Query 013469
Match_columns 442
No_of_seqs 393 out of 2183
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 11:10:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kiz_A E3 ubiquitin-protein li 99.4 4.9E-13 1.7E-17 102.2 5.0 51 333-387 12-65 (69)
2 2ep4_A Ring finger protein 24; 99.3 9.1E-13 3.1E-17 102.1 5.8 50 333-386 13-65 (74)
3 1iym_A EL5; ring-H2 finger, ub 99.3 2.8E-13 9.6E-18 98.7 2.7 47 334-384 4-54 (55)
4 1x4j_A Ring finger protein 38; 99.3 3E-13 1E-17 105.2 3.0 49 333-385 21-72 (75)
5 2ect_A Ring finger protein 126 99.3 6.9E-13 2.4E-17 103.8 5.0 53 333-389 13-68 (78)
6 2djb_A Polycomb group ring fin 99.3 9.7E-13 3.3E-17 101.5 5.3 52 334-389 14-66 (72)
7 1chc_A Equine herpes virus-1 r 99.3 1.1E-12 3.7E-17 99.9 4.7 49 333-385 3-52 (68)
8 2ecl_A Ring-box protein 2; RNF 99.3 5.9E-13 2E-17 105.4 3.2 48 334-385 14-76 (81)
9 2l0b_A E3 ubiquitin-protein li 99.3 5.3E-13 1.8E-17 107.9 2.7 48 334-385 39-89 (91)
10 2ecm_A Ring finger and CHY zin 99.3 8.7E-13 3E-17 96.0 3.5 47 334-384 4-54 (55)
11 2ea6_A Ring finger protein 4; 99.3 7.2E-13 2.5E-17 100.9 3.1 49 333-385 13-68 (69)
12 3ng2_A RNF4, snurf, ring finge 99.3 7.4E-13 2.5E-17 101.5 3.2 49 334-386 9-64 (71)
13 2d8t_A Dactylidin, ring finger 99.3 3.9E-13 1.3E-17 103.5 1.4 50 333-386 13-62 (71)
14 1v87_A Deltex protein 2; ring- 99.3 2.6E-12 8.9E-17 108.0 6.2 53 334-386 24-95 (114)
15 2xeu_A Ring finger protein 4; 99.3 1.2E-12 4.3E-17 98.0 2.9 49 334-386 2-57 (64)
16 4ayc_A E3 ubiquitin-protein li 99.3 1.5E-12 5E-17 113.5 3.5 49 334-386 52-100 (138)
17 2ecy_A TNF receptor-associated 99.3 2.7E-12 9.3E-17 97.2 4.1 50 334-386 14-63 (66)
18 3dpl_R Ring-box protein 1; ubi 99.2 3E-12 1E-16 106.4 4.0 47 334-384 36-100 (106)
19 2yur_A Retinoblastoma-binding 99.2 4.6E-12 1.6E-16 98.3 4.6 51 334-386 14-65 (74)
20 2csy_A Zinc finger protein 183 99.2 4.4E-12 1.5E-16 100.1 4.1 48 333-384 13-60 (81)
21 2ysl_A Tripartite motif-contai 99.2 4.4E-12 1.5E-16 97.8 3.4 53 333-386 18-70 (73)
22 1t1h_A Gspef-atpub14, armadill 99.2 5.9E-12 2E-16 98.4 4.2 50 334-386 7-56 (78)
23 2ecn_A Ring finger protein 141 99.2 2.9E-12 1E-16 98.1 1.8 48 334-386 14-61 (70)
24 2ct2_A Tripartite motif protei 99.2 9.7E-12 3.3E-16 99.3 4.5 53 333-386 13-69 (88)
25 3fl2_A E3 ubiquitin-protein li 99.2 2.1E-11 7.2E-16 104.1 5.2 49 334-385 51-99 (124)
26 3lrq_A E3 ubiquitin-protein li 99.1 1.3E-11 4.3E-16 101.6 3.0 50 334-386 21-71 (100)
27 2ysj_A Tripartite motif-contai 99.1 2.6E-11 8.9E-16 90.8 4.2 46 333-379 18-63 (63)
28 2ecv_A Tripartite motif-contai 99.1 4.1E-11 1.4E-15 94.7 5.6 54 333-386 17-72 (85)
29 3ztg_A E3 ubiquitin-protein li 99.1 2.2E-11 7.4E-16 98.3 4.0 50 333-384 11-61 (92)
30 2ecw_A Tripartite motif-contai 99.1 3.5E-11 1.2E-15 95.1 5.2 54 333-386 17-72 (85)
31 1g25_A CDK-activating kinase a 99.1 2.3E-11 8E-16 91.7 3.9 50 335-387 3-57 (65)
32 2egp_A Tripartite motif-contai 99.1 1E-11 3.5E-16 97.2 1.8 54 333-386 10-66 (79)
33 4a0k_B E3 ubiquitin-protein li 99.1 8.5E-12 2.9E-16 105.3 0.2 47 334-384 47-111 (117)
34 2ckl_A Polycomb group ring fin 99.1 3.6E-11 1.2E-15 100.1 3.7 50 333-386 13-63 (108)
35 2y43_A E3 ubiquitin-protein li 99.1 2.5E-11 8.6E-16 99.4 2.6 48 334-385 21-69 (99)
36 2ecj_A Tripartite motif-contai 99.1 4E-11 1.4E-15 88.0 3.2 46 333-379 13-58 (58)
37 1jm7_A BRCA1, breast cancer ty 99.0 1.3E-10 4.3E-15 97.1 4.8 51 335-386 21-71 (112)
38 2kr4_A Ubiquitin conjugation f 99.0 1.3E-10 4.4E-15 92.7 3.9 49 334-386 13-61 (85)
39 3l11_A E3 ubiquitin-protein li 99.0 2E-11 6.8E-16 102.8 -0.9 48 335-385 15-62 (115)
40 2d8s_A Cellular modulator of i 99.0 1.5E-10 5E-15 91.3 4.1 52 333-386 13-71 (80)
41 1rmd_A RAG1; V(D)J recombinati 99.0 7E-11 2.4E-15 99.6 2.4 50 334-386 22-71 (116)
42 4ap4_A E3 ubiquitin ligase RNF 99.0 7.9E-11 2.7E-15 100.9 2.5 50 334-387 6-62 (133)
43 1z6u_A NP95-like ring finger p 99.0 1.1E-10 3.7E-15 103.2 3.4 50 334-386 77-126 (150)
44 2ct0_A Non-SMC element 1 homol 99.0 2.5E-10 8.6E-15 88.3 4.7 56 333-390 13-69 (74)
45 1e4u_A Transcriptional repress 99.0 4.4E-10 1.5E-14 88.1 5.8 52 333-387 9-64 (78)
46 3hct_A TNF receptor-associated 99.0 1.4E-10 4.8E-15 98.1 2.6 50 334-386 17-66 (118)
47 2ckl_B Ubiquitin ligase protei 99.0 1.8E-10 6.2E-15 103.2 3.4 48 335-385 54-102 (165)
48 2c2l_A CHIP, carboxy terminus 99.0 6.2E-10 2.1E-14 107.4 7.3 49 334-385 207-255 (281)
49 2kre_A Ubiquitin conjugation f 99.0 2.1E-10 7.1E-15 94.4 3.2 49 334-386 28-76 (100)
50 1bor_A Transcription factor PM 99.0 1.7E-10 5.7E-15 84.5 1.9 46 334-386 5-50 (56)
51 4ap4_A E3 ubiquitin ligase RNF 98.9 2.4E-10 8.2E-15 97.9 2.5 50 333-386 70-126 (133)
52 1wgm_A Ubiquitin conjugation f 98.9 3.6E-10 1.2E-14 92.6 3.3 49 334-386 21-70 (98)
53 2vje_A E3 ubiquitin-protein li 98.9 3.9E-10 1.3E-14 84.9 2.9 48 334-385 7-57 (64)
54 2vje_B MDM4 protein; proto-onc 98.9 4.1E-10 1.4E-14 84.6 2.8 49 333-385 5-56 (63)
55 2y1n_A E3 ubiquitin-protein li 98.9 6E-10 2E-14 112.0 4.2 49 335-386 332-380 (389)
56 3knv_A TNF receptor-associated 98.9 3E-10 1E-14 99.3 0.8 50 333-385 29-78 (141)
57 1jm7_B BARD1, BRCA1-associated 98.8 1E-09 3.4E-14 92.7 1.9 46 334-385 21-67 (117)
58 2f42_A STIP1 homology and U-bo 98.8 1.9E-09 6.3E-14 97.6 3.3 50 334-386 105-154 (179)
59 4ic3_A E3 ubiquitin-protein li 98.7 1.8E-09 6.1E-14 83.7 0.8 44 334-385 23-67 (74)
60 2yu4_A E3 SUMO-protein ligase 98.7 3.5E-09 1.2E-13 85.9 2.4 51 334-384 6-62 (94)
61 3hcs_A TNF receptor-associated 98.7 4E-09 1.4E-13 94.8 2.6 50 334-386 17-66 (170)
62 2ea5_A Cell growth regulator w 98.7 8.8E-09 3E-13 78.4 4.0 46 333-386 13-59 (68)
63 2ecg_A Baculoviral IAP repeat- 98.6 1.5E-08 5E-13 78.6 3.8 44 335-386 25-69 (75)
64 3k1l_B Fancl; UBC, ring, RWD, 98.6 2.1E-08 7.1E-13 98.2 2.8 53 334-386 307-374 (381)
65 3htk_C E3 SUMO-protein ligase 98.5 5.7E-08 2E-12 92.2 3.9 50 335-386 181-233 (267)
66 1vyx_A ORF K3, K3RING; zinc-bi 98.5 8.3E-08 2.8E-12 71.1 3.8 50 333-384 4-58 (60)
67 2bay_A PRE-mRNA splicing facto 98.4 8.5E-08 2.9E-12 71.3 3.0 49 335-387 3-52 (61)
68 2yho_A E3 ubiquitin-protein li 98.4 5.5E-08 1.9E-12 76.2 1.1 44 335-386 18-62 (79)
69 1wim_A KIAA0161 protein; ring 98.3 3.4E-07 1.2E-11 73.9 3.6 49 334-382 4-61 (94)
70 3t6p_A Baculoviral IAP repeat- 98.3 1.2E-07 4E-12 94.6 0.2 44 334-385 294-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.0 2.5E-06 8.5E-11 68.7 2.8 47 337-386 3-50 (101)
72 3nw0_A Non-structural maintena 97.7 1.7E-05 5.8E-10 74.9 4.4 53 335-389 180-233 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 93.9 0.031 1.1E-06 44.9 2.9 31 335-365 3-36 (101)
74 2ko5_A Ring finger protein Z; 93.5 0.035 1.2E-06 43.9 2.4 47 335-387 28-75 (99)
75 1wil_A KIAA1045 protein; ring 93.3 0.054 1.8E-06 41.9 3.0 32 333-365 13-47 (89)
76 2lri_C Autoimmune regulator; Z 92.6 0.06 2E-06 40.1 2.4 47 333-382 10-59 (66)
77 3m62_A Ubiquitin conjugation f 92.1 0.18 6.1E-06 55.9 6.3 48 335-386 891-939 (968)
78 1mm2_A MI2-beta; PHD, zinc fin 88.3 0.092 3.1E-06 38.4 0.0 48 333-383 7-57 (61)
79 2k16_A Transcription initiatio 88.2 0.049 1.7E-06 41.4 -1.6 51 334-384 17-70 (75)
80 1f62_A Transcription factor WS 86.4 0.23 8E-06 34.6 1.3 45 337-381 2-49 (51)
81 2l5u_A Chromodomain-helicase-D 85.4 0.19 6.6E-06 36.6 0.4 46 333-381 9-57 (61)
82 3u5n_A E3 ubiquitin-protein li 84.8 0.11 3.8E-06 47.5 -1.5 48 333-383 5-55 (207)
83 3o36_A Transcription intermedi 84.7 0.31 1.1E-05 43.5 1.6 47 334-383 3-52 (184)
84 2yql_A PHD finger protein 21A; 81.2 0.12 4.1E-06 37.0 -2.2 46 333-381 7-55 (56)
85 1fp0_A KAP-1 corepressor; PHD 80.7 0.47 1.6E-05 37.3 1.0 47 333-382 23-72 (88)
86 2puy_A PHD finger protein 21A; 80.0 0.12 4E-06 37.6 -2.6 47 334-383 4-53 (60)
87 2ysm_A Myeloid/lymphoid or mix 78.9 0.4 1.4E-05 39.1 -0.0 48 333-380 5-55 (111)
88 1we9_A PHD finger family prote 78.8 0.26 8.9E-06 36.1 -1.1 49 334-382 5-58 (64)
89 2ro1_A Transcription intermedi 78.8 0.45 1.5E-05 42.8 0.3 49 335-383 2-50 (189)
90 1wen_A Inhibitor of growth fam 78.5 0.94 3.2E-05 34.0 2.0 44 335-382 16-65 (71)
91 1xwh_A Autoimmune regulator; P 76.5 0.33 1.1E-05 35.9 -1.1 47 333-382 6-55 (66)
92 2lbm_A Transcriptional regulat 76.3 1.5 5.3E-05 37.5 2.9 49 333-381 61-116 (142)
93 2cs3_A Protein C14ORF4, MY039 76.3 3 0.0001 31.8 4.2 45 335-379 15-64 (93)
94 3lqh_A Histone-lysine N-methyl 75.6 1.2 4.1E-05 39.8 2.2 49 335-383 2-64 (183)
95 1weu_A Inhibitor of growth fam 73.3 1.3 4.5E-05 34.9 1.6 43 336-382 37-85 (91)
96 2e6r_A Jumonji/ARID domain-con 72.7 0.3 1E-05 38.7 -2.3 49 334-382 15-66 (92)
97 3v43_A Histone acetyltransfera 71.2 0.8 2.7E-05 37.5 -0.1 45 337-381 63-111 (112)
98 2e6s_A E3 ubiquitin-protein li 70.7 0.81 2.8E-05 35.0 -0.2 47 335-381 26-76 (77)
99 3ask_A E3 ubiquitin-protein li 68.9 1 3.4E-05 41.7 -0.0 47 336-382 175-225 (226)
100 3ql9_A Transcriptional regulat 68.8 3 0.0001 35.0 2.9 50 333-382 55-111 (129)
101 1wev_A Riken cDNA 1110020M19; 68.6 0.62 2.1E-05 36.5 -1.3 52 334-385 15-75 (88)
102 2jmi_A Protein YNG1, ING1 homo 67.5 1 3.5E-05 35.5 -0.2 45 333-381 24-75 (90)
103 2yt5_A Metal-response element- 67.5 0.53 1.8E-05 34.5 -1.8 51 333-383 4-62 (66)
104 3c6w_A P28ING5, inhibitor of g 66.9 0.7 2.4E-05 33.4 -1.2 43 335-381 9-57 (59)
105 3shb_A E3 ubiquitin-protein li 65.2 0.69 2.4E-05 35.4 -1.6 45 337-381 28-76 (77)
106 4gne_A Histone-lysine N-methyl 64.9 2.6 8.9E-05 34.2 1.7 52 333-386 13-66 (107)
107 3asl_A E3 ubiquitin-protein li 64.9 1 3.5E-05 33.7 -0.7 45 337-381 20-68 (70)
108 1weo_A Cellulose synthase, cat 64.6 19 0.00066 28.0 6.4 48 334-384 15-69 (93)
109 1joc_A EEA1, early endosomal a 63.5 6.5 0.00022 32.7 4.0 29 335-363 69-101 (125)
110 2g6q_A Inhibitor of growth pro 60.6 1.1 3.9E-05 32.6 -1.1 43 335-381 11-59 (62)
111 1wep_A PHF8; structural genomi 59.4 7.8 0.00027 29.3 3.5 48 335-383 12-64 (79)
112 1zbd_B Rabphilin-3A; G protein 58.4 4.2 0.00014 34.4 1.9 30 333-362 53-87 (134)
113 2lv9_A Histone-lysine N-methyl 57.6 2.8 9.5E-05 33.4 0.6 43 337-381 30-75 (98)
114 2vnf_A ING 4, P29ING4, inhibit 56.0 1.6 5.4E-05 31.5 -1.0 43 335-381 10-58 (60)
115 2kgg_A Histone demethylase jar 55.4 1.5 5.1E-05 30.6 -1.1 44 337-380 4-52 (52)
116 2ri7_A Nucleosome-remodeling f 54.8 2.8 9.6E-05 36.7 0.3 48 334-382 7-59 (174)
117 3o70_A PHD finger protein 13; 54.2 2.1 7.3E-05 31.7 -0.5 45 335-381 19-66 (68)
118 1wem_A Death associated transc 53.3 3 0.0001 31.3 0.2 47 335-382 16-70 (76)
119 2vpb_A Hpygo1, pygopus homolog 53.1 7.1 0.00024 28.5 2.2 48 334-381 7-65 (65)
120 2gmg_A Hypothetical protein PF 52.9 6.6 0.00023 31.6 2.1 29 347-384 67-95 (105)
121 2ysm_A Myeloid/lymphoid or mix 52.2 1.8 6.2E-05 35.1 -1.4 46 337-382 56-104 (111)
122 3v43_A Histone acetyltransfera 52.1 13 0.00043 30.1 3.8 44 334-380 4-62 (112)
123 2kwj_A Zinc finger protein DPF 51.7 4.5 0.00016 33.0 1.0 43 335-380 1-59 (114)
124 1vfy_A Phosphatidylinositol-3- 50.7 7.5 0.00026 29.0 2.0 29 335-363 11-43 (73)
125 2l43_A N-teminal domain from h 50.3 3.4 0.00012 32.2 0.1 50 333-384 23-77 (88)
126 2d8x_A Protein pinch; LIM doma 48.9 11 0.00039 27.1 2.8 40 335-386 5-44 (70)
127 1wee_A PHD finger family prote 48.7 2 6.8E-05 32.1 -1.5 46 336-382 17-66 (72)
128 2d8z_A Four and A half LIM dom 48.4 11 0.00039 27.1 2.7 39 335-385 5-43 (70)
129 1x62_A C-terminal LIM domain p 47.4 9.7 0.00033 28.3 2.3 38 335-384 15-52 (79)
130 2dar_A PDZ and LIM domain prot 47.3 10 0.00035 29.0 2.4 40 334-385 24-63 (90)
131 3i2d_A E3 SUMO-protein ligase 46.1 13 0.00046 36.6 3.6 50 335-385 249-300 (371)
132 2cu8_A Cysteine-rich protein 2 45.9 10 0.00035 27.9 2.2 41 334-386 8-49 (76)
133 1wyh_A SLIM 2, skeletal muscle 45.5 13 0.00043 26.9 2.6 40 335-386 5-46 (72)
134 2cur_A Skeletal muscle LIM-pro 45.4 12 0.0004 26.9 2.4 39 335-385 5-43 (69)
135 2cor_A Pinch protein; LIM doma 45.0 15 0.00052 27.3 3.0 40 335-386 15-54 (79)
136 2kwj_A Zinc finger protein DPF 44.7 1.4 4.8E-05 36.1 -3.2 47 337-383 60-109 (114)
137 1wig_A KIAA1808 protein; LIM d 44.2 20 0.00068 26.2 3.6 38 335-384 5-42 (73)
138 4fo9_A E3 SUMO-protein ligase 44.1 15 0.00052 36.1 3.6 48 335-384 215-265 (360)
139 1y02_A CARP2, FYVE-ring finger 43.9 3.2 0.00011 34.4 -1.1 45 335-383 19-67 (120)
140 1z2q_A LM5-1; membrane protein 43.8 11 0.00037 28.9 2.0 30 335-364 21-54 (84)
141 1x64_A Alpha-actinin-2 associa 43.6 17 0.00057 27.7 3.1 40 335-386 25-64 (89)
142 3t7l_A Zinc finger FYVE domain 43.5 11 0.00038 29.3 2.1 31 335-365 20-54 (90)
143 1nyp_A Pinch protein; LIM doma 43.5 10 0.00036 26.9 1.8 39 335-385 5-43 (66)
144 1x68_A FHL5 protein; four-and- 43.5 15 0.00051 27.0 2.7 38 335-384 5-46 (76)
145 1x6a_A LIMK-2, LIM domain kina 43.1 16 0.00056 27.1 3.0 39 335-385 15-53 (81)
146 1v6g_A Actin binding LIM prote 42.1 16 0.00055 27.1 2.8 40 335-386 15-54 (81)
147 1x4l_A Skeletal muscle LIM-pro 42.0 17 0.00059 26.2 2.9 39 335-385 5-47 (72)
148 1dvp_A HRS, hepatocyte growth 41.9 8.6 0.0003 35.0 1.4 29 335-363 161-193 (220)
149 2yw8_A RUN and FYVE domain-con 41.5 12 0.0004 28.6 1.9 30 335-364 19-52 (82)
150 2zet_C Melanophilin; complex, 41.4 55 0.0019 28.0 6.4 46 334-382 67-117 (153)
151 3zyq_A Hepatocyte growth facto 40.5 9.9 0.00034 34.8 1.6 30 335-364 164-197 (226)
152 1wfk_A Zinc finger, FYVE domai 40.4 11 0.00038 29.2 1.6 30 335-364 9-42 (88)
153 2l3k_A Rhombotin-2, linker, LI 40.2 39 0.0013 27.3 5.1 35 337-383 10-46 (123)
154 1x4u_A Zinc finger, FYVE domai 39.9 12 0.00042 28.5 1.8 28 335-362 14-45 (84)
155 2o35_A Hypothetical protein DU 39.4 11 0.00038 29.9 1.4 12 357-368 43-54 (105)
156 3fyb_A Protein of unknown func 39.3 11 0.00038 29.8 1.4 12 357-368 42-53 (104)
157 2dlo_A Thyroid receptor-intera 38.8 18 0.00062 26.8 2.6 39 335-385 15-53 (81)
158 1wew_A DNA-binding family prot 38.4 6.9 0.00024 29.6 0.1 47 335-382 16-72 (78)
159 2co8_A NEDD9 interacting prote 38.1 25 0.00086 26.3 3.3 41 334-386 14-55 (82)
160 1x4k_A Skeletal muscle LIM-pro 36.7 20 0.00068 25.8 2.5 40 335-386 5-46 (72)
161 1zfo_A LAsp-1; LIM domain, zin 35.9 17 0.00056 22.3 1.6 26 336-361 4-30 (31)
162 2jne_A Hypothetical protein YF 35.7 2 6.7E-05 34.1 -3.4 42 335-385 32-73 (101)
163 1x3h_A Leupaxin; paxillin fami 35.6 21 0.00072 26.3 2.5 40 335-386 15-54 (80)
164 2cuq_A Four and A half LIM dom 35.5 26 0.00088 25.8 3.0 39 335-385 15-53 (80)
165 3o7a_A PHD finger protein 13 v 35.3 4.7 0.00016 27.9 -1.2 41 340-381 8-51 (52)
166 1x63_A Skeletal muscle LIM-pro 33.3 27 0.00091 25.9 2.7 40 335-386 15-56 (82)
167 2dj7_A Actin-binding LIM prote 33.2 23 0.00079 26.4 2.4 39 334-384 14-53 (80)
168 1x61_A Thyroid receptor intera 33.0 26 0.00089 25.2 2.6 38 335-384 5-44 (72)
169 1g47_A Pinch protein; LIM doma 32.7 23 0.0008 25.8 2.3 41 334-386 10-52 (77)
170 2ku7_A MLL1 PHD3-CYP33 RRM chi 32.7 59 0.002 26.1 5.1 32 352-383 7-45 (140)
171 3mpx_A FYVE, rhogef and PH dom 32.3 9.5 0.00032 38.1 0.0 49 335-383 375-430 (434)
172 1iml_A CRIP, cysteine rich int 31.5 17 0.0006 26.6 1.4 37 337-385 2-39 (76)
173 2ku3_A Bromodomain-containing 31.1 31 0.001 25.5 2.7 47 333-381 14-65 (71)
174 1x4i_A Inhibitor of growth pro 30.6 10 0.00035 28.1 -0.1 45 335-383 6-56 (70)
175 2l4z_A DNA endonuclease RBBP8, 30.3 20 0.0007 29.3 1.7 38 335-384 61-99 (123)
176 1a7i_A QCRP2 (LIM1); LIM domai 30.2 15 0.0005 27.4 0.7 40 335-386 7-47 (81)
177 2egq_A FHL1 protein; LIM domai 29.6 29 0.001 25.3 2.4 39 335-385 15-58 (77)
178 2xb1_A Pygopus homolog 2, B-ce 28.8 21 0.00073 28.5 1.5 49 335-383 3-62 (105)
179 2d8y_A Eplin protein; LIM doma 28.4 37 0.0013 25.8 2.9 41 334-386 14-55 (91)
180 2d8v_A Zinc finger FYVE domain 28.0 22 0.00074 26.1 1.3 29 335-364 8-37 (67)
181 2ehe_A Four and A half LIM dom 28.0 39 0.0013 24.9 2.9 39 335-385 15-55 (82)
182 3f6q_B LIM and senescent cell 27.3 30 0.001 24.6 2.1 40 335-386 11-52 (72)
183 2jvx_A NF-kappa-B essential mo 24.2 20 0.00068 21.7 0.4 13 373-385 3-15 (28)
184 3mjh_B Early endosome antigen 23.7 13 0.00045 23.6 -0.5 17 335-351 5-21 (34)
185 2fiy_A Protein FDHE homolog; F 23.4 12 0.00041 36.1 -1.1 46 333-382 180-231 (309)
186 1m3v_A FLIN4, fusion of the LI 22.5 60 0.002 26.1 3.2 46 337-386 34-82 (122)
187 2jrp_A Putative cytoplasmic pr 21.9 5.4 0.00019 30.6 -3.1 40 336-384 3-42 (81)
188 1z60_A TFIIH basal transcripti 20.2 34 0.0012 24.5 1.0 40 336-379 16-58 (59)
No 1
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=4.9e-13 Score=102.16 Aligned_cols=51 Identities=31% Similarity=0.790 Sum_probs=43.3
Q ss_pred cCCCCCccCcccccC---CccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCCC
Q 013469 333 AYDDECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~---~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~~ 387 (442)
+.+..|+||++.+.. ++.+||||.||..|+.+|+.+ +.+||+||+++....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCccccCcC
Confidence 456789999999854 366899999999999999998 578999999987653
No 2
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=9.1e-13 Score=102.08 Aligned_cols=50 Identities=34% Similarity=0.810 Sum_probs=43.3
Q ss_pred cCCCCCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
+.+..|+||++.+..+..+ ||||.||..|+.+|+++ +.+||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV----RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH----CSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc----CCcCCCcCcccccc
Confidence 3567899999999876554 99999999999999998 57999999998654
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.34 E-value=2.8e-13 Score=98.70 Aligned_cols=47 Identities=36% Similarity=0.838 Sum_probs=41.1
Q ss_pred CCCCCccCcccccC---Ccccc-CcccchHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 334 YDDECAICREPMAK---AKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 334 ~~~~C~IC~e~~~~---~~~Lp-CgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
++.+|+||++++.. +..+| |||.||..|+++|+++ +.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCEeE
Confidence 46789999999987 56677 9999999999999987 589999999764
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=3e-13 Score=105.20 Aligned_cols=49 Identities=31% Similarity=0.712 Sum_probs=43.2
Q ss_pred cCCCCCccCcccccCC---ccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 333 AYDDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~---~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
+.+..|+||++++..+ +.+||||.||..|+.+|+++ +.+||+||+++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCcCCC
Confidence 3567899999999877 67899999999999999998 5899999998764
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.34 E-value=6.9e-13 Score=103.84 Aligned_cols=53 Identities=43% Similarity=0.899 Sum_probs=44.7
Q ss_pred cCCCCCccCcccccCC---ccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCCCcc
Q 013469 333 AYDDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRRE 389 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~---~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~~~~ 389 (442)
..+..|+||++.+..+ +.++|||.||..|+.+|+++ +.+||+||+++...+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCccCCcccC
Confidence 4577999999999866 44699999999999999987 58999999998765433
No 6
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=9.7e-13 Score=101.50 Aligned_cols=52 Identities=21% Similarity=0.432 Sum_probs=46.0
Q ss_pred CCCCCccCcccccCCccc-cCcccchHHHHHHHHHhCCCCCCCccccccCCcCCCcc
Q 013469 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRRE 389 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~L-pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~~~~ 389 (442)
.+..|+||++.+.+++.+ +|||.||..|+.+|++. +.+||+||+++...++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY----SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH----CSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc----CCcCCCcCcccCccccc
Confidence 466899999999999887 99999999999999988 58999999998766544
No 7
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.31 E-value=1.1e-12 Score=99.89 Aligned_cols=49 Identities=31% Similarity=0.754 Sum_probs=43.5
Q ss_pred cCCCCCccCcccccCC-ccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 333 AYDDECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~-~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
+.+..|+||++.+.++ +.+||||.||..|+.+|+++ +.+||.||+++..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ----NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH----SCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC----cCcCcCCChhhHh
Confidence 3467899999999886 77899999999999999998 5899999998854
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=5.9e-13 Score=105.35 Aligned_cols=48 Identities=38% Similarity=0.811 Sum_probs=40.3
Q ss_pred CCCCCccCcccccC--------------Cccc-cCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 334 YDDECAICREPMAK--------------AKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 334 ~~~~C~IC~e~~~~--------------~~~L-pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
.+++|+||++++.+ ...+ +|||.||..||++|+++ +.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ----NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT----CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh----CCCCCCcCCCcch
Confidence 46789999999865 3345 49999999999999998 5899999998754
No 9
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.31 E-value=5.3e-13 Score=107.94 Aligned_cols=48 Identities=35% Similarity=0.782 Sum_probs=42.1
Q ss_pred CCCCCccCcccccC---CccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 334 YDDECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 334 ~~~~C~IC~e~~~~---~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
.+..|+||++++.. .+.+||||.||..|+.+|+++ +.+||+||+++..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCccCCC
Confidence 46689999999977 567899999999999999987 5799999998754
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.30 E-value=8.7e-13 Score=96.01 Aligned_cols=47 Identities=36% Similarity=0.776 Sum_probs=41.1
Q ss_pred CCCCCccCcccccC----CccccCcccchHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 334 YDDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 334 ~~~~C~IC~e~~~~----~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
.+..|+||++++.+ +..++|||.||..|+.+|+++ +.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE----GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH----TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc----CCcCCCCCCcCC
Confidence 46789999999865 466899999999999999998 589999999764
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=7.2e-13 Score=100.87 Aligned_cols=49 Identities=33% Similarity=0.680 Sum_probs=42.7
Q ss_pred cCCCCCccCcccccCC-------ccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 333 AYDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~-------~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
..+..|+||++.+.++ +.++|||.||..|+.+|+++ +.+||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCccCc
Confidence 4567899999999865 67899999999999999998 5899999998753
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.30 E-value=7.4e-13 Score=101.52 Aligned_cols=49 Identities=33% Similarity=0.665 Sum_probs=43.4
Q ss_pred CCCCCccCcccccCC-------ccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~-------~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
.+..|+||++.+.++ ..++|||.||..|+.+|+++ +.+||+||+++...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc----CCCCCCCCCccChh
Confidence 467899999999876 67899999999999999998 58999999988654
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=3.9e-13 Score=103.46 Aligned_cols=50 Identities=26% Similarity=0.492 Sum_probs=44.9
Q ss_pred cCCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
..+..|+||++.+.+++.+||||.||..|+.+|+.+ +.+||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL----GKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC----SSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC----CCcCcCcCchhCHh
Confidence 346789999999999999999999999999999987 58999999988654
No 14
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.29 E-value=2.6e-12 Score=107.98 Aligned_cols=53 Identities=32% Similarity=0.659 Sum_probs=42.2
Q ss_pred CCCCCccCcccccCCc------------------cccCcccchHHHHHHHHHhCC-CCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAK------------------KLLCNHLFHLACLRSWLDQGL-NEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~------------------~LpCgH~FH~~Cl~~Wl~~~~-~~~~~CP~CR~~l~~~ 386 (442)
.++.|+||++++..+. .++|||.||..||.+|+.... ..+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3568999999996643 579999999999999996432 1257999999988654
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.27 E-value=1.2e-12 Score=98.01 Aligned_cols=49 Identities=33% Similarity=0.657 Sum_probs=43.0
Q ss_pred CCCCCccCcccccCC-------ccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~-------~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
++.+|+||++.+.++ ..++|||.||..|+.+|+++ +.+||+||+++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCccCCcc
Confidence 356899999999765 67899999999999999998 58999999988654
No 16
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.27 E-value=1.5e-12 Score=113.53 Aligned_cols=49 Identities=33% Similarity=0.764 Sum_probs=44.0
Q ss_pred CCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
.+..|+||++.+.+|+.+||||.||..|+..|+.+ +.+||+||+++...
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR----KIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT----CSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHc----CCcCCCCCCcCCCC
Confidence 35689999999999999999999999999999987 58999999988543
No 17
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.7e-12 Score=97.19 Aligned_cols=50 Identities=20% Similarity=0.533 Sum_probs=43.8
Q ss_pred CCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
.+..|+||++.+.+++.++|||.||..|+.+|+.++ +.+||+||+++..+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSS---SPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTS---SCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhC---cCCCCCCCcCCChh
Confidence 456899999999999999999999999999999643 57999999987654
No 18
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.24 E-value=3e-12 Score=106.44 Aligned_cols=47 Identities=34% Similarity=0.745 Sum_probs=40.8
Q ss_pred CCCCCccCcccccCC------------------ccccCcccchHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 334 YDDECAICREPMAKA------------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~------------------~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
.++.|+||++.+..+ ..++|||.||..||.+|+.+ +.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----CCcCcCCCCcce
Confidence 578999999999754 23799999999999999998 689999999864
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.24 E-value=4.6e-12 Score=98.30 Aligned_cols=51 Identities=25% Similarity=0.507 Sum_probs=43.9
Q ss_pred CCCCCccCcccccCCcccc-CcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~Lp-CgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
.+..|+||++.+.+++.++ |||.||..||.+|+++.. ..+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDVSP 65 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS--SSCCSSSCCSSCCT
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC--CCcCCCCCCcCCCc
Confidence 4568999999999999999 999999999999998731 36999999976443
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.4e-12 Score=100.07 Aligned_cols=48 Identities=23% Similarity=0.488 Sum_probs=43.7
Q ss_pred cCCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
+.+..|+||++.+.+++.++|||.||..|+.+|+++ ..+||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA----TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH----CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC----CCcCCCcCcccc
Confidence 346689999999999999999999999999999988 589999999875
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=4.4e-12 Score=97.79 Aligned_cols=53 Identities=23% Similarity=0.582 Sum_probs=44.8
Q ss_pred cCCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
..+..|+||++.+.+++.++|||.||..|+.+|++... ....||+||+++..+
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC-GFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSC-SCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCC-CCCCCCCCCCcCCcc
Confidence 35678999999999999999999999999999997321 147999999988654
No 22
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.21 E-value=5.9e-12 Score=98.45 Aligned_cols=50 Identities=22% Similarity=0.459 Sum_probs=44.7
Q ss_pred CCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
.+..|+||++.+.+++.++|||.||..||.+|+.++ +.+||.||+++...
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~---~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG---HKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT---CCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC---cCCCCCCcCCCChh
Confidence 467899999999999999999999999999999864 57999999988654
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.9e-12 Score=98.07 Aligned_cols=48 Identities=33% Similarity=0.771 Sum_probs=43.3
Q ss_pred CCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
.+..|+||++.+.+ +.+||||.||..|+.+|+.+ +.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR----HRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC----CSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC----cCcCCCcCCcccCC
Confidence 46789999999998 88999999999999999986 68999999988654
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=9.7e-12 Score=99.27 Aligned_cols=53 Identities=32% Similarity=0.576 Sum_probs=44.7
Q ss_pred cCCCCCccCcccccC----CccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 333 AYDDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~----~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
..+..|+||++.+.+ ++.++|||.||..|+.+|++++.. ..+||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~-~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN-GVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSS-CBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCC-CcCCCCCCCcccch
Confidence 456789999999988 788999999999999999997321 37999999987554
No 25
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.16 E-value=2.1e-11 Score=104.10 Aligned_cols=49 Identities=27% Similarity=0.557 Sum_probs=43.7
Q ss_pred CCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
.+..|+||++.+.+++.+||||.||..|+..|+..+ ..+||.||+++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ---VFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC---cCCCCCCCccCCC
Confidence 456899999999999999999999999999999853 4599999998854
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.14 E-value=1.3e-11 Score=101.58 Aligned_cols=50 Identities=34% Similarity=0.761 Sum_probs=44.2
Q ss_pred CCCCCccCcccccCCcc-ccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~-LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
.+..|+||++.+.+++. ++|||.||..||.+|+.++ +.+||+||+++...
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRAPLQLR 71 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT---CSBCTTTCCBCCGG
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC---cCCCCCCCCcCCHH
Confidence 35689999999999998 9999999999999999983 26999999998543
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.6e-11 Score=90.79 Aligned_cols=46 Identities=26% Similarity=0.666 Sum_probs=39.9
Q ss_pred cCCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCcccc
Q 013469 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~C 379 (442)
+.+..|+||++.+.+++.++|||.||..|+.+|+++.. ...+||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC-GFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS-SCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC-CCCcCcCC
Confidence 45678999999999999999999999999999998521 14689998
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=4.1e-11 Score=94.71 Aligned_cols=54 Identities=30% Similarity=0.522 Sum_probs=45.5
Q ss_pred cCCCCCccCcccccCCccccCcccchHHHHHHHHHhC--CCCCCCccccccCCcCC
Q 013469 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG--LNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~--~~~~~~CP~CR~~l~~~ 386 (442)
..+..|+||++.+.+++.+||||.||..|+.+|+.++ ......||.||+++...
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 3567899999999999999999999999999999871 11147999999998754
No 29
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.13 E-value=2.2e-11 Score=98.31 Aligned_cols=50 Identities=26% Similarity=0.537 Sum_probs=43.6
Q ss_pred cCCCCCccCcccccCCcccc-CcccchHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 333 AYDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~Lp-CgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
..+..|+||++.+.+|+.+| |||.||..||.+|+.++. ...||+||+++.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT--TCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC--CCcCcCCCCcCC
Confidence 35678999999999999999 999999999999998632 369999999863
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.13 E-value=3.5e-11 Score=95.07 Aligned_cols=54 Identities=30% Similarity=0.591 Sum_probs=45.8
Q ss_pred cCCCCCccCcccccCCccccCcccchHHHHHHHHHhCC--CCCCCccccccCCcCC
Q 013469 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGL--NEMYSCPTCRKPLFVG 386 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~--~~~~~CP~CR~~l~~~ 386 (442)
..+..|+||++.+.+++.++|||.||..|+.+|+.+.. .....||.||+++...
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 35678999999999999999999999999999998831 1147899999998654
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=2.3e-11 Score=91.69 Aligned_cols=50 Identities=24% Similarity=0.610 Sum_probs=42.0
Q ss_pred CCCCccCcc-cccCCc----cccCcccchHHHHHHHHHhCCCCCCCccccccCCcCCC
Q 013469 335 DDECAICRE-PMAKAK----KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (442)
Q Consensus 335 ~~~C~IC~e-~~~~~~----~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~~ 387 (442)
+..|+||++ .+.++. .++|||.||..|+.+|+.++ +.+||.||+++...+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG---AGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT---SSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC---CCcCCCCCCcccccc
Confidence 568999999 787774 47999999999999998764 478999999986543
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.13 E-value=1e-11 Score=97.17 Aligned_cols=54 Identities=24% Similarity=0.476 Sum_probs=45.4
Q ss_pred cCCCCCccCcccccCCccccCcccchHHHHHHHHHhCC---CCCCCccccccCCcCC
Q 013469 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGL---NEMYSCPTCRKPLFVG 386 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~---~~~~~CP~CR~~l~~~ 386 (442)
..+..|+||++.+.+++.+||||.||..|+.+|+.++. .....||.||+++...
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 34678999999999999999999999999999998631 1247899999998654
No 33
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.10 E-value=8.5e-12 Score=105.30 Aligned_cols=47 Identities=34% Similarity=0.745 Sum_probs=1.1
Q ss_pred CCCCCccCcccccCC------------------ccccCcccchHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 334 YDDECAICREPMAKA------------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~------------------~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
.++.|+||++++..+ ..++|+|.||..||.+|+++ +.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREWE 111 (117)
T ss_dssp CC-------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc----CCcCCCCCCeee
Confidence 467999999999752 12599999999999999998 589999999864
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.09 E-value=3.6e-11 Score=100.14 Aligned_cols=50 Identities=22% Similarity=0.512 Sum_probs=45.1
Q ss_pred cCCCCCccCcccccCCccc-cCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 333 AYDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~L-pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
..+..|+||++.+.+++.+ +|||.||..|+.+|+.+ +.+||.||+++...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET----SKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS----CSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh----CCcCcCCCcccccc
Confidence 3467899999999999998 99999999999999987 58999999998764
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.09 E-value=2.5e-11 Score=99.38 Aligned_cols=48 Identities=29% Similarity=0.549 Sum_probs=43.4
Q ss_pred CCCCCccCcccccCCccc-cCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~L-pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
.+..|+||++.+.+++.+ +|||.||..|+.+|+.+ +.+||.||+++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY----KTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC----CCCCCCCCCcCCh
Confidence 457899999999999888 99999999999999987 5899999998765
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=4e-11 Score=87.99 Aligned_cols=46 Identities=26% Similarity=0.761 Sum_probs=39.2
Q ss_pred cCCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCcccc
Q 013469 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~C 379 (442)
..+..|+||++.+.+++.++|||.||..|+.+|+.+.. .+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLE-RDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSC-CSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcC-CCCCCCCC
Confidence 35678999999999999999999999999999976411 15799998
No 37
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=1.3e-10 Score=97.07 Aligned_cols=51 Identities=27% Similarity=0.576 Sum_probs=43.9
Q ss_pred CCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
+..|+||++.+.+++.+||||.||..|+.+|+.++.. ..+||.||+++...
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~-~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKG-PSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSS-SCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCC-CCCCcCCCCcCCHh
Confidence 4589999999999999999999999999999987421 25899999988654
No 38
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.02 E-value=1.3e-10 Score=92.70 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=44.5
Q ss_pred CCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
.+..|+||.+.|.+|+.++|||.|++.||.+|+.+ +.+||.||+++...
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN----SPTDPFNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCGG
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhc----CCCCCCCcCCCChH
Confidence 46789999999999999999999999999999997 58999999987543
No 39
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.02 E-value=2e-11 Score=102.82 Aligned_cols=48 Identities=29% Similarity=0.717 Sum_probs=43.2
Q ss_pred CCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
+..|+||++.+.+++.++|||.||..|+.+|+.++ +.+||.||+++..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA---SLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT---TSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC---cCCCCCCCcccCc
Confidence 55899999999999999999999999999999764 4799999998854
No 40
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.5e-10 Score=91.26 Aligned_cols=52 Identities=25% Similarity=0.619 Sum_probs=42.1
Q ss_pred cCCCCCccCcccccC--CccccCc-----ccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 333 AYDDECAICREPMAK--AKKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~--~~~LpCg-----H~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
..++.|.||++++++ +..+||+ |.||..||++|+.++. ..+||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~--~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD--TRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC--CSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC--CCCCCCCCCeeecC
Confidence 356789999998853 4557996 9999999999998741 25999999998654
No 41
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.02 E-value=7e-11 Score=99.58 Aligned_cols=50 Identities=32% Similarity=0.633 Sum_probs=44.7
Q ss_pred CCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
.+..|+||++.+.+++.++|||.||..|+.+|+..+ +.+||+||+++...
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVM---GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC---cCcCCCCCCCCCHh
Confidence 467899999999999999999999999999999874 47999999988654
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.01 E-value=7.9e-11 Score=100.92 Aligned_cols=50 Identities=34% Similarity=0.683 Sum_probs=44.3
Q ss_pred CCCCCccCcccccCC-------ccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCCC
Q 013469 334 YDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~-------~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~~ 387 (442)
++.+|+||++.+.++ +.++|||.||..|+.+|+++ +.+||+||+++....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT----CSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh----CCCCCCCCCcCcccc
Confidence 467899999999877 78899999999999999988 579999999986654
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.01 E-value=1.1e-10 Score=103.20 Aligned_cols=50 Identities=26% Similarity=0.518 Sum_probs=44.2
Q ss_pred CCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
.+..|+||++.+.+++.+||||.||..|+..|+..+ ..+||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ---VFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC---CCcCCCCCccCCCC
Confidence 356899999999999999999999999999999873 35899999988654
No 44
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=2.5e-10 Score=88.28 Aligned_cols=56 Identities=18% Similarity=0.421 Sum_probs=44.3
Q ss_pred cCCCCCccCcccccCCccc-cCcccchHHHHHHHHHhCCCCCCCccccccCCcCCCccc
Q 013469 333 AYDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREI 390 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~L-pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~~~~~ 390 (442)
+..+.|+||++.+...++- .|+|.||..|+.+|+++.. +.+||.||+++....++.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~w~~~~~~~ 69 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIPKS 69 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS--SCCCTTTCSCCCSCCCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC--CCCCCCCcCcCCCCCCCC
Confidence 3457899999999765433 8999999999999998732 279999999987654443
No 45
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.99 E-value=4.4e-10 Score=88.07 Aligned_cols=52 Identities=25% Similarity=0.482 Sum_probs=41.2
Q ss_pred cCCCCCccCccccc--CCcccc--CcccchHHHHHHHHHhCCCCCCCccccccCCcCCC
Q 013469 333 AYDDECAICREPMA--KAKKLL--CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (442)
Q Consensus 333 ~~~~~C~IC~e~~~--~~~~Lp--CgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~~ 387 (442)
+++.+|+||++++. +.+.+| |||.||..|+..+++.+ ...||.||+++....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~---~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE---NGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS---CSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC---CCCCCCCCCccCCCc
Confidence 34678999999985 334445 99999999999988653 579999999986653
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.98 E-value=1.4e-10 Score=98.14 Aligned_cols=50 Identities=26% Similarity=0.486 Sum_probs=44.0
Q ss_pred CCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
.+..|+||++.+.+++.++|||.||..|+.+|+.++ ..+||+||+++...
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA---GHKCPVDNEILLEN 66 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCGG
T ss_pred CCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC---CCCCCCCCCCcCHH
Confidence 456899999999999999999999999999999884 34999999988653
No 47
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.97 E-value=1.8e-10 Score=103.16 Aligned_cols=48 Identities=33% Similarity=0.672 Sum_probs=42.8
Q ss_pred CCCCccCcccccCCccc-cCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~L-pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
+..|+||++.+.+++.+ +|||.||..|+.+|+..+ +..||+||.++..
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG---NKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT---CCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC---cCCCCCCCCcCCC
Confidence 44899999999999887 999999999999999964 4789999999854
No 48
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.97 E-value=6.2e-10 Score=107.35 Aligned_cols=49 Identities=16% Similarity=-0.026 Sum_probs=43.9
Q ss_pred CCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
.+..|+||.+.|.+|+.+||||.||+.||..|+.++ +.+||.||.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~---~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV---GHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT---CSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC---CCCCcCCCCCCch
Confidence 467899999999999999999999999999999874 3569999998854
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.97 E-value=2.1e-10 Score=94.36 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=44.3
Q ss_pred CCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
.+..|+||.+.|.+|+.+||||.|++.||..|+.. +.+||.||+++...
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN----SPTDPFNRQTLTES 76 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS----CSBCSSSCCBCCTT
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc----CCCCCCCCCCCChh
Confidence 46689999999999999999999999999999986 58999999987643
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=1.7e-10 Score=84.51 Aligned_cols=46 Identities=28% Similarity=0.554 Sum_probs=40.1
Q ss_pred CCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
++..|+||++.+.+++.+||||.||..|+.+| ...||+||+++...
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~-------~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS-------GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS-------SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC-------CCCCCcCCcEeecC
Confidence 46689999999999999999999999999772 47999999987643
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.93 E-value=2.4e-10 Score=97.88 Aligned_cols=50 Identities=32% Similarity=0.659 Sum_probs=43.8
Q ss_pred cCCCCCccCcccccCC-------ccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 333 AYDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~-------~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
+.+..|+||++.++++ +.++|||.||..|+.+|+++ +.+||+||+++..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCCCCCCcCChh
Confidence 4567899999999765 67799999999999999998 58999999998654
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.93 E-value=3.6e-10 Score=92.57 Aligned_cols=49 Identities=16% Similarity=0.038 Sum_probs=44.3
Q ss_pred CCCCCccCcccccCCccccCc-ccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~LpCg-H~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
.+..|+||++.|++|+.++|| |.|++.||..|+.+ +.+||.||+++...
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~----~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS----DQTDPFNRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT----SCBCTTTCSBCCTT
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh----CCCCCCCCCCCChh
Confidence 467899999999999999999 99999999999987 57999999987643
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.92 E-value=3.9e-10 Score=84.95 Aligned_cols=48 Identities=23% Similarity=0.556 Sum_probs=42.0
Q ss_pred CCCCCccCcccccCCccc--cCccc-chHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 334 YDDECAICREPMAKAKKL--LCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~L--pCgH~-FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
.+..|+||++...++..+ ||||. ||..|+.+|.++ +..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR----NKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT----TCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc----CCcCCCcCcchhc
Confidence 466899999999888866 99999 899999999987 5799999998743
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.91 E-value=4.1e-10 Score=84.55 Aligned_cols=49 Identities=22% Similarity=0.507 Sum_probs=42.3
Q ss_pred cCCCCCccCcccccCCccc--cCccc-chHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 333 AYDDECAICREPMAKAKKL--LCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~L--pCgH~-FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
+.+..|.||++...++..+ ||||. ||..|..+|.++ +..||+||+++..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA----GASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT----TCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh----CCcCCCcCchhhc
Confidence 3467899999998887777 99998 999999999987 4799999998743
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.90 E-value=6e-10 Score=112.02 Aligned_cols=49 Identities=33% Similarity=0.611 Sum_probs=43.7
Q ss_pred CCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
+..|+||++.+.+++.+||||.||..|+.+|+.+. +.+||+||+++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~---~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE---GQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT---CSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC---CCCCCCCCCccCCc
Confidence 46899999999999999999999999999999843 58999999988654
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.87 E-value=3e-10 Score=99.31 Aligned_cols=50 Identities=24% Similarity=0.510 Sum_probs=43.8
Q ss_pred cCCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
+.+..|+||++.+.+++.++|||.||..||.+|+.++ ..+||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG---PQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS---CEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC---CCCCCCCCCcccc
Confidence 3466899999999999999999999999999999874 3599999998643
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.81 E-value=1e-09 Score=92.69 Aligned_cols=46 Identities=24% Similarity=0.648 Sum_probs=41.4
Q ss_pred CCCCCccCcccccCCccc-cCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~L-pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
.+..|+||++.+.+++.+ +|||.||..|+..|+. ..||.||+++..
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG------TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT------TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc------CCCcCCCCcCcc
Confidence 356899999999999999 9999999999999986 589999998743
No 58
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.79 E-value=1.9e-09 Score=97.58 Aligned_cols=50 Identities=16% Similarity=-0.034 Sum_probs=43.9
Q ss_pred CCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
.+..|+||.+.|.+|+.+||||.|++.||..|+..+ +.+||.||.++...
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~---~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV---GHFDPVTRSPLTQD 154 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCGG
T ss_pred HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhC---CCCCCCCcCCCChh
Confidence 356899999999999999999999999999999874 24799999987543
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.73 E-value=1.8e-09 Score=83.65 Aligned_cols=44 Identities=23% Similarity=0.489 Sum_probs=39.2
Q ss_pred CCCCCccCcccccCCccccCccc-chHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 334 YDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~LpCgH~-FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
.+..|+||++.+.+++.+||||. ||..|+..| ..||+||+++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC--------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC--------ccCCCcCcCccC
Confidence 35689999999999999999999 999999887 489999998754
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=3.5e-09 Score=85.93 Aligned_cols=51 Identities=22% Similarity=0.445 Sum_probs=42.2
Q ss_pred CCCCCccCcccccCCcccc-CcccchHHHHHHHHHhCC--CCCCCccc--cccC-Cc
Q 013469 334 YDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGL--NEMYSCPT--CRKP-LF 384 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~Lp-CgH~FH~~Cl~~Wl~~~~--~~~~~CP~--CR~~-l~ 384 (442)
.+..|+||++.|.+|+.++ |||.|++.||.+|+.++. ....+||. |+.. +.
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 3568999999999999996 999999999999998631 12369999 9876 43
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.71 E-value=4e-09 Score=94.81 Aligned_cols=50 Identities=26% Similarity=0.486 Sum_probs=44.1
Q ss_pred CCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
.+..|+||++.+.+|+.++|||.||..|+.+|+.++ +.+||+||.++...
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA---GHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC---CCCCCCCccCcchh
Confidence 456899999999999999999999999999999874 35999999988653
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=8.8e-09 Score=78.43 Aligned_cols=46 Identities=22% Similarity=0.594 Sum_probs=40.0
Q ss_pred cCCCCCccCcccccCCccccCccc-chHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 333 AYDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~LpCgH~-FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
+.+..|.||++...+++.+||||. ||..|+.. ...||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~--------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY--------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH--------CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc--------CCCCCCCCcchhce
Confidence 456789999999999999999999 99999973 47999999988653
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.5e-08 Score=78.60 Aligned_cols=44 Identities=23% Similarity=0.533 Sum_probs=38.3
Q ss_pred CCCCccCcccccCCccccCccc-chHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 335 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~-FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
+..|+||++.+.+++.+||||. ||..|+.+ ...||+||+++...
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~--------~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA--------VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH--------CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC--------CCCCccCCceecCc
Confidence 4589999999999999999999 99999953 47999999988553
No 64
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.55 E-value=2.1e-08 Score=98.20 Aligned_cols=53 Identities=23% Similarity=0.531 Sum_probs=40.1
Q ss_pred CCCCCccCcccccCC--------ccccCcccchHHHHHHHHHhCCCC-------CCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKA--------KKLLCNHLFHLACLRSWLDQGLNE-------MYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~--------~~LpCgH~FH~~Cl~~Wl~~~~~~-------~~~CP~CR~~l~~~ 386 (442)
...+|+||++.+.+. ...+|||.||..|+.+|+++.... ..+||.||+++..+
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 456899999988652 224799999999999999863110 14799999988654
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.48 E-value=5.7e-08 Score=92.19 Aligned_cols=50 Identities=22% Similarity=0.491 Sum_probs=42.8
Q ss_pred CCCCccCcccccCCccc-cCcccchHHHHHHHHHhCCCCCCCccc--cccCCcCC
Q 013469 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPT--CRKPLFVG 386 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~L-pCgH~FH~~Cl~~Wl~~~~~~~~~CP~--CR~~l~~~ 386 (442)
+..|+||++.|.+|+.. .|||.||+.||.+|+++++ ..+||. ||+.+...
T Consensus 181 el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~--~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 181 ELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYT--TRDCPQAACSQVVSMR 233 (267)
T ss_dssp CSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCS--CEECSGGGCSCEECGG
T ss_pred eeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCC--CCCCCcccccCcCchh
Confidence 55799999999999985 9999999999999998631 368999 99987554
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.48 E-value=8.3e-08 Score=71.12 Aligned_cols=50 Identities=24% Similarity=0.494 Sum_probs=39.8
Q ss_pred cCCCCCccCcccccCCccccCc--c---cchHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 333 AYDDECAICREPMAKAKKLLCN--H---LFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~LpCg--H---~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
+.++.|.||+++..++..+||. | .||..|+.+|+..+. +.+||+||.++.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~--~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR--NTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT--CSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC--CCccCCCCCeee
Confidence 3467899999987666667865 4 899999999998632 479999998764
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.44 E-value=8.5e-08 Score=71.31 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=43.4
Q ss_pred CCCCccCcccccCCccc-cCcccchHHHHHHHHHhCCCCCCCccccccCCcCCC
Q 013469 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~L-pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~~ 387 (442)
...|+||.+.|++|+.+ +|||+|.+.||.+|+++ +.+||.+++++...+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~----~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD----TGNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH----HSBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh----CCCCcCCcCCCChhh
Confidence 35799999999999999 99999999999999987 467999999986654
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.40 E-value=5.5e-08 Score=76.24 Aligned_cols=44 Identities=25% Similarity=0.470 Sum_probs=38.5
Q ss_pred CCCCccCcccccCCccccCccc-chHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 335 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~-FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
+..|+||++...+++.+||||. ||..|+.+| ..||+||+++...
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL--------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC--------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc--------CcCCCCCchhhCe
Confidence 4589999999999999999999 999998653 4999999998654
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.30 E-value=3.4e-07 Score=73.92 Aligned_cols=49 Identities=24% Similarity=0.612 Sum_probs=38.7
Q ss_pred CCCCCccCcccccCCccc---cCcccchHHHHHHHHHhC----CCCCCCccc--cccC
Q 013469 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQG----LNEMYSCPT--CRKP 382 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~----~~~~~~CP~--CR~~ 382 (442)
...+|+||++++..+..+ +|||.||..|++++++.+ ......||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 356899999998876543 799999999999998752 111358999 9987
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.26 E-value=1.2e-07 Score=94.60 Aligned_cols=44 Identities=25% Similarity=0.569 Sum_probs=39.4
Q ss_pred CCCCCccCcccccCCccccCccc-chHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 334 YDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~LpCgH~-FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
.+..|+||++.+.+++.+||||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL--------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC--------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC--------CcCCCCCCCccC
Confidence 46789999999999999999999 999999876 489999998754
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.00 E-value=2.5e-06 Score=68.69 Aligned_cols=47 Identities=26% Similarity=0.590 Sum_probs=39.1
Q ss_pred CCccCcccccC-CccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 337 ECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 337 ~C~IC~e~~~~-~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
-|.+|--++.. ++.+||+|+||.+|...|.+++ .++||.||.++..-
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~---~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG---DKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT---CCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc---CCCCcCcCCeeeee
Confidence 48888888765 4667999999999999999774 58999999998553
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.75 E-value=1.7e-05 Score=74.94 Aligned_cols=53 Identities=19% Similarity=0.471 Sum_probs=42.4
Q ss_pred CCCCccCcccccCCccc-cCcccchHHHHHHHHHhCCCCCCCccccccCCcCCCcc
Q 013469 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRRE 389 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~L-pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~~~~ 389 (442)
-..|.||.+-...+++= .|+|.||..|+..|+++.. +..||.|+.+++...|.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~--~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS--SCBCTTTCCBCCSCCCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC--CCCCCCCCCCCCCCCCC
Confidence 45799999998776544 3999999999999997632 35999999998766544
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.92 E-value=0.031 Score=44.87 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=26.4
Q ss_pred CCCCccCccc-ccCCcc--ccCcccchHHHHHHH
Q 013469 335 DDECAICREP-MAKAKK--LLCNHLFHLACLRSW 365 (442)
Q Consensus 335 ~~~C~IC~e~-~~~~~~--LpCgH~FH~~Cl~~W 365 (442)
+..|.||.++ ..++++ ++|+|.||..|++.+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 5689999976 567777 899999999999983
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.50 E-value=0.035 Score=43.89 Aligned_cols=47 Identities=30% Similarity=0.556 Sum_probs=37.5
Q ss_pred CCCCccCcccccCCccccCc-ccchHHHHHHHHHhCCCCCCCccccccCCcCCC
Q 013469 335 DDECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCg-H~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~~ 387 (442)
-..|-.|+-..+ -.+.|+ |..|..|+...+.. +..||+|..+++.+.
T Consensus 28 ~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~----SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 28 PQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSV----SNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSS----SSEETTTTEECCCCS
T ss_pred cccChhhccccC--CeeeecchhhHHHHHHHHHhh----ccCCcccCCcCCcce
Confidence 356999997643 344665 99999999998887 689999999997763
No 75
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=93.28 E-value=0.054 Score=41.93 Aligned_cols=32 Identities=28% Similarity=0.711 Sum_probs=24.0
Q ss_pred cCCCCCccCcccccCCcccc---CcccchHHHHHHH
Q 013469 333 AYDDECAICREPMAKAKKLL---CNHLFHLACLRSW 365 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~Lp---CgH~FH~~Cl~~W 365 (442)
..|+.|.||-. +....++| |+-+||..|+++-
T Consensus 13 ~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-ccccceeccccccccccHhhcccc
Confidence 46889999973 23344554 7899999999985
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.60 E-value=0.06 Score=40.09 Aligned_cols=47 Identities=21% Similarity=0.444 Sum_probs=34.7
Q ss_pred cCCCCCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCccccccC
Q 013469 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (442)
..+..|.||.+. ...+ .|...||..|++..+.......-.||.|+..
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 346789999864 2333 6889999999998887644334689999764
No 77
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.05 E-value=0.18 Score=55.93 Aligned_cols=48 Identities=15% Similarity=0.037 Sum_probs=43.0
Q ss_pred CCCCccCcccccCCccccCc-ccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 335 DDECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCg-H~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
+..|+|-.+-|.+|+.+|.| +.+-+.+|.+|+.+ +.+||.=|+++...
T Consensus 891 ~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~----~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 891 EFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS----DSTDPFNRMPLKLE 939 (968)
T ss_dssp GGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCGG
T ss_pred HhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc----CCCCCCCCCCCCcc
Confidence 45799999999999999998 58999999999987 57999999988654
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=88.29 E-value=0.092 Score=38.36 Aligned_cols=48 Identities=27% Similarity=0.639 Sum_probs=33.0
Q ss_pred cCCCCCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCccccccCC
Q 013469 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l 383 (442)
..++.|.+|.+. ...+ .|...||..|+..-+.+.....-.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 457789999864 2233 58889999999865544322345799998653
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=88.20 E-value=0.049 Score=41.44 Aligned_cols=51 Identities=18% Similarity=0.423 Sum_probs=33.3
Q ss_pred CCCCCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
.+..|.+|...-.....+ .|.-.||..|+..-........-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345699998775432233 588899999986543322222468999987653
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.42 E-value=0.23 Score=34.55 Aligned_cols=45 Identities=36% Similarity=0.805 Sum_probs=30.3
Q ss_pred CCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCcccccc
Q 013469 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (442)
Q Consensus 337 ~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (442)
.|.+|.+.-+....+ .|...||..|+..=+.+.....-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998764333333 688899999997644443223457999975
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.44 E-value=0.19 Score=36.58 Aligned_cols=46 Identities=26% Similarity=0.780 Sum_probs=32.7
Q ss_pred cCCCCCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCcccccc
Q 013469 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (442)
..++.|.+|.+. ...+ .|...||..|+..-+.+.....-.||.|++
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 356789999874 2333 678899999998755443333568999975
No 82
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=84.79 E-value=0.11 Score=47.52 Aligned_cols=48 Identities=29% Similarity=0.517 Sum_probs=34.6
Q ss_pred cCCCCCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCccccccCC
Q 013469 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l 383 (442)
..++.|.+|.+.- ..+ .|...||..|+.+-+...+...-.||.|+..-
T Consensus 5 ~~~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGG---DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCE---EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC---ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4577899998652 222 58899999999876655333346899998754
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=84.68 E-value=0.31 Score=43.52 Aligned_cols=47 Identities=30% Similarity=0.620 Sum_probs=33.9
Q ss_pred CCCCCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCccccccCC
Q 013469 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l 383 (442)
+++.|.+|.+. +..+ .|.-.||..|+.+-+.......-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 57789999865 2233 58889999998776655333346899998754
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.24 E-value=0.12 Score=36.98 Aligned_cols=46 Identities=33% Similarity=0.832 Sum_probs=31.7
Q ss_pred cCCCCCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCcccccc
Q 013469 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (442)
..++.|.+|.+. ...+ .|...||..|+.+-+.......-.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 457789999975 2233 688899999998655443223457999864
No 85
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.75 E-value=0.47 Score=37.27 Aligned_cols=47 Identities=28% Similarity=0.629 Sum_probs=33.6
Q ss_pred cCCCCCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCccccccC
Q 013469 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (442)
..++.|.+|.+. ...+ .|.-.||..|+.+=+.+-....-.||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 457789999975 2333 5778899999977665433334579999864
No 86
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=80.00 E-value=0.12 Score=37.57 Aligned_cols=47 Identities=32% Similarity=0.829 Sum_probs=33.0
Q ss_pred CCCCCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCccccccCC
Q 013469 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l 383 (442)
.++.|.+|.+. ...+ .|...||..|+.+-+.......-.||.|+...
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 57789999975 2333 68889999999865544333345799997654
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=78.89 E-value=0.4 Score=39.13 Aligned_cols=48 Identities=23% Similarity=0.611 Sum_probs=31.7
Q ss_pred cCCCCCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCccccc
Q 013469 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCR 380 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR 380 (442)
.+++.|.+|.+.-+....+ .|+..||..|+...........-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3578899998875432223 78899999999876542111235677764
No 88
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=78.77 E-value=0.26 Score=36.06 Aligned_cols=49 Identities=27% Similarity=0.655 Sum_probs=31.9
Q ss_pred CCCCCccCcccccCCc-cc---cCcccchHHHHHHHHHhC-CCCCCCccccccC
Q 013469 334 YDDECAICREPMAKAK-KL---LCNHLFHLACLRSWLDQG-LNEMYSCPTCRKP 382 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~-~L---pCgH~FH~~Cl~~Wl~~~-~~~~~~CP~CR~~ 382 (442)
++..|++|..+..+.. .+ .|...||..|+.---... ......||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4667999998875322 22 688999999975322110 1235789999763
No 89
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=78.77 E-value=0.45 Score=42.81 Aligned_cols=49 Identities=27% Similarity=0.510 Sum_probs=33.0
Q ss_pred CCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCC
Q 013469 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l 383 (442)
++.|.+|.+.-+--.--.|...||..|+.+=+.+.....-.||.|+..-
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 5789999976322122268889999999765544333345799998753
No 90
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=78.52 E-value=0.94 Score=33.98 Aligned_cols=44 Identities=25% Similarity=0.700 Sum_probs=29.2
Q ss_pred CCCCccCcccccCCccc---c--Cc-ccchHHHHHHHHHhCCCCCCCccccccC
Q 013469 335 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~L---p--Cg-H~FH~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (442)
+..| ||...-. ...+ . |. ..||..|+. +.......-.||.|+..
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 4567 8988543 3333 3 66 689999997 44433345789999864
No 91
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=76.54 E-value=0.33 Score=35.87 Aligned_cols=47 Identities=34% Similarity=0.767 Sum_probs=32.4
Q ss_pred cCCCCCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCccccccC
Q 013469 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (442)
..++.|.+|.+. ...+ .|...||..|+..-+.......-.||.|+..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 357789999975 2233 6888999999986554432234579999753
No 92
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=76.30 E-value=1.5 Score=37.46 Aligned_cols=49 Identities=22% Similarity=0.473 Sum_probs=33.5
Q ss_pred cCCCCCccCcccccCCccccCcccchHHHHHHHHHh-------CCCCCCCcccccc
Q 013469 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQ-------GLNEMYSCPTCRK 381 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~-------~~~~~~~CP~CR~ 381 (442)
..++.|.+|.+.-+--.-=.|...||..|+..-+.. .....-.||.|+.
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 467899999986321111178899999999976631 1223568999974
No 93
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=76.26 E-value=3 Score=31.84 Aligned_cols=45 Identities=24% Similarity=0.526 Sum_probs=33.7
Q ss_pred CCCCccCcccccCCccccC----cccchHHHHHHHHHhCC-CCCCCcccc
Q 013469 335 DDECAICREPMAKAKKLLC----NHLFHLACLRSWLDQGL-NEMYSCPTC 379 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpC----gH~FH~~Cl~~Wl~~~~-~~~~~CP~C 379 (442)
...|.+|.|.+++..-..| +|.||..|-+.-++++. ...-.||.=
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 4579999999999877766 49999999999987642 112346654
No 94
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=75.60 E-value=1.2 Score=39.82 Aligned_cols=49 Identities=18% Similarity=0.474 Sum_probs=31.9
Q ss_pred CCCCccCcccccCCc----cc---cCcccchHHHHHH------HHHhC-CCCCCCccccccCC
Q 013469 335 DDECAICREPMAKAK----KL---LCNHLFHLACLRS------WLDQG-LNEMYSCPTCRKPL 383 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~----~L---pCgH~FH~~Cl~~------Wl~~~-~~~~~~CP~CR~~l 383 (442)
+..|+||...+.+.. .+ .|...||..|..- -+..- ....-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 467999999887653 23 5889999999632 11100 00147999998753
No 95
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.30 E-value=1.3 Score=34.91 Aligned_cols=43 Identities=26% Similarity=0.722 Sum_probs=28.2
Q ss_pred CCCccCcccccCCccc---c--Cc-ccchHHHHHHHHHhCCCCCCCccccccC
Q 013469 336 DECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (442)
Q Consensus 336 ~~C~IC~e~~~~~~~L---p--Cg-H~FH~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (442)
..| ||.+... ...+ . |. ..||..|+. +.......-.||.|+..
T Consensus 37 ~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 37 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp BCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred cEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 346 9998643 2233 2 66 689999997 44433335789999864
No 96
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.70 E-value=0.3 Score=38.73 Aligned_cols=49 Identities=24% Similarity=0.522 Sum_probs=33.1
Q ss_pred CCCCCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCccccccC
Q 013469 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (442)
++..|.||.+.-.....+ .|...||..|+.+=+..-....-.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 466899999864433333 6889999999975444322224579999764
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=71.22 E-value=0.8 Score=37.49 Aligned_cols=45 Identities=31% Similarity=0.692 Sum_probs=30.6
Q ss_pred CCccCcccccCC-ccc---cCcccchHHHHHHHHHhCCCCCCCcccccc
Q 013469 337 ECAICREPMAKA-KKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (442)
Q Consensus 337 ~C~IC~e~~~~~-~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (442)
.|.+|.+.-.+. ..+ .|...||..|+.+-+..-....-.||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688888753332 333 588999999997666553333458999985
No 98
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.67 E-value=0.81 Score=34.96 Aligned_cols=47 Identities=30% Similarity=0.714 Sum_probs=31.0
Q ss_pred CCCCccCcccccCCccc---cCcccchHHHHHHHHHhCCCC-CCCcccccc
Q 013469 335 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRK 381 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~-~~~CP~CR~ 381 (442)
+..|.+|...-.....+ .|...||..|+.+-+.+-... .-.||.|+.
T Consensus 26 ~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 34688888653334444 688999999998655543222 357999975
No 99
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=68.89 E-value=1 Score=41.66 Aligned_cols=47 Identities=32% Similarity=0.690 Sum_probs=27.2
Q ss_pred CCCccCcccccCCccc---cCcccchHHHHHHHHHhCCCC-CCCccccccC
Q 013469 336 DECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRKP 382 (442)
Q Consensus 336 ~~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~-~~~CP~CR~~ 382 (442)
..|.+|...-.....+ .|...||..|+.+-+.+-+.. .-.||.|+..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3577887643333333 688999999998766543322 3579999753
No 100
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=68.77 E-value=3 Score=35.02 Aligned_cols=50 Identities=22% Similarity=0.422 Sum_probs=32.6
Q ss_pred cCCCCCccCcccccCCccccCcccchHHHHHHH-----HHhC--CCCCCCccccccC
Q 013469 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSW-----LDQG--LNEMYSCPTCRKP 382 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~W-----l~~~--~~~~~~CP~CR~~ 382 (442)
.+++.|.+|.+.-+-.--=.|-..||..|+..- +.+- ....-.|+.|+.+
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 467789999976321111168899999999975 2221 2235689999653
No 101
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.61 E-value=0.62 Score=36.52 Aligned_cols=52 Identities=17% Similarity=0.546 Sum_probs=35.1
Q ss_pred CCCCCccCcccccC--Cccc---cCcccchHHHHHHHHHh----CCCCCCCccccccCCcC
Q 013469 334 YDDECAICREPMAK--AKKL---LCNHLFHLACLRSWLDQ----GLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 334 ~~~~C~IC~e~~~~--~~~L---pCgH~FH~~Cl~~Wl~~----~~~~~~~CP~CR~~l~~ 385 (442)
.+..|.+|.+.-.. ...+ .|...||..|+..-+.. .....-.||.|+.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 46789999976432 2333 68899999999876542 22224689999875543
No 102
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=67.47 E-value=1 Score=35.49 Aligned_cols=45 Identities=24% Similarity=0.621 Sum_probs=27.5
Q ss_pred cCCCCCccCcccccCCccc---c--Cc-ccchHHHHHHHHHhCCCCCCCccc-ccc
Q 013469 333 AYDDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPT-CRK 381 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~L---p--Cg-H~FH~~Cl~~Wl~~~~~~~~~CP~-CR~ 381 (442)
+.+..| ||...-.. ..+ . |. ..||..|+. +.......-.||. |++
T Consensus 24 ~~~~yC-iC~~~~~g-~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYG-PMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCSS-SEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCCC-CEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 344567 89975332 222 3 44 689999985 3332223568999 974
No 103
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=67.47 E-value=0.53 Score=34.53 Aligned_cols=51 Identities=22% Similarity=0.554 Sum_probs=33.5
Q ss_pred cCCCCCccCcccccC--Cccc---cCcccchHHHHHHHHHh---CCCCCCCccccccCC
Q 013469 333 AYDDECAICREPMAK--AKKL---LCNHLFHLACLRSWLDQ---GLNEMYSCPTCRKPL 383 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~--~~~L---pCgH~FH~~Cl~~Wl~~---~~~~~~~CP~CR~~l 383 (442)
..+..|.+|...... ...+ .|.-.||..|+..-+.. .....-.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 356789999976432 3333 68889999998764422 012246899997643
No 104
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=66.89 E-value=0.7 Score=33.37 Aligned_cols=43 Identities=26% Similarity=0.702 Sum_probs=28.1
Q ss_pred CCCCccCcccccCCccc---c--Cc-ccchHHHHHHHHHhCCCCCCCcccccc
Q 013469 335 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRK 381 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~L---p--Cg-H~FH~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (442)
+..| +|.+... +..+ . |. ..||..|+. +.......-.||.|++
T Consensus 9 ~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3456 8988643 3333 3 66 699999997 4443334568999975
No 105
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=65.21 E-value=0.69 Score=35.36 Aligned_cols=45 Identities=33% Similarity=0.742 Sum_probs=28.1
Q ss_pred CCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCC-CCcccccc
Q 013469 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEM-YSCPTCRK 381 (442)
Q Consensus 337 ~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~-~~CP~CR~ 381 (442)
.|.+|...-.....+ .|...||..|+.+-+.+..... -.||.|++
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 355555543333334 5788999999987666533323 58999985
No 106
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=64.86 E-value=2.6 Score=34.22 Aligned_cols=52 Identities=25% Similarity=0.419 Sum_probs=32.5
Q ss_pred cCCCCCccCccccc--CCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 333 AYDDECAICREPMA--KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 333 ~~~~~C~IC~e~~~--~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
..++.|.+|.+.-+ -...-.|...||..|+. +.+.....-.||.|+.....+
T Consensus 13 ~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCCCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 45778999985311 11212477899999997 544332235799887666544
No 107
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=64.86 E-value=1 Score=33.69 Aligned_cols=45 Identities=33% Similarity=0.750 Sum_probs=28.7
Q ss_pred CCccCcccccCCccc---cCcccchHHHHHHHHHhCCCC-CCCcccccc
Q 013469 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRK 381 (442)
Q Consensus 337 ~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~-~~~CP~CR~ 381 (442)
.|.+|...-.....+ .|...||..|+.+=+.+.... .-.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 456777543333334 588999999998655543222 457999975
No 108
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=64.56 E-value=19 Score=28.02 Aligned_cols=48 Identities=19% Similarity=0.393 Sum_probs=35.1
Q ss_pred CCCCCccCcccccCC----cc---ccCcccchHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 334 YDDECAICREPMAKA----KK---LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~----~~---LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
....|.||-++.... .. -.|+---|+.|..-=...+ ++.||-|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG---~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG---TQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS---CSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc---CccccccCCccc
Confidence 457899999996432 11 2577778999997755554 689999998764
No 109
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=63.45 E-value=6.5 Score=32.68 Aligned_cols=29 Identities=17% Similarity=0.541 Sum_probs=22.4
Q ss_pred CCCCccCcccccCCcc----ccCcccchHHHHH
Q 013469 335 DDECAICREPMAKAKK----LLCNHLFHLACLR 363 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~----LpCgH~FH~~Cl~ 363 (442)
-..|.+|...|..-.+ -.||++||..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 3579999999875422 2799999999953
No 110
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=60.56 E-value=1.1 Score=32.58 Aligned_cols=43 Identities=26% Similarity=0.718 Sum_probs=27.8
Q ss_pred CCCCccCcccccCCccc---c--Cc-ccchHHHHHHHHHhCCCCCCCcccccc
Q 013469 335 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRK 381 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~L---p--Cg-H~FH~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (442)
+..| +|.+... +..+ . |. ..||..|+. +.......-.||.|++
T Consensus 11 ~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 3456 8988633 3333 3 55 799999986 3333333568999975
No 111
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.45 E-value=7.8 Score=29.28 Aligned_cols=48 Identities=27% Similarity=0.657 Sum_probs=29.8
Q ss_pred CCCCccCcccccC-Cccc---cCcccchHHHHHHHHHh-CCCCCCCccccccCC
Q 013469 335 DDECAICREPMAK-AKKL---LCNHLFHLACLRSWLDQ-GLNEMYSCPTCRKPL 383 (442)
Q Consensus 335 ~~~C~IC~e~~~~-~~~L---pCgH~FH~~Cl~~Wl~~-~~~~~~~CP~CR~~l 383 (442)
...| ||..+.+. ...+ .|...||..|+.---.. .......||.|+..-
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3456 89887642 2222 58899999998532211 112357899998754
No 112
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=58.43 E-value=4.2 Score=34.39 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=19.9
Q ss_pred cCCCCCccCcccccC--C---ccccCcccchHHHH
Q 013469 333 AYDDECAICREPMAK--A---KKLLCNHLFHLACL 362 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~--~---~~LpCgH~FH~~Cl 362 (442)
..+..|++|..++.- . .-..|+|.+|..|-
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 346789999999842 1 22367777777663
No 113
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=57.55 E-value=2.8 Score=33.39 Aligned_cols=43 Identities=21% Similarity=0.573 Sum_probs=28.9
Q ss_pred CCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCcccccc
Q 013469 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (442)
Q Consensus 337 ~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (442)
.| ||.........+ .|.-.||..|+..=... .+..-.||.|+.
T Consensus 30 rC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~-~p~~w~C~~C~~ 75 (98)
T 2lv9_A 30 RC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQH-IPDTYLCERCQP 75 (98)
T ss_dssp CC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTS-CCSSBCCTTTSS
T ss_pred Ee-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccC-CCCCEECCCCcC
Confidence 47 788766555444 68899999998642222 233568999974
No 114
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=56.03 E-value=1.6 Score=31.55 Aligned_cols=43 Identities=26% Similarity=0.720 Sum_probs=28.1
Q ss_pred CCCCccCcccccCCccc---c--Cc-ccchHHHHHHHHHhCCCCCCCcccccc
Q 013469 335 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRK 381 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~L---p--Cg-H~FH~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (442)
...| ||...-. ...+ . |. ..||..|+. +.+.....-.||.|++
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456 8988643 3333 2 55 689999997 5443334578999975
No 115
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=55.41 E-value=1.5 Score=30.59 Aligned_cols=44 Identities=25% Similarity=0.563 Sum_probs=26.2
Q ss_pred CCccCcccccCCcc-c----cCcccchHHHHHHHHHhCCCCCCCccccc
Q 013469 337 ECAICREPMAKAKK-L----LCNHLFHLACLRSWLDQGLNEMYSCPTCR 380 (442)
Q Consensus 337 ~C~IC~e~~~~~~~-L----pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR 380 (442)
.|.+|..+..+... + .|...||..|+.---....+....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 47788888754322 2 47789999996421111001257899986
No 116
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=54.84 E-value=2.8 Score=36.71 Aligned_cols=48 Identities=27% Similarity=0.683 Sum_probs=30.4
Q ss_pred CCCCCccCcccccCCc-cc---cCcccchHHHHHHHHH-hCCCCCCCccccccC
Q 013469 334 YDDECAICREPMAKAK-KL---LCNHLFHLACLRSWLD-QGLNEMYSCPTCRKP 382 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~-~L---pCgH~FH~~Cl~~Wl~-~~~~~~~~CP~CR~~ 382 (442)
.+..| +|....++.. .+ .|...||..|+.---. ......-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34568 9998754322 22 6889999999852211 112235789999864
No 117
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=54.24 E-value=2.1 Score=31.70 Aligned_cols=45 Identities=27% Similarity=0.703 Sum_probs=29.0
Q ss_pred CCCCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCcccccc
Q 013469 335 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (442)
...| ||..+......+ .|...||..|+.---. ..+....||.|+.
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~-~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKS-NVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTT-SCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCCCCCEEECCCCCccccccccCcCcc-cCCCcEECCCCCC
Confidence 4467 998876533233 5889999999853211 2233578999975
No 118
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=53.29 E-value=3 Score=31.34 Aligned_cols=47 Identities=30% Similarity=0.596 Sum_probs=28.8
Q ss_pred CCCCccCcccccCCccc---cCcccchHHHHHHHHHh-----CCCCCCCccccccC
Q 013469 335 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQ-----GLNEMYSCPTCRKP 382 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~-----~~~~~~~CP~CR~~ 382 (442)
...| ||.........+ .|...||..|+.---.. ..+....||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3456 898876543223 58899999997421110 01125899999864
No 119
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=53.14 E-value=7.1 Score=28.53 Aligned_cols=48 Identities=23% Similarity=0.551 Sum_probs=29.6
Q ss_pred CCCCCccCcccccCCccc-----cCcccchHHHHHH------HHHhCCCCCCCcccccc
Q 013469 334 YDDECAICREPMAKAKKL-----LCNHLFHLACLRS------WLDQGLNEMYSCPTCRK 381 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~L-----pCgH~FH~~Cl~~------Wl~~~~~~~~~CP~CR~ 381 (442)
....|.+|..+..+.... .|.-.||..|+.- -+.+.....-.||.|++
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 456899999997654332 6888999999631 12211111357998863
No 120
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=52.91 E-value=6.6 Score=31.62 Aligned_cols=29 Identities=24% Similarity=0.565 Sum_probs=18.5
Q ss_pred CCccccCcccchHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 347 KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 347 ~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
.++...||+.|. ........||.|+..-.
T Consensus 67 p~~C~~CG~~F~---------~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 67 PAQCRKCGFVFK---------AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp CCBBTTTCCBCC---------CCSSCCSSCSSSCCCCB
T ss_pred CcChhhCcCeec---------ccCCCCCCCcCCCCCcc
Confidence 445567888881 12222579999998643
No 121
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=52.22 E-value=1.8 Score=35.12 Aligned_cols=46 Identities=24% Similarity=0.581 Sum_probs=30.3
Q ss_pred CCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCccccccC
Q 013469 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (442)
Q Consensus 337 ~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (442)
.|.+|.+.-++.+.+ .|...||..|+.+-+..-....-.||.|+.-
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 567777664444444 6888999999976554432234579999653
No 122
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=52.14 E-value=13 Score=30.11 Aligned_cols=44 Identities=23% Similarity=0.486 Sum_probs=28.3
Q ss_pred CCCCCccCccccc-----CCccc----cCcccchHHHHHH------HHHhCCCCCCCccccc
Q 013469 334 YDDECAICREPMA-----KAKKL----LCNHLFHLACLRS------WLDQGLNEMYSCPTCR 380 (442)
Q Consensus 334 ~~~~C~IC~e~~~-----~~~~L----pCgH~FH~~Cl~~------Wl~~~~~~~~~CP~CR 380 (442)
....|.+|...-+ .+..| .|+..||..|+.. -+.+. .-.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~---~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKAL---RWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTS---CCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhcc---ccccccCC
Confidence 3568999987632 12222 7999999999952 22222 45788885
No 123
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=51.68 E-value=4.5 Score=32.98 Aligned_cols=43 Identities=21% Similarity=0.474 Sum_probs=27.8
Q ss_pred CCCCccCcccccC------Cccc----cCcccchHHHHHHH------HHhCCCCCCCccccc
Q 013469 335 DDECAICREPMAK------AKKL----LCNHLFHLACLRSW------LDQGLNEMYSCPTCR 380 (442)
Q Consensus 335 ~~~C~IC~e~~~~------~~~L----pCgH~FH~~Cl~~W------l~~~~~~~~~CP~CR 380 (442)
++.|.+|.+.-.. +..| .|+..||..|+... ..+. .-.||.|+
T Consensus 1 ~~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~---~W~C~~C~ 59 (114)
T 2kwj_A 1 GSYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTY---KWQCIECK 59 (114)
T ss_dssp CCCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHT---TCCCGGGC
T ss_pred CCcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCC---ccCccccC
Confidence 3579999876421 1222 78999999998754 2222 35788774
No 124
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=50.73 E-value=7.5 Score=28.97 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=22.5
Q ss_pred CCCCccCcccccCCcc----ccCcccchHHHHH
Q 013469 335 DDECAICREPMAKAKK----LLCNHLFHLACLR 363 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~----LpCgH~FH~~Cl~ 363 (442)
+..|.+|...|..-.+ -.||++||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 4589999999875432 2799999999963
No 125
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=50.33 E-value=3.4 Score=32.19 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=32.4
Q ss_pred cCCCCCccCcccc--cCCccc---cCcccchHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 333 AYDDECAICREPM--AKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 333 ~~~~~C~IC~e~~--~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
+.+..|.||.+.- .....+ .|.-.||..|+..-. -+...-.||.|+....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccCccc
Confidence 4577899999753 111223 688899999997532 1112467999987543
No 126
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.88 E-value=11 Score=27.11 Aligned_cols=40 Identities=23% Similarity=0.452 Sum_probs=31.0
Q ss_pred CCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
...|.-|-+.+.......-+..||.+| ..|-.|++++...
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPEC------------FRCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTT------------SBCSSSCCBCSSS
T ss_pred CCcCccCCCEecceEEEECcccccccC------------CEeCCCCCcCCCC
Confidence 457999999887654446788899988 5899999887654
No 127
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=48.74 E-value=2 Score=32.09 Aligned_cols=46 Identities=20% Similarity=0.405 Sum_probs=29.3
Q ss_pred CCCccCcccccCCc-cc---cCcccchHHHHHHHHHhCCCCCCCccccccC
Q 013469 336 DECAICREPMAKAK-KL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (442)
Q Consensus 336 ~~C~IC~e~~~~~~-~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (442)
..| ||.....+.. .+ .|...||..|+.---....+....||.|+..
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 358 6988754432 23 6889999999753211122345789999763
No 128
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.38 E-value=11 Score=27.07 Aligned_cols=39 Identities=26% Similarity=0.705 Sum_probs=30.5
Q ss_pred CCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
...|+-|.+.+.......-+..||.+| ..|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYREQPWHKEC------------FVCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCSSEEESSSSEEETTT------------SBCSSSCCBCTT
T ss_pred CCCCcccCCeeccceEEECccccCCCC------------CccCCCCCcCCc
Confidence 457999999887654446788899988 589999988753
No 129
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.38 E-value=9.7 Score=28.34 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=30.6
Q ss_pred CCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
...|+-|.+.+.......-+..||..| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPEC------------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTT------------TSCSSSCCCHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCc------------CeeCCCCCCCC
Confidence 468999999987654456788999988 58999998874
No 130
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.28 E-value=10 Score=29.01 Aligned_cols=40 Identities=15% Similarity=0.409 Sum_probs=32.1
Q ss_pred CCCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
....|+-|-+.+.......-|..||..| ..|-.|++++..
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE------------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT------------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEecceEEEECCccccccC------------CccCCCCCCCCC
Confidence 3567999999987555557789999988 589999998864
No 131
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=46.13 E-value=13 Score=36.64 Aligned_cols=50 Identities=22% Similarity=0.462 Sum_probs=32.5
Q ss_pred CCCCccCcccccCCcc-ccCcccchHHHHHHHHHhC-CCCCCCccccccCCcC
Q 013469 335 DDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFV 385 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~-LpCgH~FH~~Cl~~Wl~~~-~~~~~~CP~CR~~l~~ 385 (442)
...|++-...+..|.+ ..|.|.-|.+- ..|++.. ....-.||+|.+.+..
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCccccccccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCH
Confidence 4579999999988765 48999843332 3344321 0114689999988733
No 132
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.88 E-value=10 Score=27.89 Aligned_cols=41 Identities=24% Similarity=0.501 Sum_probs=31.4
Q ss_pred CCCCCccCcccccCCc-cccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~-~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
....|+.|.+.+.... ...-+..||..| ..|..|++++...
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFC------------LKCERCSKTLTPG 49 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEETTEEEETTT------------CBCSSSCCBCCTT
T ss_pred CCCCCcCCCCEeECCeEEEECCeEeeCCC------------CCCCCCCCccCCC
Confidence 3568999999987443 336788899988 5899999988643
No 133
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.47 E-value=13 Score=26.93 Aligned_cols=40 Identities=25% Similarity=0.606 Sum_probs=30.5
Q ss_pred CCCCccCcccccCC--ccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 335 ~~~C~IC~e~~~~~--~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
...|+-|.+.+... ....-|..||..| ..|-.|++++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHC------------FLCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTT------------CBCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccEEEECccccCccc------------CeECCCCCcCCCC
Confidence 56899999998853 3335688999988 5899999887543
No 134
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.44 E-value=12 Score=26.93 Aligned_cols=39 Identities=23% Similarity=0.591 Sum_probs=30.1
Q ss_pred CCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
...|+-|.+.+.......-+..||.+| ..|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 43 (69)
T 2cur_A 5 SSGCVKCNKAITSGGITYQDQPWHADC------------FVCVTCSKKLAG 43 (69)
T ss_dssp CCCCSSSCCCCCTTCEEETTEEECTTT------------TBCTTTCCBCTT
T ss_pred cCCCcccCCEeCcceEEECccccccCc------------CEECCCCCCCCC
Confidence 457999999887544446788899988 589999988753
No 135
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.01 E-value=15 Score=27.33 Aligned_cols=40 Identities=20% Similarity=0.491 Sum_probs=31.5
Q ss_pred CCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
...|+-|.+.+.......-|..||..| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH------------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT------------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEecceEEEECcceeCCCC------------CEeCCCCCccCCC
Confidence 467999999888544446788899988 5899999988643
No 136
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=44.70 E-value=1.4 Score=36.14 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=31.4
Q ss_pred CCccCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCccccccCC
Q 013469 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (442)
Q Consensus 337 ~C~IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l 383 (442)
.|.+|...-.....+ .|...||..|+.+=+.......-.||.|+...
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 688888764444444 68899999999865544322245699997643
No 137
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.22 E-value=20 Score=26.20 Aligned_cols=38 Identities=16% Similarity=0.411 Sum_probs=30.4
Q ss_pred CCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
...|+-|-..+.......-+..||.+| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~v~a~~~~wH~~C------------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITGRVLEAGEKHYHPSC------------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSSCCBCCSSCCBCTTT------------SCCSSSCCCCC
T ss_pred cCCcccCCCEecCeeEEeCCCCCCCCc------------CEeCCCCCCCC
Confidence 457999999887655556788999988 58999998876
No 138
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=44.07 E-value=15 Score=36.12 Aligned_cols=48 Identities=21% Similarity=0.445 Sum_probs=32.3
Q ss_pred CCCCccCcccccCCcc-ccCccc--chHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 335 DDECAICREPMAKAKK-LLCNHL--FHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~-LpCgH~--FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
...|++-...+..|.+ ..|.|. |-..=.-+..++.. .-.||+|.+.+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~--~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKP--TWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSC--CCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCC--CeECCCCCcccC
Confidence 4579999998888765 489998 43333333333321 468999998874
No 139
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=43.90 E-value=3.2 Score=34.41 Aligned_cols=45 Identities=20% Similarity=0.464 Sum_probs=30.8
Q ss_pred CCCCccCcccccCCcc----ccCcccchHHHHHHHHHhCCCCCCCccccccCC
Q 013469 335 DDECAICREPMAKAKK----LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~----LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l 383 (442)
...|..|...|..-++ -.||.+||..|....... ...|-.|-..+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~----vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG----PRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--------CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC----ceECHHHHHHH
Confidence 4579999999875422 389999999997655433 46898896543
No 140
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=43.80 E-value=11 Score=28.90 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCCCccCcccccCCcc----ccCcccchHHHHHH
Q 013469 335 DDECAICREPMAKAKK----LLCNHLFHLACLRS 364 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~----LpCgH~FH~~Cl~~ 364 (442)
...|.+|...|..-.+ -.||++||..|...
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 4579999999875432 27999999999644
No 141
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=43.60 E-value=17 Score=27.69 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=31.7
Q ss_pred CCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
...|.-|.+.+.......-+..||.+| ..|-.|++++...
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPEC------------FVCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTT------------CCCSSSCCCTTTS
T ss_pred CCCcccCCCEecccEEEECCceECccC------------CEecCCCCCCCCC
Confidence 457999999987654456788999988 5899999988543
No 142
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=43.51 E-value=11 Score=29.29 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=23.6
Q ss_pred CCCCccCcccccCCcc----ccCcccchHHHHHHH
Q 013469 335 DDECAICREPMAKAKK----LLCNHLFHLACLRSW 365 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~----LpCgH~FH~~Cl~~W 365 (442)
...|.+|...|..-.+ -.||++||..|....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 4579999999875422 379999999996543
No 143
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=43.48 E-value=10 Score=26.95 Aligned_cols=39 Identities=23% Similarity=0.601 Sum_probs=30.0
Q ss_pred CCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
...|+-|.+.+.......-|..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEH------------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTT------------CBCTTTCCBCSS
T ss_pred CCCCcccCCEecceEEEECccccccCc------------CEECCCCCCCCC
Confidence 457999999887444446678899988 589999988754
No 144
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.47 E-value=15 Score=27.01 Aligned_cols=38 Identities=21% Similarity=0.662 Sum_probs=30.0
Q ss_pred CCCCccCcccccC----CccccCcccchHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 335 DDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 335 ~~~C~IC~e~~~~----~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
...|+.|-+++.. .....-+..||.+| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C------------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSEC------------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGG------------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCccc------------CChhhCCCcCC
Confidence 4689999999875 33346788899998 58999998875
No 145
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.14 E-value=16 Score=27.07 Aligned_cols=39 Identities=18% Similarity=0.437 Sum_probs=30.7
Q ss_pred CCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
...|+.|.+.+.......-+..||.+| ..|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 15 GEFCHGCSLLMTGPFMVAGEFKYHPEC------------FACMSCKVIIED 53 (81)
T ss_dssp SCBCTTTCCBCCSCCBCCTTCCBCTTS------------CBCTTTCCBCCT
T ss_pred CCcCccCCCCcCceEEEECCceecccc------------CCccCCCCccCC
Confidence 457999999888554446788899888 589999998854
No 146
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.09 E-value=16 Score=27.14 Aligned_cols=40 Identities=23% Similarity=0.588 Sum_probs=31.0
Q ss_pred CCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
...|+-|-+.+.......-+..||..| ..|-.|++++...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~wH~~C------------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 15 GTRCFSCDQFIEGEVVSALGKTYHPDC------------FVCAVCRLPFPPG 54 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT------------SSCSSSCCCCCSS
T ss_pred CCcCccccCEeccceEEECCceeCccC------------CccccCCCCCCCC
Confidence 458999999887544446788899988 5899999887543
No 147
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.00 E-value=17 Score=26.23 Aligned_cols=39 Identities=23% Similarity=0.593 Sum_probs=29.8
Q ss_pred CCCCccCcccccC----CccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 335 DDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 335 ~~~C~IC~e~~~~----~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
...|+-|-+.+.. .....-+..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C------------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDC------------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTT------------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCccc------------CEeccCCCcCCC
Confidence 4579999999875 23335688999988 589999988753
No 148
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=41.91 E-value=8.6 Score=34.98 Aligned_cols=29 Identities=21% Similarity=0.500 Sum_probs=22.6
Q ss_pred CCCCccCcccccCCcc----ccCcccchHHHHH
Q 013469 335 DDECAICREPMAKAKK----LLCNHLFHLACLR 363 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~----LpCgH~FH~~Cl~ 363 (442)
+..|.+|...|..-.+ -.||++||..|..
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 5789999999874322 2799999999964
No 149
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=41.51 E-value=12 Score=28.56 Aligned_cols=30 Identities=20% Similarity=0.641 Sum_probs=23.0
Q ss_pred CCCCccCcccccCCcc----ccCcccchHHHHHH
Q 013469 335 DDECAICREPMAKAKK----LLCNHLFHLACLRS 364 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~----LpCgH~FH~~Cl~~ 364 (442)
...|.+|...|..-.+ -.||++||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4479999999975432 27999999999643
No 150
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=41.37 E-value=55 Score=28.03 Aligned_cols=46 Identities=20% Similarity=0.488 Sum_probs=29.1
Q ss_pred CCCCCccCcccccC---C--ccccCcccchHHHHHHHHHhCCCCCCCccccccC
Q 013469 334 YDDECAICREPMAK---A--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (442)
Q Consensus 334 ~~~~C~IC~e~~~~---~--~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (442)
.+..|++|..++.- . .-..|+|.+|..|- .|..+ ...-.|-.|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~--~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPE--EQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSS--SSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCC--CCcEeeHHHHHH
Confidence 36789999998742 1 23478999999986 22222 113457777643
No 151
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=40.47 E-value=9.9 Score=34.85 Aligned_cols=30 Identities=23% Similarity=0.596 Sum_probs=23.4
Q ss_pred CCCCccCcccccCCcc----ccCcccchHHHHHH
Q 013469 335 DDECAICREPMAKAKK----LLCNHLFHLACLRS 364 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~----LpCgH~FH~~Cl~~ 364 (442)
++.|.+|...|..-.+ -.||++||..|-..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 5689999999875422 37999999999654
No 152
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=40.36 E-value=11 Score=29.21 Aligned_cols=30 Identities=27% Similarity=0.477 Sum_probs=23.1
Q ss_pred CCCCccCcccccCCcc----ccCcccchHHHHHH
Q 013469 335 DDECAICREPMAKAKK----LLCNHLFHLACLRS 364 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~----LpCgH~FH~~Cl~~ 364 (442)
...|.+|...|..-.+ -.||++||..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4579999999875432 27999999999643
No 153
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=40.17 E-value=39 Score=27.31 Aligned_cols=35 Identities=26% Similarity=0.776 Sum_probs=21.8
Q ss_pred CCccCcccccCC--ccccCcccchHHHHHHHHHhCCCCCCCccccccCC
Q 013469 337 ECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (442)
Q Consensus 337 ~C~IC~e~~~~~--~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l 383 (442)
.|+-|...+... ....-++.||..| ..|-.|++++
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~C------------F~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLEC------------FKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTT------------CBCTTTCCBC
T ss_pred cccCCCCeecCCceEEEECCccccccc------------CccccCCCCC
Confidence 677777776532 2224467777776 4677777666
No 154
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.92 E-value=12 Score=28.55 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=21.8
Q ss_pred CCCCccCcccccCCcc----ccCcccchHHHH
Q 013469 335 DDECAICREPMAKAKK----LLCNHLFHLACL 362 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~----LpCgH~FH~~Cl 362 (442)
-..|.+|...|..-.+ -.||++||..|.
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 3579999999865432 279999999995
No 155
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=39.37 E-value=11 Score=29.91 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=11.2
Q ss_pred chHHHHHHHHHh
Q 013469 357 FHLACLRSWLDQ 368 (442)
Q Consensus 357 FH~~Cl~~Wl~~ 368 (442)
||+.|+.+|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999976
No 156
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=39.27 E-value=11 Score=29.84 Aligned_cols=12 Identities=42% Similarity=0.974 Sum_probs=11.1
Q ss_pred chHHHHHHHHHh
Q 013469 357 FHLACLRSWLDQ 368 (442)
Q Consensus 357 FH~~Cl~~Wl~~ 368 (442)
||+.|+.+|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999985
No 157
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.82 E-value=18 Score=26.84 Aligned_cols=39 Identities=23% Similarity=0.623 Sum_probs=30.6
Q ss_pred CCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
...|+-|.+.+.......-+..||..| .+|..|++++..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGKAYHPGC------------FTCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT------------CBCSSSCCBCTT
T ss_pred CCccccCCCeecceeEEECCccccHHh------------cCcccCCCccCC
Confidence 567999999887554446788899988 589999988753
No 158
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=38.39 E-value=6.9 Score=29.57 Aligned_cols=47 Identities=21% Similarity=0.523 Sum_probs=28.5
Q ss_pred CCCCccCcccccCCccc-----cCcccchHHHHHHHHHh-----CCCCCCCccccccC
Q 013469 335 DDECAICREPMAKAKKL-----LCNHLFHLACLRSWLDQ-----GLNEMYSCPTCRKP 382 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~L-----pCgH~FH~~Cl~~Wl~~-----~~~~~~~CP~CR~~ 382 (442)
...| ||...-.....+ .|...||..|+.---.. ..+....||.|+..
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 3457 798874333222 58899999998421110 11235789999864
No 159
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.14 E-value=25 Score=26.29 Aligned_cols=41 Identities=34% Similarity=0.839 Sum_probs=30.9
Q ss_pred CCCCCccCcccccCCcc-ccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~~-LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
....|+-|.+.+..... ..-+..||..| ..|-.|++++...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~C------------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSC------------FRCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTT------------CBCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCc------------CEEcCCCCCcCCC
Confidence 45689999999865433 35678899998 5899999887544
No 160
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.71 E-value=20 Score=25.79 Aligned_cols=40 Identities=20% Similarity=0.595 Sum_probs=30.4
Q ss_pred CCCCccCcccccCC--ccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 335 ~~~C~IC~e~~~~~--~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
...|+.|.+.+... ....-|..||..| ..|-.|++++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETC------------FICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTT------------TCCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEECcCeecccC------------CcccccCCccCCC
Confidence 45899999998754 3335788899988 5899999887543
No 161
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=35.88 E-value=17 Score=22.27 Aligned_cols=26 Identities=27% Similarity=0.636 Sum_probs=17.6
Q ss_pred CCCccCcccccCCccc-cCcccchHHH
Q 013469 336 DECAICREPMAKAKKL-LCNHLFHLAC 361 (442)
Q Consensus 336 ~~C~IC~e~~~~~~~L-pCgH~FH~~C 361 (442)
+.|+.|-...-...++ .-|..||+.|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGG
T ss_pred CcCCccCCEEecceeEEECCeEecccC
Confidence 4688888876554443 4567788877
No 162
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=35.72 E-value=2 Score=34.13 Aligned_cols=42 Identities=24% Similarity=0.466 Sum_probs=28.0
Q ss_pred CCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
+..|+.|..+++.. =++.+|..|-..... ...||.|.+++..
T Consensus 32 ~~~CP~Cq~eL~~~----g~~~hC~~C~~~f~~-----~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQD----NGHARCRSCGEFIEM-----KALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEEE----TTEEEETTTCCEEEE-----EEECTTTCSBCEE
T ss_pred cccCccCCCcceec----CCEEECccccchhhc-----cccCcchhhHHHH
Confidence 46899999988642 134456777543222 3689999998843
No 163
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.57 E-value=21 Score=26.31 Aligned_cols=40 Identities=20% Similarity=0.603 Sum_probs=31.0
Q ss_pred CCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
...|+-|.+.+.......-+..||..| ..|-.|++++...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLENYLSAMDTVWHPEC------------FVCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCSSCEEETTEEECTTT------------CBCSSSCCBSCSS
T ss_pred CCccccCCCeecceeEEECCCeEecCc------------CChhhCCCCCCCC
Confidence 457999999887644446778899988 5899999988653
No 164
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.47 E-value=26 Score=25.80 Aligned_cols=39 Identities=23% Similarity=0.609 Sum_probs=30.4
Q ss_pred CCCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
...|+-|.+.+.......-+..||..| ..|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 53 (80)
T 2cuq_A 15 APRCARCSKTLTQGGVTYRDQPWHREC------------LVCTGCQTPLAG 53 (80)
T ss_dssp SCCCTTTCCCCCSCCEESSSSEECTTT------------CBCSSSCCBCTT
T ss_pred CCcCCCCCCEecCcEEEECCchhhhhh------------CCcccCCCcCCC
Confidence 457999999887654446778899988 589999998843
No 165
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=35.34 E-value=4.7 Score=27.94 Aligned_cols=41 Identities=27% Similarity=0.735 Sum_probs=25.2
Q ss_pred cCcccccCCccc---cCcccchHHHHHHHHHhCCCCCCCcccccc
Q 013469 340 ICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (442)
Q Consensus 340 IC~e~~~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (442)
||..+......+ .|+..||..|+.---. ..+..-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~-~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKS-NVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGG-GCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcc-cCCCcEECcCCCC
Confidence 576654432222 4888999999853221 1234578999975
No 166
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.26 E-value=27 Score=25.87 Aligned_cols=40 Identities=18% Similarity=0.595 Sum_probs=30.3
Q ss_pred CCCCccCcccccCC--ccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 335 ~~~C~IC~e~~~~~--~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
...|+.|.+.+... ....-+..||.+| ..|-.|++++...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDC------------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTT------------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEECcccccccc------------CchhhCCCccCCC
Confidence 46899999998743 2335678899988 5899999887653
No 167
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.16 E-value=23 Score=26.44 Aligned_cols=39 Identities=28% Similarity=0.682 Sum_probs=30.1
Q ss_pred CCCCCccCcccccCCc-cccCcccchHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 334 YDDECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~-~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
....|+-|-+.+.... ...-+..||..| ..|-.|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~C------------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSC------------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTT------------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEECCccccccc------------CCcCcCCCCcC
Confidence 3568999999986443 335678899988 58999998875
No 168
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.00 E-value=26 Score=25.19 Aligned_cols=38 Identities=29% Similarity=0.737 Sum_probs=29.0
Q ss_pred CCCCccCcccccCC--ccccCcccchHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 335 ~~~C~IC~e~~~~~--~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
...|+.|.+.+... ....-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGC------------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTT------------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccC------------CcccccCCcCC
Confidence 45799999987642 3336678899988 58999998884
No 169
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.71 E-value=23 Score=25.78 Aligned_cols=41 Identities=27% Similarity=0.583 Sum_probs=31.0
Q ss_pred CCCCCccCcccccCC-cc-ccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKA-KK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~-~~-LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
....|+-|.+.+... .. ..-|..||..| ..|-.|++++...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQC------------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTT------------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEeCccEecccc------------CeECCCCCCCCCC
Confidence 356899999998643 22 36788999988 5899999887653
No 170
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=32.67 E-value=59 Score=26.15 Aligned_cols=32 Identities=22% Similarity=0.530 Sum_probs=20.0
Q ss_pred cCcccchHHHHH------HHHHh-CCCCCCCccccccCC
Q 013469 352 LCNHLFHLACLR------SWLDQ-GLNEMYSCPTCRKPL 383 (442)
Q Consensus 352 pCgH~FH~~Cl~------~Wl~~-~~~~~~~CP~CR~~l 383 (442)
-|++.||..|.. +-+.+ .......||.|...-
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 388899999952 22332 112247899997654
No 171
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=32.34 E-value=9.5 Score=38.10 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCCCccCcccccCCc----cccCcccchHHHHHHHHHhC---CCCCCCccccccCC
Q 013469 335 DDECAICREPMAKAK----KLLCNHLFHLACLRSWLDQG---LNEMYSCPTCRKPL 383 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~----~LpCgH~FH~~Cl~~Wl~~~---~~~~~~CP~CR~~l 383 (442)
...|.+|...|.... .-.||++||..|-.....-. ......|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 457999999986432 23899999999987654221 01135677776544
No 172
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=31.51 E-value=17 Score=26.57 Aligned_cols=37 Identities=24% Similarity=0.536 Sum_probs=21.1
Q ss_pred CCccCcccccCC-ccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 337 ECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 337 ~C~IC~e~~~~~-~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
.|+-|.+.+... ....-|..||..| ..|..|+.++..
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPC------------LKCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTT------------CBCTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEECCccccCCC------------CCccccCccCCC
Confidence 466666665422 2223466677666 467777766644
No 173
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=31.13 E-value=31 Score=25.54 Aligned_cols=47 Identities=23% Similarity=0.456 Sum_probs=30.8
Q ss_pred cCCCCCccCcccc--cCCccc---cCcccchHHHHHHHHHhCCCCCCCcccccc
Q 013469 333 AYDDECAICREPM--AKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (442)
Q Consensus 333 ~~~~~C~IC~e~~--~~~~~L---pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (442)
..++.|.||.+.- .....+ .|.-.||..|+..-. -....-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc--CCCCCcCCccCcC
Confidence 3577899998763 222333 688899999986421 1112457999975
No 174
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.56 E-value=10 Score=28.08 Aligned_cols=45 Identities=24% Similarity=0.686 Sum_probs=26.8
Q ss_pred CCCCccCcccccCCccc---c--C-cccchHHHHHHHHHhCCCCCCCccccccCC
Q 013469 335 DDECAICREPMAKAKKL---L--C-NHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~L---p--C-gH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l 383 (442)
...| +|...-. ...+ . | ...||..|+. +.......-.||.|+...
T Consensus 6 ~~yC-~C~~~~~-g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 6 SGYC-ICNQVSY-GEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCS-TTSCCCC-SSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHHH
T ss_pred CeEE-EcCCCCC-CCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCccc
Confidence 3456 5887532 2333 2 4 2689999986 333223356799998653
No 175
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=30.26 E-value=20 Score=29.31 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=30.7
Q ss_pred CCCCccCcccccCCc-cccCcccchHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 335 DDECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~-~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
...|+-|-+.+.... ...-|..||..| ..|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C------------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC------------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT------------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc------------cCcCcCCCccc
Confidence 357999999987664 446788999998 58999999885
No 176
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=30.24 E-value=15 Score=27.41 Aligned_cols=40 Identities=28% Similarity=0.592 Sum_probs=29.8
Q ss_pred CCCCccCcccccCC-ccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 335 DDECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 335 ~~~C~IC~e~~~~~-~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
...|+.|.+.+... ....-+..||.+| ..|-.|++++...
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCC------------FLCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSS------------EECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeEEeCCccccccc------------CccCCCCCCCCCC
Confidence 46899999988644 3346788899988 5899999887544
No 177
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=29.55 E-value=29 Score=25.26 Aligned_cols=39 Identities=23% Similarity=0.577 Sum_probs=29.8
Q ss_pred CCCCccCcccccC-----CccccCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 335 DDECAICREPMAK-----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 335 ~~~C~IC~e~~~~-----~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
...|+-|.+.+.. .....=+..||..| ..|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYC------------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTT------------CBCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCccc------------CEehhcCCCCCC
Confidence 4579999998874 23335678899988 589999988753
No 178
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=28.78 E-value=21 Score=28.52 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=31.1
Q ss_pred CCCCccCcccccCCc-cc----cCcccchHHHHHHH------HHhCCCCCCCccccccCC
Q 013469 335 DDECAICREPMAKAK-KL----LCNHLFHLACLRSW------LDQGLNEMYSCPTCRKPL 383 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~-~L----pCgH~FH~~Cl~~W------l~~~~~~~~~CP~CR~~l 383 (442)
...|.||..++.+.. .. .|...||..|+.-= +.......-.||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 357999999875432 22 57889999996411 111111247899998754
No 179
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.37 E-value=37 Score=25.78 Aligned_cols=41 Identities=24% Similarity=0.732 Sum_probs=31.4
Q ss_pred CCCCCccCcccccCCc-cccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 334 YDDECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 334 ~~~~C~IC~e~~~~~~-~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
....|+-|.+.+.... ...-+..||..| ..|-.|++++...
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISC------------FRCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTT------------CBCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCC------------CeeCCCCCCCCCC
Confidence 3568999999987543 346788899988 5899999887654
No 180
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=28.03 E-value=22 Score=26.08 Aligned_cols=29 Identities=31% Similarity=0.621 Sum_probs=21.9
Q ss_pred CCCCccCcccccCCccccC-cccchHHHHHH
Q 013469 335 DDECAICREPMAKAKKLLC-NHLFHLACLRS 364 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~LpC-gH~FH~~Cl~~ 364 (442)
..-|.||.++ ..-+-+.| |-+||..|.++
T Consensus 8 ~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 8 LPWCCICNED-ATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CSSCTTTCSC-CCEEETTTTSEEECSSHHHH
T ss_pred CCeeEEeCCC-CeEEecCCCCceehHHHHHH
Confidence 4579999998 33355678 78999999655
No 181
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.02 E-value=39 Score=24.94 Aligned_cols=39 Identities=26% Similarity=0.735 Sum_probs=29.2
Q ss_pred CCCCccCccccc-CCccc-cCcccchHHHHHHHHHhCCCCCCCccccccCCcC
Q 013469 335 DDECAICREPMA-KAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (442)
Q Consensus 335 ~~~C~IC~e~~~-~~~~L-pCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~ 385 (442)
...|+-|.+.+. +...+ .=+..||..| ..|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFYEDRHFHEGC------------FRCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCCSSCCCBTTT------------SBCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEEeCCccccccC------------CeecCCCCccCC
Confidence 457999999987 23333 4588899988 589999988754
No 182
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.34 E-value=30 Score=24.58 Aligned_cols=40 Identities=28% Similarity=0.643 Sum_probs=30.5
Q ss_pred CCCCccCcccccCCcc--ccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 335 DDECAICREPMAKAKK--LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~--LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
...|+-|.+.+....+ ..=|..||..| ..|-.|++++...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~C------------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQC------------FVCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETTT------------SSCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEeCcCeeCcCC------------CcccCCCCCCCCC
Confidence 5689999999875532 25678899988 5899999887554
No 183
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=24.17 E-value=20 Score=21.70 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=9.7
Q ss_pred CCCccccccCCcC
Q 013469 373 MYSCPTCRKPLFV 385 (442)
Q Consensus 373 ~~~CP~CR~~l~~ 385 (442)
...||.|+...+.
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 4689999986644
No 184
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=23.68 E-value=13 Score=23.57 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=11.9
Q ss_pred CCCCccCcccccCCccc
Q 013469 335 DDECAICREPMAKAKKL 351 (442)
Q Consensus 335 ~~~C~IC~e~~~~~~~L 351 (442)
+..||+|+.++..+..|
T Consensus 5 GFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 5 GFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEECTTTCCEESSHHHH
T ss_pred ccCCcHHHHHcCCHHHH
Confidence 45789998887765443
No 185
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=23.41 E-value=12 Score=36.09 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=28.4
Q ss_pred cCCCCCccCcccccCCccc----cCc--ccchHHHHHHHHHhCCCCCCCccccccC
Q 013469 333 AYDDECAICREPMAKAKKL----LCN--HLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (442)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~L----pCg--H~FH~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (442)
.....|++|-......... .=| |..|.-|-..|-.. ...||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~----R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV----RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC----TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec----CcCCcCCCCC
Confidence 3467899999875322111 122 44556676677655 5799999765
No 186
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.50 E-value=60 Score=26.13 Aligned_cols=46 Identities=7% Similarity=0.044 Sum_probs=30.2
Q ss_pred CCccCcccccC---CccccCcccchHHHHHHHHHhCCCCCCCccccccCCcCC
Q 013469 337 ECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (442)
Q Consensus 337 ~C~IC~e~~~~---~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~~~ 386 (442)
.|..|...+.+ .-...=|..||..|..+-+.. +..|-.|.++|...
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~----~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN----SGAGGSGGHMGSGG 82 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC----CCSSSCSSCCSCCE
T ss_pred CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC----CCccccCCCCcCch
Confidence 68888777752 223345677888887765432 23899999888753
No 187
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.93 E-value=5.4 Score=30.61 Aligned_cols=40 Identities=23% Similarity=0.624 Sum_probs=21.9
Q ss_pred CCCccCcccccCCccccCcccchHHHHHHHHHhCCCCCCCccccccCCc
Q 013469 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (442)
Q Consensus 336 ~~C~IC~e~~~~~~~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~CR~~l~ 384 (442)
..|+.|..++....+ +..|..|-+..-. ..-||.|.+++.
T Consensus 3 ~~CP~C~~~l~~~~~----~~~C~~C~~~~~~-----~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGD----TAHCETCAKDFSL-----QALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSS----EEECTTTCCEEEE-----EEECSSSCSCCC
T ss_pred CCCCCCCCccccCCC----ceECccccccCCC-----cccCcchhhHHH
Confidence 578888888754322 2234445322111 246788877763
No 188
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=20.15 E-value=34 Score=24.49 Aligned_cols=40 Identities=23% Similarity=0.673 Sum_probs=27.2
Q ss_pred CCCccCcccccCCc---cccCcccchHHHHHHHHHhCCCCCCCcccc
Q 013469 336 DECAICREPMAKAK---KLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (442)
Q Consensus 336 ~~C~IC~e~~~~~~---~LpCgH~FH~~Cl~~Wl~~~~~~~~~CP~C 379 (442)
..|--|...+.+.. --.|++.||.+|=. .+-.. -.+||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe~---Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHDS---LHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTTT---SCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH-HHHhh---ccCCcCC
Confidence 46999999885433 23799999999932 22111 3689988
Done!