BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013470
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 157/372 (42%), Gaps = 56/372 (15%)
Query: 73 ACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHIS 132
+ G +H +AL S G V SWGRG GQLGHG+ D P ++ DGH+ I ++
Sbjct: 22 SAGASHSVALLS-----GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ--IVSVT 74
Query: 133 AGWNHSGFVSDSGC-LFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSL 191
G +H+ S SG +++ G G FG+LGHG+ +P+ + + + QIACG H L
Sbjct: 75 CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 134
Query: 192 VLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALS 251
+ + +V +G + GQLG+ V PQ I I ++A + +AA++
Sbjct: 135 AV---TMEGEVQSWGRNQNGQLGLGDTEDSLV--PQKIQAFEGIRIKMVAAGAEHTAAVT 189
Query: 252 AEGHLYTWG------RGFNSTSD--VNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLML 303
+G LY WG G +D V GW H + ++ G +
Sbjct: 190 EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTY 249
Query: 304 GGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFII 363
G S +G L + P K+ L + QI+ G H+ +T
Sbjct: 250 GWSKYGQLGHGDLEDHLIP-----HKLEALSNSFISQISGGWRHTMALT----------- 293
Query: 364 SYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEV 423
+ + WGW + GQ+G+GN DQ P V F + ++V
Sbjct: 294 ---------------SDGKLYGWGWNKFGQVGVGNNLDQCSPVQV----RFPDDQKVVQV 334
Query: 424 FCGSGFTYAISR 435
CG T A++
Sbjct: 335 SCGWRHTLAVTE 346
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 147/380 (38%), Gaps = 46/380 (12%)
Query: 36 VWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVFS 95
V SWG G DGQLG G D CG H +A + G +V+S
Sbjct: 37 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQS----GMEVYS 92
Query: 96 WGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTF 155
WG G G+LGHG D P P+ G R I I+ G +H V+ G + + G
Sbjct: 93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIR--IKQIACGDSHCLAVTMEGEVQSWGRNQN 150
Query: 156 GQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGV 215
GQLG GD P K+ +F + +A G H+ + +D +YG+G G+ G LG+
Sbjct: 151 GQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTED---GDLYGWGWGRYGNLGL 207
Query: 216 SKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGR----GFNSTSD--V 269
R V + G + +V S + S + Y W + G D +
Sbjct: 208 GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 267
Query: 270 NCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEK 329
GW H + LT DG++ G + G + + P+ V
Sbjct: 268 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP- 326
Query: 330 VSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWG 389
D KV+Q++ G H+ VT E + WG G
Sbjct: 327 ----DDQKVVQVSCGWRHTLAVT--------------------------ERNNVFAWGRG 356
Query: 390 EHGQLGLGNTCDQIHPKVVN 409
+GQLG+G + D+ PK++
Sbjct: 357 TNGQLGIGESVDRNFPKIIE 376
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
+V SWG +GQLG G D A G H A+T G ++
Sbjct: 141 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTED-----GDLY 195
Query: 95 SWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGT 154
WG G G LG G+ D L P+ VT G + ++ ++ GW H+ VS SG L+T G
Sbjct: 196 GWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSM--VACGWRHTISVSYSGALYTYGWSK 253
Query: 155 FGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLG 214
+GQLGHGD H P K+ + N + QI+ G RH++ L D ++YG+G K GQ+G
Sbjct: 254 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSD---GKLYGWGWNKFGQVG 310
Query: 215 VSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFN 264
V + + S QV D ++V +S + A++ +++ WGRG N
Sbjct: 311 VGNN-LDQCSPVQVRF-PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 358
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 134/316 (42%), Gaps = 20/316 (6%)
Query: 31 QQVVKVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIG 90
Q ++V+SWG G G+LG G D ACG +H LA+T +
Sbjct: 85 QSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVT-----ME 139
Query: 91 GKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTC 150
G+V SWGR +GQLG G+ D+L P+ + F+G R I ++AG H+ V++ G L+
Sbjct: 140 GEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR--IKMVAAGAEHTAAVTEDGDLYGW 197
Query: 151 GDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKR 210
G G +G LG GD P +V+S + + +ACG RH++ + +Y +G K
Sbjct: 198 GWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV---SYSGALYTYGWSKY 254
Query: 211 GQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGR--------G 262
GQLG + +P L + I IS + AL+++G LY WG G
Sbjct: 255 GQLG--HGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVG 312
Query: 263 FNSTSDVNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRP 322
N GW H L +T V G +G L E V P
Sbjct: 313 NNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 372
Query: 323 LSVALEKVSNLDGVKV 338
+ V G +
Sbjct: 373 KIIEALSVDGASGQHI 388
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 157/372 (42%), Gaps = 56/372 (15%)
Query: 73 ACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHIS 132
+ G +H +AL S G V SWGRG GQLGHG+ D P ++ DGH+ I ++
Sbjct: 10 SAGASHSVALLS-----GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ--IVSVT 62
Query: 133 AGWNHSGFVSDSGC-LFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSL 191
G +H+ S SG +++ G G FG+LGHG+ +P+ + + + QIACG H L
Sbjct: 63 CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 122
Query: 192 VLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALS 251
+ + +V +G + GQLG+ V PQ I I ++A + +AA++
Sbjct: 123 AVTME---GEVQSWGRNQNGQLGLGDTEDSLV--PQKIQAFEGIRIKMVAAGAEHTAAVT 177
Query: 252 AEGHLYTWG------RGFNSTSD--VNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLML 303
+G LY WG G +D V GW H + ++ G +
Sbjct: 178 EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTY 237
Query: 304 GGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFII 363
G S +G L + P K+ L + QI+ G H+ +T
Sbjct: 238 GWSKYGQLGHGDLEDHLIP-----HKLEALSNSFISQISGGWRHTMALT----------- 281
Query: 364 SYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEV 423
+ + WGW + GQ+G+GN DQ P V F + ++V
Sbjct: 282 ---------------SDGKLYGWGWNKFGQVGVGNNLDQCSPVQV----RFPDDQKVVQV 322
Query: 424 FCGSGFTYAISR 435
CG T A++
Sbjct: 323 SCGWRHTLAVTE 334
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 147/380 (38%), Gaps = 46/380 (12%)
Query: 36 VWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVFS 95
V SWG G DGQLG G D CG H +A + G +V+S
Sbjct: 25 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQS----GMEVYS 80
Query: 96 WGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTF 155
WG G G+LGHG D P P+ G R I I+ G +H V+ G + + G
Sbjct: 81 WGWGDFGRLGHGNSSDLFTPLPIKALHGIR--IKQIACGDSHCLAVTMEGEVQSWGRNQN 138
Query: 156 GQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGV 215
GQLG GD P K+ +F + +A G H+ + +D +YG+G G+ G LG+
Sbjct: 139 GQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTED---GDLYGWGWGRYGNLGL 195
Query: 216 SKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGR----GFNSTSD--V 269
R V + G + +V S + S + Y W + G D +
Sbjct: 196 GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 255
Query: 270 NCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEK 329
GW H + LT DG++ G + G + + P+ V
Sbjct: 256 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP- 314
Query: 330 VSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWG 389
D KV+Q++ G H+ VT E + WG G
Sbjct: 315 ----DDQKVVQVSCGWRHTLAVT--------------------------ERNNVFAWGRG 344
Query: 390 EHGQLGLGNTCDQIHPKVVN 409
+GQLG+G + D+ PK++
Sbjct: 345 TNGQLGIGESVDRNFPKIIE 364
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
+V SWG +GQLG G D A G H A+T G ++
Sbjct: 129 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTED-----GDLY 183
Query: 95 SWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGT 154
WG G G LG G+ D L P+ VT G + ++ ++ GW H+ VS SG L+T G
Sbjct: 184 GWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSM--VACGWRHTISVSYSGALYTYGWSK 241
Query: 155 FGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLG 214
+GQLGHGD H P K+ + N + QI+ G RH++ L D ++YG+G K GQ+G
Sbjct: 242 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSD---GKLYGWGWNKFGQVG 298
Query: 215 VSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFN 264
V + + S QV D ++V +S + A++ +++ WGRG N
Sbjct: 299 VGNN-LDQCSPVQVRF-PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 346
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 133/313 (42%), Gaps = 20/313 (6%)
Query: 31 QQVVKVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIG 90
Q ++V+SWG G G+LG G D ACG +H LA+T +
Sbjct: 73 QSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVT-----ME 127
Query: 91 GKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTC 150
G+V SWGR +GQLG G+ D+L P+ + F+G R I ++AG H+ V++ G L+
Sbjct: 128 GEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR--IKMVAAGAEHTAAVTEDGDLYGW 185
Query: 151 GDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKR 210
G G +G LG GD P +V+S + + +ACG RH++ + +Y +G K
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV---SYSGALYTYGWSKY 242
Query: 211 GQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGR--------G 262
GQLG + +P L + I IS + AL+++G LY WG G
Sbjct: 243 GQLG--HGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVG 300
Query: 263 FNSTSDVNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRP 322
N GW H L +T V G +G L E V P
Sbjct: 301 NNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 360
Query: 323 LSVALEKVSNLDG 335
+ V G
Sbjct: 361 KIIEALSVDGASG 373
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/372 (27%), Positives = 162/372 (43%), Gaps = 52/372 (13%)
Query: 73 ACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHIS 132
+ G +H +AL S G V SWGRG GQLGHG+ D P ++ DGH+ I ++
Sbjct: 12 SAGASHSVALLS-----GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ--IVSVT 64
Query: 133 AGWNHSGFVSDSGC-LFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSL 191
G +H+ S SG +++ G G FG+LGHG+ +P+ + + + QIACG H L
Sbjct: 65 CGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 124
Query: 192 VLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALS 251
+ + +V +G + GQLG+ V PQ I I ++A + +AA++
Sbjct: 125 AVTXE---GEVQSWGRNQNGQLGLGDTEDSLV--PQKIQAFEGIRIKXVAAGAEHTAAVT 179
Query: 252 AEGHLYTWG------RGFNSTSD--VNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLML 303
+G LY WG G +D V GW H + ++ G +
Sbjct: 180 EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTY 239
Query: 304 GGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVT--GKFH---WV 358
G S +G L + P K+ L + QI+ GA H+ +T GK + W
Sbjct: 240 GWSKYGQLGHGDLEDHLIP-----HKLEALSNSFISQISGGARHTXALTSDGKLYGWGWN 294
Query: 359 RLFIISY-------TPFFPPFFIN--------------VIAENRAIMTWGWGEHGQLGLG 397
+ + +P F + + E + WG G +GQLG+G
Sbjct: 295 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG 354
Query: 398 NTCDQIHPKVVN 409
+ D+ PK++
Sbjct: 355 ESVDRNFPKIIE 366
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 112/230 (48%), Gaps = 12/230 (5%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
+V SWG +GQLG G D A G H A+T G ++
Sbjct: 131 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTED-----GDLY 185
Query: 95 SWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGT 154
WG G G LG G+ D L P+ VT G + + ++ GW H+ VS SG L+T G
Sbjct: 186 GWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSX--VACGWRHTISVSYSGALYTYGWSK 243
Query: 155 FGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLG 214
+GQLGHGD H P K+ + N + QI+ G RH+ L D ++YG+G K GQ+G
Sbjct: 244 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSD---GKLYGWGWNKFGQVG 300
Query: 215 VSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFN 264
V + + S QV D ++V +S + A++ +++ WGRG N
Sbjct: 301 VGNN-LDQCSPVQVRF-PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 348
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 133/339 (39%), Gaps = 47/339 (13%)
Query: 131 ISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHS 190
ISAG +HS + + + G G GQLGHGD SP ++S+ + + CG H+
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 70
Query: 191 LVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAAL 250
+ + G +VY +G G G+LG LP LH I I I+ A+
Sbjct: 71 VAYSQS--GXEVYSWGWGDFGRLGHGNSSDLFTPLP--IKALHGIRIKQIACGDSHCLAV 126
Query: 251 SAEGHLYTWGR------GFNSTSD--VNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLM 302
+ EG + +WGR G T D V G H +T DG++
Sbjct: 127 TXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYG 186
Query: 303 LGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGK-----FHW 357
G +G L +R P E+V++ G K +A G H+ V+ + W
Sbjct: 187 WGWGRYGNLGLGDRTDRLVP-----ERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGW 241
Query: 358 VRL-----------FIISYTPFFPPFFINVIA----------ENRAIMTWGWGEHGQLGL 396
+ I FI+ I+ + + WGW + GQ+G+
Sbjct: 242 SKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGV 301
Query: 397 GNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISR 435
GN DQ P V F + ++V CG T A++
Sbjct: 302 GNNLDQCSPVQV----RFPDDQKVVQVSCGWRHTLAVTE 336
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
K++ WG GQ+G G D+ +CG H LA+T ++V F
Sbjct: 287 KLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNV-----F 341
Query: 95 SWGRGSSGQLGHGEMVDALYPKPV 118
+WGRG++GQLG GE VD +PK +
Sbjct: 342 AWGRGTNGQLGIGESVDRNFPKII 365
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
+V SWG +GQLG G D A G H A+T G ++
Sbjct: 129 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTED-----GDLY 183
Query: 95 SWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGT 154
WG G G LG G+ D L P+ VT G + ++ ++ GW H+ VS SG L+T G
Sbjct: 184 GWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSM--VACGWRHTISVSYSGALYTYGWSK 241
Query: 155 FGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLG 214
+GQLGHGD H P K+ + N + QI+ G RH++ L D ++YG+G K GQ+G
Sbjct: 242 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSD---GKLYGWGWNKFGQVG 298
Query: 215 VSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFN 264
V + + S QV D ++V +S + A++ +++ WGRG N
Sbjct: 299 VGNN-LDQCSPVQVRF-PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 346
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/372 (26%), Positives = 159/372 (42%), Gaps = 52/372 (13%)
Query: 73 ACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHIS 132
+ G +H +AL S G V SWGRG GQLGHG+ D P ++ DGH+ I ++
Sbjct: 10 SAGASHSVALLS-----GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ--IVSVT 62
Query: 133 AGWNHSGFVSDSGC-LFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSL 191
G +H+ S SG +++ G G FG+LGHG+ +P+ + + + QIACG H L
Sbjct: 63 CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 122
Query: 192 VLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALS 251
+ + +V +G + GQLG+ V PQ I I ++A + +AA++
Sbjct: 123 AVTME---GEVQSWGRNQNGQLGLGDTEDSLV--PQKIQAFEGIRIKMVAAGAEHTAAVT 177
Query: 252 AEGHLYTWG------RGFNSTSD--VNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLML 303
+G LY WG G +D V GW H + ++ G +
Sbjct: 178 EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTY 237
Query: 304 GGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVT--GKFH---WV 358
G S +G L + P K+ L + QI+ G H+ +T GK + W
Sbjct: 238 GWSKYGQLGHGDLEDHLIP-----HKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWN 292
Query: 359 RLFIISY-------TPFFPPFFIN--------------VIAENRAIMTWGWGEHGQLGLG 397
+ + +P F + + E + WG G +GQLG+G
Sbjct: 293 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG 352
Query: 398 NTCDQIHPKVVN 409
+ D+ PK++
Sbjct: 353 ESVDRNFPKIIE 364
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 133/339 (39%), Gaps = 47/339 (13%)
Query: 131 ISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHS 190
ISAG +HS + + + G G GQLGHGD SP ++S+ + + CG H+
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 191 LVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAAL 250
+ + G +VY +G G G+LG LP LH I I I+ A+
Sbjct: 69 VAYSQS--GMEVYSWGWGDFGRLGHGNSSDLFTPLP--IKALHGIRIKQIACGDSHCLAV 124
Query: 251 SAEGHLYTWGR------GFNSTSD--VNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLM 302
+ EG + +WGR G T D V G H +T DG++
Sbjct: 125 TMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYG 184
Query: 303 LGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGK-----FHW 357
G +G L +R P E+V++ G K+ +A G H+ V+ + W
Sbjct: 185 WGWGRYGNLGLGDRTDRLVP-----ERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGW 239
Query: 358 VRL-----------FIISYTPFFPPFFINVIA----------ENRAIMTWGWGEHGQLGL 396
+ I FI+ I+ + + WGW + GQ+G+
Sbjct: 240 SKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGV 299
Query: 397 GNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISR 435
GN DQ P V F + ++V CG T A++
Sbjct: 300 GNNLDQCSPVQV----RFPDDQKVVQVSCGWRHTLAVTE 334
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
K++ WG GQ+G G D+ +CG H LA+T ++V F
Sbjct: 285 KLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNV-----F 339
Query: 95 SWGRGSSGQLGHGEMVDALYPKPV 118
+WGRG++GQLG GE VD +PK +
Sbjct: 340 AWGRGTNGQLGIGESVDRNFPKII 363
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 123/284 (43%), Gaps = 27/284 (9%)
Query: 75 GGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAG 134
GG H LAL+S G+V+SWG G+LGHG P+ + G + ++AG
Sbjct: 115 GGKHCLALSSE-----GEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRG--IEVVDVAAG 167
Query: 135 WNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGM--RHSLV 192
HS V+ +G L+T G G +G+LGH D P V + V IACG +L
Sbjct: 168 GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLC 227
Query: 193 LLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSA 252
L D + V+ +G G G+LG + +P L + +V + S AL+
Sbjct: 228 LTDD---DTVWSWGDGDYGKLG--RGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTK 282
Query: 253 EGHLYTWGRG----FNSTSDVNCXXXXXXXXXXXXXXL----GWNHVLVLTGDGEVLMLG 304
G +YTWG+G SD + + G H + T DGEV G
Sbjct: 283 SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWG 342
Query: 305 GSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHS 348
+ G L D + RP VA L G KV ++A G+ H+
Sbjct: 343 DNDEGQLGDGTTNAIQRPRLVAA-----LQGKKVNRVACGSAHT 381
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 12/227 (5%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
+V+SWG DG+LG G A GGAH +T+ G ++
Sbjct: 127 EVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAA-----GDLY 181
Query: 95 SWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGT 154
+WG+G G+LGH + D L PK V GHR +G + ++D +++ GDG
Sbjct: 182 TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241
Query: 155 FGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLG 214
+G+LG G P+K+ S V ++ CG + S+ L K VY +G G +LG
Sbjct: 242 YGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKS---GAVYTWGKGDYHRLG 298
Query: 215 -VSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWG 260
S D +R P+ GL +++ I+ + +G +YTWG
Sbjct: 299 HGSDDHVRR---PRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWG 342
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 69/157 (43%), Gaps = 7/157 (4%)
Query: 36 VWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVFS 95
VWSWG G G+LG G CG +ALT G V++
Sbjct: 234 VWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKS-----GAVYT 288
Query: 96 WGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTF 155
WG+G +LGHG P+ V G + + I+ G H ++ G ++T GD
Sbjct: 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKK--VIAIATGSLHCVCCTEDGEVYTWGDNDE 346
Query: 156 GQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLV 192
GQLG G + P V++ K V+++ACG H+L
Sbjct: 347 GQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/382 (26%), Positives = 148/382 (38%), Gaps = 54/382 (14%)
Query: 91 GKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTC 150
G ++ WG GQLG E P P R + G V+ G L+
Sbjct: 20 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLR--PVQLIGGEQTLFAVTADGKLYAT 77
Query: 151 GDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIAC--GMRHSLVLLKDCLGNQVYGFGSG 208
G G G+LG G S S+P + S + + ++A G +H L L + +VY +G
Sbjct: 78 GYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE---GEVYSWGEA 134
Query: 209 KRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGF----- 263
+ G+LG P+V L IE+V ++A G SA ++A G LYTWG+G
Sbjct: 135 EDGKLG--HGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 192
Query: 264 NSTSDVNCXXXXXXXXX-----XXXXXLGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVS 318
+S S+ G L LT D V G +G L
Sbjct: 193 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 252
Query: 319 STRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVT--------GKFHWVRLFIISYTPFFP 370
P+ K+ +L G+ V+++ G++ S +T GK + RL S
Sbjct: 253 CKVPM-----KIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR 307
Query: 371 PFFI------NVIA------------ENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGD 412
P + VIA E+ + TWG + GQLG G T P++V
Sbjct: 308 PRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVA--- 364
Query: 413 EFQNRDTQLEVFCGSGFTYAIS 434
Q + V CGS T A S
Sbjct: 365 ALQGKKVN-RVACGSAHTLAWS 385
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 8/176 (4%)
Query: 91 GKVFSWG--RGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLF 148
G+V++WG R + G LG + + P +Y I ++ G +H F+ + G +F
Sbjct: 167 GEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVF 226
Query: 149 TCGDGTFGQLGHGDY-RSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGS 207
G+G QLG R + F ++V IA G H L KD N++ +G
Sbjct: 227 AWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKD---NKLVSWGL 283
Query: 208 GKRGQLGVSKDRIRS--VSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGR 261
+ GQ GVS+D V+ P+ ++ I I+A S LS +G LY+ GR
Sbjct: 284 NQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGR 339
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 106/284 (37%), Gaps = 53/284 (18%)
Query: 17 INNAKPKIXXXXXXQQVVKVWSWGAGTDGQLGTGRLHDEXXXXXXXXX-----XXXXXXX 71
I NA+ Q + ++ WG G+ +LG G L
Sbjct: 12 IINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIIS 71
Query: 72 XACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHG------------------------ 107
A GG H LAL S+ V+SWG G LG
Sbjct: 72 FAVGGMHTLALDEESN-----VWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDL 126
Query: 108 ---EMVDALYPKP--VTFFDGHRYTITHISAGWNHSGFVSDSGCL-----FTCGDGTFGQ 157
E A P+ +GH+ + ++A N S + +G + F C +G G
Sbjct: 127 NELESTPAKIPRESFPPLAEGHK--VVQLAATDNMSCALFSNGEVYAWGTFRCNEGILG- 183
Query: 158 LGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVS- 216
+ +P KV +F N+ Q+A G H L L ++ + V+ +G+G++ QLG
Sbjct: 184 FYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGM---VFAWGNGQQNQLGRKV 240
Query: 217 KDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWG 260
+R R +L GL ++ + N AL+ + L +WG
Sbjct: 241 MERFRLKTLDPRPFGLRHVKYIASGEN--HCFALTKDNKLVSWG 282
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 85/222 (38%), Gaps = 26/222 (11%)
Query: 36 VWSWGAGTDGQLGTGRLHD-EXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
V++WG G QLG + A G H ALT + K+
Sbjct: 225 VFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDN-----KLV 279
Query: 95 SWGRGSSGQLGHGEMVD--ALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGD 152
SWG GQ G E V+ AL KP I I+AG +HS +S G L++CG
Sbjct: 280 SWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGR 339
Query: 153 GTFGQLG--------------HGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCL 198
++G HG R+ P K+++ +A G HS+ + ++ +
Sbjct: 340 LDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV--PKFKSVAAGSHHSVAVAQNGI 397
Query: 199 GNQVYGFGSGKRGQLGVSKDRIR-SVSLPQVTIGLHDIEIVG 239
+GFG LG +D + H+I +VG
Sbjct: 398 AYS-WGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVG 438
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 106/307 (34%), Gaps = 55/307 (17%)
Query: 93 VFSWGRGSSGQLGHGEMV---DALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFT 149
+F WG GS +LG G + + P+ F I + G H+ + + +++
Sbjct: 31 IFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90
Query: 150 CGDGTFGQLGHGDYRS-----------------------HSSPVKV--SSFV----NKNV 180
G G LG + S+P K+ SF V
Sbjct: 91 WGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKV 150
Query: 181 HQIACGMRHSLVLLKDCLGNQVYGFGSGK--RGQLGVSKDRIRSVSLPQVTIGLHDIEIV 238
Q+A S L + +VY +G+ + G LG +D+I+ P IV
Sbjct: 151 VQLAATDNMSCALFSN---GEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIV 207
Query: 239 GISANGDRSAALSAEGHLYTWGRGFNSTSDVNCXXXXXXXXXX---------XXXXLGWN 289
++ D L EG ++ WG G + G N
Sbjct: 208 QLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGEN 267
Query: 290 HVLVLTGDGEVLMLGGSHHGMLSDPERVSS----TRPLSVALEKVSNLDGVKVIQIAAGA 345
H LT D +++ G + G E V T+P +AL D V + IAAG
Sbjct: 268 HCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP-----DNVVIRSIAAGE 322
Query: 346 EHSAVVT 352
HS +++
Sbjct: 323 HHSLILS 329
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 21/207 (10%)
Query: 136 NHSGFVSDSGCLFTCGDGTFGQLGHGD-YRSHSSPVKVSSFVNKNVHQIACGMRHSLVLL 194
+H ++ G + T G G GQLG G+ P VS + ++V Q G H++ L
Sbjct: 18 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVS--IPEDVVQAEAGGMHTVCLS 75
Query: 195 KDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIE--IVGISANGDRSAALSA 252
K QVY FG G LG R SV ++ G +++ +V +SA +AAL+
Sbjct: 76 KS---GQVYSFGCNDEGALG----RDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTD 128
Query: 253 EGHLYTWGRGFNSTSDVNCXXXXXXXXXXXXXXL---------GWNHVLVLTGDGEVLML 303
+G ++ WG ++ + L G +H+++LT DG++ L
Sbjct: 129 DGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTL 188
Query: 304 GGSHHGMLSDPERVSSTRPLSVALEKV 330
G G L + + R LE++
Sbjct: 189 GCGEQGQLGRVPELFANRGGRQGLERL 215
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 13/175 (7%)
Query: 91 GKVFSWGRGSSGQLGHGEMV-DALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFT 149
G V + G+G GQLG GE V + P V+ + + AG H+ +S SG +++
Sbjct: 27 GLVLTLGQGDVGQLGLGENVMERKKPALVSIPE----DVVQAEAGGMHTVCLSKSGQVYS 82
Query: 150 CGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGK 209
G G LG S V + + V Q++ G H+ L D +V+ +GS +
Sbjct: 83 FGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDD---GRVFLWGSFR 139
Query: 210 --RGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRG 262
G +G+ + +S+ QV + D+ +V +++ D L+A+G LYT G G
Sbjct: 140 DNNGVIGLLEPMKKSMVPVQVQL---DVPVVKVASGNDHLVMLTADGDLYTLGCG 191
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 91 GKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTC 150
GK +S GR G+LG GE + K + ++ ++ G + V+ G +F
Sbjct: 305 GKAYSLGRAEYGRLGLGEGAEE---KSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAW 361
Query: 151 GDGTFGQLGHGDYRSHSSPVKV--SSFVNKNVHQIACGMRHSLVLLKD 196
G GT QLG G SPV++ N+ V ++ G +H+++L+KD
Sbjct: 362 GMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKD 409
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
K +S G G+LG G +E ACG + A+T G+VF
Sbjct: 306 KAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSV-ACGASVGYAVTKD-----GRVF 359
Query: 95 SWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHS 138
+WG G++ QLG G+ DA P + + +S+G H+
Sbjct: 360 AWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHT 403
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
+V+S+G +G LG + + G +H ALT G+VF
Sbjct: 79 QVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDD-----GRVF 133
Query: 95 SWG--RGSSGQLGHGE-MVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCG 151
WG R ++G +G E M ++ P V + +++G +H ++ G L+T G
Sbjct: 134 LWGSFRDNNGVIGLLEPMKKSMVPVQVQL----DVPVVKVASGNDHLVMLTADGDLYTLG 189
Query: 152 DGTFGQLGH 160
G GQLG
Sbjct: 190 CGEQGQLGR 198
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 31/210 (14%)
Query: 73 ACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDA-----------LYPKPVTFF 121
A G H++ LT+ G +++ G G GQLG + A L PK V
Sbjct: 170 ASGNDHLVMLTAD-----GDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLK 224
Query: 122 D----GH-RYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFV 176
GH R+ A + + +S G ++ G + QLG S P ++SF
Sbjct: 225 SRGSRGHVRFQDAFCGAYFTFA--ISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFK 282
Query: 177 NKNVHQI--ACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHD 234
N + + G H++ + + + Y G + G+LG+ + S+P + L
Sbjct: 283 NSTKSWVGFSGGQHHTVCMDSE---GKAYSLGRAEYGRLGLGEG-AEEKSIPTLISRLPA 338
Query: 235 IEIVGISANGDRSAALSAEGHLYTWGRGFN 264
+ V A+ A++ +G ++ WG G N
Sbjct: 339 VSSVACGAS--VGYAVTKDGRVFAWGMGTN 366
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 69/189 (36%), Gaps = 48/189 (25%)
Query: 287 GWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTR--PLSVALEKVSNLDGVKVIQIAAG 344
G H + L+ G+V G + G L V + P V L++ KV+Q++AG
Sbjct: 67 GGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE-------KVVQVSAG 119
Query: 345 AEHSAVVTGK---FHW------------VRLFIISYTPFFPPFFINVI------------ 377
H+A +T F W + S P + V+
Sbjct: 120 DSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVML 179
Query: 378 AENRAIMTWGWGEHGQLG-----LGNTCDQ------IHPKVVNLGDEFQNRDTQLE-VFC 425
+ + T G GE GQLG N + + PK V L + + FC
Sbjct: 180 TADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFC 239
Query: 426 GSGFTYAIS 434
G+ FT+AIS
Sbjct: 240 GAYFTFAIS 248
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 21/207 (10%)
Query: 136 NHSGFVSDSGCLFTCGDGTFGQLGHGD-YRSHSSPVKVSSFVNKNVHQIACGMRHSLVLL 194
+H ++ G + T G G GQLG G+ P VS + ++V Q G H++ L
Sbjct: 7 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVS--IPEDVVQAEAGGMHTVCLS 64
Query: 195 KDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIE--IVGISANGDRSAALSA 252
K QVY FG G LG R SV ++ G +++ +V +SA +AAL+
Sbjct: 65 KS---GQVYSFGCNDEGALG----RDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTD 117
Query: 253 EGHLYTWGRGFNSTSDVNCXXXXXXXXXXXXXXL---------GWNHVLVLTGDGEVLML 303
+G ++ WG ++ + L G +H+++LT DG++ L
Sbjct: 118 DGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTL 177
Query: 304 GGSHHGMLSDPERVSSTRPLSVALEKV 330
G G L + + R LE++
Sbjct: 178 GCGEQGQLGRVPELFANRGGRQGLERL 204
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 13/175 (7%)
Query: 91 GKVFSWGRGSSGQLGHGEMV-DALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFT 149
G V + G+G GQLG GE V + P V+ + + AG H+ +S SG +++
Sbjct: 16 GLVLTLGQGDVGQLGLGENVMERKKPALVSIPE----DVVQAEAGGMHTVCLSKSGQVYS 71
Query: 150 CGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGK 209
G G LG S V + + V Q++ G H+ L D +V+ +GS +
Sbjct: 72 FGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDD---GRVFLWGSFR 128
Query: 210 --RGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRG 262
G +G+ + +S+ QV + D+ +V +++ D L+A+G LYT G G
Sbjct: 129 DNNGVIGLLEPMKKSMVPVQVQL---DVPVVKVASGNDHLVMLTADGDLYTLGCG 180
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 91 GKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTC 150
GK +S GR G+LG GE + K + ++ ++ G + V+ G +F
Sbjct: 294 GKAYSLGRAEYGRLGLGEGAEE---KSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAW 350
Query: 151 GDGTFGQLGHGDYRSHSSPVKV--SSFVNKNVHQIACGMRHSLVLLKD 196
G GT QLG G SPV++ N+ V ++ G +H+++L+KD
Sbjct: 351 GMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKD 398
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
K +S G G+LG G +E ACG + A+T G+VF
Sbjct: 295 KAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSV-ACGASVGYAVTKD-----GRVF 348
Query: 95 SWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHS 138
+WG G++ QLG G+ DA P + + +S+G H+
Sbjct: 349 AWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHT 392
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
+V+S+G +G LG + + G +H ALT G+VF
Sbjct: 68 QVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDD-----GRVF 122
Query: 95 SWG--RGSSGQLGHGE-MVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCG 151
WG R ++G +G E M ++ P V + +++G +H ++ G L+T G
Sbjct: 123 LWGSFRDNNGVIGLLEPMKKSMVPVQVQL----DVPVVKVASGNDHLVMLTADGDLYTLG 178
Query: 152 DGTFGQLGH 160
G GQLG
Sbjct: 179 CGEQGQLGR 187
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 31/210 (14%)
Query: 73 ACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDA-----------LYPKPVTFF 121
A G H++ LT+ G +++ G G GQLG + A L PK V
Sbjct: 159 ASGNDHLVMLTAD-----GDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLK 213
Query: 122 D----GH-RYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFV 176
GH R+ A + + +S G ++ G + QLG S P ++SF
Sbjct: 214 SRGSRGHVRFQDAFCGAYFTFA--ISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFK 271
Query: 177 NKNVHQI--ACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHD 234
N + + G H++ + + + Y G + G+LG+ + S+P + L
Sbjct: 272 NSTKSWVGFSGGQHHTVCMDSE---GKAYSLGRAEYGRLGLGEG-AEEKSIPTLISRLPA 327
Query: 235 IEIVGISANGDRSAALSAEGHLYTWGRGFN 264
+ V A+ A++ +G ++ WG G N
Sbjct: 328 VSSVACGAS--VGYAVTKDGRVFAWGMGTN 355
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 69/189 (36%), Gaps = 48/189 (25%)
Query: 287 GWNHVLVLTGDGEVLMLGGSHHGMLSDPERV--SSTRPLSVALEKVSNLDGVKVIQIAAG 344
G H + L+ G+V G + G L V S P V L++ KV+Q++AG
Sbjct: 56 GGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE-------KVVQVSAG 108
Query: 345 AEHSAVVTGK---FHW------------VRLFIISYTPFFPPFFINVI------------ 377
H+A +T F W + S P + V+
Sbjct: 109 DSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVML 168
Query: 378 AENRAIMTWGWGEHGQLG-----LGNTCDQ------IHPKVVNLGDEFQNRDTQLE-VFC 425
+ + T G GE GQLG N + + PK V L + + FC
Sbjct: 169 TADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFC 228
Query: 426 GSGFTYAIS 434
G+ FT+AIS
Sbjct: 229 GAYFTFAIS 237
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 77/183 (42%), Gaps = 30/183 (16%)
Query: 145 GCLFTCGDGTFGQLGHGD---YRSHSSPVK-VSSFVNKNVHQIACGMRHSLVLLKDCLGN 200
G + CG+G GQLG G+ R SPV + V+ I+ G H+LVL K
Sbjct: 43 GNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVD-----ISAGGMHNLVLTKS---G 94
Query: 201 QVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVG----ISANGDRSAALSAEGHL 256
+Y FG G LG S S P + I++ G ISA SA L +G +
Sbjct: 95 DIYSFGCNDEGALGRDTSEDGSESKPDL------IDLPGKALCISAGDSHSACLLEDGRV 148
Query: 257 YTWGRGFNS------TSDVNCXXXXXXXXXXXXXXL--GWNHVLVLTGDGEVLMLGGSHH 308
+ WG +S T D N + G +H+++LT G+V +G +
Sbjct: 149 FAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQ 208
Query: 309 GML 311
G L
Sbjct: 209 GQL 211
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 97/246 (39%), Gaps = 31/246 (12%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
+V++WG+ D G D A G H++ LT+ GKVF
Sbjct: 147 RVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTT-----AGKVF 201
Query: 95 SWGRGSSGQLGH-------GE----MVDALYPKPVTFFDGHRYTITHISAGW--NHSGFV 141
+ G GQLG GE D L P + + A W N+ F+
Sbjct: 202 TVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPF-----EAIWATNYCTFM 256
Query: 142 SDSG--CLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLG 199
+S ++ G F QL H + + + + K++ IA G H+++L D L
Sbjct: 257 RESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTEL-KDIRHIAGGQHHTVILTTD-LK 314
Query: 200 NQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTW 259
V G R LG KD V P + L + +IV + S A++ +G LY+W
Sbjct: 315 CSVVGRPEYGRLGLGDVKD---VVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSW 370
Query: 260 GRGFNS 265
G G N+
Sbjct: 371 GSGVNN 376
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 21/187 (11%)
Query: 80 LALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSG 139
L L +V+G V G G GQLG GE D L K ++ G + ISAG H+
Sbjct: 33 LELPKRRTVLG-NVLVCGNGDVGQLGLGE--DILERKRLSPVAGIPDAV-DISAGGMHNL 88
Query: 140 FVSDSGCLFTCGDGTFGQLGHGDYR--SHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDC 197
++ SG +++ G G LG S S P + + I+ G HS LL+D
Sbjct: 89 VLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID--LPGKALCISAGDSHSACLLED- 145
Query: 198 LGNQVYGFGSGK--RGQLGVSKD--RIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAE 253
+V+ +GS + G +G++ D + + L + T+ I++ D L+
Sbjct: 146 --GRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTV------CCSIASGADHLVILTTA 197
Query: 254 GHLYTWG 260
G ++T G
Sbjct: 198 GKVFTVG 204
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 45 GQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVFSWGRGSSGQL 104
G+LG G + D CG A+T I GK++SWG G + QL
Sbjct: 324 GRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVT-----IDGKLYSWGSGVNNQL 378
Query: 105 GHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFV 141
G G+ D L P V + + S G H+ F+
Sbjct: 379 GVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFL 415
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 50/134 (37%), Gaps = 31/134 (23%)
Query: 91 GKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTC 150
GKV +WG S GQ V A VT DG YT + +G +
Sbjct: 122 GKVIAWGDDSDGQT----TVPAEAQSGVTALDGGVYTALAVK-----------NGGVIAW 166
Query: 151 GDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKR 210
GD FGQ V + V +A G+ HSL LKD +V +G +
Sbjct: 167 GDNYFGQ------------TTVPAEAQSGVDDVAGGIFHSLA-LKD---GKVIAWGDNRY 210
Query: 211 GQLGVSKDRIRSVS 224
Q V + + VS
Sbjct: 211 KQTTVPTEALSGVS 224
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 50/134 (37%), Gaps = 31/134 (23%)
Query: 91 GKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTC 150
GKV +WG S GQ V A VT DG YT + +G +
Sbjct: 120 GKVIAWGDDSDGQT----TVPAEAQSGVTALDGGVYTALAVK-----------NGGVIAW 164
Query: 151 GDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKR 210
GD FGQ V + V +A G+ HSL LKD +V +G +
Sbjct: 165 GDNYFGQ------------TTVPAEAQSGVDDVAGGIFHSLA-LKD---GKVIAWGDNRY 208
Query: 211 GQLGVSKDRIRSVS 224
Q V + + VS
Sbjct: 209 KQTTVPTEALSGVS 222
>pdb|3LSQ|A Chain A, Trypanosoma Brucei Seryl-Trna Synthetase
pdb|3LSQ|B Chain B, Trypanosoma Brucei Seryl-Trna Synthetase
pdb|3LSS|A Chain A, Trypanosoma Brucei Seryl-Trna Synthetase In Complex With
Atp
pdb|3LSS|B Chain B, Trypanosoma Brucei Seryl-Trna Synthetase In Complex With
Atp
Length = 484
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 20/78 (25%)
Query: 327 LEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISY----------TPFFPPFFINV 376
+E++ +D K + AG S V+ G +++ ++SY TPF+PPFF+
Sbjct: 180 MERLGMMDTSKAVTSMAGG-RSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFL-- 236
Query: 377 IAENRAIMTWGWGEHGQL 394
NR +M GE QL
Sbjct: 237 ---NRDVM----GEVAQL 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,310,298
Number of Sequences: 62578
Number of extensions: 544379
Number of successful extensions: 1294
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1037
Number of HSP's gapped (non-prelim): 93
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)