RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013466
(442 letters)
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 520 bits (1340), Expect = 0.0
Identities = 316/377 (83%), Positives = 345/377 (91%), Gaps = 3/377 (0%)
Query: 66 DPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPD 125
+ + DC+GVFC TYDLKAE++TKSWKK+VNIAVSGAAGMI+NHLLFKLA+GEV G D
Sbjct: 2 EAPATRKDCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQD 61
Query: 126 QPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRG 185
QPIALKLLGSERS QALEGVAMELEDSL+PLLREV IGI+PYE+FED +WALLIGAKPRG
Sbjct: 62 QPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRG 121
Query: 186 PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245
PGMERA LLDINGQIFA+QGKALNAVAS+NVKV+VVGNPCNTNALICLKNAP IPAKNFH
Sbjct: 122 PGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFH 181
Query: 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK 305
ALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKE+IK K
Sbjct: 182 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTK 241
Query: 306 WLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTN 365
WLEE FT T+QK RGG LI+KWGRSSAASTAVSI DA+KSLVTPTPEGDWFS+GVYT
Sbjct: 242 WLEEEFTITVQK---RGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTT 298
Query: 366 GNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGE 425
GNPYGIAEDIVFSMPCRSKGDGDYEL DV DD+L +RI K+E ELLAEKKCVAHLTGE
Sbjct: 299 GNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLAEKKCVAHLTGE 358
Query: 426 GIAFCDLPEDTMLPGEM 442
G A+CD+PEDTMLPGE+
Sbjct: 359 GNAYCDVPEDTMLPGEV 375
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 435 bits (1120), Expect = e-152
Identities = 154/333 (46%), Positives = 218/333 (65%), Gaps = 8/333 (2%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELED 151
K + +AV+GAAG I LLF++A G++LG DQP+ L+LL +E++ +AL+GV ME++D
Sbjct: 3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDD 62
Query: 152 SLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
FPLL + +P F+DA+ ALL+GA+PRGPGMER LL+ N QIF QGKA++AV
Sbjct: 63 CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
ASRN+KV+VVGNP NTNA I +K+APS+PAKNF A+ RLD NRA Q+A K G +
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIE 182
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331
+ +WGNHS T D+ A+I+G VK++I D W + F T+ K RG +I G
Sbjct: 183 KLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGK---RGAAIIDARGV 239
Query: 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEL 391
SSAAS A + +D + V T G W + G+ ++G YGI E ++F P ++ +G+Y++
Sbjct: 240 SSAASAANAAIDHIHDWVLGTA-GKWTTMGIPSDG-SYGIPEGVIFGFPVTTE-NGEYKI 296
Query: 392 VKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTG 424
V+ + D + ++RI T ELL E+ V HL G
Sbjct: 297 VQGLSIDAFSQERINVTLNELLEEQNGVQHLLG 329
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 434 bits (1118), Expect = e-152
Identities = 163/329 (49%), Positives = 221/329 (67%), Gaps = 6/329 (1%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP + +NF A+TRLD NRAK QLA K G D++ M
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333
T+WGNHS+T PD +A ++G P E++ D +W E+ F T+ + RG +I+ G SS
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQ---RGAAIIQARGASS 237
Query: 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 393
AAS A + ++ ++ TPEGDW S V + G YGI E IV+S P +K DG Y +V+
Sbjct: 238 AASAANAAIEHIRDWALGTPEGDWVSMAVPSQG-EYGIPEGIVYSFPVTAK-DGAYRVVE 295
Query: 394 DVIFDDYLRKRIAKTEQELLAEKKCVAHL 422
+ +++ RKR+ T QELL E + V L
Sbjct: 296 GLEINEFARKRMEITAQELLDEMEQVKAL 324
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 424 bits (1093), Expect = e-148
Identities = 143/330 (43%), Positives = 201/330 (60%), Gaps = 8/330 (2%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 63
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L++V F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++V
Sbjct: 64 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV 123
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
KVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ IW
Sbjct: 124 KVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIW 183
Query: 277 GNHSTTQVPDFLNARINGLP----VKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRS 332
GNHS+TQ PD +A++ V E +KD WL+ F T+Q+ RG +IK S
Sbjct: 184 GNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQ---RGAAVIKARKLS 240
Query: 333 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELV 392
SA S A +I D ++ + TPEG++ S G+ ++GN YG+ +D+++S P D +++V
Sbjct: 241 SAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKTWKIV 299
Query: 393 KDVIFDDYLRKRIAKTEQELLAEKKCVAHL 422
+ + +D+ R+++ T +EL EK+
Sbjct: 300 EGLPINDFSREKMDLTAKELAEEKETAFEF 329
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 294 bits (754), Expect = 5e-97
Identities = 82/328 (25%), Positives = 138/328 (42%), Gaps = 14/328 (4%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
+ + GAAGMI +++ A L P+ L L + LEGVA E+ F
Sbjct: 7 TEEKLTIVGAAGMIGSNMAQTAAMMR-LTPN----LCLY--DPFAVGLEGVAEEIRHCGF 59
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
L + + E DA++ + G PR GM R LL N +I A+ GK + +
Sbjct: 60 EGLN-LTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPD 118
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
VI++ NP + L+ L + + L LD R + +LA G+ V+N
Sbjct: 119 CKHVIIIFNPADITGLVTLIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTR 177
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSA 334
+G H A++NG P+ ++I K E + E Q+V G +IK GRSS
Sbjct: 178 TYGGHGEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRSSF 237
Query: 335 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKD 394
S + ++ +++ + + +G Y N G E I+ +M DG +
Sbjct: 238 QSPSYVSIEMIRAAMGGEAF--RWPAGCYVNV--PGF-EHIMMAMETTITKDGVKHSDIN 292
Query: 395 VIFDDYLRKRIAKTEQELLAEKKCVAHL 422
+ ++ R + ++ L + V +
Sbjct: 293 QLGNEAERAALKESYSHLAKLRDEVIAM 320
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 79.1 bits (196), Expect = 1e-16
Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 24/250 (9%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
G A++L + + K+ G N Y+ E+++ ++ PR PGM R LL IN ++
Sbjct: 43 NGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVM 102
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAKCQL 259
G+ + N VI + NP + + K + +P N LD R + L
Sbjct: 103 QTVGEGIKHNCP-NAFVICITNPLDIMVNMLQKFS-GVP-DNKIVGMAGVLDSARFRTFL 159
Query: 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVR 319
A + V +V + G H T VP + + G+ +++++K+ K +E + + R
Sbjct: 160 ADELNVSVQQVQAYVM-GGHGDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTR 218
Query: 320 LRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGI 371
GG ++ SA A+ + + ++ K ++ YG+
Sbjct: 219 SGGGEIVALLKTGSAYYAPAAAGIQMAESFLKDKKMILP---------CAAKVKAGMYGL 269
Query: 372 AEDIVFSMPC 381
ED+ +P
Sbjct: 270 DEDLFVGVPT 279
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 76.8 bits (190), Expect = 1e-15
Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 32/253 (12%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L + + KI G N YE ++++ ++I G PR P M R+ LL +N
Sbjct: 52 QGKALDLNHCMALIGSPAKIFGENNYEYLQNSD--VVIITAGV-PRKPNMTRSDLLTVNA 108
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
+I + + N VI + NP + + + IP N LD R +
Sbjct: 109 KIVGSVAENV-GKYCPNAFVICITNPLDAMVYYFKEKS-GIP-ANKVCGMSGVLDSARFR 165
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
C L+ GV VS + + G H +P + I G+ + + ++ K E I+
Sbjct: 166 CNLSRALGVKPSDVSAIVV-GGHGDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIK 224
Query: 317 KVRLRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 368
K GG +++ SA A++AV++ A KS++ Y G
Sbjct: 225 KTAFGGGEIVELLKTGSAFYAPAASAVAMAQAYLKDSKSVLV---------CSTYLTGQ- 274
Query: 369 YGIAEDIVFSMPC 381
Y + ++ +P
Sbjct: 275 YNV-NNLFVGVPV 286
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 74.5 bits (184), Expect = 6e-15
Identities = 55/253 (21%), Positives = 106/253 (41%), Gaps = 32/253 (12%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G +++ +S + K G N Y E A+ ++I G PR PGM R LL IN
Sbjct: 45 QGKGLDIAESSPVDGFDAKFTGANDYAAIEGAD--VVIVTAGV-PRKPGMSRDDLLGINL 101
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
++ + G + A VI + NP + K + +P + LD R +
Sbjct: 102 KVMEQVGAGIKKYAP-EAFVICITNPLDAMVWALQKFS-GLP-AHKVVGMAGVLDSARFR 158
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
L+ + V + V+ + G H + VP + + G+P+ +++K ++ + IQ
Sbjct: 159 YFLSEEFNVSVEDVTVFVL-GGHGDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQ 217
Query: 317 KVRLRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 368
+ R G ++ SA A++A+ + ++ K ++ +G
Sbjct: 218 RTRDGGAEIVGLLKTGSAFYAPAASAIQMAESYLKDKKRVLP---------VAAQLSGQ- 267
Query: 369 YGIAEDIVFSMPC 381
YG+ +D+ +P
Sbjct: 268 YGV-KDMYVGVPT 279
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 72.1 bits (178), Expect = 3e-14
Identities = 53/253 (20%), Positives = 96/253 (37%), Gaps = 32/253 (12%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A+++ S+ K+ G + Y ++ ++I P P +R+ LL N
Sbjct: 42 QGKALDITHSMVMFGSTSKVIGTDDYADISGSD--VVIITASI-PGRPKDDRSELLFGNA 98
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
+I + + N VI + NP + K + +P N LD +R +
Sbjct: 99 RILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVS-GLP-HNKVCGMAGVLDSSRFR 155
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
+A GV VS I G H VP + + G+P+ IK +E E +
Sbjct: 156 TFIAQHFGVNASDVSANVI-GGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVC 214
Query: 317 KVRLRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 368
R+ + +A A+ AV + +A K++V + + +
Sbjct: 215 HTRIAWKEVADNLKTGTAYFAPAAAAVKMAEAYLKDKKAVVP---------CSAFCSNH- 264
Query: 369 YGIAEDIVFSMPC 381
YG+ + I +P
Sbjct: 265 YGV-KGIYMGVPT 276
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 71.8 bits (177), Expect = 4e-14
Identities = 62/273 (22%), Positives = 112/273 (41%), Gaps = 42/273 (15%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI-- 179
+A K L E L +G A+++ +S L + K+ G N Y +++ ++I
Sbjct: 19 LAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSD--IVIIT 76
Query: 180 -GAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS 238
G PR PGM R LL N I E + + N +IVV NP + + +
Sbjct: 77 AGL-PRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLDIMTHVAWVRS-G 133
Query: 239 IPAKN--FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLP 296
+P K LD R + +A++ GV ++ + G H VP + G+P
Sbjct: 134 LP-KERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL-GGHGDAMVPVVKYTTVAGIP 191
Query: 297 VKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSA----ASTAVSIVDAM----KSL 348
+ +++ E + +++ R G +++ + SA AS+ V +V+++ K +
Sbjct: 192 ISDLLP-----AETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVVEMVESIVLDRKRV 246
Query: 349 VTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 381
+ V G YGI + +P
Sbjct: 247 LP---------CAVGLEGQ-YGI-DKTFVGVPV 268
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 71.0 bits (175), Expect = 8e-14
Identities = 60/252 (23%), Positives = 109/252 (43%), Gaps = 35/252 (13%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L ++ +V++ G N Y +++ +++ GA PR PGM R L+ +N
Sbjct: 40 QGKALDLYEASPIEGFDVRVTGTNNYADTANSD--VIVVTSGA-PRKPGMSREDLIKVNA 96
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKC 257
I ++ N +I+V NP + + + + P + LD R +
Sbjct: 97 DITRACISQAAPLSP-NAVIIMVNNPLDAMTYLAAEVS-GFPKERVIGQAGVLDAARYRT 154
Query: 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
+A++AGV + V M + G H VP + I+G+PV E I + + +++
Sbjct: 155 FIAMEAGVSVEDVQAMLM-GGHGDEMVPLPRFSCISGIPVSEFIA-----PDRLAQIVER 208
Query: 318 VRLRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPY 369
R GG ++ SA A+ +V+A+ K ++ Y G Y
Sbjct: 209 TRKGGGEIVNLLKTGSAYYAPAAATAQMVEAVLKDKKRVMP---------VAAYLTGQ-Y 258
Query: 370 GIAEDIVFSMPC 381
G+ DI F +P
Sbjct: 259 GL-NDIYFGVPV 269
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 71.0 bits (175), Expect = 8e-14
Identities = 67/297 (22%), Positives = 121/297 (40%), Gaps = 40/297 (13%)
Query: 99 IAVSGAAGMI----ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
+ + GA+G + A L + +++ L+G E S+ LEG+ ++ D+L
Sbjct: 3 VTIIGASGRVGSATALLLAKEPFMKDLV---------LIGREHSINKLEGLREDIYDALA 53
Query: 155 PLLREVKI---GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
+ I + ++++ ++ PR GM R L N +I + K
Sbjct: 54 GTRSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAK--KIA 111
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
+ K+ V+ NP + L ++ + F T LD R K +A GV D+V
Sbjct: 112 EICDTKIFVITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVR 171
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331
I G H + VP I G+P+++ ++ E E I+ V+ +G +I+ G
Sbjct: 172 TRII-GEHGDSMVPLLSATSIGGIPIQKFE---RFKELPIDEIIEDVKTKGEQIIRLKG- 226
Query: 332 SSA---ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 381
S A+ +++V + K L+T Y +G GI D+ +P
Sbjct: 227 GSEFGPAAAILNVVRCIVNNEKRLLT---------LSAYVDGEFDGI-RDVCIGVPV 273
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 70.2 bits (173), Expect = 1e-13
Identities = 49/252 (19%), Positives = 101/252 (40%), Gaps = 35/252 (13%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A+++ ++ + I G + Y D++ +++ G R PGM R L+ N
Sbjct: 48 KGKALDMLEASPVQGFDANIIGTSDYADTADSD--VVVITAGI-ARKPGMSRDDLVATNS 104
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKC 257
+I + + + N ++V+ NP + K A P + LD R +
Sbjct: 105 KIMKSITRDIAKHSP-NAIIVVLTNPVDAMTYSVFKEA-GFPKERVIGQSGVLDTARFRT 162
Query: 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
+A + + ++ + G H VP + G+P++ +I +E +++
Sbjct: 163 FIAQELNLSVKDITGFVL-GGHGDDMVPLVRYSYAGGIPLETLIP-----KERLEAIVER 216
Query: 318 VRLRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPY 369
R GG ++ G SA A++ V + +A+ + ++ + Y G Y
Sbjct: 217 TRKGGGEIVGLLGNGSAYYAPAASLVEMTEAILKDQRRVLP---------AIAYLEGE-Y 266
Query: 370 GIAEDIVFSMPC 381
G D+ +P
Sbjct: 267 GY-SDLYLGVPV 277
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 69.1 bits (170), Expect = 3e-13
Identities = 58/271 (21%), Positives = 111/271 (40%), Gaps = 39/271 (14%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI-- 179
+A + + E + +G A+++ +S + ++ G N Y ED++ + I
Sbjct: 19 VARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSD--VCIIT 76
Query: 180 -GAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS 238
G PR PGM R LL N +I + + + +IVV NP + + + +
Sbjct: 77 AGL-PRSPGMSRDDLLAKNTEIVGGVTEQFVEGSP-DSTIIVVANPLDVMTYVAYEAS-G 133
Query: 239 IPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV 297
P + LD R + +A + V V + + G H T VP + G+PV
Sbjct: 134 FPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLM-GGHGDTMVPLPRYTTVGGIPV 192
Query: 298 KEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS---AASTAVSIVDAM----KSLVT 350
++I D + E +++ + GG ++ G S+ + A + +A+ K ++
Sbjct: 193 PQLIDDARI-----EEIVERTKGAGGEIVDLMGTSAWYAPGAAAAEMTEAILKDNKRILP 247
Query: 351 PTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 381
Y +G YG+ +D+ +P
Sbjct: 248 ---------CAAYCDGE-YGL-DDLFIGVPV 267
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 68.7 bits (169), Expect = 4e-13
Identities = 42/212 (19%), Positives = 84/212 (39%), Gaps = 19/212 (8%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+ A ++ + P+ ++ + DA+ ++I GA + PG R LL+ N
Sbjct: 38 AQAEAEDIAHAA-PVSHGTRVWHGGHSELADAQ--VVILTAGA-NQKPGESRLDLLEKNA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
IF E + + + ++V NP + + + AP + T LD R +
Sbjct: 94 DIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQLAP----GQPVIGSGTVLDSARFR 148
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--WLEEGFTET 314
+A AGV + G H ++V + +A + G+PV + ++ W E+ +
Sbjct: 149 HLMAQHAGVDGTHAHGYVL-GEHGDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKI 207
Query: 315 IQKVRLRGGLLIKKWGRSS--AASTAVSIVDA 344
+ R +I+ + + I +A
Sbjct: 208 DEGTRNAAASIIEGKRATYYGIGAALARITEA 239
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 68.7 bits (169), Expect = 4e-13
Identities = 56/250 (22%), Positives = 102/250 (40%), Gaps = 32/250 (12%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L + L +++I G N YE ++ +++ G R PGM R LL+ N
Sbjct: 37 QGEALDLAHAAAELGVDIRISGSNSYEDMRGSD--IVLVTAGI-GRKPGMTREQLLEANA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
A+ + + A A + V++ NP + + K + LD R
Sbjct: 94 NTMADLAEKIKAYAK-DAIVVITTNPVDAMTYVMYKKTGFPRERVIGFSGILDSARMAYY 152
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKV 318
++ K GV + V+ + + G H P + + G+P++ ++ +E E + +
Sbjct: 153 ISQKLGVSFKSVNAIVL-GMHGQKMFPVPRLSSVGGVPLEHLMS-----KEEIEEVVSET 206
Query: 319 RLRGGLLIKKWGRSSA---ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGI 371
G + + G SS A+ V V+A+ K + +Y G YG
Sbjct: 207 VNAGAKITELRGYSSNYGPAAGLVLTVEAIKRDSKRIYP---------YSLYLQGE-YGY 256
Query: 372 AEDIVFSMPC 381
DIV +P
Sbjct: 257 -NDIVAEVPA 265
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 68.7 bits (169), Expect = 5e-13
Identities = 60/259 (23%), Positives = 101/259 (38%), Gaps = 38/259 (14%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI----GAKPRGPGMERAG----- 192
EG A++L + V + YE A + G + PG +
Sbjct: 47 EGKALDLSHVTSVVDTNVSVRAEYSYE--AALTGADCVIVTAGL-TKVPGKPDSEWSRND 103
Query: 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRL 250
LL N +I E G+ + +IVV NP + + + + +P N L
Sbjct: 104 LLPFNSKIIREIGQNIKK-YCPKTFIIVVTNPLDCMVKVMCEAS-GVP-TNMICGMACML 160
Query: 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEG 310
D R + +A V V I G H VP +NG P+++ IKD E+
Sbjct: 161 DSGRFRRYVADALSVSPRDVQATVI-GTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQ 219
Query: 311 FTETIQKVRLRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGV 362
E + ++ GG +++ G+ SA A++AV++ + K ++ V
Sbjct: 220 LEEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRVIP---------CSV 270
Query: 363 YTNGNPYGIAEDIVFSMPC 381
Y NG YG+ +D+ +P
Sbjct: 271 YCNGE-YGL-KDMFIGLPA 287
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 67.9 bits (167), Expect = 9e-13
Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 32/254 (12%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
L+G M+L+ L + Y + +++ L+I GA + G R L+ N
Sbjct: 57 LKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSK--LVIITAGA-RQQEGESRLNLVQRNV 113
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKN--FHALTRLDENR 254
IF + S K+++V NP + + K + P KN + LD R
Sbjct: 114 NIFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKISGFP----KNRVIGSGCNLDSAR 168
Query: 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD--HKWLEEGFT 312
+ + + GV + G H + VP + + G+ +K + +E +
Sbjct: 169 FRYLMGERLGVHPLSCHGWVL-GEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWK 227
Query: 313 ETIQKVRLRGGLLIKKWGRSSAA--STAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGN 367
+ ++V +IK G +S A + + +++ V P G
Sbjct: 228 DVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPI--------STMIKGL 279
Query: 368 PYGIAEDIVFSMPC 381
YGI ED+ S+PC
Sbjct: 280 -YGIKEDVFLSVPC 292
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 67.5 bits (166), Expect = 1e-12
Identities = 52/250 (20%), Positives = 91/250 (36%), Gaps = 27/250 (10%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+ G M+L+ + V++ Y DA L++ GA + PG R L+ N
Sbjct: 44 VRGDVMDLKHATPYSPTTVRVKAGEYSDCHDA--DLVVICAGA-AQKPGETRLDLVSKNL 100
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
+IF + A + +V NP + A K + + + T LD R +
Sbjct: 101 KIFKSIVGEVMAS-KFDGIFLVATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLL 159
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKV 318
L+ V V I G H T++P + +A I G P+K +++ + + +
Sbjct: 160 LSEAFDVAPRSVDAQII-GEHGDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQT 218
Query: 319 RLRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGI 371
R +I+ G + A I +A+ + V G Y
Sbjct: 219 RDAAYDIIQAKG--ATYYGVAMGLARITEAIFRNEDAVLTV--------SALLEGE-YEE 267
Query: 372 AEDIVFSMPC 381
ED+ +P
Sbjct: 268 -EDVYIGVPA 276
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 67.1 bits (165), Expect = 1e-12
Identities = 54/270 (20%), Positives = 99/270 (36%), Gaps = 33/270 (12%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI--- 179
+AL + E L + + A ++ + P V + Y E A ++
Sbjct: 19 LALLGVAREVVLVDLDRKLAQAHAEDILHAT-PFAHPVWVWAGSYGDLEGAR--AVVLAA 75
Query: 180 GAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSI 239
G + PG R LLD N Q+FA+ + + ++V NP + + +
Sbjct: 76 GV-AQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVDVMTQVAYALSGLP 133
Query: 240 PAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKE 299
P + + T LD R + LA V V + G H ++V + +A++ G+P+ E
Sbjct: 134 PGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSEVLVWSSAQVGGVPLLE 192
Query: 300 IIKD--HKWLEEGFTETIQKVRLRGGLLIKKWGRSS---AASTAVSIVDAM---KSLVTP 351
+ E + VR +I+ G + A A +V A+ + V
Sbjct: 193 FAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLA-RLVRAILTDEKGVYT 251
Query: 352 TPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 381
+T G+ ++ S+P
Sbjct: 252 V--------SAFTPE-VAGV-LEVSLSLPR 271
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 66.8 bits (164), Expect = 2e-12
Identities = 61/251 (24%), Positives = 101/251 (40%), Gaps = 29/251 (11%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L ++L P KI Y +DA+ L++ GA P+ PG R L++ N
Sbjct: 47 TKGDAIDLSNAL-PFTSPKKIYSAEYSDAKDAD--LVVITAGA-PQKPGETRLDLVNKNL 102
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
+I + N +V NP + K + + + T LD R +
Sbjct: 103 KILKSIVDPIVDS-GFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQS 161
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL-EEGFTETIQK 317
+A V V + G H T+ P + +A I G+ + E +K H + E+ + +
Sbjct: 162 IAEMVNVDARSVHAYIM-GEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFED 220
Query: 318 VRLRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYG 370
VR +IK G + A+ I A+ ++ V P VY +G YG
Sbjct: 221 VRDAAYEIIKLKG--ATFYGIATALARISKAILNDENAVLPL--------SVYMDGQ-YG 269
Query: 371 IAEDIVFSMPC 381
+ DI P
Sbjct: 270 L-NDIYIGTPA 279
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 66.4 bits (163), Expect = 3e-12
Identities = 59/265 (22%), Positives = 104/265 (39%), Gaps = 32/265 (12%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++LED+ KI Y +DA+ L++ GA P+ PG R L++ N
Sbjct: 43 TKGDALDLEDAQ-AFTAPKKIYSGEYSDCKDAD--LVVITAGA-PQKPGESRLDLVNKNL 98
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
I + K + + +V NP + K + + + T LD +R +
Sbjct: 99 NILSSIVKPVVDS-GFDGIFLVAANPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVA 157
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKV 318
L + V V + G H ++ + A I PV+++ K+ ++ + V
Sbjct: 158 LGKQFNVDPRSVDAYIM-GEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGV 216
Query: 319 RLRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGI 371
R + +I G + + + I A+ ++ V P G Y +G YG+
Sbjct: 217 RNKAYDIINLKG--ATFYGIGTALMRISKAILRDENAVLPV--------GAYMDG-QYGL 265
Query: 372 AEDIVFSMPCRSKGDGDYELVKDVI 396
DI P G G +K +I
Sbjct: 266 -NDIYIGTPAIIGGTG----LKQII 285
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 66.4 bits (163), Expect = 3e-12
Identities = 61/253 (24%), Positives = 106/253 (41%), Gaps = 33/253 (13%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
EG A++L P R I Y + ++ ++I G P+ PG R LL N
Sbjct: 38 AEGDALDLIHGT-PFTRRANIYAGDYADLKGSD--VVIVAAGV-PQKPGETRLQLLGRNA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRAK 256
++ E + ++ + + VIVV NP + LK + P K F + T LD R +
Sbjct: 94 RVMKEIARNVSKY-APDSIVIVVTNPVDVLTYFFLKESGMD--PRKVFGSGTVLDTARLR 150
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH-KWLEEGFTETI 315
+A G V I G H ++VP + A I G+P++ + + K +
Sbjct: 151 TLIAQHCGFSPRSVHVYVI-GEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFA 209
Query: 316 QKVRLRGGLLIKKWGRSS---AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 368
+K + +I++ G + A + A IV+++ K ++T VY
Sbjct: 210 EKTKRAAYEIIERKGATHYAIALAVA-DIVESIFFDEKRVLT---------LSVYLEDY- 258
Query: 369 YGIAEDIVFSMPC 381
G+ +D+ S+P
Sbjct: 259 LGV-KDLCISVPV 270
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 66.0 bits (162), Expect = 3e-12
Identities = 50/258 (19%), Positives = 90/258 (34%), Gaps = 39/258 (15%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGM-----ERAGL 193
G A++ + K+ G N Y+ A+ ++I G + PG R L
Sbjct: 42 HGKALDTSHTNVMAYSNCKVSGSNTYDDLAGAD--VVIVTAGF-TKAPGKSDKEWNRDDL 98
Query: 194 LDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLD 251
L +N +I E G + N +IVV NP + + +++ +P KN LD
Sbjct: 99 LPLNNKIMIEIGGHIKK-NCPNAFIIVVTNPVDVMVQLLHQHS-GVP-KNKIIGLGGVLD 155
Query: 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGF 311
+R K ++ K V V+ + G H V + G+P++E I + +
Sbjct: 156 TSRLKYYISQKLNVCPRDVNAHIV-GAHGNKMVLLKRYITVGGIPLQEFINNKLISDAEL 214
Query: 312 TETIQKVRLRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVY 363
+ ++ S A+ + + ++ K ++
Sbjct: 215 EAIFDRTVNTALEIVNLHA--SPYVAPAAAIIEMAESYLKDLKKVLI---------CSTL 263
Query: 364 TNGNPYGIAEDIVFSMPC 381
G YG DI P
Sbjct: 264 LEGQ-YGH-SDIFGGTPV 279
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 64.8 bits (159), Expect = 9e-12
Identities = 55/253 (21%), Positives = 100/253 (39%), Gaps = 32/253 (12%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G M+L + VK YE +DA+ ++ GA + PG R L++ N
Sbjct: 43 AMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDAD--IVCICAGA-NQKPGETRLELVEKNL 99
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRAK 256
+IF + A + +V NP + K + P + + T LD R +
Sbjct: 100 KIFKGIVSEVMAS-GFDGIFLVATNPVDILTYATWKFSGLP--KERVIGSGTTLDSARFR 156
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL-EEGFTETI 315
L+ G V I G H T++P + +A + G+PV E+++ + +E + +
Sbjct: 157 FMLSEYFGAAPQNVCAHII-GEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIV 215
Query: 316 QKVRLRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNP 368
V+ +I+K G + A + I A+ ++ + Y +G
Sbjct: 216 DDVKNAAYHIIEKKG--ATYYGVAMSLARITKAILHNENSILTV--------STYLDGQ- 264
Query: 369 YGIAEDIVFSMPC 381
YG +D+ +P
Sbjct: 265 YGA-DDVYIGVPA 276
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 63.7 bits (156), Expect = 2e-11
Identities = 52/251 (20%), Positives = 91/251 (36%), Gaps = 28/251 (11%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G AM+ + V I Y+ DA L++ GA + PG R L+D N
Sbjct: 44 AIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDA--DLVVICAGA-NQKPGETRLDLVDKNI 100
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
IF +++ A +V NP + K + + + T LD R +
Sbjct: 101 AIFRSIVESVMAS-GFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFL 159
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL-EEGFTETIQK 317
L V V I G H T++P + A I +P++++++ ++
Sbjct: 160 LGEYFSVAPQNVHAYII-GEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVN 218
Query: 318 VRLRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYG 370
VR +I+K G + A + A+ ++ + Y +G YG
Sbjct: 219 VRDAAYQIIEKKG--ATYYGIAMGLARVTRAILHNENAILTV--------SAYLDGL-YG 267
Query: 371 IAEDIVFSMPC 381
D+ +P
Sbjct: 268 E-RDVYIGVPA 277
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 63.3 bits (155), Expect = 3e-11
Identities = 65/252 (25%), Positives = 104/252 (41%), Gaps = 30/252 (11%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G AM++ L P + ++ + Y +D + +++ GA R PG R L N
Sbjct: 45 AIGEAMDINHGL-PFMGQMSLYAGDYSDVKDCD--VIVVTAGA-NRKPGETRLDLAKKNV 100
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
I E + + + ++VV NP + + K + K + T LD R +
Sbjct: 101 MIAKEVTQNIMKY-YNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYL 159
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--WLEEGFTETIQ 316
L+ K GV V I G H +Q+P + I G + E I D K + EE + +
Sbjct: 160 LSEKLGVDVKNVHGYII-GEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAE 218
Query: 317 KVRLRGGLLIKKWGRSS---AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPY 369
V+ G +IK G + A S +IV+ + ++ T G NG Y
Sbjct: 219 DVKTAGATIIKNKGATYYGIAVSIN-TIVETLLKNQNTIRT---------VGTVINGM-Y 267
Query: 370 GIAEDIVFSMPC 381
GI ED+ S+P
Sbjct: 268 GI-EDVAISLPS 278
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 63.1 bits (154), Expect = 4e-11
Identities = 54/314 (17%), Positives = 95/314 (30%), Gaps = 43/314 (13%)
Query: 80 LTYDLKAEEETKSWKKMVNIAV--SGAAGM-IANHLLFKLAAGEVLGPDQPIALKLLGSE 136
L L +E +S+ K I V A GM A +L K A E +AL + +
Sbjct: 8 LIGHLATSQEPRSYNK---ITVVGCDAVGMADAISVLMKDLADE-------VALVDVMED 57
Query: 137 RSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLD 195
+ L+G M+LE L KI Y + ++ ++ + G R L+
Sbjct: 58 K----LKGEMMDLEHGS-LFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQ 112
Query: 196 INGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRA 255
N IF + S + + K + + + LD R
Sbjct: 113 RNVNIFKFIIPNIVKH-SPDCLKELHPELGTDKNKQDWKLSGLPMHRIIGSGCNLDSARF 171
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315
+ + + GV V I G H + + L + ++ +
Sbjct: 172 RYLMGERLGVHSCLVIGWVI-GQHGDSVPSVWSGMWDAKLHKDVVDSAYE-----VIKLK 225
Query: 316 QKVRLRGGLLIKKWGRSSA-----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGN 367
GL++ + + + V P
Sbjct: 226 GYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPV--------STMVKDF 277
Query: 368 PYGIAEDIVFSMPC 381
YGI +++ S+PC
Sbjct: 278 -YGIKDNVFLSLPC 290
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 61.4 bits (150), Expect = 1e-10
Identities = 50/253 (19%), Positives = 95/253 (37%), Gaps = 30/253 (11%)
Query: 142 LEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDIN 197
+E ++++ V I G + E+ DA+ +++ G + PG R L+
Sbjct: 45 VEAEVLDMQHGS-SFYPTVSIDGSDDPEICRDAD--MVVITAGP-RQKPGQSRLELVGAT 100
Query: 198 GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKC 257
I L V + N +++ NP + + K + F + T LD R +
Sbjct: 101 VNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLTGLPENQIFGSGTNLDSARLRF 159
Query: 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH---KWLEEGFTET 314
+A + GV V G H ++VP + +A I G+P+ + + E
Sbjct: 160 LIAQQTGVNVKNVHAYIA-GEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEI 218
Query: 315 IQKVRLRGGLLIKKWGRSS--AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 368
Q+V+ +I G ++ + V I++A+ ++
Sbjct: 219 HQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVLHDTNRILP---------VSSMLKDF- 268
Query: 369 YGIAEDIVFSMPC 381
+GI DI S+P
Sbjct: 269 HGI-SDICMSVPT 280
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 61.0 bits (149), Expect = 2e-10
Identities = 52/300 (17%), Positives = 102/300 (34%), Gaps = 54/300 (18%)
Query: 99 IAVSGAAGMI----ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
++V GAAG + ++ + A EV+ D P G A + +
Sbjct: 3 VSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDT---------VGQAADTNHGI- 52
Query: 155 PLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
++ YE ++ +++ G PR PG R L N I + +L+
Sbjct: 53 AYDSNTRVRQGGYEDTAGSD--VVVITAGI-PRQPGQTRIDLAGDNAPIMEDIQSSLDEH 109
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAKCQLALKAGVFYDK 269
+ + + NP + + A + RLD R + L+ +
Sbjct: 110 -NDDYISLTTSNPVDLLNRHLYE-AGDRS-REQVIGFGGRLDSARFRYVLSEEFDAPVQN 166
Query: 270 VSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKW 329
V + G H QVP F ++G ++ + + + ++ +I++
Sbjct: 167 VEGTIL-GEHGDAQVPVFSKVSVDGTDP-------EFSGDEKEQLLGDLQESAMDVIERK 218
Query: 330 GRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 381
G + A +V+A+ ++ + V G +G ED F +P
Sbjct: 219 G--ATEWGPARGVAHMVEAILHDTGEVLP---------ASVKLEGE-FGH-EDTAFGVPV 265
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 60.3 bits (147), Expect = 3e-10
Identities = 73/354 (20%), Positives = 117/354 (33%), Gaps = 70/354 (19%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFP 155
+AV GA+G I L L L S +L GVA +L
Sbjct: 3 VAVLGASGGIGQPLSLLLK------------NSPLVSRLTLYDIAHTPGVAADLSHIETR 50
Query: 156 LLREVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
+ +G + + + ++ PR PGM R L + N I A A A
Sbjct: 51 ATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAAC-AQHCP 109
Query: 215 NVKVIVVGNPCNT---NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
+ + ++ NP N+ K +T LD RA +A G+ +VS
Sbjct: 110 DAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVS 169
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLI--KKW 329
I G+ T +P ++ + T IQ+ G + K
Sbjct: 170 VPVIGGHAGKTIIPLISQCTPKVDFPQDQL-------STLTGRIQE----AGTEVVKAKA 218
Query: 330 GRSSA--------ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFS 378
G SA A S+VDAM + +V + + S PY FS
Sbjct: 219 GAGSATLSMAYAGARFVFSLVDAMNGKEGVVECS----FVKSQET--DCPY-------FS 265
Query: 379 MPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTG---EGIAF 429
P G + K++ I+ E++++ + + L +G F
Sbjct: 266 TPLLL---GKKGIEKNLGIGK-----ISPFEEKMI--AEAIPELKASIKKGEEF 309
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 59.1 bits (144), Expect = 6e-10
Identities = 46/304 (15%), Positives = 86/304 (28%), Gaps = 55/304 (18%)
Query: 86 AEEETKSWKKMVNIAV--SGAAGM-IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL 142
A E K+ K I V G G+ + K A ++ D +
Sbjct: 7 ANHENKTVNK---ITVVGGGELGIACTLAISAKGIADRLVLLDLS------------EGT 51
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
+G M+LE P ++ ++ G ++ N +F
Sbjct: 52 KGATMDLEIFNLP----NVEISKDLSASAHSK-VVIFTVNSLGSSQSYLDVVQSNVDMFR 106
Query: 203 EQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
AL S++ ++V P + K + + LD R + +
Sbjct: 107 ALVPALGHY-SQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNV 165
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRG 322
I G +V + E + ++ R
Sbjct: 166 LKAQTSGKEVWVI-GEQGEDKVLTWSGQE----------------EVVSHTSQVQLSNRA 208
Query: 323 GLLIKKWGRSSAA--STAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVF 377
L++ G+ S + + +VD++ K V G Y I ++
Sbjct: 209 MELLRVKGQRSWSVGLSVADMVDSIVNNKKKVHSV--------SALAKGY-YDINSEVFL 259
Query: 378 SMPC 381
S+PC
Sbjct: 260 SLPC 263
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 58.8 bits (143), Expect = 7e-10
Identities = 83/361 (22%), Positives = 134/361 (37%), Gaps = 80/361 (22%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL-----LGSERSL----QALEGVAM 147
+ +AV GAAG I G Q +AL L GSE SL GVA+
Sbjct: 1 MKVAVLGAAGGI--------------G--QALALLLKTQLPSGSELSLYDIAPVTPGVAV 44
Query: 148 ELEDSLFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQG 205
+L S P ++K G + E A+ L+ R PGM+R+ L ++N I
Sbjct: 45 DL--SHIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLV 102
Query: 206 KALNAVASRNVKVIVVGNPCNT---NALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
+ + A + ++ NP NT A LK A +T LD R+ +A
Sbjct: 103 QQV-AKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAEL 161
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRG 322
G +V I G+ T +P L +++ G+ E+ + ++++ G
Sbjct: 162 KGKQPGEVEVPVIGGHSGVTILP--LLSQVPGVSFT---------EQEVADLTKRIQNAG 210
Query: 323 GLLIK-KWGRSSA--------ASTAVSIVDAM--KSLVTPTPEGDWFSSGVYTNGNPYGI 371
+++ K G SA A +S+V A+ + V + V +G
Sbjct: 211 TEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVE-------CAYVEGDG----- 258
Query: 372 AEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGE---GIA 428
FS P +G V++ L + EQ L + + L + G
Sbjct: 259 QYARFFSQPLLLGKNG----VEERKSIGTL----SAFEQNAL--EGMLDTLKKDIALGEE 308
Query: 429 F 429
F
Sbjct: 309 F 309
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 58.8 bits (143), Expect = 1e-09
Identities = 65/350 (18%), Positives = 115/350 (32%), Gaps = 62/350 (17%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFP 155
+A+ GAAG I L + + L S L GV ++
Sbjct: 11 VAILGAAGGIGQPLAMLMK------------MNPLVSVLHLYDVVNAPGVTADISHMDTG 58
Query: 156 LLREVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
+ +G + ++ PR PGM R L IN I + + A
Sbjct: 59 AVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGI-AKCCP 117
Query: 215 NVKVIVVGNPCNT---NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
V ++ NP N+ A K A + K +T LD RA +A G+ V
Sbjct: 118 RAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVD 177
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIK-KWG 330
+ G+ T +P ++ + +E + +++ G +++ K G
Sbjct: 178 VPVVGGHAGVTILP-----LLSQVKPPSSFT-----QEEISYLTDRIQNGGTEVVEAKAG 227
Query: 331 RSSA--------ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCR 382
SA A + + ++ E + SS V P+ F+ R
Sbjct: 228 AGSATLSMAYAAVKFADACLRGLRG-DAGVIECAFVSSQVT--ELPF-------FASKVR 277
Query: 383 SKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTG---EGIAF 429
G + + + + E+ L +K L G +G++F
Sbjct: 278 L---GRNGIEEVYSLGP-----LNEYERIGL--EKAKKELAGSIEKGVSF 317
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 54.4 bits (132), Expect = 2e-08
Identities = 38/211 (18%), Positives = 73/211 (34%), Gaps = 15/211 (7%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEW----ALLIGAKPRGPGMERAGLLDIN 197
++ ++ +D++ L I IN + DA+ I + P +R L
Sbjct: 39 VKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFT 98
Query: 198 GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRA 255
+ G L + ++V+ NP + + P K T LD R
Sbjct: 99 SSMVQSVGTNLKES-GFHGVLVVISNPVDVITALFQHVTGFP--AHKVIGTGTLLDTARM 155
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315
+ + + VS + G H +Q + R+ G P+ +
Sbjct: 156 QRAVGEAFDLDPRSVSGYNL-GEHGNSQFVAWSTVRVMGQPIVTLADAGD---IDLAAIE 211
Query: 316 QKVRLRGGLLIKKWGRSSA--ASTAVSIVDA 344
++ R G ++ G +S A++A+ I A
Sbjct: 212 EEARKGGFTVLNGKGYTSYGVATSAIRIAKA 242
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 52.9 bits (128), Expect = 6e-08
Identities = 53/252 (21%), Positives = 88/252 (34%), Gaps = 45/252 (17%)
Query: 142 LEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDIN 197
G AM+L + + + KI G Y L + +E +++ G R PGM R L N
Sbjct: 38 AVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSE--IIVVTAGL-ARKPGMTRLDLAHKN 94
Query: 198 GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRA 255
I + K + + K++VV NP + I K P +N F +LD R
Sbjct: 95 AGIIKDIAKKIVEN-APESKILVVTNPMDVMTYIMWK-ESGKP-RNEVFGMGNQLDSQRL 151
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315
K +L + I G H + A +G E +
Sbjct: 152 KERLYNAGAR---NIRRAWIIGEHGDSMFVAKSLADFDGEVDWEAV-------------E 195
Query: 316 QKVRLRGGLLIKKWGR------SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY 369
VR +IK+ G + ++V+ ++ + + G Y
Sbjct: 196 NDVRFVAAEVIKRKGATIFGPAVAIYRMVKAVVEDTGEIIP---------TSMILQGE-Y 245
Query: 370 GIAEDIVFSMPC 381
GI E++ +P
Sbjct: 246 GI-ENVAVGVPA 256
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 3e-04
Identities = 71/498 (14%), Positives = 136/498 (27%), Gaps = 133/498 (26%)
Query: 32 SLRRRAFRPIIGPRNPTISCSVNQVQAPVAVEQDDPKSKTNDC------------YGVF- 78
S+ R + I R+ + NQV A V + P K GV
Sbjct: 106 SMMTRMY---IEQRDRL--YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 79 ----CLTYDLKAEEETKS-------WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQP 127
+ D+ + + W + N + LL+++ D
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 128 IALKLLGSE-----RSLQALEGVAMELEDSLFPLLREVKIGINP--YELFE--------- 171
+KL R L + E+ L +L V+ N + F
Sbjct: 221 SNIKLRIHSIQAELRRLLKSK----PYENCLL-VLLNVQ---NAKAWNAFNLSCKILLTT 272
Query: 172 -DAEWA-LLIGAKPRGPGME--RAGLLDING-QIFAEQGKALNAVASRNVKVIVVGNPCN 226
+ L A ++ L + K L+ + ++ NP
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL---KYLDCRPQDLPREVLTTNPRR 329
Query: 227 TNALI--CLKNAPSIPAKNFHALT--RLDENRAKCQLALKA----------GVFYD--KV 270
++I +++ + N+ + +L L+ VF +
Sbjct: 330 L-SIIAESIRDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 271 SNMTI---WGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIK 327
+ + W + + V + N L +++ K +E + + L
Sbjct: 388 PTILLSLIWFDVIKSDVMVVV----NKLHKYSLVE--KQPKES------TISIPSIYLEL 435
Query: 328 KWGRSSAASTAVSIVDAMK--------SLVTPTPEGDWFSSGVY--TNGNPYGIAE---- 373
K + + SIVD L+ P + ++S + N
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 374 ---DIVF--------SMPCRSKGD-----GDYELVKDVIFD-DYLRKRIAKTEQELL--A 414
D F S + G + K I D D +R+ + L
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
Query: 415 EKKCVAHLTGEGIAFCDL 432
E+ + + DL
Sbjct: 556 EENLICS------KYTDL 567
Score = 40.2 bits (93), Expect = 0.002
Identities = 38/202 (18%), Positives = 66/202 (32%), Gaps = 50/202 (24%)
Query: 1 MAVVAQLSPSS------YTETTRLSSSQLSLSST--HLSSLRRRAFRPIIGPRNPTISCS 52
M VV +L S T + S L L + +L R
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI--------------- 449
Query: 53 VNQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSW--------------KKMVN 98
V+ P + DD D Y + + LK E + +K+ +
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 99 IAVS-GAAGMIANHLL-FKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-- 154
+ + A+G I N L K + + P ER + A+ ++E++L
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYIC-DNDPK------YERLVNAILDFLPKIEENLICS 562
Query: 155 PLLREVKIGI-NPYE-LFEDAE 174
++I + E +FE+A
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAH 584
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.058
Identities = 45/291 (15%), Positives = 88/291 (30%), Gaps = 120/291 (41%)
Query: 208 LNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRL----------------- 250
++A ++R + + G+ L++ +P +F ++L
Sbjct: 1 MDAYSTRPL-TLSHGS---------LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA 50
Query: 251 -DENRAKCQLALKAGVF---------------YDKVSNMTIW--------GN--HSTTQV 284
DE +L K F +D+V N+ + GN H+
Sbjct: 51 DDEPTTPAELVGK---FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA---- 103
Query: 285 PDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDA 344
L A++ ++K + ++ R+ K S
Sbjct: 104 ---LAAKLLQENDTTLVKTKELIKNYI-----TARIMAKRPFDKKSNS------------ 143
Query: 345 MKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDG---DY--ELVKDVIFDD 399
+L EG+ + + +F G G DY EL ++
Sbjct: 144 --ALFRAVGEGN---AQLVA-----------IFG------GQGNTDDYFEELRD--LYQT 179
Query: 400 Y------LRKRIAKTEQELLAEKKCVAHLTGEGI---AFCDLPEDTMLPGE 441
Y L K A+T EL+ + +G+ + + P +T P +
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT--PDK 228
Score = 34.3 bits (78), Expect = 0.089
Identities = 31/240 (12%), Positives = 57/240 (23%), Gaps = 105/240 (43%)
Query: 62 VEQDDPKSKT-----------NDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIAN 110
+ ++P + T + Y + + +T+ K +N +
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS------- 1716
Query: 111 HLLFKLAAGEVLGPD---------QPIALKL-------------------------LGSE 136
F+ QP AL L LG E
Sbjct: 1717 -YTFR-------SEKGLLSATQFTQP-ALTLMEKAAFEDLKSKGLIPADATFAGHSLG-E 1766
Query: 137 RSLQALEGVA--MELEDSLFPLLREVKI-GINPYELFEDAEWAL----LIGAKPR--GPG 187
+ AL +A M +E L+ V G+ E +I P
Sbjct: 1767 YA--ALASLADVMSIES----LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 188 MERAGLLDINGQIFAEQG----------------------------KALNAVASRNVKVI 219
+ L + ++ G LN + + + +I
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII 1880
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 29.3 bits (66), Expect = 1.8
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAA 118
K+ I + GA+G + + LL +
Sbjct: 3 KVKKIVLIGASGFVGSALLNEALN 26
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi
isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Length = 272
Score = 29.4 bits (67), Expect = 2.0
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 211 VASRNVKVIVVGNPCNT---NALICLKNAPSIP 240
+ + ++K++V+ CNT AL ++ + IP
Sbjct: 62 LENHHIKMLVIA--CNTATAIALDDIQRSVGIP 92
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel,
oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1
PDB: 1pz0_A*
Length = 312
Score = 29.4 bits (67), Expect = 2.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 148 ELEDSLFPLLREVKIGINPY 167
E E + FP +E I PY
Sbjct: 184 EAEKTFFPYTKEHNISFIPY 203
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 28.6 bits (64), Expect = 3.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 85 KAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAA 118
E M N+ + GA G IA H++ +LA
Sbjct: 12 SGRENLYFQGHMKNVLILGAGGQIARHVINQLAD 45
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 5.7
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 19/35 (54%)
Query: 233 LK-NAP-SIPAKNFHALTRLDENRAKCQLALKAGV 265
LK A S PA LA+KA +
Sbjct: 29 LKLYADDSAPA-----------------LAIKATM 46
Score = 27.2 bits (59), Expect = 6.3
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 313 ETIQKVRLRGGLLIKKWGRSSAASTAVS 340
+ ++K L+ L K + SA + A+
Sbjct: 20 QALKK--LQASL--KLYADDSAPALAIK 43
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 27.2 bits (60), Expect = 8.9
Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 14/101 (13%)
Query: 98 NIAVSGAAGMIANHLLFKL-AAGEVLGPDQPIAL-----KLLGSERSLQALEGVAMELED 151
I + GA G + +L + G + A+ K+ + + + L+ ++ D
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRG-----HEVTAIVRNAGKITQTHKDINILQK---DIFD 53
Query: 152 SLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192
L + + ++ Y + D + +
Sbjct: 54 LTLSDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTV 94
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR,
AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans}
Length = 348
Score = 27.5 bits (62), Expect = 9.0
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 148 ELEDSLFPLLREVKIGINPY 167
+E + P + + Y
Sbjct: 205 TIEKDILPYAEKHNAVVLAY 224
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann
domain, PLP, cobalamin, 5'-deoxyad radical,
adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium
sticklandii} SCOP: c.1.19.4
Length = 516
Score = 27.5 bits (61), Expect = 9.5
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Query: 139 LQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDING 198
+ A+E + + L D+L+ +L IN D ++ +I AG++ G
Sbjct: 248 MGAIERLDVMLNDALYGILFR---DINMQRTMIDQNFSRII--------NGFAGVIINTG 296
Query: 199 Q 199
+
Sbjct: 297 E 297
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal
binding protein; HET: PLP B12 5AD; 2.01A {Clostridium
sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A*
3kox_A*
Length = 763
Score = 27.6 bits (61), Expect = 9.6
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 139 LQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDING 198
+ A EGV +D + +L IN F DA + I M A + I+G
Sbjct: 172 MFAEEGVNGAHQDPQYNVLYR---NINMIRSFIDACESKTI--------MAWADMAQIDG 220
Query: 199 Q 199
Sbjct: 221 A 221
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 27.7 bits (62), Expect = 9.7
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 80 LTYDLKAEEETKSWKKMV--NIAVSGAAGMIANHLLFKLAAG--EVL----GPDQPIALK 131
L DLK T + +A++G+ G++ L +L G EV+ +P
Sbjct: 129 LIEDLKFLSRTSTLFDGSPLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRF 188
Query: 132 LLGSERSLQALEGV 145
+ L+G
Sbjct: 189 WDPLNPASDLLDGA 202
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 27.4 bits (61), Expect = 9.9
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 85 KAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAA 118
+ E ++ M +IA+ GAAGM+ L +L
Sbjct: 4 SSGRENLYFQGM-HIAIIGAAGMVGRKLTQRLVK 36
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 27.3 bits (60), Expect = 9.9
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 96 MVNIAVSGAAGMIANHLLFKLAA 118
I + GAAG IA L L
Sbjct: 5 YXYITILGAAGQIAQXLTATLLT 27
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.393
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,825,373
Number of extensions: 424270
Number of successful extensions: 1215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1172
Number of HSP's successfully gapped: 72
Length of query: 442
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 345
Effective length of database: 3,993,456
Effective search space: 1377742320
Effective search space used: 1377742320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.7 bits)