BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013467
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 199/306 (65%), Positives = 238/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 7 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 66
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 67 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 126
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 127 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 186
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 187 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 246
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ+++ + ++I+F +DDP KRKPDI +AK +LGWEP V L +GL K +
Sbjct: 247 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 306
Query: 418 DFRQRI 423
FR+ +
Sbjct: 307 YFRKEL 312
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 196/306 (64%), Positives = 231/306 (75%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 29 RILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 88
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLN LGLAKRVGAR LL STSEVYGDP
Sbjct: 89 YIEVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGARLLLASTSEVYGDP 148
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET Y + GVEVR+ARIFNT+GPR +
Sbjct: 149 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVARIFNTFGPRXHXN 208
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ L P NLGNP E
Sbjct: 209 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALXNSNVSSPVNLGNPEEH 268
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ+++ + ++I+F +DDP KRKPDI +AK LGWEP V L +GL K +
Sbjct: 269 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLXLGWEPVVPLEEGLNKAIH 328
Query: 418 DFRQRI 423
FR+ +
Sbjct: 329 YFRKEL 334
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/328 (32%), Positives = 163/328 (49%), Gaps = 35/328 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+RIVVTGGAGF+GSHLVD+L+ G V+VVDN +GR+E F NP+ EL D+ +
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRRE-----FVNPSAELHVRDLKDY 55
Query: 177 LL---LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLLTSTSE 232
++ D ++H A P+ NVV T N+L A++ G R + S+S
Sbjct: 56 SWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSST 115
Query: 233 VYGDP--LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
VYGD + P++E Y PI S Y K E + Y R GV R N
Sbjct: 116 VYGDADVIPTPEEEPY----KPI---SVYGAAKAAGEVMCATYARLFGVRCLAVRYANVV 168
Query: 291 GPRMCIDDGRVVSNFVAQALRKEP--LTVYGDGKQTRSFQFVSDLVEGLMRLMEG--EHV 346
GPR+ V+ +F+ + LR+ P L V GDG Q +S+ +V D VE + + E
Sbjct: 169 GPRL---RHGVIYDFIMK-LRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMD 224
Query: 347 GPF---NLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTED------DPHKRKPDISRAK 397
PF N+GN +L++AQ+V E + +I P+T D D +++
Sbjct: 225 APFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLM 284
Query: 398 ELLGWEPKVSLRKGLPKMVKDFRQRIFG 425
+L GW P ++ + + K +D + ++G
Sbjct: 285 KLTGWRPTMTSAEAVKKTAEDLAKELWG 312
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 156/328 (47%), Gaps = 39/328 (11%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+RIVVTGGAGF+GSHLVD+L+ G V+VVD ++ + EL D+ +
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVD---------IVQRDTGGSAELHVRDLKDY 51
Query: 177 LL---LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLLTSTSE 232
++ D ++H A P+ NVV T N+L A++ G R + S+S
Sbjct: 52 SWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSST 111
Query: 233 VYGDP--LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
VYGD + P++E Y PI S Y K E + Y R GV R N
Sbjct: 112 VYGDADVIPTPEEEPY----KPI---SVYGAAKAAGEVMCATYARLFGVRCLAVRYANVV 164
Query: 291 GPRMCIDDGRVVSNFVAQALRKEP--LTVYGDGKQTRSFQFVSDLVEGLMRLMEG--EHV 346
GPR+ V+ +F+ + LR+ P L V GDG Q +S+ +V D VE + + E
Sbjct: 165 GPRL---RHGVIYDFIMK-LRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMD 220
Query: 347 GPF---NLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTED------DPHKRKPDISRAK 397
PF N+GN +L++AQ+V E + +I P+T D D +++
Sbjct: 221 APFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLM 280
Query: 398 ELLGWEPKVSLRKGLPKMVKDFRQRIFG 425
+L GW P ++ + + K +D + ++G
Sbjct: 281 KLTGWRPTMTSAEAVKKTAEDLAKELWG 308
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 147/320 (45%), Gaps = 22/320 (6%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARG------DSVIVVDNF-FTGRKENVMHHFGNPNFELI 169
+R++VTGGAGF+GSH V +L+A D VIV+D+ + G + N+ +P +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 170 RHDVVEPLLLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A 223
D+ + LL VD I H A + +TNV GT +L A G
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 224 RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
R + ST EVYG W +P+ S Y K ++ + YHR G++VRI
Sbjct: 121 RVVHVSTDEVYGS-----IDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRI 175
Query: 284 ARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343
R N YGP + +++ FV L L +YGDG R + D G+ ++ G
Sbjct: 176 TRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAG 233
Query: 344 EHVGP-FNLGNPGEFTMLELAQVVQETIDPN-AKIEFRPNTEDDPHKRKPDISRAKELLG 401
G +++G E T EL ++ +++ + + + + + + D + + LG
Sbjct: 234 GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELG 293
Query: 402 WEPKVSLRKGLPKMVKDFRQ 421
+ P+VS GL + V+ +R+
Sbjct: 294 YRPQVSFADGLARTVRWYRE 313
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 148/320 (46%), Gaps = 22/320 (6%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARG------DSVIVVDNF-FTGRKENVMHHFGNPNFELI 169
+R++VTGGAGF+GSH V +L+A D VIV+D+ + G + N+ +P +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 170 RHDVVEPLLLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A 223
D+ + LL VD I H A + +TNV GT +L A G
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 224 RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
R + ST++VYG W +P+ S Y K ++ + YHR G++VRI
Sbjct: 121 RVVHVSTNQVYGSI-----DSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRI 175
Query: 284 ARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343
R N YGP + +++ FV L L +YGDG R + D G+ ++ G
Sbjct: 176 TRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAG 233
Query: 344 EHVGP-FNLGNPGEFTMLELAQVVQETIDPN-AKIEFRPNTEDDPHKRKPDISRAKELLG 401
G +++G E T EL ++ +++ + + + + + + D + + LG
Sbjct: 234 GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELG 293
Query: 402 WEPKVSLRKGLPKMVKDFRQ 421
+ P+VS GL + V+ +R+
Sbjct: 294 YRPQVSFADGLARTVRWYRE 313
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 152/311 (48%), Gaps = 25/311 (8%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV----V 174
IVVTGGAGF+GSH+VD+L + + ++V+DN +G +E F N L++ D+ +
Sbjct: 4 IVVTGGAGFIGSHVVDKL-SESNEIVVIDNLSSGNEE-----FVNEAARLVKADLAADDI 57
Query: 175 EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTSEV 233
+ L ++++H+A NP + + NV+ T +L ++ G +R + TSTS V
Sbjct: 58 KDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTV 117
Query: 234 YGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
YG+ P E Y P S Y K E L Y ++ I R N G R
Sbjct: 118 YGEAKVIPTPEDY-----PTHPISLYGASKLACEALIESYCHTFDMQAWIYRFANVIGRR 172
Query: 294 MCIDDGRVVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG-EHVGPFNL 351
V+ +F+ + R E L + G+G+Q +S+ ++SD V+ ++ + G E V FN+
Sbjct: 173 ST---HGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNIFNI 229
Query: 352 GNPGEFTMLELAQVVQETIDPNAKIEFRPNT---EDDPHKRKPDISRAKELLGWEPKVSL 408
G+ + + +A++V E + + + F + D I + K LGW+P+ +
Sbjct: 230 GSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLKR-LGWKPRYNS 288
Query: 409 RKGLPKMVKDF 419
+ + V+D
Sbjct: 289 EEAVRMAVRDL 299
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 142/308 (46%), Gaps = 14/308 (4%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ L+I +TG GF+ SH+ RL G VI D + E++ F L+ V+
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 175 EPLLL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 229
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 230 TSEVYGD--PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++ +Y + L+ + P + Y K E L Y++ G+E RI R
Sbjct: 145 SACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFH 204
Query: 288 NTYGPRMCIDDGRVVS--NFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344
N YGP GR + F +A + ++GDG QTRSF F+ + VEG++RL + +
Sbjct: 205 NIYGPFGTWKGGREAAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 264
Query: 345 HVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEP 404
P N+G+ +M E+A++V + I P E R D + KE LGW P
Sbjct: 265 FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKEKLGWAP 323
Query: 405 KVSLRKGL 412
+ L++GL
Sbjct: 324 NMRLKEGL 331
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 142/308 (46%), Gaps = 14/308 (4%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ L+I +TG GF+ SH+ RL G VI D + E++ F L+ V+
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 175 EPLLL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 229
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 230 TSEVYGD--PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++ +Y + L+ + P + Y K E L Y++ G+E RI R
Sbjct: 145 SACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFH 204
Query: 288 NTYGPRMCIDDGR--VVSNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344
N YGP GR + F +A + ++GDG QTRSF F+ + VEG++RL + +
Sbjct: 205 NIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 264
Query: 345 HVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEP 404
P N+G+ +M E+A++V + I P E R D + KE LGW P
Sbjct: 265 FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKEKLGWAP 323
Query: 405 KVSLRKGL 412
+ L++GL
Sbjct: 324 NMRLKEGL 331
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 111 bits (277), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 142/308 (46%), Gaps = 14/308 (4%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ L+I +TG GF+ SH+ RL G VI D + E++ F L+ V+
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 175 EPLLL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 229
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 230 TSEVYGD--PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++ +Y + L+ + P + Y + E L Y++ G+E RI R
Sbjct: 145 SACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNKDFGIECRIGRFH 204
Query: 288 NTYGPRMCIDDGR--VVSNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344
N YGP GR + F +A + ++GDG QTRSF F+ + VEG++RL + +
Sbjct: 205 NIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 264
Query: 345 HVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEP 404
P N+G+ +M E+A++V + I P E R D + KE LGW P
Sbjct: 265 FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKEKLGWAP 323
Query: 405 KVSLRKGL 412
+ L++GL
Sbjct: 324 NMRLKEGL 331
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 142/308 (46%), Gaps = 14/308 (4%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ L+I +TG GF+ SH+ RL G VI D + E++ F L+ V+
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 175 EPLLL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 229
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 230 TSEVYGD--PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++ +Y + L+ + P + + K E L Y++ G+E RI R
Sbjct: 145 SACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFH 204
Query: 288 NTYGPRMCIDDGR--VVSNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344
N YGP GR + F +A + ++GDG QTRSF F+ + VEG++RL + +
Sbjct: 205 NIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 264
Query: 345 HVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEP 404
P N+G+ +M E+A++V + I P E R D + KE LGW P
Sbjct: 265 FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKEKLGWAP 323
Query: 405 KVSLRKGL 412
+ L++GL
Sbjct: 324 NMRLKEGL 331
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 149/333 (44%), Gaps = 39/333 (11%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTG---RKENVMHHFGNPNFELIRHDVV 174
RI++TGGAGF+G HL L+A G+ V V+D+ E P EL D
Sbjct: 9 RILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERD-- 66
Query: 175 EPLLLEVDQIYHLACPAS-PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE 232
L +V +YHLA S P +K P+ + NV ++L L VG + ++ ST E
Sbjct: 67 ---LSDVRLVYHLASHKSVPRSFK-QPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCE 121
Query: 233 VYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA-GVEVRIARIFNTYG 291
VYG P E +P+ RS Y K E + + R + EV I R FN YG
Sbjct: 122 VYGQADTLPTPED-----SPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYG 176
Query: 292 PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNL 351
P D +V A L + L V GDG+Q R F +++D+V+ L+ L N
Sbjct: 177 PGERPD--ALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLPSVVNF 234
Query: 352 GNPGEFTMLELAQVVQETI----------DPNAKIEFRPNTEDDPHKRKPDISRAKELLG 401
G+ ++ ++ +++Q T PN EFR +T + I +G
Sbjct: 235 GSGQSLSVNDVIRILQATSPAAEVARKQPRPNEITEFRADTALQTRQ----IGERSGGIG 290
Query: 402 WEP--KVSLRKGLPKMVKDFRQRIFGDHKEGGA 432
E +++L + + D RQRIF +E GA
Sbjct: 291 IEEGIRLTLEWWQSRDLDDIRQRIF---QEEGA 320
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 149/331 (45%), Gaps = 21/331 (6%)
Query: 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF----FTGRKENVMHHF 161
G L + I+VTGGAGF+GS+ V + ++ ++ NF ++G NV
Sbjct: 14 GTENLYFQSNAXNILVTGGAGFIGSNFVHYXLQSYETYKII-NFDALTYSGNLNNVKSIQ 72
Query: 162 GNPNFELIRHDVVEPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNM 214
+PN+ ++ ++ LLE V I + A + NP+ TNV+GT+ +
Sbjct: 73 DHPNYYFVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTL 132
Query: 215 LGLAKRV-GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDY 273
L L K+ + + ST EVYG K + P+ S Y K +A+ + + Y
Sbjct: 133 LELVKKYPHIKLVQVSTDEVYGSL----GKTGRFTEETPLAPNSPYSSSKASADXIALAY 188
Query: 274 HRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDL 333
++ + V + R N YGP + +++ V AL + L +YGDG R + V+D
Sbjct: 189 YKTYQLPVIVTRCSNNYGPYQYPE--KLIPLXVTNALEGKKLPLYGDGLNVRDWLHVTDH 246
Query: 334 VEGLMRLMEGEHVGP-FNLGNPGEFTMLELAQVVQETIDPNAK-IEFRPNTEDDPHKRKP 391
+ ++ VG +N+G E T +E+ + + + K IE+ + +
Sbjct: 247 CSAIDVVLHKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAI 306
Query: 392 DISRAKELLGWEPKVSLRKGLPKMVKDFRQR 422
+ + K WEPK + +GL + V+ + +
Sbjct: 307 NAEKXKNEFDWEPKYTFEQGLQETVQWYEKN 337
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 147/326 (45%), Gaps = 28/326 (8%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
I++ GGAG++GSH V +L+ G SV+VVDN TG ++ + N +L + +
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVF 63
Query: 179 LE--VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYG 235
+ ++ + H A + P++ NV G L +L + +F+ +ST+ YG
Sbjct: 64 TQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYG 123
Query: 236 D-PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG--P 292
+ + +ET NP + Y E K E + Y + + + +I R FN G P
Sbjct: 124 EVDVDLITEETM---TNPT---NTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGATP 177
Query: 293 RMCI-DDGRVVSNFVAQAL-----RKEPLTVYG------DGKQTRSFQFVSDLVE----G 336
I +D R ++ + L ++E + ++G DG R + V DLV G
Sbjct: 178 NGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLVAAHFLG 237
Query: 337 LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRA 396
L L G +NLGN F++ E+ V+E + E P DP + +A
Sbjct: 238 LKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPARLVASSQKA 297
Query: 397 KELLGWEPKVSLRKGLPKMVKDFRQR 422
KE LGW+P+ K + + ++ Q+
Sbjct: 298 KEKLGWDPRYVNVKTIIEHAWNWHQK 323
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 151/352 (42%), Gaps = 43/352 (12%)
Query: 109 PLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFEL 168
P R+ R+++ G GF+G+HL +RL+ + + + ++H P+F
Sbjct: 308 PACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---PHFHF 364
Query: 169 IRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
+ D+ +E + + D + L A+P+ Y NP++ + + L ++ +
Sbjct: 365 VEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR 424
Query: 223 ARFLLTSTSEVYGDPLQHPQKETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRGAGVE 280
R + STSEVYG E + V P+ R Y K+ + + Y G++
Sbjct: 425 KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQ 484
Query: 281 VRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
+ R FN GPR+ I R ++ + + P+ + GKQ R F + D +
Sbjct: 485 FTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGI 544
Query: 335 EGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVVQETIDPN-AKIEFRP----- 380
E L R++E GE + N+GNP E ++ EL +++ + + + + F P
Sbjct: 545 EALYRIIENAGNRCDGEII---NIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 601
Query: 381 ---------NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423
D RKP I A L WEPK+ +++ + + + F + +
Sbjct: 602 VVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 653
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 150/352 (42%), Gaps = 43/352 (12%)
Query: 105 GGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP 164
G P R+ R+++ G GF+G+HL +RL+ + + + ++H P
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---P 58
Query: 165 NFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 59 HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC 118
Query: 219 KRVGARFLLTSTSEVYGDPLQHPQKETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRG 276
+ R + STSEVYG E + V P+ R Y K+ + + Y
Sbjct: 119 VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEK 178
Query: 277 AGVEVRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330
G++ + R FN GPR+ I R ++ + + P+ + GKQ R F +
Sbjct: 179 EGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDI 238
Query: 331 SDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVVQETIDPN-AKIEFRP- 380
D +E L R++E GE + N+GNP E ++ EL +++ + + + + F P
Sbjct: 239 RDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEMLLASFEKHPLRHHFPPF 295
Query: 381 -------------NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419
D RKP I A L WEPK+ +++ + + + F
Sbjct: 296 AGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFF 347
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 150/352 (42%), Gaps = 43/352 (12%)
Query: 105 GGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP 164
G P R+ R+++ G GF+G+HL +RL+ + + + ++H P
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---P 58
Query: 165 NFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 59 HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC 118
Query: 219 KRVGARFLLTSTSEVYGDPLQHPQKETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRG 276
+ R + ST+EVYG E + V P+ R Y K+ + + Y
Sbjct: 119 VKYRKRIIFPSTAEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEK 178
Query: 277 AGVEVRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330
G++ + R FN GPR+ I R ++ + + P+ + GKQ R F +
Sbjct: 179 EGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDI 238
Query: 331 SDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVVQETIDPN-AKIEFRP- 380
D +E L R++E GE + N+GNP E ++ EL +++ + + + + F P
Sbjct: 239 RDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEMLLASFEKHPLRHHFPPF 295
Query: 381 -------------NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419
D RKP I A L WEPK+ +++ + + + F
Sbjct: 296 AGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFF 347
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 146/335 (43%), Gaps = 37/335 (11%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVV 174
++I++TGGAGF+GS +V +I D+V+ +D + G E++ + + D+
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60
Query: 175 EPLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA---- 223
+ + + D + HLA + P I+TN+VGT +L +A++ +
Sbjct: 61 DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120
Query: 224 ------RFLLTSTSEVYGDPLQHPQKET------YWGNVNPIGVRSCYDEGKRTAETLTM 271
RF ST EVYGD L HP + + S Y K +++ L
Sbjct: 121 DKKNNFRFHHISTDEVYGD-LPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 272 DYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331
+ R G+ + N YGP + +++ + AL +PL +YG G Q R + +V
Sbjct: 180 AWRRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQIRDWLYVE 237
Query: 332 DLVEGL-MRLMEGEHVGPFNLGNPGE-------FTMLELA-QVVQETIDPNAKIEFRPNT 382
D L M + EG+ +N+G E FT+ +L ++V + +I + +
Sbjct: 238 DHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADR 297
Query: 383 EDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
+ D + LGW+P + G+ K V+
Sbjct: 298 PGHDRRYAIDAGKISRELGWKPLETFESGIRKTVE 332
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 145/343 (42%), Gaps = 28/343 (8%)
Query: 100 GAVNSGGKIPLGLKRKGL---RIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKE 155
G V G +P+ + L ++V GGAGFVGS+LV RL+ G + V VVDN + K
Sbjct: 13 GLVPRGSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKI 72
Query: 156 NVMHHFGNPNFELIRHDVVEPLLL-----EVDQIYHLACPASPVHYKFNPVKTIKTNVVG 210
NV H P + + LL E D ++HLA +P+ + N +
Sbjct: 73 NVPDH---PAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLT 129
Query: 211 TLNM---LGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAE 267
TL + L KR+ + + + V+ S Y K E
Sbjct: 130 TLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGE 189
Query: 268 TLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGR-----------VVSNFVAQALRKEPLT 316
++ YH+ + AR N YGP + GR V F+ +AL+ PL
Sbjct: 190 FYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLP 249
Query: 317 VYGDGKQTRSFQFVSDLVEGLMRL-MEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAK 375
+ G TR F FV D+ GL+ +G G +N+ + E ++ +LA + E N +
Sbjct: 250 LENGGVATRDFIFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTE 309
Query: 376 IEFRPNTE-DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
++ P D+ KR +A+ LG+ VS+ GL K ++
Sbjct: 310 LDRLPKRPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIE 352
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 147/340 (43%), Gaps = 43/340 (12%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV--- 173
+R+++ G GF+G+HL +RL+ + + + ++H P+F + D+
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---PHFHFVEGDISIH 57
Query: 174 ---VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
+E + + D + L A+P+ Y NP++ + + L ++ + R + ST
Sbjct: 58 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 117
Query: 231 SEVYGDPLQHPQKETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
SEVYG E + V P+ R Y K+ + + Y G++ + R FN
Sbjct: 118 SEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 177
Query: 289 TYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME 342
GPR+ I R ++ + + P+ + GKQ R F + D +E L R++E
Sbjct: 178 WMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIE 237
Query: 343 -------GEHVGPFNLGNP-GEFTMLELAQVVQETIDPN-AKIEFRP------------- 380
GE + N+GNP E ++ EL +++ + + + + F P
Sbjct: 238 NAGNRCDGEII---NIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYY 294
Query: 381 -NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419
D RKP I A L WEPK+ +++ + + + F
Sbjct: 295 GKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFF 334
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 149/352 (42%), Gaps = 43/352 (12%)
Query: 105 GGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP 164
G P R+ R+++ G GF+G+HL +RL+ + + + ++H P
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---P 58
Query: 165 NFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 59 HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC 118
Query: 219 KRVGARFLLTSTSEVYGDPLQHPQKETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRG 276
+ R + STSEVYG E + V P+ R Y K+ + + Y
Sbjct: 119 VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEK 178
Query: 277 AGVEVRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330
G++ + R FN GPR+ I R ++ + + P+ + GKQ R F +
Sbjct: 179 EGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDI 238
Query: 331 SDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVVQETIDPN-AKIEFRP- 380
D +E L R++E GE + N+GNP E ++ EL +++ + + + + F P
Sbjct: 239 RDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEMLLASFEKHPLRHHFPPF 295
Query: 381 -------------NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419
D KP I A L WEPK+ +++ + + + F
Sbjct: 296 AGFRVVESSSYYGKGYQDVEHEKPSIRNAHRCLDWEPKIDMQETIDETLDFF 347
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 148/343 (43%), Gaps = 38/343 (11%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFE---LIRH 171
K ++++ G GF+G HL R++ D + + T R +++ H FE I
Sbjct: 23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINK 82
Query: 172 DVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231
+ VE + + D I L A+P Y P++ + + L ++ A + G + STS
Sbjct: 83 EWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTS 142
Query: 232 EVYG---DPLQHPQKETY-WGNVN-PIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
EVYG D P +G +N P + +C K+ + + Y G+ + R
Sbjct: 143 EVYGMCADEQFDPDASALTYGPINKPRWIYAC---SKQLMDRVIWGYGM-EGLNFTLFRP 198
Query: 287 FNTYGPRMCI------DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRL 340
FN GP + RVV+ F+ +R E +++ G Q R+F +V D + LM++
Sbjct: 199 FNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISALMKI 258
Query: 341 ME---GEHVGP-FNLGNP-GEFT-------MLELAQVVQETIDPNAKIEFRPNTE----- 383
+E G G +N+GNP F+ MLELA E D +++ T
Sbjct: 259 IENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYYG 318
Query: 384 ---DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423
D R P I + LGW P+ + L ++ + +R +
Sbjct: 319 NGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGHV 361
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 147/323 (45%), Gaps = 31/323 (9%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSV--IVVDNF-FTGRKENVMHHFGNPNFELIRHDV- 173
I+VTGGAGF+GS+ V + V V+D + G K N+ G+ EL+ D+
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGD-RVELVVGDIA 64
Query: 174 ----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 229
V+ L + D I H A + + +P I TN +GT +L A++ RF S
Sbjct: 65 DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVS 124
Query: 230 TSEVYGD-PLQHP---------QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
T EVYGD PL+ +K T N NP S Y K ++ + + R GV
Sbjct: 125 TDEVYGDLPLREDLPGHGEGPGEKFTAETNYNP---SSPYSSTKAASDLIVKAWVRSFGV 181
Query: 280 EVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337
+ I+ N YGP I+ R ++N +A K +YG+GK R + +D G+
Sbjct: 182 KATISNCSNNYGPYQHIEKFIPRQITNILAGIKPK----LYGEGKNVRDWIHTNDHSTGV 237
Query: 338 MRLMEGEHVGP-FNLGNPGEFTMLELAQVVQETI-DPNAKIEFRPNTEDDPHKRKPDISR 395
++ +G + +G GE E+ +++ E + P + + + D S+
Sbjct: 238 WAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASK 297
Query: 396 AKELLGWEPKVS-LRKGLPKMVK 417
++ LGW P+ + +GL + ++
Sbjct: 298 LRDELGWTPQFTDFSEGLEETIQ 320
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 149/352 (42%), Gaps = 43/352 (12%)
Query: 105 GGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP 164
G P R+ R+++ G GF+G+HL +RL+ + + + ++H P
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---P 58
Query: 165 NFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 59 HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC 118
Query: 219 KRVGARFLLTSTSEVYGDPLQHPQKETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRG 276
+ R + STSEVYG E + V P+ R Y K+ + + Y
Sbjct: 119 VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEK 178
Query: 277 AGVEVRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330
G++ + R FN GPR+ I R ++ + + P+ + GKQ R F +
Sbjct: 179 EGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDI 238
Query: 331 SDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVVQETIDPN-AKIEFRP- 380
D +E L R++E GE + N+GNP E ++ EL +++ + + + + F P
Sbjct: 239 RDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEMLLASFEKHPLRHHFPPF 295
Query: 381 -------------NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419
D KP I A L WEPK+ +++ + + + F
Sbjct: 296 AGFRVVESSSYYGKGYQDVEHMKPSIRNAHRCLDWEPKIDMQETIDETLDFF 347
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 149/352 (42%), Gaps = 43/352 (12%)
Query: 105 GGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP 164
G P R+ R+++ G GF+G+HL +RL+ + + + ++H P
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---P 58
Query: 165 NFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 59 HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC 118
Query: 219 KRVGARFLLTSTSEVYGDPLQHPQKETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRG 276
+ R + STSEVYG E + V P+ R Y K+ + + Y
Sbjct: 119 VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEK 178
Query: 277 AGVEVRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330
G++ + R FN GPR+ I R ++ + + P+ + GKQ R F +
Sbjct: 179 EGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDI 238
Query: 331 SDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVVQETIDPN-AKIEFRP- 380
D +E L R++E GE + N+GNP E ++ EL +++ + + + + F P
Sbjct: 239 RDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEMLLASFEKHPLRHHFPPF 295
Query: 381 -------------NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419
D KP I A L WEPK+ +++ + + + F
Sbjct: 296 AGFRVVESSSYYGKGYQDVEHYKPSIRNAHRCLDWEPKIDMQETIDETLDFF 347
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 139/332 (41%), Gaps = 36/332 (10%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN-PNFELIRHDV--- 173
++++TGG GF+GS+L +++G +IV DN + +H + NFE + D+
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNK 62
Query: 174 --VEPLLLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLL 227
V L+ + D +HLA + NP + NV GTLN+L ++ + +
Sbjct: 63 NDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIY 122
Query: 228 TSTSEVYGDPLQHPQKETY-----------WGNVNPIGVRSCYDEGKRTAETLTMDYHRG 276
+ST++VYGD Q+ ET + + S Y K A+ +DY R
Sbjct: 123 SSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARI 182
Query: 277 AGVEVRIARIFNTYGPR-MCIDDGRVVSNFVAQALR-----KEPLTVYGDGKQTRSFQFV 330
G+ + R + YG R D V F +A+ +P T+ G+GKQ R
Sbjct: 183 FGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHA 242
Query: 331 SDLVEGLMRLMEGEHV---GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFR----PNTE 383
D++ + FN+G G + + ++ I+ R P E
Sbjct: 243 EDMISLYFTALANVSKIRGNAFNIG--GTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRE 300
Query: 384 DDPHKRKPDISRAKELLGWEPKVSLRKGLPKM 415
D DI + + W PKVS + G+ KM
Sbjct: 301 SDQRVFVADIKKITNAIDWSPKVSAKDGVQKM 332
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 143/313 (45%), Gaps = 19/313 (6%)
Query: 116 GLRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNFFTGRK-ENVMHHFGNPNFELIRHD 172
++++VTGG GF+GS+ + ++ + VI +D G N+ +P + ++ D
Sbjct: 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGD 62
Query: 173 V-----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARF 225
V V+ L+ +VD + HLA + +P + +NV+GT +L +R RF
Sbjct: 63 VADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRF 122
Query: 226 LLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
+ ST EVYGD L+ E + + S Y K ++ L + + R + I R
Sbjct: 123 VHVSTDEVYGDILKGSFTEN-----DRLMPSSPYSATKAASDMLVLGWTRTYNLNASITR 177
Query: 286 IFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL-MRLMEGE 344
N YGP + +++ + +A + +YG GK R + +V D V + + L++GE
Sbjct: 178 CTNNYGPYQFPE--KLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKGE 235
Query: 345 HVGPFNLGNPGEFTMLELAQVVQETIDPNAK-IEFRPNTEDDPHKRKPDISRAKELLGWE 403
+N+ E T LE+ +++ + + IE + + D + L W
Sbjct: 236 SREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLDSWKITRDLKWR 295
Query: 404 PKVSLRKGLPKMV 416
PK + +G+ K +
Sbjct: 296 PKYTFDEGIKKTI 308
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 151/318 (47%), Gaps = 24/318 (7%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNF--ELIRHDVV 174
+R++VTGGAGF+GSH+V+ L+ARG V V+DN TG++ENV G P F +L + V
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPK--GVPFFRVDLRDKEGV 58
Query: 175 EPLLLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS- 231
E E + H A AS +PV + N++G LN+L ++ G L+ +++
Sbjct: 59 ERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTG 118
Query: 232 -EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
+YG+ + + E W P +S Y K E Y + G++ R N Y
Sbjct: 119 GAIYGEVPEGERAEETW----PPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVY 174
Query: 291 GPRMCID-DGRVVSNFVAQALRKEPLTVY-----GDGKQTRSFQFVSDLVEG-LMRLMEG 343
GPR + VV+ F + L+ P+T+Y GD R + +V D+ E + L
Sbjct: 175 GPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALALFSL 234
Query: 344 EHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELL-GW 402
E G +N+G T E+ V E +++ P D + +S K + GW
Sbjct: 235 E--GIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSV--LSPLKLMAHGW 290
Query: 403 EPKVSLRKGLPKMVKDFR 420
PKV ++G+ V FR
Sbjct: 291 RPKVGFQEGIRLTVDHFR 308
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 142/332 (42%), Gaps = 37/332 (11%)
Query: 118 RIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVE 175
+I++TGGAGF+GS LV +I D+V+VVD + G ++ + F + D+ +
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 176 PLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA---------- 218
L + D + HLA + P I+TN+VGT +L A
Sbjct: 63 RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122
Query: 219 KRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAG 278
K+ RF ST EVYGD + ++ P S Y K +++ L + R G
Sbjct: 123 KKSAFRFHHISTDEVYGDL---HSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 279 VEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLM 338
+ I N YGP + +++ + AL + L VYG+G+Q R + +V D L
Sbjct: 180 LPTLITNCSNNYGPYHFPE--KLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHARALY 237
Query: 339 RLMEGEHVGP-FNLGNPGEFTMLELAQVVQETID---PNAK---------IEFRPNTEDD 385
+ VG +N+G E L++ + + E ++ PN I F +
Sbjct: 238 CVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHYRDLITFVADRPGH 297
Query: 386 PHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
+ D S+ LG P+ + G+ K V+
Sbjct: 298 DLRYAIDASKIARELGCVPQETFESGMRKTVQ 329
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 146/335 (43%), Gaps = 44/335 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+ST+ VYGD + P E++ P G +S Y + K E + D + + +
Sbjct: 121 FSSTATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLVEGLMRLME------GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE 383
V DL +G + ME G H+ +NLG ++L++ + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 384 DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
D D S+A L W + + L +M +D
Sbjct: 294 GDLPAYWADASKADRELNWR----VTRTLDEMAQD 324
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 146/315 (46%), Gaps = 27/315 (8%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN------VMHHFGNPNFELIRHDV 173
++TG AGF+GS+L+++L+ VI +DNF TG + N ++ F I D+
Sbjct: 42 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 101
Query: 174 -----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 227
E ++ VD + H A S +P+ T TN+ G LN+L AK + F
Sbjct: 102 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTY 161
Query: 228 TSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++S YGD P+ E G NP+ S Y K E Y R G + R F
Sbjct: 162 AASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIGLRYF 216
Query: 288 NTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE-GLMRLMEGE 344
N +G R + V+ + A L+ + + + GDG+ +R F ++ ++++ ++ + +
Sbjct: 217 NVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKD 276
Query: 345 HV--GPFNLGNPGEFTMLELAQVVQETID-----PNAKIEFRPNTEDDPHKRKPDISRAK 397
+N+ T+ EL+ + + ++ I++R D + D+++A
Sbjct: 277 SAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAI 336
Query: 398 ELLGWEPKVSLRKGL 412
+LL + P + +R+GL
Sbjct: 337 DLLKYRPNIKIREGL 351
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 146/315 (46%), Gaps = 27/315 (8%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN------VMHHFGNPNFELIRHDV 173
++TG AGF+GS+L+++L+ VI +DNF TG + N ++ F I D+
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 88
Query: 174 -----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 227
E ++ VD + H A S +P+ T TN+ G LN+L AK + F
Sbjct: 89 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTY 148
Query: 228 TSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++S YGD P+ E G NP+ S Y K E Y R G + R F
Sbjct: 149 AASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIGLRYF 203
Query: 288 NTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE-GLMRLMEGE 344
N +G R + V+ + A L+ + + + GDG+ +R F ++ ++++ ++ + +
Sbjct: 204 NVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKD 263
Query: 345 HV--GPFNLGNPGEFTMLELAQVVQETID-----PNAKIEFRPNTEDDPHKRKPDISRAK 397
+N+ T+ EL+ + + ++ I++R D + D+++A
Sbjct: 264 SAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAI 323
Query: 398 ELLGWEPKVSLRKGL 412
+LL + P + +R+GL
Sbjct: 324 DLLKYRPNIKIREGL 338
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 146/315 (46%), Gaps = 27/315 (8%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN------VMHHFGNPNFELIRHDV 173
++TG AGF+GS+L+++L+ VI +DNF TG + N ++ F I D+
Sbjct: 23 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 82
Query: 174 -----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 227
E ++ VD + H A S +P+ T TN+ G LN+L AK + F
Sbjct: 83 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTY 142
Query: 228 TSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++S YGD P+ E G NP+ S Y K E Y R G + R F
Sbjct: 143 AASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIGLRYF 197
Query: 288 NTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE-GLMRLMEGE 344
N +G R + V+ + A L+ + + + GDG+ +R F ++ ++++ ++ + +
Sbjct: 198 NVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKD 257
Query: 345 HV--GPFNLGNPGEFTMLELAQVVQETID-----PNAKIEFRPNTEDDPHKRKPDISRAK 397
+N+ T+ EL+ + + ++ I++R D + D+++A
Sbjct: 258 SAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAI 317
Query: 398 ELLGWEPKVSLRKGL 412
+LL + P + +R+GL
Sbjct: 318 DLLKYRPNIKIREGL 332
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 146/315 (46%), Gaps = 27/315 (8%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN------VMHHFGNPNFELIRHDV 173
++TG AGF+GS+L+++L+ VI +DNF TG + N ++ F I D+
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 88
Query: 174 -----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 227
E ++ VD + H A S +P+ T TN+ G LN+L AK + F
Sbjct: 89 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTY 148
Query: 228 TSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++S YGD P+ E G NP+ S Y K E Y R G + R F
Sbjct: 149 AASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIGLRYF 203
Query: 288 NTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE-GLMRLMEGE 344
N +G R + V+ + A L+ + + + GDG+ +R F ++ ++++ ++ + +
Sbjct: 204 NVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKD 263
Query: 345 HV--GPFNLGNPGEFTMLELAQVVQETID-----PNAKIEFRPNTEDDPHKRKPDISRAK 397
+N+ T+ EL+ + + ++ I++R D + D+++A
Sbjct: 264 SAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRASQADVTKAI 323
Query: 398 ELLGWEPKVSLRKGL 412
+LL + P + +R+GL
Sbjct: 324 DLLKYRPNIKIREGL 338
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 148/333 (44%), Gaps = 53/333 (15%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV--- 173
+R ++TG AGFVG +L + L + V+ F T R PN E+I D+
Sbjct: 13 MRALITGVAGFVGKYLANHLTEQN-----VEVFGTSRNNEAKL----PNVEMISLDIMDS 63
Query: 174 --VEPLLLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK--RVGARFLL 227
V+ ++ ++ D I+HLA +S N T TNV GTL++L + + R L
Sbjct: 64 QRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILT 123
Query: 228 TSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
+SE YG L + + P+ S Y K + L Y + G+++ R F
Sbjct: 124 IGSSEEYGMILPEESPVSEENQLRPM---SPYGVSKASVGMLARQYVKAYGMDIIHTRTF 180
Query: 288 NTYGPRMCIDDGRVVSNFVAQAL-----RKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME 342
N GP + G V +F Q + ++EP+ G+ + R F V D+V+ L +
Sbjct: 181 NHIGPGQSL--GFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQ 238
Query: 343 GEHVGP-FNLGNPGEFTMLELAQVVQETID-----PNAKIEFRPNTEDDPHKRKP----- 391
G +N+ + + +Q+ +D N KI+ TE +P + +P
Sbjct: 239 YGKTGDVYNVCSG-------IGTRIQDVLDLLLAMANVKID----TELNPLQLRPSEVPT 287
Query: 392 ---DISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421
R K+ GW+P++ L K L ++++ +RQ
Sbjct: 288 LIGSNKRLKDSTGWKPRIPLEKSLFEILQSYRQ 320
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 146/335 (43%), Gaps = 44/335 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+S++ VYGD + P E++ P G +S Y + K E + D + + +
Sbjct: 121 FSSSATVYGDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLVEGLMRLME------GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE 383
V DL +G + ME G H+ +NLG ++L++ + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 384 DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
D D S+A L W + + L +M +D
Sbjct: 294 GDLPAYWADASKADRELNWR----VTRTLDEMAQD 324
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 146/335 (43%), Gaps = 44/335 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+S++ VYGD + P E++ P G +S Y + K E + D + + +
Sbjct: 121 FSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLVEGLMRLME------GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE 383
V DL +G + ME G H+ +NLG ++L++ + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 384 DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
D D S+A L W + + L +M +D
Sbjct: 294 GDLPAYWADASKADRELNWR----VTRTLDEMAQD 324
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 146/335 (43%), Gaps = 44/335 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+S++ VYGD + P E++ P G +S Y + K E + D + + +
Sbjct: 121 FSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLVEGLMRLME------GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE 383
V DL +G + ME G H+ +NLG ++L++ + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 384 DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
D D S+A L W + + L +M +D
Sbjct: 294 GDLPACWADASKADRELNWR----VTRTLDEMAQD 324
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 145/335 (43%), Gaps = 44/335 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+S + VYGD + P E++ P G +S Y + K E + D + + +
Sbjct: 121 FSSAATVYGDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLVEGLMRLME------GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE 383
V DL +G + ME G H+ +NLG ++L++ + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 384 DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
D D S+A L W + + L +M +D
Sbjct: 294 GDLPAYWADASKADRELNWR----VTRTLDEMAQD 324
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 145/335 (43%), Gaps = 44/335 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+S + VYGD + P E++ P G +S Y + K E + D + + +
Sbjct: 121 FSSAATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLVEGLMRLME------GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE 383
V DL +G + ME G H+ +NLG ++L++ + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 384 DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
D D S+A L W + + L +M +D
Sbjct: 294 GDLPAYWADASKADRELNWR----VTRTLDEMAQD 324
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 145/335 (43%), Gaps = 44/335 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+S + VYGD + P E++ P G +S Y + K E + D + + +
Sbjct: 121 FSSVATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLVEGLMRLME------GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE 383
V DL +G + ME G H+ +NLG ++L++ + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 384 DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
D D S+A L W + + L +M +D
Sbjct: 294 GDLPAYWADASKADRELNWR----VTRTLDEMAQD 324
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 146/335 (43%), Gaps = 44/335 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+S++ VYGD + P E++ P G +S + + K E + D + + +
Sbjct: 121 FSSSATVYGDQPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLVEGLMRLME------GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE 383
V DL +G + ME G H+ +NLG ++L++ + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 384 DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
D D S+A L W + + L +M +D
Sbjct: 294 GDLPAYWADASKADRELNWR----VTRTLDEMAQD 324
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 145/335 (43%), Gaps = 44/335 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+S + VYGD + P E++ P G +S + + K E + D + + +
Sbjct: 121 FSSAATVYGDQPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLVEGLMRLME------GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE 383
V DL +G + ME G H+ +NLG ++L++ + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 384 DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
D D S+A L W + + L +M +D
Sbjct: 294 GDLPAYWADASKADRELNWR----VTRTLDEMAQD 324
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 145/335 (43%), Gaps = 44/335 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+S + VYGD + P E++ P G +S + + K E + D + + +
Sbjct: 121 FSSAATVYGDNPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLVEGLMRLME------GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE 383
V DL +G + ME G H+ +NLG ++L++ + F P E
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHI--YNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 384 DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
D D S+A L W + + L +M +D
Sbjct: 294 GDLPAYWADASKADRELNWR----VTRTLDEMAQD 324
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 140/315 (44%), Gaps = 27/315 (8%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN------VMHHFGNPNFELIRHDV 173
++TG AGF+GS+L++ L+ V+ +DNF TG + N ++ NF+ I+ D+
Sbjct: 31 LITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDI 90
Query: 174 -----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 227
VD + H A S +P+ + TN+ G LNML A+ + F
Sbjct: 91 RNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTY 150
Query: 228 TSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++S YGD P+ E G P+ S Y K E + R G R F
Sbjct: 151 AASSSTYGDHPGLPKVEDTIG--KPL---SPYAVTKYVNELYADVFSRCYGFSTIGLRYF 205
Query: 288 NTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG-LMRLMEGE 344
N +G R + V+ + + ++ + + + GDG+ +R F ++ + V+ L+ G
Sbjct: 206 NVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGL 265
Query: 345 HV--GPFNLGNPGEFTMLELAQVVQETIDPNA-----KIEFRPNTEDDPHKRKPDISRAK 397
+N+ G ++ +L +++ + N + +R E D DIS+A
Sbjct: 266 DARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAA 325
Query: 398 ELLGWEPKVSLRKGL 412
+LLG+ PK + G+
Sbjct: 326 KLLGYAPKYDVSAGV 340
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 140/327 (42%), Gaps = 33/327 (10%)
Query: 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPN 165
G +P G K ++ +TG G +GSH+ + L+ RGD V+ +DNF TGR+E++ H PN
Sbjct: 13 GLVPRGSHMK--KVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDH---PN 67
Query: 166 FELIR-----HDVVEPLL--LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+ H +V L+ L+ D + H A +N TN VG N++ A
Sbjct: 68 LTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYN---DTLTNCVGGSNVVQAA 124
Query: 219 KRVG-ARFLLTSTSEVYG-DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG 276
K+ RF+ T+ YG P+Q P + + N S Y K E DY
Sbjct: 125 KKNNVGRFVYFQTALCYGVKPIQQPVRLDHPRN----PANSSYAISKSANE----DYLEY 176
Query: 277 AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 336
+G++ R+ N GPR G + F + K+ K R F FV DL
Sbjct: 177 SGLDFVTFRLANVVGPRNV--SGPLPIFFQRLSEGKKCFVT----KARRDFVFVKDLARA 230
Query: 337 LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNA--KIEFRPNTEDDPHKRKPDIS 394
+R ++G G ++ + + + EL V E + + + E R DD D S
Sbjct: 231 TVRAVDGVGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPS 290
Query: 395 RAKELLGWEPKVSLRKGLPKMVKDFRQ 421
R + G L++ + V FR+
Sbjct: 291 RTIQDFGKIEFTPLKETVAAAVAYFRE 317
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 148/340 (43%), Gaps = 48/340 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK------ENV--MHHFGNPNFELI 169
+++VTGGAG++GSH V L+ G +V+DNF + E++ + + E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 170 RHDVVEPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
D+++ L+ + H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 223 ARFLL-TSTSEVYGDPLQHPQKETY--WGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
+ L+ +S++ VYG+P P E + G NP Y + K E + D +
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP------YGKSKFFIEEMIRDLCQADKT 177
Query: 280 -EVRIARIFNTYGPRM--CI-DDGRVVSN----FVAQAL--RKEPLTVYG------DGKQ 323
V + R FN G CI +D + + N +V+Q R+E L V+G DG
Sbjct: 178 WNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 324 TRSFQFVSDLVEG----LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFR 379
R + V DL +G L +L E +NLG +++L++ Q +++ +
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVV 297
Query: 380 PNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419
E D + S A+E LGW + GL +M +D
Sbjct: 298 ARREGDVAACYANPSLAQEELGWTAAL----GLDRMCEDL 333
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 148/340 (43%), Gaps = 48/340 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK------ENV--MHHFGNPNFELI 169
+++VTGGAG++GSH V L+ G +V+DNF + E++ + + E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 170 RHDVVEPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
D+++ L+ + H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 223 ARFLL-TSTSEVYGDPLQHPQKETY--WGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
+ L+ +S++ VYG+P P E + G NP Y + K E + D +
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP------YGKSKFFIEEMIRDLCQADKT 177
Query: 280 -EVRIARIFNTYGPRM--CI-DDGRVVSN----FVAQAL--RKEPLTVYG------DGKQ 323
V + R FN G CI +D + + N +V+Q R+E L V+G DG
Sbjct: 178 WNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 324 TRSFQFVSDLVEG----LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFR 379
R + V DL +G L +L E +NLG +++L++ Q +++ +
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVV 297
Query: 380 PNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419
E D + S A+E LGW + GL +M +D
Sbjct: 298 ARREGDVAACYANPSLAQEELGWTAAL----GLDRMCEDL 333
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 147/340 (43%), Gaps = 48/340 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK------ENV--MHHFGNPNFELI 169
+++VTGGAG++GSH V L+ G +V+DNF + E++ + + E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 170 RHDVVEPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
D+++ L+ + H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 223 ARFLL-TSTSEVYGDPLQHPQKETY--WGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
+ L+ +S++ VYG+P P E + G NP Y + K E + D +
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP------YGKSKFFIEEMIRDLCQADKT 177
Query: 280 -EVRIARIFNTYGPRM--CI-DDGRVVSN----FVAQAL--RKEPLTVYG------DGKQ 323
+ R FN G CI +D + + N +V+Q R+E L V+G DG
Sbjct: 178 WNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 324 TRSFQFVSDLVEG----LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFR 379
R + V DL +G L +L E +NLG +++L++ Q +++ +
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVV 297
Query: 380 PNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419
E D + S A+E LGW + GL +M +D
Sbjct: 298 ARREGDVAACYANPSLAQEELGWTAAL----GLDRMCEDL 333
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 123/274 (44%), Gaps = 36/274 (13%)
Query: 119 IVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNF-----FTGRKENVMHHFGNP---NFEL 168
I++TGGAGFVGS+L V+V+D F F+ + + + HF N E+
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEV 72
Query: 169 IRHDVVEPL------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
I D+ PL L D ++H A + N +KTN LN+L +A+
Sbjct: 73 IAADINNPLDLRRLEKLHFDYLFHQAAVSDTT--MLNQELVMKTNYQAFLNLLEIARSKK 130
Query: 223 ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV----RSCYDEGKRTAETLTMDYHRGAG 278
A+ + S++ VYG+ N +P V + C DE + H
Sbjct: 131 AKVIYASSAGVYGNT---KAPNVVGKNESPENVYGFSKLCMDEFVLS--------HSNDN 179
Query: 279 VEVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 336
V+V + R FN YGPR + +V A+ + + ++ G+Q R F ++ D+++
Sbjct: 180 VQVGL-RYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQA 238
Query: 337 LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETI 370
++ M+ + G +N+G + E+ +++E +
Sbjct: 239 NVKAMKAQKSGVYNVGYSQARSYNEIVSILKEHL 272
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 147/349 (42%), Gaps = 50/349 (14%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM-------HHFGNPNFELIRH 171
++VTGGAG++GSH V LI G +V DN ++V HH +L
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDR 73
Query: 172 DVVEPLLLE--VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLT 228
+E + E +D + H A + P++ N++GT+ +L L ++ ++F+ +
Sbjct: 74 KGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFS 133
Query: 229 STSEVYGDPLQHPQ-----KETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
S++ VYGD + P +E G NP Y K E + D + +
Sbjct: 134 SSATVYGDATRFPNMIPIPEECPLGPTNP------YGHTKYAIENILNDLYNSDKKSWKF 187
Query: 284 A--RIFNTYGPR---MCIDDGRVVSN----FVAQAL--RKEPLTVYG------DGKQTRS 326
A R FN G + +D + N ++AQ R+E L ++G DG R
Sbjct: 188 AILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRD 247
Query: 327 FQFVSDLVEGLMRLME-----GEHVG---PFNLGNPGEFTMLELAQVVQET--IDPNAKI 376
+ V DL +G + ++ E+ G +NLG+ T+ E+ + ID K+
Sbjct: 248 YIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKV 307
Query: 377 EFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFG 425
R + KPD RAK L W+ ++ + + K + FG
Sbjct: 308 TGRRAGDVLNLTAKPD--RAKRELKWQTELQVEDSCKDLWKWTTENPFG 354
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 90/355 (25%), Positives = 150/355 (42%), Gaps = 67/355 (18%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVV----DNFFTGRKENVMH--HFGNPNFELIRHDV 173
++TG G GS+L + L+ +G V + +F T R +++ H NP F L D+
Sbjct: 5 LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDL 64
Query: 174 VEP-----LLLEV--DQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNML------GLAK 219
+ +L EV D++Y+L S V F +P T + +GTL +L GL K
Sbjct: 65 SDTSNLTRILREVQPDEVYNLGA-MSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEK 123
Query: 220 RVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
+ RF STSE+YG + PQKET P RS Y K A +T++Y G+
Sbjct: 124 KT--RFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGM 176
Query: 280 EVRIARIFNTYGPR-----MCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
+FN PR + R ++N +AQ L E G+ R + D V
Sbjct: 177 YACNGILFNHESPRRGETFVTRKITRAIAN-IAQGL--ESCLYLGNMDSLRDWGHAKDYV 233
Query: 335 EGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTED---------- 384
+ +++ E F + ++++ + ++ + + E E
Sbjct: 234 KMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHD 293
Query: 385 -------------DPHKRKP--------DISRAKELLGWEPKVSLRKGLPKMVKD 418
DP +P D ++A E LGW+P+++LR+ + +MV +
Sbjct: 294 APGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVAN 348
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 136/312 (43%), Gaps = 34/312 (10%)
Query: 111 GLKRKG--LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFEL 168
GL +G +RI++TGGAG +GS+L++ + +G ++V+DNF TG++E + G +
Sbjct: 13 GLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAG---LSV 69
Query: 169 IRHDVVEPLLLEVDQIYHLACPASPVH----YKFNP---VKTIKTNVVGTLNMLGLAKRV 221
I V + LLE + + P VH YK +P + TNV G++N+ A +
Sbjct: 70 IEGSVTDAGLLE--RAFDSFKPTHVVHSAAAYK-DPDDWAEDAATNVQGSINVAKAASKA 126
Query: 222 GARFLLT-STSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVE 280
G + LL T+ YG P P +P + Y K E M + V
Sbjct: 127 GVKRLLNFQTALCYGRPATVPIPID-----SPTAPFTSYGISKTAGEAFLM----MSDVP 177
Query: 281 VRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD-LVEGLMR 339
V R+ N GPR+ I G + + + + L+ D R F +SD L +
Sbjct: 178 VVSLRLANVTGPRLAI--GPIPTFY--KRLKAGQKCFCSD--TVRDFLDMSDFLAIADLS 231
Query: 340 LMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAK--IEFRPNTEDDPHKRKPDISRAK 397
L EG G FN+ ++ E+ VV + + + DD D S+ +
Sbjct: 232 LQEGRPTGVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVPSVVLDPSKTE 291
Query: 398 ELLGWEPKVSLR 409
GW+ KV +
Sbjct: 292 TEFGWKAKVDFK 303
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/378 (23%), Positives = 150/378 (39%), Gaps = 77/378 (20%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFF-TGRKENVMHHFGNPNFELIRHDVV 174
+R++V GGAG++GSH V L+ + SV++VD+ T K + + N +L + D
Sbjct: 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGP 62
Query: 175 EP------LLLEV-------------------DQIYHLACPASPVHYKFNPVKTIKTNVV 209
+P LEV D + H+ + +P+K NVV
Sbjct: 63 KPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVV 122
Query: 210 GTLNML-GLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV------RSCYDEG 262
G L +L + + + +S++ ++G+P + N PI + S Y E
Sbjct: 123 GILRLLQAMLLHKCDKIIFSSSAAIFGNPTM----GSVSTNAEPIDINAKKSPESPYGES 178
Query: 263 KRTAETLTMDYHRGAGVEVRIARIFNTYGPR---------------MCIDDGRVVSNFV- 306
K AE + D G++ R FN G + I GRV+S+
Sbjct: 179 KLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAP 238
Query: 307 -------AQALRKEPLTVYG------DGKQTRSFQFVSDLVEG-LMRLMEGEHVGP---- 348
A + + ++G DG R + V DL ++ L E +GP
Sbjct: 239 DQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKS 298
Query: 349 -----FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWE 403
FNLG +++ E+ +V ++T + E DP +A+E+LGW+
Sbjct: 299 KYFSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWK 358
Query: 404 PKVSLRKGLPKMVKDFRQ 421
PK + + + F++
Sbjct: 359 PKYDTLEAIMETSWKFQR 376
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 121/302 (40%), Gaps = 18/302 (5%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
L+I VTGG GF+G ++V+ + G++ I++ G K + + ++ L D++
Sbjct: 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSI-GNKAINDYEYRVSDYTL--EDLINQ 59
Query: 177 LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTSEVYG 235
L +VD + HLA + N + T N+ + + ST Y
Sbjct: 60 -LNDVDAVVHLAATRGSQ----GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYS 114
Query: 236 DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295
D P W Y K E + Y R G+ ++ R + YG
Sbjct: 115 DETSLP-----WNEKELPLPDLXYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYGFNE- 168
Query: 296 IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV-GPFNLGNP 354
+ ++ F QA E LT++ + R F + D + ++ ++ E V G FN+G+
Sbjct: 169 -KNNYXINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVSGTFNIGSG 227
Query: 355 GEFTMLELAQVVQETIDPNAKIEFR-PNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLP 413
T E+A + + + PN + H D S+AKELL + + +
Sbjct: 228 DALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYXDSSKAKELLDFSTDYNFATAVE 287
Query: 414 KM 415
++
Sbjct: 288 EI 289
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 127/303 (41%), Gaps = 26/303 (8%)
Query: 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH 171
L + +RI+VTGG+G VG + +++A G + D F K+ +L
Sbjct: 2 LYFQSMRILVTGGSGLVGK-AIQKVVADGAGLPGEDWVFVSSKDA----------DLTDT 50
Query: 172 DVVEPLLLEVD--QIYHLACPASPV--HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 227
L +V + HLA + + K+N + + NV N+L A VGAR ++
Sbjct: 51 AQTRALFEKVQPTHVIHLAAMVGGLFRNIKYN-LDFWRKNVHMNDNVLHSAFEVGARKVV 109
Query: 228 TSTSE-VYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
+ S ++ D +P ET N P Y KR + Y + G
Sbjct: 110 SCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIP 169
Query: 287 FNTYGPR--MCIDDGRVVSNFVAQA-LRK---EPLTVYGDGKQTRSFQFVSDLVEGLMRL 340
N +GP I+DG V+ + + L K LTV+G G R F + DL + + +
Sbjct: 170 TNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWV 229
Query: 341 M-EGEHVGP--FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAK 397
+ E V P ++G E ++ E A+ V E +D + ++ F D K+ S+ +
Sbjct: 230 LREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLR 289
Query: 398 ELL 400
L
Sbjct: 290 TYL 292
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 127/304 (41%), Gaps = 26/304 (8%)
Query: 111 GLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIR 170
L + +RI+VTGG+G VG + +++A G + D F K+ +L
Sbjct: 2 NLYFQSMRILVTGGSGLVGK-AIQKVVADGAGLPGEDWVFVSSKDA----------DLTD 50
Query: 171 HDVVEPLLLEVD--QIYHLACPASPV--HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 226
L +V + HLA + + K+N + + NV N+L A VGAR +
Sbjct: 51 TAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYN-LDFWRKNVHMNDNVLHSAFEVGARKV 109
Query: 227 LTSTSE-VYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
++ S ++ D +P ET N P Y KR + Y + G
Sbjct: 110 VSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVI 169
Query: 286 IFNTYGPR--MCIDDGRVVSNFVAQA-LRK---EPLTVYGDGKQTRSFQFVSDLVEGLMR 339
N +GP I+DG V+ + + L K LTV+G G R F + DL + +
Sbjct: 170 PTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIW 229
Query: 340 LM-EGEHVGP--FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRA 396
++ E V P ++G E ++ E A+ V E +D + ++ F D K+ S+
Sbjct: 230 VLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKL 289
Query: 397 KELL 400
+ L
Sbjct: 290 RTYL 293
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 136/335 (40%), Gaps = 49/335 (14%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV--MHHFGNPNFELIRHDVVEP 176
I+VTGGAG++GSH L+A G V++ DN ++E + + DV +
Sbjct: 8 ILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDE 67
Query: 177 LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLG------------LAKRVGAR 224
L +I+ + +H F +K + +V + + +R R
Sbjct: 68 RALA--RIFDAHPITAAIH--FAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKR 123
Query: 225 FLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIA 284
+ +S++ VYG P + P ET+ P+ + Y + K AE + D A R+A
Sbjct: 124 IVFSSSATVYGVPERSPIDETF-----PLSATNPYGQTKLMAEQILRDVE-AADPSWRVA 177
Query: 285 --RIFNTYGPR---MCIDDGRVVSN----FVAQAL--RKEPLTVYG------DGKQTRSF 327
R FN G + +D + N +VAQ + E L V+G DG R +
Sbjct: 178 TLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDY 237
Query: 328 QFVSDLVEGLMRLMEG----EHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE 383
V DL G + ++ + NLG +++LE+ + ++ E
Sbjct: 238 IHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRP 297
Query: 384 DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
D + + + A E +GW+ + + L +M D
Sbjct: 298 GDVAECYANPAAAAETIGWKAE----RDLERMCAD 328
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 150/360 (41%), Gaps = 75/360 (20%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARG--------DSVIVVDNFFTGRKENVMH-HFGN-P 164
+G R+ VTG GF GS L L G D+ V F R ++M H G+
Sbjct: 8 QGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDLMESHIGDIR 67
Query: 165 NFELIRHDVVEPLLLEVDQIYHLAC-PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG- 222
+FE +R + E + + ++H+A P + Y+ P+KT TNV+GT+++L K+VG
Sbjct: 68 DFEKLRSSIAE---FKPEIVFHMAAQPLVRLSYE-QPIKTYSTNVMGTVHLLETVKQVGN 123
Query: 223 ARFLLTSTSEVYGDPLQHPQKETYWG--NVNPIGVRSCYDEGKRTAETLTMDY------- 273
+ ++ TS+ D +E WG P+G Y K AE + +
Sbjct: 124 IKAVVNITSDKCYD-----NREWVWGYRENEPMGGYDPYSNSKGCAELVASAFRNSFFNP 178
Query: 274 --HRGAGVEVRIARIFNTYG------PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325
+ GV + R N G R+ D R N Q + + P ++ R
Sbjct: 179 ANYEQHGVGLASVRAGNVIGGGDWAKDRLIPDILRSFEN-NQQVIIRNPYSI-------R 230
Query: 326 SFQFVSDLVEGLM-----------RLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNA 374
+Q V + + G + + EG + GP + E A+ V+ +D
Sbjct: 231 PWQHVLEPLSGYIVVAQRLYTEGAKFSEGWNFGPRD----------EDAKTVEFIVDKMV 280
Query: 375 KI-----EFRPNTEDDPHKR---KPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFGD 426
+ + + E+ PH+ K D S+A LGW P+ L + L ++VK + I G+
Sbjct: 281 TLWGDDASWLLDGENHPHEAHYLKLDCSKANMQLGWHPRWGLTETLSRIVKWHKAWIRGE 340
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 126/328 (38%), Gaps = 46/328 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVD-----NFFTGRKENVMHHFGNPNFELIRHD 172
R+ + G G VGS + +L RGD +V+ N R +H F F R
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSR---AVHDF----FASER-- 55
Query: 173 VVEPLLLEVDQIYHLACPAS-PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230
+DQ+Y A V P I N++ N++ A + + L +
Sbjct: 56 --------IDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGS 107
Query: 231 SEVYGDPLQHP--QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S +Y + P + E G + P Y K L Y+R G + R N
Sbjct: 108 SCIYPKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTN 165
Query: 289 TYGPRMCI--DDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLM 341
YGP + V+ + A A + + V+G G R F V D+ + +M
Sbjct: 166 LYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVM 225
Query: 342 EGEH----------VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKP 391
E H + N+G + T+ ELAQ + + + ++ F + D ++
Sbjct: 226 ELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLL 285
Query: 392 DISRAKELLGWEPKVSLRKGLPKMVKDF 419
D++R + LGW ++SL GL + F
Sbjct: 286 DVTRLHQ-LGWYHEISLEAGLASTYQWF 312
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 85/349 (24%), Positives = 142/349 (40%), Gaps = 68/349 (19%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVV----DNFFTGRKENVMHHFGNP------NFELI 169
++TG G GS+L + L+ +G V + +F TGR E H + NP N +L
Sbjct: 28 LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIE---HLYKNPQAHIEGNMKLH 84
Query: 170 RHDVVEPLLL-----EVD--QIYHLACPASPVHYKFNPVK-TIKTNVVGTLNMLGLAKRV 221
D+ + L EV +IY+L S V F+ + T + VGTL +L K
Sbjct: 85 YGDLTDSTCLVKIINEVKPTEIYNLGAQ-SHVKISFDLAEYTADVDGVGTLRLLDAVKTC 143
Query: 222 G----ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA 277
G +F STSE+YG + PQKET P RS Y K A + +++
Sbjct: 144 GLINSVKFYQASTSELYGKVQEIPQKET-----TPFYPRSPYGAAKLYAYWIVVNFREAY 198
Query: 278 GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY---------GDGKQTRSFQ 328
+ +FN PR +NFV + + + +Y G+ R +
Sbjct: 199 NLFAVNGILFNHESPRRG-------ANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWG 251
Query: 329 FVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQ---------VVQETIDPN----AK 375
D VE + +++ + F + ++ E + +V E + N K
Sbjct: 252 HAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCK 311
Query: 376 IEFRPNTEDDPHKRKP--------DISRAKELLGWEPKVSLRKGLPKMV 416
+ + D +P D ++AK+ L W+P+V+ + + +MV
Sbjct: 312 ETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMV 360
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 136/341 (39%), Gaps = 64/341 (18%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVV----DNFFTGRKENVMHHFGNPNFELIRH---- 171
++TG G GS+L + L+ +G V + NF T R ++ N N L++
Sbjct: 32 LITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYAD 91
Query: 172 -----------DVVEPLLLEVDQIYHLACPASPVHYKFN-PVKTIKTNVVGTLNMLGLAK 219
DV++P D++Y+LA S V F P T G L +L +
Sbjct: 92 LTDASSLRRWIDVIKP-----DEVYNLAA-QSHVAVSFEIPDYTADVVATGALRLLEAVR 145
Query: 220 R------VGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDY 273
++ +SE++G PQ ET P RS Y K A T++Y
Sbjct: 146 SHTIDSGRTVKYYQAGSSEMFGST-PPPQSET-----TPFHPRSPYAASKCAAHWYTVNY 199
Query: 274 HRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRK---------EPLTVYGDGKQT 324
G+ +FN PR NFV + + + + G+ + +
Sbjct: 200 REAYGLFACNGILFNHESPRRG-------ENFVTRKITRALGRIKVGLQTKLFLGNLQAS 252
Query: 325 RSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAK--IE----- 377
R + F D VE + +++ E + + T+ E V + N K +E
Sbjct: 253 RDWGFAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRY 312
Query: 378 FRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
FRP D+ + D S+AKE+LGW+P+V K + MV +
Sbjct: 313 FRPAEVDN---LQGDASKAKEVLGWKPQVGFEKLVKMMVDE 350
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 125/328 (38%), Gaps = 46/328 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVD-----NFFTGRKENVMHHFGNPNFELIRHD 172
R+ + G G VGS + +L RGD +V+ N R +H F F R
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSR---AVHDF----FASER-- 55
Query: 173 VVEPLLLEVDQIYHLACPAS-PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230
+DQ+Y A V P I N++ N++ A + + L +
Sbjct: 56 --------IDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGS 107
Query: 231 SEVYGDPLQHP--QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S +Y + P + E G + P Y K L Y+R G + R N
Sbjct: 108 SCIYPKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTN 165
Query: 289 TYGPRMCI--DDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLM 341
YGP + V+ + A A + V+G G R F V D+ + +M
Sbjct: 166 LYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVM 225
Query: 342 EGEH----------VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKP 391
E H + N+G + T+ ELAQ + + + ++ F + D ++
Sbjct: 226 ELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLL 285
Query: 392 DISRAKELLGWEPKVSLRKGLPKMVKDF 419
D++R + LGW ++SL GL + F
Sbjct: 286 DVTRLHQ-LGWYHEISLEAGLASTYQWF 312
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 124/328 (37%), Gaps = 46/328 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVD-----NFFTGRKENVMHHFGNPNFELIRHD 172
R+ + G G VGS + +L RGD +V+ N R +H F F R
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSR---AVHDF----FASER-- 55
Query: 173 VVEPLLLEVDQIYHLACPAS-PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230
+DQ+Y A V P I N++ N++ A + + L
Sbjct: 56 --------IDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGA 107
Query: 231 SEVYGDPLQHP--QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S +Y + P + E G + P Y K L Y+R G + R N
Sbjct: 108 SCIYPKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTN 165
Query: 289 TYGPRMCI--DDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLM 341
YGP + V+ + A A + V+G G R F V D+ + +M
Sbjct: 166 LYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVM 225
Query: 342 EGEH----------VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKP 391
E H + N+G + T+ ELAQ + + + ++ F + D ++
Sbjct: 226 ELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLL 285
Query: 392 DISRAKELLGWEPKVSLRKGLPKMVKDF 419
D++R + LGW ++SL GL + F
Sbjct: 286 DVTRLHQ-LGWYHEISLEAGLASTYQWF 312
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 125/328 (38%), Gaps = 46/328 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVD-----NFFTGRKENVMHHFGNPNFELIRHD 172
R+ + G G VGS + +L RGD +V+ N R +H F F R
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSR---AVHDF----FASER-- 55
Query: 173 VVEPLLLEVDQIYHLACPAS-PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230
+DQ+Y A V P I N++ N++ A + + L +
Sbjct: 56 --------IDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGS 107
Query: 231 SEVYGDPLQHP--QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S +Y + P + E G + P Y + L Y+R G + R N
Sbjct: 108 SCIYPKLAKQPMAESELLQGTLEP--TNEPYAIARIAGIKLCESYNRQYGRDYRSVMPTN 165
Query: 289 TYGPRMCI--DDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLM 341
YGP + V+ + A A + V+G G R F V D+ + +M
Sbjct: 166 LYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVM 225
Query: 342 EGEH----------VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKP 391
E H + N+G + T+ ELAQ + + + ++ F + D ++
Sbjct: 226 ELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLL 285
Query: 392 DISRAKELLGWEPKVSLRKGLPKMVKDF 419
D++R + LGW ++SL GL + F
Sbjct: 286 DVTRLHQ-LGWYHEISLEAGLASTYQWF 312
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 125/328 (38%), Gaps = 46/328 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVD-----NFFTGRKENVMHHFGNPNFELIRHD 172
R+ + G G VGS + +L RGD +V+ N R +H F F R
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSR---AVHDF----FASER-- 55
Query: 173 VVEPLLLEVDQIYHLACPASP-VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230
+DQ+Y A V P I N++ N++ A + + L +
Sbjct: 56 --------IDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGS 107
Query: 231 SEVYGDPLQHP--QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S +Y + P + E G + P Y K L Y+R G + R N
Sbjct: 108 SCIYPKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTN 165
Query: 289 TYGPRMCI--DDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLM 341
YGP + V+ + A A + V+G G R F V D+ + +M
Sbjct: 166 LYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVM 225
Query: 342 EGEH----------VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKP 391
E H + N+G + T+ +LAQ + + + ++ F + D ++
Sbjct: 226 ELAHEVWLENTQPMLSHINVGTGVDCTIRDLAQTIAKVVGYKGRVVFDASKPDGTPRKLL 285
Query: 392 DISRAKELLGWEPKVSLRKGLPKMVKDF 419
D++R + LGW ++SL GL + F
Sbjct: 286 DVTRLHQ-LGWYHEISLEAGLASTYQWF 312
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 124/328 (37%), Gaps = 46/328 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVD-----NFFTGRKENVMHHFGNPNFELIRHD 172
R+ + G G VGS + +L RGD +V+ N R +H F F R
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSR---AVHDF----FASER-- 55
Query: 173 VVEPLLLEVDQIYHLACPAS-PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230
+DQ+Y A V P I N++ N++ A + + L +
Sbjct: 56 --------IDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGS 107
Query: 231 SEVYGDPLQHP--QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S +Y + P + E G + P K L Y+R G + R N
Sbjct: 108 SCIYPKLAKQPMAESELLQGTLEPTNEPEAI--AKIAGIKLCESYNRQYGRDYRSVMPTN 165
Query: 289 TYGPRMCI--DDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLM 341
YGP + V+ + A A + V+G G R F V D+ + +M
Sbjct: 166 LYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVM 225
Query: 342 EGEH----------VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKP 391
E H + N+G + T+ ELAQ + + + ++ F + D ++
Sbjct: 226 ELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLL 285
Query: 392 DISRAKELLGWEPKVSLRKGLPKMVKDF 419
D++R + LGW ++SL GL + F
Sbjct: 286 DVTRLHQ-LGWYHEISLEAGLASTYQWF 312
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 136/348 (39%), Gaps = 53/348 (15%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSV--------IVVDNFFTGRKENVMH-HFG--- 162
+G R+ VTG GF G L L G +V V F T R + M G
Sbjct: 8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIR 67
Query: 163 --NPNFELIRHDVVEPLLLEVDQIYHLAC-PASPVHYKFNPVKTIKTNVVGTLNMLGLAK 219
N E IR + + ++H+A P + Y PV+T TNV+GT+ +L +
Sbjct: 68 DQNKLLESIRE-------FQPEIVFHMAAQPLVRLSYS-EPVETYSTNVMGTVYLLEAIR 119
Query: 220 RVGA-RFLLTSTSEVYGDPLQHPQKETYWG--NVNPIGVRSCYDEGKRTAETLTMDYHRG 276
VG + ++ TS+ D KE WG +G Y K AE +T Y
Sbjct: 120 HVGGVKAVVNITSDKCYD-----NKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNS 174
Query: 277 ---------AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327
G V R N G D R+V + + + +P+ + + R +
Sbjct: 175 FFNPANYGQHGTAVATVRAGNVIGGGDWALD-RIVPDILRAFEQSQPVIIR-NPHAIRPW 232
Query: 328 QFVSDLVEGLMRLME------GEHVGPFNLGNPGEFTMLELAQVVQETID---PNAKIEF 378
Q V + + G + L + E+ +N G P + + +V++ + A +
Sbjct: 233 QHVLEPLSGYLLLAQKLYTDGAEYAEGWNFG-PNDADATPVKNIVEQMVKYWGEGASWQL 291
Query: 379 RPNTE-DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFG 425
N + H K D S+AK LGW P+ +L L +V + + G
Sbjct: 292 DGNAHPHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSG 339
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 115/254 (45%), Gaps = 23/254 (9%)
Query: 183 QIYHLACPASPVHYKFN-PVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYGDPLQ 239
++Y+LA S V +N PV T + +G ++L ++ RF STSE++G
Sbjct: 89 EVYNLAAQ-SFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQA 147
Query: 240 HPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID-D 298
Q E P RS Y K +T++Y G+ +FN P I+
Sbjct: 148 ERQDEN-----TPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFV 202
Query: 299 GRVVSNFVAQ-ALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
R V++ VA+ L K+ G+ R + F D VE + +++ + + +
Sbjct: 203 TRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKADDYVVATGVTT 262
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKP---DI-----SRAKELLGWEPKVSLR 409
T+ ++ Q+ E + +++R + DP +P D+ ++A+ +LGW+P+ SL
Sbjct: 263 TVRDMCQIAFEHV----GLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLD 318
Query: 410 KGLPKMVKDFRQRI 423
+ + MV+ +R+
Sbjct: 319 ELIRMMVEADLRRV 332
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 86/230 (37%), Gaps = 47/230 (20%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH---DV 173
+ IV+TG GFVG +L L + D HH FE+ R +
Sbjct: 1 MNIVITGAKGFVGKNLKADLTSTTD-----------------HHI----FEVHRQTKEEE 39
Query: 174 VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 233
+E LL+ D I HLA P H K + + + + L++L + A L +S
Sbjct: 40 LESALLKADFIVHLAGVNRPEHDKEFSLGNV-SYLDHVLDILTRNTKKPAILLSSSIQAT 98
Query: 234 YGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
+P Y E K E L +Y G V I R N +G
Sbjct: 99 QDNP---------------------YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKW 137
Query: 294 MCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343
+ V++ F + R E + V D + +V D+V + R +EG
Sbjct: 138 CKPNYNSVIATFCYKIARNEEIQV-NDRNVELTLNYVDDIVAEIKRAIEG 186
>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus In Space Group
C2221
Length = 369
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 85/228 (37%), Gaps = 47/228 (20%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH---DVVE 175
IV+TG GFVG +L L + D HH FE+ R + +E
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTD-----------------HHI----FEVHRQTKEEELE 41
Query: 176 PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235
LL+ D I HLA P H K + + + + L++L + A L +S
Sbjct: 42 SALLKADFIVHLAGVNRPEHDKEFSLGNV-SYLDHVLDILTRNTKKPAILLSSSIQATQD 100
Query: 236 DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295
+P Y E K E L +Y G V I R N +G
Sbjct: 101 NP---------------------YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCK 139
Query: 296 IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343
+ V++ F + R E + V D + +V D+V + R +EG
Sbjct: 140 PNYNSVIATFCYKIARNEEIQV-NDRNVELTLNYVDDIVAEIKRAIEG 186
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 102/251 (40%), Gaps = 33/251 (13%)
Query: 119 IVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRK------ENVMHHFGNPNFELIRH 171
I+VTGGAGF+GS++V L +G ++VVDN G K N+ + +F LI+
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDF-LIQI 60
Query: 172 DVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231
E +V+ I+H +S + + + N + +L FL S++
Sbjct: 61 MAGEE-FGDVEAIFHEGAXSSTTEW--DGKYMMDNNYQYSKELLHYCLEREIPFLYASSA 117
Query: 232 EVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
YG D ++ + E P+ V Y K + A ++ R F
Sbjct: 118 ATYGGRTSDFIESREYE------KPLNV---YGYSKFLFDEYVRQILPEANSQIVGFRYF 168
Query: 288 NTYGPRMCIDDGRVVSNFVAQALRKE------PLTVYGDGKQTRSFQFVSDLVEGLMRLM 341
N YGPR G + S VA L + P G R F +V D+ + + +
Sbjct: 169 NVYGPREG-HKGSMAS--VAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFL 225
Query: 342 EGEHVGPFNLG 352
E G FNLG
Sbjct: 226 ENGVSGIFNLG 236
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 103/249 (41%), Gaps = 29/249 (11%)
Query: 119 IVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRK------ENVMHHFGNPNFELIRH 171
I+VTGGAGF+GS++V L +G ++VVDN G K N+ + +F LI+
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDF-LIQI 107
Query: 172 DVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231
E +V+ I+H +S + + + N + +L FL S++
Sbjct: 108 MAGEE-FGDVEAIFHEGACSSTTEW--DGKYMMDNNYQYSKELLHYCLEREIPFLYASSA 164
Query: 232 EVYGD-PLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNT 289
YG + Y +N G + +DE R + L A ++ R FN
Sbjct: 165 ATYGGRTSDFIESREYEKPLNVFGYSKFLFDEYVR--QILPE-----ANSQIVGFRYFNV 217
Query: 290 YGPRMCIDDGRVVSNFVAQALRKE------PLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343
YGPR G + S VA L + P G R F +V D+ + + +E
Sbjct: 218 YGPREG-HKGSMAS--VAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLEN 274
Query: 344 EHVGPFNLG 352
G FNLG
Sbjct: 275 GVSGIFNLG 283
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 33/247 (13%)
Query: 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD----NFFTGRKENVMHHFGNPN-FELIR 170
G R ++TG G G++L L+ +G V D F + R + G N ++I
Sbjct: 3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWR----LKELGIENDVKIIH 58
Query: 171 HDVVE-------PLLLEVDQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNMLGLAKRV- 221
D++E ++ D++Y+LA S V F P+ T + + +G L +L + V
Sbjct: 59 MDLLEFSNIIRTIEKVQPDEVYNLAA-QSFVGVSFEQPILTAEVDAIGVLRILEALRTVK 117
Query: 222 -GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVE 280
+F STSE++G + PQ E P RS Y K +T++Y +
Sbjct: 118 PDTKFYQASTSEMFGKVQEIPQTEK-----TPFYPRSPYAVAKLFGHWITVNYREAYNMF 172
Query: 281 VRIARIFNTYGPRMCIDDGRVVSNFVAQALRK-----EPLTVYGDGKQTRSFQFVSDLVE 335
+FN P I+ V+ + +L + + V G+ R + + + VE
Sbjct: 173 ACSGILFNHESPLRGIE---FVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVE 229
Query: 336 GLMRLME 342
+ +M+
Sbjct: 230 AMWLMMQ 236
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 129/322 (40%), Gaps = 31/322 (9%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
I+VTG +G +G+ LV L + V+ + R + ++ D ++ +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFI---TLDVSNRDEIDRAV 58
Query: 179 --LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK--RVGARFLLTSTSEVY 234
+D I+HLA S K +P K N+ GT N+L AK RV + ++ ST V+
Sbjct: 59 EKYSIDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRV-EKVVIPSTIGVF 116
Query: 235 GDPLQHPQKETYWGNVNPIGV---RSCYDEGKRTAETLTMDYHRGAGVEVRIARI--FNT 289
G ET V I + R+ Y K AE L Y+ G++VR R +
Sbjct: 117 G-------PETPKNKVPSITITRPRTMYGVTKIAAELLGQYYYEKFGLDVRSLRYPGIIS 169
Query: 290 YGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---- 345
Y A+++E Y + ++ D ++ L+ L E +
Sbjct: 170 YKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEADRDKLV 229
Query: 346 -VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKP---DISRAKELLG 401
+N+ FT EL ++E I P +IE++ + D P D S A G
Sbjct: 230 LRNGYNV-TAYTFTPSELYSKIKERI-PEFEIEYKEDFRDKIAATWPESLDSSEASNEWG 287
Query: 402 WEPKVSLRKGLPKMVKDFRQRI 423
+ + L + + M+ +++
Sbjct: 288 FSIEYDLDRTIDDMIDHISEKL 309
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 131/359 (36%), Gaps = 80/359 (22%)
Query: 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG------------- 162
G R++V GG G+ G L + V +VDN + H G
Sbjct: 11 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLV---RRLFDHQLGLESLTPIASIHDR 67
Query: 163 --------NPNFELIRHDVVEPLLL-------EVDQIYHL----ACPASPVHYKFNPVKT 203
+ EL D+ + L E D + H + P S + + V T
Sbjct: 68 ISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMID-RSRAVYT 126
Query: 204 IKTNVVGTLNMLGLAKRVGARFLLTSTSEV--YGDP-------------------LQHPQ 242
NV+GTLN+L K G L + YG P L +P+
Sbjct: 127 QHNNVIGTLNVLFAIKEFGEECHLVKLGAMGEYGTPNIDIEEGYITITHNGRTDTLPYPK 186
Query: 243 KETYWGNVNPIG-----VRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMC 295
+ + + +++ + +C G R D ++G GV+ + R+
Sbjct: 187 QASSFYHLSKVHDSHNIAFTCKAWGIRAT-----DLNQGVVYGVKTDETEMHEELRNRLD 241
Query: 296 IDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL-MRLMEGEHVGPFNLG 352
D G ++ F QA PLTVYG G QTR + + D V+ + + + G F +
Sbjct: 242 YDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVF 301
Query: 353 N--PGEFTMLELAQVVQET-----IDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEP 404
N +F++ ELA +V + +D P E + H ++ E LG EP
Sbjct: 302 NQFTEQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLME-LGLEP 359
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 131/359 (36%), Gaps = 80/359 (22%)
Query: 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG------------- 162
G R++V GG G+ G L + V +VDN + H G
Sbjct: 11 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLV---RRLFDHQLGLESLTPIASIHDR 67
Query: 163 --------NPNFELIRHDVVEPLLL-------EVDQIYHL----ACPASPVHYKFNPVKT 203
+ EL D+ + L E D + H + P S + + V T
Sbjct: 68 ISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMID-RSRAVYT 126
Query: 204 IKTNVVGTLNMLGLAKRVGARFLLTS--TSEVYGDP-------------------LQHPQ 242
NV+GTLN+L K G L T YG P L +P+
Sbjct: 127 QHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPK 186
Query: 243 KETYWGNVNPIG-----VRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMC 295
+ + + +++ + +C G R D ++G GV+ + R+
Sbjct: 187 QASSFYHLSKVHDSHNIAFTCKAWGIRAT-----DLNQGVVYGVKTDETEMHEELRNRLD 241
Query: 296 IDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL-MRLMEGEHVGPFNLG 352
D G ++ F QA PLTVYG G QTR + + D V+ + + + G F +
Sbjct: 242 YDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVF 301
Query: 353 N--PGEFTMLELAQVVQET-----IDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEP 404
N +F++ ELA +V + +D P E + H ++ E LG EP
Sbjct: 302 NQFTEQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLME-LGLEP 359
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 130/357 (36%), Gaps = 80/357 (22%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG--------------- 162
R++V GG G+ G L + V +VDN + H G
Sbjct: 3 RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLV---RRLFDHQLGLESLTPIASIHDRIS 59
Query: 163 ------NPNFELIRHDVVEPLLL-------EVDQIYHL----ACPASPVHYKFNPVKTIK 205
+ EL D+ + L E D + H + P S + + V T
Sbjct: 60 RWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMID-RSRAVYTQH 118
Query: 206 TNVVGTLNMLGLAKRVGARFLLTS--TSEVYGDP-------------------LQHPQKE 244
NV+GTLN+L K G L T YG P L +P++
Sbjct: 119 NNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQA 178
Query: 245 TYWGNVNPIG-----VRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCID 297
+ + +++ + +C G R D ++G GV+ + R+ D
Sbjct: 179 SSFYHLSKVHDSHNIAFTCKAWGIRAT-----DLNQGVVYGVKTDETEMHEELRNRLDYD 233
Query: 298 D--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL-MRLMEGEHVGPFNLGN- 353
G ++ F QA PLTVYG G QTR + + D V+ + + + G F + N
Sbjct: 234 AVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQ 293
Query: 354 -PGEFTMLELAQVVQET-----IDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEP 404
+F++ ELA +V + +D P E + H ++ E LG EP
Sbjct: 294 FTEQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLME-LGLEP 349
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 129/322 (40%), Gaps = 31/322 (9%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
I+VTG +G +G+ LV L + V+ + R + ++ D ++ +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFI---TLDVSNRDEIDRAV 58
Query: 179 --LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK--RVGARFLLTSTSEVY 234
+D I+HLA S K +P K N+ GT N+L AK RV + ++ ST V+
Sbjct: 59 EKYSIDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRV-EKVVIPSTIGVF 116
Query: 235 GDPLQHPQKETYWGNVNPIGV---RSCYDEGKRTAETLTMDYHRGAGVEVRIARI--FNT 289
G ET V I + R+ + K AE L Y+ G++VR R +
Sbjct: 117 G-------PETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGIIS 169
Query: 290 YGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---- 345
Y A+++E Y + ++ D ++ L+ L E +
Sbjct: 170 YKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEADRDKLV 229
Query: 346 -VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKP---DISRAKELLG 401
+N+ FT EL ++E I P +IE++ + D P D S A G
Sbjct: 230 LRNGYNV-TAYTFTPSELYSKIKERI-PEFEIEYKEDFRDKIAATWPESLDSSEASNEWG 287
Query: 402 WEPKVSLRKGLPKMVKDFRQRI 423
+ + L + + M+ +++
Sbjct: 288 FSIEYDLDRTIDDMIDHISEKL 309
>pdb|3SC6|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|D Chain D, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|E Chain E, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|F Chain F, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
Length = 287
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 25/165 (15%)
Query: 207 NVVGTLNMLGLAKRVGARFLLTSTSEVY-GDPLQHPQKETYWGNVNPIGVRSCYDEGKRT 265
N +G N+ ++ VGA+ + ST V+ GD P+ + N PI + Y K
Sbjct: 83 NAIGARNVAVASQLVGAKLVYISTDYVFQGD---RPEGYDEFHNPAPINI---YGASKYA 136
Query: 266 AETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALR----KEPLTVYGDG 321
E + H + VR + ++ YG +NFV +R +E ++V D
Sbjct: 137 GEQFVKELHNKYFI-VRTSWLYGKYG-----------NNFVKTMIRLGKEREEISVVAD- 183
Query: 322 KQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVV 366
Q S +V+DL + +L+ G +++ N G + E A+ +
Sbjct: 184 -QIGSPTYVADLNVMINKLIHTSLYGTYHVSNTGSCSWFEFAKKI 227
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 122/308 (39%), Gaps = 45/308 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV------------MHHFGNPN 165
R+ VTGG GF+GS ++ L+ G SV RK +V +H F N
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFF---N 59
Query: 166 FELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTI--KTNVVGTLNML--GLAKRV 221
+L D + I+H ASP+ + + + I K V G L +L + +
Sbjct: 60 ADLSNPDSFAAAIEGCVGIFH---TASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKT 116
Query: 222 GARFLLTSTSEV--YGDPLQHPQKETYWGNVN------PIGVRSCYDEGKRTAETLTMDY 273
RF+ TS+ + + E+ W +V+ P G Y K AE +++
Sbjct: 117 VKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWN--YAVSKTLAEKAVLEF 174
Query: 274 HRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF---- 329
G++V + I P + GR V + ++ K + V G +Q +F
Sbjct: 175 GEQNGIDV-VTLIL----PFIV---GRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVH 226
Query: 330 VSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKR 389
V D+ + L+E G +P + E++Q++ P +I ++ R
Sbjct: 227 VDDVARAHIYLLENSVPGGRYNCSPFIVPIEEMSQLLSAKY-PEYQILTVDELKEIKGAR 285
Query: 390 KPDISRAK 397
PD++ K
Sbjct: 286 LPDLNTKK 293
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 104/269 (38%), Gaps = 29/269 (10%)
Query: 119 IVVTGGAGFVGSHLVDRLI--ARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV--V 174
I++TGG G G V +++ +IV + E M F +P DV +
Sbjct: 24 ILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAME-FNDPRMRFFIGDVRDL 82
Query: 175 EPL---LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231
E L L VD H A ++NP++ IKTN++G N++ + ++ ++
Sbjct: 83 ERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALST 142
Query: 232 EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG 291
+ +P+ +G + C D+ +A ++ + + + R N G
Sbjct: 143 DKAANPIN------LYG-----ATKLCSDKLFVSAN----NFKGSSQTQFSVVRYGNVVG 187
Query: 292 PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNL 351
R G VV F K D + TR + + + V +++ ++ H G +
Sbjct: 188 SR-----GSVVPFFKKLVQNKASEIPITDIRMTRFWITLDEGVSFVLKSLKRMHGGEIFV 242
Query: 352 GNPGEFTMLELAQVVQETIDPNAKIEFRP 380
M +LA+ + P I RP
Sbjct: 243 PKIPSMKMTDLAKALAPNT-PTKIIGIRP 270
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 18/134 (13%)
Query: 109 PLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSV--IVVDNFFTGRKENVMHHFGNPNF 166
P+G K V GG GFV S LV L+ +G +V V D + +++ +
Sbjct: 6 PIGKKTA----CVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDL 61
Query: 167 ELIRHDVVEPLLLE-----VDQIYHLACPASPVHYKFNPVKT--IKTNVVGTLNMLGLAK 219
++ R D+ + L E D ++H+ A+PVH+ + IK + G +N++
Sbjct: 62 KIFRADLTDELSFEAPIAGCDFVFHV---ATPVHFASEDPENDMIKPAIQGVVNVMKACT 118
Query: 220 RVGA--RFLLTSTS 231
R + R +LTS++
Sbjct: 119 RAKSVKRVILTSSA 132
>pdb|1BDB|A Chain A, Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase From
Pseudomonas Sp. Lb400
Length = 277
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
+K KG +++TGGA +G LVDR +A G V V+D
Sbjct: 1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLD 36
>pdb|2Y93|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain
B-356.
pdb|2Y93|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain
B-356.
pdb|2Y99|A Chain A, Crystal Structure Of
Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase
(Bphb)from Pandoraea Pnomenusa Strain B-356 Complex With
Co-Enzyme Nad
pdb|2Y99|B Chain B, Crystal Structure Of
Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase
(Bphb)from Pandoraea Pnomenusa Strain B-356 Complex With
Co-Enzyme Nad
pdb|3ZV3|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain B-
356 In Intermediate State Of Substrate Binding Loop
pdb|3ZV3|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain B-
356 In Intermediate State Of Substrate Binding Loop
pdb|3ZV4|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 In Apo Form At 1.8 Angstrom
pdb|3ZV4|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 In Apo Form At 1.8 Angstrom
pdb|3ZV5|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product 2,3-
Dihydroxybiphenyl
pdb|3ZV5|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product 2,3-
Dihydroxybiphenyl
pdb|3ZV6|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product Analog 4,4'-
Dihydroxybiphenyl
pdb|3ZV6|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product Analog 4,4'-
Dihydroxybiphenyl
Length = 281
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN 163
+K G ++TGGA +G LVDR +A G V V+D +E + H GN
Sbjct: 1 MKLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGN 52
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 131/338 (38%), Gaps = 57/338 (16%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFE----LIRHDVV 174
+ VTG +GF+GS LV RL+ RG +V T K+ V H P E L + D+
Sbjct: 8 VCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKK-VKHLLDLPKAETHLTLWKADLA 66
Query: 175 EPLLLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-----R 224
+ + ++H+A P K + IK + G MLG+ K A R
Sbjct: 67 DEGSFDEAIKGCTGVFHVATPMD-FESKDPENEVIKPTIEG---MLGIMKSCAAAKTVRR 122
Query: 225 FLLTSTSEVYGDPLQHPQ----KETYWGNVNPIGVRS----CYDEGKRTAETLTMDYHRG 276
+ TS++ +Q Q E+ W ++ + Y K AE Y +
Sbjct: 123 LVFTSSAGTVN--IQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKE 180
Query: 277 AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG--DGKQT-----RSFQF 329
++ F T P + VV F+ ++ +T G + R QF
Sbjct: 181 NNID------FITIIPTL------VVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQF 228
Query: 330 V--SDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETI-DPNAKIEFRPNTEDDP 386
V DL + L E + + + +L+LA++++E + N EF+ E+
Sbjct: 229 VHLDDLCNAHIYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDEN-- 286
Query: 387 HKRKPDISRAKEL--LGWEPKVSLRKGLPKMVKDFRQR 422
K +K+L LG+E K SL V R +
Sbjct: 287 --LKSVCFSSKKLTDLGFEFKYSLEDMFTGAVDTCRAK 322
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
R++VTG AG VGS + L V + D G E H +L V L
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEA---HEEIVACDLADAQAVHDL 60
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYG 235
+ + D I HL V +N + ++ N++G N+ A+ +G R + S++ G
Sbjct: 61 VKDCDGIIHLG--GVSVERPWNDI--LQANIIGAYNLYEAARNLGKPRIVFASSNHTIG 115
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 25/142 (17%)
Query: 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLI---------ARGDSVIV-----VDNFFT 151
KI + +G ++VTG GFV SH+V++L+ AR S + D +
Sbjct: 1 AKIDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYP 60
Query: 152 GRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGT 211
GR E + ++++ + ++ + H+A S K++ V + + GT
Sbjct: 61 GRFETAVVE------DMLKQGAYDEVIKGAAGVAHIASVVS-FSNKYDEV--VTPAIGGT 111
Query: 212 LNMLGLAKRVGA--RFLLTSTS 231
LN L A + RF+LTS++
Sbjct: 112 LNALRAAAATPSVKRFVLTSST 133
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 22/175 (12%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---- 173
R++VTG AG +G + +RL + + + D + + G PN E ++ D+
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLAD-------LSPLDPAG-PNEECVQCDLADAN 56
Query: 174 -VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 231
V ++ D I HL V F + ++ N++G N+ A+ G R + S++
Sbjct: 57 AVNAMVAGCDGIVHLG--GISVEKPFE--QILQGNIIGLYNLYEAARAHGQPRIVFASSN 112
Query: 232 EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
G +PQ E +V P Y K E L Y G E + RI
Sbjct: 113 HTIG---YYPQTERLGPDV-PARPDGLYGVSKCFGENLARMYFDKFGQETALVRI 163
>pdb|1SO8|A Chain A, Abeta-bound Human Abad Structure [also Known As
3-hydroxyacyl-coa Dehydrogenase Type Ii (type Ii Hadh),
Endoplasmic Reticulum- Associated Amyloid Beta-peptide
Binding Protein (erab)]
Length = 261
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
KGL V+TGGA +G +RL+ +G S +++D
Sbjct: 9 KGLVAVITGGASGLGLATAERLVGQGASAVLLD 41
>pdb|2O23|A Chain A, The Structure Of Wild-Type Human Hadh2
(17beta-Hydroxysteroid Dehydrogenase Type 10) Bound To
Nad+ At 1.2 A
pdb|2O23|B Chain B, The Structure Of Wild-Type Human Hadh2
(17beta-Hydroxysteroid Dehydrogenase Type 10) Bound To
Nad+ At 1.2 A
Length = 265
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
KGL V+TGGA +G +RL+ +G S +++D
Sbjct: 11 KGLVAVITGGASGLGLATAERLVGQGASAVLLD 43
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
+ KG ++ G AGF GS L +RL + G V++VD
Sbjct: 26 ESKGFDYLIVG-AGFAGSVLAERLASSGQRVLIVD 59
>pdb|1U7T|A Chain A, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
pdb|1U7T|B Chain B, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
pdb|1U7T|C Chain C, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
pdb|1U7T|D Chain D, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
Length = 261
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
KGL V+TGGA +G +RL+ +G S +++D
Sbjct: 9 KGLVAVITGGASGLGLATAERLVGQGASAVLLD 41
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
R++V GG GF+G+ L L ARG V +V
Sbjct: 2 RVLVGGGTGFIGTALTQLLNARGHEVTLVS 31
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSV 143
KI + +G ++VTG GFV SH+V++L+ G V
Sbjct: 1 AKIDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKV 38
>pdb|3SCE|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase With A Covalent Bond
Between The Ce1 Atom Of Tyr303 And The Cg Atom Of Gln360
(Tvnirb)
pdb|3SCE|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase With A Covalent Bond
Between The Ce1 Atom Of Tyr303 And The Cg Atom Of Gln360
(Tvnirb)
pdb|3S7W|A Chain A, Structure Of The Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase With An
Oxidized Gln360 In A Complex With Hydroxylamine
pdb|3S7W|B Chain B, Structure Of The Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase With An
Oxidized Gln360 In A Complex With Hydroxylamine
pdb|3OWM|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With
Hydroxylamine
pdb|3OWM|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With
Hydroxylamine
Length = 519
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 238 LQHPQKETYWGNVNPIGVRSCYD 260
LQHP+ ET+WG+V+ +C D
Sbjct: 355 LQHPEAETFWGSVHERNGVACAD 377
>pdb|3UU9|A Chain A, Structure Of The Free Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase
pdb|3UU9|B Chain B, Structure Of The Free Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase
Length = 520
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 238 LQHPQKETYWGNVNPIGVRSCYD 260
LQHP+ ET+WG+V+ +C D
Sbjct: 355 LQHPEAETFWGSVHERNGVACAD 377
>pdb|2OT4|A Chain A, Structure Of A Hexameric Multiheme C Nitrite Reductase
From The Extremophile Bacterium Thiolkalivibrio
Nitratireducens
pdb|2OT4|B Chain B, Structure Of A Hexameric Multiheme C Nitrite Reductase
From The Extremophile Bacterium Thiolkalivibrio
Nitratireducens
Length = 525
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 238 LQHPQKETYWGNVNPIGVRSCYD 260
LQHP+ ET+WG+V+ +C D
Sbjct: 359 LQHPEAETFWGSVHERNGVACAD 381
>pdb|3F29|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
pdb|3F29|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
pdb|2ZO5|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Azide
pdb|2ZO5|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Azide
pdb|3D1I|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
pdb|3D1I|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
pdb|3GM6|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Phosphate
pdb|3GM6|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Phosphate
pdb|3FO3|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Dithionite (Sulfite Complex)
pdb|3FO3|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Dithionite (Sulfite Complex)
pdb|3MMO|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Cyanide
pdb|3MMO|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Cyanide
pdb|3LG1|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Borohydride (In Complex With Sulfite)
pdb|3LG1|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Borohydride (In Complex With Sulfite)
pdb|3LGQ|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
(Modified Tyr-303)
pdb|3LGQ|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
(Modified Tyr-303)
Length = 525
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 238 LQHPQKETYWGNVNPIGVRSCYD 260
LQHP+ ET+WG+V+ +C D
Sbjct: 359 LQHPEAETFWGSVHERNGVACAD 381
>pdb|3RKH|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
(Full Occupancy)
pdb|3RKH|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
(Full Occupancy)
Length = 520
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 238 LQHPQKETYWGNVNPIGVRSCYD 260
LQHP+ ET+WG+V+ +C D
Sbjct: 355 LQHPEAETFWGSVHERNGVACAD 377
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 32/180 (17%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---- 173
R++VTG AG +G + +RL + + + D + + G PN E ++ D+
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLAD-------LSPLDPAG-PNEECVQCDLADAN 56
Query: 174 -VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 231
V ++ D I HL V F + ++ N++G N+ A+ G R + S++
Sbjct: 57 AVNAMVAGCDGIVHLG--GISVEKPFE--QILQGNIIGLYNLYEAARAHGQPRIVFASSN 112
Query: 232 EVYGDPLQHPQKETYWGNVNP-----IGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
G +PQ E +V GV C+ E L Y G E + RI
Sbjct: 113 HTIG---YYPQTERLGPDVPARPDGLAGVSKCF------GENLARMYFDKFGQETALVRI 163
>pdb|2P5D|A Chain A, Crystal Structure Of Mjecl36 From Methanocaldococcus
Jannaschii Dsm 2661
Length = 147
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 364 QVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKM 415
+VV E ++KI F+P T +P+++ P + KE+ +EP ++ ++ +PK+
Sbjct: 66 EVVSEVYKDSSKI-FKP-TPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKL 115
>pdb|1E3W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
Length = 261
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
KGL V+TGGA +G RL+ +G + +++D
Sbjct: 9 KGLVAVITGGASGLGLSTAKRLVGQGATAVLLD 41
>pdb|1E6W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
pdb|1E6W|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
pdb|1E6W|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
pdb|1E6W|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
Length = 260
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
KGL V+TGGA +G RL+ +G + +++D
Sbjct: 8 KGLVAVITGGASGLGLSTAKRLVGQGATAVLLD 40
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Acetate
pdb|1PJ6|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Folic Acid
pdb|1PJ7|A Chain A, Structure Of Dimethylglycine Oxidase Of Arthrobacter
Globiformis In Complex With Folinic Acid
Length = 830
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARG-DSVIVVDN 148
RIV+ G AG VG++L D L+ RG +++ V+D
Sbjct: 6 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQ 36
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant
Of Arthrobacter Globiformis In Complex With
Tetrahydrofolate
Length = 827
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARG-DSVIVVDN 148
RIV+ G AG VG++L D L+ RG +++ V+D
Sbjct: 3 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQ 33
>pdb|1E3S|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3S|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3S|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3S|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3W|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
pdb|1E3W|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
pdb|1E3W|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
Length = 261
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
KGL V+TGGA +G RL+ +G + +++D
Sbjct: 9 KGLVAVITGGASGLGLSTAKRLVGQGATAVLLD 41
>pdb|3ZF7|RR Chain r, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 374
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 311 RKEPLTVYGDGKQTRSFQ--FVSDLVE----GLMRLMEGEHVGPFNLGNPGEFTMLE 361
R+ P+ V D K TR+F+ F DL L+ L G HVG F + F L+
Sbjct: 203 RRGPMLVMPDNKGTRAFRNIFGLDLANVNSLNLLHLAPGGHVGRFIIWTKSAFEKLD 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,164,508
Number of Sequences: 62578
Number of extensions: 628870
Number of successful extensions: 1681
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1455
Number of HSP's gapped (non-prelim): 126
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)