVIG~-G~IGr~vA~rL~a~Ga-----~ViV~----e~dp~~a~-~A~~--~G-------~~~-~~leell~~ADI 312 (476)
T PTZ00075 254 GKTVVVCGY-GDVGKGCAQALRGFGA-----RVVVT----EIDPICAL-QAAM--EG-------YQV-VTLEDVVETADI 312 (476)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----EEEEE----eCCchhHH-HHHh--cC-------cee-ccHHHHHhcCCE
Confidence 469999995 9999999999987664 24443 22222221 1111 11 111 134578899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
|+.+.|. ..++. ...+... +|++++++++-.
T Consensus 313 VI~atGt---------------~~iI~--~e~~~~M-KpGAiLINvGr~ 343 (476)
T PTZ00075 313 FVTATGN---------------KDIIT--LEHMRRM-KNNAIVGNIGHF 343 (476)
T ss_pred EEECCCc---------------ccccC--HHHHhcc-CCCcEEEEcCCC
Confidence 9997552 12222 1223333 588999999865
No 457
>PRK06484 short chain dehydrogenase; Validated
Probab=88.69 E-value=1.2 Score=47.67 Aligned_cols=118 Identities=15% Similarity=0.119 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC---------c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---------P 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~---------~ 166 (442)
.+++.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.... ......++.. .
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~ 337 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD-----RLLII----DRDAEGAKKLAEALGDEH--LSVQADITDEAAVESAFAQI 337 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhCCce--eEEEccCCCHHHHHHHHHHH
Confidence 46899999999999999999999884 25442 455556554444332110 0001111100 0
Q ss_pred ccccCCCcEEEEeCCcCC--CCC--CcH---HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 YELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~--kpg--~~r---~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+..-|++|..+|... .+- .+. ...+..|..-...+.+.+..+-...+.|++++.-
T Consensus 338 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~ 402 (520)
T PRK06484 338 QARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSI 402 (520)
T ss_pred HHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECch
Confidence 122345799999888642 221 121 2345555443333333332221235677887754
No 458
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=88.69 E-value=1.7 Score=43.28 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=41.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc----ccccC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELFE 171 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~----~eal~ 171 (442)
+.||+.|| +|..-.+........+. + ..++-+|+| ++.. ..+..+-.....+..++++.+++ ..+++
T Consensus 121 p~rVaFIG-SGPLPlT~i~la~~~~~-~----~~v~~iD~d--~~A~-~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~ 191 (276)
T PF03059_consen 121 PSRVAFIG-SGPLPLTSIVLAKQHGP-G----ARVHNIDID--PEAN-ELARRLVASDLGLSKRMSFITADVLDVTYDLK 191 (276)
T ss_dssp --EEEEE----SS-HHHHHHH--HTT-------EEEEEESS--HHHH-HHHHHHHH---HH-SSEEEEES-GGGG-GG--
T ss_pred cceEEEEc-CCCcchHHHHHHHHhCC-C----CeEEEEeCC--HHHH-HHHHHHHhhcccccCCeEEEecchhccccccc
Confidence 45999999 59988776665544332 1 334444444 3322 24433332111223455654433 34678
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEE
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV 220 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~viv 220 (442)
+.|+|++++-. ||+.. .-.+|+..+++ +..|++.+++
T Consensus 192 ~~DvV~lAalV----g~~~e----~K~~Il~~l~~----~m~~ga~l~~ 228 (276)
T PF03059_consen 192 EYDVVFLAALV----GMDAE----PKEEILEHLAK----HMAPGARLVV 228 (276)
T ss_dssp --SEEEE-TT-----S--------SHHHHHHHHHH----HS-TTSEEEE
T ss_pred cCCEEEEhhhc----ccccc----hHHHHHHHHHh----hCCCCcEEEE
Confidence 99999998643 22211 11345555554 4446666544
No 459
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.67 E-value=2.1 Score=45.42 Aligned_cols=118 Identities=17% Similarity=0.099 Sum_probs=63.6
Q ss_pred hhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccc
Q 013466 90 TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL 169 (442)
Q Consensus 90 ~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~ea 169 (442)
.+++....||.|+| .|..|.+++..|...|. .+.+.+ .+.. +.......+|.... ..+.......+.
T Consensus 8 ~~~~~~~~~i~v~G-~G~sG~a~a~~L~~~G~-----~V~~~D--~~~~-~~~~~~~~~l~~~g----i~~~~~~~~~~~ 74 (458)
T PRK01710 8 FKKFIKNKKVAVVG-IGVSNIPLIKFLVKLGA-----KVTAFD--KKSE-EELGEVSNELKELG----VKLVLGENYLDK 74 (458)
T ss_pred HhhhhcCCeEEEEc-ccHHHHHHHHHHHHCCC-----EEEEEC--CCCC-ccchHHHHHHHhCC----CEEEeCCCChHH
Confidence 34555567999999 59999999999999885 255532 2211 11111112233211 122222223466
Q ss_pred cCCCcEEEEeCCcCC-CCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 170 FEDAEWALLIGAKPR-GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 170 l~dADiVIi~ag~~~-kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+.++|+||.+.|.+. .|- .....+.+++|+.++- .+.+.. +..+|-+|-..
T Consensus 75 ~~~~dlVV~Spgi~~~~p~--~~~a~~~~i~i~s~~e-~~~~~~--~~~vIaITGTn 126 (458)
T PRK01710 75 LDGFDVIFKTPSMRIDSPE--LVKAKEEGAYITSEME-EFIKYC--PAKVFGVTGSD 126 (458)
T ss_pred hccCCEEEECCCCCCCchH--HHHHHHcCCcEEechH-Hhhhhc--CCCEEEEECCC
Confidence 789999999877653 221 2222345677765543 222322 23455555444
No 460
>PRK14851 hypothetical protein; Provisional
Probab=88.67 E-value=1.3 Score=49.43 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=26.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEec
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (442)
..||+|+|+ |++|+.++..|+..|+ ++ +.|.|.
T Consensus 43 ~~~VlIvG~-GGlGs~va~~Lar~GV-G~---l~LvD~ 75 (679)
T PRK14851 43 EAKVAIPGM-GGVGGVHLITMVRTGI-GR---FHIADF 75 (679)
T ss_pred cCeEEEECc-CHHHHHHHHHHHHhCC-Ce---EEEEcC
Confidence 469999995 9999999999999997 33 555443
No 461
>PRK07877 hypothetical protein; Provisional
Probab=88.60 E-value=0.95 Score=50.83 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=27.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEec
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (442)
..||+|+|+ | +|+.++..|+..|++++ |.|.|.
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~---l~lvD~ 139 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGE---LRLADF 139 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCe---EEEEcC
Confidence 369999997 8 99999999999998765 555443
No 462
>PRK06114 short chain dehydrogenase; Provisional
Probab=88.52 E-value=1.8 Score=41.37 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..++.|+||+|+||.+++..|+..|.
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~ 33 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGA 33 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35789999999999999999999874
No 463
>PRK06523 short chain dehydrogenase; Provisional
Probab=88.41 E-value=1.6 Score=41.73 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|+||..++..|+..|.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~ 34 (260)
T PRK06523 10 KRALVTGGTKGIGAATVARLLEAGA 34 (260)
T ss_pred CEEEEECCCCchhHHHHHHHHHCCC
Confidence 5899999999999999999998774
No 464
>PRK07831 short chain dehydrogenase; Provisional
Probab=88.38 E-value=7 Score=37.42 Aligned_cols=46 Identities=20% Similarity=0.135 Sum_probs=32.1
Q ss_pred CCEEEEEcCCC-chHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAG-MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G-~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
..++.|+||+| +||..++..|+..|. .|.+. +++.++++....++.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~-----~V~~~----~~~~~~~~~~~~~~~ 63 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA-----RVVIS----DIHERRLGETADELA 63 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 45899999887 799999999998874 24442 445555555544443
No 465
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=88.36 E-value=3.2 Score=42.46 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=20.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAG 119 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~ 119 (442)
++++||+|+|+ |.||...+..+...
T Consensus 3 ~~~lrVaI~G~-GrIGr~~~r~~~~~ 27 (338)
T PLN02358 3 DKKIRIGINGF-GRIGRLVARVVLQR 27 (338)
T ss_pred CCceEEEEEee-cHHHHHHHHHHhhC
Confidence 34589999995 99999988887764
No 466
>PRK08177 short chain dehydrogenase; Provisional
Probab=88.31 E-value=0.94 Score=42.54 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
|.+|.|+||+|++|+.++..|+..|.
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~ 26 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGW 26 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCC
Confidence 35799999999999999999999874
No 467
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=88.30 E-value=2 Score=47.97 Aligned_cols=45 Identities=33% Similarity=0.373 Sum_probs=32.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
++|.|+||+|+||.+++..|++.|. .|.+. +++.+.++....++.
T Consensus 415 kvvLVTGasggIG~aiA~~La~~Ga-----~Vvi~----~r~~~~~~~~~~~l~ 459 (676)
T TIGR02632 415 RVAFVTGGAGGIGRETARRLAAEGA-----HVVLA----DLNLEAAEAVAAEIN 459 (676)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 5899999999999999999999874 25543 444455555544443
No 468
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=88.26 E-value=0.47 Score=46.38 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
||.|+||+|.||++++..|+..+.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~ 24 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV 24 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC
Confidence 589999999999999999998774
No 469
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.18 E-value=2.6 Score=40.30 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+++.|+||+|+||..++..|+..|.
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~ 32 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGA 32 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 36899999999999999999999874
No 470
>PRK13529 malate dehydrogenase; Provisional
Probab=88.06 E-value=0.55 Score=50.85 Aligned_cols=138 Identities=12% Similarity=0.069 Sum_probs=79.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHH----cCCCCCC--CceEEEeccccc--hhh--hHHHHHHHHhcccCCCcc--cEEEec
Q 013466 97 VNIAVSGAAGMIANHLLFKLAA----GEVLGPD--QPIALKLLGSER--SLQ--ALEGVAMELEDSLFPLLR--EVKIGI 164 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~----~~l~~~~--~~I~L~l~d~d~--~~~--~l~g~a~DL~~~~~~~~~--~v~i~~ 164 (442)
.||.|.|| |..|..++..|+. .|+-.++ +.|.+ +|.+- ..+ .+......+.+...+... .-....
T Consensus 296 ~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~--vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~ 372 (563)
T PRK13529 296 QRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFM--VDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVI 372 (563)
T ss_pred cEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEE--EcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCC
Confidence 69999996 9999999998886 4652111 23433 33321 111 122222222211101000 001124
Q ss_pred CcccccCCC--cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch---hHHHHHHHHHCCCC
Q 013466 165 NPYELFEDA--EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSI 239 (442)
Q Consensus 165 ~~~eal~dA--DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv---d~lt~~~~k~s~~~ 239 (442)
+..|+++++ |++|=+.+. +|. +-+++.+.|.+++ ++.+|.-.+||. +....-+++.+.+
T Consensus 373 ~L~e~v~~~kPtvLIG~S~~---~g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt~~aE~tpe~a~~~T~G- 436 (563)
T PRK13529 373 SLLEVVRNVKPTVLIGVSGQ---PGA-----------FTEEIVKEMAAHC-ERPIIFPLSNPTSRAEATPEDLIAWTDG- 436 (563)
T ss_pred CHHHHHhccCCCEEEEecCC---CCC-----------CCHHHHHHHHhcC-CCCEEEECCCcCCCcccCHHHHHHhhcC-
Confidence 568999999 988865553 231 2245666667765 788999999997 4566667776533
Q ss_pred CcceeeccchhhHHH
Q 013466 240 PAKNFHALTRLDENR 254 (442)
Q Consensus 240 p~kvig~gT~LDs~R 254 (442)
+.+|.+|+-.+...
T Consensus 437 -rai~AtGspf~pv~ 450 (563)
T PRK13529 437 -RALVATGSPFAPVE 450 (563)
T ss_pred -CEEEEECCCCCCee
Confidence 35788888766543
No 471
>PRK07856 short chain dehydrogenase; Provisional
Probab=88.03 E-value=1.2 Score=42.47 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+++.|+||+|+||.+++..|+..|.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~ 31 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGA 31 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998774
No 472
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=87.98 E-value=0.52 Score=50.95 Aligned_cols=136 Identities=14% Similarity=0.044 Sum_probs=80.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHH----cCCCCCC--CceEEEeccccc--hh---hhHHHHHHHHhcccCCCcccEEEecC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAA----GEVLGPD--QPIALKLLGSER--SL---QALEGVAMELEDSLFPLLREVKIGIN 165 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~----~~l~~~~--~~I~L~l~d~d~--~~---~~l~g~a~DL~~~~~~~~~~v~i~~~ 165 (442)
.||.+.|| |..|..++..|+. .|+-.++ +.+.+ +|..- .. +.+...-..+.+.... .......+
T Consensus 298 ~riv~~GA-GsAgiGia~ll~~~m~~~Gls~eeA~~~i~~--vD~~GLl~~~r~~~l~~~k~~fa~~~~~--~~~~~~~~ 372 (559)
T PTZ00317 298 QRIVFFGA-GSAAIGVANNIADLAAEYGVTREEALKSFYL--VDSKGLVTTTRGDKLAKHKVPFARTDIS--AEDSSLKT 372 (559)
T ss_pred cEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEE--EcCCCeEeCCCCccccHHHHHHhccccc--cccccCCC
Confidence 69999996 9999999988874 5642111 23433 43221 01 1122122222221100 00001246
Q ss_pred cccccCCC--cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch---hHHHHHHHHHCCCCC
Q 013466 166 PYELFEDA--EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSIP 240 (442)
Q Consensus 166 ~~eal~dA--DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv---d~lt~~~~k~s~~~p 240 (442)
..|+++++ |++|=+.+.| | -+-+++.+.|.+++ ++.+|.-.+||. +....-+++.+.+
T Consensus 373 L~e~v~~~KPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~-~rPIIFaLSNPt~~aE~tpeda~~~T~G-- 435 (559)
T PTZ00317 373 LEDVVRFVKPTALLGLSGVG---G-----------VFTEEVVKTMASNV-ERPIIFPLSNPTSKAECTAEDAYKWTNG-- 435 (559)
T ss_pred HHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcC-CCCEEEECCCCCCCCCcCHHHHHhhccC--
Confidence 78999999 9988665533 3 12245666677775 889999999997 6777777777633
Q ss_pred cceeeccchhhHHH
Q 013466 241 AKNFHALTRLDENR 254 (442)
Q Consensus 241 ~kvig~gT~LDs~R 254 (442)
+.+|.+|.-.+...
T Consensus 436 rai~AtGspf~pv~ 449 (559)
T PTZ00317 436 RAIVASGSPFPPVT 449 (559)
T ss_pred CEEEEECCCCCCcc
Confidence 35788888766654
No 473
>PLN03139 formate dehydrogenase; Provisional
Probab=87.97 E-value=1.6 Score=45.42 Aligned_cols=92 Identities=14% Similarity=0.174 Sum_probs=52.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
++|+||| .|.||..++..|..-|. .+.. + |+.....+ ...++ .+....+..+.+++||+|
T Consensus 200 ktVGIVG-~G~IG~~vA~~L~afG~-----~V~~--~--d~~~~~~~-~~~~~---------g~~~~~~l~ell~~sDvV 259 (386)
T PLN03139 200 KTVGTVG-AGRIGRLLLQRLKPFNC-----NLLY--H--DRLKMDPE-LEKET---------GAKFEEDLDAMLPKCDVV 259 (386)
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCC-----EEEE--E--CCCCcchh-hHhhc---------CceecCCHHHHHhhCCEE
Confidence 5999999 59999999999987553 2333 3 33221111 10000 112223567888999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++... .. ..+-.++- .+.+... ++++++|+++
T Consensus 260 ~l~lP-----lt------~~T~~li~--~~~l~~m-k~ga~lIN~a 291 (386)
T PLN03139 260 VINTP-----LT------EKTRGMFN--KERIAKM-KKGVLIVNNA 291 (386)
T ss_pred EEeCC-----CC------HHHHHHhC--HHHHhhC-CCCeEEEECC
Confidence 99732 11 11112221 1334443 5889999887
No 474
>PLN02858 fructose-bisphosphate aldolase
Probab=87.92 E-value=2.1 Score=51.58 Aligned_cols=65 Identities=15% Similarity=0.053 Sum_probs=45.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||++|| .|.+|..++..|+..|. ++.. + |++.++.+..+. . .........++.++||+
T Consensus 4 ~~~IGfIG-LG~MG~~mA~~L~~~G~-----~v~v--~--dr~~~~~~~l~~----~------Ga~~~~s~~e~a~~adv 63 (1378)
T PLN02858 4 AGVVGFVG-LDSLSFELASSLLRSGF-----KVQA--F--EISTPLMEKFCE----L------GGHRCDSPAEAAKDAAA 63 (1378)
T ss_pred CCeEEEEc-hhHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHHHH----c------CCeecCCHHHHHhcCCE
Confidence 46899999 69999999999998884 2444 2 555555554321 1 12333456788889999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
||++.
T Consensus 64 Vi~~l 68 (1378)
T PLN02858 64 LVVVL 68 (1378)
T ss_pred EEEEc
Confidence 99864
No 475
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.88 E-value=3.4 Score=39.85 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=22.2
Q ss_pred CEEEEEcC--CCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGA--AGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA--~G~VG~~la~~L~~~~l 121 (442)
..+.|+|| +++||..++..|+..|.
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~ 34 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGA 34 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCC
Confidence 47899998 78999999999998774
No 476
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=87.83 E-value=1.8 Score=43.14 Aligned_cols=74 Identities=16% Similarity=0.132 Sum_probs=44.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh---hhHHHHHHHHhcccCCCcccEEE-ecC----cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFPLLREVKI-GIN----PY 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~---~~l~g~a~DL~~~~~~~~~~v~i-~~~----~~ 167 (442)
..++.|+|| |++|.++++.|+..|.- .|.+. +++. ++++..+.++.+.. +. ..+.. ... ..
T Consensus 126 ~k~vlI~GA-GGagrAia~~La~~G~~----~V~I~----~R~~~~~~~a~~l~~~l~~~~-~~-~~~~~~d~~~~~~~~ 194 (289)
T PRK12548 126 GKKLTVIGA-GGAATAIQVQCALDGAK----EITIF----NIKDDFYERAEQTAEKIKQEV-PE-CIVNVYDLNDTEKLK 194 (289)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCC----EEEEE----eCCchHHHHHHHHHHHHhhcC-CC-ceeEEechhhhhHHH
Confidence 357999996 99999999999988852 25553 4443 55666665554321 10 01111 111 12
Q ss_pred cccCCCcEEEEeC
Q 013466 168 ELFEDAEWALLIG 180 (442)
Q Consensus 168 eal~dADiVIi~a 180 (442)
+.++.+|+||.+-
T Consensus 195 ~~~~~~DilINaT 207 (289)
T PRK12548 195 AEIASSDILVNAT 207 (289)
T ss_pred hhhccCCEEEEeC
Confidence 3567789999863
No 477
>PRK07578 short chain dehydrogenase; Provisional
Probab=87.73 E-value=1.7 Score=39.89 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG 119 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~ 119 (442)
|+|.|+||+|+||..++..|++.
T Consensus 1 ~~vlItGas~giG~~la~~l~~~ 23 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR 23 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc
Confidence 47999999999999999999876
No 478
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=87.70 E-value=5 Score=40.07 Aligned_cols=115 Identities=16% Similarity=0.092 Sum_probs=62.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------- 166 (442)
..+.|+||+++||.+++..|+..|.. .|.+. .++.++++..+.++.... .++.. ..| +
T Consensus 4 k~vlITGas~GIG~aia~~L~~~G~~----~V~l~----~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~v~~~ 71 (314)
T TIGR01289 4 PTVIITGASSGLGLYAAKALAATGEW----HVIMA----CRDFLKAEQAAKSLGMPK----DSYTIMHLDLGSLDSVRQF 71 (314)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCC----EEEEE----eCCHHHHHHHHHHhcCCC----CeEEEEEcCCCCHHHHHHH
Confidence 37889999999999999999988721 24442 444555554544443111 11111 111 1
Q ss_pred ----ccccCCCcEEEEeCCcCCC----CCCcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 ----YELFEDAEWALLIGAKPRG----PGMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~k----pg~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+...|++|..+|.... +..+. ...+..|. -+++.+.+.+.+..+..+.|++++-
T Consensus 72 ~~~~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS 143 (314)
T TIGR01289 72 VQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGS 143 (314)
T ss_pred HHHHHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEec
Confidence 1123568999998885321 12222 22344453 3455556666653111356666653
No 479
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=87.68 E-value=1.2 Score=48.29 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=39.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.+|+||| .|.||..++..|..-|. .+.. + |+.... ..+.++ .+....+..+.+++||+|
T Consensus 139 ktvgIiG-~G~IG~~vA~~l~~fG~-----~V~~--~--d~~~~~--~~~~~~---------g~~~~~~l~ell~~aDvV 197 (525)
T TIGR01327 139 KTLGVIG-LGRIGSIVAKRAKAFGM-----KVLA--Y--DPYISP--ERAEQL---------GVELVDDLDELLARADFI 197 (525)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEEE--E--CCCCCh--hHHHhc---------CCEEcCCHHHHHhhCCEE
Confidence 5899999 69999999999987553 2333 3 322111 111111 112223467889999999
Q ss_pred EEeC
Q 013466 177 LLIG 180 (442)
Q Consensus 177 Ii~a 180 (442)
++..
T Consensus 198 ~l~l 201 (525)
T TIGR01327 198 TVHT 201 (525)
T ss_pred EEcc
Confidence 9873
No 480
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=87.67 E-value=0.98 Score=46.91 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
-.+|+||| .|+||+.++..|..-|.
T Consensus 116 gktvGIIG-~G~IG~~vA~~l~a~G~ 140 (378)
T PRK15438 116 DRTVGIVG-VGNVGRRLQARLEALGI 140 (378)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCC
Confidence 46999999 59999999999987664
No 481
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=87.58 E-value=2.7 Score=41.34 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (442)
|+||+|+||+|.+|..++..+....
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~ 25 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAE 25 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCC
Confidence 4799999977999999999988754
No 482
>PRK06398 aldose dehydrogenase; Validated
Probab=87.55 E-value=0.74 Score=44.42 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|+||.+++..|+..|.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~ 31 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEEGS 31 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998874
No 483
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=87.45 E-value=3.7 Score=41.47 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=44.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-HcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC---------CcccEEEecC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP---------LLREVKIGIN 165 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~-~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~---------~~~~v~i~~~ 165 (442)
|+||+-||| |-||....-.++ .++- |.+..+| .+..+..+.--|-.-..-| ...+.-+.++
T Consensus 1 ~~kicciga-gyvggptcavia~kcp~------i~vtvvd--~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIGA-GYVGGPTCAVIALKCPD------IEVTVVD--ISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTD 71 (481)
T ss_pred CceEEEecC-cccCCcchheeeecCCc------eEEEEEe--cCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecc
Confidence 579999996 999875433332 3332 4443333 3333332221111000001 1235556788
Q ss_pred cccccCCCcEEEEeCCcCCC
Q 013466 166 PYELFEDAEWALLIGAKPRG 185 (442)
Q Consensus 166 ~~eal~dADiVIi~ag~~~k 185 (442)
-+.+++.||+|++....|.|
T Consensus 72 iekai~eadlvfisvntptk 91 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTK 91 (481)
T ss_pred hHHHhhhcceEEEEecCCcc
Confidence 89999999999997766643
No 484
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=87.42 E-value=4 Score=38.13 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHcCC
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l 121 (442)
|.|+|++|.+|..++..|+..|.
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~ 23 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA 23 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC
Confidence 46899999999999999998874
No 485
>PRK14852 hypothetical protein; Provisional
Probab=87.40 E-value=1.6 Score=50.45 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=26.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEe
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l 132 (442)
..||+|+|+ |++|+.++..|+..|+ ++ |.|.|
T Consensus 332 ~srVlVvGl-GGlGs~ia~~LAraGV-G~---I~L~D 363 (989)
T PRK14852 332 RSRVAIAGL-GGVGGIHLMTLARTGI-GN---FNLAD 363 (989)
T ss_pred cCcEEEECC-cHHHHHHHHHHHHcCC-Ce---EEEEc
Confidence 469999995 9999999999999997 43 55544
No 486
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=87.36 E-value=1.5 Score=45.59 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
-.+|+||| .|+||..++..|..-|.
T Consensus 116 gktvGIIG-~G~IG~~va~~l~a~G~ 140 (381)
T PRK00257 116 ERTYGVVG-AGHVGGRLVRVLRGLGW 140 (381)
T ss_pred cCEEEEEC-CCHHHHHHHHHHHHCCC
Confidence 36899999 59999999999988664
No 487
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.32 E-value=1.8 Score=45.34 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=40.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-----Cccc-cc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-----NPYE-LF 170 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-----~~~e-al 170 (442)
|||.|+|+ |.+|..++..|...+. ++.+ +|++.+.++.....+. . .+..+. ...+ .+
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~-----~v~v----id~~~~~~~~~~~~~~-~------~~~~gd~~~~~~l~~~~~ 63 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN-----DVTV----IDTDEERLRRLQDRLD-V------RTVVGNGSSPDVLREAGA 63 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----cEEE----EECCHHHHHHHHhhcC-E------EEEEeCCCCHHHHHHcCC
Confidence 58999996 9999999999998764 2544 2555555543321110 0 111111 1122 38
Q ss_pred CCCcEEEEeCC
Q 013466 171 EDAEWALLIGA 181 (442)
Q Consensus 171 ~dADiVIi~ag 181 (442)
.++|.||++.+
T Consensus 64 ~~a~~vi~~~~ 74 (453)
T PRK09496 64 EDADLLIAVTD 74 (453)
T ss_pred CcCCEEEEecC
Confidence 89999998744
No 488
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=87.19 E-value=1.5 Score=46.97 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=43.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
.++++|+|+ |++|.+++..|...|. .+.+. +++.++++..+..+... .+...+..++.++|+
T Consensus 332 ~k~vlIiGa-GgiG~aia~~L~~~G~-----~V~i~----~R~~~~~~~la~~~~~~--------~~~~~~~~~l~~~Di 393 (477)
T PRK09310 332 NQHVAIVGA-GGAAKAIATTLARAGA-----ELLIF----NRTKAHAEALASRCQGK--------AFPLESLPELHRIDI 393 (477)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhccc--------eechhHhcccCCCCE
Confidence 468999995 9999999999998774 24442 55555655554332110 011122344789999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
||.+.
T Consensus 394 VInat 398 (477)
T PRK09310 394 IINCL 398 (477)
T ss_pred EEEcC
Confidence 99874
No 489
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.10 E-value=5.9 Score=39.38 Aligned_cols=26 Identities=23% Similarity=0.074 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+++.|+||+|+||..++..|+..|.
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~Ga 37 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARLGA 37 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999999874
No 490
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=86.99 E-value=4.7 Score=47.14 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=48.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREVK 161 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v~ 161 (442)
.+|.|+|+ |++|..++..|+..|+- .|.|+|.+. |+...+++..+..|.... +. .++.
T Consensus 25 s~VLIiG~-gGLG~EiaKnL~laGVg----~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLN-p~-V~V~ 97 (1008)
T TIGR01408 25 SNVLISGM-GGLGLEIAKNLVLAGVK----SVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELN-PY-VHVS 97 (1008)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCCC----eEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHC-CC-ceEE
Confidence 58999995 99999999999999973 366654321 111235555554454332 32 1333
Q ss_pred EecC--cccccCCCcEEEEe
Q 013466 162 IGIN--PYELFEDAEWALLI 179 (442)
Q Consensus 162 i~~~--~~eal~dADiVIi~ 179 (442)
...+ +.+-+++.|+||.+
T Consensus 98 ~~~~~l~~e~l~~fdvVV~t 117 (1008)
T TIGR01408 98 SSSVPFNEEFLDKFQCVVLT 117 (1008)
T ss_pred EecccCCHHHHcCCCEEEEC
Confidence 3322 35678999999987
No 491
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=86.99 E-value=6.9 Score=36.74 Aligned_cols=25 Identities=20% Similarity=0.119 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..|.|+||+|+||.+++..|+..|.
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~ 26 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGY 26 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 4689999999999999999998774
No 492
>PLN02306 hydroxypyruvate reductase
Probab=86.93 E-value=1.7 Score=45.35 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=18.3
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 013466 97 VNIAVSGAAGMIANHLLFKLA 117 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~ 117 (442)
.+|+||| .|+||+.++..|.
T Consensus 166 ktvGIiG-~G~IG~~vA~~l~ 185 (386)
T PLN02306 166 QTVGVIG-AGRIGSAYARMMV 185 (386)
T ss_pred CEEEEEC-CCHHHHHHHHHHH
Confidence 6999999 5999999999986
No 493
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=86.85 E-value=4.9 Score=36.38 Aligned_cols=67 Identities=16% Similarity=0.072 Sum_probs=40.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||.|||+ |.||...+..|...+. .|.+ ++.+. .+.. .++... .+....-..+++.++|+
T Consensus 13 ~~~vlVvGG-G~va~rka~~Ll~~ga-----~V~V--Isp~~----~~~l-~~l~~i------~~~~~~~~~~dl~~a~l 73 (157)
T PRK06719 13 NKVVVIIGG-GKIAYRKASGLKDTGA-----FVTV--VSPEI----CKEM-KELPYI------TWKQKTFSNDDIKDAHL 73 (157)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE--EcCcc----CHHH-HhccCc------EEEecccChhcCCCceE
Confidence 468999996 9999999999998774 2544 22222 1211 122110 12222223567999999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
||.+-+
T Consensus 74 ViaaT~ 79 (157)
T PRK06719 74 IYAATN 79 (157)
T ss_pred EEECCC
Confidence 988633
No 494
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.84 E-value=2.4 Score=44.60 Aligned_cols=112 Identities=17% Similarity=0.160 Sum_probs=59.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
.++|.|+|+ |.+|..++..|+..|. .|.+.+ .+. .+.+.....+|... . .++.......+...++|+
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G~-----~V~~~d--~~~-~~~~~~~~~~l~~~--~--~~~~~~~~~~~~~~~~d~ 71 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLGA-----KVILTD--EKE-EDQLKEALEELGEL--G--IELVLGEYPEEFLEGVDL 71 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----EEEEEe--CCc-hHHHHHHHHHHHhc--C--CEEEeCCcchhHhhcCCE
Confidence 468999996 8899999999999885 255532 221 12233223333211 1 112221112245678999
Q ss_pred EEEeCCcCC-CCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 176 ALLIGAKPR-GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 176 VIi~ag~~~-kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
||.++|.+. .|. ....-..+++++.......... + ..+|-+|--+
T Consensus 72 vv~~~g~~~~~~~--~~~a~~~~i~~~~~~~~~~~~~--~-~~vI~ITGS~ 117 (450)
T PRK14106 72 VVVSPGVPLDSPP--VVQAHKKGIEVIGEVELAYRFS--K-APIVAITGTN 117 (450)
T ss_pred EEECCCCCCCCHH--HHHHHHCCCcEEeHHHHHHhhc--C-CCEEEEeCCC
Confidence 999888532 221 1111234566666555433332 2 3455555444
No 495
>PRK06436 glycerate dehydrogenase; Provisional
Probab=86.84 E-value=0.93 Score=45.61 Aligned_cols=94 Identities=17% Similarity=0.271 Sum_probs=53.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.+|+||| .|.||..++..|..-|. .+.. + |++... +.. . ....+..+.++.||+|
T Consensus 123 ktvgIiG-~G~IG~~vA~~l~afG~-----~V~~--~--~r~~~~---------~~~-----~-~~~~~l~ell~~aDiv 177 (303)
T PRK06436 123 KSLGILG-YGGIGRRVALLAKAFGM-----NIYA--Y--TRSYVN---------DGI-----S-SIYMEPEDIMKKSDFV 177 (303)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCC-----EEEE--E--CCCCcc---------cCc-----c-cccCCHHHHHhhCCEE
Confidence 6999999 69999999987766453 2333 2 332110 000 0 0123467888999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC--CchhHHH
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG--NPCNTNA 229 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt--NPvd~lt 229 (442)
++..... +. +-.++. .+.+... .|++++|+++ .++|.-+
T Consensus 178 ~~~lp~t--~~---------T~~li~--~~~l~~m-k~ga~lIN~sRG~~vd~~a 218 (303)
T PRK06436 178 LISLPLT--DE---------TRGMIN--SKMLSLF-RKGLAIINVARADVVDKND 218 (303)
T ss_pred EECCCCC--ch---------hhcCcC--HHHHhcC-CCCeEEEECCCccccCHHH
Confidence 9973311 11 111111 2333443 5889999988 4555544
No 496
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.61 E-value=0.95 Score=46.81 Aligned_cols=72 Identities=8% Similarity=0.140 Sum_probs=44.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe----cCccccc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG----INPYELF 170 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~----~~~~eal 170 (442)
...||.|+|+ |.+|...+..+...|. .+.+. |++.++++.....+.. .+... ....+.+
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa-----~V~v~----d~~~~~~~~l~~~~g~-------~v~~~~~~~~~l~~~l 228 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGA-----TVTIL----DINIDRLRQLDAEFGG-------RIHTRYSNAYEIEDAV 228 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCC-----eEEEE----ECCHHHHHHHHHhcCc-------eeEeccCCHHHHHHHH
Confidence 3568999996 9999999999998774 25553 4444554433222211 11111 1124567
Q ss_pred CCCcEEEEeCCcC
Q 013466 171 EDAEWALLIGAKP 183 (442)
Q Consensus 171 ~dADiVIi~ag~~ 183 (442)
+++|+||.+.+.|
T Consensus 229 ~~aDvVI~a~~~~ 241 (370)
T TIGR00518 229 KRADLLIGAVLIP 241 (370)
T ss_pred ccCCEEEEccccC
Confidence 8999999987543
No 497
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=86.38 E-value=5 Score=40.86 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGE 120 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~ 120 (442)
||+|.|+ |.||..++..|...+
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~ 22 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESG 22 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcC
Confidence 6999996 999999999988754
No 498
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=86.33 E-value=1.2 Score=45.20 Aligned_cols=62 Identities=18% Similarity=0.071 Sum_probs=39.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
++|+||| .|+||+.++..|..-|. ++.. +|.-..++ .. . .+. +....+..+-++.||||
T Consensus 143 kTvGIiG-~G~IG~~va~~l~afgm-----~v~~--~d~~~~~~-~~---~--~~~-------~~~~~~Ld~lL~~sDiv 201 (324)
T COG0111 143 KTVGIIG-LGRIGRAVAKRLKAFGM-----KVIG--YDPYSPRE-RA---G--VDG-------VVGVDSLDELLAEADIL 201 (324)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----eEEE--ECCCCchh-hh---c--ccc-------ceecccHHHHHhhCCEE
Confidence 5999999 59999999999998664 2433 32211111 11 0 111 11123467889999999
Q ss_pred EEe
Q 013466 177 LLI 179 (442)
Q Consensus 177 Ii~ 179 (442)
++.
T Consensus 202 ~lh 204 (324)
T COG0111 202 TLH 204 (324)
T ss_pred EEc
Confidence 885
No 499
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=86.22 E-value=1.2 Score=46.54 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=27.0
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 92 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++++.+|.|+||+|.+|.-+...|...|.
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf 104 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRGF 104 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCCC
Confidence 456688999999999999999999999994
No 500
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.11 E-value=7.4 Score=40.83 Aligned_cols=25 Identities=28% Similarity=0.142 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++.|+||+|+||..++..|+..|.
T Consensus 211 ~~vlItGasggIG~~la~~l~~~Ga 235 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARDGA 235 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC
Confidence 5899999999999999999998774
Done!