BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013467
(442 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1
SV=1
Length = 420
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/306 (65%), Positives = 238/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ+++ + ++I+F +DDP KRKPDI +AK +LGWEP V L +GL K +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 418 DFRQRI 423
FR+ +
Sbjct: 390 YFRKEL 395
>sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2
SV=1
Length = 420
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/306 (65%), Positives = 238/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ+++ + ++I+F +DDP KRKPDI +AK +LGWEP V L +GL K +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 418 DFRQRI 423
FR+ +
Sbjct: 390 YFRKEL 395
>sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2
SV=1
Length = 420
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/306 (65%), Positives = 238/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ+++ + ++I+F +DDP KRKPDI +AK +LGWEP V L +GL K +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 418 DFRQRI 423
FR+ +
Sbjct: 390 YFRKEL 395
>sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1
PE=1 SV=1
Length = 420
Score = 422 bits (1084), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/306 (65%), Positives = 238/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ+++ + ++I+F +DDP KRKPDI +AK +LGWEP V L +GL K +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 418 DFRQRI 423
FR+ +
Sbjct: 390 YFRKEL 395
>sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2
SV=2
Length = 418
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/306 (64%), Positives = 236/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 88 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 147
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 148 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 207
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+G RM ++
Sbjct: 208 EVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGSRMHMN 267
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ E LTVYG G QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 268 DGRVVSNFILQALQGEALTVYGSGSQTRAFQYVSDLVNGLVSLMNSNISSPVNLGNPEEH 327
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ+++ + + I+F P +DDP +R+PDI +AK LLGWEP V L +GL K ++
Sbjct: 328 TILEFAQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGLNKTIQ 387
Query: 418 DFRQRI 423
F + +
Sbjct: 388 YFSREL 393
>sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1
PE=2 SV=1
Length = 421
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/306 (63%), Positives = 237/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 91 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 150
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 151 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 210
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 211 EVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 270
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ E LTVYG G+QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 271 DGRVVSNFILQALQGEQLTVYGSGEQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPQEH 330
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
++++ A+++++ + +I F +DDP +RKPDI +AK LLGWEP V L +GL K +
Sbjct: 331 SIVQFARLIKQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIH 390
Query: 418 DFRQRI 423
FR+ +
Sbjct: 391 YFRKEL 396
>sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0211 PE=3 SV=1
Length = 305
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
I+VTGGAGF+GSH+VD+LI VI++DN TG K N+ NP E + D+ + L
Sbjct: 2 ILVTGGAGFIGSHIVDKLIENNYDVIILDNLTTGNKNNI-----NPKAEFVNADIRDKDL 56
Query: 179 LE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS- 231
E V+ + H A + + NPV NV+GT+N+L + ++ ++ ++S
Sbjct: 57 DEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSG 116
Query: 232 -EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
VYG+P P E + PI S Y K E Y+R G+E I R N Y
Sbjct: 117 GAVYGEPNYLPVDENH-----PINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVY 171
Query: 291 GPRMC-IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG-LMRLMEGEHVGP 348
G R + V+S F+ + L+ + ++GDG QTR F +V D+ + LM L +
Sbjct: 172 GERQDPKGEAGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDVAKANLMALNWKNEI-- 229
Query: 349 FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSL 408
N+G E ++ EL +++ I + + E + ++ DI +A E LGW+P++ L
Sbjct: 230 VNIGTGKETSVNELFDIIKHEIGFRGEAIYDKPREGEVYRIYLDIKKA-ESLGWKPEIDL 288
Query: 409 RKGLPKMV 416
++G+ ++V
Sbjct: 289 KEGIKRVV 296
>sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044
/ CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2
Length = 320
Score = 128 bits (322), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 156/325 (48%), Gaps = 33/325 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGD--------SVIVVDNF-FTGRKENVMHHFGNPNFE 167
++I+VTGGAGF+GSH V LI+ GD V VVD + G N+ +P F
Sbjct: 1 MKILVTGGAGFIGSHFVTSLIS-GDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFS 59
Query: 168 LIRHDV-----VEPLLLEVDQIYHLACPASPVHYKFNPVKT---IKTNVVGTLNMLGLAK 219
+R D+ +E L+ D + H A + H + V + + +N+VGT +L A
Sbjct: 60 FVRGDICDEGLIEGLMARHDTVAHFA---AETHVDRSVVASGPFVASNLVGTQVLLDAAL 116
Query: 220 R--VGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA 277
R +G RFL ST EVYG W +P+ S Y K ++ L + YH+
Sbjct: 117 RHHIG-RFLHVSTDEVYGSI-----DTGSWAEGHPLAPNSPYAASKAGSDLLALAYHQTH 170
Query: 278 GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337
G++V + R N YGPR + +++ FV + L + VYGDG+ R + VSD GL
Sbjct: 171 GMDVVVTRCSNNYGPRQFPE--KMIPLFVTRLLDGLDVPVYGDGRNIRDWLHVSDHCRGL 228
Query: 338 MRLMEGEHVGP-FNLGNPGEFTMLELAQVVQETID-PNAKIEFRPNTEDDPHKRKPDISR 395
+ G +++G E T LEL +++ E P ++I F + + + D S+
Sbjct: 229 ALALGAGRAGEVYHIGGGWEATNLELTEILLEACGAPASRISFVTDRKGHDRRYSLDYSK 288
Query: 396 AKELLGWEPKVSLRKGLPKMVKDFR 420
LG+ P+V G+ + V +R
Sbjct: 289 IAGELGYRPRVDFTDGIAETVAWYR 313
>sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2
Length = 313
Score = 128 bits (322), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 155/316 (49%), Gaps = 15/316 (4%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+R +VTG AGF+GS LVDRL+A G V+ +D+ +GR EN+ + FE ++ D+V+
Sbjct: 1 MRTLVTGAAGFIGSTLVDRLLADGHGVVGLDDLSSGRAENLHSAENSDKFEFVKADIVDA 60
Query: 177 ----LLLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
LL E + I+HLA S +P NVVGT+ + A+ G R ++ ++
Sbjct: 61 DLTGLLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAARLAGVRKVVHTS 120
Query: 231 S--EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S VYG P +P E P+ S Y GK E Y ++ N
Sbjct: 121 SGGSVYGTPPAYPTSEDM-----PVNPASPYAAGKVAGEVYLNMYRNLYDLDCSHIAPAN 175
Query: 289 TYGPRMCI-DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG 347
YGPR + VV+ F L ++GDG TR + FV D+V+ +R G
Sbjct: 176 VYGPRQDPHGEAGVVAIFSEALLAGRTTKIFGDGSDTRDYVFVDDVVDAFVRAGGPAGGG 235
Query: 348 P-FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKV 406
FN+G E + EL + + + EF P D + + D +RA+E+LGW+P+V
Sbjct: 236 QRFNVGTGVETSTRELHTAIAGAVGAPDEPEFHPPRLGDLRRSRLDNTRAREVLGWQPQV 295
Query: 407 SLRKGLPKMVKDFRQR 422
+L +G+ K V+ FR +
Sbjct: 296 ALAEGIAKTVEFFRNK 311
>sp|O34886|YTCB_BACSU Uncharacterized UDP-glucose epimerase YtcB OS=Bacillus subtilis
(strain 168) GN=ytcB PE=3 SV=1
Length = 316
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 154/310 (49%), Gaps = 22/310 (7%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIA-RGDSVIVVDNF-----FTGRKENVMHHFGNPNFELIR 170
++I+VTG AGF+GSHL + L+ + +VI +D+F F+ + +N+ + F I+
Sbjct: 1 MKILVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFTFIK 60
Query: 171 HDVV----EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--R 224
+++ LL VD I+HLA N + + L L A R +
Sbjct: 61 ENLLTADLASLLEGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACREHSIQT 120
Query: 225 FLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIA 284
F+ STS VYG+ + T ++P GV K T E L Y + G+ + I
Sbjct: 121 FVFASTSSVYGEKQGKVSENTSLSPLSPYGVT------KLTGEKLCHVYKQSFGIPIVIL 174
Query: 285 RIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344
R F YGPR D + Q L+++PLT++GDG+Q+R F ++SD V+G+ ++
Sbjct: 175 RFFTVYGPRQRPD--MAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVKGITAVLGKP 232
Query: 345 HV--GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGW 402
H+ N+G ++L++ ++++ A + F +P DIS+AK+LL +
Sbjct: 233 HLIGETVNIGGAERASVLKVVSLIEDISGRKATLHFSDKIAGEPSNTWADISKAKQLLHY 292
Query: 403 EPKVSLRKGL 412
+P SL+ GL
Sbjct: 293 DPATSLKDGL 302
>sp|Q6MWV3|GALE_MYCTU UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis GN=galE1 PE=3
SV=1
Length = 314
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 146/325 (44%), Gaps = 33/325 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+R +VTG AGF+GS LVDRL+A G SV+ +DNF TGR N+ H N + D+V
Sbjct: 1 MRALVTGAAGFIGSTLVDRLLADGHSVVGLDNFATGRATNLEHLADNSAHVFVEADIVTA 60
Query: 177 LLLEV------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
L + + ++HLA +P NV+GT+ + A++ G R ++ ++
Sbjct: 61 DLHAILEQHRPEVVFHLAAQIDVRRSVADPQFDAAVNVIGTVRLAEAARQTGVRKIVHTS 120
Query: 231 S--EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S +YG P ++P ET P S Y GK E + G++ N
Sbjct: 121 SGGSIYGTPPEYPTPETA-----PTDPASPYAAGKVAGEIYLNTFRHLYGLDCSHIAPAN 175
Query: 289 TYGPRMCID-DGRVVSNFVAQALRKEPLTVYGDGKQT----------RSFQFVSDLVEGL 337
YGPR + VV+ F L +P V+GDG T +F VS V G
Sbjct: 176 VYGPRQDPHGEAGVVAIFAQALLSGKPTRVFGDGTNTRDYVFVDDVVDAFVRVSADVGGG 235
Query: 338 MRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAK 397
+R FN+G E + +L V + EF P D + DI A+
Sbjct: 236 LR---------FNIGTGKETSDRQLHSAVAAAVGGPDDPEFHPPRLGDLKRSCLDIGLAE 286
Query: 398 ELLGWEPKVSLRKGLPKMVKDFRQR 422
+LGW P++ L G+ + V+ FR +
Sbjct: 287 RVLGWRPQIELADGVRRTVEYFRHK 311
>sp|Q58455|Y1055_METJA Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1055 PE=3 SV=1
Length = 326
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 159/324 (49%), Gaps = 32/324 (9%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDS--VIVVDNF-------FTGRKENVMHHFGNPNFELI 169
I+VTG AGF+G HL L+ + VI +DN ++ ++ ++ N F +
Sbjct: 6 ILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYTFIKL 65
Query: 170 RH----DVVEPLL-LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A 223
D+VE L E+D I HL A + NP IK+N +GTLN+ A+R
Sbjct: 66 DFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARRFDIE 125
Query: 224 RFLLTSTSEVYGDPLQHPQKETYWGNVN-PIGVRSCYDEGKRTAETLTMDYHRGAGVEVR 282
+ + S+S VYG + P E V+ PI S Y KR+ E + YH G+++
Sbjct: 126 KVVYASSSSVYGGNRKIPFSED--DRVDKPI---SLYASTKRSNELMAHVYHHLYGIKMI 180
Query: 283 IARIFNTYG----PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLM 338
R F YG P M F L + + VY G R F ++SD+V+G++
Sbjct: 181 GLRFFTVYGEYGRPDMA------YFKFAKNILLGKEIEVYNYGNMERDFTYISDVVDGIL 234
Query: 339 RLMEGEH-VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAK 397
R ++ + FNLGN ++ +++++ ++ AK +F P + D + D+S+++
Sbjct: 235 RAIKKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQDGDVLRTYADLSKSE 294
Query: 398 ELLGWEPKVSLRKGLPKMVKDFRQ 421
+LLG++PKV++ +GL + F +
Sbjct: 295 KLLGYKPKVTIEEGLKRFCNWFLE 318
>sp|A2Z7B3|GME1_ORYSI GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica
GN=OsI_032456 PE=2 SV=1
Length = 378
Score = 115 bits (288), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 143/308 (46%), Gaps = 19/308 (6%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
LRI +TG GF+GSH+ RL + G +I D + E++ F L+ V++
Sbjct: 30 LRISITGAGGFIGSHIARRLKSEGHYIIASD---WKKNEHMTEDMFCHEFHLVDLRVMDN 86
Query: 177 LLL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 231
L VD +++LA + + + N + N + + NML A+ G RF S++
Sbjct: 87 CLKVTNSVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSA 146
Query: 232 EVYGDPLQHPQ----KETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
+Y + Q KE+ + P + Y K E L Y + G+E R+ R
Sbjct: 147 CIYPEFKQLETNVSLKES---DAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFH 203
Query: 288 NTYGPRMCIDDGR--VVSNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344
N YGP GR + F +A + ++GDG QTRSF F+ + VEG++RL + +
Sbjct: 204 NIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 263
Query: 345 HVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEP 404
P N+G+ +M E+A+++ D I P E R D + KE LGW P
Sbjct: 264 FREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPGPE-GVRGRNSDNTLIKEKLGWAP 322
Query: 405 KVSLRKGL 412
+ L+ GL
Sbjct: 323 TMKLKDGL 330
>sp|B0RVL0|RMLB_XANCB dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain B100) GN=rfbB PE=3 SV=1
Length = 351
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 147/331 (44%), Gaps = 45/331 (13%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVEPLL 178
+VTGGAGF+G + V ++RG V+ +D + G + GN + ++ D+ + L
Sbjct: 5 LVTGGAGFIGGNFVLEAVSRGIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGAL 64
Query: 179 L-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGL----------AKRV 221
+ + D + + A + P I+TNVVGTL +L +R
Sbjct: 65 VTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRD 124
Query: 222 GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEV 281
RFL ST EVYG L K T P S Y K ++ L +H G+ V
Sbjct: 125 AFRFLHVSTDEVYG-TLGETGKFT---ETTPYAPNSPYSASKAASDHLVRAFHHTYGLPV 180
Query: 282 RIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLM 341
N YGP + +++ +A+AL EPL VYGDGKQ R + FVSD E + ++
Sbjct: 181 LTTNCSNNYGPYHFPE--KLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVL 238
Query: 342 EGEHVGP-FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDP-------------H 387
VG +N+G E +E+ Q + +D + RP + P H
Sbjct: 239 AKGRVGETYNVGGNSERQNIEVVQAICALLD-----QHRPREDGKPRESQIAYVTDRPGH 293
Query: 388 KRK--PDISRAKELLGWEPKVSLRKGLPKMV 416
R+ D S+ K+ LGWEP + +G+ V
Sbjct: 294 DRRYAIDASKLKDELGWEPAYTFEQGIALTV 324
>sp|A3C4S4|GME1_ORYSJ GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica
GN=GME-1 PE=1 SV=1
Length = 378
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 143/308 (46%), Gaps = 19/308 (6%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
LRI +TG GF+GSH+ RL + G +I D + E++ F L+ V++
Sbjct: 30 LRISITGAGGFIGSHIARRLKSEGHYIIASD---WKKNEHMTEDMFCHEFHLVDLRVMDN 86
Query: 177 LLL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 231
L VD +++LA + + + N + N + + NML A+ G RF S++
Sbjct: 87 CLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSA 146
Query: 232 EVYGDPLQHPQ----KETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
+Y + Q KE+ + P + Y K E L Y + G+E R+ R
Sbjct: 147 CIYPEFKQLETNVSLKES---DAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFH 203
Query: 288 NTYGPRMCIDDGR--VVSNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344
N YGP GR + F +A + ++GDG QTRSF F+ + VEG++RL + +
Sbjct: 204 NIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 263
Query: 345 HVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEP 404
P N+G+ +M E+A+++ D I P E R D + KE LGW P
Sbjct: 264 FREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPGPE-GVRGRNSDNTLIKEKLGWAP 322
Query: 405 KVSLRKGL 412
+ L+ GL
Sbjct: 323 TMKLKDGL 330
>sp|Q2R1V8|GME2_ORYSJ GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica
GN=GME-2 PE=2 SV=2
Length = 371
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 142/309 (45%), Gaps = 21/309 (6%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
LRI +TG GF+ SH+ RL + G +I D + E++ F L+ V++
Sbjct: 23 LRISITGAGGFIASHIARRLKSEGHYIIASD---WKKNEHMTEDMFCHEFHLVDLRVMDN 79
Query: 177 LL---LEVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 231
L VD +++LA + + + N + N + + NML A+ G RF S++
Sbjct: 80 CLKVTTGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSA 139
Query: 232 EVYG-----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
+Y D + ++ W P + Y K E L Y + G+E R+ R
Sbjct: 140 CIYPEFKQLDTVVSLKESDAW----PAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRF 195
Query: 287 FNTYGPRMCIDDGR--VVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343
N YGP GR + F +AL + ++GDG QTRSF F+ + VEG++RL +
Sbjct: 196 HNIYGPFGTWKGGREKAPAAFCRKALTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKS 255
Query: 344 EHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWE 403
+ P N+G+ +M E+A++V + I P E R D + KE LGW
Sbjct: 256 DFREPVNIGSDEMVSMNEMAEIVLSFENKQLPIHHIPGPE-GVRGRNSDNTLIKEKLGWA 314
Query: 404 PKVSLRKGL 412
P + L+ GL
Sbjct: 315 PTMRLKDGL 323
>sp|P0C7J0|RMLB_XANCP dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rfbB PE=3 SV=1
Length = 351
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 147/331 (44%), Gaps = 45/331 (13%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVEPLL 178
+VTG AGF+G + V ++RG V+ +D + G + GN + ++ D+ + L
Sbjct: 5 LVTGRAGFIGGNFVLEAVSRGIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGAL 64
Query: 179 L-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGL----------AKRV 221
+ + D + + A + P I+TNVVGTL +L +R
Sbjct: 65 VTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRD 124
Query: 222 GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEV 281
RFL ST EVYG L K T P S Y K ++ L +H G+ V
Sbjct: 125 AFRFLHVSTDEVYG-TLGETGKFT---ETTPYAPNSPYSASKAASDHLVRAFHHTYGLPV 180
Query: 282 RIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLM 341
N YGP + +++ +A+AL EPL VYGDGKQ R + FVSD E + ++
Sbjct: 181 LTTNCSNNYGPYHFPE--KLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVL 238
Query: 342 EGEHVGP-FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDP-------------H 387
VG +N+G E +E+ Q + +D + RP + P H
Sbjct: 239 AKGRVGETYNVGGNSERQNIEVVQAICALLD-----QHRPREDGKPRESQIAYVTDRPGH 293
Query: 388 KRK--PDISRAKELLGWEPKVSLRKGLPKMV 416
R+ D S+ K+ LGWEP + +G+ + V
Sbjct: 294 DRRYAIDASKLKDELGWEPAYTFEQGIAQTV 324
>sp|Q8VDR7|TGDS_MOUSE dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=2
Length = 355
Score = 112 bits (280), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 154/337 (45%), Gaps = 26/337 (7%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVV--DNF-FTGRKENVMHHFGNPNFELIRHDVV 174
R++VTGGAGF+ SH++ L+ ++V D + +N+ N++ I+ D+
Sbjct: 19 RVLVTGGAGFIASHVIVSLVEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNYKFIQGDIC 78
Query: 175 EP----LLLEVDQIYHLACPASPVHYKFNPVKTIK---TNVVGTLNMLGLAKRVGA-RFL 226
+ LL EV++I + A+ H + V+ + NV GT ++ A G +F+
Sbjct: 79 DSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVNAAYEAGVEKFI 138
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
ST EVYG L E+ +P + Y K AE Y V I R
Sbjct: 139 YVSTDEVYGGSLDQEFDES-----SPKQPTNPYASSKAAAECFVQSYWERYKFPVVITRS 193
Query: 287 FNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR-LMEGEH 345
N YGP + +V+ F++ ++G G Q R+F + +D+VE + L +GE
Sbjct: 194 SNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGSGLQRRNFLYAADVVEAFLTVLTKGEP 251
Query: 346 VGPFNLGNPGEFTMLELA----QVVQETIDPNAKIEFRPNTEDDPHK--RKPDISRAKEL 399
+N+G E ++++LA Q+++ET + + D PH R P S
Sbjct: 252 GEIYNIGTNFEMSVVQLAKELIQLIKETNSESETESWVDYVSDRPHNDMRYPMKSEKIHS 311
Query: 400 LGWEPKVSLRKGLPKMVKDFRQRIFGDHKEGGAGATP 436
LGW+PKV +G+ K V+ +R+ F + K P
Sbjct: 312 LGWKPKVPWEEGIKKTVEWYRKN-FHNWKNAEKALEP 347
>sp|Q93VR3|GME_ARATH GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1
SV=1
Length = 377
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 142/308 (46%), Gaps = 14/308 (4%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ L+I +TG GF+ SH+ RL G VI D + E++ F L+ V+
Sbjct: 26 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 82
Query: 175 EPLLL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 229
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 83 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 142
Query: 230 TSEVYGD--PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++ +Y + L+ + P + Y K E L Y++ G+E RI R
Sbjct: 143 SACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFH 202
Query: 288 NTYGPRMCIDDGR--VVSNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344
N YGP GR + F +A + ++GDG QTRSF F+ + VEG++RL + +
Sbjct: 203 NIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 262
Query: 345 HVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEP 404
P N+G+ +M E+A++V + I P E R D + KE LGW P
Sbjct: 263 FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKEKLGWAP 321
Query: 405 KVSLRKGL 412
+ L++GL
Sbjct: 322 NMRLKEGL 329
>sp|Q9LPG6|RHM2_ARATH Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana
GN=RHM2 PE=1 SV=1
Length = 667
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 153/320 (47%), Gaps = 24/320 (7%)
Query: 119 IVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVE 175
I++TG AGF+ SH+ +RLI ++V+D + +N+ F +PNF+ ++ D+
Sbjct: 11 ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSDLKNLDPSFSSPNFKFVKGDIAS 70
Query: 176 PLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFL 226
L+ +D I H A + N + K N+ GT +L K G RF+
Sbjct: 71 DDLVNYLLITENIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 130
Query: 227 LTSTSEVYGDPLQHPQKETYWGN--VNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIA 284
ST EVYG+ ++ GN + + + Y K AE L M Y R G+ V
Sbjct: 131 HVSTDEVYGET----DEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 186
Query: 285 RIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL-MRLMEG 343
R N YGP + +++ F+ A+ +PL ++GDG RS+ + D+ E + L +G
Sbjct: 187 RGNNVYGPNQFPE--KMIPKFILLAMSGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKG 244
Query: 344 EHVGPFNLGNPGEFTMLELAQVVQETI--DPNAKIEFRPNTEDDPHKRKPDISRAKELLG 401
E +N+G E ++++A+ + + DP + I+F N + + D + K+ LG
Sbjct: 245 EIGHVYNVGTKRERRVIDVARDICKLFGKDPESSIQFVENRPFNDQRYFLDDQKLKK-LG 303
Query: 402 WEPKVSLRKGLPKMVKDFRQ 421
W+ + + GL K + + Q
Sbjct: 304 WQERTNWEDGLKKTMDWYTQ 323
>sp|Q9SYM5|RHM1_ARATH Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana
GN=RHM1 PE=1 SV=1
Length = 669
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 149/322 (46%), Gaps = 28/322 (8%)
Query: 119 IVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVE 175
I++TG AGF+ SH+ +RLI ++V+D + +N+ +PNF+ ++ D+
Sbjct: 9 ILITGAAGFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLNPSKHSPNFKFVKGDIAS 68
Query: 176 PLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFL 226
L+ +D I H A + N + K N+ GT +L K G RF+
Sbjct: 69 ADLVNHLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
Query: 227 LTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVR 282
ST EVYG D L + + NP Y K AE L M Y R G+ V
Sbjct: 129 HVSTDEVYGETDEDALVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYGLPVI 182
Query: 283 IARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME 342
R N YGP + +++ F+ A+R + L ++GDG RS+ + D+ E ++
Sbjct: 183 TTRGNNVYGPNQFPE--KLIPKFILLAMRGQVLPIHGDGSNVRSYLYCEDVAEAFEVVLH 240
Query: 343 GEHVGP-FNLGNPGEFTMLELAQVVQE--TIDPNAKIEFRPNTEDDPHKRKPDISRAKEL 399
VG +N+G E + ++A+ + + +DP A I+F N + + D + K+
Sbjct: 241 KGEVGHVYNIGTKKERRVNDVAKDICKLFNMDPEANIKFVDNRPFNDQRYFLDDQKLKK- 299
Query: 400 LGWEPKVSLRKGLPKMVKDFRQ 421
LGW + + +GL K + + Q
Sbjct: 300 LGWSERTTWEEGLKKTMDWYTQ 321
Score = 35.4 bits (80), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 83/218 (38%), Gaps = 33/218 (15%)
Query: 201 VKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKE--TYWGNVNPIGVRSC 258
+TI+ NV GTL + + + G + +T ++ +HP+ + P S
Sbjct: 456 TETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSF 515
Query: 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY 318
Y + K E L +Y + VR+ + PR NF+ + R +
Sbjct: 516 YSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPR----------NFITKISRYNKVV-- 563
Query: 319 GDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAK--- 375
S + +L+ + + + G +N NPG + E+ ++ ++ I+P K
Sbjct: 564 ---NIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYINPEFKWAN 620
Query: 376 ----------IEFRPNTEDDPHKRK---PDISRAKELL 400
+ R N E D K K P++ KE L
Sbjct: 621 FTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESL 658
>sp|P29782|RMLB_STRGR dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=1
SV=1
Length = 328
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 144/315 (45%), Gaps = 19/315 (6%)
Query: 119 IVVTGGAGFVGSHLVDRLIARG---DSVIVVDNFFT--GRKENVMHHFGNPNFELIRHDV 173
++VTG AGF+GS V L+ G D V+ + T G +N+ G+P + R D+
Sbjct: 5 LLVTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGHPRYRFERGDI 64
Query: 174 VEP----LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLT 228
+ ++ DQ+ HLA + + ++TNV GT +L A R G A F+
Sbjct: 65 CDAPGRRVMAGQDQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHGVASFVQV 124
Query: 229 STSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
ST EVYG L+H W P+ S Y K + + L + +H G++VR+ R N
Sbjct: 125 STDEVYGS-LEHGS----WTEDEPLRPNSPYSASKASGDLLALAHHVSHGLDVRVTRCSN 179
Query: 289 TYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP 348
YGPR + +++ F+ + + +YGDG R + V D V G+ + G
Sbjct: 180 NYGPRQFPE--KLIPRFITLLMDGHRVPLYGDGLNVREWLHVDDHVRGIEAVRTRGRAGR 237
Query: 349 -FNLGNPGEFTMLELAQVVQETIDPN-AKIEFRPNTEDDPHKRKPDISRAKELLGWEPKV 406
+N+G + EL ++ E + +E+ + + + D +R + LG+ P V
Sbjct: 238 VYNIGGGATLSNKELVGLLLEAAGADWGSVEYVEDRKGHDRRYAVDSTRIQRELGFAPAV 297
Query: 407 SLRKGLPKMVKDFRQ 421
L GL V + +
Sbjct: 298 DLADGLAATVAWYHK 312
>sp|Q9LH76|RHM3_ARATH Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana
GN=RHM3 PE=1 SV=1
Length = 664
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 153/322 (47%), Gaps = 28/322 (8%)
Query: 119 IVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVE 175
I++TG AGF+ SH+ +RL+ ++V+D + +N+ +PNF+ ++ D+
Sbjct: 9 ILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIAS 68
Query: 176 PLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFL 226
L+ E+D I H A + N + K N+ GT +L K G RF+
Sbjct: 69 ADLVNYLLITEEIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
Query: 227 LTSTSEVYGDPLQHPQKETYWGN----VNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVR 282
ST EVYG+ + + + NP Y K AE L M Y R G+ V
Sbjct: 129 HVSTDEVYGETDEDASVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYGLPVI 182
Query: 283 IARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL-MRLM 341
R N YGP + +++ F+ A+ +PL ++GDG RS+ + D+ E + L
Sbjct: 183 TTRGNNVYGPNQFPE--KLIPKFILLAMNGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLH 240
Query: 342 EGEHVGPFNLGNPGEFTMLELAQVVQET--IDPNAKIEFRPNTEDDPHKRKPDISRAKEL 399
+GE +N+G E ++++A + + IDP++ I++ N + + D + K+
Sbjct: 241 KGEVNHVYNIGTTRERRVIDVANDISKLFGIDPDSTIQYVENRPFNDQRYFLDDQKLKK- 299
Query: 400 LGWEPKVSLRKGLPKMVKDFRQ 421
LGW + + +GL K ++ + +
Sbjct: 300 LGWCERTNWEEGLRKTMEWYTE 321
>sp|A6QLW2|TGDS_BOVIN dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1
Length = 355
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 154/337 (45%), Gaps = 26/337 (7%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVV--DNF-FTGRKENVMHHFGNPNFELIRHDVV 174
R++VTGGAGF+ SH++ L+ + +++ D + +N+ N++ I+ D+
Sbjct: 19 RVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDIC 78
Query: 175 EP----LLLEVDQIYHLACPASPVHYKFNPVKTIK---TNVVGTLNMLGLAKRVGA-RFL 226
+ LL E ++I + A+ H + V+ + NV GT ++ A +F+
Sbjct: 79 DSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKFI 138
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
ST EVYG L E+ +P + Y K AE Y V I R
Sbjct: 139 YVSTDEVYGGSLDKEFDES-----SPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRS 193
Query: 287 FNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV 346
N YGP + +V+ F++ ++G G QTR+F + +D+VE + +++
Sbjct: 194 SNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGTGLQTRNFLYATDVVEAFLTVLKKGKP 251
Query: 347 GP-FNLGNPGEFTMLELA----QVVQETIDPNAKIEFRPNTEDDPHK--RKPDISRAKEL 399
G +N+G E ++L+LA Q+++ET + + +D P R P S
Sbjct: 252 GEIYNIGTNFEMSVLQLAKELIQLIKETNSESEMENWVDYVDDRPTNDMRYPMKSEKIHG 311
Query: 400 LGWEPKVSLRKGLPKMVKDFRQRIFGDHKEGGAGATP 436
LGW PKV ++G+ K ++ +R+ F + K P
Sbjct: 312 LGWRPKVPWKEGIKKTIEWYREN-FHNWKNAEKALEP 347
>sp|B4ETL7|ARNA_PROMH Bifunctional polymyxin resistance protein ArnA OS=Proteus mirabilis
(strain HI4320) GN=arnA PE=3 SV=1
Length = 660
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/355 (26%), Positives = 156/355 (43%), Gaps = 44/355 (12%)
Query: 102 VNSGGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF 161
V G K +KR+ R+++ G GF+G+HL +RL+ G+ I + + E +
Sbjct: 302 VRVGPKATAQVKRRQ-RVLILGVNGFIGNHLTERLLKDGNYDIYGMDIGSSAIERFI--- 357
Query: 162 GNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNML 215
GNP F I DV +E + + D I L A+P+ Y NP++ + + L ++
Sbjct: 358 GNPRFHFIEGDVSIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIV 417
Query: 216 GLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGN----VNPIG-VRSCYDEGKRTAETLT 270
+ R + STSEVYG KE N V PI R Y K+ + +
Sbjct: 418 RYCVKYNKRIIFPSTSEVYG---MCDDKEFDEDNSRLIVGPINKQRWIYSVSKQLLDRVI 474
Query: 271 MDYHRGAGVEVRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQT 324
Y G++ + R FN GPR+ I R ++ + + P+ + G+Q
Sbjct: 475 WAYGAKEGLKFTLFRPFNWMGPRLDNLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQK 534
Query: 325 RSFQFVSDLVEGLMRLMEGEHVGP----FNLGNP-GEFTMLELAQVVQETIDPN------ 373
R F ++D +E L R++E N+GNP E ++ ELA+++ + + +
Sbjct: 535 RCFTDINDGIEALFRIIENRDNKCDGQIINIGNPTNEASIRELAEMLLDCFEKHELRGHF 594
Query: 374 ------AKIE---FRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419
KIE + D RKP I A+ LL W+P + R+ + + + F
Sbjct: 595 PPFAGFKKIESSSYYGKGYQDVEHRKPSIKNAERLLDWKPTIETRQTVEETLDFF 649
>sp|P44914|RMLB_HAEIN dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rffG PE=3 SV=1
Length = 338
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 153/336 (45%), Gaps = 43/336 (12%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVV 174
+ I+VTGG+GF+GS L+ +I D VI +D ++ + NP + + D+
Sbjct: 2 MNILVTGGSGFIGSALIRYIINHTQDFVINIDKLTYAANQSALREVENNPRYVFEKVDIC 61
Query: 175 EPLLLEV-------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK-------- 219
+ ++E D + HLA + ++TN+VGT +L +AK
Sbjct: 62 DLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHTLDE 121
Query: 220 --RVGARFLLTSTSEVYGD-PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG 276
+ RF ST EVYGD L P + +P S Y K + L +HR
Sbjct: 122 AKKTTFRFHHISTDEVYGDLSLSEPA----FTEQSPYHPSSPYSASKAASNHLVQAWHRT 177
Query: 277 AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 336
G+ V I N YG + +++ ++ A+ +PL +YGDG+Q R + FV D V+
Sbjct: 178 YGLPVIITNSSNNYGAYQHAE--KLIPLMISNAVMGKPLPIYGDGQQIRDWLFVEDHVQA 235
Query: 337 LMRLMEGEHVGP-FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPN-----------TED 384
++ VG +N+G E T LE+ + + + ++ A +PN +D
Sbjct: 236 SYLVLTKGRVGENYNIGGNCEKTNLEVVKRICQLLEELAP--SKPNHIKYYEDLMTFVKD 293
Query: 385 DP-H--KRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
P H + D S+ LGW+P+++ +GL + VK
Sbjct: 294 RPGHDVRYSLDCSKIHAELGWQPQITFEQGLRQTVK 329
>sp|O95455|TGDS_HUMAN dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=2 SV=1
Length = 350
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 149/324 (45%), Gaps = 25/324 (7%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVV--DNF-FTGRKENVMHHFGNPNFELIRHDVV 174
R++VTGGAGF+ SH++ L+ + +++ D + +N+ N++ I+ D+
Sbjct: 19 RVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDIC 78
Query: 175 EP----LLLEVDQIYHLACPASPVHYKFNPVKTIK---TNVVGTLNMLGLAKRVGA-RFL 226
+ LL E ++I + A+ H + V+ + NV GT ++ A +F+
Sbjct: 79 DSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKFI 138
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
ST EVYG L E+ +P + Y K AE Y V I R
Sbjct: 139 YVSTDEVYGGSLDKEFDES-----SPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRS 193
Query: 287 FNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV 346
N YGP + +V+ F++ ++G G QTR+F + +D+VE + +++
Sbjct: 194 SNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGKP 251
Query: 347 GP-FNLGNPGEFTMLELA----QVVQETIDPNAKIEFRPNTEDDPHK--RKPDISRAKEL 399
G +N+G E ++++LA Q+++ET + + D P R P S
Sbjct: 252 GEIYNIGTNFEMSVVQLAKELIQLIKETNSESEMENWVDYVNDRPTNDMRYPMKSEKIHG 311
Query: 400 LGWEPKVSLRKGLPKMVKDFRQRI 423
LGW PKV ++G+ K ++ +R+
Sbjct: 312 LGWRPKVPWKEGIKKTIEWYRENF 335
>sp|P37761|RMLB_NEIGO dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3
SV=1
Length = 346
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 146/331 (44%), Gaps = 37/331 (11%)
Query: 119 IVVTGGAGFVGSHLVDRLIARG-DSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVEP 176
I+VTGGAGF+GS +V +I DSV+ +D + G E++ NP + + D+ +
Sbjct: 9 ILVTGGAGFIGSAVVRHIIQNTRDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDR 68
Query: 177 LLLEV-------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA----------K 219
L+ D + HLA + + + I+TN+VGT ++L A K
Sbjct: 69 AELDRVFAQYRPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARAYWQQMPSEK 128
Query: 220 RVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
R RF ST EVYGD H + + P S Y K A+ L + R +
Sbjct: 129 REAFRFHHISTDEVYGD--LHGTDDLF-TETTPYAPSSPYSASKAAADHLVRAWQRTYRL 185
Query: 280 EVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR 339
++ N YGPR + +++ + AL +PL VYGDG Q R + FV D L +
Sbjct: 186 PSIVSNCSNNYGPRQFPE--KLIPLMILNALSGKPLPVYGDGAQIRDWLFVEDHARALYQ 243
Query: 340 LMEGEHVGP-FNLGNPGEFTMLELAQVVQETIDPNAK------------IEFRPNTEDDP 386
++ VG +N+G E T LE+ + + ++ A I F +
Sbjct: 244 VVTEGVVGETYNIGGHNEKTNLEVVKTICALLEELAPEKPAGVARYEDLITFVQDRPGHD 303
Query: 387 HKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
+ D ++ + LGW P + GL K V+
Sbjct: 304 ARYAVDAAKIRRDLGWLPLETFESGLRKTVQ 334
>sp|O06485|YFNG_BACSU Putative sugar dehydratase/epimerase YfnG OS=Bacillus subtilis
(strain 168) GN=yfnG PE=3 SV=2
Length = 322
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 151/326 (46%), Gaps = 31/326 (9%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSV--IVVD-----NFFTG---RKENVMHHFGNP 164
K + VTG G +GS+LV LI +G +V +V D N + G +K N++
Sbjct: 5 KNKNVFVTGCTGLLGSYLVKELIEQGANVTGLVRDHVPQSNLYQGEHIKKMNIVRG---- 60
Query: 165 NFELIRHDVVEPLL--LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR-- 220
L V+E L E+D ++HLA A NP+ T + N++GT N+L ++
Sbjct: 61 --SLEDLAVIERALGEYEIDTVFHLAAQAIVGVANRNPISTFEANILGTWNILEACRKHP 118
Query: 221 VGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVE 280
+ R ++ S+ + YGD P E P+ + YD K A+ ++ Y G+
Sbjct: 119 LIKRVIVASSDKAYGDQENLPYDENM-----PLQGKHPYDVSKSCADLISHTYFHTYGLP 173
Query: 281 VRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRL 340
V I R N YG ++ R++ + L E + DG R + ++ D V+ + L
Sbjct: 174 VCITRCGNLYGGGD-LNFNRIIPQTIQLVLNGEAPEIRSDGTFVRDYFYIEDAVQAYLLL 232
Query: 341 ---MEGEHVG--PFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISR 395
ME ++ FN N + T+LEL + + + ++ N K + ++ + +
Sbjct: 233 AEKMEENNLAGEAFNFSNEIQLTVLELVEKILKKMNSNLKPKVLNQGSNEIKHQYLSAEK 292
Query: 396 AKELLGWEPKVSLRKGLPKMVKDFRQ 421
A++LL W P ++ +GL K ++ + +
Sbjct: 293 ARKLLNWTPAYTIDEGLEKTIEWYTE 318
>sp|A0KGY6|ARNA_AERHH Bifunctional polymyxin resistance protein ArnA OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=arnA PE=3 SV=1
Length = 663
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 158/352 (44%), Gaps = 38/352 (10%)
Query: 105 GGKIPLGLKRKGL-RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN 163
G K L++ L R+++ G GF+G+HL +RL+ G + + + + + G+
Sbjct: 305 GAKASNALRKARLTRVLILGVNGFIGNHLTERLLQDGGYEVYGLDIGSSAVDRFI---GH 361
Query: 164 PNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGL 217
PNF + D+ +E + + D I L A+P+ Y NP++ + + L ++
Sbjct: 362 PNFHFVEGDISIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRY 421
Query: 218 AKRVGARFLLTSTSEVYGDPLQHP-QKETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHR 275
+ R + STSEVYG H +++ V PI R Y K+ + + Y +
Sbjct: 422 CVKYHKRIIFPSTSEVYGMCDDHSFDEDSSRLIVGPINKQRWIYSVSKQLLDRVIWAYGK 481
Query: 276 GAGVEVRIARIFNTYGPRM-CIDDGRV-----VSNFVAQALRKEPLTVYGDGKQTRSFQF 329
G+ + R FN GPR+ +D R+ ++ + + P+ + G Q R F
Sbjct: 482 KEGLNFTLFRPFNWMGPRLDSLDSARIGSSRAITQLILNLVDGTPIQLVDGGAQKRCFTD 541
Query: 330 VSDLVEGLMRLMEGEHVGP----FNLGNP-GEFTMLELAQV---------VQETIDPNAK 375
+ D +E L R++E + N+GNP E ++ ++A++ +++ P A
Sbjct: 542 IEDGIEALFRIIENKENRCDGQIINIGNPDNEASIQQMAEILLAKFEAHPLRDHFPPFAG 601
Query: 376 IE------FRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421
+ F + D R+P I+ A+ LL WEP + + + + + F Q
Sbjct: 602 FKLVESKSFYGDGYQDVSHRRPSIANARRLLDWEPTIEMEETIGNTLDFFLQ 653
>sp|Q2NRV7|ARNA_SODGM Bifunctional polymyxin resistance protein ArnA OS=Sodalis
glossinidius (strain morsitans) GN=arnA PE=3 SV=1
Length = 660
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 153/351 (43%), Gaps = 41/351 (11%)
Query: 109 PLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFEL 168
PL ++ R+++ G GF+G+HL +RL+ G+ I + T + + NP F
Sbjct: 308 PLVSHKRRTRVLILGVNGFIGNHLTERLLRDGNYEIYGLDIGT---DAISRFMVNPLFHF 364
Query: 169 IRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
+ D+ +E + + D + L A+P+ Y NP++ + + L ++ +
Sbjct: 365 VEGDISIHSEWIEYHIKKCDIVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRHCVKYQ 424
Query: 223 ARFLLTSTSEVYG---DPLQHPQKETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGAG 278
R + STSEVYG DP+ + V PI R Y K+ + + Y G
Sbjct: 425 KRIIFPSTSEVYGMCTDPVFDEDDSSLI--VGPINKQRWIYSVSKQLLDRVLWAYGEKEG 482
Query: 279 VEVRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332
+ + R FN GPR+ I R ++ + + + + G Q R F +SD
Sbjct: 483 LRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSHIKLVDGGAQKRCFTDISD 542
Query: 333 LVEGLMRLMEGEHVGP----FNLGNP-GEFTMLELAQVVQETIDPNAKIEFRP------N 381
+E L R++E + N+GNP E ++ +LA+++ + + + + P +
Sbjct: 543 GIEALFRIIENKDNNCDGQIINIGNPDNEASIRQLAELLLASFERHPLRQHFPPFAGFRD 602
Query: 382 TED---------DPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423
E D RKP I AK LLGW P V + + + + + F Q +
Sbjct: 603 VESSSYYGKGYQDVEHRKPSIRNAKRLLGWAPSVPMAQTIDETLDFFLQTV 653
>sp|Q7N3Q7|ARNA_PHOLL Bifunctional polymyxin resistance protein ArnA OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=arnA PE=3
SV=1
Length = 660
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 150/337 (44%), Gaps = 39/337 (11%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---- 173
R+++ G GF+G+HL +RL+ G+ I + + E + NP F I D+
Sbjct: 317 RVLILGVNGFIGNHLTERLLRDGNYDIYGMDIGSSAIERFI---SNPRFHFIEGDINIHT 373
Query: 174 --VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231
+E + + D + L A+P+ Y NP++ + + L ++ + R + STS
Sbjct: 374 EWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTS 433
Query: 232 EVYG--DPLQHPQKETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
EVYG D + + ++ V PI R Y K+ + + Y G++ + R FN
Sbjct: 434 EVYGMCDDKEFDEDDSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLKFTLFRPFN 492
Query: 289 TYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME 342
GPR+ I R ++ + + P+ + G+Q R F ++D +E L R++E
Sbjct: 493 WMGPRLDNLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCFTDINDGIEALFRIIE 552
Query: 343 GEH----VGPFNLGNP-GEFTMLELAQVVQETI-DPNAKIEFRP--------------NT 382
N+GNP E ++ +LA+++ ++ D + F P
Sbjct: 553 NREGLCDGQIINIGNPTNEASIRQLAEILLDSFEDHELRDHFPPFAGFKKVESGSYYGKG 612
Query: 383 EDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419
D RKP I A+ LL W+P + +++ + + + F
Sbjct: 613 YQDVEHRKPSIKNAERLLDWKPTIDMKQTINETLDFF 649
>sp|A4SQW9|ARNA_AERS4 Bifunctional polymyxin resistance protein ArnA OS=Aeromonas
salmonicida (strain A449) GN=arnA PE=3 SV=1
Length = 663
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 156/352 (44%), Gaps = 38/352 (10%)
Query: 105 GGKIPLGLKRKGL-RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN 163
G K L+++ L R+++ G GF+G+HL +RL+ G I + + H
Sbjct: 305 GAKASSALRKERLTRVLILGVNGFIGNHLTERLLKDGRYEIYGLDISASALGRFIDH--- 361
Query: 164 PNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGL 217
P+F + D+ +E + + D I L A+P+ Y NP++ + + L ++
Sbjct: 362 PHFHFVEGDISIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRY 421
Query: 218 AKRVGARFLLTSTSEVYGDPLQHP-QKETYWGNVNPI-GVRSCYDEGKRTAETLTMDYHR 275
+ R + STSEVYG H ++ V PI R Y K+ + + Y +
Sbjct: 422 CVKYNKRIIFPSTSEVYGMCDDHSFDEDESRLIVGPIHKQRWIYSVSKQLLDRVIWAYGK 481
Query: 276 GAGVEVRIARIFNTYGPRM-CIDDGRV-----VSNFVAQALRKEPLTVYGDGKQTRSFQF 329
G+ + R FN GPR+ +D R+ ++ + + P+ + G Q R F
Sbjct: 482 KEGLNFTLFRPFNWMGPRLDSLDSARIGSSRAITQLILNLVDGTPIQLVDGGAQKRCFTD 541
Query: 330 VSDLVEGLMRLMEGE----HVGPFNLGNP-GEFTMLELAQVVQETIDPN----------- 373
+ D +E L R++E + N+G+P E ++L++A+V+ + +
Sbjct: 542 IEDGIEALFRIIENKGNRCDGQIINIGSPDNEASILQMAEVLLGKFEAHPLRHHFPPFAG 601
Query: 374 -AKIE---FRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421
++E F + D R+P I A+ LL WEP + + + + K + F Q
Sbjct: 602 FKRVESKSFYGDGYQDVSHRRPSIKNARRLLDWEPTIEMEETIGKTLDFFLQ 653
>sp|Q6D2F1|ARNA_ERWCT Bifunctional polymyxin resistance protein ArnA OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=arnA PE=3 SV=1
Length = 673
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 152/349 (43%), Gaps = 39/349 (11%)
Query: 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPN 165
G + ++R+ R+++ G GF+G+HL +RL+ R D + + + G+P
Sbjct: 312 GNLASRVQRRRTRVLILGVNGFIGNHLTERLL-RDDRYEIYG--LDISSDAIARFLGDPR 368
Query: 166 FELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK 219
F + D+ +E + + D I L A+P+ Y NP++ + + L ++
Sbjct: 369 FHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCV 428
Query: 220 RVGARFLLTSTSEVYG-DPLQHPQKETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGA 277
R R + STSEVYG + ++T V PI R Y K+ + + Y
Sbjct: 429 RYNKRIVFPSTSEVYGMCDDKEFDEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKN 488
Query: 278 GVEVRIARIFNTYGPRMCIDDG------RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331
G+ + R FN GPR+ D R ++ + + P+ + G Q R F +
Sbjct: 489 GLRFTLFRPFNWMGPRLDTLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIH 548
Query: 332 DLVEGLMRLME---GEHVGP-FNLGNP-GEFTMLELAQVVQET----------------I 370
D +E L R++E G+ G N+GNP E ++ EL +++ + I
Sbjct: 549 DGIEALFRVIENRNGQCDGQIINIGNPHNEASIRELGEMLLTSFNAHPLRDRFPPFAGFI 608
Query: 371 DPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419
D + + +D H R P I AK LL WEP V + + + + + F
Sbjct: 609 DVESSSYYGKGYQDVAH-RTPSIRNAKRLLEWEPTVKMEQTVAETLDYF 656
>sp|P0C0R6|ARNA_SALCH Bifunctional polymyxin resistance protein ArnA OS=Salmonella
choleraesuis (strain SC-B67) GN=arnA PE=3 SV=1
Length = 660
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 149/346 (43%), Gaps = 41/346 (11%)
Query: 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV 173
++ +R+++ G GF+G+HL +RL+ + + + + + H P F + D+
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH---PRFHFVEGDI 369
Query: 174 ------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 227
+E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 370 SIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVF 429
Query: 228 TSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
STSEVYG + G VN R Y K+ + + Y G+ +
Sbjct: 430 PSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFTL 487
Query: 284 ARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337
R FN GPR+ I R ++ + + P+ + G+Q R F + D +E L
Sbjct: 488 FRPFNWMGPRLDSLSAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEAL 547
Query: 338 MRLM--EGEHVGP--FNLGNP-GEFTMLELAQVVQETIDPN-AKIEFRP----------- 380
R++ EG+ N+GNP E ++ ELA ++ ++ D + + F P
Sbjct: 548 FRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVASRS 607
Query: 381 ---NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423
D RKP I A+ LGWEP +++R + + + F + +
Sbjct: 608 YYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSV 653
>sp|B5FNT9|ARNA_SALDC Bifunctional polymyxin resistance protein ArnA OS=Salmonella dublin
(strain CT_02021853) GN=arnA PE=3 SV=1
Length = 660
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 149/346 (43%), Gaps = 41/346 (11%)
Query: 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV 173
++ +R+++ G GF+G+HL +RL+ + + + + + H P F + D+
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH---PRFHFVEGDI 369
Query: 174 ------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 227
+E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 370 SIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVF 429
Query: 228 TSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
STSEVYG + G VN R Y K+ + + Y G+ +
Sbjct: 430 PSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFTL 487
Query: 284 ARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337
R FN GPR+ I R ++ + + P+ + G+Q R F + D +E L
Sbjct: 488 FRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEAL 547
Query: 338 MRLM--EGEHVGP--FNLGNP-GEFTMLELAQVVQETIDPN-AKIEFRP----------- 380
R++ EG+ N+GNP E ++ ELA ++ ++ D + + F P
Sbjct: 548 FRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESRS 607
Query: 381 ---NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423
D RKP I A+ LGWEP +++R + + + F + +
Sbjct: 608 YYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSV 653
>sp|B4SYX1|ARNA_SALNS Bifunctional polymyxin resistance protein ArnA OS=Salmonella
newport (strain SL254) GN=arnA PE=3 SV=1
Length = 660
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 149/346 (43%), Gaps = 41/346 (11%)
Query: 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV 173
++ +R+++ G GF+G+HL +RL+ + + + + + H P F + D+
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH---PRFHFVEGDI 369
Query: 174 ------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 227
+E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 370 SIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVF 429
Query: 228 TSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
STSEVYG + G VN R Y K+ + + Y G+ +
Sbjct: 430 PSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFTL 487
Query: 284 ARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337
R FN GPR+ I R ++ + + P+ + G+Q R F + D +E L
Sbjct: 488 FRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEAL 547
Query: 338 MRLM--EGEHVGP--FNLGNP-GEFTMLELAQVVQETIDPN-AKIEFRP----------- 380
R++ EG+ N+GNP E ++ ELA ++ ++ D + + F P
Sbjct: 548 FRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESRS 607
Query: 381 ---NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423
D RKP I A+ LGWEP +++R + + + F + +
Sbjct: 608 YYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSV 653
>sp|C0Q069|ARNA_SALPC Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi C (strain RKS4594) GN=arnA PE=3 SV=1
Length = 660
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 149/346 (43%), Gaps = 41/346 (11%)
Query: 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV 173
++ +R+++ G GF+G+HL +RL+ + + + + + H P F + D+
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH---PRFHFVEGDI 369
Query: 174 ------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 227
+E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 370 SIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVF 429
Query: 228 TSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
STSEVYG + G VN R Y K+ + + Y G+ +
Sbjct: 430 PSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFTL 487
Query: 284 ARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337
R FN GPR+ I R ++ + + P+ + G+Q R F + D +E L
Sbjct: 488 FRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEAL 547
Query: 338 MRLM--EGEHVGP--FNLGNP-GEFTMLELAQVVQETIDPN-AKIEFRP----------- 380
R++ EG+ N+GNP E ++ ELA ++ ++ D + + F P
Sbjct: 548 FRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESRS 607
Query: 381 ---NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423
D RKP I A+ LGWEP +++R + + + F + +
Sbjct: 608 YYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSV 653
>sp|B7MXT6|ARNA_ECO81 Bifunctional polymyxin resistance protein ArnA OS=Escherichia coli
O81 (strain ED1a) GN=arnA PE=3 SV=1
Length = 660
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 149/348 (42%), Gaps = 43/348 (12%)
Query: 109 PLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFEL 168
P R+ R+++ G GF+G+HL +RL+ + + + M+H P+F
Sbjct: 308 PACAARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFMNH---PHFHF 364
Query: 169 IRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
+ D+ +E + + D + L A+P+ Y NP++ + + L ++ +
Sbjct: 365 VEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR 424
Query: 223 ARFLLTSTSEVYGDPLQHPQKETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRGAGVE 280
R + STSEVYG E + V P+ R Y K+ + + Y G++
Sbjct: 425 KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQ 484
Query: 281 VRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
+ R FN GPR+ I R ++ + + P+ + GKQ R F + D +
Sbjct: 485 FTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGI 544
Query: 335 EGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVVQETIDPNAKIEFRP------ 380
E L R++E GE + N+GNP E ++ EL +++ + + + + P
Sbjct: 545 EALYRIIENAGNRCDGEII---NIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFR 601
Query: 381 ---------NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419
D RKP I A+ L WEPK+ +++ + + + F
Sbjct: 602 VVESSSYYGKGYQDVEHRKPSIRNARRCLNWEPKIDMQETIDETLDFF 649
>sp|Q9S642|RMLB_NEIMA dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=rfbB1 PE=3 SV=1
Length = 341
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 145/332 (43%), Gaps = 37/332 (11%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVE 175
+I+VTGGAGF+GS +V +I DSV+ +D + G E++ NP + + D+ +
Sbjct: 3 KILVTGGAGFIGSAVVRHIIRNTQDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICD 62
Query: 176 PLLLEV-------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA---------- 218
L+ D + HLA + + + I+TN+VGT N+L A
Sbjct: 63 RAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQMPSE 122
Query: 219 KRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAG 278
K RF ST EVYGD + + P S Y K +++ L + R G
Sbjct: 123 KHEAFRFHHISTDEVYGDL---SGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 279 VEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLM 338
+ + N YGP + +++ + AL +PL VYGDG Q R + FV D L
Sbjct: 180 LPTIVTNCSNNYGPYHFPE--KLIPLMILNALDGKPLPVYGDGMQIRDWLFVEDHARALY 237
Query: 339 RLMEGEHVGP-FNLGNPGEFTMLELAQVVQETIDPNAK------------IEFRPNTEDD 385
+++ VG +N+G E +E+ + + ++ A I F +
Sbjct: 238 QVVTEGVVGETYNIGGHNEKANIEVVKTICALLEELAPEKPAGVARYEDLITFVQDRPGH 297
Query: 386 PHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
+ D ++ + LGW+P + GL K V+
Sbjct: 298 DARYAVDTAKIRRDLGWQPLETFESGLRKTVQ 329
>sp|A4WAM3|ARNA_ENT38 Bifunctional polymyxin resistance protein ArnA OS=Enterobacter sp.
(strain 638) GN=arnA PE=3 SV=1
Length = 660
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 149/353 (42%), Gaps = 45/353 (12%)
Query: 109 PLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF----FTGRKENVMHHFGNP 164
P+ ++ R+++ G GF+G+HL +RL+ DNF + + GN
Sbjct: 308 PVSAIKRRTRVLILGVNGFIGNHLTERLLQD-------DNFEVYGLDIGSDAISRFIGNS 360
Query: 165 NFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 361 RFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDC 420
Query: 219 KRVGARFLLTSTSEVYGDPLQHPQKETYWG-NVNPIG-VRSCYDEGKRTAETLTMDYHRG 276
+ R + STSEVYG E + V PI R Y K+ + + Y
Sbjct: 421 VKYQKRIIFPSTSEVYGMCSDKVFDEDHSNLIVGPINKQRWIYSVSKQLLDRVIWAYGEK 480
Query: 277 AGVEVRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330
G+ + R FN GPR+ I R ++ + + P+ + G+Q R F +
Sbjct: 481 EGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGRQKRCFTDI 540
Query: 331 SDLVEGLMRLMEGEHVGP----FNLGNP-GEFTMLELAQVVQETIDPN-AKIEFRP---- 380
SD +E L R++E ++ N+GNP E ++ ELA+++ + + + + F P
Sbjct: 541 SDGIEALFRIIENKNSNCDGQIINIGNPDNEASIKELAEMLLASFEKHPLRNHFPPFAGF 600
Query: 381 ----------NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423
D RKP I A L+ W P V + K + + + F + +
Sbjct: 601 REVESSTYYGKGYQDVEHRKPSIRNAHRLISWTPTVEMEKTIDETLDFFLKTV 653
>sp|Q8FFM1|ARNA_ECOL6 Bifunctional polymyxin resistance protein ArnA OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=arnA PE=3
SV=1
Length = 660
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 149/348 (42%), Gaps = 43/348 (12%)
Query: 109 PLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFEL 168
P R+ R+++ G GF+G+HL +RL+ + + + M+H P+F
Sbjct: 308 PACAARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFMNH---PHFHF 364
Query: 169 IRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
+ D+ +E + + D + L A+P+ Y NP++ + + L ++ +
Sbjct: 365 VEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR 424
Query: 223 ARFLLTSTSEVYGDPLQHPQKETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRGAGVE 280
R + STSEVYG E + V P+ R Y K+ + + Y G++
Sbjct: 425 KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQ 484
Query: 281 VRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
+ R FN GPR+ I R ++ + + P+ + GKQ R F + D +
Sbjct: 485 FTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGI 544
Query: 335 EGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVVQETIDPNAKIEFRP------ 380
E L R++E GE + N+GNP E ++ EL +++ + + + + P
Sbjct: 545 EALYRIIENAGNRCDGEII---NIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFR 601
Query: 381 ---------NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419
D RKP I A+ L WEPK+ +++ + + + F
Sbjct: 602 VVESSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQETIDETLDFF 649
>sp|C6DAW5|ARNA_PECCP Bifunctional polymyxin resistance protein ArnA OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3
SV=1
Length = 672
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 155/358 (43%), Gaps = 37/358 (10%)
Query: 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPN 165
G + ++R+ R+++ G GF+G+HL +RL+ R D + + + G+P
Sbjct: 311 GNLASRVQRRRTRVLILGVNGFIGNHLTERLL-RDDRYEIYG--LDISSDAIARFLGDPR 367
Query: 166 FELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK 219
F + D+ +E + + D I L A+P+ Y NP++ + + L ++
Sbjct: 368 FHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCV 427
Query: 220 RVGARFLLTSTSEVYG-DPLQHPQKETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGA 277
R R + STSEVYG + ++T V PI R Y K+ + + Y
Sbjct: 428 RYNKRIVFPSTSEVYGMCDDKEFDEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKN 487
Query: 278 GVEVRIARIFNTYGPRMCIDDG------RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331
G+ + R FN GPR+ D R ++ + + P+ + G Q R F +
Sbjct: 488 GLRFTLFRPFNWMGPRLDTLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIH 547
Query: 332 DLVEGLMRLME---GEHVGP-FNLGNP-GEFTMLELAQVVQETIDPN----------AKI 376
D +E L R++E G+ G N+GNP E ++ EL ++ + + + I
Sbjct: 548 DGIEALFRIIENRNGQCDGQIINIGNPHNEASIRELGDMLLTSFNAHPLRDRFPPFAGFI 607
Query: 377 EFRPNT-----EDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFGDHKE 429
E ++ D R P I AK LL WEP V + + + + + F + + H +
Sbjct: 608 EVESSSYYGKGYQDVAHRTPSIRNAKRLLEWEPTVKMEQTVAETLDYFLRTVDPQHAD 665
>sp|Q0TFI7|ARNA_ECOL5 Bifunctional polymyxin resistance protein ArnA OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=arnA PE=3 SV=1
Length = 660
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 151/352 (42%), Gaps = 43/352 (12%)
Query: 109 PLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFEL 168
P R+ R+++ G GF+G+HL +RL+ + + + ++H P+F
Sbjct: 308 PACAARRRTRVLILGVNGFIGNHLTERLLCEDHYEVYGLDIGSDAISRFLNH---PHFHF 364
Query: 169 IRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
+ D+ +E + + D + L A+P+ Y NP++ + + L ++ +
Sbjct: 365 VEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR 424
Query: 223 ARFLLTSTSEVYGDPLQHPQKETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRGAGVE 280
R + STSEVYG E + V P+ R Y K+ + + Y G++
Sbjct: 425 KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQ 484
Query: 281 VRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
+ R FN GPR+ I R ++ + + P+ + GKQ R F + D +
Sbjct: 485 FTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGI 544
Query: 335 EGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVVQETIDPNAKIEFRP------ 380
E L R++E GE + N+GNP E ++ EL +++ + + + + P
Sbjct: 545 EALYRIIENAGNRCDGEII---NIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFR 601
Query: 381 ---------NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423
D RKP I A+ L WEPK+ +++ + + + F + +
Sbjct: 602 VVESSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQETIDETLDFFLRTV 653
>sp|Q7WTB1|GALE_LACHE UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2
SV=1
Length = 330
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 142/318 (44%), Gaps = 42/318 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
++++V GGAG++GSH V L+ G+ V+V+D +TG ++ V +P + + D+ +
Sbjct: 1 MKVLVIGGAGYIGSHAVRELVKEGNDVLVLDALYTGHRKAV-----DPKAKFYQGDIEDT 55
Query: 177 LLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL-T 228
L+ ++D + H A + P+K NV G +++L ++L+ +
Sbjct: 56 FLVSKILRDEKIDAVMHFAAYSLVPESVKKPLKYYDNNVTGMISLLQAMNDANVKYLVFS 115
Query: 229 STSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S++ YG P + P E +NPI + Y E K E + + G++ R FN
Sbjct: 116 SSAATYGIPKKLPITED--TPLNPI---NPYGETKMMMEKIMAWADKADGIKYTALRYFN 170
Query: 289 TYGPRMCIDDGRV----------VSNFVAQALRKE-PLTVYG------DGKQTRSFQFVS 331
G DG + + N + A+ + T++G DG R + V
Sbjct: 171 VAG---ASSDGSIGEDHAPETHLIPNILKSAISGDGKFTIFGDDYDTKDGTNVRDYVQVE 227
Query: 332 DLVE----GLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPH 387
DL++ L +M+ FNLG ++ LE+ + ++ + P DP
Sbjct: 228 DLIDAHILALKHMMKTNKSDVFNLGTAHGYSNLEILESAKKVTGIDIPYTMGPRRGGDPD 287
Query: 388 KRKPDISRAKELLGWEPK 405
D ++A+ +LGW+PK
Sbjct: 288 SLVADSTKARTVLGWKPK 305
>sp|A9N5B2|ARNA_SALPB Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=arnA PE=3
SV=1
Length = 660
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 149/346 (43%), Gaps = 41/346 (11%)
Query: 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV 173
++ +R+++ G GF+G+HL +RL+ + + + + + H P F + D+
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH---PRFHFVEGDI 369
Query: 174 ------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 227
+E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 370 SIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVF 429
Query: 228 TSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
STSEVYG + G VN R Y K+ + + Y G+ +
Sbjct: 430 PSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFTL 487
Query: 284 ARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337
R FN GPR+ I R ++ + + P+ + G+Q R F + D +E L
Sbjct: 488 FRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEAL 547
Query: 338 MRLM--EGEHVGP--FNLGNP-GEFTMLELAQVVQETIDPN-AKIEFRP----------- 380
R++ +G+ N+GNP E ++ ELA ++ ++ D + + F P
Sbjct: 548 FRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESRS 607
Query: 381 ---NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423
D RKP I A+ LGWEP +++R + + + F + +
Sbjct: 608 YYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSV 653
>sp|B4TBG6|ARNA_SALHS Bifunctional polymyxin resistance protein ArnA OS=Salmonella
heidelberg (strain SL476) GN=arnA PE=3 SV=1
Length = 660
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 149/346 (43%), Gaps = 41/346 (11%)
Query: 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV 173
++ +R+++ G GF+G+HL +RL+ + + + + + H P F + D+
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH---PRFHFVEGDI 369
Query: 174 ------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 227
+E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 370 SIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVF 429
Query: 228 TSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
STSEVYG + G VN R Y K+ + + Y G+ +
Sbjct: 430 PSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFTL 487
Query: 284 ARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337
R FN GPR+ I R ++ + + P+ + G+Q R F + D +E L
Sbjct: 488 FRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEAL 547
Query: 338 MRLM--EGEHVGP--FNLGNP-GEFTMLELAQVVQETIDPN-AKIEFRP----------- 380
R++ +G+ N+GNP E ++ ELA ++ ++ D + + F P
Sbjct: 548 FRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESRS 607
Query: 381 ---NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423
D RKP I A+ LGWEP +++R + + + F + +
Sbjct: 608 YYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSV 653
>sp|B5RCC4|ARNA_SALG2 Bifunctional polymyxin resistance protein ArnA OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=arnA PE=3
SV=1
Length = 660
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 149/346 (43%), Gaps = 41/346 (11%)
Query: 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV 173
++ +R+++ G GF+G+HL +RL+ + + + + + H P F + D+
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH---PRFHFVEGDI 369
Query: 174 ------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 227
+E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 370 SIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVF 429
Query: 228 TSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
STSEVYG + G VN R Y K+ + + Y G+ +
Sbjct: 430 PSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFTL 487
Query: 284 ARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337
R FN GPR+ I R ++ + + P+ + G+Q R F + D +E L
Sbjct: 488 FRPFNWMGPRLDSLNAARIGSSRAITQLILSLVEGTPIKLIDGGQQKRCFTDIRDGIEAL 547
Query: 338 MRLM--EGEHVGP--FNLGNP-GEFTMLELAQVVQETIDPN-AKIEFRP----------- 380
R++ +G+ N+GNP E ++ ELA ++ ++ D + + F P
Sbjct: 548 FRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESRS 607
Query: 381 ---NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423
D RKP I A+ LGWEP +++R + + + F + +
Sbjct: 608 YYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSV 653
>sp|O52325|ARNA_SALTY Bifunctional polymyxin resistance protein ArnA OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=arnA PE=2 SV=1
Length = 660
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 149/346 (43%), Gaps = 41/346 (11%)
Query: 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV 173
++ +R+++ G GF+G+HL +RL+ + + + + + H P F + D+
Sbjct: 313 KRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH---PRFHFVEGDI 369
Query: 174 ------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 227
+E + + D + L A+P+ Y NP++ + + L ++ + R +
Sbjct: 370 SIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVF 429
Query: 228 TSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
STSEVYG + G VN R Y K+ + + Y G+ +
Sbjct: 430 PSTSEVYGMCTDASFDEDKSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLRFTL 487
Query: 284 ARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337
R FN GPR+ I R ++ + + P+ + G+Q R F + D +E L
Sbjct: 488 FRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEAL 547
Query: 338 MRLM--EGEHVGP--FNLGNP-GEFTMLELAQVVQETIDPN-AKIEFRP----------- 380
R++ +G+ N+GNP E ++ ELA ++ ++ D + + F P
Sbjct: 548 FRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESRS 607
Query: 381 ---NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423
D RKP I A+ LGWEP +++R + + + F + +
Sbjct: 608 YYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSV 653
>sp|O22141|GAE4_ARATH UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1
SV=1
Length = 437
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 153/357 (42%), Gaps = 57/357 (15%)
Query: 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE 175
G+ ++VTG AGFVG+H+ L RGD VI +DNF + + +P+ + R ++E
Sbjct: 96 GITVLVTGAAGFVGTHVSAALKRRGDGVIGLDNF---------NDYYDPSLKRARRALLE 146
Query: 176 P---LLLEVD-----------------QIYHLACPASPVHYKFNPVKTIKTNVVGTLNML 215
++E D + HLA A + NP + +N+ G +N+L
Sbjct: 147 RSGIFIVEGDINDVELLRKLFKIVSFTHVMHLAAQAGVRYAMENPSSYVHSNIAGFVNLL 206
Query: 216 GLAKRVGAR--FLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDY 273
+ K V + + S+S VYG + P E + P S Y K+ E + Y
Sbjct: 207 EICKSVNPQPAIVWASSSSVYGLNTKVPFSEKDKTD-QPA---SLYAATKKAGEEIAHTY 262
Query: 274 HRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY---GDGKQTRSFQFV 330
+ G+ + R F YGP D F L+ + ++++ G R F ++
Sbjct: 263 NHIYGLSLTGLRFFTVYGPWGRPDMAYFF--FTKDILKGKSISIFESANHGTVARDFTYI 320
Query: 331 SDLVEGLMRLME---------GEHVGP-----FNLGNPGEFTMLELAQVVQETIDPNAKI 376
D+V+G + ++ G+ GP FNLGN + +L ++++ + AK
Sbjct: 321 DDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVRILERQLKVKAKK 380
Query: 377 EF--RPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFGDHKEGG 431
P D P +IS A+ LG++P L+ GL K V+ + GD K
Sbjct: 381 NLIKMPRNGDVPFTH-ANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYSGDKKAAA 436
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,791,011
Number of Sequences: 539616
Number of extensions: 7972617
Number of successful extensions: 18149
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 190
Number of HSP's that attempted gapping in prelim test: 17105
Number of HSP's gapped (non-prelim): 664
length of query: 442
length of database: 191,569,459
effective HSP length: 121
effective length of query: 321
effective length of database: 126,275,923
effective search space: 40534571283
effective search space used: 40534571283
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)